BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047388
(352 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96449|DMC1_SOYBN Meiotic recombination protein DMC1 homolog OS=Glycine max PE=2 SV=1
Length = 345
Score = 628 bits (1620), Expect = e-179, Method: Compositional matrix adjust.
Identities = 316/353 (89%), Positives = 336/353 (95%), Gaps = 9/353 (2%)
Query: 1 MIATLKAEEQS-QLQLVEREDIDDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLM 59
M+ATLK+EE S QLQLVEREDIDD+EDLFEAIDKLI+QGINAGDVKKLQDAGIYTCNGLM
Sbjct: 1 MLATLKSEESSGQLQLVEREDIDDDEDLFEAIDKLIAQGINAGDVKKLQDAGIYTCNGLM 60
Query: 60 MHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELL 119
MHTKK+LTGIKGLSEAKV+KICEAAEK+VNFGYITGSDALL+RK+VI+ITTGSQALDELL
Sbjct: 61 MHTKKNLTGIKGLSEAKVDKICEAAEKLVNFGYITGSDALLKRKSVIRITTGSQALDELL 120
Query: 120 GGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVP 179
GGG+ET AITEAFGEFRSGKTQLAHTLCV TQLPTNMRGGNGKVAYIDTEGTFRPDRIVP
Sbjct: 121 GGGVETSAITEAFGEFRSGKTQLAHTLCVSTQLPTNMRGGNGKVAYIDTEGTFRPDRIVP 180
Query: 180 IAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFT 239
IAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDF+
Sbjct: 181 IAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFS 240
Query: 240 GRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAH 299
GRGELADRQQKL QMLSRL KI+EEFNVAVYMTNQVI+DPGGGVF++DPKKPAGGHVLAH
Sbjct: 241 GRGELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVISDPGGGVFVTDPKKPAGGHVLAH 300
Query: 300 AVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
A T+RLMFRKGKGEQR+CKVFDAPNLPEAEA+ +IT GGIADAKD
Sbjct: 301 AATVRLMFRKGKGEQRICKVFDAPNLPEAEAV--------FQITAGGIADAKD 345
>sp|Q39009|DMC1_ARATH Meiotic recombination protein DMC1 homolog OS=Arabidopsis thaliana
GN=LIM15 PE=1 SV=2
Length = 344
Score = 604 bits (1557), Expect = e-172, Method: Compositional matrix adjust.
Identities = 306/352 (86%), Positives = 332/352 (94%), Gaps = 8/352 (2%)
Query: 1 MIATLKAEEQSQLQLVEREDIDDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMM 60
M+A+LKAEE SQ+QLVERE+ D++EDLFE IDKLI+QGINAGDVKKLQ+AGI+TCNGLMM
Sbjct: 1 MMASLKAEETSQMQLVEREENDEDEDLFEMIDKLIAQGINAGDVKKLQEAGIHTCNGLMM 60
Query: 61 HTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLG 120
HTKK+LTGIKGLSEAKV+KICEAAEKIVNFGY+TGSDAL++RK+V+KITTG QALD+LLG
Sbjct: 61 HTKKNLTGIKGLSEAKVDKICEAAEKIVNFGYMTGSDALIKRKSVVKITTGCQALDDLLG 120
Query: 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPI 180
GGIET AITEAFGEFRSGKTQLAHTLCV TQLPTNM+GGNGKVAYIDTEGTFRPDRIVPI
Sbjct: 121 GGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPI 180
Query: 181 AERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTG 240
AERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFR+LIVDS+IALFRVDFTG
Sbjct: 181 AERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDFTG 240
Query: 241 RGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300
RGELADRQQKL QMLSRL KI+EEFNVAVYMTNQVIADPGGG+FISDPKKPAGGHVLAHA
Sbjct: 241 RGELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHA 300
Query: 301 VTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
TIRL+FRKGKG+ RVCKV+DAPNL EAEA SF +IT GGIADAKD
Sbjct: 301 ATIRLLFRKGKGDTRVCKVYDAPNLAEAEA-SF-------QITQGGIADAKD 344
>sp|P37384|DMC1_LILLO Meiotic recombination protein DMC1 homolog OS=Lilium longiflorum
GN=LIM15 PE=2 SV=1
Length = 349
Score = 596 bits (1536), Expect = e-169, Method: Compositional matrix adjust.
Identities = 293/346 (84%), Positives = 318/346 (91%), Gaps = 9/346 (2%)
Query: 8 EEQSQLQLVEREDIDDEE-DLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHL 66
E QLQL++R++ ++EE D FE+IDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKK+L
Sbjct: 12 ESPGQLQLLDRQEAEEEEEDCFESIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNL 71
Query: 67 TGIKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETG 126
TGIKGLSEAKV+KICEAAEK+VN GYITGSD LL+RK+VI+ITTGSQALDELLGGGIET
Sbjct: 72 TGIKGLSEAKVDKICEAAEKLVNVGYITGSDVLLKRKSVIRITTGSQALDELLGGGIETL 131
Query: 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGM 186
ITEAFGEFRSGKTQ+AHTLCV TQLP +M GGNGKVAYIDTEGTFRPDRIVPIAERFGM
Sbjct: 132 QITEAFGEFRSGKTQIAHTLCVSTQLPVSMHGGNGKVAYIDTEGTFRPDRIVPIAERFGM 191
Query: 187 DPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELAD 246
D AVLDNIIYARAYTYEHQYNLLL LAAKMSEEPFRLLIVDSVIALFRVDF+GRGELA+
Sbjct: 192 DASAVLDNIIYARAYTYEHQYNLLLALAAKMSEEPFRLLIVDSVIALFRVDFSGRGELAE 251
Query: 247 RQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLM 306
RQQKL QMLSRLTKI+EEFNVAVYMTNQVIADPGGG+FISDPKKPAGGHVLAHA T+RLM
Sbjct: 252 RQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHAATVRLM 311
Query: 307 FRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
RKGKGEQRVCK+FDAPNLPE+EA+ +ITPGG+ADAKD
Sbjct: 312 LRKGKGEQRVCKIFDAPNLPESEAV--------FQITPGGVADAKD 349
>sp|Q61880|DMC1_MOUSE Meiotic recombination protein DMC1/LIM15 homolog OS=Mus musculus
GN=Dmc1 PE=1 SV=1
Length = 340
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/344 (59%), Positives = 250/344 (72%), Gaps = 13/344 (3%)
Query: 14 QLVERED--IDDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKG 71
Q+V+ E DDEE LF+ ID L GIN D+KKL+ GI T G+ M T++ L +KG
Sbjct: 5 QVVQEESGFQDDEESLFQDIDLLQKHGINMADIKKLKSVGICTIKGIQMTTRRALCNVKG 64
Query: 72 LSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEA 131
LSEAKVEKI EAA K++ G++T RRK V ITTGSQ D+LLGGGIE+ AITEA
Sbjct: 65 LSEAKVEKIKEAANKLIEPGFLTAFQYSERRKMVFHITTGSQEFDKLLGGGIESMAITEA 124
Query: 132 FGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAV 191
FGEFR+GKTQL+HTLCV QLP GK+ +IDTE TFRPDR+ IA+RF +D AV
Sbjct: 125 FGEFRTGKTQLSHTLCVTAQLPGTGGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHEAV 184
Query: 192 LDNIIYARAYTYEHQYNLLLGLAAKMSEEP--FRLLIVDSVIALFRVDFTGRGELADRQQ 249
LDN++YARAYT EHQ LL +AAK EE F+LLI+DS++ALFRVDF+GRGELA+RQQ
Sbjct: 185 LDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQ 244
Query: 250 KLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGV-FISDPKKPAGGHVLAHAVTIRLMFR 308
KL QMLSRL KISEE+NVAV++TNQ+ ADPG + F +DPKKP GGH+LAHA T R+ R
Sbjct: 245 KLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLR 304
Query: 309 KGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
KG+GE R+ K++D+P +PE EA IT GGI DAK+
Sbjct: 305 KGRGELRIAKIYDSPEMPENEAT--------FAITAGGIGDAKE 340
>sp|Q14565|DMC1_HUMAN Meiotic recombination protein DMC1/LIM15 homolog OS=Homo sapiens
GN=DMC1 PE=1 SV=2
Length = 340
Score = 389 bits (1000), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/334 (59%), Positives = 246/334 (73%), Gaps = 11/334 (3%)
Query: 22 DDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKIC 81
D+EE LF+ ID L GIN D+KKL+ GI T G+ M T++ L +KGLSEAKV+KI
Sbjct: 15 DEEESLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIK 74
Query: 82 EAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQ 141
EAA K++ G++T + +RK V ITTGSQ D+LLGGGIE+ AITEAFGEFR+GKTQ
Sbjct: 75 EAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQ 134
Query: 142 LAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201
L+HTLCV QLP GK+ +IDTE TFRPDR+ IA+RF +D AVLDN++YARAY
Sbjct: 135 LSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 194
Query: 202 TYEHQYNLLLGLAAKMSEEP--FRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLT 259
T EHQ LL +AAK EE F+LLI+DS++ALFRVDF+GRGELA+RQQKL QMLSRL
Sbjct: 195 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQ 254
Query: 260 KISEEFNVAVYMTNQVIADPGGGV-FISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCK 318
KISEE+NVAV++TNQ+ ADPG + F +DPKKP GGH+LAHA T R+ RKG+GE R+ K
Sbjct: 255 KISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAK 314
Query: 319 VFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
++D+P +PE EA IT GGI DAK+
Sbjct: 315 IYDSPEMPENEAT--------FAITAGGIGDAKE 340
>sp|P50265|DLH1_CANAX Meiotic recombination protein DLH1 OS=Candida albicans GN=DLH1 PE=3
SV=1
Length = 324
Score = 363 bits (931), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 181/327 (55%), Positives = 232/327 (70%), Gaps = 10/327 (3%)
Query: 25 EDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAA 84
ED +ID L QGINAGD+ KL+ AGI + ++ T+++LT IKGLSE KVEKI EAA
Sbjct: 4 EDSIISIDSLQDQGINAGDINKLKSAGICSITSVLSTTRRNLTKIKGLSEIKVEKIKEAA 63
Query: 85 EKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAH 144
KI +G++ + R V ITTGS+ DE+LGGGI++ +ITE FGEFR GKTQL H
Sbjct: 64 GKIKKYGFLPATIVAESRTKVFHITTGSKQFDEILGGGIQSMSITEVFGEFRCGKTQLCH 123
Query: 145 TLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYE 204
TLCV QLPT+M GG G+VAYIDTEGTFRPDRI IAER+G+D L+NI YARA E
Sbjct: 124 TLCVAAQLPTDMGGGEGRVAYIDTEGTFRPDRIRSIAERYGVDADICLENISYARALNSE 183
Query: 205 HQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEE 264
HQ L+ L +++E FRLLIVDS++A FRVD++GRGEL +RQQKL Q LS LT+++E+
Sbjct: 184 HQIELVEQLGNELAEGTFRLLIVDSIMACFRVDYSGRGELNERQQKLNQHLSNLTRVAED 243
Query: 265 FNVAVYMTNQVIADPGGGVFI--SDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDA 322
+N+AV++TNQV +DPG +D +KP GGHVLAHA R++ RKG+GE+RV K+ D+
Sbjct: 244 YNIAVFLTNQVQSDPGASALFAAADGRKPVGGHVLAHASATRILLRKGRGEERVAKLQDS 303
Query: 323 PNLPEAEAISFSYHIILIKITPGGIAD 349
PN+PE E + I GGI D
Sbjct: 304 PNMPEKECVYV--------IGEGGIKD 322
>sp|O42634|DMC1_SCHPO Meiotic recombination protein dmc1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dmc1 PE=1 SV=2
Length = 332
Score = 358 bits (920), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 183/330 (55%), Positives = 236/330 (71%), Gaps = 10/330 (3%)
Query: 22 DDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKIC 81
DDE+ +F I+ L + GI D+ KL+ AG+ T G+ M TK+ L IKG SEAKV+K+
Sbjct: 9 DDEQMIFSDIEDLTAHGIGMTDIIKLKQAGVCTVQGVHMSTKRFLLKIKGFSEAKVDKLK 68
Query: 82 EAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQ 141
EAA K+ + T + RK V I+TGS+AL+ +LGGGI++ +ITE FGEFR GKTQ
Sbjct: 69 EAASKMCPANFSTAMEISQNRKKVWSISTGSEALNGILGGGIQSMSITEVFGEFRCGKTQ 128
Query: 142 LAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201
++HTLCV QLP +M G GKVA+IDTEGTFRPDRI IAERFG+D ++NII +RAY
Sbjct: 129 MSHTLCVTAQLPRDMGGAEGKVAFIDTEGTFRPDRIKAIAERFGVDADQAMENIIVSRAY 188
Query: 202 TYEHQYNLLLGLAAKMSEE-PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTK 260
E Q + L +E+ +RLLIVDS++ALFRVD++GRGEL++RQQKL ML+RL
Sbjct: 189 NSEQQMEYITKLGTIFAEDGQYRLLIVDSIMALFRVDYSGRGELSERQQKLNIMLARLNH 248
Query: 261 ISEEFNVAVYMTNQVIADPGGG-VFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKV 319
ISEEFNVAV++TNQV ADPG +F S+ +KP GGHV+AHA RL+ RKG+GE+RV K+
Sbjct: 249 ISEEFNVAVFVTNQVQADPGAAMMFASNDRKPVGGHVMAHASATRLLLRKGRGEERVAKL 308
Query: 320 FDAPNLPEAEAISFSYHIILIKITPGGIAD 349
D+P++PEAE SY ITPGGIAD
Sbjct: 309 NDSPDMPEAEC---SY-----VITPGGIAD 330
>sp|P25453|DMC1_YEAST Meiotic recombination protein DMC1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DMC1 PE=1 SV=1
Length = 334
Score = 348 bits (892), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 172/325 (52%), Positives = 230/325 (70%), Gaps = 10/325 (3%)
Query: 30 AIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVN 89
++D+L + GINA D++KL+ GIYT N ++ T++HL IKGLSE KVEKI EAA KI+
Sbjct: 18 SVDELQNYGINASDLQKLKSGGIYTVNTVLSTTRRHLCKIKGLSEVKVEKIKEAAGKIIQ 77
Query: 90 FGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVC 149
G+I + L R+ V ++TGS+ LD +LGGGI T +ITE FGEFR GKTQ++HTLCV
Sbjct: 78 VGFIPATVQLDIRQRVYSLSTGSKQLDSILGGGIMTMSITEVFGEFRCGKTQMSHTLCVT 137
Query: 150 TQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNL 209
TQLP M GG GKVAYIDTEGTFRP+RI IAE + +DP + L N+ YARA EHQ L
Sbjct: 138 TQLPREMGGGEGKVAYIDTEGTFRPERIKQIAEGYELDPESCLANVSYARALNSEHQMEL 197
Query: 210 LLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAV 269
+ L ++S +RL++VDS++A FRVD+ GRGEL++RQQKL Q L +L +++EEFNVAV
Sbjct: 198 VEQLGEELSSGDYRLIVVDSIMANFRVDYCGRGELSERQQKLNQHLFKLNRLAEEFNVAV 257
Query: 270 YMTNQVIADPGGGVFI--SDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPE 327
++TNQV +DPG +D +KP GGHVLAHA R++ RKG+G++RV K+ D+P++PE
Sbjct: 258 FLTNQVQSDPGASALFASADGRKPIGGHVLAHASATRILLRKGRGDERVAKLQDSPDMPE 317
Query: 328 AEAISFSYHIILIKITPGGIADAKD 352
E + I GI D+ D
Sbjct: 318 KECVYV--------IGEKGITDSSD 334
>sp|Q06609|RAD51_HUMAN DNA repair protein RAD51 homolog 1 OS=Homo sapiens GN=RAD51 PE=1
SV=1
Length = 339
Score = 346 bits (888), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 176/344 (51%), Positives = 232/344 (67%), Gaps = 11/344 (3%)
Query: 12 QLQLVEREDIDDEEDLF--EAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGI 69
Q+QL D EE+ F + I +L GINA DVKKL++AG +T + KK L I
Sbjct: 4 QMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINI 63
Query: 70 KGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAIT 129
KG+SEAK +KI A K+V G+ T ++ RR +I+ITTGS+ LD+LL GGIETG+IT
Sbjct: 64 KGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSIT 123
Query: 130 EAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG 189
E FGEFR+GKTQ+ HTL V QLP + GG GK YIDTEGTFRP+R++ +AER+G+
Sbjct: 124 EMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS 183
Query: 190 AVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQ 249
VLDN+ YARA+ +HQ LL +A M E + LLIVDS AL+R D++GRGEL+ RQ
Sbjct: 184 DVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQM 243
Query: 250 KLGQMLSRLTKISEEFNVAVYMTNQVIAD-PGGGVFISDPKKPAGGHVLAHAVTIRLMFR 308
L + L L ++++EF VAV +TNQV+A G +F +DPKKP GG+++AHA T RL R
Sbjct: 244 HLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLR 303
Query: 309 KGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
KG+GE R+CK++D+P LPEAEA + I G+ DAKD
Sbjct: 304 KGRGETRICKIYDSPCLPEAEA--------MFAINADGVGDAKD 339
>sp|Q91918|RA51A_XENLA DNA repair protein RAD51 homolog A OS=Xenopus laevis GN=rad51-a
PE=2 SV=1
Length = 336
Score = 345 bits (884), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 173/332 (52%), Positives = 229/332 (68%), Gaps = 11/332 (3%)
Query: 24 EEDLF--EAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKIC 81
EE+ F +AI +L GINA DVKKL++AG +T + KK L IKG+SEAK EKI
Sbjct: 13 EEEHFGPQAISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELLNIKGISEAKAEKIL 72
Query: 82 EAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQ 141
A K+V G+ T ++ RR +I+I+TGS+ LD+LL GG+ETG+ITE FGEFR+GKTQ
Sbjct: 73 AEAAKLVPMGFTTATEFHQRRSEIIQISTGSKELDKLLQGGVETGSITEMFGEFRTGKTQ 132
Query: 142 LAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201
L HTL V QLP + GG GK YIDTEGTFRP+R++ +AER+G+ VLDN+ YARA+
Sbjct: 133 LCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 192
Query: 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKI 261
+HQ LL +A M+E + LLIVDS AL+R D++GRGEL+ RQ L + L L ++
Sbjct: 193 NTDHQTQLLYQASAMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRL 252
Query: 262 SEEFNVAVYMTNQVIAD-PGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVF 320
++EF VAV +TNQV+A G +F +DPKKP GG+++AHA T RL RKG+GE R+CK++
Sbjct: 253 ADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIY 312
Query: 321 DAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
D+P LPEAEA + I G+ DAKD
Sbjct: 313 DSPCLPEAEA--------MFAINADGVGDAKD 336
>sp|Q8MKI8|RAD51_CANFA DNA repair protein RAD51 homolog 1 OS=Canis familiaris GN=RAD51
PE=2 SV=1
Length = 339
Score = 345 bits (884), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 175/344 (50%), Positives = 231/344 (67%), Gaps = 11/344 (3%)
Query: 12 QLQLVEREDIDDEEDLF--EAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGI 69
Q+QL D EE+ F + I +L GINA DVKKL++AG +T + KK L I
Sbjct: 4 QMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELISI 63
Query: 70 KGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAIT 129
KG+SEAK +KI A K+V G+ T ++ RR +I+ITTGS+ LD+LL GGIETG+IT
Sbjct: 64 KGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSIT 123
Query: 130 EAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG 189
E FGEFR+GKTQ+ HTL V QLP + GG GK YIDTEGTFRP+R++ +AER+G+
Sbjct: 124 EMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS 183
Query: 190 AVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQ 249
VLDN+ YAR + +HQ LL +A M E + LLIVDS AL+R D++GRGEL+ RQ
Sbjct: 184 DVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQM 243
Query: 250 KLGQMLSRLTKISEEFNVAVYMTNQVIAD-PGGGVFISDPKKPAGGHVLAHAVTIRLMFR 308
L + L L ++++EF VAV +TNQV+A G +F +DPKKP GG+++AHA T RL R
Sbjct: 244 HLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLR 303
Query: 309 KGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
KG+GE R+CK++D+P LPEAEA + I G+ DAKD
Sbjct: 304 KGRGETRICKIYDSPCLPEAEA--------MFAINADGVGDAKD 339
>sp|Q91917|RA51B_XENLA DNA repair protein RAD51 homolog B OS=Xenopus laevis GN=rad51-b
PE=2 SV=1
Length = 336
Score = 344 bits (883), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 175/332 (52%), Positives = 228/332 (68%), Gaps = 11/332 (3%)
Query: 24 EEDLF--EAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKIC 81
EE+ F +AI +L GINA DVKKL+DAG +T + KK L IKG+SEAK EKI
Sbjct: 13 EEENFGPQAITRLEQCGINANDVKKLEDAGFHTVEAVAYAPKKELLNIKGISEAKAEKIL 72
Query: 82 EAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQ 141
A K+V G+ T ++ RR +I+I TGS+ LD+LL GGIETG+ITE FGEFR+GKTQ
Sbjct: 73 AEAAKLVPMGFTTATEFHQRRSEIIQIGTGSKELDKLLQGGIETGSITEMFGEFRTGKTQ 132
Query: 142 LAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201
L HTL V QLP + GG GK YIDTEGTFRP+R++ +AER+G+ VLDN+ YARA+
Sbjct: 133 LCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 192
Query: 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKI 261
+HQ LL +A M+E + LLIVDS AL+R D++GRGEL+ RQ L + L L ++
Sbjct: 193 NTDHQTQLLYQASAMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRL 252
Query: 262 SEEFNVAVYMTNQVIAD-PGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVF 320
++EF VAV +TNQV+A G +F +DPKKP GG+++AHA T RL RKG+GE R+CK++
Sbjct: 253 ADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIY 312
Query: 321 DAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
D+P LPEAEA + I G+ DAKD
Sbjct: 313 DSPCLPEAEA--------MFAINADGVGDAKD 336
>sp|Q2KJ94|RAD51_BOVIN DNA repair protein RAD51 homolog 1 OS=Bos taurus GN=RAD51 PE=2 SV=1
Length = 339
Score = 344 bits (883), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 175/344 (50%), Positives = 231/344 (67%), Gaps = 11/344 (3%)
Query: 12 QLQLVEREDIDDEEDLF--EAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGI 69
Q+QL D EE+ F + I +L GINA DVKKL++AG +T + KK L I
Sbjct: 4 QMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINI 63
Query: 70 KGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAIT 129
KG+SEAK +KI A K+V G+ T ++ RR +I+ITTGS+ LD+LL GGIETG+IT
Sbjct: 64 KGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSIT 123
Query: 130 EAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG 189
E FGEFR+GKTQ+ HTL V QLP + GG GK YIDTEGTFRP+R++ +AER+G+
Sbjct: 124 EMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS 183
Query: 190 AVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQ 249
VLDN+ YAR + +HQ LL +A M E + LLIVDS AL+R D++GRGEL+ RQ
Sbjct: 184 DVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQM 243
Query: 250 KLGQMLSRLTKISEEFNVAVYMTNQVIAD-PGGGVFISDPKKPAGGHVLAHAVTIRLMFR 308
L + L L ++++EF VAV +TNQV+A G +F +DPKKP GG+++AHA T RL R
Sbjct: 244 HLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLR 303
Query: 309 KGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
KG+GE R+CK++D+P LPEAEA + I G+ DAKD
Sbjct: 304 KGRGETRICKIYDSPCLPEAEA--------MFAINADGVGDAKD 339
>sp|Q08297|RAD51_MOUSE DNA repair protein RAD51 homolog 1 OS=Mus musculus GN=Rad51 PE=1
SV=1
Length = 339
Score = 344 bits (882), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 175/344 (50%), Positives = 231/344 (67%), Gaps = 11/344 (3%)
Query: 12 QLQLVEREDIDDEEDLF--EAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGI 69
Q+QL D EE+ F + I +L GINA DVKKL++AG +T + KK L I
Sbjct: 4 QMQLEASADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGYHTVEAVAYAPKKELINI 63
Query: 70 KGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAIT 129
KG+SEAK +KI A K+V G+ T ++ RR +I+ITTGS+ LD+LL GGIETG+IT
Sbjct: 64 KGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSIT 123
Query: 130 EAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG 189
E FGEFR+GKTQ+ HTL V QLP + GG GK YIDTEGTFRP+R++ +AER+G+
Sbjct: 124 EMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS 183
Query: 190 AVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQ 249
VLDN+ YAR + +HQ LL +A M E + LLIVDS AL+R D++GRGEL+ RQ
Sbjct: 184 DVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQM 243
Query: 250 KLGQMLSRLTKISEEFNVAVYMTNQVIAD-PGGGVFISDPKKPAGGHVLAHAVTIRLMFR 308
L + L L ++++EF VAV +TNQV+A G +F +DPKKP GG+++AHA T RL R
Sbjct: 244 HLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLR 303
Query: 309 KGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
KG+GE R+CK++D+P LPEAEA + I G+ DAKD
Sbjct: 304 KGRGETRICKIYDSPCLPEAEA--------MFAINADGVGDAKD 339
>sp|P37383|RAD51_CHICK DNA repair protein RAD51 homolog 1 OS=Gallus gallus GN=RAD51A PE=2
SV=1
Length = 339
Score = 343 bits (881), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 175/344 (50%), Positives = 231/344 (67%), Gaps = 11/344 (3%)
Query: 12 QLQLVEREDIDDEEDLF--EAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGI 69
Q+Q D EE+ F E I +L GINA DVKKL++AG +T + KK L I
Sbjct: 4 QVQFEASTDTSAEEESFGPEPISRLEQCGINANDVKKLEEAGYHTVESVAHAPKKELLNI 63
Query: 70 KGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAIT 129
KG+SEAK +KI A K+V G+ T ++ RR +I+ITTGS+ LD+LL GGIETG+IT
Sbjct: 64 KGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSIT 123
Query: 130 EAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG 189
E FGEFR+GKTQL HTL V QLP + GG GK YIDTEGTFRP+R++ +AER+G+
Sbjct: 124 ELFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS 183
Query: 190 AVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQ 249
VLDN+ YAR + +HQ LL +A M+E + LLIVDS AL+R D++GRGEL+ RQ
Sbjct: 184 DVLDNVAYARGFNTDHQTQLLYQASAMMAESRYALLIVDSATALYRTDYSGRGELSARQM 243
Query: 250 KLGQMLSRLTKISEEFNVAVYMTNQVIAD-PGGGVFISDPKKPAGGHVLAHAVTIRLMFR 308
L + L L ++++EF VAV +TNQV+A G +F +DPKKP GG+++AHA T RL R
Sbjct: 244 HLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLR 303
Query: 309 KGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
KG+GE R+CK++D+P LPEAEA + I G+ DAK+
Sbjct: 304 KGRGETRICKIYDSPCLPEAEA--------MFAINADGVGDAKE 339
>sp|P70099|RAD51_CRIGR DNA repair protein RAD51 homolog 1 OS=Cricetulus griseus GN=RAD51
PE=2 SV=1
Length = 339
Score = 343 bits (880), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 175/344 (50%), Positives = 231/344 (67%), Gaps = 11/344 (3%)
Query: 12 QLQLVEREDIDDEEDLF--EAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGI 69
Q+QL D EE+ F + I +L GI+A DVKKL++AG +T + KK L I
Sbjct: 4 QMQLEANADTSVEEESFGPQPISRLEQCGISANDVKKLEEAGFHTVEAVAYAPKKELINI 63
Query: 70 KGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAIT 129
KG+SEAK +KI A K+V G+ T ++ RR +I+ITTGS+ LD+LL GGIETG+IT
Sbjct: 64 KGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSIT 123
Query: 130 EAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG 189
E FGEFR+GKTQ+ HTL V QLP + GG GK YIDTEGTFRP+R++ +AER+G+
Sbjct: 124 EMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS 183
Query: 190 AVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQ 249
VLDN+ YAR + +HQ LL +A M E + LLIVDS AL+R D++GRGEL+ RQ
Sbjct: 184 DVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQM 243
Query: 250 KLGQMLSRLTKISEEFNVAVYMTNQVIAD-PGGGVFISDPKKPAGGHVLAHAVTIRLMFR 308
L + L L ++++EF VAV +TNQV+A G +F +DPKKP GG+++AHA T RL R
Sbjct: 244 HLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFTADPKKPIGGNIIAHASTTRLYLR 303
Query: 309 KGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
KG+GE R+CKV+D+P LPEAEA + I G+ DAKD
Sbjct: 304 KGRGETRICKVYDSPCLPEAEA--------MFAINADGVGDAKD 339
>sp|O77507|RAD51_RABIT DNA repair protein RAD51 homolog 1 OS=Oryctolagus cuniculus
GN=RAD51 PE=2 SV=1
Length = 339
Score = 341 bits (875), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 173/344 (50%), Positives = 230/344 (66%), Gaps = 11/344 (3%)
Query: 12 QLQLVEREDIDDEEDLF--EAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGI 69
Q+QL D EE+ F + + +L GINA DVKKL++AG +T + KK L I
Sbjct: 4 QMQLEANADTSVEEESFGPQPVSRLEQCGINANDVKKLEEAGFHTEEAVAYAPKKELINI 63
Query: 70 KGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAIT 129
KG+SEAK +KI A K+V G+ T ++ RR +I+ITTGS+ LD+LL GGIETG+IT
Sbjct: 64 KGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSIT 123
Query: 130 EAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG 189
E FGEFR+GKTQ+ HTL V QLP + GG GK YIDTEGTFRP+R++ +AER+G+
Sbjct: 124 EMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS 183
Query: 190 AVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQ 249
VLDN+ YAR + +HQ LL +A M E + LLIVDS AL+R D++GRGEL+ RQ
Sbjct: 184 DVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQM 243
Query: 250 KLGQMLSRLTKISEEFNVAVYMTNQVIAD-PGGGVFISDPKKPAGGHVLAHAVTIRLMFR 308
L + L L ++++EF V V +TNQV+A G +F +DPKKP GG+++AHA T RL R
Sbjct: 244 HLARFLRMLLRLADEFGVTVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLR 303
Query: 309 KGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
KG+GE R+CK++D+P LPEAEA + I G+ DAKD
Sbjct: 304 KGRGETRICKIYDSPCLPEAEA--------MFAINADGVGDAKD 339
>sp|P94102|RAD51_ARATH DNA repair protein RAD51 homolog 1 OS=Arabidopsis thaliana GN=RAD51
PE=1 SV=1
Length = 342
Score = 333 bits (854), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 170/346 (49%), Positives = 234/346 (67%), Gaps = 9/346 (2%)
Query: 8 EEQSQLQLVEREDIDDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLT 67
E++ V+++D ++ + +++L + GI + DVKKL+DAG+ T G+ +K L
Sbjct: 5 EQRRNQNAVQQQDDEETQHGPFPVEQLQAAGIASVDVKKLRDAGLCTVEGVAYTPRKDLL 64
Query: 68 GIKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGA 127
IKG+S+AKV+KI EAA K+V G+ + S +R+ +I+IT+GS+ LD++L GGIETG+
Sbjct: 65 QIKGISDAKVDKIVEAASKLVPLGFTSASQLHAQRQEIIQITSGSRELDKVLEGGIETGS 124
Query: 128 ITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMD 187
ITE +GEFRSGKTQL HTLCV QLP + GG GK YID EGTFRP R++ IA+RFG++
Sbjct: 125 ITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLN 184
Query: 188 PGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADR 247
VL+N+ YARAY +HQ LLL A+ M E F LLIVDS AL+R DF+GRGEL+ R
Sbjct: 185 GADVLENVAYARAYNTDHQSRLLLEAASMMIETRFALLIVDSATALYRTDFSGRGELSAR 244
Query: 248 QQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPK-KPAGGHVLAHAVTIRLM 306
Q L + L L K+++EF VAV +TNQV+A G + P+ KP GG+++AHA T RL
Sbjct: 245 QMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSALFAGPQFKPIGGNIMAHATTTRLA 304
Query: 307 FRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
RKG+ E+R+CKV +P LPEAEA +I+ G+ D KD
Sbjct: 305 LRKGRAEERICKVISSPCLPEAEA--------RFQISTEGVTDCKD 342
>sp|P36601|RAD51_SCHPO DNA repair protein rhp51 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp51 PE=1 SV=1
Length = 365
Score = 333 bits (854), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 167/337 (49%), Positives = 224/337 (66%), Gaps = 12/337 (3%)
Query: 20 DIDDEEDLFEA----IDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEA 75
++ DEED A + L GI A D+KK+ +AG YT + K+ L IKG+SEA
Sbjct: 32 NVQDEEDEAAAGPMPLQMLEGNGITASDIKKIHEAGYYTVESIAYTPKRQLLLIKGISEA 91
Query: 76 KVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEF 135
K +K+ A K+V G+ T ++ +RR +I ITTGS+ LD LL GG+ETG+ITE FGEF
Sbjct: 92 KADKLLGEASKLVPMGFTTATEYHIRRSELITITTGSKQLDTLLQGGVETGSITELFGEF 151
Query: 136 RSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNI 195
R+GK+Q+ HTL V QLP +M GG GK YIDTEGTFRP R++ +A+R+G++ VLDN+
Sbjct: 152 RTGKSQICHTLAVTCQLPIDMGGGEGKCLYIDTEGTFRPVRLLAVADRYGLNGEEVLDNV 211
Query: 196 IYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQML 255
YARAY +HQ LL A MSE F LL+VDS AL+R DF+GRGEL+ RQ L + +
Sbjct: 212 AYARAYNADHQLELLQQAANMMSESRFSLLVVDSCTALYRTDFSGRGELSARQMHLARFM 271
Query: 256 SRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQR 315
L ++++EF +AV +TNQV+A G F DPKKP GG++LAH+ T RL RKG+GEQR
Sbjct: 272 RTLQRLADEFGIAVVITNQVVAQVDGISFNPDPKKPIGGNILAHSSTTRLSLRKGRGEQR 331
Query: 316 VCKVFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
+CK++D+P LPE+EAI I G+ D K+
Sbjct: 332 ICKIYDSPCLPESEAI--------FAINSDGVGDPKE 360
>sp|Q9XED7|R51A2_MAIZE DNA repair protein RAD51 homolog B OS=Zea mays GN=RAD51B PE=2 SV=1
Length = 340
Score = 331 bits (849), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 168/323 (52%), Positives = 221/323 (68%), Gaps = 9/323 (2%)
Query: 31 IDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNF 90
I++L + GI A DVKKL+DAG+ T + +K L IKG+SEAKV+KI EAA K+V
Sbjct: 26 IEQLQASGIAALDVKKLKDAGLCTVESVAYSPRKDLLQIKGISEAKVDKIIEAASKLVPL 85
Query: 91 GYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCT 150
G+ + S +R +I++TTGS+ LD++L GGIETG+ITE +GEFRSGKTQL HTLCV
Sbjct: 86 GFTSASQLHAQRLEIIQLTTGSRELDQILDGGIETGSITEMYGEFRSGKTQLCHTLCVTC 145
Query: 151 QLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLL 210
QLP + GG GK YID EGTFRP RI+ IA+RFG++ VL+N+ YARAY +HQ LL
Sbjct: 146 QLPLDQGGGEGKALYIDAEGTFRPQRILQIADRFGLNGADVLENVAYARAYNTDHQSRLL 205
Query: 211 LGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVY 270
L A+ M E F L++VDS AL+R DF+GRGEL+ RQ L + L L K+++EF VAV
Sbjct: 206 LEAASMMVETRFALMVVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVV 265
Query: 271 MTNQVIADPGGGVFISDPK-KPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAE 329
+TNQV+A G + P+ KP GG+++AHA T RL RKG+GE+R+CKV +P L EAE
Sbjct: 266 ITNQVVAQVDGAAMFAGPQIKPIGGNIMAHASTTRLFLRKGRGEERICKVISSPCLAEAE 325
Query: 330 AISFSYHIILIKITPGGIADAKD 352
A +I+ G+ D KD
Sbjct: 326 A--------RFQISSEGVTDVKD 340
>sp|Q67EU8|R51A1_MAIZE DNA repair protein RAD51 homolog A OS=Zea mays GN=RAD51A PE=2 SV=2
Length = 340
Score = 325 bits (833), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 165/323 (51%), Positives = 220/323 (68%), Gaps = 9/323 (2%)
Query: 31 IDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNF 90
I++L + GI A DVKKL+D+G++T + +K L IKG+SEAK +KI EAA KIV
Sbjct: 26 IEQLQASGIAALDVKKLKDSGLHTVEAVAYTPRKDLLQIKGISEAKADKIIEAASKIVPL 85
Query: 91 GYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCT 150
G+ + S +R +I++TTGS+ LD++L GGIETG+ITE +GEFRSGKTQL HT CV
Sbjct: 86 GFTSASQLHAQRLEIIQVTTGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTPCVTC 145
Query: 151 QLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLL 210
QLP + GG GK YID EGTFRP R++ IA+RFG++ VL+N+ YARAY +HQ LL
Sbjct: 146 QLPLDQGGGEGKALYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL 205
Query: 211 LGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVY 270
L A+ M E F L++VDS AL+R DF+GRGEL+ RQ + + L L K+++EF VAV
Sbjct: 206 LEAASMMIETRFALMVVDSATALYRTDFSGRGELSARQMHMAKFLRSLQKLADEFGVAVV 265
Query: 271 MTNQVIADPGGGVFISDPK-KPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAE 329
+TNQV+A G + P+ KP GG+++AHA T RL RKG+GE+R+CKV +P L EAE
Sbjct: 266 ITNQVVAQVDGSAMFAGPQFKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAE 325
Query: 330 AISFSYHIILIKITPGGIADAKD 352
A ++ GIAD KD
Sbjct: 326 A--------RFQLASEGIADVKD 340
>sp|Q40134|RAD51_SOLLC DNA repair protein RAD51 homolog OS=Solanum lycopersicum GN=RAD51
PE=2 SV=1
Length = 342
Score = 324 bits (830), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 170/349 (48%), Positives = 232/349 (66%), Gaps = 12/349 (3%)
Query: 8 EEQSQLQLVEREDIDDEEDLFEA---IDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKK 64
E+Q + Q ++ D+ ED+ +++L + GI A DVKKL+DAG+ T ++ +K
Sbjct: 2 EQQHRNQKSMQDQNDEIEDVQHGPFPVEQLQASGIAALDVKKLKDAGLCTVESVVYAPRK 61
Query: 65 HLTGIKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIE 124
L IKG+SEAKV+KI EAA K+V G+ + S +R +I+IT+GS+ LD++L GGIE
Sbjct: 62 ELLQIKGISEAKVDKIIEAASKLVPLGFTSASQLHAQRLEIIQITSGSKELDKILEGGIE 121
Query: 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERF 184
TG+ITE +GEFR GKTQL HTLCV QLP + GG GK YID EGTFRP R++ IA+R+
Sbjct: 122 TGSITEIYGEFRCGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRY 181
Query: 185 GMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGEL 244
G++ VL+N+ YARAY +HQ LLL A+ M E F L+IVDS AL+R DF+GRGEL
Sbjct: 182 GLNGPDVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGEL 241
Query: 245 ADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPK-KPAGGHVLAHAVTI 303
+ RQ L + L L K+++EF VAV +TNQV+A G + P+ KP GG+++AHA T
Sbjct: 242 SARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAVFAGPQIKPIGGNIMAHASTT 301
Query: 304 RLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
RL RKG+ E+R+CKV +P L EAEA +I+ G+ D KD
Sbjct: 302 RLALRKGRAEERICKVVSSPCLAEAEA--------RFQISVEGVTDVKD 342
>sp|Q99133|RAD51_USTMA DNA repair protein RAD51 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=RAD51 PE=3 SV=1
Length = 339
Score = 322 bits (826), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 165/335 (49%), Positives = 223/335 (66%), Gaps = 14/335 (4%)
Query: 24 EEDLFEA-----IDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVE 78
E+D+ EA + KL GI++ D KKL ++G T + KK L +KG+SEAK +
Sbjct: 13 EDDMGEAFGPLPVSKLEEFGISSSDCKKLAESGYNTVESIAFTPKKQLLLVKGVSEAKAD 72
Query: 79 KICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSG 138
KI A ++V G+ T ++ RR +I ITTGS+ LD +LGGG+ETG+ITE +GEFR+G
Sbjct: 73 KILAEAARLVPMGFTTATEFHARRNELISITTGSKNLDAILGGGMETGSITELYGEFRTG 132
Query: 139 KTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYA 198
K+QL HTL V QLP +M GG GK YIDTE TFRP R++ +AERFG++ VLDN+ YA
Sbjct: 133 KSQLCHTLAVTCQLPVDMGGGEGKCLYIDTENTFRPTRLLAVAERFGLNGEEVLDNVAYA 192
Query: 199 RAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRL 258
RAY +HQ LL+ +A M+E F LLIVDS+ +L+R DF+GRGEL+ RQ L + L L
Sbjct: 193 RAYNADHQLQLLMQASAMMAESRFSLLIVDSLTSLYRTDFSGRGELSARQMHLAKFLRGL 252
Query: 259 TKISEEFNVAVYMTNQVIAD-PGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVC 317
++++EF VAV +TNQV+A G F +D KKP GG+++AHA T RL RKG+G QR+C
Sbjct: 253 MRLADEFGVAVVITNQVVAQVDGATAFTADAKKPIGGNIVAHASTTRLSLRKGRGNQRIC 312
Query: 318 KVFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
++ D+P LPEA+A+ I P GI D D
Sbjct: 313 RIADSPCLPEADAV--------FAIGPEGIIDPVD 339
>sp|P25454|RAD51_YEAST DNA repair protein RAD51 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD51 PE=1 SV=1
Length = 400
Score = 317 bits (812), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 168/327 (51%), Positives = 230/327 (70%), Gaps = 3/327 (0%)
Query: 8 EEQSQLQLVEREDIDDEEDL--FEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKH 65
+EQ++ Q ++ DE L F I+KL GI DVKKL+++G++T + +K
Sbjct: 58 QEQAEAQGEMEDEAYDEAALGSFVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKD 117
Query: 66 LTGIKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIET 125
L IKG+SEAK +K+ A ++V G++T +D +RR +I +TTGS+ LD LLGGG+ET
Sbjct: 118 LLEIKGISEAKADKLLNEAARLVPMGFVTAADFHMRRSELICLTTGSKNLDTLLGGGVET 177
Query: 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFG 185
G+ITE FGEFR+GK+QL HTL V Q+P ++ GG GK YIDTEGTFRP R+V IA+RFG
Sbjct: 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFG 237
Query: 186 MDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELA 245
+DP L+N+ YARAY +HQ LL A MSE F L++VDSV+AL+R DF+GRGEL+
Sbjct: 238 LDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELS 297
Query: 246 DRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGV-FISDPKKPAGGHVLAHAVTIR 304
RQ L + + L +++++F VAV +TNQV+A GG+ F DPKKP GG+++AH+ T R
Sbjct: 298 ARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAHSSTTR 357
Query: 305 LMFRKGKGEQRVCKVFDAPNLPEAEAI 331
L F+KGKG QR+CKV D+P LPEAE +
Sbjct: 358 LGFKKGKGCQRLCKVVDSPCLPEAECV 384
>sp|Q27297|RAD51_DROME DNA repair protein Rad51 homolog OS=Drosophila melanogaster
GN=spn-A PE=2 SV=1
Length = 336
Score = 309 bits (792), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 156/323 (48%), Positives = 209/323 (64%), Gaps = 8/323 (2%)
Query: 30 AIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVN 89
++ KLI I A D+K LQ A ++T + TKK L I GL KVE+I A K+V
Sbjct: 21 SVTKLIGGSITAKDIKLLQQASLHTVESVANATKKQLMAIPGLGGGKVEQIITEANKLVP 80
Query: 90 FGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVC 149
G+++ R V++++TGS+ LD+LLGGGIETG+ITE FGEFR GKTQL HTL V
Sbjct: 81 LGFLSARTFYQMRADVVQLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVT 140
Query: 150 TQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNL 209
QLP + +GG GK YIDTE TFRP+R+ IA+R+ ++ VLDN+ + RA+ + Q L
Sbjct: 141 CQLPISQKGGEGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKL 200
Query: 210 LLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAV 269
+ A + E + LLIVDS +AL+R D+ GRGELA RQ LG L L ++++EF VAV
Sbjct: 201 IQMAAGMLFESRYALLIVDSAMALYRSDYIGRGELAARQNHLGLFLRMLQRLADEFGVAV 260
Query: 270 YMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAE 329
+TNQV A G + D KKP GGH++AH+ T RL RKGKGE R+CK++D+P LPE+E
Sbjct: 261 VITNQVTASLDGAPGMFDAKKPIGGHIMAHSSTTRLYLRKGKGETRICKIYDSPCLPESE 320
Query: 330 AISFSYHIILIKITPGGIADAKD 352
A + I P GI DA++
Sbjct: 321 A--------MFAILPDGIGDARE 335
>sp|O74036|RADA_PYRFU DNA repair and recombination protein RadA OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=radA
PE=1 SV=1
Length = 349
Score = 274 bits (701), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 149/318 (46%), Positives = 203/318 (63%), Gaps = 16/318 (5%)
Query: 38 GINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSD 97
G+ +KL++AG T + + + L + G+SE KI +AA K N G +D
Sbjct: 42 GVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFMRAD 101
Query: 98 ALLRRKAVI-KITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNM 156
L+++A I +I+TGS++LD+LLGGGIET AITE FGEF SGKTQLAHTL V QLP
Sbjct: 102 EYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 161
Query: 157 RGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAK 216
G NG V +IDTE TFRP+RI IA+ G+DP VL +I ARA+ HQ L+ K
Sbjct: 162 GGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 221
Query: 217 MSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYM 271
+ E P +LLIVDS+ + FR ++ GRG LA+RQQKL + L+ L +++ +++AV++
Sbjct: 222 IKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFV 281
Query: 272 TNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAI 331
TNQV A P F DP +P GGH+LAH+ T+R+ RKGKG +R+ ++ DAP+LPE EA+
Sbjct: 282 TNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAV 339
Query: 332 SFSYHIILIKITPGGIAD 349
FS IT GI D
Sbjct: 340 -FS-------ITEKGIED 349
>sp|Q9V233|RADA_PYRAB DNA repair and recombination protein RadA OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=radA PE=3 SV=2
Length = 353
Score = 272 bits (696), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 147/318 (46%), Positives = 202/318 (63%), Gaps = 16/318 (5%)
Query: 38 GINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSD 97
G+ +KL++AG T + + + L + G+SE KI +AA K N G +D
Sbjct: 46 GVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRAD 105
Query: 98 ALLR-RKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNM 156
L+ R+++ +I+TGS++LD+LLGGGIET AITE FGEF SGKTQLAHTL V QLP
Sbjct: 106 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 165
Query: 157 RGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAK 216
G NG V +IDTE TFRP+RI IA+ G+DP VL +I ARA+ HQ L+ K
Sbjct: 166 GGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDK 225
Query: 217 MSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYM 271
+ E +P +LLIVDS+ + FR ++ GRG LA+RQQKL + L+ L +++ + +AV++
Sbjct: 226 IKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFV 285
Query: 272 TNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAI 331
TNQV A P F DP +P GGH+LAH+ T+R+ RKGKG +RV ++ DAP+LPE EA+
Sbjct: 286 TNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAV 343
Query: 332 SFSYHIILIKITPGGIAD 349
+IT GI D
Sbjct: 344 --------FRITEKGIED 353
>sp|O29269|RADA_ARCFU DNA repair and recombination protein RadA OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=radA PE=3 SV=1
Length = 337
Score = 271 bits (693), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 153/354 (43%), Positives = 211/354 (59%), Gaps = 31/354 (8%)
Query: 5 LKAEEQSQLQLVEREDIDDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKK 64
+ E + +++E EDI G+ +KL++AG T + + +
Sbjct: 1 MSEESNEETKIIELEDI---------------PGVGPETARKLREAGYSTIEAVAVASPS 45
Query: 65 HLTGIKGLSEAKVEKICEAAEKIVNFG-YITGSDALLRRKAVIKITTGSQALDELLGGGI 123
L + G++E KI +AA K+ N G + +G L RR++V KITTGS+ LDELLGGG+
Sbjct: 46 ELANVGGITEGNAVKIIQAARKLANIGGFESGDKVLERRRSVKKITTGSKDLDELLGGGV 105
Query: 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER 183
ET AITE FGEF SGKTQ+ H L V QLP + G G V IDTE TFRP+RI+ +AE
Sbjct: 106 ETQAITEFFGEFGSGKTQICHQLAVNVQLPEDEGGLEGSVIIIDTENTFRPERIIQMAEA 165
Query: 184 FGMDPGAVLDNIIYARAYTYEHQYNLLLG---LAAKMSEE--PFRLLIVDSVIALFRVDF 238
G+D VL NI A+AY HQ L+ LA K+ +E P RL+IVDS+++ FR ++
Sbjct: 166 KGLDGNEVLKNIYVAQAYNSNHQMLLVDNAKELAEKLKKEGRPVRLIIVDSLMSHFRAEY 225
Query: 239 TGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLA 298
GRG LADRQQKL + L L K E +N A+ +TNQV+A P V DP KP GGH++A
Sbjct: 226 VGRGTLADRQQKLNRHLHDLMKFGELYNAAIVVTNQVMARP--DVLFGDPTKPVGGHIVA 283
Query: 299 HAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
H T R+ +KGK + R+ ++ D+P+LPE EAI ++T GI DA++
Sbjct: 284 HTATFRIYLKKGKDDLRIARLIDSPHLPEGEAI--------FRVTERGIEDAEE 329
>sp|A3MXX9|RADA_PYRCJ DNA repair and recombination protein RadA OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=radA PE=3 SV=1
Length = 332
Score = 261 bits (667), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 142/305 (46%), Positives = 195/305 (63%), Gaps = 12/305 (3%)
Query: 46 KLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNF-GYITGSDALLRRKA 104
KL++ G YT + + K L I G SE + ++I EAA K++ +I+ + RRK
Sbjct: 39 KLKEKGYYTVRDVAYASVKELAEIVG-SEERAQQIVEAARKMLGLHSFISALEVYERRKK 97
Query: 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVA 164
+ +I+TG +ALDELLGGGIET A+TE GEF SGKTQL H L V QLP + G K
Sbjct: 98 IRRISTGVRALDELLGGGIETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEDRGGLGAKAI 157
Query: 165 YIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRL 224
YIDTE TFRP+RI+ IA+ G+DP L+NI YARAY+ +HQ L+ + + + L
Sbjct: 158 YIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSADHQMVLVEQAKSLIRQHNVAL 217
Query: 225 LIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVF 284
L+VDSVIA FR +F GR LA+RQQKL + ++ L ++++ ++VAV +TNQV+A P VF
Sbjct: 218 LVVDSVIAHFRAEFPGRENLAERQQKLNKHIADLLRLADAYDVAVVVTNQVMAQP--DVF 275
Query: 285 ISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITP 344
+P +PAGG++LAH T RL RK K R+ K+FD+P PE E +SF +IT
Sbjct: 276 FGNPLRPAGGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGE-VSF-------RITE 327
Query: 345 GGIAD 349
G+ D
Sbjct: 328 EGLVD 332
>sp|O93748|RADA_CENSY DNA repair and recombination protein RadA OS=Cenarchaeum symbiosum
(strain A) GN=radA PE=3 SV=2
Length = 398
Score = 261 bits (667), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 142/301 (47%), Positives = 185/301 (61%), Gaps = 8/301 (2%)
Query: 37 QGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEK-IVNFGYIT- 94
+G+ KKL+D+G+++ L++ L I +S EKI A K + G IT
Sbjct: 12 EGVGPVTKKKLEDSGVHSMMDLVVRGPVELGEISSMSSEICEKIVTIARKRLAETGAITK 71
Query: 95 ----GSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCT 150
GS+ RR+++ ITTG+ ALD LLGGGIET AITE FGEF SGKTQ HT+CV T
Sbjct: 72 DFASGSEIYKRRQSIGMITTGTDALDALLGGGIETQAITEVFGEFGSGKTQFCHTMCVTT 131
Query: 151 QLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLL 210
Q P G G V YIDTEGTFRP+R+V IA+ MDP +LD II ARAY HQ +L
Sbjct: 132 QKPKEEGGLGGGVMYIDTEGTFRPERVVTIAKANNMDPAKLLDGIIVARAYNSSHQVLIL 191
Query: 211 LGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVY 270
+ EE +L+I DS LFR ++ GRG LA RQQKLG+ + L +I+E +N AV
Sbjct: 192 EEAGKTIQEENIKLIISDSTTGLFRSEYLGRGTLASRQQKLGRYIRLLARIAETYNCAVL 251
Query: 271 MTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEA 330
TNQV + P F DP +P GG+V+ HA T R+ FRKG +RV K+ D+P+ P +EA
Sbjct: 252 ATNQVSSSPDS--FFGDPTRPVGGNVVGHASTYRIYFRKGGKNKRVAKIIDSPHHPASEA 309
Query: 331 I 331
+
Sbjct: 310 V 310
>sp|Q9UWR5|RADA_PYRIL DNA repair and recombination protein RadA OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=radA PE=3 SV=2
Length = 330
Score = 256 bits (655), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/305 (45%), Positives = 194/305 (63%), Gaps = 12/305 (3%)
Query: 46 KLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNF-GYITGSDALLRRKA 104
KL++ G +T + + K L I G +E + ++I EAA K++ +++ + RRK
Sbjct: 37 KLKERGFFTVRDVAFASVKELAEIVG-NEERAQQIVEAARKMLGLHSFVSALEVYERRKK 95
Query: 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVA 164
+ +I+TG +ALDELLGGGIET A+TE GEF SGKTQL H L V QLP G K
Sbjct: 96 IRRISTGVRALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAI 155
Query: 165 YIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRL 224
YIDTE TFRP+RI+ IA+ G+DP L+NI YARAY+ +HQ L+ + + + L
Sbjct: 156 YIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIRQHNVAL 215
Query: 225 LIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVF 284
LIVDSVIA FR +F GR LA+RQQKL + ++ L ++++ ++VAV +TNQV+A P VF
Sbjct: 216 LIVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITNQVMAQP--DVF 273
Query: 285 ISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITP 344
+P +PAGG++LAH T RL RK K R+ K+FD+P PE E +SF +IT
Sbjct: 274 FGNPLRPAGGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGE-VSF-------RITE 325
Query: 345 GGIAD 349
G+ D
Sbjct: 326 EGLVD 330
>sp|Q9Y8J4|RADA_DESAM DNA repair and recombination protein RadA OS=Desulfurococcus
amylolyticus GN=radA PE=3 SV=1
Length = 328
Score = 255 bits (652), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 142/336 (42%), Positives = 199/336 (59%), Gaps = 12/336 (3%)
Query: 17 EREDIDDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAK 76
E+E I + F ++ + G + D KL+ AG + +++ + L GL
Sbjct: 4 EKETIKERSSGFISVRDIPGVGSSIAD--KLEAAGYLSAWSIVVARAEELAERTGLPVLT 61
Query: 77 VEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFR 136
V+KI E A K++ + T + R + KITTGS++LDELLGGG+ET ITE FGE+
Sbjct: 62 VQKIIENARKMLGITFKTAREVKQERSNIGKITTGSKSLDELLGGGVETKTITEFFGEYG 121
Query: 137 SGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNII 196
SGKTQ+ H L V QL G NG+ YIDTEGTFR +RI +A G+DP V+DNI
Sbjct: 122 SGKTQICHQLSVNVQLTPEKGGLNGRAVYIDTEGTFRWERIEAMARALGLDPDKVMDNIY 181
Query: 197 YARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLS 256
Y RAY +HQ ++ L + + RL+I+DSV + FR ++ GR LA+RQQKL L
Sbjct: 182 YMRAYNSDHQIAIVDELFTFVPKNDVRLVILDSVTSHFRAEYPGREHLAERQQKLNSHLH 241
Query: 257 RLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRV 316
+L +++E +NVAV +TNQV+A P VF DP GGHVLAH +R+ RK KG +R+
Sbjct: 242 QLMRLAEAYNVAVVVTNQVMARP--DVFYGDPTTAVGGHVLAHTPGVRIQLRKSKGNKRI 299
Query: 317 CKVFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
+V DAP+LPE E ++ IT GI D+++
Sbjct: 300 ARVVDAPHLPEGE--------VVFVITEEGIRDSEE 327
>sp|Q8ZYR9|RADA_PYRAE DNA repair and recombination protein RadA OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=radA PE=3 SV=1
Length = 333
Score = 255 bits (651), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 148/341 (43%), Positives = 205/341 (60%), Gaps = 22/341 (6%)
Query: 10 QSQLQLVEREDIDDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGI 69
Q+Q + R D+D EE +GI KL++ G YT + + K L I
Sbjct: 14 QTQATVEVRADVDVEE----------LEGIGRVTGAKLKERGYYTVRDIAFASVKELAEI 63
Query: 70 KGLSEAKVEKICEAAEKIVNF-GYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAI 128
G +E + ++I EAA K++ +I+ + RRK + +I+TG ++LDELLGGGIET A+
Sbjct: 64 IG-NEDRAQQIIEAARKMLGLHSFISALEVYERRKKIRRISTGVRSLDELLGGGIETRAV 122
Query: 129 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDP 188
TE GEF SGKTQL H L V QLP G K YIDTE TFRP+RI+ IA+ G+D
Sbjct: 123 TEIVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDS 182
Query: 189 GAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQ 248
L NI YARAY+ +HQ L+ + + + LL+VDSVIA FR +F GR LA+RQ
Sbjct: 183 DQALHNIFYARAYSSDHQMILVEQAKSIIKQHNVALLVVDSVIAHFRSEFPGRENLAERQ 242
Query: 249 QKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFR 308
QKL + ++ L ++++ ++VAV +TNQV+A P VF +P +PAGG++LAH T RL R
Sbjct: 243 QKLNKHVADLLRLADAYDVAVVITNQVMAQP--DVFFGNPLRPAGGNILAHGATYRLWLR 300
Query: 309 KGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIAD 349
K K R+ K+FD+P PE E +SF +IT G+ D
Sbjct: 301 KSKENIRIAKIFDSPYHPEGE-VSF-------RITEEGLVD 333
>sp|B8D610|RADA_DESK1 DNA repair and recombination protein RadA OS=Desulfurococcus
kamchatkensis (strain 1221n / DSM 18924) GN=radA PE=3
SV=1
Length = 328
Score = 254 bits (650), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 142/336 (42%), Positives = 199/336 (59%), Gaps = 12/336 (3%)
Query: 17 EREDIDDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAK 76
E+E I + F ++ + G + D KL+ AG + +++ + L GL
Sbjct: 4 EKETIKERSSGFISVRDIPGVGSSIAD--KLEAAGYLSAWSIVVARAEELAERTGLPVLT 61
Query: 77 VEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFR 136
V+KI E A K++ + T + R + KITTGS++LDELLGGG+ET ITE FGE+
Sbjct: 62 VQKIIENARKMLGITFKTAREVKQERLNIGKITTGSKSLDELLGGGVETKTITEFFGEYG 121
Query: 137 SGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNII 196
SGKTQ+ H L V QL G NG+ YIDTEGTFR +RI +A G+DP V+DNI
Sbjct: 122 SGKTQICHQLSVNVQLTPEKGGLNGRAVYIDTEGTFRWERIEAMARALGLDPDKVMDNIY 181
Query: 197 YARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLS 256
Y RAY +HQ ++ L + + RL+I+DSV + FR ++ GR LA+RQQKL L
Sbjct: 182 YMRAYNSDHQIAIVDELFTFVPKNDVRLVILDSVTSHFRAEYPGREHLAERQQKLNSHLH 241
Query: 257 RLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRV 316
+L +++E +NVAV +TNQV+A P VF DP GGHVLAH +R+ RK KG +R+
Sbjct: 242 QLMRLAEAYNVAVVVTNQVMARP--DVFYGDPTTAVGGHVLAHTPGVRIQLRKSKGNKRI 299
Query: 317 CKVFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352
+V DAP+LPE E ++ IT GI D+++
Sbjct: 300 ARVVDAPHLPEGE--------VVFVITEEGIRDSEE 327
>sp|B1YC14|RADA_PYRNV DNA repair and recombination protein RadA OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=radA PE=3 SV=1
Length = 330
Score = 253 bits (647), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 138/305 (45%), Positives = 193/305 (63%), Gaps = 12/305 (3%)
Query: 46 KLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNF-GYITGSDALLRRKA 104
KL++ G +T + + K L + G +E + +I EAA K++ +++ + RRK
Sbjct: 37 KLKERGFFTVRDVAFASVKELAEVVG-NEERALQIVEAARKMLGLHSFVSALEVYERRKT 95
Query: 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVA 164
+ +I+TG +ALDELLGGGIET A+TE GEF SGKTQL H L V QLP G K
Sbjct: 96 IRRISTGVKALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAI 155
Query: 165 YIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRL 224
YIDTE TFRP+RI+ IA+ G+DP L+NI YARAY+ +HQ L+ + + + L
Sbjct: 156 YIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIKQNNVAL 215
Query: 225 LIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVF 284
L+VDSVIA FR +F GR LA+RQQKL + ++ L ++++ ++VAV +TNQV+A P VF
Sbjct: 216 LVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITNQVMAQP--DVF 273
Query: 285 ISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITP 344
+P +PAGG++LAH T RL RK K R+ K+FD+P PE E +SF +IT
Sbjct: 274 FGNPLRPAGGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGE-VSF-------RITE 325
Query: 345 GGIAD 349
G+ D
Sbjct: 326 EGLVD 330
>sp|A4WN87|RADA_PYRAR DNA repair and recombination protein RadA OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=radA PE=3
SV=1
Length = 333
Score = 251 bits (641), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 137/305 (44%), Positives = 192/305 (62%), Gaps = 12/305 (3%)
Query: 46 KLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNF-GYITGSDALLRRKA 104
KL++ G YT + + K L I G +E + +I E+A K++ +I+ + RRK
Sbjct: 40 KLKEKGFYTVKDVAFASVKELAEIIG-NEERALQIIESARKMLGLHSFISALEVYERRKK 98
Query: 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVA 164
+ +I+TG ++LDELLGGGIET A+TE GEF SGKTQL H L V QLP G K
Sbjct: 99 IRRISTGVRSLDELLGGGIETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAI 158
Query: 165 YIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRL 224
YIDTE TFRP+RI+ +A G+DP L+NI YARAY+ +HQ L+ + + + L
Sbjct: 159 YIDTENTFRPERIMQMARARGLDPDQALNNIFYARAYSSDHQMILVEHAKSIVKQHNVAL 218
Query: 225 LIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVF 284
++VDSVIA FR +F GR LA+RQQKL + ++ L ++++ ++VAV +TNQV+A P VF
Sbjct: 219 IVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITNQVMAQP--DVF 276
Query: 285 ISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITP 344
+P +PAGG++LAH T RL RK K R+ K+FD+P PE E +SF +IT
Sbjct: 277 FGNPLRPAGGNILAHGATYRLWLRKSKENIRIVKIFDSPYHPEGE-VSF-------RITE 328
Query: 345 GGIAD 349
G+ D
Sbjct: 329 EGLID 333
>sp|Q46A31|RADA_METBF DNA repair and recombination protein RadA OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=radA PE=3 SV=1
Length = 325
Score = 250 bits (638), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 142/325 (43%), Positives = 189/325 (58%), Gaps = 24/325 (7%)
Query: 38 GINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFG-YITGS 96
G+ +KL++AG T + + + L + E+ KI AA + + G + TG
Sbjct: 11 GVGPATAEKLKEAGFNTIEAVAVASPSELATTAEIGESTAAKIINAARQAADIGGFETGD 70
Query: 97 DALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNM 156
L RRK V K+TTG DE++GGGIET AITE +GEF SGKTQLAH V Q+
Sbjct: 71 IVLERRKMVGKLTTGCMEFDEMMGGGIETQAITELYGEFGSGKTQLAHQFAVNVQMDREH 130
Query: 157 RGGNGKVAYIDTEGTFRPDRIVP----IAERFGM--DPGAVLDNIIYARAYTYEHQYNLL 210
G NG V IDTE TFRP+RI ++E++GM DP L NI ARAY HQ LL
Sbjct: 131 GGLNGSVIIIDTENTFRPERIAQMVKGLSEKYGMELDPEEFLQNIHVARAYNSNHQI-LL 189
Query: 211 LGLAAKMSEE------PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEE 264
+ A ++ E P RLLIVDS++A FR ++ GRG LADRQQKL + + L + +
Sbjct: 190 VDSATDLANELREMGKPVRLLIVDSLMAHFRAEYVGRGTLADRQQKLNKHMHGLLRFGDL 249
Query: 265 FNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPN 324
FN +V +TNQV+A P F DP +P GGHV+ H T RL RK KG++R+ ++ D+PN
Sbjct: 250 FNASVVVTNQVMAKP--DAFFGDPTRPVGGHVVGHTATFRLYLRKSKGDKRIIRLVDSPN 307
Query: 325 LPEAEAISFSYHIILIKITPGGIAD 349
LPE EA+ I +T G+ D
Sbjct: 308 LPEGEAV--------IAVTTAGLTD 324
>sp|O27436|RADA_METTH DNA repair and recombination protein RadA OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=radA PE=3 SV=1
Length = 311
Score = 244 bits (622), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 141/316 (44%), Positives = 184/316 (58%), Gaps = 19/316 (6%)
Query: 39 INAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSDA 98
+ A +KL+DAG L T K L+ + E EK+ EAA + + T D
Sbjct: 10 VGAKTAQKLRDAGFGDMMRLATATAKELSVKAEIGEGVAEKVIEAARRAEKIDFETAFDV 69
Query: 99 LLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRG 158
+ RRK V +ITTGS+ALDEL+GGGIET AITE FGEF SGK+QL+H L V QLP G
Sbjct: 70 MERRKDVGRITTGSKALDELIGGGIETQAITEVFGEFGSGKSQLSHELAVTVQLPEERGG 129
Query: 159 GNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMS 218
+ + +IDTE TFRP+RI IA F +D VL+ I ARA+ HQ + +A K++
Sbjct: 130 LDAEAVFIDTENTFRPERIEQIANAFELDLEEVLNKIHIARAFNSSHQ----ILMAEKVN 185
Query: 219 E-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTN 273
E + RL+IVDS+ A FR ++ GR LA RQQKL Q L L I+ +N AV++TN
Sbjct: 186 ELIQEGKNIRLVIVDSLTAHFRAEYVGREALATRQQKLNQHLHTLQNIANTYNAAVFVTN 245
Query: 274 QVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISF 333
QV A P F P K GGHVL HA T R+ +KG +R+ ++ D+P+LPE E +
Sbjct: 246 QVQARPDA--FFGSPTKAIGGHVLGHAATYRIWLKKGLAGKRIARLVDSPHLPEGECV-- 301
Query: 334 SYHIILIKITPGGIAD 349
KIT GI D
Sbjct: 302 ------FKITTAGIVD 311
>sp|P0CW91|RADA_AERPX DNA repair and recombination protein RadA OS=Aeropyrum pernix
GN=radA PE=3 SV=1
Length = 319
Score = 244 bits (622), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 188/327 (57%), Gaps = 10/327 (3%)
Query: 25 EDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAA 84
ED E D G+ +KL +AG T + T + ++ G+ +KI +AA
Sbjct: 3 EDKREIKDITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDAA 62
Query: 85 EKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAH 144
+ +N + T D + + KITTGS+ LDELLGGGIET ITE FGEF SGKTQ+ H
Sbjct: 63 REALNIDFKTAYDLKIESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICH 122
Query: 145 TLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYE 204
L V QLP + G GK YIDTEGTFR +RI +A G+DP V+ NI + RA
Sbjct: 123 QLSVNVQLPEDKGGLEGKAVYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSH 182
Query: 205 HQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEE 264
HQ ++ L + + +L++VDSV + FR +F GR LA RQQ L + L +L ++++
Sbjct: 183 HQIAIVDKLFTMVKNDNIKLVVVDSVTSHFRAEFPGRENLAMRQQLLNRHLHQLMRLADI 242
Query: 265 FNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPN 324
FNVAV +TNQV+A P VF DP + GGHVL HA +R+ +K +G +R+ +V DAP+
Sbjct: 243 FNVAVVITNQVMARP--DVFYGDPTQAVGGHVLGHAPGVRVYLKKSRGNKRIARVVDAPH 300
Query: 325 LPEAEAISFSYHIILIKITPGGIADAK 351
LPE E + IT GI D +
Sbjct: 301 LPEGETV--------FAITEWGIRDPE 319
>sp|Q12UG7|RADA_METBU DNA repair and recombination protein RadA OS=Methanococcoides
burtonii (strain DSM 6242) GN=radA PE=3 SV=1
Length = 325
Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/318 (44%), Positives = 184/318 (57%), Gaps = 22/318 (6%)
Query: 45 KKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFG-YITGSDALLRRK 103
+KL+DAG T + + + L + E+ KI AA + + G + TG L RRK
Sbjct: 18 QKLKDAGFTTIEAIAVASPAELANSAEIGESTAAKIINAARQSADIGGFETGDLVLERRK 77
Query: 104 AVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKV 163
V K++TG DE++GGGIET +ITE +GEF SGKTQ+AH L V QLP G G V
Sbjct: 78 LVGKLSTGCTEFDEMMGGGIETQSITEMYGEFGSGKTQIAHQLAVNVQLPPEQGGLGGSV 137
Query: 164 AYIDTEGTFRPDRIVP----IAERFGM--DPGAVLDNIIYARAYTYEHQYNLL-----LG 212
IDTE TFRP+RI I+++ G+ DP L NI ARA+ HQ L+ L
Sbjct: 138 IMIDTENTFRPERIAQMVKGISDKHGIEYDPEEFLKNIHVARAFNSNHQILLVDSANELA 197
Query: 213 LAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMT 272
K +E P +LLIVDS+ A FR ++ GRG LADRQQKL + L + + + N V +T
Sbjct: 198 NELKNTEMPVKLLIVDSLTAHFRAEYIGRGTLADRQQKLNKHLHEILRFGDLSNACVVVT 257
Query: 273 NQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAIS 332
NQV++ P F DP KP GGH+L H T RL RK KGE+R+ K+ D+PNLP+ EA
Sbjct: 258 NQVMSKP--DAFFGDPTKPIGGHILGHTATFRLYIRKSKGEKRIVKLVDSPNLPDGEA-- 313
Query: 333 FSYHIILIKITPGGIADA 350
LI +T GI DA
Sbjct: 314 ------LISVTTDGIGDA 325
>sp|A8AB83|RADA_IGNH4 DNA repair and recombination protein RadA OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=radA PE=3
SV=1
Length = 327
Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/320 (43%), Positives = 190/320 (59%), Gaps = 16/320 (5%)
Query: 38 GINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSD 97
G+ KL DAG T L + T + L I G+ +KI AA ++++ + T +
Sbjct: 19 GVGPSTAAKLIDAGYGTIEALAVATPEELVAI-GIPLTTAQKIIRAARQMLDIRFRTAKE 77
Query: 98 ALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMR 157
L R + KITTGS+ LD+LLGGGIET ITE FGEF SGK+QL H V QLP
Sbjct: 78 VKLERMNLRKITTGSKNLDDLLGGGIETKTITEFFGEFGSGKSQLCHQASVNVQLPLEQG 137
Query: 158 GGN-----GKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLG 212
G + K Y+DTEGTFR +RI +A+ G+DP V+DNI Y RA +HQ ++
Sbjct: 138 GLSEGDKVAKAVYVDTEGTFRWERIEQMAKCLGLDPDQVMDNIYYIRAVNSDHQMAIVEE 197
Query: 213 LAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMT 272
L + +E +L++VDSV + FR ++ GR LA RQQKL + L +L K++E +N AV +T
Sbjct: 198 LFNLVPKENVKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLGKLAEVYNTAVIIT 257
Query: 273 NQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAIS 332
NQV+A P VF DP + GGHVL HA +R+ +K +G +R+ +V DAP+LPEAEA+
Sbjct: 258 NQVMARP--DVFYGDPTQAVGGHVLYHAPGVRVQLKKARGNKRIARVVDAPHLPEAEAV- 314
Query: 333 FSYHIILIKITPGGIADAKD 352
IT GI D +D
Sbjct: 315 -------FAITDCGIRDPED 327
>sp|P0CW92|RADA_AERPE DNA repair and recombination protein RadA OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=radA PE=3 SV=1
Length = 319
Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 188/327 (57%), Gaps = 10/327 (3%)
Query: 25 EDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAA 84
ED E D G+ +KL +AG T + T + ++ G+ +KI +AA
Sbjct: 3 EDKREIKDITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDAA 62
Query: 85 EKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAH 144
+ +N + T D + + KITTGS+ LDELLGGGIET ITE FGEF SGKTQ+ H
Sbjct: 63 REALNIDFKTAYDLKIESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICH 122
Query: 145 TLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYE 204
L V QLP + G GK Y+DTEGTFR +RI +A G+DP V+ NI + RA
Sbjct: 123 QLSVNVQLPEDKGGLEGKAVYVDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSH 182
Query: 205 HQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEE 264
HQ ++ L + + +L++VDSV + FR +F GR LA RQQ L + L +L ++++
Sbjct: 183 HQIAIVDKLFTMVKNDNIKLVVVDSVTSHFRAEFPGRENLAMRQQLLNRHLHQLMRLADI 242
Query: 265 FNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPN 324
FNVAV +TNQV+A P VF DP + GGHVL HA +R+ +K +G +R+ +V DAP+
Sbjct: 243 FNVAVVITNQVMARP--DVFYGDPTQAVGGHVLGHAPGVRVYLKKSRGNKRIARVVDAPH 300
Query: 325 LPEAEAISFSYHIILIKITPGGIADAK 351
LPE E + IT GI D +
Sbjct: 301 LPEGETV--------FAITEWGIRDPE 319
>sp|Q8TK71|RADA_METAC DNA repair and recombination protein RadA OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=radA PE=3 SV=1
Length = 325
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 137/325 (42%), Positives = 189/325 (58%), Gaps = 24/325 (7%)
Query: 38 GINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFG-YITGS 96
G+ +KL++AG T + + + L + E+ KI +A + + G + TG
Sbjct: 11 GVGPATAEKLKEAGFNTVEAVAVASPSELATTAEIGESTAAKIINSARQAADIGGFETGD 70
Query: 97 DALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNM 156
L RRK V K+TTG DE++GGGIET +ITE +GEF SGKTQ+AH L V Q+
Sbjct: 71 LVLERRKLVGKLTTGCVEFDEMMGGGIETQSITELYGEFGSGKTQVAHQLAVNVQMDKEH 130
Query: 157 RGGNGKVAYIDTEGTFRPDRIVP----IAERFGM--DPGAVLDNIIYARAYTYEHQYNLL 210
G +G V IDTE TFRP+RI ++E++GM DP L NI ARAY HQ LL
Sbjct: 131 GGLDGSVIIIDTENTFRPERITQMVKGLSEKYGMELDPEEFLQNIHVARAYNSNHQI-LL 189
Query: 211 LGLAAKMSEE------PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEE 264
+ A ++ E P RLLIVDS++A FR ++ GRG LADRQQKL + + L + +
Sbjct: 190 VDSATDLANELKEMGKPVRLLIVDSLMAHFRAEYVGRGTLADRQQKLNKHMHGLLRFGDL 249
Query: 265 FNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPN 324
FN V +TNQV+A P F DP +P GGH++ H T RL RK KGE+R+ ++ D+P+
Sbjct: 250 FNACVVVTNQVMAKPDA--FFGDPTRPVGGHIVGHTATFRLYLRKSKGEKRIIRLVDSPS 307
Query: 325 LPEAEAISFSYHIILIKITPGGIAD 349
LPE EA+ + +T G+ D
Sbjct: 308 LPEGEAV--------VAVTTAGLTD 324
>sp|Q8PZN5|RADA_METMA DNA repair and recombination protein RadA OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=radA PE=3 SV=2
Length = 325
Score = 242 bits (617), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 138/324 (42%), Positives = 190/324 (58%), Gaps = 22/324 (6%)
Query: 38 GINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFG-YITGS 96
G+ +KL++AG T + + + L + E+ KI AA + + G + TG
Sbjct: 11 GVGPATAEKLKEAGFNTIEAVAVASPSELATTAEIGESTAAKIINAARQAADIGGFETGD 70
Query: 97 DALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNM 156
L RRK V K+TTG DE++GGGIET AITE +GEF SGKTQ+AH L V Q+
Sbjct: 71 LVLERRKLVGKLTTGCTEFDEMMGGGIETQAITELYGEFGSGKTQVAHQLAVNVQMDREH 130
Query: 157 RGGNGKVAYIDTEGTFRPDRIVP----IAERFGM--DPGAVLDNIIYARAYTYEHQYNLL 210
G G V IDTE TFRP+RI ++E++GM +P L NI ARAY HQ L+
Sbjct: 131 GGLGGSVIIIDTENTFRPERITQMVNGLSEKYGMELNPEEFLQNIHVARAYNSNHQILLV 190
Query: 211 ---LGLAAKMSE--EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEF 265
+ LA ++ E +P RLLIVDS++A FR ++ GRG LADRQQKL + + L + + F
Sbjct: 191 DSAVDLANELKEMGKPVRLLIVDSLMAHFRAEYVGRGTLADRQQKLNKHMHGLLRFGDLF 250
Query: 266 NVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNL 325
N V +TNQV+A P F DP +P GGH++ H T RL RK KGE+R+ ++ D+P+L
Sbjct: 251 NACVVVTNQVMAKP--DAFFGDPTRPIGGHIVGHTATFRLYLRKSKGEKRIIRLVDSPSL 308
Query: 326 PEAEAISFSYHIILIKITPGGIAD 349
PE EA+ + +T G+ D
Sbjct: 309 PEGEAV--------VAVTTAGLTD 324
>sp|Q74MX9|RADA_NANEQ DNA repair and recombination protein RadA OS=Nanoarchaeum equitans
(strain Kin4-M) GN=radA PE=3 SV=1
Length = 325
Score = 238 bits (606), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 130/299 (43%), Positives = 182/299 (60%), Gaps = 12/299 (4%)
Query: 38 GINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAA-EKIVNFGYITGS 96
G+ +KL AG + + + + L + EA KI EAA E++ + T
Sbjct: 18 GVGPKTAEKLISAGYDSLIKIASASVEELMEAADIGEATARKIIEAAMERLGLLEFKTAE 77
Query: 97 DALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNM 156
+ L R+ +ITT S+ LD LLGGGIET A+TE +GE+ SGKTQ+ H L V QLP
Sbjct: 78 EVLEERQKTARITTMSKNLDSLLGGGIETAALTEFYGEYGSGKTQVGHQLAVDVQLPPEQ 137
Query: 157 RGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAK 216
G GK YIDTEGTFRP+RI +AE +DP L N+ + + + +HQ LAA+
Sbjct: 138 GGLEGKAVYIDTEGTFRPERIKQMAEALDLDPKKALKNVYHMKVFNTDHQM-----LAAR 192
Query: 217 MSEE------PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVY 270
+EE P +L++VDS+ ALFR ++TGRG+LA+RQ KLG+ + L +I+E +NVA+Y
Sbjct: 193 KAEELIRKGEPIKLIVVDSLTALFRAEYTGRGQLAERQHKLGRHVHDLLRIAELYNVAIY 252
Query: 271 MTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAE 329
+TNQV+A P + D + GGHVLAHA T R+ RKGK R+ ++ D+P+LPE E
Sbjct: 253 VTNQVMAKPDSFIPGLDSVQAVGGHVLAHASTYRVFLRKGKKGIRIARLVDSPHLPERE 311
>sp|Q2NE95|RADA_METST DNA repair and recombination protein RadA OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=radA PE=3 SV=1
Length = 311
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/310 (43%), Positives = 186/310 (60%), Gaps = 19/310 (6%)
Query: 45 KKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKA 104
+KL+DAG L T K L+ + E K+ EAA K + T + + RR+
Sbjct: 16 QKLRDAGFADMMRLATATPKELSVKVEIGEGVAAKVIEAARKAEKIDFETAFEVMERRED 75
Query: 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVA 164
V +ITTGS+ LDEL+GGGIET +ITE +GEF SGK+Q++H L V TQLP G +G+V
Sbjct: 76 VGRITTGSKGLDELIGGGIETQSITEVYGEFGSGKSQISHELSVTTQLPVEEGGLDGEVV 135
Query: 165 YIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE----- 219
+IDTE TFRP+RI IAE FG++ VL I ARA+ HQ + +A K++E
Sbjct: 136 FIDTENTFRPERIEQIAEGFGLNIEEVLKKIHVARAFNSSHQ----ILMADKINELIQSG 191
Query: 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADP 279
+L+I+DS++A FR ++ GR LA RQQKL Q L L I+ +NVAV +TNQV + P
Sbjct: 192 VNIKLIIIDSLMAHFRAEYVGRESLATRQQKLNQHLHTLQTIANTYNVAVLITNQVQSKP 251
Query: 280 GGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIIL 339
F P K GGHVL HA T R++ +KG +R+ ++ D+P+LPE E++
Sbjct: 252 DS--FFGTPTKAVGGHVLGHASTYRILLKKGLSGKRIARLVDSPHLPEGESV-------- 301
Query: 340 IKITPGGIAD 349
K+T G+ D
Sbjct: 302 FKVTTEGLVD 311
>sp|C3N7M8|RADA_SULIY DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=radA PE=3 SV=1
Length = 324
Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/316 (41%), Positives = 191/316 (60%), Gaps = 11/316 (3%)
Query: 38 GINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSD 97
GI+ + KL +AG + L + + + L+ G+ + +KI + A ++ + T +
Sbjct: 19 GISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALE 78
Query: 98 ALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMR 157
R V KI+TGSQALD LL GGIET +TE FGEF SGKTQL H L V QLP
Sbjct: 79 VKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138
Query: 158 GGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKM 217
G +GK YIDTEGTFR +RI +A+ G+D V++NI Y RA +HQ ++ L +
Sbjct: 139 GLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELV 198
Query: 218 SEEP-FRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276
S++P +L++VDSV + FR ++ GR LA RQQKL + L +LT+++E +++AV +TNQV+
Sbjct: 199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258
Query: 277 ADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYH 336
A P +F DP GGH L H IR+ +K +G +R+ +V DAP+LPE E
Sbjct: 259 ARP--DMFYGDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGE------- 309
Query: 337 IILIKITPGGIADAKD 352
++ +T GI DA++
Sbjct: 310 -VVFALTEEGIRDAEE 324
>sp|C3NFU5|RADA_SULIN DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=radA PE=3 SV=1
Length = 324
Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/316 (41%), Positives = 191/316 (60%), Gaps = 11/316 (3%)
Query: 38 GINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSD 97
GI+ + KL +AG + L + + + L+ G+ + +KI + A ++ + T +
Sbjct: 19 GISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALE 78
Query: 98 ALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMR 157
R V KI+TGSQALD LL GGIET +TE FGEF SGKTQL H L V QLP
Sbjct: 79 VKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138
Query: 158 GGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKM 217
G +GK YIDTEGTFR +RI +A+ G+D V++NI Y RA +HQ ++ L +
Sbjct: 139 GLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELV 198
Query: 218 SEEP-FRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276
S++P +L++VDSV + FR ++ GR LA RQQKL + L +LT+++E +++AV +TNQV+
Sbjct: 199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258
Query: 277 ADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYH 336
A P +F DP GGH L H IR+ +K +G +R+ +V DAP+LPE E
Sbjct: 259 ARP--DMFYGDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGE------- 309
Query: 337 IILIKITPGGIADAKD 352
++ +T GI DA++
Sbjct: 310 -VVFALTEEGIRDAEE 324
>sp|C3MY77|RADA_SULIM DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=radA PE=3 SV=1
Length = 324
Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/316 (41%), Positives = 191/316 (60%), Gaps = 11/316 (3%)
Query: 38 GINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSD 97
GI+ + KL +AG + L + + + L+ G+ + +KI + A ++ + T +
Sbjct: 19 GISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALE 78
Query: 98 ALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMR 157
R V KI+TGSQALD LL GGIET +TE FGEF SGKTQL H L V QLP
Sbjct: 79 VKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138
Query: 158 GGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKM 217
G +GK YIDTEGTFR +RI +A+ G+D V++NI Y RA +HQ ++ L +
Sbjct: 139 GLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELV 198
Query: 218 SEEP-FRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276
S++P +L++VDSV + FR ++ GR LA RQQKL + L +LT+++E +++AV +TNQV+
Sbjct: 199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258
Query: 277 ADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYH 336
A P +F DP GGH L H IR+ +K +G +R+ +V DAP+LPE E
Sbjct: 259 ARP--DMFYGDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGE------- 309
Query: 337 IILIKITPGGIADAKD 352
++ +T GI DA++
Sbjct: 310 -VVFALTEEGIRDAEE 324
>sp|C3MRI1|RADA_SULIL DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=radA PE=3 SV=1
Length = 324
Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/316 (41%), Positives = 191/316 (60%), Gaps = 11/316 (3%)
Query: 38 GINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSD 97
GI+ + KL +AG + L + + + L+ G+ + +KI + A ++ + T +
Sbjct: 19 GISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALE 78
Query: 98 ALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMR 157
R V KI+TGSQALD LL GGIET +TE FGEF SGKTQL H L V QLP
Sbjct: 79 VKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138
Query: 158 GGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKM 217
G +GK YIDTEGTFR +RI +A+ G+D V++NI Y RA +HQ ++ L +
Sbjct: 139 GLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELV 198
Query: 218 SEEP-FRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276
S++P +L++VDSV + FR ++ GR LA RQQKL + L +LT+++E +++AV +TNQV+
Sbjct: 199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258
Query: 277 ADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYH 336
A P +F DP GGH L H IR+ +K +G +R+ +V DAP+LPE E
Sbjct: 259 ARP--DMFYGDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGE------- 309
Query: 337 IILIKITPGGIADAKD 352
++ +T GI DA++
Sbjct: 310 -VVFALTEEGIRDAEE 324
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,024,131
Number of Sequences: 539616
Number of extensions: 5840315
Number of successful extensions: 17964
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 668
Number of HSP's that attempted gapping in prelim test: 16846
Number of HSP's gapped (non-prelim): 872
length of query: 352
length of database: 191,569,459
effective HSP length: 118
effective length of query: 234
effective length of database: 127,894,771
effective search space: 29927376414
effective search space used: 29927376414
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)