BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047388
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V5W|A Chain A, Crystal Structure Of The Human Dmc1 Protein
pdb|1V5W|B Chain B, Crystal Structure Of The Human Dmc1 Protein
Length = 343
Score = 390 bits (1001), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/334 (59%), Positives = 246/334 (73%), Gaps = 11/334 (3%)
Query: 22 DDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKIC 81
D+EE LF+ ID L GIN D+KKL+ GI T G+ M T++ L +KGLSEAKV+KI
Sbjct: 18 DEEESLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIK 77
Query: 82 EAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQ 141
EAA K++ G++T + +RK V ITTGSQ D+LLGGGIE+ AITEAFGEFR+GKTQ
Sbjct: 78 EAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQ 137
Query: 142 LAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201
L+HTLCV QLP GK+ +IDTE TFRPDR+ IA+RF +D AVLDN++YARAY
Sbjct: 138 LSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197
Query: 202 TYEHQYNLLLGLAAKMSEEP--FRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLT 259
T EHQ LL +AAK EE F+LLI+DS++ALFRVDF+GRGELA+RQQKL QMLSRL
Sbjct: 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQ 257
Query: 260 KISEEFNVAVYMTNQVIADPGGGV-FISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCK 318
KISEE+NVAV++TNQ+ ADPG + F +DPKKP GGH+LAHA T R+ RKG+GE R+ K
Sbjct: 258 KISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAK 317
Query: 319 VFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
++D+P +PE EA IT GGI DAK+
Sbjct: 318 IYDSPEMPENEAT--------FAITAGGIGDAKE 343
>pdb|2ZJB|A Chain A, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
pdb|2ZJB|B Chain B, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
Length = 343
Score = 390 bits (1001), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/334 (59%), Positives = 246/334 (73%), Gaps = 11/334 (3%)
Query: 22 DDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKIC 81
D+EE LF+ ID L GIN D+KKL+ GI T G+ M T++ L +KGLSEAKV+KI
Sbjct: 18 DEEESLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIK 77
Query: 82 EAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQ 141
EAA K++ G++T + +RK V ITTGSQ D+LLGGGIE+ AITEAFGEFR+GKTQ
Sbjct: 78 EAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQ 137
Query: 142 LAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201
L+HTLCV QLP GK+ +IDTE TFRPDR+ IA+RF +D AVLDN++YARAY
Sbjct: 138 LSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197
Query: 202 TYEHQYNLLLGLAAKMSEEP--FRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLT 259
T EHQ LL +AAK EE F+LLI+DS++ALFRVDF+GRGELA+RQQKL QMLSRL
Sbjct: 198 TSEHQVELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQ 257
Query: 260 KISEEFNVAVYMTNQVIADPGGGV-FISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCK 318
KISEE+NVAV++TNQ+ ADPG + F +DPKKP GGH+LAHA T R+ RKG+GE R+ K
Sbjct: 258 KISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAK 317
Query: 319 VFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
++D+P +PE EA IT GGI DAK+
Sbjct: 318 IYDSPEMPENEAT--------FAITAGGIGDAKE 343
>pdb|3LDA|A Chain A, Yeast Rad51 H352y Filament Interface Mutant
Length = 400
Score = 314 bits (805), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 167/327 (51%), Positives = 230/327 (70%), Gaps = 3/327 (0%)
Query: 8 EEQSQLQLVEREDIDDEEDL--FEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKH 65
+EQ++ Q ++ DE L F I+KL GI DVKKL+++G++T + +K
Sbjct: 58 QEQAEAQGEMEDEAYDEAALGSFVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKD 117
Query: 66 LTGIKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIET 125
L IKG+SEAK +K+ A ++V G++T +D +RR +I +TTGS+ LD LLGGG+ET
Sbjct: 118 LLEIKGISEAKADKLLNEAARLVPMGFVTAADFHMRRSELICLTTGSKNLDTLLGGGVET 177
Query: 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFG 185
G+ITE FGEFR+GK+QL HTL V Q+P ++ GG GK YIDTEGTFRP R+V IA+RFG
Sbjct: 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFG 237
Query: 186 MDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELA 245
+DP L+N+ YARAY +HQ LL A MSE F L++VDSV+AL+R DF+GRGEL+
Sbjct: 238 LDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELS 297
Query: 246 DRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGV-FISDPKKPAGGHVLAHAVTIR 304
RQ L + + L +++++F VAV +TNQV+A GG+ F DPKKP GG+++A++ T R
Sbjct: 298 ARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTR 357
Query: 305 LMFRKGKGEQRVCKVFDAPNLPEAEAI 331
L F+KGKG QR+CKV D+P LPEAE +
Sbjct: 358 LGFKKGKGCQRLCKVVDSPCLPEAECV 384
>pdb|1SZP|A Chain A, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|B Chain B, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|C Chain C, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|D Chain D, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|E Chain E, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|F Chain F, A Crystal Structure Of The Rad51 Filament
Length = 321
Score = 313 bits (803), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 162/306 (52%), Positives = 219/306 (71%), Gaps = 1/306 (0%)
Query: 31 IDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNF 90
I+KL GI DVKKL+++G++T + +K L IKG+SEAK +K+ A ++V
Sbjct: 4 IEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVPM 63
Query: 91 GYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCT 150
G++T +D +RR +I +TTGS+ LD LLGGG+ETG+ITE FGEFR+GK+QL HTL V
Sbjct: 64 GFVTAADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTC 123
Query: 151 QLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLL 210
Q+P ++ GG GK YIDTEGTFRP R+V IA+RFG+DP L+N+ YARAY +HQ LL
Sbjct: 124 QIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLL 183
Query: 211 LGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVY 270
A MSE F L++VDSV+AL+R DF+GRGEL+ RQ L + + L +++++F VAV
Sbjct: 184 DAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVV 243
Query: 271 MTNQVIADPGGGV-FISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAE 329
+TNQV+A GG+ F DPKKP GG+++AH+ T RL F+KGKG QR+CKV D+P LPEAE
Sbjct: 244 VTNQVVAQVDGGMAFNPDPKKPTGGNIMAHSSTTRLGFKKGKGCQRLCKVVDSPCLPEAE 303
Query: 330 AISFSY 335
+ Y
Sbjct: 304 CVFAIY 309
>pdb|1PZN|A Chain A, Rad51 (Rada)
pdb|1PZN|B Chain B, Rad51 (Rada)
pdb|1PZN|C Chain C, Rad51 (Rada)
pdb|1PZN|D Chain D, Rad51 (Rada)
pdb|1PZN|E Chain E, Rad51 (Rada)
pdb|1PZN|F Chain F, Rad51 (Rada)
pdb|1PZN|G Chain G, Rad51 (Rada)
Length = 349
Score = 274 bits (700), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 149/318 (46%), Positives = 203/318 (63%), Gaps = 16/318 (5%)
Query: 38 GINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSD 97
G+ +KL++AG T + + + L + G+SE KI +AA K N G +D
Sbjct: 42 GVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFXRAD 101
Query: 98 ALLRRKAVI-KITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNM 156
L+++A I +I+TGS++LD+LLGGGIET AITE FGEF SGKTQLAHTL V QLP
Sbjct: 102 EYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVXVQLPPEE 161
Query: 157 RGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAK 216
G NG V +IDTE TFRP+RI IA+ G+DP VL +I ARA+ HQ L+ K
Sbjct: 162 GGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQXLLVQQAEDK 221
Query: 217 MSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYM 271
+ E P +LLIVDS+ + FR ++ GRG LA+RQQKL + L+ L +++ +++AV++
Sbjct: 222 IKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFV 281
Query: 272 TNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAI 331
TNQV A P F DP +P GGH+LAH+ T+R+ RKGKG +R+ ++ DAP+LPE EA+
Sbjct: 282 TNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAV 339
Query: 332 SFSYHIILIKITPGGIAD 349
FS IT GI D
Sbjct: 340 -FS-------ITEKGIED 349
>pdb|1N0W|A Chain A, Crystal Structure Of A Rad51-Brca2 Brc Repeat Complex
Length = 243
Score = 267 bits (683), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 135/249 (54%), Positives = 175/249 (70%), Gaps = 9/249 (3%)
Query: 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVA 164
+I+ITTGS+ LD+LL GGIETG+ITE FGEFR+GKTQ+ HTL V QLP + GG GK
Sbjct: 3 IIQITTGSKELDKLLQGGIETGSITEXFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAX 62
Query: 165 YIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRL 224
YIDTEGTFRP+R++ +AER+G+ VLDN+ YARA+ +HQ LL +A E + L
Sbjct: 63 YIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAXXVESRYAL 122
Query: 225 LIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIAD-PGGGV 283
LIVDS AL+R D++GRGEL+ RQ L + L L ++++EF VAV +TNQV+A G
Sbjct: 123 LIVDSATALYRTDYSGRGELSARQXHLARFLRXLLRLADEFGVAVVITNQVVAQVDGAAX 182
Query: 284 FISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKIT 343
F +DPKKP GG+++AHA T RL RKG+GE R+CK++D+P LPEAEA I
Sbjct: 183 FAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEA--------XFAIN 234
Query: 344 PGGIADAKD 352
G+ DAKD
Sbjct: 235 ADGVGDAKD 243
>pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2Z43|A Chain A, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|B Chain B, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|C Chain C, Structure Of A Twinned Crystal Of Rada
pdb|2ZUB|A Chain A, Left Handed Rada
pdb|2ZUB|B Chain B, Left Handed Rada
pdb|2ZUC|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUC|B Chain B, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|B Chain B, Crystal Structure Of Left-Handed Rada Filament
Length = 324
Score = 234 bits (596), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 131/316 (41%), Positives = 191/316 (60%), Gaps = 11/316 (3%)
Query: 38 GINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSD 97
GI+ + KL +AG + L + + + L+ G+ + +KI + A ++ + T +
Sbjct: 19 GISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALE 78
Query: 98 ALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMR 157
R V KI+TGSQALD LL GGIET +TE FGEF SGKTQL H L V QLP
Sbjct: 79 VKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138
Query: 158 GGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKM 217
G +GK YIDTEGTFR +RI +A+ G+D V++NI Y RA +HQ ++ L +
Sbjct: 139 GLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELV 198
Query: 218 SEEP-FRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276
S++P +L++VDSV + FR ++ GR LA RQQKL + L +LT+++E +++AV +TNQV+
Sbjct: 199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258
Query: 277 ADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYH 336
A P +F DP GGH L H IR+ +K +G +R+ +V DAP+LPE E
Sbjct: 259 ARP--DMFYGDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGE------- 309
Query: 337 IILIKITPGGIADAKD 352
++ +T GI DA++
Sbjct: 310 -VVFALTEEGIRDAEE 324
>pdb|4B2I|A Chain A, Humanised Monomeric Rada In Complex With Indazole
pdb|4B2L|A Chain A, Humanised Monomeric Rada In Complex With L-methylester
Tryptophan
pdb|4B32|A Chain A, Humanised Monomeric Rada In Complex With Napht-1-ol
pdb|4B33|A Chain A, Humanised Monomeric Rada In Complex With Napht-2-ol
pdb|4B34|A Chain A, Humanised Monomeric Rada In Complex With 2-amino
Benzothiazole
pdb|4B35|A Chain A, Humanised Monomeric Rada In Complex With 4-methylester
Indole
pdb|4B3C|A Chain A, Humanised Monomeric Rada In Complex With 5-hydroxy Indole
pdb|4B3D|A Chain A, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3D|C Chain C, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3B|A Chain A, Humanised Monomeric Rada In Complex With Fhta Tetrapeptide
Length = 231
Score = 230 bits (587), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 126/249 (50%), Positives = 166/249 (66%), Gaps = 29/249 (11%)
Query: 107 KITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYI 166
+I+TGS++LD+LLGGGIET AITE FGEF SGKTQLAHTL V QLP G NG V +I
Sbjct: 6 RISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVMWI 65
Query: 167 DTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEE------ 220
DTE TFRP+RI IA+ G+DP VL +I YARA+ HQ LL+ A M +E
Sbjct: 66 DTENTFRPERIREIAQNRGLDPDEVLKHIAYARAFNSNHQM-LLVQQAEDMIKELLNTDR 124
Query: 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPG 280
P +LLIVDS+ + FR ++ GRG LA+RQQKL + L+ L +++ +++AV++TNQV A+
Sbjct: 125 PVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAN-- 182
Query: 281 GGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILI 340
GGH+LAH+ T+R+ RKGKG +R+ ++ DAP+LPE EA+ FS
Sbjct: 183 ------------GGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAV-FS------ 223
Query: 341 KITPGGIAD 349
IT GI D
Sbjct: 224 -ITEKGIED 231
>pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal
Structure Of A Crenarchaeal Rada
Length = 324
Score = 229 bits (583), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/316 (41%), Positives = 186/316 (58%), Gaps = 11/316 (3%)
Query: 38 GINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSD 97
GI+ + KL +AG + L + + + L+ G+ + +KI + A ++ + T +
Sbjct: 19 GISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALE 78
Query: 98 ALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMR 157
R V KI+TGSQALD LL GGIET TE FGEF SGKTQL H L V QLP
Sbjct: 79 VKKERXNVKKISTGSQALDGLLAGGIETRTXTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138
Query: 158 GGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKM 217
G +GK YIDTEGTFR +RI A+ G+D V +NI Y RA +HQ ++ L +
Sbjct: 139 GLSGKAVYIDTEGTFRWERIENXAKALGLDIDNVXNNIYYIRAINTDHQIAIVDDLQELV 198
Query: 218 SEEP-FRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276
S++P +L++VDSV + FR ++ GR LA RQQKL + L +LT+++E +++AV +TNQV
Sbjct: 199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVX 258
Query: 277 ADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYH 336
A P F DP GGH L H IR+ +K +G +R+ +V DAP+LPE E
Sbjct: 259 ARP--DXFYGDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGE------- 309
Query: 337 IILIKITPGGIADAKD 352
++ +T GI DA++
Sbjct: 310 -VVFALTEEGIRDAEE 324
>pdb|4A6P|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
pdb|4A6X|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A6X|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A74|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A74|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A7O|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Adp
Length = 231
Score = 227 bits (578), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 123/248 (49%), Positives = 163/248 (65%), Gaps = 27/248 (10%)
Query: 107 KITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYI 166
+I+TGS++LD+LLGGGIET AITE FGEF SGKTQLAHTL V QLP G NG V +I
Sbjct: 6 RISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWI 65
Query: 167 DTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EP 221
DTE TFRP+RI IA+ G+DP VL +I ARA+ HQ L+ K+ E P
Sbjct: 66 DTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRP 125
Query: 222 FRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGG 281
+LLIVDS+ + FR ++ GRG LA+RQQKL + L+ L +++ +++AV++TNQV A+
Sbjct: 126 VKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAN--- 182
Query: 282 GVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIK 341
GGH+LAH+ T+R+ RKGKG +R+ ++ DAP+LPE EA+ FS
Sbjct: 183 -----------GGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAV-FS------- 223
Query: 342 ITPGGIAD 349
IT GI D
Sbjct: 224 ITEKGIED 231
>pdb|1T4G|A Chain A, Atpase In Complex With Amp-pnp
pdb|1XU4|A Chain A, Atpase In Complex With Amp-Pnp, Magnesium And Potassium
Co-F
pdb|2FPK|A Chain A, Rada Recombinase In Complex With Adp
pdb|2FPL|A Chain A, Rada Recombinase In Complex With Amp-Pnp And Low
Concentration Of K+
pdb|2FPM|A Chain A, Rada Recombinase In Complex With Amp-Pnp And High
Concentration Of K+
pdb|2B21|A Chain A, Rada Recombinase In Complex With Amppnp At Ph 6.0
pdb|2I1Q|A Chain A, Rada Recombinase In Complex With Calcium
pdb|3FYH|A Chain A, Recombinase In Complex With Adp And Metatungstate
Length = 322
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/323 (39%), Positives = 187/323 (57%), Gaps = 21/323 (6%)
Query: 38 GINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSD 97
G+ +KL +AG + T LT I+G+SE K+ A + + G+ +G D
Sbjct: 10 GVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGFKSGID 69
Query: 98 ALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNM- 156
L +R V K++T S LD +LGGG+E+ ++TE G F SGKTQ+ H CV Q P +
Sbjct: 70 LLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLF 129
Query: 157 -------RG--GNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQY 207
+G K YIDTEGTFRP+RI+ +AE G+D VLDN ARAY + Q
Sbjct: 130 YDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQM 189
Query: 208 NLLLGLAAKMSE-EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFN 266
+ + E +L+++DS+ + FR ++TGRG+LA+RQQKLG+ ++ L K+++ FN
Sbjct: 190 LFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFN 249
Query: 267 VAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLP 326
V +TNQV A P F ++ GGH++ HA T R RKGKG++RV K++D+P+LP
Sbjct: 250 CVVLVTNQVSAKP--DAFFGMAEQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLP 307
Query: 327 EAEAISFSYHIILIKITPGGIAD 349
+AEAI +IT GI D
Sbjct: 308 DAEAI--------FRITEKGIQD 322
>pdb|2F1H|A Chain A, Recombinase In Complex With Amp-pnp And Potassium
pdb|2F1I|A Chain A, Recombinase In Complex With Amp-pnp
pdb|2F1J|A Chain A, Recombinase In Complex With Adp
Length = 322
Score = 224 bits (570), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 128/323 (39%), Positives = 187/323 (57%), Gaps = 21/323 (6%)
Query: 38 GINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSD 97
G+ +KL +AG + T LT I+G+SE K+ A + + G+ +G D
Sbjct: 10 GVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGFKSGID 69
Query: 98 ALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNM- 156
L +R V K++T S LD +LGGG+E+ ++TE G F SGKTQ+ H CV Q P +
Sbjct: 70 LLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLF 129
Query: 157 -------RG--GNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQY 207
+G K YIDT+GTFRP+RI+ +AE G+D VLDN ARAY + Q
Sbjct: 130 YDEEAVSKGEVAQPKAVYIDTDGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQM 189
Query: 208 NLLLGLAAKMSE-EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFN 266
+ + E +L+++DS+ + FR ++TGRG+LA+RQQKLG+ ++ L K+++ FN
Sbjct: 190 LFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFN 249
Query: 267 VAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLP 326
V +TNQV A P F ++ GGH++ HA T R RKGKG++RV K++D+P+LP
Sbjct: 250 CVVLVTNQVSAKP--DAFFGMAEQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLP 307
Query: 327 EAEAISFSYHIILIKITPGGIAD 349
+AEAI +IT GI D
Sbjct: 308 DAEAI--------FRITEKGIQD 322
>pdb|3NTU|A Chain A, Rada Recombinase D302k Mutant In Complex With Amp-Pnp
Length = 319
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/323 (39%), Positives = 186/323 (57%), Gaps = 21/323 (6%)
Query: 38 GINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSD 97
G+ +KL +AG + T LT I+G+SE K+ A + + G+ +G D
Sbjct: 7 GVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGFKSGID 66
Query: 98 ALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNM- 156
L +R V K++T S LD +LGGG+E+ ++TE G F SGKTQ+ H CV Q P +
Sbjct: 67 LLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLF 126
Query: 157 -------RG--GNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQY 207
+G K YIDTEGTFRP+RI+ +AE G+D VLDN ARAY + Q
Sbjct: 127 YDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQM 186
Query: 208 NLLLGLAAKMSE-EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFN 266
+ + E +L+++DS+ + FR ++TGRG+LA+RQQKLG+ ++ L K+++ FN
Sbjct: 187 LFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFN 246
Query: 267 VAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLP 326
V +TNQV A P F ++ GGH++ HA T R RKGKG++RV K++ +P+LP
Sbjct: 247 CVVLVTNQVSAKP--DAFFGMAEQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYKSPHLP 304
Query: 327 EAEAISFSYHIILIKITPGGIAD 349
+AEAI +IT GI D
Sbjct: 305 DAEAI--------FRITEKGIQD 319
>pdb|3ETL|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp
pdb|3EW9|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp And Potassium Ions
pdb|3EWA|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp And Ammonium Ions
Length = 322
Score = 211 bits (537), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 187/327 (57%), Gaps = 29/327 (8%)
Query: 38 GINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSD 97
G+ KL + G + T LT I+G+SE K+ AA + + G+ +G +
Sbjct: 10 GVGPSTADKLIEGGYLDFMKIATATIGELTDIEGISEKAAAKMIMAARDLCDLGFKSGVE 69
Query: 98 ALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMR 157
L +R++V +++TGS LD +L GGIE+ ++TE G F SGKTQ+ H CV Q+ +
Sbjct: 70 LLKQRQSVWRLSTGSTELDTVLAGGIESQSVTEFAGMFGSGKTQIMHQTCVNLQMREKIF 129
Query: 158 GGNG----------KVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQY 207
K YIDTEGTFRP+R+V +AE G+D VLDN ARAY + Q
Sbjct: 130 ADLEGVVEEELEAPKAVYIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFVARAYNSDMQ- 188
Query: 208 NLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKIS 262
+ A K+ + +L+I+DS+ + FR +FTGRG+LA+RQQKLG+ ++ L K++
Sbjct: 189 ---MLFAEKIEDLIKGGNNIKLVIIDSLTSTFRNEFTGRGKLAERQQKLGRHMATLNKLA 245
Query: 263 EEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDA 322
+ +N V +TNQV A P + ++ GGHV+ HA T R RK KG++RV K++D+
Sbjct: 246 DLYNCIVLVTNQVAAKPDA--YFGVAEQAIGGHVVGHAATFRFFLRKSKGDKRVAKLYDS 303
Query: 323 PNLPEAEAISFSYHIILIKITPGGIAD 349
P+LP++EA+ +IT GI D
Sbjct: 304 PHLPDSEAV--------FRITEKGIQD 322
>pdb|4DC9|A Chain A, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|B Chain B, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|C Chain C, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|D Chain D, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|E Chain E, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|F Chain F, Hexameric Ring Of Methanococcus Voltae Rada
Length = 266
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/273 (42%), Positives = 166/273 (60%), Gaps = 21/273 (7%)
Query: 88 VNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLC 147
++ G+ +G D L +R V K++T S LD +LGGG+E+ ++TE G F SGKTQ+ H C
Sbjct: 4 MDLGFKSGIDLLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSC 63
Query: 148 VCTQLPTNM--------RG--GNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIY 197
V Q P + +G K YIDTEGTFRP+RI+ +AE G+D VLDN
Sbjct: 64 VNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFV 123
Query: 198 ARAYTYEHQYNLLLGLAAKMSE-EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLS 256
ARAY + Q + + E +L+++DS+ + FR ++TGRG+LA+RQQKLG+ ++
Sbjct: 124 ARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMA 183
Query: 257 RLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRV 316
L K+++ FN V +TNQV A P F ++ GGH++ HA T R RKGKG++RV
Sbjct: 184 TLNKLADLFNCVVLVTNQVSAKPDA--FFGMAEQAIGGHIVGHAATFRFFVRKGKGDKRV 241
Query: 317 CKVFDAPNLPEAEAISFSYHIILIKITPGGIAD 349
K++D+P+LP+AEAI +IT GI D
Sbjct: 242 AKLYDSPHLPDAEAI--------FRITEKGIQD 266
>pdb|2GDJ|A Chain A, Delta-62 Rada Recombinase In Complex With Amp-Pnp And
Magnesium
Length = 264
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/272 (42%), Positives = 165/272 (60%), Gaps = 21/272 (7%)
Query: 89 NFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCV 148
+ G+ +G D L +R V K++T S LD +LGGG+E+ ++TE G F SGKTQ+ H CV
Sbjct: 3 HMGFKSGIDLLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 62
Query: 149 CTQLPTNM--------RG--GNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYA 198
Q P + +G K YIDTEGTFRP+RI+ +AE G+D VLDN A
Sbjct: 63 NLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVA 122
Query: 199 RAYTYEHQYNLLLGLAAKMSE-EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSR 257
RAY + Q + + E +L+++DS+ + FR ++TGRG+LA+RQQKLG+ ++
Sbjct: 123 RAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMAT 182
Query: 258 LTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVC 317
L K+++ FN V +TNQV A P F ++ GGH++ HA T R RKGKG++RV
Sbjct: 183 LNKLADLFNCVVLVTNQVSAKP--DAFFGMAEQAIGGHIVGHAATFRFFVRKGKGDKRVA 240
Query: 318 KVFDAPNLPEAEAISFSYHIILIKITPGGIAD 349
K++D+P+LP+AEAI +IT GI D
Sbjct: 241 KLYDSPHLPDAEAI--------FRITEKGIQD 264
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 94/171 (54%), Gaps = 14/171 (8%)
Query: 108 ITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYID 167
++TG+++LD LLGGG G +T+ +G + SGKT LA L T + G KVAY+D
Sbjct: 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLA--------LQTGLLSGK-KVAYVD 52
Query: 168 TEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIV 227
TEG F P+R+V +AE G++P L I ++ Q ++G K + F L++V
Sbjct: 53 TEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRR-VIGSLKKTVDSNFALVVV 111
Query: 228 DSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIAD 278
DS+ A +R + G +A+ L + L L I+ + N+ V + NQV D
Sbjct: 112 DSITAHYRAEENRSGLIAE----LSRQLQVLLWIARKHNIPVIVINQVHFD 158
>pdb|1B22|A Chain A, Rad51 (N-Terminal Domain)
Length = 114
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Query: 12 QLQLVEREDIDDEEDLF--EAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGI 69
Q+QL D EE+ F + I +L GINA DVKKL++AG +T + KK L I
Sbjct: 4 QMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINI 63
Query: 70 KGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELL 119
KG+SEAK +KI A K+V G+ T ++ RR +I+ITTGS+ LD+LL
Sbjct: 64 KGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLL 113
>pdb|3CMT|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMT|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1706
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 111/264 (42%), Gaps = 33/264 (12%)
Query: 55 CNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYIT--GSDALLRRKAVIKITTGS 112
G M HT ++ I + + EK G I G D R V I+TGS
Sbjct: 661 STGSMGHTTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGED---RSMDVETISTGS 717
Query: 113 QALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171
+LD LG GG+ G I E +G SGKT L + Q R G A+ID E
Sbjct: 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----REGK-TCAFIDAEHA 771
Query: 172 FRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVI 231
P A + G+D +DN++ ++ T E + LA + + +++VDSV
Sbjct: 772 LDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGAVD---VIVVDSVA 820
Query: 232 ALF-RVDFTGRGELADRQQKLG-----QMLSRLTKISEEFNVAVYMTNQVIADPGGGVFI 285
AL + + GE+ D L Q + +L ++ N + NQ+ GV
Sbjct: 821 ALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI--GVMF 876
Query: 286 SDPKKPAGGHVLAHAVTIRLMFRK 309
+P+ GG+ L ++RL R+
Sbjct: 877 GNPETTTGGNALKFYASVRLDIRR 900
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 31/226 (13%)
Query: 91 GYITGSDALLRRKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVC 149
G + G D R V I+TGS +LD LG GG+ G I E +G SGKT L +
Sbjct: 1 GAMHGED---RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 57
Query: 150 TQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNL 209
Q R G A+ID E P A + G+D +DN++ ++ T E +
Sbjct: 58 AQ-----REGK-TCAFIDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEI 103
Query: 210 LLGLAAKMSEEPFRLLIVDSVIALF-RVDFTGRGELADRQQKLG-----QMLSRLTKISE 263
LA + + +++VDSV AL + + GE+ D L Q + +L +
Sbjct: 104 CDALARSGAVD---VIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLK 158
Query: 264 EFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309
+ N + NQ+ GV +P+ GG+ L ++RL R+
Sbjct: 159 QSNTLLIFINQIRMKI--GVMFGNPETTTGGNALKFYASVRLDIRR 202
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 28/216 (12%)
Query: 101 RRKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG 159
R V I+TGS +LD LG GG+ G I E +G SGKT L + Q R G
Sbjct: 357 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----REG 411
Query: 160 NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE 219
A+ID E P A + G+D +DN++ ++ T E + LA +
Sbjct: 412 K-TCAFIDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGAV 462
Query: 220 EPFRLLIVDSVIALF-RVDFTGRGELADRQQKLG-----QMLSRLTKISEEFNVAVYMTN 273
+ +++VDSV AL + + GE+ D L Q + +L ++ N + N
Sbjct: 463 D---VIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 517
Query: 274 QVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309
Q+ GV +P+ GG+ L ++RL R+
Sbjct: 518 QIRMKI--GVMFGNPETTTGGNALKFYASVRLDIRR 551
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 28/216 (12%)
Query: 101 RRKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG 159
R V I+TGS +LD LG GG+ G I E +G SGKT L + Q R G
Sbjct: 1056 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----REG 1110
Query: 160 NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE 219
A+ID E P A + G+D +DN++ ++ T E + LA +
Sbjct: 1111 K-TCAFIDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGAV 1161
Query: 220 EPFRLLIVDSVIALF-RVDFTGRGELADRQQKLG-----QMLSRLTKISEEFNVAVYMTN 273
+ +++VDSV AL + + GE+ D L Q + +L ++ N + N
Sbjct: 1162 D---VIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1216
Query: 274 QVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309
Q+ GV +P+ GG+ L ++RL R+
Sbjct: 1217 QIRMKI--GVMFGNPETTTGGNALKFYASVRLDIRR 1250
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 28/216 (12%)
Query: 101 RRKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG 159
R V I+TGS +LD LG GG+ G I E +G SGKT L + Q R G
Sbjct: 1405 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----REG 1459
Query: 160 NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE 219
A+ID E P A + G+D +DN++ ++ T E + LA +
Sbjct: 1460 K-TCAFIDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGAV 1510
Query: 220 EPFRLLIVDSVIALF-RVDFTGRGELADRQQKLG-----QMLSRLTKISEEFNVAVYMTN 273
+ +++VDSV AL + + GE+ D L Q + +L ++ N + N
Sbjct: 1511 D---VIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1565
Query: 274 QVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309
Q+ GV +P+ GG+ L ++RL R+
Sbjct: 1566 QIRMKI--GVMFGNPETTTGGNALKFYASVRLDIRR 1599
>pdb|3CMV|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|B Chain B, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|E Chain E, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|F Chain F, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|G Chain G, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|H Chain H, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1357
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 111/264 (42%), Gaps = 33/264 (12%)
Query: 55 CNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYIT--GSDALLRRKAVIKITTGS 112
G M HT ++ I + + EK G I G D R V I+TGS
Sbjct: 661 STGSMGHTTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGED---RSMDVETISTGS 717
Query: 113 QALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171
+LD LG GG+ G I E +G SGKT L + Q R G A+ID E
Sbjct: 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----REGK-TCAFIDAEHA 771
Query: 172 FRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVI 231
P A + G+D +DN++ ++ T E + LA + + +++VDSV
Sbjct: 772 LDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGAVD---VIVVDSVA 820
Query: 232 ALF-RVDFTGRGELADRQQKLG-----QMLSRLTKISEEFNVAVYMTNQVIADPGGGVFI 285
AL + + GE+ D L Q + +L ++ N + NQ+ GV
Sbjct: 821 ALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI--GVMF 876
Query: 286 SDPKKPAGGHVLAHAVTIRLMFRK 309
+P+ GG+ L ++RL R+
Sbjct: 877 GNPETTTGGNALKFYASVRLDIRR 900
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 31/226 (13%)
Query: 91 GYITGSDALLRRKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVC 149
G + G D R V I+TGS +LD LG GG+ G I E +G SGKT L +
Sbjct: 1 GAMHGED---RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 57
Query: 150 TQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNL 209
Q R G A+ID E P A + G+D +DN++ ++ T E +
Sbjct: 58 AQ-----REGK-TCAFIDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEI 103
Query: 210 LLGLAAKMSEEPFRLLIVDSVIALF-RVDFTGRGELADRQQKLG-----QMLSRLTKISE 263
LA + + +++VDSV AL + + GE+ D L Q + +L +
Sbjct: 104 CDALARSGAVD---VIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLK 158
Query: 264 EFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309
+ N + NQ+ GV +P+ GG+ L ++RL R+
Sbjct: 159 QSNTLLIFINQIRMKI--GVMFGNPETTTGGNALKFYASVRLDIRR 202
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 28/216 (12%)
Query: 101 RRKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG 159
R V I+TGS +LD LG GG+ G I E +G SGKT L + Q R G
Sbjct: 357 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----REG 411
Query: 160 NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE 219
A+ID E P A + G+D +DN++ ++ T E + LA +
Sbjct: 412 K-TCAFIDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGAV 462
Query: 220 EPFRLLIVDSVIALF-RVDFTGRGELADRQQKLG-----QMLSRLTKISEEFNVAVYMTN 273
+ +++VDSV AL + + GE+ D L Q + +L ++ N + N
Sbjct: 463 D---VIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 517
Query: 274 QVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309
Q+ GV +P+ GG+ L ++RL R+
Sbjct: 518 QIRMKI--GVMFGNPETTTGGNALKFYASVRLDIRR 551
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 28/216 (12%)
Query: 101 RRKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG 159
R V I+TGS +LD LG GG+ G I E +G SGKT L + Q R G
Sbjct: 1056 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----REG 1110
Query: 160 NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE 219
A+ID E P A + G+D +DN++ ++ T E + LA +
Sbjct: 1111 K-TCAFIDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGAV 1161
Query: 220 EPFRLLIVDSVIALF-RVDFTGRGELADRQQKLG-----QMLSRLTKISEEFNVAVYMTN 273
+ +++VDSV AL + + GE+ D L Q + +L ++ N + N
Sbjct: 1162 D---VIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1216
Query: 274 QVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309
Q+ GV +P+ GG+ L ++RL R+
Sbjct: 1217 QIRMKI--GVMFGNPETTTGGNALKFYASVRLDIRR 1250
>pdb|1N03|A Chain A, Model For Active Reca Filament
pdb|1N03|B Chain B, Model For Active Reca Filament
pdb|1N03|C Chain C, Model For Active Reca Filament
pdb|1N03|D Chain D, Model For Active Reca Filament
pdb|1N03|E Chain E, Model For Active Reca Filament
pdb|1N03|F Chain F, Model For Active Reca Filament
pdb|1N03|G Chain G, Model For Active Reca Filament
pdb|1REA|A Chain A, Structure Of The Reca Protein-Adp Complex
pdb|2REB|A Chain A, The Structure Of The E. Coli Reca Protein Monomer And
Polymer
Length = 352
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 28/216 (12%)
Query: 101 RRKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG 159
R V I+TGS +LD LG GG+ G I E +G SGKT L + Q R G
Sbjct: 33 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----REG 87
Query: 160 NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE 219
A+ID E P A + G+D +DN++ ++ T E + LA +
Sbjct: 88 K-TCAFIDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGAV 138
Query: 220 EPFRLLIVDSVIALF-RVDFTGRGELADRQQKLG-----QMLSRLTKISEEFNVAVYMTN 273
+ +++VDSV AL + + GE+ D L Q + +L ++ N + N
Sbjct: 139 D---VIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 193
Query: 274 QVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309
Q+ GV +P+ GG+ L ++RL R+
Sbjct: 194 QIRMKI--GVMFGNPETTTGGNALKFYASVRLDIRR 227
>pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy
pdb|2REC|B Chain B, Reca Hexamer Model, Electron Microscopy
pdb|2REC|C Chain C, Reca Hexamer Model, Electron Microscopy
pdb|2REC|D Chain D, Reca Hexamer Model, Electron Microscopy
pdb|2REC|E Chain E, Reca Hexamer Model, Electron Microscopy
pdb|2REC|F Chain F, Reca Hexamer Model, Electron Microscopy
Length = 353
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 28/216 (12%)
Query: 101 RRKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG 159
R V I+TGS +LD LG GG+ G I E +G SGKT L + Q R G
Sbjct: 34 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----REG 88
Query: 160 NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE 219
A+ID E P A + G+D +DN++ ++ T E + LA +
Sbjct: 89 K-TCAFIDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGAV 139
Query: 220 EPFRLLIVDSVIALF-RVDFTGRGELADRQQKLG-----QMLSRLTKISEEFNVAVYMTN 273
+ +++VDSV AL + + GE+ D L Q + +L ++ N + N
Sbjct: 140 D---VIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 194
Query: 274 QVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309
Q+ GV +P+ GG+ L ++RL R+
Sbjct: 195 QIRMKI--GVMFGNPETTTGGNALKFYASVRLDIRR 228
>pdb|3CMU|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 2050
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 111/264 (42%), Gaps = 33/264 (12%)
Query: 55 CNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYIT--GSDALLRRKAVIKITTGS 112
G M HT ++ I + + EK G I G D R V I+TGS
Sbjct: 661 STGSMGHTTGAMSAIDENKQKALAAALGQIEKQFGKGSIMRLGED---RSMDVETISTGS 717
Query: 113 QALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171
+LD LG GG+ G I E +G SGKT L + Q R G A+ID E
Sbjct: 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----REGK-TCAFIDAEHA 771
Query: 172 FRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVI 231
P A + G+D +DN++ ++ T E + LA + + +++VDSV
Sbjct: 772 LDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGAVD---VIVVDSVA 820
Query: 232 ALF-RVDFTGRGELADRQQKLG-----QMLSRLTKISEEFNVAVYMTNQVIADPGGGVFI 285
AL + + GE+ D L Q + +L ++ N + NQ+ GV
Sbjct: 821 ALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI--GVMF 876
Query: 286 SDPKKPAGGHVLAHAVTIRLMFRK 309
+P+ GG+ L ++RL R+
Sbjct: 877 GNPETTTGGNALKFYASVRLDIRR 900
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 28/216 (12%)
Query: 101 RRKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG 159
R V I+TGS +LD LG GG+ G I E +G SGKT L + Q R G
Sbjct: 8 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----REG 62
Query: 160 NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE 219
A+ID E P A + G+D +DN++ ++ T E + LA +
Sbjct: 63 K-TCAFIDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGAV 113
Query: 220 EPFRLLIVDSVIALF-RVDFTGRGELADRQQKLG-----QMLSRLTKISEEFNVAVYMTN 273
+ +++VDSV AL + + GE+ D L Q + +L ++ N + N
Sbjct: 114 D---VIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 168
Query: 274 QVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309
Q+ GV +P+ GG+ L ++RL R+
Sbjct: 169 QIRMKI--GVMFGNPETTTGGNALKFYASVRLDIRR 202
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 28/216 (12%)
Query: 101 RRKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG 159
R V I+TGS +LD LG GG+ G I E +G SGKT L + Q R G
Sbjct: 357 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----REG 411
Query: 160 NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE 219
A+ID E P A + G+D +DN++ ++ T E + LA +
Sbjct: 412 K-TCAFIDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGAV 462
Query: 220 EPFRLLIVDSVIALF-RVDFTGRGELADRQQKLG-----QMLSRLTKISEEFNVAVYMTN 273
+ +++VDSV AL + + GE+ D L Q + +L ++ N + N
Sbjct: 463 D---VIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 517
Query: 274 QVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309
Q+ GV +P+ GG+ L ++RL R+
Sbjct: 518 QIRMKI--GVMFGNPETTTGGNALKFYASVRLDIRR 551
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 28/216 (12%)
Query: 101 RRKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG 159
R V I+TGS +LD LG GG+ G I E +G SGKT L + Q R G
Sbjct: 1055 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----REG 1109
Query: 160 NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE 219
A+ID E P A + G+D +DN++ ++ T E + LA +
Sbjct: 1110 K-TCAFIDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGAV 1160
Query: 220 EPFRLLIVDSVIALF-RVDFTGRGELADRQQKLG-----QMLSRLTKISEEFNVAVYMTN 273
+ +++VDSV AL + + GE+ D L Q + +L ++ N + N
Sbjct: 1161 D---VIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1215
Query: 274 QVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309
Q+ GV +P+ GG+ L ++RL R+
Sbjct: 1216 QIRMKI--GVMFGNPETTTGGNALKFYASVRLDIRR 1249
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 28/216 (12%)
Query: 101 RRKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG 159
R V I+TGS +LD LG GG+ G I E +G SGKT L + Q R G
Sbjct: 1401 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----REG 1455
Query: 160 NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE 219
A+ID E P A + G+D +DN++ ++ T E + LA +
Sbjct: 1456 K-TCAFIDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGAV 1506
Query: 220 EPFRLLIVDSVIALF-RVDFTGRGELADRQQKLG-----QMLSRLTKISEEFNVAVYMTN 273
+ +++VDSV AL + + GE+ D L Q + +L ++ N + N
Sbjct: 1507 D---VIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561
Query: 274 QVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309
Q+ GV +P+ GG+ L ++RL R+
Sbjct: 1562 QIRMKI--GVMFGNPETTTGGNALKFYASVRLDIRR 1595
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 28/216 (12%)
Query: 101 RRKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG 159
R V I+TGS +LD LG GG+ G I E +G SGKT L + Q R G
Sbjct: 1749 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----REG 1803
Query: 160 NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE 219
A+ID E P A + G+D +DN++ ++ T E + LA +
Sbjct: 1804 K-TCAFIDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGAV 1854
Query: 220 EPFRLLIVDSVIALF-RVDFTGRGELADRQQKLG-----QMLSRLTKISEEFNVAVYMTN 273
+ +++VDSV AL + + GE+ D L Q + +L ++ N + N
Sbjct: 1855 D---VIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1909
Query: 274 QVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309
Q+ GV +P+ GG+ L ++RL R+
Sbjct: 1910 QIRMKI--GVMFGNPETTTGGNALKFYASVRLDIRR 1943
>pdb|1U94|A Chain A, Crystal Structure Of E. Coli Reca In A Compressed Helical
Filament Form 2
pdb|1U98|A Chain A, "crystal Structure Of E. Coli Reca In A Compressed Helical
Filament Form3"
pdb|1U99|A Chain A, "crystal Structures Of E. Coli Reca In A Compressed
Helical Filament Form 4"
pdb|1XMS|A Chain A, "e. Coli Reca In Complex With Mnamp-Pnp"
pdb|1XMV|A Chain A, "e. Coli Reca In Complex With Mgadp"
Length = 356
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 28/216 (12%)
Query: 101 RRKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG 159
R V I+TGS +LD LG GG+ G I E +G SGKT L + Q R G
Sbjct: 37 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----REG 91
Query: 160 NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE 219
A+ID E P A + G+D +DN++ ++ T E + LA +
Sbjct: 92 K-TCAFIDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGAV 142
Query: 220 EPFRLLIVDSVIALF-RVDFTGRGELADRQQKLG-----QMLSRLTKISEEFNVAVYMTN 273
+ +++VDSV AL + + GE+ D L Q + +L ++ N + N
Sbjct: 143 D---VIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 197
Query: 274 QVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309
Q+ GV +P+ GG+ L ++RL R+
Sbjct: 198 QIRMKI--GVMFGNPETTTGGNALKFYASVRLDIRR 231
>pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
pdb|1G19|A Chain A, Structure Of Reca Protein
pdb|1MO3|A Chain A, Reca-Adp Complex
pdb|1MO4|A Chain A, Reca-Atp-Gamma-S Complex
pdb|1MO5|A Chain A, Reca-Atp-Gamma-S-Mg Complex
pdb|1MO6|A Chain A, Reca-datp-mg Complex
Length = 350
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 103/243 (42%), Gaps = 33/243 (13%)
Query: 78 EKICEAAEKIVNFGYITGSDALL---RRKAVIKITTGSQALDELLG-GGIETGAITEAFG 133
EK E A + Y GS L R+ + I TGS ALD LG GG+ G + E +G
Sbjct: 8 EKALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYG 67
Query: 134 EFRSGKTQLA-HTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVL 192
SGKT +A H + N + G A+ID E PD A++ G+D
Sbjct: 68 PESSGKTTVALHAVA-------NAQAAGGVAAFIDAEHALDPD----YAKKLGVD----T 112
Query: 193 DNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALF-RVDFTGRGELAD----- 246
D+++ ++ T E + L + ++++DSV AL R + GE+ D
Sbjct: 113 DSLLVSQPDTGEQALEIADML---IRSGALDIVVIDSVAALVPRAEL--EGEMGDSHVGL 167
Query: 247 RQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLM 306
+ + + Q L ++T NQ+ GV P+ GG L ++R+
Sbjct: 168 QARLMSQALRKMTGALNNSGTTAIFINQLRDKI--GVMFGSPETTTGGKALKFYASVRMD 225
Query: 307 FRK 309
R+
Sbjct: 226 VRR 228
>pdb|1UBC|A Chain A, Structure Of Reca Protein
pdb|1UBE|A Chain A, Msreca-Adp Complex
pdb|1UBF|A Chain A, Msreca-Atpgs Complex
pdb|1UBG|A Chain A, Msreca-Datp Complex
pdb|2G88|A Chain A, Msreca-datp Complex
pdb|2ODN|A Chain A, Msreca-Datp Complex
pdb|2ODW|A Chain A, Msreca-Atp-Gama-S Complex
pdb|2OE2|A Chain A, Msreca-Native-Low Humidity 95%
pdb|2OEP|A Chain A, Msreca-adp-complex
pdb|2OES|A Chain A, Msreca-Native-Ssb
pdb|2OFO|A Chain A, Msreca-native
pdb|2ZR7|A Chain A, Msreca Native Form Ii'
pdb|2ZRM|A Chain A, Msreca Datp Form Iv
pdb|2ZRN|A Chain A, Msreca Form Iv
pdb|2ZRO|A Chain A, Msreca Adp Form Iv
pdb|2ZRP|A Chain A, Msreca Datp Form Ii'
Length = 349
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 30/216 (13%)
Query: 102 RKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLA-HTLCVCTQLPTNMRGG 159
R+ + I TGS +LD LG GG+ G + E +G SGKT +A H + N +
Sbjct: 36 RQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVA-------NAQAA 88
Query: 160 NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE 219
G A+ID E P+ A++ G+D D+++ ++ T E + L +
Sbjct: 89 GGIAAFIDAEHALDPE----YAKKLGVD----TDSLLVSQPDTGEQALEIADML---VRS 137
Query: 220 EPFRLLIVDSVIALF-RVDFTGRGELAD-----RQQKLGQMLSRLTKISEEFNVAVYMTN 273
++++DSV AL R + GE+ D + + + Q L ++T N
Sbjct: 138 GALDIIVIDSVAALVPRAEI--EGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 195
Query: 274 QVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309
Q+ GV P+ GG L ++RL R+
Sbjct: 196 QLREKI--GVMFGSPETTTGGKALKFYASVRLDVRR 229
>pdb|2ZRC|A Chain A, Msreca Q196n Form Iv
pdb|2ZRD|A Chain A, Msreca Q196n Adp Form Iv
pdb|2ZRE|A Chain A, Msreca Q196n Atpgs Form Iv
pdb|2ZRF|A Chain A, Msreca Q196n Datp Form Iv
pdb|2ZRG|A Chain A, Msreca Q196n Datp Form Ii'
Length = 349
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 36/219 (16%)
Query: 102 RKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLA-HTLCVCTQLPTNMRGG 159
R+ + I TGS +LD LG GG+ G + E +G SGKT +A H + N +
Sbjct: 36 RQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVA-------NAQAA 88
Query: 160 NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE 219
G A+ID E P+ A++ G+D D+++ ++ T E + L +
Sbjct: 89 GGIAAFIDAEHALDPE----YAKKLGVD----TDSLLVSQPDTGEQALEIADML---VRS 137
Query: 220 EPFRLLIVDSVIALF-RVDFTGRGELAD-----RQQKLGQMLSRLT-KISEEFNVAVYMT 272
++++DSV AL R + GE+ D + + + Q L ++T ++ A+++
Sbjct: 138 GALDIIVIDSVAALVPRAEI--EGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 195
Query: 273 N--QVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309
N + I GV P+ GG L ++RL R+
Sbjct: 196 NLREKI-----GVMFGSPETTTGGKALKFYASVRLDVRR 229
>pdb|2ZR0|A Chain A, Msreca-Q196e Mutant
pdb|2ZR9|A Chain A, Msreca Q196e Datp Form Iv
pdb|2ZRA|A Chain A, Msreca Q196e Atpgs
pdb|2ZRB|A Chain A, Msreca Q196e Form Ii'
Length = 349
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 30/216 (13%)
Query: 102 RKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLA-HTLCVCTQLPTNMRGG 159
R+ + I TGS +LD LG GG+ G + E +G SGKT +A H + N +
Sbjct: 36 RQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVA-------NAQAA 88
Query: 160 NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE 219
G A+ID E P+ A++ G+D D+++ ++ T E + L +
Sbjct: 89 GGIAAFIDAEHALDPE----YAKKLGVD----TDSLLVSQPDTGEQALEIADML---VRS 137
Query: 220 EPFRLLIVDSVIALF-RVDFTGRGELAD-----RQQKLGQMLSRLTKISEEFNVAVYMTN 273
++++DSV AL R + GE+ D + + + Q L ++T N
Sbjct: 138 GALDIIVIDSVAALVPRAEI--EGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 195
Query: 274 QVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309
++ GV P+ GG L ++RL R+
Sbjct: 196 ELREKI--GVMFGSPETTTGGKALKFYASVRLDVRR 229
>pdb|3HR8|A Chain A, Crystal Structure Of Thermotoga Maritima Reca
Length = 356
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 111/250 (44%), Gaps = 34/250 (13%)
Query: 74 EAKVEKICEAAEKIVNFGYITGSDALLRRKAVIK----ITTGSQALDELLG-GGIETGAI 128
E + + + E A K + + GS +L + ++ I TGS A+D G GG G I
Sbjct: 4 EKQKKSVLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRI 63
Query: 129 TEAFGEFRSGKTQLA-HTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMD 187
E FG+ SGKT LA H + ++ G A+ID E P A+ G+D
Sbjct: 64 VEIFGQESSGKTTLALHAIAEAQKM-------GGVAAFIDAEHALDP----VYAKNLGVD 112
Query: 188 PGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALF-RVDFTGRGELAD 246
L +++ ++ E ++ L + L++VDSV AL R + G + D
Sbjct: 113 ----LKSLLISQPDHGEQALEIVDEL---VRSGVVDLIVVDSVAALVPRAEI--EGAMGD 163
Query: 247 RQQKL-GQMLSR-LTKISEEFN---VAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAV 301
Q L +++S+ L KI+ N V TNQ+ GV P+ GG L
Sbjct: 164 MQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKI--GVMFGSPETTTGGLALKFYA 221
Query: 302 TIRLMFRKGK 311
T+R+ R+G+
Sbjct: 222 TMRMEVRRGE 231
>pdb|2ZRH|A Chain A, Msreca Q196a Form Iv
pdb|2ZRI|A Chain A, Msreca Q196a Adp Form Iv
pdb|2ZRJ|A Chain A, Msreca Q196a Atpgs Form Iv
pdb|2ZRK|A Chain A, Msreca Q196a Datp Form Iv
pdb|2ZRL|A Chain A, Msreca Q196a Datp Form Ii'
Length = 349
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 30/216 (13%)
Query: 102 RKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLA-HTLCVCTQLPTNMRGG 159
R+ + I TGS +LD LG GG+ G + E +G SGKT +A H + N +
Sbjct: 36 RQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVA-------NAQAA 88
Query: 160 NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE 219
G A+ID E P+ A++ G+D D+++ ++ T E + L +
Sbjct: 89 GGIAAFIDAEHALDPE----YAKKLGVD----TDSLLVSQPDTGEQALEIADML---VRS 137
Query: 220 EPFRLLIVDSVIALF-RVDFTGRGELAD-----RQQKLGQMLSRLTKISEEFNVAVYMTN 273
++++DSV AL R + GE+ D + + + Q L ++T N
Sbjct: 138 GALDIIVIDSVAALVPRAEI--EGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 195
Query: 274 QVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309
+ GV P+ GG L ++RL R+
Sbjct: 196 ALREKI--GVMFGSPETTTGGKALKFYASVRLDVRR 229
>pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With Atp-Gamma-S"
Length = 366
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 84/218 (38%), Gaps = 46/218 (21%)
Query: 108 ITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYI 166
++TGS +LD LG GGI G ITE +G GKT LA + Q G A+I
Sbjct: 55 VSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ------KAGGTCAFI 108
Query: 167 DTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLA--AKMSEEPFRL 224
D E +DP +YARA LL+ + + E L
Sbjct: 109 DAE--------------HALDP-------VYARALGVNTD-ELLVSQPDNGEQALEIMEL 146
Query: 225 LIVDSVI----ALFRVDFTGR----GELAD-----RQQKLGQMLSRLTKISEEFNVAVYM 271
L+ I T R G++ D + + + Q L +LT I + A
Sbjct: 147 LVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIF 206
Query: 272 TNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309
NQV GV +P+ GG L ++RL RK
Sbjct: 207 INQVREKI--GVMYGNPETTTGGRALKFYASVRLDVRK 242
>pdb|2W0M|A Chain A, Crystal Structure Of Sso2452 From Sulfolobus Solfataricus
P2
Length = 235
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 31/183 (16%)
Query: 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVA 164
V +++TG D+L+ GGI G GE +GKT + + +R G+ +
Sbjct: 2 VSRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHF-----IAKGLRDGDPCI- 55
Query: 165 YIDTEGTFRPDRIVPIAERFGMDPGAVLDN---IIYARAYTYEHQYNLL----LGLAAKM 217
Y+ TE + D I+ A++F D ++ II A E Q++L+ L K+
Sbjct: 56 YVTTEES--RDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKV 113
Query: 218 SEEPFRL------LIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYM 271
E +L L++DSV ALF D+ ++ L ++ ++N +Y
Sbjct: 114 IEAKQKLGYGKARLVIDSVSALF----------LDKPAMARKISYYLKRVLNKWNFTIYA 163
Query: 272 TNQ 274
T+Q
Sbjct: 164 TSQ 166
>pdb|3K09|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 69 IKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAI 128
++G S K E + +N + G+ L +R + +++++G LDE+ GGG +I
Sbjct: 225 LRGTSHMKGEYPFTITDHGINI-FPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSI 283
Query: 129 TEAFGEFRSGKTQL 142
A G +GKT L
Sbjct: 284 ILATGATGTGKTLL 297
>pdb|4DUG|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 69 IKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAI 128
++G S K E + +N + G+ L +R + +++++G LDE+ GGG +I
Sbjct: 225 LRGTSHMKGEYPFTITDHGINI-FPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSI 283
Query: 129 TEAFGEFRSGKTQL 142
A G +GKT L
Sbjct: 284 ILATGATGTGKTLL 297
>pdb|1TF7|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic
Length = 525
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 69 IKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAI 128
++G S K E + +N + G+ L +R + +++++G LDE+ GGG +I
Sbjct: 225 LRGTSHMKGEYPFTITDHGINI-FPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSI 283
Query: 129 TEAFGEFRSGKTQL 142
A G +GKT L
Sbjct: 284 ILATGATGTGKTLL 297
>pdb|3K0C|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 69 IKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAI 128
++G S K E + +N + G+ L +R + +++++G LDE+ GGG +I
Sbjct: 225 LRGTSHMKGEYPFTITDHGINI-FPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSI 283
Query: 129 TEAFGEFRSGKTQL 142
A G +GKT L
Sbjct: 284 ILATGATGTGKTLL 297
>pdb|1U9I|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|3DVL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
Length = 519
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 69 IKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAI 128
++G S K E + +N + G+ L +R + +++++G LDE+ GGG +I
Sbjct: 225 LRGTSHMKGEYPFTITDHGINI-FPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSI 283
Query: 129 TEAFGEFRSGKTQL 142
A G +GKT L
Sbjct: 284 ILATGATGTGKTLL 297
>pdb|3K0E|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
Length = 519
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 69 IKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAI 128
++G S K E + +N + G+ L +R + +++++G LDE+ GGG +I
Sbjct: 225 LRGTSHMKGEYPFTITDHGINI-FPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSI 283
Query: 129 TEAFGEFRSGKTQL 142
A G +GKT L
Sbjct: 284 ILATGATGTGKTLL 297
>pdb|3K09|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 69 IKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAI 128
++G S K E + +N + G+ L +R + +++++G LDE+ GGG +I
Sbjct: 225 LRGTSHMKGEYPFTITDHGINI-FPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSI 283
Query: 129 TEAFGEFRSGKTQL 142
A G +GKT L
Sbjct: 284 ILATGATGTGKTLL 297
>pdb|4DUG|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 69 IKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAI 128
++G S K E + +N + G+ L +R + +++++G LDE+ GGG +I
Sbjct: 225 LRGTSHMKGEYPFTITDHGINI-FPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSI 283
Query: 129 TEAFGEFRSGKTQL 142
A G +GKT L
Sbjct: 284 ILATGATGTGKTLL 297
>pdb|3S1A|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 69 IKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAI 128
++G S K E + +N + G+ L +R + +++++G LDE+ GGG +I
Sbjct: 225 LRGTSHMKGEYPFTITDHGINI-FPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSI 283
Query: 129 TEAFGEFRSGKTQL 142
A G +GKT L
Sbjct: 284 ILATGATGTGKTLL 297
>pdb|3S1A|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 69 IKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAI 128
++G S K E + +N + G+ L +R + +++++G LDE+ GGG +I
Sbjct: 225 LRGTSHMKGEYPFTITDHGINI-FPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSI 283
Query: 129 TEAFGEFRSGKTQL 142
A G +GKT L
Sbjct: 284 ILATGATGTGKTLL 297
>pdb|1U9I|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
Length = 519
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 69 IKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAI 128
++G S K E + +N + G+ L +R + +++++G LDE+ GGG +I
Sbjct: 225 LRGTSHMKGEYPFTITDHGINI-FPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSI 283
Query: 129 TEAFGEFRSGKTQL 142
A G +GKT L
Sbjct: 284 ILATGATGTGKTLL 297
>pdb|3K0A|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 69 IKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAI 128
++G S K E + +N + G+ L +R + +++++G LDE+ GGG +I
Sbjct: 225 LRGTSHMKGEYPFTITDHGINI-FPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSI 283
Query: 129 TEAFGEFRSGKTQL 142
A G +GKT L
Sbjct: 284 ILATGATGTGKTLL 297
>pdb|3JZM|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 69 IKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAI 128
++G S K E + +N + G+ L +R + +++++G LDE+ GGG +I
Sbjct: 225 LRGTSHMKGEYPFTITDHGINI-FPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSI 283
Query: 129 TEAFGEFRSGKTQL 142
A G +GKT L
Sbjct: 284 ILATGATGTGKTLL 297
>pdb|3K0F|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 69 IKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAI 128
++G S K E + +N + G+ L +R + +++++G LDE+ GGG +I
Sbjct: 225 LRGTSHMKGEYPFTITDHGINI-FPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSI 283
Query: 129 TEAFGEFRSGKTQL 142
A G +GKT L
Sbjct: 284 ILATGATGTGKTLL 297
>pdb|4IJM|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
Length = 512
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 69 IKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAI 128
++G S K E + +N + G+ L +R + +++++G LDE+ GGG +I
Sbjct: 212 LRGTSHMKGEYPFTITDHGINI-FPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSI 270
Query: 129 TEAFGEFRSGKTQL 142
A G +GKT L
Sbjct: 271 ILATGATGTGKTLL 284
>pdb|3K0F|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 69 IKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAI 128
++G S K E + +N + G+ L +R + +++++G LDE+ GGG +I
Sbjct: 225 LRGTSHMKGEYPFTITDHGINI-FPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSI 283
Query: 129 TEAFGEFRSGKTQL 142
A G +GKT L
Sbjct: 284 ILATGATGTGKTLL 297
>pdb|3K0C|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 69 IKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAI 128
++G S K E + +N + G+ L +R + +++++G LDE+ GGG +I
Sbjct: 225 LRGTSHMKGEYPFTITDHGINI-FPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSI 283
Query: 129 TEAFGEFRSGKTQL 142
A G +GKT L
Sbjct: 284 ILATGATGTGKTLL 297
>pdb|3K0A|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 69 IKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAI 128
++G S K E + +N + G+ L +R + +++++G LDE+ GGG +I
Sbjct: 225 LRGTSHMKGEYPFTITDHGINI-FPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSI 283
Query: 129 TEAFGEFRSGKTQL 142
A G +GKT L
Sbjct: 284 ILATGATGTGKTLL 297
>pdb|2VPN|A Chain A, High-Resolution Structure Of The Periplasmic Ectoine-
Binding Protein From Teaabc Trap-Transporter Of
Halomonas Elongata
pdb|2VPN|B Chain B, High-Resolution Structure Of The Periplasmic Ectoine-
Binding Protein From Teaabc Trap-Transporter Of
Halomonas Elongata
pdb|2VPO|A Chain A, High Resolution Structure Of The Periplasmic Binding
Protein Teaa From Teaabc Trap Transporter Of Halomonas
Elongata In Complex With Hydroxyectoine
pdb|2VPO|B Chain B, High Resolution Structure Of The Periplasmic Binding
Protein Teaa From Teaabc Trap Transporter Of Halomonas
Elongata In Complex With Hydroxyectoine
Length = 316
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 37 QGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIV 88
+G++ D + +QDA + HT +H IKGLSE +EKI A++++
Sbjct: 221 EGLSEEDQQLVQDA----ADAAYDHTIEH---IKGLSEESLEKIKAASDEVT 265
>pdb|3GYY|A Chain A, The Ectoine Binding Protein Of The Teaabc Trap Transporter
Teaa In The Apo-State
pdb|3GYY|B Chain B, The Ectoine Binding Protein Of The Teaabc Trap Transporter
Teaa In The Apo-State
pdb|3GYY|C Chain C, The Ectoine Binding Protein Of The Teaabc Trap Transporter
Teaa In The Apo-State
pdb|3GYY|D Chain D, The Ectoine Binding Protein Of The Teaabc Trap Transporter
Teaa In The Apo-State
Length = 341
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 37 QGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIV 88
+G++ D + +QDA + HT +H IKGLSE +EKI A++++
Sbjct: 246 EGLSEEDQQLVQDA----ADAAYDHTIEH---IKGLSEESLEKIKAASDEVT 290
>pdb|1L7Y|A Chain A, Solution Nmr Structure Of C. Elegans Protein Zk652.3.
Northeast Structural Genomics Consortium Target Wr41
Length = 94
Score = 29.3 bits (64), Expect = 3.6, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 262 SEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKG 312
+EEF V T+ +I + G GV +P +PAG L H +RL+ R G
Sbjct: 47 AEEFKVPA-ATSAIITNDGVGV---NPAQPAGNIFLKHGSELRLIPRDRVG 93
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 6 KAEEQSQLQLVEREDIDDEEDLFEAIDKLISQ 37
KAE + QLQ+ +DD+ LF + +L SQ
Sbjct: 273 KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQ 304
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 6 KAEEQSQLQLVEREDIDDEEDLFEAIDKLISQ 37
KAE + QLQ+ +DD+ LF + +L SQ
Sbjct: 273 KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQ 304
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 6 KAEEQSQLQLVEREDIDDEEDLFEAIDKLISQ 37
KAE + QLQ+ +DD+ LF + +L SQ
Sbjct: 273 KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQ 304
>pdb|2UZ1|B Chain B, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
pdb|2UZ1|C Chain C, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
Length = 563
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 146 LCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG 189
L + + LP MRGG + Y + PD ++ + RFG++ G
Sbjct: 242 LSMLSGLPDAMRGGLVQNLYSFAKADAAPDLVLMLGARFGLNTG 285
>pdb|2AG0|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|B Chain B, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|C Chain C, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|D Chain D, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2UZ1|A Chain A, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
pdb|2UZ1|D Chain D, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
Length = 563
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 146 LCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG 189
L + + LP MRGG + Y + PD ++ + RFG++ G
Sbjct: 242 LSMLSGLPDAMRGGLVQNLYSFAKADAAPDLVLMLGARFGLNTG 285
>pdb|3D7K|A Chain A, Crystal Structure Of Benzaldehyde Lyase In Complex With
The Inhibitor Mbp
pdb|3D7K|B Chain B, Crystal Structure Of Benzaldehyde Lyase In Complex With
The Inhibitor Mbp
Length = 570
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 146 LCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG 189
L + + LP MRGG + Y + PD ++ + RFG++ G
Sbjct: 242 LSMLSGLPDAMRGGLVQNLYSFAKADAAPDLVLMLGARFGLNTG 285
>pdb|3IAF|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|B Chain B, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|C Chain C, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|D Chain D, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
Length = 570
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 146 LCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG 189
L + + LP MRGG + Y + PD ++ + RFG++ G
Sbjct: 242 LSMLSGLPDAMRGGLVQNLYSFAKADAAPDLVLMLGARFGLNTG 285
>pdb|3IAE|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With
Benzoylphosphonate
pdb|3IAE|B Chain B, Structure Of Benzaldehyde Lyase A28s Mutant With
Benzoylphosphonate
Length = 570
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 146 LCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG 189
L + + LP MRGG + Y + PD ++ + RFG++ G
Sbjct: 242 LSMLSGLPDAMRGGLVQNLYSFAKADAAPDLVLMLGARFGLNTG 285
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,452,551
Number of Sequences: 62578
Number of extensions: 448214
Number of successful extensions: 1426
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1269
Number of HSP's gapped (non-prelim): 92
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)