Query 047388
Match_columns 352
No_of_seqs 342 out of 3037
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 10:38:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03187 meiotic recombination 100.0 2.3E-66 5E-71 482.6 35.8 344 1-352 1-344 (344)
2 KOG1434 Meiotic recombination 100.0 7.1E-66 1.5E-70 442.7 16.2 323 22-352 11-335 (335)
3 TIGR02238 recomb_DMC1 meiotic 100.0 4.7E-63 1E-67 457.9 33.7 312 31-350 1-313 (313)
4 PTZ00035 Rad51 protein; Provis 100.0 1.8E-62 4E-67 458.7 34.9 327 18-352 10-337 (337)
5 PLN03186 DNA repair protein RA 100.0 8.6E-62 1.9E-66 452.7 34.2 331 14-352 11-342 (342)
6 TIGR02239 recomb_RAD51 DNA rep 100.0 2.8E-58 6.2E-63 427.3 33.2 314 31-352 1-316 (316)
7 PF08423 Rad51: Rad51; InterP 100.0 3.9E-54 8.5E-59 389.2 24.6 254 90-351 2-256 (256)
8 PRK04301 radA DNA repair and r 100.0 1.7E-51 3.7E-56 384.7 34.5 312 27-350 4-317 (317)
9 TIGR02236 recomb_radA DNA repa 100.0 9.6E-51 2.1E-55 379.1 34.1 303 37-349 5-310 (310)
10 cd01123 Rad51_DMC1_radA Rad51_ 100.0 3.3E-41 7.2E-46 302.9 25.6 233 108-348 1-235 (235)
11 COG0468 RecA RecA/RadA recombi 100.0 8.3E-40 1.8E-44 294.9 27.6 256 72-351 5-268 (279)
12 cd01393 recA_like RecA is a b 100.0 1.3E-37 2.8E-42 278.0 24.7 222 108-331 1-225 (226)
13 KOG1564 DNA repair protein RHP 100.0 9.4E-38 2E-42 272.8 21.8 286 55-350 32-351 (351)
14 KOG1433 DNA repair protein RAD 100.0 4.5E-39 9.7E-44 294.1 9.0 308 22-351 15-323 (326)
15 PRK09361 radB DNA repair and r 100.0 1.6E-36 3.4E-41 270.8 25.1 223 106-351 3-225 (225)
16 cd01394 radB RadB. The archaea 100.0 2.2E-34 4.7E-39 255.8 24.4 218 108-348 1-218 (218)
17 TIGR02237 recomb_radB DNA repa 100.0 2.4E-33 5.1E-38 247.5 23.6 209 115-348 1-209 (209)
18 COG1066 Sms Predicted ATP-depe 100.0 5.4E-34 1.2E-38 262.5 16.8 261 51-352 6-280 (456)
19 cd00983 recA RecA is a bacter 100.0 2.2E-32 4.8E-37 252.1 22.6 242 81-348 6-265 (325)
20 PRK09354 recA recombinase A; P 100.0 4.2E-32 9.1E-37 251.9 23.8 244 80-349 10-271 (349)
21 PRK09519 recA DNA recombinatio 100.0 2E-32 4.3E-37 275.6 23.4 217 102-345 35-265 (790)
22 TIGR02012 tigrfam_recA protein 100.0 1.4E-31 3.1E-36 246.6 20.4 221 103-349 31-266 (321)
23 cd01121 Sms Sms (bacterial rad 100.0 8.8E-31 1.9E-35 247.7 22.1 259 53-351 1-269 (372)
24 TIGR03878 thermo_KaiC_2 KaiC d 100.0 1.7E-30 3.8E-35 235.9 21.0 217 107-350 3-254 (259)
25 PRK11823 DNA repair protein Ra 100.0 3.3E-30 7.1E-35 250.2 21.7 258 52-351 7-267 (446)
26 TIGR00416 sms DNA repair prote 100.0 3.5E-30 7.6E-35 250.1 21.0 260 52-351 7-281 (454)
27 PRK04328 hypothetical protein; 100.0 2.5E-29 5.4E-34 227.2 21.5 209 106-348 3-232 (249)
28 TIGR03877 thermo_KaiC_1 KaiC d 100.0 4.4E-29 9.6E-34 224.2 21.4 208 107-348 2-230 (237)
29 PF06745 KaiC: KaiC; InterPro 100.0 7.7E-29 1.7E-33 221.3 16.4 208 108-348 1-221 (226)
30 PF00154 RecA: recA bacterial 100.0 1.3E-26 2.8E-31 213.1 23.9 208 103-329 29-250 (322)
31 TIGR03881 KaiC_arch_4 KaiC dom 99.9 5.8E-26 1.2E-30 203.2 21.4 208 107-348 1-226 (229)
32 TIGR03880 KaiC_arch_3 KaiC dom 99.9 3E-25 6.5E-30 197.9 21.9 208 111-349 1-217 (224)
33 TIGR02655 circ_KaiC circadian 99.9 1.4E-25 3E-30 220.9 21.0 214 104-348 241-460 (484)
34 PRK06067 flagellar accessory p 99.9 4.2E-25 9.1E-30 198.3 20.7 211 104-348 3-225 (234)
35 PRK09302 circadian clock prote 99.9 8.8E-25 1.9E-29 217.2 20.6 214 104-348 251-470 (509)
36 PRK09302 circadian clock prote 99.9 1.7E-24 3.8E-29 215.1 20.4 216 103-348 8-237 (509)
37 TIGR02655 circ_KaiC circadian 99.9 2.7E-24 5.8E-29 211.8 19.7 211 107-348 2-227 (484)
38 cd01122 GP4d_helicase GP4d_hel 99.9 7.5E-24 1.6E-28 194.3 19.8 213 105-329 10-255 (271)
39 PHA02542 41 41 helicase; Provi 99.9 1.3E-23 2.8E-28 204.7 19.1 211 105-329 169-410 (473)
40 PRK08760 replicative DNA helic 99.9 1.4E-23 3E-28 205.4 19.2 209 105-331 209-454 (476)
41 TIGR03600 phage_DnaB phage rep 99.9 1.8E-23 3.8E-28 203.3 19.5 211 105-331 174-418 (421)
42 PRK09165 replicative DNA helic 99.9 2.1E-23 4.6E-28 205.3 17.9 219 105-331 197-474 (497)
43 TIGR00665 DnaB replicative DNA 99.9 4.5E-23 9.9E-28 201.3 19.3 209 105-331 175-419 (434)
44 PF03796 DnaB_C: DnaB-like hel 99.9 7.2E-23 1.6E-27 186.5 17.9 205 107-331 1-244 (259)
45 PRK05595 replicative DNA helic 99.9 1E-22 2.2E-27 198.8 19.3 209 105-331 181-425 (444)
46 PRK06321 replicative DNA helic 99.9 9.8E-23 2.1E-27 198.6 19.1 212 105-331 206-452 (472)
47 PRK07004 replicative DNA helic 99.9 3.2E-22 6.9E-27 195.2 21.8 212 105-331 193-438 (460)
48 PRK08006 replicative DNA helic 99.9 2.3E-22 5E-27 196.2 19.5 212 105-331 204-450 (471)
49 cd00984 DnaB_C DnaB helicase C 99.9 1.4E-22 3E-27 182.8 16.6 203 114-331 2-237 (242)
50 PRK05636 replicative DNA helic 99.9 1.4E-22 3E-27 198.9 18.0 214 105-331 245-489 (505)
51 PRK05748 replicative DNA helic 99.9 2.7E-22 5.8E-27 196.3 19.3 210 105-331 183-429 (448)
52 PRK06904 replicative DNA helic 99.9 2.5E-22 5.4E-27 196.2 18.3 209 105-331 201-449 (472)
53 PRK08506 replicative DNA helic 99.9 3E-22 6.4E-27 196.2 18.8 211 105-331 172-438 (472)
54 PRK08840 replicative DNA helic 99.9 8E-22 1.7E-26 192.1 20.2 212 105-331 197-443 (464)
55 PRK08533 flagellar accessory p 99.9 1.8E-21 3.9E-26 173.7 19.7 210 105-348 3-223 (230)
56 PRK06749 replicative DNA helic 99.9 1.4E-21 3.1E-26 188.8 19.8 209 105-331 166-414 (428)
57 COG0467 RAD55 RecA-superfamily 99.9 3.8E-21 8.2E-26 175.3 19.4 212 105-349 2-232 (260)
58 COG0305 DnaB Replicative DNA h 99.9 2.2E-21 4.8E-26 184.1 16.3 209 105-331 176-420 (435)
59 PRK05973 replicative DNA helic 99.9 2.7E-20 5.9E-25 165.1 18.0 185 64-282 15-199 (237)
60 COG2874 FlaH Predicted ATPases 99.8 6E-18 1.3E-22 144.1 18.9 208 107-348 9-228 (235)
61 PRK07773 replicative DNA helic 99.8 5.8E-19 1.3E-23 185.1 15.7 163 105-281 197-382 (886)
62 PF13481 AAA_25: AAA domain; P 99.8 2.9E-18 6.3E-23 149.1 11.2 164 105-277 11-190 (193)
63 cd01124 KaiC KaiC is a circadi 99.7 1.2E-16 2.6E-21 138.2 17.5 174 128-328 1-186 (187)
64 cd01125 repA Hexameric Replica 99.7 8.5E-15 1.8E-19 131.8 19.7 173 126-310 1-191 (239)
65 cd01120 RecA-like_NTPases RecA 99.5 1.1E-13 2.4E-18 116.2 12.8 164 128-309 1-165 (165)
66 KOG2859 DNA repair protein, me 99.5 4.6E-13 1E-17 114.0 14.3 153 125-277 37-211 (293)
67 COG3598 RepA RecA-family ATPas 99.5 2.5E-13 5.5E-18 122.2 10.4 178 119-309 82-270 (402)
68 KOG2373 Predicted mitochondria 99.4 2.5E-12 5.3E-17 116.8 9.2 202 111-327 259-478 (514)
69 COG1126 GlnQ ABC-type polar am 99.2 1E-10 2.2E-15 100.5 12.4 135 122-277 24-197 (240)
70 COG1136 SalX ABC-type antimicr 99.1 7.6E-10 1.6E-14 97.2 12.0 151 122-310 27-218 (226)
71 COG1125 OpuBA ABC-type proline 99.1 3.6E-10 7.8E-15 99.3 8.2 136 122-277 23-197 (309)
72 COG1127 Ttg2A ABC-type transpo 99.1 3.8E-10 8.2E-15 98.5 8.2 136 122-277 30-207 (263)
73 COG1135 AbcC ABC-type metal io 99.1 7E-10 1.5E-14 100.1 8.9 144 112-276 19-202 (339)
74 COG1124 DppF ABC-type dipeptid 99.0 4E-09 8.7E-14 92.4 13.0 61 220-310 158-218 (252)
75 COG1120 FepC ABC-type cobalami 99.0 3.6E-09 7.7E-14 94.8 12.3 133 122-275 24-198 (258)
76 COG1116 TauB ABC-type nitrate/ 99.0 6.7E-10 1.5E-14 97.9 6.1 136 122-277 25-192 (248)
77 COG1131 CcmA ABC-type multidru 99.0 6.3E-09 1.4E-13 96.3 12.4 46 220-277 153-198 (293)
78 COG4619 ABC-type uncharacteriz 98.9 1.7E-08 3.7E-13 83.5 12.0 148 110-277 14-195 (223)
79 COG3842 PotA ABC-type spermidi 98.9 1.3E-09 2.9E-14 101.8 6.0 144 112-275 18-196 (352)
80 COG4608 AppF ABC-type oligopep 98.9 9.6E-09 2.1E-13 91.8 10.8 138 113-276 27-170 (268)
81 COG1121 ZnuC ABC-type Mn/Zn tr 98.9 3.1E-09 6.6E-14 94.8 6.9 59 221-310 157-215 (254)
82 COG1117 PstB ABC-type phosphat 98.9 6.1E-09 1.3E-13 89.4 7.8 141 121-277 28-209 (253)
83 COG3638 ABC-type phosphate/pho 98.9 2.1E-08 4.5E-13 87.5 11.0 149 108-277 13-209 (258)
84 PRK04296 thymidine kinase; Pro 98.9 7.5E-08 1.6E-12 83.5 14.2 139 126-310 2-142 (190)
85 COG1122 CbiO ABC-type cobalt t 98.8 9.2E-09 2E-13 91.7 8.1 153 121-310 25-215 (235)
86 cd03246 ABCC_Protease_Secretio 98.8 1.8E-08 3.9E-13 86.0 8.4 126 122-276 24-156 (173)
87 COG3840 ThiQ ABC-type thiamine 98.8 2.6E-08 5.7E-13 83.5 9.0 136 122-277 21-191 (231)
88 PF13479 AAA_24: AAA domain 98.8 1.2E-07 2.7E-12 83.7 14.0 162 126-320 3-189 (213)
89 cd03216 ABC_Carb_Monos_I This 98.8 6E-08 1.3E-12 82.0 11.4 122 122-277 22-143 (163)
90 cd03238 ABC_UvrA The excision 98.8 7.3E-08 1.6E-12 82.4 11.9 128 122-277 17-150 (176)
91 TIGR01184 ntrCD nitrate transp 98.8 2.5E-08 5.3E-13 89.2 9.3 60 221-310 132-191 (230)
92 cd03229 ABC_Class3 This class 98.8 5.5E-08 1.2E-12 83.4 10.5 132 122-277 22-162 (178)
93 cd03230 ABC_DR_subfamily_A Thi 98.8 7E-08 1.5E-12 82.4 10.7 127 122-277 22-156 (173)
94 cd03258 ABC_MetN_methionine_tr 98.8 1.8E-07 3.8E-12 83.8 13.8 59 221-309 158-216 (233)
95 TIGR02315 ABC_phnC phosphonate 98.8 1.9E-07 4.1E-12 84.2 14.0 59 221-309 163-221 (243)
96 cd00544 CobU Adenosylcobinamid 98.8 1.4E-07 3.1E-12 80.0 12.2 88 128-238 1-90 (169)
97 cd03256 ABC_PhnC_transporter A 98.8 1.8E-07 3.9E-12 84.1 13.7 59 221-309 162-220 (241)
98 TIGR02314 ABC_MetN D-methionin 98.8 1.5E-07 3.1E-12 89.0 13.4 136 122-277 27-202 (343)
99 COG0410 LivF ABC-type branched 98.7 8.8E-08 1.9E-12 83.4 10.8 135 122-276 25-197 (237)
100 COG3839 MalK ABC-type sugar tr 98.7 2.3E-08 5E-13 93.0 7.6 133 122-274 25-192 (338)
101 PRK11153 metN DL-methionine tr 98.7 1.3E-07 2.7E-12 89.7 12.7 46 220-277 157-202 (343)
102 TIGR00960 3a0501s02 Type II (G 98.7 2.1E-07 4.6E-12 82.3 13.4 27 122-148 25-51 (216)
103 PRK13537 nodulation ABC transp 98.7 9.7E-08 2.1E-12 89.1 11.3 45 220-277 155-199 (306)
104 cd03214 ABC_Iron-Siderophores_ 98.7 2.4E-07 5.3E-12 79.6 13.0 130 122-277 21-159 (180)
105 COG1123 ATPase components of v 98.7 1.3E-07 2.9E-12 92.5 12.4 60 221-310 447-506 (539)
106 PRK13650 cbiO cobalt transport 98.7 6.4E-08 1.4E-12 89.2 9.8 136 121-277 28-202 (279)
107 cd03298 ABC_ThiQ_thiamine_tran 98.7 6.3E-08 1.4E-12 85.3 9.2 45 221-277 146-190 (211)
108 COG2884 FtsE Predicted ATPase 98.7 5.9E-08 1.3E-12 81.9 8.3 149 107-276 10-197 (223)
109 COG1118 CysA ABC-type sulfate/ 98.7 3.2E-08 7E-13 89.4 7.1 135 122-275 24-197 (345)
110 PRK13635 cbiO cobalt transport 98.7 4E-08 8.8E-13 90.5 8.0 45 221-277 158-202 (279)
111 PRK13636 cbiO cobalt transport 98.7 1.5E-07 3.2E-12 86.9 11.5 45 221-277 159-203 (283)
112 TIGR01166 cbiO cobalt transpor 98.7 8.6E-08 1.9E-12 83.1 9.3 27 122-148 14-40 (190)
113 TIGR02211 LolD_lipo_ex lipopro 98.7 1.9E-07 4.2E-12 82.8 11.7 45 221-277 159-203 (221)
114 cd03293 ABC_NrtD_SsuB_transpor 98.7 2.8E-08 6.1E-13 88.2 6.3 58 221-308 149-206 (220)
115 PRK13634 cbiO cobalt transport 98.7 1.1E-07 2.4E-12 88.0 10.5 45 221-277 163-207 (290)
116 TIGR01188 drrA daunorubicin re 98.7 2.9E-07 6.2E-12 85.8 13.3 45 220-277 141-185 (302)
117 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.7 3.5E-08 7.6E-13 87.4 6.8 45 221-277 158-202 (218)
118 PRK11650 ugpC glycerol-3-phosp 98.7 3.1E-08 6.8E-13 94.2 6.8 135 122-276 26-195 (356)
119 cd03223 ABCD_peroxisomal_ALDP 98.7 4.4E-08 9.4E-13 83.1 7.1 27 122-148 23-49 (166)
120 cd03259 ABC_Carb_Solutes_like 98.7 6.3E-08 1.4E-12 85.5 8.3 59 221-309 148-206 (213)
121 PF07088 GvpD: GvpD gas vesicl 98.7 2.8E-07 6.1E-12 85.9 12.7 174 124-329 8-198 (484)
122 COG3845 ABC-type uncharacteriz 98.7 1.2E-07 2.6E-12 90.8 10.5 144 107-277 13-201 (501)
123 cd03222 ABC_RNaseL_inhibitor T 98.7 8.8E-08 1.9E-12 81.9 8.8 128 122-310 21-148 (177)
124 PRK13640 cbiO cobalt transport 98.7 6.6E-08 1.4E-12 89.2 8.6 45 221-277 161-205 (282)
125 TIGR01186 proV glycine betaine 98.7 1.7E-08 3.7E-13 96.0 4.7 136 122-277 15-191 (363)
126 PRK13536 nodulation factor exp 98.7 2E-07 4.3E-12 88.2 11.9 45 220-277 189-233 (340)
127 cd03261 ABC_Org_Solvent_Resist 98.7 3E-07 6.5E-12 82.4 12.6 59 221-309 154-212 (235)
128 cd03262 ABC_HisP_GlnQ_permease 98.7 2.4E-07 5.1E-12 81.8 11.6 27 122-148 22-48 (213)
129 PRK13652 cbiO cobalt transport 98.7 1.5E-07 3.2E-12 86.6 10.6 45 221-277 155-199 (277)
130 COG4586 ABC-type uncharacteriz 98.7 2.7E-07 5.9E-12 82.1 11.6 46 220-277 173-218 (325)
131 PRK13633 cobalt transporter AT 98.7 1.2E-07 2.7E-12 87.3 9.9 45 221-277 162-206 (280)
132 COG4107 PhnK ABC-type phosphon 98.7 4E-07 8.7E-12 75.9 11.6 43 122-170 28-70 (258)
133 PRK09452 potA putrescine/sperm 98.7 5E-08 1.1E-12 93.3 7.3 135 122-276 36-205 (375)
134 PRK11432 fbpC ferric transport 98.7 4.9E-08 1.1E-12 92.6 7.2 45 221-277 154-198 (351)
135 PRK09544 znuC high-affinity zi 98.7 5E-07 1.1E-11 81.9 13.5 139 122-277 26-182 (251)
136 PRK10851 sulfate/thiosulfate t 98.7 5.3E-08 1.2E-12 92.5 7.5 44 221-276 154-197 (353)
137 PRK11248 tauB taurine transpor 98.7 5.7E-08 1.2E-12 88.3 7.2 60 220-309 145-204 (255)
138 cd03225 ABC_cobalt_CbiO_domain 98.7 1.2E-07 2.5E-12 83.6 9.0 27 122-148 23-49 (211)
139 PRK11629 lolD lipoprotein tran 98.7 4.3E-07 9.4E-12 81.3 12.9 45 221-277 163-207 (233)
140 cd03301 ABC_MalK_N The N-termi 98.6 6.4E-08 1.4E-12 85.4 7.3 45 221-277 148-192 (213)
141 TIGR03608 L_ocin_972_ABC putat 98.6 3.5E-07 7.5E-12 80.2 11.7 27 122-148 20-46 (206)
142 COG1123 ATPase components of v 98.6 2.3E-07 5E-12 90.9 11.4 44 221-276 172-215 (539)
143 TIGR01618 phage_P_loop phage n 98.6 1.5E-06 3.1E-11 76.7 15.4 164 126-323 12-197 (220)
144 cd03215 ABC_Carb_Monos_II This 98.6 3.9E-07 8.4E-12 78.5 11.6 134 122-277 22-165 (182)
145 PRK11308 dppF dipeptide transp 98.6 2.6E-07 5.6E-12 86.9 11.4 45 221-277 172-216 (327)
146 cd03265 ABC_DrrA DrrA is the A 98.6 4.5E-07 9.7E-12 80.5 12.2 45 221-277 149-193 (220)
147 cd03292 ABC_FtsE_transporter F 98.6 5.2E-07 1.1E-11 79.6 12.5 27 122-148 23-49 (214)
148 COG0444 DppD ABC-type dipeptid 98.6 1.8E-07 3.8E-12 85.6 9.6 43 221-275 171-213 (316)
149 cd03296 ABC_CysA_sulfate_impor 98.6 9E-08 2E-12 86.1 7.8 59 221-309 154-212 (239)
150 cd03294 ABC_Pro_Gly_Bertaine T 98.6 1.2E-07 2.6E-12 86.9 8.6 60 220-309 177-236 (269)
151 PRK10584 putative ABC transpor 98.6 5E-07 1.1E-11 80.6 12.4 45 221-277 164-208 (228)
152 PRK13646 cbiO cobalt transport 98.6 1.4E-07 3.1E-12 87.1 9.1 45 221-277 163-207 (286)
153 COG4172 ABC-type uncharacteriz 98.6 8.4E-07 1.8E-11 83.1 13.9 61 220-310 443-503 (534)
154 TIGR03265 PhnT2 putative 2-ami 98.6 5.4E-08 1.2E-12 92.5 6.3 45 221-277 152-196 (353)
155 COG4604 CeuD ABC-type enteroch 98.6 3.9E-07 8.6E-12 77.5 10.7 42 122-170 23-64 (252)
156 COG4555 NatA ABC-type Na+ tran 98.6 6E-07 1.3E-11 76.6 11.9 42 122-170 24-65 (245)
157 PRK13548 hmuV hemin importer A 98.6 2.5E-07 5.5E-12 84.2 10.4 46 220-277 157-202 (258)
158 PRK13647 cbiO cobalt transport 98.6 1.5E-07 3.2E-12 86.5 9.0 44 221-277 156-199 (274)
159 cd03232 ABC_PDR_domain2 The pl 98.6 3E-07 6.5E-12 79.9 10.4 127 122-276 29-168 (192)
160 PRK13637 cbiO cobalt transport 98.6 1.5E-07 3.3E-12 87.0 9.0 45 221-277 162-206 (287)
161 PRK11247 ssuB aliphatic sulfon 98.6 4.8E-08 1E-12 88.8 5.5 45 221-277 151-195 (257)
162 PRK10908 cell division protein 98.6 1.5E-06 3.2E-11 77.3 15.0 27 122-148 24-50 (222)
163 PRK11144 modC molybdate transp 98.6 6.3E-08 1.4E-12 92.1 6.5 44 221-276 146-189 (352)
164 cd03235 ABC_Metallic_Cations A 98.6 7.1E-08 1.5E-12 85.1 6.4 27 122-148 21-47 (213)
165 smart00382 AAA ATPases associa 98.6 4.9E-07 1.1E-11 73.0 10.9 124 126-275 2-125 (148)
166 PRK11607 potG putrescine trans 98.6 8.1E-08 1.8E-12 92.0 7.1 44 221-276 167-210 (377)
167 PRK11300 livG leucine/isoleuci 98.6 8.3E-07 1.8E-11 80.6 13.4 59 221-309 171-229 (255)
168 cd03268 ABC_BcrA_bacitracin_re 98.6 6.7E-07 1.4E-11 78.6 12.4 27 122-148 22-48 (208)
169 PRK13648 cbiO cobalt transport 98.6 2.5E-07 5.4E-12 84.8 10.0 45 221-277 160-204 (269)
170 PRK11000 maltose/maltodextrin 98.6 8.5E-08 1.8E-12 91.7 7.1 44 221-276 151-194 (369)
171 TIGR02673 FtsE cell division A 98.6 5.3E-07 1.2E-11 79.6 11.7 27 122-148 24-50 (214)
172 cd03247 ABCC_cytochrome_bd The 98.6 4.3E-07 9.3E-12 77.9 10.5 129 121-277 23-158 (178)
173 cd03237 ABC_RNaseL_inhibitor_d 98.6 1.3E-06 2.7E-11 79.0 14.0 141 120-277 19-177 (246)
174 COG4175 ProV ABC-type proline/ 98.6 2.7E-07 5.9E-12 83.8 9.4 135 122-276 50-225 (386)
175 cd03219 ABC_Mj1267_LivG_branch 98.6 6.9E-07 1.5E-11 80.1 12.1 58 221-309 161-218 (236)
176 PRK13651 cobalt transporter AT 98.6 7.1E-07 1.5E-11 83.2 12.5 27 122-148 29-55 (305)
177 PRK10247 putative ABC transpor 98.6 1.2E-07 2.6E-12 84.4 7.1 45 221-277 155-199 (225)
178 PRK09536 btuD corrinoid ABC tr 98.6 1.9E-07 4.1E-12 90.0 8.8 27 122-148 25-51 (402)
179 cd03266 ABC_NatA_sodium_export 98.6 7.7E-07 1.7E-11 78.8 12.1 27 122-148 27-53 (218)
180 PRK10575 iron-hydroxamate tran 98.6 7.1E-07 1.5E-11 81.6 12.2 45 221-277 165-209 (265)
181 TIGR03258 PhnT 2-aminoethylpho 98.6 1E-07 2.2E-12 90.8 6.8 45 221-277 155-200 (362)
182 cd03228 ABCC_MRP_Like The MRP 98.6 2.7E-07 5.8E-12 78.6 8.7 127 122-277 24-156 (171)
183 PRK05800 cobU adenosylcobinami 98.6 8.1E-07 1.7E-11 75.5 11.5 91 127-237 2-92 (170)
184 cd03224 ABC_TM1139_LivF_branch 98.6 3E-07 6.4E-12 81.7 9.2 27 122-148 22-48 (222)
185 TIGR01288 nodI ATP-binding ABC 98.6 7.4E-07 1.6E-11 83.1 12.3 45 220-277 152-196 (303)
186 PRK13540 cytochrome c biogenes 98.6 1E-06 2.3E-11 77.0 12.5 27 122-148 23-49 (200)
187 TIGR03410 urea_trans_UrtE urea 98.6 6E-07 1.3E-11 80.2 11.2 59 221-309 149-207 (230)
188 PRK10771 thiQ thiamine transpo 98.6 1.8E-07 3.9E-12 83.7 7.8 45 221-277 147-191 (232)
189 COG4148 ModC ABC-type molybdat 98.6 2E-07 4.4E-12 83.2 7.8 141 122-277 20-190 (352)
190 PF13401 AAA_22: AAA domain; P 98.6 1.3E-07 2.9E-12 76.4 6.1 123 124-275 2-125 (131)
191 PRK11831 putative ABC transpor 98.6 7.2E-07 1.6E-11 81.7 11.6 44 221-276 161-204 (269)
192 TIGR02142 modC_ABC molybdenum 98.6 1.3E-07 2.9E-12 89.9 7.0 45 221-277 149-193 (354)
193 PRK13638 cbiO cobalt transport 98.6 3.2E-07 6.9E-12 84.1 9.2 27 122-148 23-49 (271)
194 PRK13642 cbiO cobalt transport 98.6 2.9E-07 6.2E-12 84.7 8.9 45 221-277 158-202 (277)
195 PRK09984 phosphonate/organopho 98.6 1.1E-06 2.3E-11 80.3 12.6 45 221-277 170-214 (262)
196 PRK15079 oligopeptide ABC tran 98.5 3.8E-07 8.2E-12 85.9 9.8 45 221-277 179-223 (331)
197 PRK13632 cbiO cobalt transport 98.5 3.6E-07 7.8E-12 83.8 9.4 29 121-149 30-58 (271)
198 PRK13639 cbiO cobalt transport 98.5 2.8E-07 6.1E-12 84.7 8.7 28 121-148 23-50 (275)
199 cd00267 ABC_ATPase ABC (ATP-bi 98.5 7.5E-07 1.6E-11 74.7 10.6 121 122-277 21-141 (157)
200 cd03217 ABC_FeS_Assembly ABC-t 98.5 5.1E-07 1.1E-11 78.9 9.9 134 122-277 22-165 (200)
201 PRK14250 phosphate ABC transpo 98.5 3.5E-07 7.6E-12 82.4 9.1 59 221-309 149-207 (241)
202 PRK13644 cbiO cobalt transport 98.5 4.2E-07 9.1E-12 83.5 9.6 27 122-148 24-50 (274)
203 cd03213 ABCG_EPDR ABCG transpo 98.5 6.6E-07 1.4E-11 77.9 10.4 130 122-276 31-171 (194)
204 cd03218 ABC_YhbG The ABC trans 98.5 8.8E-07 1.9E-11 79.2 11.5 27 122-148 22-48 (232)
205 PRK10253 iron-enterobactin tra 98.5 1.1E-06 2.5E-11 80.2 12.4 45 221-277 161-205 (265)
206 TIGR03864 PQQ_ABC_ATP ABC tran 98.5 6.7E-07 1.4E-11 80.3 10.5 45 221-277 150-194 (236)
207 TIGR01277 thiQ thiamine ABC tr 98.5 1.3E-07 2.9E-12 83.5 5.8 45 221-277 146-190 (213)
208 COG0411 LivG ABC-type branched 98.5 2.2E-07 4.8E-12 81.6 7.0 60 221-310 167-226 (250)
209 COG4598 HisP ABC-type histidin 98.5 1.1E-06 2.5E-11 73.6 10.8 149 123-310 29-228 (256)
210 TIGR02323 CP_lyasePhnK phospho 98.5 1.8E-06 3.9E-11 78.3 13.3 45 221-277 166-210 (253)
211 cd03269 ABC_putative_ATPase Th 98.5 1.1E-06 2.5E-11 77.2 11.5 27 122-148 22-48 (210)
212 PF05621 TniB: Bacterial TniB 98.5 1.7E-06 3.6E-11 79.1 12.6 124 128-273 63-187 (302)
213 PRK10070 glycine betaine trans 98.5 1.1E-06 2.4E-11 84.6 12.2 45 221-277 182-226 (400)
214 PRK09493 glnQ glutamine ABC tr 98.5 1.1E-06 2.3E-11 79.1 11.3 28 122-149 23-50 (240)
215 PRK10418 nikD nickel transport 98.5 3E-06 6.5E-11 76.9 14.4 46 220-277 157-202 (254)
216 cd03226 ABC_cobalt_CbiO_domain 98.5 1.1E-07 2.3E-12 83.5 4.7 27 122-148 22-48 (205)
217 PRK13547 hmuV hemin importer A 98.5 8.1E-07 1.8E-11 81.5 10.7 60 220-309 171-230 (272)
218 cd03369 ABCC_NFT1 Domain 2 of 98.5 3.7E-07 8.1E-12 80.2 8.1 28 122-149 30-57 (207)
219 TIGR03771 anch_rpt_ABC anchore 98.5 2.3E-06 5E-11 76.1 13.3 26 123-148 3-28 (223)
220 TIGR03005 ectoine_ehuA ectoine 98.5 1.1E-06 2.3E-11 79.7 11.3 59 221-309 164-222 (252)
221 PRK13645 cbiO cobalt transport 98.5 5E-07 1.1E-11 83.6 9.3 45 221-277 168-212 (289)
222 PRK11614 livF leucine/isoleuci 98.5 7.8E-07 1.7E-11 79.9 10.2 28 121-148 26-53 (237)
223 cd03295 ABC_OpuCA_Osmoprotecti 98.5 1.3E-06 2.9E-11 78.6 11.7 59 221-309 153-211 (242)
224 TIGR02982 heterocyst_DevA ABC 98.5 1.7E-06 3.6E-11 76.8 12.1 44 221-276 159-202 (220)
225 PRK13643 cbiO cobalt transport 98.5 5.1E-07 1.1E-11 83.6 9.1 28 121-148 27-54 (288)
226 PRK13631 cbiO cobalt transport 98.5 7.6E-07 1.6E-11 83.5 10.3 28 121-148 47-74 (320)
227 PRK09473 oppD oligopeptide tra 98.5 6.8E-07 1.5E-11 84.2 10.0 44 221-276 179-222 (330)
228 PRK10895 lipopolysaccharide AB 98.5 1.1E-06 2.3E-11 79.2 10.8 28 122-149 25-52 (241)
229 TIGR00968 3a0106s01 sulfate AB 98.5 1.6E-07 3.5E-12 84.4 5.5 59 221-309 148-206 (237)
230 cd03250 ABCC_MRP_domain1 Domai 98.5 2.3E-07 4.9E-12 81.4 6.1 28 122-149 27-54 (204)
231 TIGR03415 ABC_choXWV_ATP choli 98.5 1.2E-06 2.6E-11 83.8 11.4 46 220-277 181-226 (382)
232 TIGR03522 GldA_ABC_ATP gliding 98.5 1.8E-06 4E-11 80.4 12.4 27 122-148 24-50 (301)
233 COG1134 TagH ABC-type polysacc 98.5 8.3E-07 1.8E-11 78.1 9.3 154 122-310 49-223 (249)
234 PRK15112 antimicrobial peptide 98.5 7.9E-07 1.7E-11 81.4 9.7 45 221-277 167-211 (267)
235 cd03231 ABC_CcmA_heme_exporter 98.5 1.9E-06 4E-11 75.4 11.7 27 122-148 22-48 (201)
236 cd03299 ABC_ModC_like Archeal 98.5 1.4E-07 2.9E-12 84.7 4.5 59 221-309 147-205 (235)
237 COG2274 SunT ABC-type bacterio 98.5 5.8E-07 1.3E-11 92.1 9.5 133 122-277 495-669 (709)
238 PRK13641 cbiO cobalt transport 98.5 8.6E-07 1.9E-11 82.0 9.9 27 122-148 29-55 (287)
239 cd03244 ABCC_MRP_domain2 Domai 98.5 6.9E-07 1.5E-11 79.2 8.9 28 122-149 26-53 (221)
240 PRK13538 cytochrome c biogenes 98.5 1.8E-06 3.9E-11 75.7 11.3 27 122-148 23-49 (204)
241 cd03233 ABC_PDR_domain1 The pl 98.5 1.6E-06 3.5E-11 75.9 11.0 28 122-149 29-56 (202)
242 TIGR02324 CP_lyasePhnL phospho 98.5 5E-06 1.1E-10 73.9 14.2 27 122-148 30-56 (224)
243 PRK13539 cytochrome c biogenes 98.5 2E-06 4.3E-11 75.6 11.4 27 122-148 24-50 (207)
244 PRK10762 D-ribose transporter 98.5 1.6E-06 3.4E-11 86.6 12.1 27 122-148 26-52 (501)
245 cd03297 ABC_ModC_molybdenum_tr 98.5 1.6E-06 3.4E-11 76.6 10.8 45 221-277 149-193 (214)
246 TIGR02770 nickel_nikD nickel i 98.5 6.1E-06 1.3E-10 73.7 14.6 59 221-309 143-201 (230)
247 PRK10619 histidine/lysine/argi 98.4 2.5E-06 5.5E-11 77.5 12.3 27 122-148 27-53 (257)
248 TIGR03873 F420-0_ABC_ATP propo 98.4 2.6E-06 5.7E-11 77.4 12.4 27 122-148 23-49 (256)
249 cd03263 ABC_subfamily_A The AB 98.4 2.6E-06 5.6E-11 75.5 12.0 27 122-148 24-50 (220)
250 cd03267 ABC_NatA_like Similar 98.4 1.3E-06 2.7E-11 78.5 10.0 59 221-309 171-229 (236)
251 cd03300 ABC_PotA_N PotA is an 98.4 3.9E-07 8.5E-12 81.5 6.7 59 221-309 148-206 (232)
252 COG4152 ABC-type uncharacteriz 98.4 9.9E-07 2.1E-11 77.5 8.8 41 122-168 24-64 (300)
253 PRK09700 D-allose transporter 98.4 2.4E-06 5.1E-11 85.5 13.0 58 221-309 427-484 (510)
254 PRK03695 vitamin B12-transport 98.4 2.8E-06 6.1E-11 76.8 12.3 27 122-148 18-44 (248)
255 TIGR02868 CydC thiol reductant 98.4 7.3E-07 1.6E-11 89.6 9.2 128 122-274 357-527 (529)
256 PRK15439 autoinducer 2 ABC tra 98.4 2.3E-06 4.9E-11 85.6 12.6 27 122-148 33-59 (510)
257 PRK11022 dppD dipeptide transp 98.4 9.2E-07 2E-11 83.2 9.2 44 221-276 171-214 (326)
258 TIGR01189 ccmA heme ABC export 98.4 2.3E-06 4.9E-11 74.7 11.0 27 122-148 22-48 (198)
259 TIGR02769 nickel_nikE nickel i 98.4 2.6E-06 5.6E-11 77.8 11.9 59 221-309 168-226 (265)
260 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.4 9.6E-07 2.1E-11 78.6 8.7 27 122-148 44-70 (224)
261 PRK13543 cytochrome c biogenes 98.4 2.9E-07 6.3E-12 81.4 5.3 27 122-148 33-59 (214)
262 cd03257 ABC_NikE_OppD_transpor 98.4 2E-06 4.3E-11 76.6 10.8 59 221-309 163-221 (228)
263 PRK10419 nikE nickel transport 98.4 4.6E-06 1E-10 76.4 13.2 60 220-309 168-227 (268)
264 PRK10938 putative molybdenum t 98.4 2.4E-06 5.3E-11 85.0 12.3 27 122-148 25-51 (490)
265 TIGR03740 galliderm_ABC gallid 98.4 5E-06 1.1E-10 73.9 13.1 27 122-148 22-48 (223)
266 PRK13649 cbiO cobalt transport 98.4 5.2E-07 1.1E-11 83.1 7.0 28 121-148 28-55 (280)
267 PRK14249 phosphate ABC transpo 98.4 1.1E-06 2.3E-11 79.7 9.0 27 122-148 26-52 (251)
268 PRK10261 glutathione transport 98.4 2.6E-06 5.6E-11 87.2 12.7 45 221-277 481-525 (623)
269 TIGR03411 urea_trans_UrtD urea 98.4 3E-06 6.4E-11 76.3 11.7 28 122-149 24-51 (242)
270 cd03252 ABCC_Hemolysin The ABC 98.4 1.4E-06 2.9E-11 78.3 9.4 28 122-149 24-51 (237)
271 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.4 6.2E-06 1.4E-10 68.2 12.6 107 122-277 22-128 (144)
272 PRK11701 phnK phosphonate C-P 98.4 3.2E-06 6.9E-11 76.9 11.9 45 221-277 169-213 (258)
273 PRK11264 putative amino-acid A 98.4 3.1E-06 6.8E-11 76.6 11.8 27 122-148 25-51 (250)
274 TIGR01978 sufC FeS assembly AT 98.4 5.6E-06 1.2E-10 74.5 13.4 28 122-149 22-49 (243)
275 PRK11176 lipid transporter ATP 98.4 1.7E-06 3.7E-11 88.0 11.1 132 122-276 365-539 (582)
276 PRK11124 artP arginine transpo 98.4 3.3E-06 7.2E-11 76.0 11.8 27 122-148 24-50 (242)
277 PRK10261 glutathione transport 98.4 5.5E-06 1.2E-10 84.8 14.6 45 221-277 186-230 (623)
278 cd03264 ABC_drug_resistance_li 98.4 5.3E-06 1.1E-10 73.0 12.7 26 122-148 22-47 (211)
279 cd03253 ABCC_ATM1_transporter 98.4 1.3E-06 2.9E-11 78.3 8.9 28 122-149 23-50 (236)
280 PRK15056 manganese/iron transp 98.4 5.3E-06 1.1E-10 76.1 13.1 27 122-148 29-55 (272)
281 cd03236 ABC_RNaseL_inhibitor_d 98.4 5.4E-06 1.2E-10 75.3 12.8 34 114-149 16-49 (255)
282 PRK10982 galactose/methyl gala 98.4 3.3E-06 7.2E-11 84.1 12.3 27 122-148 20-46 (491)
283 cd03251 ABCC_MsbA MsbA is an e 98.4 1.5E-06 3.3E-11 77.8 9.0 28 122-149 24-51 (234)
284 COG1129 MglA ABC-type sugar tr 98.4 1.7E-06 3.8E-11 84.2 9.8 142 111-277 20-206 (500)
285 PF00004 AAA: ATPase family as 98.4 3.7E-06 8E-11 67.7 10.4 111 129-277 1-113 (132)
286 PRK14271 phosphate ABC transpo 98.4 3.7E-06 8E-11 77.3 11.6 27 122-148 43-69 (276)
287 PRK11231 fecE iron-dicitrate t 98.4 2.5E-06 5.5E-11 77.4 10.3 27 122-148 24-50 (255)
288 PRK13549 xylose transporter AT 98.4 2.8E-06 6E-11 84.9 11.4 27 122-148 27-53 (506)
289 PRK11174 cysteine/glutathione 98.4 1.4E-06 3E-11 88.7 9.4 131 122-276 372-544 (588)
290 cd03283 ABC_MutS-like MutS-lik 98.4 7.6E-06 1.6E-10 71.5 12.7 28 123-150 22-49 (199)
291 cd03245 ABCC_bacteriocin_expor 98.4 6.8E-07 1.5E-11 79.3 6.2 27 122-148 26-52 (220)
292 TIGR03269 met_CoM_red_A2 methy 98.4 8E-06 1.7E-10 81.9 14.6 45 221-277 186-230 (520)
293 PRK11288 araG L-arabinose tran 98.4 3.1E-06 6.8E-11 84.4 11.6 28 121-148 25-52 (501)
294 cd03254 ABCC_Glucan_exporter_l 98.4 1.2E-06 2.7E-11 78.1 7.8 28 122-149 25-52 (229)
295 PRK12724 flagellar biosynthesi 98.4 2.6E-05 5.6E-10 74.8 17.0 89 122-232 219-310 (432)
296 PRK09700 D-allose transporter 98.4 2.4E-06 5.3E-11 85.4 10.7 27 122-148 27-53 (510)
297 COG4559 ABC-type hemin transpo 98.3 1.2E-05 2.6E-10 69.4 13.0 42 122-169 23-64 (259)
298 cd03260 ABC_PstB_phosphate_tra 98.3 4.3E-06 9.2E-11 74.5 10.8 29 122-150 22-50 (227)
299 PRK13541 cytochrome c biogenes 98.3 7.2E-07 1.6E-11 77.6 5.7 27 122-148 22-48 (195)
300 TIGR02633 xylG D-xylose ABC tr 98.3 4.2E-06 9.2E-11 83.5 11.9 58 221-309 421-478 (500)
301 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.3 2E-06 4.4E-11 77.2 8.7 28 122-149 25-52 (238)
302 COG4988 CydD ABC-type transpor 98.3 5E-06 1.1E-10 81.5 11.9 130 122-276 343-515 (559)
303 PRK15093 antimicrobial peptide 98.3 6.7E-06 1.4E-10 77.6 12.5 44 221-276 176-219 (330)
304 TIGR00972 3a0107s01c2 phosphat 98.3 7.1E-06 1.5E-10 74.1 12.0 27 122-148 23-49 (247)
305 PRK09580 sufC cysteine desulfu 98.3 4.8E-06 1E-10 75.2 10.7 29 121-149 22-50 (248)
306 TIGR03797 NHPM_micro_ABC2 NHPM 98.3 1.5E-06 3.3E-11 90.0 8.4 28 122-149 475-502 (686)
307 cd03290 ABCC_SUR1_N The SUR do 98.3 1.5E-06 3.4E-11 76.9 7.3 28 122-149 23-50 (218)
308 PRK14269 phosphate ABC transpo 98.3 1.8E-06 3.8E-11 78.0 7.7 28 122-149 24-51 (246)
309 COG4615 PvdE ABC-type sideroph 98.3 4.3E-06 9.2E-11 78.2 10.1 26 122-147 345-370 (546)
310 TIGR02203 MsbA_lipidA lipid A 98.3 3.6E-06 7.8E-11 85.4 10.8 28 122-149 354-381 (571)
311 PRK10790 putative multidrug tr 98.3 1.8E-06 3.9E-11 88.0 8.6 27 122-148 363-389 (592)
312 PRK14235 phosphate transporter 98.3 1.5E-06 3.3E-11 79.5 7.2 29 122-150 41-69 (267)
313 PRK10762 D-ribose transporter 98.3 4.9E-06 1.1E-10 83.0 11.5 58 221-309 413-470 (501)
314 PRK13409 putative ATPase RIL; 98.3 8.7E-06 1.9E-10 82.5 13.3 46 220-277 470-515 (590)
315 PRK15064 ABC transporter ATP-b 98.3 1.5E-05 3.3E-10 80.1 15.0 27 122-148 23-49 (530)
316 PRK14240 phosphate transporter 98.3 1.6E-06 3.5E-11 78.5 7.1 28 122-149 25-52 (250)
317 TIGR03269 met_CoM_red_A2 methy 98.3 7.9E-06 1.7E-10 82.0 12.7 59 221-309 445-503 (520)
318 TIGR02858 spore_III_AA stage I 98.3 7.8E-06 1.7E-10 74.6 11.5 146 127-311 112-259 (270)
319 PRK14273 phosphate ABC transpo 98.3 2.2E-06 4.8E-11 77.7 7.8 27 122-148 29-55 (254)
320 cd03289 ABCC_CFTR2 The CFTR su 98.3 3.9E-06 8.5E-11 77.0 9.5 29 122-150 26-54 (275)
321 COG4181 Predicted ABC-type tra 98.3 1.1E-06 2.5E-11 73.1 5.2 43 221-275 164-206 (228)
322 CHL00131 ycf16 sulfate ABC tra 98.3 1.5E-05 3.3E-10 72.1 13.2 27 122-148 29-55 (252)
323 TIGR02633 xylG D-xylose ABC tr 98.3 5.2E-06 1.1E-10 82.9 11.1 27 122-148 23-49 (500)
324 PRK14253 phosphate ABC transpo 98.3 7.3E-06 1.6E-10 74.1 11.1 28 122-149 25-52 (249)
325 PRK15134 microcin C ABC transp 98.3 7.6E-06 1.6E-10 82.3 12.2 59 221-309 443-501 (529)
326 PRK11288 araG L-arabinose tran 98.3 5.9E-06 1.3E-10 82.5 11.3 27 122-148 275-301 (501)
327 TIGR02857 CydD thiol reductant 98.3 3.7E-06 8.1E-11 84.5 9.7 27 122-148 344-370 (529)
328 TIGR03796 NHPM_micro_ABC1 NHPM 98.3 2.6E-06 5.7E-11 88.6 8.9 28 122-149 501-528 (710)
329 PRK14270 phosphate ABC transpo 98.3 2.5E-06 5.5E-11 77.2 7.7 28 122-149 26-53 (251)
330 TIGR03375 type_I_sec_LssB type 98.3 2.5E-06 5.3E-11 88.6 8.6 27 122-148 487-513 (694)
331 PRK13549 xylose transporter AT 98.3 5.9E-06 1.3E-10 82.6 11.0 27 122-148 284-310 (506)
332 COG4167 SapF ABC-type antimicr 98.3 2.4E-05 5.1E-10 66.0 12.6 60 221-310 167-226 (267)
333 PRK14274 phosphate ABC transpo 98.3 2.8E-06 6.2E-11 77.3 7.9 28 122-149 34-61 (259)
334 cd03115 SRP The signal recogni 98.3 2.7E-05 5.8E-10 66.3 13.4 90 128-233 2-94 (173)
335 PRK15134 microcin C ABC transp 98.3 2.2E-05 4.7E-10 79.0 14.8 46 220-277 173-218 (529)
336 TIGR02204 MsbA_rel ABC transpo 98.3 4.7E-06 1E-10 84.6 10.1 29 122-150 362-390 (576)
337 PRK14267 phosphate ABC transpo 98.2 1.3E-05 2.8E-10 72.7 11.9 28 122-149 26-53 (253)
338 TIGR01193 bacteriocin_ABC ABC- 98.2 2.7E-06 5.8E-11 88.5 8.5 27 122-148 496-522 (708)
339 PRK10982 galactose/methyl gala 98.2 1.2E-05 2.5E-10 80.2 12.6 58 221-309 409-466 (491)
340 cd03248 ABCC_TAP TAP, the Tran 98.2 6.7E-06 1.4E-10 73.2 9.6 28 122-149 36-63 (226)
341 PRK14259 phosphate ABC transpo 98.2 3.8E-06 8.2E-11 77.0 8.2 28 122-149 35-62 (269)
342 cd03234 ABCG_White The White s 98.2 2.6E-05 5.6E-10 69.5 13.4 28 122-149 29-56 (226)
343 PRK10636 putative ABC transpor 98.2 3.1E-05 6.6E-10 79.5 15.6 27 122-148 23-49 (638)
344 PRK13657 cyclic beta-1,2-gluca 98.2 3.9E-06 8.4E-11 85.5 9.0 27 122-148 357-383 (588)
345 cd03270 ABC_UvrA_I The excisio 98.2 2.7E-05 5.9E-10 69.4 13.4 43 222-277 158-200 (226)
346 PRK10744 pstB phosphate transp 98.2 6.3E-06 1.4E-10 75.1 9.5 28 122-149 35-62 (260)
347 COG4618 ArpD ABC-type protease 98.2 7.9E-06 1.7E-10 78.7 10.3 133 122-276 358-532 (580)
348 PRK15439 autoinducer 2 ABC tra 98.2 1.1E-05 2.3E-10 80.8 11.9 58 221-309 421-478 (510)
349 PRK13546 teichoic acids export 98.2 3E-05 6.5E-10 70.8 13.6 27 122-148 46-72 (264)
350 PRK14258 phosphate ABC transpo 98.2 1E-05 2.3E-10 73.7 10.6 59 221-309 168-226 (261)
351 PRK14247 phosphate ABC transpo 98.2 1.3E-05 2.8E-10 72.6 11.1 28 122-149 25-52 (250)
352 PRK13545 tagH teichoic acids e 98.2 2.8E-05 6E-10 76.8 14.0 28 121-148 45-72 (549)
353 cd00009 AAA The AAA+ (ATPases 98.2 1.7E-05 3.7E-10 64.4 10.6 41 125-171 18-58 (151)
354 PRK10522 multidrug transporter 98.2 1.6E-05 3.4E-10 80.3 12.4 27 122-148 345-371 (547)
355 PRK14261 phosphate ABC transpo 98.2 4.2E-06 9.1E-11 75.9 7.3 27 122-148 28-54 (253)
356 PRK10789 putative multidrug tr 98.2 7.1E-06 1.5E-10 83.2 9.6 28 122-149 337-364 (569)
357 PRK12726 flagellar biosynthesi 98.2 0.0001 2.2E-09 69.8 16.4 144 67-233 151-297 (407)
358 TIGR01842 type_I_sec_PrtD type 98.2 7.9E-06 1.7E-10 82.4 9.8 28 122-149 340-367 (544)
359 PRK11819 putative ABC transpor 98.2 4.9E-05 1.1E-09 76.9 15.4 46 122-169 29-78 (556)
360 PRK14242 phosphate transporter 98.2 1.7E-05 3.6E-10 71.9 10.9 28 122-149 28-55 (253)
361 TIGR00958 3a01208 Conjugate Tr 98.2 5.6E-06 1.2E-10 86.1 8.8 28 122-149 503-530 (711)
362 PRK13409 putative ATPase RIL; 98.2 2.2E-05 4.9E-10 79.6 12.8 27 122-148 95-121 (590)
363 PRK11160 cysteine/glutathione 98.2 7.9E-06 1.7E-10 82.9 9.6 28 122-149 362-389 (574)
364 KOG0058 Peptide exporter, ABC 98.2 1.4E-05 3E-10 80.2 10.9 41 122-169 490-530 (716)
365 COG1245 Predicted ATPase, RNas 98.2 2.7E-05 5.8E-10 74.3 12.1 139 120-274 361-514 (591)
366 PRK14256 phosphate ABC transpo 98.2 5.5E-06 1.2E-10 75.0 7.5 28 122-149 26-53 (252)
367 PTZ00265 multidrug resistance 98.2 8.2E-06 1.8E-10 90.6 10.2 30 122-151 1190-1219(1466)
368 PRK10938 putative molybdenum t 98.2 1.7E-05 3.8E-10 78.9 11.7 27 122-148 282-308 (490)
369 PRK14263 phosphate ABC transpo 98.2 2.6E-05 5.7E-10 71.1 11.9 27 122-148 30-56 (261)
370 PRK14266 phosphate ABC transpo 98.2 7.8E-06 1.7E-10 74.0 8.4 28 122-149 25-52 (250)
371 PRK14239 phosphate transporter 98.2 5.9E-06 1.3E-10 74.8 7.6 28 122-149 27-54 (252)
372 PRK14238 phosphate transporter 98.2 6.2E-06 1.3E-10 75.6 7.7 29 122-150 46-74 (271)
373 PRK14268 phosphate ABC transpo 98.1 2.2E-05 4.8E-10 71.4 11.2 27 122-148 34-60 (258)
374 TIGR01192 chvA glucan exporter 98.1 8.2E-06 1.8E-10 83.0 9.2 27 122-148 357-383 (585)
375 TIGR01257 rim_protein retinal- 98.1 1.7E-05 3.7E-10 89.5 12.2 29 121-149 1960-1988(2272)
376 PRK14265 phosphate ABC transpo 98.1 3.3E-05 7.1E-10 70.9 12.2 28 122-149 42-69 (274)
377 PRK14245 phosphate ABC transpo 98.1 6.7E-06 1.5E-10 74.4 7.5 27 122-148 25-51 (250)
378 COG0488 Uup ATPase components 98.1 3.2E-05 6.9E-10 77.0 12.8 133 121-277 343-497 (530)
379 PTZ00265 multidrug resistance 98.1 1.5E-05 3.2E-10 88.6 11.6 28 122-149 407-434 (1466)
380 cd03243 ABC_MutS_homologs The 98.1 4.4E-06 9.5E-11 73.1 6.0 27 125-151 28-54 (202)
381 cd03288 ABCC_SUR2 The SUR doma 98.1 4.9E-06 1.1E-10 75.7 6.5 28 122-149 43-70 (257)
382 PRK14237 phosphate transporter 98.1 7.8E-06 1.7E-10 74.8 7.8 28 122-149 42-69 (267)
383 cd03272 ABC_SMC3_euk Eukaryoti 98.1 0.00018 3.8E-09 64.7 16.6 60 220-312 179-238 (243)
384 COG4987 CydC ABC-type transpor 98.1 1.1E-05 2.3E-10 78.3 9.0 135 122-277 360-534 (573)
385 PF00448 SRP54: SRP54-type pro 98.1 5.8E-05 1.2E-09 65.7 12.8 91 127-233 2-95 (196)
386 PRK14251 phosphate ABC transpo 98.1 1.1E-05 2.4E-10 73.1 8.5 28 122-149 26-53 (251)
387 PRK14974 cell division protein 98.1 0.0005 1.1E-08 64.7 19.7 92 126-233 140-234 (336)
388 PRK14264 phosphate ABC transpo 98.1 8.2E-06 1.8E-10 76.1 7.7 28 122-149 67-94 (305)
389 COG4136 ABC-type uncharacteriz 98.1 5.8E-05 1.3E-09 61.7 11.4 30 122-151 24-53 (213)
390 PRK14272 phosphate ABC transpo 98.1 4.8E-06 1E-10 75.4 5.9 28 122-149 26-53 (252)
391 PRK14246 phosphate ABC transpo 98.1 9.4E-06 2E-10 73.8 7.8 28 122-149 32-59 (257)
392 TIGR01846 type_I_sec_HlyB type 98.1 1.2E-05 2.7E-10 83.4 9.7 28 122-149 479-506 (694)
393 PRK10636 putative ABC transpor 98.1 3.4E-05 7.4E-10 79.2 12.8 46 122-169 334-383 (638)
394 PRK14262 phosphate ABC transpo 98.1 8.2E-06 1.8E-10 73.8 7.3 28 121-148 24-51 (250)
395 PRK11147 ABC transporter ATPas 98.1 9.9E-05 2.2E-09 75.8 16.1 27 122-148 25-51 (635)
396 PLN03130 ABC transporter C fam 98.1 1.1E-05 2.3E-10 90.6 9.6 131 122-276 1261-1433(1622)
397 PRK14248 phosphate ABC transpo 98.1 1E-05 2.2E-10 74.1 7.9 28 122-149 43-70 (268)
398 PRK14243 phosphate transporter 98.1 1E-05 2.2E-10 73.9 7.8 28 122-149 32-59 (264)
399 COG1132 MdlB ABC-type multidru 98.1 2E-05 4.3E-10 79.9 10.8 132 122-276 351-524 (567)
400 PRK14275 phosphate ABC transpo 98.1 5.3E-05 1.1E-09 70.0 12.7 28 122-149 61-88 (286)
401 cd03291 ABCC_CFTR1 The CFTR su 98.1 7.2E-06 1.6E-10 75.5 6.9 27 122-148 59-85 (282)
402 PRK14252 phosphate ABC transpo 98.1 3.7E-05 8.1E-10 70.2 11.5 28 122-149 38-65 (265)
403 PRK14236 phosphate transporter 98.1 3E-05 6.6E-10 71.1 11.0 28 122-149 47-74 (272)
404 PTZ00454 26S protease regulato 98.1 1.9E-05 4.2E-10 76.1 10.0 121 121-277 174-295 (398)
405 PRK14260 phosphate ABC transpo 98.1 1.1E-05 2.3E-10 73.5 7.9 28 122-149 29-56 (259)
406 TIGR03719 ABC_ABC_ChvD ATP-bin 98.1 8.7E-05 1.9E-09 75.0 15.2 28 121-148 26-53 (552)
407 KOG0061 Transporter, ABC super 98.1 1.5E-05 3.2E-10 81.2 9.6 32 120-151 50-81 (613)
408 PLN03073 ABC transporter F fam 98.1 5.5E-05 1.2E-09 78.4 13.8 43 122-169 199-243 (718)
409 cd03278 ABC_SMC_barmotin Barmo 98.1 7.1E-05 1.5E-09 65.3 12.6 26 123-149 20-45 (197)
410 PRK11147 ABC transporter ATPas 98.1 4.5E-05 9.8E-10 78.3 13.2 27 122-148 341-367 (635)
411 PRK14254 phosphate ABC transpo 98.1 2.1E-05 4.5E-10 72.7 9.7 28 122-149 61-88 (285)
412 PRK14241 phosphate transporter 98.1 4.2E-05 9.2E-10 69.5 11.6 28 122-149 26-53 (258)
413 COG4161 ArtP ABC-type arginine 98.1 3.5E-05 7.6E-10 63.7 9.7 135 122-276 24-201 (242)
414 KOG0057 Mitochondrial Fe/S clu 98.1 2.2E-05 4.7E-10 76.4 9.8 131 121-276 373-546 (591)
415 PRK15064 ABC transporter ATP-b 98.1 5.2E-05 1.1E-09 76.3 13.2 27 122-148 341-367 (530)
416 PLN03232 ABC transporter C fam 98.1 1.3E-05 2.7E-10 89.6 9.5 131 122-276 1258-1430(1495)
417 PRK10867 signal recognition pa 98.1 0.00024 5.2E-09 69.1 17.1 91 126-233 100-195 (433)
418 PRK14244 phosphate ABC transpo 98.1 3.7E-05 8E-10 69.6 10.9 29 122-150 27-55 (251)
419 PRK14257 phosphate ABC transpo 98.1 1.1E-05 2.5E-10 75.9 7.7 28 122-149 104-131 (329)
420 PTZ00243 ABC transporter; Prov 98.1 7.5E-06 1.6E-10 91.5 7.5 41 122-169 1332-1372(1560)
421 PRK05703 flhF flagellar biosyn 98.1 0.00026 5.6E-09 68.9 17.3 88 125-233 220-311 (424)
422 cd03227 ABC_Class2 ABC-type Cl 98.1 4.7E-05 1E-09 64.2 10.7 27 126-152 21-47 (162)
423 PLN03073 ABC transporter F fam 98.1 6.9E-05 1.5E-09 77.6 14.0 27 122-148 531-557 (718)
424 PF09807 DUF2348: Uncharacteri 98.1 0.00021 4.4E-09 64.6 15.4 174 112-309 2-210 (249)
425 TIGR01187 potA spermidine/putr 98.1 5.1E-06 1.1E-10 78.2 5.2 44 221-276 118-161 (325)
426 COG0396 sufC Cysteine desulfur 98.0 5.6E-05 1.2E-09 66.0 11.1 28 122-149 26-53 (251)
427 KOG0736 Peroxisome assembly fa 98.0 0.00015 3.3E-09 73.1 15.5 202 35-277 593-820 (953)
428 TIGR01194 cyc_pep_trnsptr cycl 98.0 5.8E-05 1.3E-09 76.4 13.0 27 122-148 364-390 (555)
429 TIGR00064 ftsY signal recognit 98.0 9.4E-05 2E-09 67.7 13.2 93 125-233 71-166 (272)
430 TIGR00954 3a01203 Peroxysomal 98.0 6.8E-05 1.5E-09 77.3 13.7 27 122-148 474-500 (659)
431 PRK14722 flhF flagellar biosyn 98.0 0.00069 1.5E-08 64.5 19.2 62 122-188 133-197 (374)
432 KOG0055 Multidrug/pheromone ex 98.0 3.7E-05 8.1E-10 81.6 11.6 71 122-200 375-452 (1228)
433 TIGR01425 SRP54_euk signal rec 98.0 0.0003 6.4E-09 68.1 16.9 39 126-170 100-138 (429)
434 COG0488 Uup ATPase components 98.0 6.3E-05 1.4E-09 74.9 12.6 51 122-174 25-79 (530)
435 PRK15177 Vi polysaccharide exp 98.0 1E-05 2.3E-10 71.4 6.3 27 122-148 9-35 (213)
436 cd03280 ABC_MutS2 MutS2 homolo 98.0 1.1E-05 2.4E-10 70.5 6.4 27 124-150 25-52 (200)
437 PRK10416 signal recognition pa 98.0 9.3E-05 2E-09 69.3 12.9 94 124-233 112-208 (318)
438 COG4172 ABC-type uncharacteriz 98.0 9.2E-05 2E-09 69.7 12.5 43 220-274 174-216 (534)
439 COG4525 TauB ABC-type taurine 98.0 0.00015 3.3E-09 61.9 12.7 27 121-147 26-52 (259)
440 COG3854 SpoIIIAA ncharacterize 98.0 3.6E-05 7.8E-10 67.2 9.0 161 123-324 133-296 (308)
441 COG4133 CcmA ABC-type transpor 98.0 2.5E-05 5.4E-10 66.2 7.7 41 123-170 25-65 (209)
442 TIGR03689 pup_AAA proteasome A 98.0 4.5E-05 9.7E-10 75.4 10.6 129 122-273 212-340 (512)
443 TIGR00957 MRP_assoc_pro multi 98.0 2.1E-05 4.5E-10 88.1 9.2 42 122-170 1308-1349(1522)
444 PRK14255 phosphate ABC transpo 98.0 0.00018 3.9E-09 65.1 13.8 27 122-148 27-53 (252)
445 TIGR00959 ffh signal recogniti 98.0 0.0005 1.1E-08 66.8 17.6 92 127-233 100-194 (428)
446 COG4178 ABC-type uncharacteriz 98.0 9.5E-05 2.1E-09 73.7 12.7 56 122-179 415-474 (604)
447 COG1222 RPT1 ATP-dependent 26S 98.0 3.8E-05 8.3E-10 71.1 9.2 128 108-274 169-298 (406)
448 PRK12727 flagellar biosynthesi 98.0 0.00078 1.7E-08 66.5 18.5 45 122-170 346-390 (559)
449 PF13173 AAA_14: AAA domain 97.9 7E-05 1.5E-09 60.5 9.4 39 126-171 2-40 (128)
450 PTZ00361 26 proteosome regulat 97.9 6.4E-05 1.4E-09 73.1 10.7 119 122-276 213-332 (438)
451 COG2401 ABC-type ATPase fused 97.9 4.7E-05 1E-09 71.8 9.3 45 220-276 524-568 (593)
452 KOG0744 AAA+-type ATPase [Post 97.9 3.4E-05 7.4E-10 70.5 8.0 134 123-279 174-310 (423)
453 PF00931 NB-ARC: NB-ARC domain 97.9 7.9E-05 1.7E-09 68.6 10.8 122 124-276 17-139 (287)
454 PRK00771 signal recognition pa 97.9 0.00065 1.4E-08 66.2 17.5 55 125-186 94-151 (437)
455 cd01131 PilT Pilus retraction 97.9 7.8E-05 1.7E-09 65.1 9.9 24 128-151 3-26 (198)
456 cd03271 ABC_UvrA_II The excisi 97.9 0.00014 2.9E-09 66.2 11.7 26 122-147 17-42 (261)
457 TIGR01271 CFTR_protein cystic 97.9 2.6E-05 5.6E-10 87.1 8.5 130 122-276 1241-1412(1490)
458 PLN03211 ABC transporter G-25; 97.9 1.7E-05 3.7E-10 81.5 6.5 30 120-149 88-117 (659)
459 PRK07721 fliI flagellum-specif 97.9 0.00016 3.4E-09 70.4 12.7 157 106-277 140-317 (438)
460 TIGR03719 ABC_ABC_ChvD ATP-bin 97.9 0.00017 3.6E-09 73.0 13.4 27 122-148 344-370 (552)
461 cd03287 ABC_MSH3_euk MutS3 hom 97.9 0.00012 2.7E-09 64.8 10.9 30 123-152 28-57 (222)
462 TIGR03015 pepcterm_ATPase puta 97.9 0.00016 3.4E-09 66.0 11.8 95 122-233 38-135 (269)
463 KOG0056 Heavy metal exporter H 97.9 0.0002 4.3E-09 69.0 12.4 135 122-277 560-735 (790)
464 TIGR03499 FlhF flagellar biosy 97.9 8.7E-05 1.9E-09 68.4 9.8 88 124-230 192-281 (282)
465 PRK06921 hypothetical protein; 97.9 0.00013 2.8E-09 66.7 10.8 38 126-169 117-155 (266)
466 PRK11819 putative ABC transpor 97.9 0.0002 4.2E-09 72.5 13.1 27 122-148 346-372 (556)
467 TIGR01257 rim_protein retinal- 97.9 6.6E-05 1.4E-09 84.9 10.4 27 122-148 952-978 (2272)
468 PRK12377 putative replication 97.9 7.8E-05 1.7E-09 67.2 9.1 37 127-169 102-138 (248)
469 PRK10535 macrolide transporter 97.9 1.5E-05 3.3E-10 81.9 5.0 28 122-149 30-57 (648)
470 PRK07952 DNA replication prote 97.9 8.5E-05 1.8E-09 66.8 9.1 36 127-168 100-135 (244)
471 PRK08727 hypothetical protein; 97.9 7.6E-05 1.6E-09 66.9 8.8 38 126-169 41-78 (233)
472 cd03275 ABC_SMC1_euk Eukaryoti 97.9 0.0011 2.5E-08 59.8 16.6 59 221-311 177-235 (247)
473 COG2087 CobU Adenosyl cobinami 97.8 0.00043 9.3E-09 57.5 12.2 127 128-278 2-133 (175)
474 PRK08181 transposase; Validate 97.8 9.3E-05 2E-09 67.5 9.3 40 123-168 103-142 (269)
475 cd03282 ABC_MSH4_euk MutS4 hom 97.8 8.9E-05 1.9E-09 65.0 8.7 31 122-152 25-55 (204)
476 PF05625 PAXNEB: PAXNEB protei 97.8 0.00024 5.2E-09 67.7 12.0 106 206-325 179-304 (363)
477 PF02283 CobU: Cobinamide kina 97.8 6.7E-05 1.5E-09 63.5 7.3 122 129-277 1-126 (167)
478 COG1119 ModF ABC-type molybden 97.8 0.00038 8.2E-09 61.6 12.1 26 122-147 53-78 (257)
479 PF01695 IstB_IS21: IstB-like 97.8 0.00011 2.4E-09 62.9 8.7 40 124-169 45-84 (178)
480 COG1101 PhnK ABC-type uncharac 97.8 0.00013 2.9E-09 63.1 9.0 42 122-170 28-69 (263)
481 TIGR00955 3a01204 The Eye Pigm 97.8 0.00017 3.7E-09 73.8 11.5 34 115-149 41-74 (617)
482 PRK06793 fliI flagellum-specif 97.8 9.2E-05 2E-09 71.6 8.9 116 106-235 138-260 (432)
483 PRK08084 DNA replication initi 97.8 0.00013 2.8E-09 65.5 9.3 38 126-169 45-82 (235)
484 PRK11889 flhF flagellar biosyn 97.8 0.00043 9.4E-09 65.9 13.1 90 126-234 241-333 (436)
485 KOG0727 26S proteasome regulat 97.8 0.00016 3.5E-09 64.0 9.5 120 122-277 185-305 (408)
486 cd03279 ABC_sbcCD SbcCD and ot 97.8 7.7E-05 1.7E-09 65.8 7.7 24 124-147 26-49 (213)
487 cd01133 F1-ATPase_beta F1 ATP 97.8 0.00018 4E-09 65.4 10.2 122 103-235 48-177 (274)
488 PRK09099 type III secretion sy 97.8 0.00012 2.6E-09 71.1 9.3 59 104-171 143-201 (441)
489 KOG0733 Nuclear AAA ATPase (VC 97.8 7.3E-05 1.6E-09 73.5 7.8 119 121-277 218-338 (802)
490 cd03240 ABC_Rad50 The catalyti 97.8 0.00013 2.7E-09 64.1 8.7 45 220-276 138-183 (204)
491 smart00534 MUTSac ATPase domai 97.8 3.6E-05 7.8E-10 66.4 5.2 25 128-152 1-25 (185)
492 cd03285 ABC_MSH2_euk MutS2 hom 97.8 3.2E-05 7E-10 68.7 4.9 29 123-151 27-55 (222)
493 PRK06526 transposase; Provisio 97.8 0.00015 3.2E-09 65.8 9.2 40 123-168 95-134 (254)
494 cd01132 F1_ATPase_alpha F1 ATP 97.8 0.00019 4.2E-09 65.1 9.8 121 103-235 48-175 (274)
495 TIGR01243 CDC48 AAA family ATP 97.7 0.00014 2.9E-09 76.1 10.0 116 121-274 207-322 (733)
496 COG4674 Uncharacterized ABC-ty 97.7 9.8E-05 2.1E-09 63.0 7.2 50 111-167 17-66 (249)
497 PRK13768 GTPase; Provisional 97.7 0.00029 6.3E-09 63.9 10.9 39 127-171 3-41 (253)
498 PRK03992 proteasome-activating 97.7 0.00013 2.8E-09 70.4 9.1 28 122-149 161-188 (389)
499 KOG0733 Nuclear AAA ATPase (VC 97.7 0.00023 5E-09 70.1 10.7 116 122-275 541-656 (802)
500 TIGR02546 III_secr_ATP type II 97.7 0.00026 5.5E-09 68.8 11.0 44 104-149 125-168 (422)
No 1
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=100.00 E-value=2.3e-66 Score=482.61 Aligned_cols=344 Identities=88% Similarity=1.300 Sum_probs=321.9
Q ss_pred CccchHHHHhhhhhhhhcccccccchhhhcHHHHHhCCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHH
Q 047388 1 MIATLKAEEQSQLQLVEREDIDDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKI 80 (352)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~ 80 (352)
|-++-..-+-+.+++.+....|+++..+..++.|++.||++.++++|+++||+|+++++..++.+|++++|+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~kL~~~g~~tv~~~~~~~~~~L~~~~g~s~~~~~ki 80 (344)
T PLN03187 1 MSASAQADEGAQLQLVEAEEVDEEEDLFESIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKI 80 (344)
T ss_pred CchhhhhhhhhhhhhhhhhhhhhhhhcccCHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHH
Confidence 45566667777888888888888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCchhhhHHhhhcccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCC
Q 047388 81 CEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGN 160 (352)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~ 160 (352)
++.+++.++.+|.++.+++..+....+++||++.||++|+|||++|.+|+|+|+||+||||||+|+|.+++.|...||.+
T Consensus 81 ~~~a~~~~~~~~~ta~~~~~~~~~~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~ 160 (344)
T PLN03187 81 CEAAEKLLNQGFITGSDALLKRKSVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGN 160 (344)
T ss_pred HHHHHHhhcccCCcHHHHHhhhccCceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCC
Confidence 99999999999999999988777888999999999999999999999999999999999999999999999998888888
Q ss_pred CeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCC
Q 047388 161 GKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTG 240 (352)
Q Consensus 161 ~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~ 240 (352)
++|+|||+|++|+++|+.+++++++++++.+++|+.+.++++.+++..++..+...+.+.++++|||||++++++.++.+
T Consensus 161 ~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~ 240 (344)
T PLN03187 161 GKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG 240 (344)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccC
Confidence 99999999999999999999999999999999999999999999999888888777777899999999999999999988
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeecCCeEEEEEE
Q 047388 241 RGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVF 320 (352)
Q Consensus 241 ~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~ 320 (352)
++++.+|++.+.++++.|+++|+++|++||+|||++..+++.+|.+++.+|+||+.|+|++++|++|++.++..|+++|+
T Consensus 241 rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTNqv~~~~~~~~~~~~~~~pagG~~~~h~~~~Rl~l~k~~~~~R~~~v~ 320 (344)
T PLN03187 241 RGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHAATIRLMLRKGKGEQRVCKVF 320 (344)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEecEEEcCCcccccCCCCCCCCchhhheeeeEEEEEEcCCCCeEEEEEE
Confidence 88889999989999999999999999999999999987765545578889999999999999999999988889999999
Q ss_pred eCCCCCcccccccceeeeeEEEeCCCccCCCC
Q 047388 321 DAPNLPEAEAISFSYHIILIKITPGGIADAKD 352 (352)
Q Consensus 321 Ks~~~~~~~~~~~~~~~~~f~I~~~Gi~~~~~ 352 (352)
|||++|++++. |.|+++||.|++|
T Consensus 321 ksp~lp~~~~~--------f~It~~GI~d~~~ 344 (344)
T PLN03187 321 DAPNLPEAEAE--------FQITSGGIMDAKD 344 (344)
T ss_pred ECCCCCCceEE--------EEEeCCCccCCCC
Confidence 99999999988 9999999999876
No 2
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=7.1e-66 Score=442.68 Aligned_cols=323 Identities=56% Similarity=0.889 Sum_probs=309.2
Q ss_pred cccchhhhcHHHHHhCCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHHHHhhcCCCchhhhHHh
Q 047388 22 DDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSDALLR 101 (352)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (352)
|.+......|+.++.+|+...++.+|+..|++|+..++.++.+-|.++.++++..+.++.+++.+.++.+|.+|.++++.
T Consensus 11 ~~~~~l~~ai~~l~~~gi~~td~~kLk~~gi~tikgv~ist~r~l~~lkgise~kv~klkeaa~k~~~~~f~tA~e~le~ 90 (335)
T KOG1434|consen 11 DVSFPLSPAIEELQVHGINVTDIEKLKSKGICTIKGVLISTRRALCKLKGISEVKVDKLKEAANKSISHGFCTALELLEQ 90 (335)
T ss_pred ccccccchhHHHHHhcccchhhHHhhccCCeeeEeeeeehhHHHHHHHhhHHHHhhhhHHHhhCCccCcCcchHHHHHhh
Confidence 33444556699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHH
Q 047388 102 RKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIA 181 (352)
Q Consensus 102 ~~~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~ 181 (352)
+.....|+||+..||.+||||++..++++|+|.+|+|||++++++|+++++|.++||.+++++|||||++|.++|+++++
T Consensus 91 r~~v~~ItTgs~~lD~ILGGGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdRi~~IA 170 (335)
T KOG1434|consen 91 RKTVGSITTGSSALDDILGGGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPDRIKDIA 170 (335)
T ss_pred hhccceeecchHHHhhhhcCCccchhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcC-CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHH
Q 047388 182 ERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEE-PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTK 260 (352)
Q Consensus 182 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~-~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~ 260 (352)
++++++++.+++|+.|.++++.+++++++..+...+.++ +.++||||||+++|+.+|+|+|++++||+.+.+++..|.+
T Consensus 171 e~~~~d~d~~LdNI~y~Ra~~se~qmelv~~L~~~~se~g~~rlvIVDsIma~FRvDy~grgeLseRqqkLn~ml~kl~~ 250 (335)
T KOG1434|consen 171 ERFKVDPDFTLDNILYFRAYNSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALFRVDYDGRGELSERQQKLNQMLQKLNK 250 (335)
T ss_pred HHhCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhcCcEEEEEEeceehheeecccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred HHHHhCcEEEEEcccccCCCCC-cccCCCCCCCcchhhhhccceEEEEEeecCCeEEEEEEeCCCCCcccccccceeeee
Q 047388 261 ISEEFNVAVYMTNQVIADPGGG-VFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIIL 339 (352)
Q Consensus 261 la~~~~~~viv~~h~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~Ks~~~~~~~~~~~~~~~~~ 339 (352)
+|++++++|+++||++.+++.. +|...+.+|+||++|+|++++|+.|+|++|+.|+++++|||.+|+.++.
T Consensus 251 laeefnvAVfltNQvttdpga~~~f~s~~~kp~gGh~~aHAsttRlilrkgrg~eR~Akl~dSP~mpe~e~~-------- 322 (335)
T KOG1434|consen 251 LAEEFNVAVFLTNQVTTDPGAGMTFASQDLKPAGGHSWAHASTTRLILRKGRGDERVAKLYDSPSMPEAEAS-------- 322 (335)
T ss_pred HHHhccEEEEEecceecCCcccccccccccCccccchhhhhhheeEEEEcCCcceeeeecccCCCCCcceEE--------
Confidence 9999999999999999988665 6767778999999999999999999999999999999999999999998
Q ss_pred EEEeCCCccCCCC
Q 047388 340 IKITPGGIADAKD 352 (352)
Q Consensus 340 f~I~~~Gi~~~~~ 352 (352)
|.|+++||.|+.+
T Consensus 323 y~It~~Gi~dss~ 335 (335)
T KOG1434|consen 323 YVITPGGIRDSSV 335 (335)
T ss_pred EEEcCCccccCCC
Confidence 9999999999764
No 3
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=100.00 E-value=4.7e-63 Score=457.86 Aligned_cols=312 Identities=72% Similarity=1.085 Sum_probs=294.4
Q ss_pred HHHHHhCCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHHHHhhcCCCchhhhHHhhhccccccc
Q 047388 31 IDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITT 110 (352)
Q Consensus 31 ~~~l~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~T 110 (352)
++.|+..|+++.++++|+++||+|+++++..++.+|++++|+|++++.++++.+.+.+..+|.+|.++++.+....+++|
T Consensus 1 ~~~~~~~g~~~~~~~~L~~~g~~t~~~~~~~~~~~L~~~~gls~~~~~~i~~~~~~~~~~~~~ta~~~~~~~~~~~~isT 80 (313)
T TIGR02238 1 IDKLQAHGINAADIKKLKSAGICTVNGVIMTTRRALCKIKGLSEAKVDKIKEAASKIINPGFITAFEISQKRKKVLKITT 80 (313)
T ss_pred CchhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHhhhcccCccHHHHHHhhccCceeCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999988888899999
Q ss_pred CChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCccc
Q 047388 111 GSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGA 190 (352)
Q Consensus 111 G~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~ 190 (352)
|++.||++|+||+++|.+++|+|+||+||||||++++.+++.|...|+.+++|+|||+|++|+++|+.+++++++++++.
T Consensus 81 G~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~ 160 (313)
T TIGR02238 81 GSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDA 160 (313)
T ss_pred CCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHH
Confidence 99999999999999999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred ccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEE
Q 047388 191 VLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVY 270 (352)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~vi 270 (352)
+++|+.+.++++.+++.+.+..+...+.+.++++|||||++++|+.++.+++++.+|++.+.+++..|+++|+++|++||
T Consensus 161 ~l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavv 240 (313)
T TIGR02238 161 VLDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVF 240 (313)
T ss_pred hcCcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHHHHHcCcEEE
Confidence 99999999999999999998888877877899999999999999998888888999998899999999999999999999
Q ss_pred EEcccccCCCCC-cccCCCCCCCcchhhhhccceEEEEEeecCCeEEEEEEeCCCCCcccccccceeeeeEEEeCCCccC
Q 047388 271 MTNQVIADPGGG-VFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIAD 349 (352)
Q Consensus 271 v~~h~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I~~~Gi~~ 349 (352)
+|||++..+++. +|.+++.+|+||+.|+|++++||+|+|.+++.|+++|+|+|+.|++++. |.|+++||.|
T Consensus 241 itNqv~~~~~~~~~~~~~~~~p~gG~~~~h~~~~Rl~l~k~~~~~R~~~~~~sp~~p~~~~~--------f~i~~~Gi~~ 312 (313)
T TIGR02238 241 VTNQVQADPGATMTFIADPKKPIGGHVLAHASTTRILLRKGRGEERVAKLYDSPDMPEAEAS--------FQITEGGIAD 312 (313)
T ss_pred EECceEecCCcccccCCCCccCcchhhhhhheeEEEEEEecCCCeEEEEEeeCCCCCCeEEE--------EEEeCCcccC
Confidence 999999976543 5657788999999999999999999998888999999999999999998 9999999988
Q ss_pred C
Q 047388 350 A 350 (352)
Q Consensus 350 ~ 350 (352)
+
T Consensus 313 ~ 313 (313)
T TIGR02238 313 A 313 (313)
T ss_pred C
Confidence 5
No 4
>PTZ00035 Rad51 protein; Provisional
Probab=100.00 E-value=1.8e-62 Score=458.74 Aligned_cols=327 Identities=64% Similarity=1.011 Sum_probs=304.9
Q ss_pred cccccccchhhhcHHHHHhCCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHHHHhhcCCCchhh
Q 047388 18 REDIDDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSD 97 (352)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (352)
++.+|++...++.++.|+.+||++.++++|+++||+|+++++..++.+|++++|+++++++++++.+++.+..+|.+|.+
T Consensus 10 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~kL~~~g~~t~~~~~~~~~~~L~~~~gis~~~~~~i~~~~~~~~~~~~~ta~~ 89 (337)
T PTZ00035 10 EEEEEEEAEGFQEIEKLQSAGINAADIKKLKEAGICTVESVAYATKKDLCNIKGISEAKVEKIKEAASKLVPMGFISATE 89 (337)
T ss_pred ccchhhcccCCccHHHHhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHHHhcccCCCCHHH
Confidence 33445555557799999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred hHHhhhcccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhH
Q 047388 98 ALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRI 177 (352)
Q Consensus 98 ~~~~~~~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl 177 (352)
+++.+.+..+++||++.||++|+|||++|++++|+|+||+||||||++++.+++.|...||.+++|+||++|+.|+++|+
T Consensus 90 ~~~~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri 169 (337)
T PTZ00035 90 YLEARKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI 169 (337)
T ss_pred HHHhhccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH
Confidence 99888888999999999999999999999999999999999999999999999988888888999999999999999999
Q ss_pred HHHHHHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHH
Q 047388 178 VPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSR 257 (352)
Q Consensus 178 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~ 257 (352)
.+++++++++++.+++|+.+.++++.+++.+++..+...+...++++|||||++++++.++.+++++.+|++.+.+++..
T Consensus 170 ~~ia~~~g~~~~~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~ 249 (337)
T PTZ00035 170 VQIAERFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRA 249 (337)
T ss_pred HHHHHHhCCChHhHhhceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888777777789999999999999999888888888999889999999
Q ss_pred HHHHHHHhCcEEEEEcccccCCCCC-cccCCCCCCCcchhhhhccceEEEEEeecCCeEEEEEEeCCCCCccccccccee
Q 047388 258 LTKISEEFNVAVYMTNQVIADPGGG-VFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYH 336 (352)
Q Consensus 258 L~~la~~~~~~viv~~h~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~Ks~~~~~~~~~~~~~~ 336 (352)
|+++|+++|++||+|||++..+++. +|.+++.+|+||+.|+|++++||+|++.++..|+++|+|+|++|++++.
T Consensus 250 L~~la~~~~vavvvtNqv~~~~~~~~~~~~~~~~p~gG~~~~h~~~~Rl~l~k~~~~~R~~~i~ksp~~p~~~~~----- 324 (337)
T PTZ00035 250 LQKLADEFNVAVVITNQVMADVDGASMFVADPKKPIGGHIIAHASTTRLSLRKGRGEQRICKIYDSPNLPESEAV----- 324 (337)
T ss_pred HHHHHHHcCcEEEEecceEEecCCccccCCCCccCCchHHHHhheeEEEEEEecCCCeeEEEEEECCCCCCeeEE-----
Confidence 9999999999999999999987654 5667888999999999999999999998888999999999999999987
Q ss_pred eeeEEEeCCCccCCCC
Q 047388 337 IILIKITPGGIADAKD 352 (352)
Q Consensus 337 ~~~f~I~~~Gi~~~~~ 352 (352)
|.|+++||.+++|
T Consensus 325 ---f~It~~Gi~~~~~ 337 (337)
T PTZ00035 325 ---FAISEGGIIDAKD 337 (337)
T ss_pred ---EEEeCCccccCCC
Confidence 9999999999876
No 5
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=100.00 E-value=8.6e-62 Score=452.72 Aligned_cols=331 Identities=53% Similarity=0.865 Sum_probs=304.8
Q ss_pred hhhhcccccccchhhhcHHHHHhCCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHHHHhhcCCC
Q 047388 14 QLVEREDIDDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYI 93 (352)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (352)
+++...++++....+..++.|+.+||++.++++|+++||.|+++++..++.+|++++++++.++++++..+.+.++.+|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~i~kL~~~g~~T~~~~~~~~~~~L~~i~~is~~~~~~~~~~~~~~~~~~~~ 90 (342)
T PLN03186 11 QAMQEEEEEEAAHGPFPIEQLQASGIAALDIKKLKDAGIHTVESLAYAPKKDLLQIKGISEAKVEKILEAASKLVPLGFT 90 (342)
T ss_pred hhccchhhcccccCCccHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHHhcccccc
Confidence 45555556666666779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHhhhcccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCC
Q 047388 94 TGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFR 173 (352)
Q Consensus 94 ~~~~~~~~~~~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~ 173 (352)
++.+++..+....+++||++.||++|+||+++|++++|+|+||+|||+||+++|.+++.|...|+.+++|+|||+|++|+
T Consensus 91 ta~~~~~~~~~~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~ 170 (342)
T PLN03186 91 TASQLHAQRQEIIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFR 170 (342)
T ss_pred hHHHHhhcccCcceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCcc
Confidence 99999888777889999999999999999999999999999999999999999999998888888888999999999999
Q ss_pred hhhHHHHHHHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHH
Q 047388 174 PDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 253 (352)
Q Consensus 174 ~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~ 253 (352)
++|+.+++++++++++.+++|+.+.+.++.+++..++..+...+...++++|||||++++|+.++.+++++.+|++.+.+
T Consensus 171 ~eRl~qia~~~~~~~~~~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~ 250 (342)
T PLN03186 171 PQRLIQIAERFGLNGADVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLGK 250 (342)
T ss_pred HHHHHHHHHHcCCChhhhccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999998888877777777999999999999999888888888889888999
Q ss_pred HHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCC-CCCcchhhhhccceEEEEEeecCCeEEEEEEeCCCCCcccccc
Q 047388 254 MLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPK-KPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAIS 332 (352)
Q Consensus 254 i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~-~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~Ks~~~~~~~~~~ 332 (352)
++..|+++|+++|++||+|||+...+++..+.+++. +|+||+.|+|++++||+|++.++..|+++++|||++|++++.
T Consensus 251 ~l~~L~~lA~~~~vaVviTNqv~~~~~~~~~~~~~~~~P~gG~~~~h~~~tRl~L~k~~~~~R~~~v~ksp~~p~~e~~- 329 (342)
T PLN03186 251 FLRSLQRLADEFGVAVVITNQVVAQVDGSAFFAGPQLKPIGGNIMAHASTTRLALRKGRGENRICKVISSPCLPEAEAR- 329 (342)
T ss_pred HHHHHHHHHHHcCCEEEEEcCEEEccCCccccCCCccccchhHHHHhhccEEEEEEecCCCeEEEEEEECCCCCCeEEE-
Confidence 999999999999999999999998777642234555 999999999999999999998888999999999999999988
Q ss_pred cceeeeeEEEeCCCccCCCC
Q 047388 333 FSYHIILIKITPGGIADAKD 352 (352)
Q Consensus 333 ~~~~~~~f~I~~~Gi~~~~~ 352 (352)
|.|+++||.++.|
T Consensus 330 -------F~I~~~Gi~~~~~ 342 (342)
T PLN03186 330 -------FSISSEGVTDVKD 342 (342)
T ss_pred -------EEEECCceecCCC
Confidence 9999999999875
No 6
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=100.00 E-value=2.8e-58 Score=427.30 Aligned_cols=314 Identities=56% Similarity=0.922 Sum_probs=292.0
Q ss_pred HHHHHhCCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHHHHhhcCCCchhhhHHhhhccccccc
Q 047388 31 IDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITT 110 (352)
Q Consensus 31 ~~~l~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~T 110 (352)
++.|+..|+++.++++|+++||.|+++++..++.+|++++++++.++.++++.+.+.+...+.++.+++..+....+++|
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~L~~i~~ls~~~~~~~~~~~~~~~~~~~~t~~~l~~~~~~~~~~~t 80 (316)
T TIGR02239 1 IEKLEGNGITAADIKKLQEAGLHTVESVAYAPKKQLLEIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRQEVIQLTT 80 (316)
T ss_pred CchhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHhcccccccHHHHHhcccccceeCC
Confidence 35788899999999999999999999999999999999999999999999999999999999999999877777889999
Q ss_pred CChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCccc
Q 047388 111 GSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGA 190 (352)
Q Consensus 111 G~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~ 190 (352)
|++.||.+|+||+++|++++|+|+||+|||+||++++.+++.|...||.+++|+||++|+.|++.|+.+++++++++++.
T Consensus 81 g~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~ 160 (316)
T TIGR02239 81 GSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPED 160 (316)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHH
Confidence 99999999999999999999999999999999999999988888778788899999999999999999999999999999
Q ss_pred ccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEE
Q 047388 191 VLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVY 270 (352)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~vi 270 (352)
+++|+.+.+.++.+++...+..+...+...++++|||||++++|+.++.+++++..|+..+.+++..|+++|++++++||
T Consensus 161 ~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~la~~~~vavv 240 (316)
T TIGR02239 161 VLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVV 240 (316)
T ss_pred hhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 99999999999999988888887777777789999999999999988877777888888889999999999999999999
Q ss_pred EEcccccCCCCC--cccCCCCCCCcchhhhhccceEEEEEeecCCeEEEEEEeCCCCCcccccccceeeeeEEEeCCCcc
Q 047388 271 MTNQVIADPGGG--VFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIA 348 (352)
Q Consensus 271 v~~h~~~~~~~~--~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I~~~Gi~ 348 (352)
+|||++..+++. .|.+++.+|+||..|+|++++||+|++.++..|+++++|||++|++++. |.|+++||.
T Consensus 241 ~tNqv~~~~~~~~~~~~g~~~~p~gG~~~~h~~~~ri~l~k~~~~~R~~~v~ksp~~p~~~~~--------f~i~~~Gi~ 312 (316)
T TIGR02239 241 ITNQVVAQVDGAGSMFAGDPKKPIGGNIMAHASTTRLSLRKGRGEQRICKIYDSPCLPESEAM--------FAIYEDGIG 312 (316)
T ss_pred EECceEEecCCccccccCCCCcCCchHHHHhhccEEEEEEecCCCeEEEEEEECCCCCCeEEE--------EEEeCCcee
Confidence 999999877654 3557888999999999999999999998888899999999999999988 999999999
Q ss_pred CCCC
Q 047388 349 DAKD 352 (352)
Q Consensus 349 ~~~~ 352 (352)
|++|
T Consensus 313 ~~~~ 316 (316)
T TIGR02239 313 DPKE 316 (316)
T ss_pred cCCC
Confidence 9875
No 7
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=100.00 E-value=3.9e-54 Score=389.17 Aligned_cols=254 Identities=48% Similarity=0.777 Sum_probs=229.8
Q ss_pred cCCCchhhhHHhhhcccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 90 FGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
.+|.||.++++.+.....|+||++.||.+|+||++.|.+|||+|+||+|||+||+|+|+++++|...||.+++|+|||||
T Consensus 2 ~~f~ta~~~~~~~~~~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe 81 (256)
T PF08423_consen 2 MGFQTAAELLEQRKRWSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTE 81 (256)
T ss_dssp TSSEEHHHHHHHHHTS-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESS
T ss_pred CCcccHHHHHHHhhcCCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCC
Confidence 47899999998888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHH
Q 047388 170 GTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQ 249 (352)
Q Consensus 170 ~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~ 249 (352)
+.|+++|+.+++++++.+++++++|+.+.++++..++..++.++...+.+.+++||||||++++|+.++.+++++.+|+.
T Consensus 82 ~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~ 161 (256)
T PF08423_consen 82 GTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQR 161 (256)
T ss_dssp SSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHH
T ss_pred CCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHH
Confidence 99999999999999999999999999999999999999999988888888899999999999999999888778899999
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEcccccCCCCC-cccCCCCCCCcchhhhhccceEEEEEeecCCeEEEEEEeCCCCCcc
Q 047388 250 KLGQMLSRLTKISEEFNVAVYMTNQVIADPGGG-VFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEA 328 (352)
Q Consensus 250 ~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~Ks~~~~~~ 328 (352)
.+.++++.|+++|++++++||+|||++..+++. .|.++..+|++|..|+|++++||+|+|.++..|.++|.|+|+.|+.
T Consensus 162 ~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~~~~~~~~~~~~PalG~~w~h~~~~Rl~l~k~~~~~R~~~i~ksp~~p~~ 241 (256)
T PF08423_consen 162 MLARLARILKRLARKYNIAVVVTNQVTTKIDSNSLFDGDRLKPALGHSWSHAVTTRLFLSKGRGSERVATIVKSPSLPEG 241 (256)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEEECSSTT----SSTTSEEETTHHHHHHHSSEEEEEEECSTTEEEEEEEECSSSSSE
T ss_pred HHHHHHHHHHHHHHhCCceEEeeceeeecCCcccccccccceecCcchhhhhccEEEEEEeCCCCeEEEEEeECCCCCCc
Confidence 999999999999999999999999999887764 4556778999999999999999999998888999999999999999
Q ss_pred cccccceeeeeEEEeCCCccCCC
Q 047388 329 EAISFSYHIILIKITPGGIADAK 351 (352)
Q Consensus 329 ~~~~~~~~~~~f~I~~~Gi~~~~ 351 (352)
++. |.|+++||+|++
T Consensus 242 ~~~--------f~It~~Gi~d~~ 256 (256)
T PF08423_consen 242 SAS--------FQITEDGIRDVK 256 (256)
T ss_dssp EEE--------EEEETTEEEE--
T ss_pred eEE--------EEEeCCCccCCC
Confidence 887 999999999974
No 8
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=100.00 E-value=1.7e-51 Score=384.69 Aligned_cols=312 Identities=48% Similarity=0.772 Sum_probs=282.1
Q ss_pred hhhcHHHHHhCCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHHHHhhc-CCCchhhhHHhhhcc
Q 047388 27 LFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNF-GYITGSDALLRRKAV 105 (352)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 105 (352)
.+.++..+ +|+.+...++|.++||.|+++++..++.+|.+..|++++.+.++++.+...+.. ++.++.+++..+.+.
T Consensus 4 ~~~~l~~l--~gIg~~~a~~L~~~Gi~t~~dl~~~~~~~L~~~~g~~~~~a~~l~~~a~~~~~~~~~~t~~~l~~~~ks~ 81 (317)
T PRK04301 4 KEKDLEDL--PGVGPATAEKLREAGYDTVEAIAVASPKELSEAAGIGESTAAKIIEAAREAADIGGFETALEVLERRKNV 81 (317)
T ss_pred ccccHhhc--CCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHhcCCCHHHHHHHHHHHHHhhccccCccHHHHHHhhccC
Confidence 35567776 899999999999999999999999999999999999999999999988877655 688888887766778
Q ss_pred cccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcC
Q 047388 106 IKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFG 185 (352)
Q Consensus 106 ~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~ 185 (352)
.+++||++.||++|+||+++|.+++|+|+||+|||+||++++.+++.+...|+.+++|+||++|++|+++|+.+++++++
T Consensus 82 ~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g 161 (317)
T PRK04301 82 GKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALG 161 (317)
T ss_pred CccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999998888888889999999999999999999999999
Q ss_pred CCcccccccEEEEecCCHHHHHHHHHHHHHHhhc-CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHH
Q 047388 186 MDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEE 264 (352)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~-~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~ 264 (352)
++++.+++++.++++.+..++..++..+...+.+ .++++|||||++++++.++.++++..+|++.+.+++..|+++|++
T Consensus 162 ~~~~~~l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~ 241 (317)
T PRK04301 162 LDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADL 241 (317)
T ss_pred CChHhhhccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9998889999999998888887777777777776 689999999999999988777667778888788999999999999
Q ss_pred hCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeecCCeEEEEEEeCCCCCcccccccceeeeeEEEeC
Q 047388 265 FNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITP 344 (352)
Q Consensus 265 ~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I~~ 344 (352)
+|++||+|||+...++. +.+++..|++|..|.|++++||.|++.++..|+++++|+|++|++++. |.|++
T Consensus 242 ~~vavl~tnqv~~~~~~--~~~~~~~~~~G~~~~~~~~~rl~l~k~~~~~R~~~v~k~~~~~~~~~~--------f~I~~ 311 (317)
T PRK04301 242 YNAAVVVTNQVMARPDA--FFGDPTQPIGGHILGHTATFRIYLRKSKGNKRIARLVDSPHLPEGEAV--------FRITE 311 (317)
T ss_pred hCCEEEEeceEEecccc--ccCccccCCcchHhHhheeEEEEEEecCCCceEEEEEeCCCCCCceEE--------EEEeC
Confidence 99999999999886532 236777899999999999999999998788999999999999999887 99999
Q ss_pred CCccCC
Q 047388 345 GGIADA 350 (352)
Q Consensus 345 ~Gi~~~ 350 (352)
+||.+.
T Consensus 312 ~Gi~~~ 317 (317)
T PRK04301 312 EGIRDA 317 (317)
T ss_pred CcccCC
Confidence 999863
No 9
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=100.00 E-value=9.6e-51 Score=379.13 Aligned_cols=303 Identities=50% Similarity=0.807 Sum_probs=274.2
Q ss_pred CCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHHHHhhc-CCCchhhhHHhhhcccccccCChhh
Q 047388 37 QGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNF-GYITGSDALLRRKAVIKITTGSQAL 115 (352)
Q Consensus 37 ~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~TG~~~L 115 (352)
+|+++..+++|.++||.|+++++..++.+|.+++|++.+.+.+++..+.+.+.. .+.++.+++..+.....++||++.+
T Consensus 5 ~gig~~~~~~L~~~Gi~ti~dl~~~~~~~L~~~~g~~~~~a~~l~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~Tg~~~l 84 (310)
T TIGR02236 5 PGVGPATAEKLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAARKAADLGGFETADDVLERRKTIGKITTGSKEL 84 (310)
T ss_pred CCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHhccCCCHHHHHHHHHHHHHHhhccCCCCHHHHHHhhccCCeecCCCHHH
Confidence 899999999999999999999999999999999999998899998888866544 4678888877777788999999999
Q ss_pred HHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccE
Q 047388 116 DELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNI 195 (352)
Q Consensus 116 D~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i 195 (352)
|.+|+||++.|.+++|+|+||+|||+||+++|.+++.|...|+.+++|+||++|++|+++|+.++++.++++.+.+++++
T Consensus 85 D~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i 164 (310)
T TIGR02236 85 DELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNI 164 (310)
T ss_pred HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhce
Confidence 99999999999999999999999999999999999998888877789999999999999999999999999988888899
Q ss_pred EEEecCCHHHHHHHHHHHHHHhhcC--CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEc
Q 047388 196 IYARAYTYEHQYNLLLGLAAKMSEE--PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTN 273 (352)
Q Consensus 196 ~~~~~~~~~~~~~~l~~l~~~l~~~--~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~ 273 (352)
.+.+..+...+..++..+...+.+. ++++|||||++++++.++.++++..+|++.+.+++..|+.+|++++++||+||
T Consensus 165 ~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tn 244 (310)
T TIGR02236 165 YVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNAAVVVTN 244 (310)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCchhHHHHHHHHHHHHHHHHHHHHHhCcEEEEec
Confidence 9999988887777777777777665 48999999999999988877777888888888999999999999999999999
Q ss_pred ccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeecCCeEEEEEEeCCCCCcccccccceeeeeEEEeCCCccC
Q 047388 274 QVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIAD 349 (352)
Q Consensus 274 h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I~~~Gi~~ 349 (352)
|+++.+++ +.+++..|+||..|+|++++||.|++.++..|.+++.|||+.|++++. |+|+++||.+
T Consensus 245 qv~~~~~~--~~~~~~~~~~G~~~~h~~~~rl~l~~~~~~~R~~~~~k~~~~~~~~~~--------f~i~~~Gi~~ 310 (310)
T TIGR02236 245 QVMARPDA--FFGDPTRPIGGHILGHAATFRVYLRKGKGDKRIARLVDSPHLPEGEAV--------FRITEKGIED 310 (310)
T ss_pred eeeecCcc--ccCccccCCcchhhhhheeEEEEEEecCCCeEEEEEEECCCCCCeeEE--------EEEeCCCccC
Confidence 99986543 336677899999999999999999997778899999999999999998 9999999975
No 10
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=100.00 E-value=3.3e-41 Score=302.92 Aligned_cols=233 Identities=62% Similarity=0.983 Sum_probs=206.3
Q ss_pred cccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCC
Q 047388 108 ITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMD 187 (352)
Q Consensus 108 i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~ 187 (352)
++||++.||++|+||+++|++++|+|+||+|||+||++++.+++.+..++|.+.+|+||++|+.+++.|+.+++++++++
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~ 80 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLD 80 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccC
Confidence 58999999999999999999999999999999999999999988877677778999999999999999999999999999
Q ss_pred cccccccEEEEecCCHHHHHHHHHHHHHHhhcC-CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhC
Q 047388 188 PGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEE-PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFN 266 (352)
Q Consensus 188 ~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~-~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~ 266 (352)
++.+++++.+.+.++..++...+..+...+.+. ++++|||||++++++.++.+.++..+|++.+.+++..|+++|++++
T Consensus 81 ~~~~~~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~ 160 (235)
T cd01123 81 PEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFN 160 (235)
T ss_pred hHhHhcCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888999999999999888888888888888888 9999999999999886665544456777888999999999999999
Q ss_pred cEEEEEcccccCCCCC-cccCCCCCCCcchhhhhccceEEEEEeecCCeEEEEEEeCCCCCcccccccceeeeeEEEeCC
Q 047388 267 VAVYMTNQVIADPGGG-VFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPG 345 (352)
Q Consensus 267 ~~viv~~h~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I~~~ 345 (352)
++||+|||+....++. .+.++..+|++|..|.|++++|+++++..+..|.++|.|+|..|..... |+|+++
T Consensus 161 ~avl~tn~~~~~~~~~~~~~~~~~~p~lG~~w~~~v~~Rl~l~~~~~~~r~~~i~k~~~~~~~~~~--------f~It~~ 232 (235)
T cd01123 161 VAVVITNQVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKGRGEERIAKIVDSPHLPEGEAV--------FAITEE 232 (235)
T ss_pred CEEEEeccEeecCCcccccCCCCeeccCccHhhCCceEEEEEEECCCCceEEEEeeCCCCCCceEE--------EEEeCC
Confidence 9999999998765432 1223455799999999999999999998777899999999999966565 999999
Q ss_pred Ccc
Q 047388 346 GIA 348 (352)
Q Consensus 346 Gi~ 348 (352)
||+
T Consensus 233 Gi~ 235 (235)
T cd01123 233 GIR 235 (235)
T ss_pred ccC
Confidence 985
No 11
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.3e-40 Score=294.86 Aligned_cols=256 Identities=37% Similarity=0.480 Sum_probs=220.1
Q ss_pred CCHHHHHHHHHHHHHHhhcC-CCchhhhHHhhhcccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 72 LSEAKVEKICEAAEKIVNFG-YITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
.+...+.++...+.+....+ +..+............++||+..||.+|+||+|+|.|++|+||+||||||+|+|+++++
T Consensus 5 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~a 84 (279)
T COG0468 5 IDEEKALEAALAQIEKAFGKGSIMALGGDERREDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANA 84 (279)
T ss_pred chhhhHHHHHHHHHHHhhcccchhhhhHHHHhhccccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHh
Confidence 34444555555544444322 33333333344568899999999999999999999999999999999999999999999
Q ss_pred cCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEccc
Q 047388 151 QLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSV 230 (352)
Q Consensus 151 ~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl 230 (352)
+. .+++|+|||+|+.|+++|+++++... ++++.+.++++.+++.+++..+.....+ ++++|||||+
T Consensus 85 q~------~g~~a~fIDtE~~l~p~r~~~l~~~~-------~d~l~v~~~~~~e~q~~i~~~~~~~~~~-~i~LvVVDSv 150 (279)
T COG0468 85 QK------PGGKAAFIDTEHALDPERAKQLGVDL-------LDNLLVSQPDTGEQQLEIAEKLARSGAE-KIDLLVVDSV 150 (279)
T ss_pred hc------CCCeEEEEeCCCCCCHHHHHHHHHhh-------hcceeEecCCCHHHHHHHHHHHHHhccC-CCCEEEEecC
Confidence 98 56799999999999999999998775 4899999999999999998887777665 7999999999
Q ss_pred ccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEee
Q 047388 231 IALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKG 310 (352)
Q Consensus 231 ~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~ 310 (352)
+++++.++.+++.+..|++.+.+.++.|..++++++++||++||+..+++. +| +++..|.||+.+.|+++.|+.+++.
T Consensus 151 aa~~r~~~~~d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~-~f-~~~~~~~GG~~L~~~as~rl~l~k~ 228 (279)
T COG0468 151 AALVRAEEIEDGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGV-MF-GDPETTTGGNALKFYASVRLDLRRI 228 (279)
T ss_pred cccchhhhcCcchHHHHHHHHHHHHHHHHHHHHHcCcEEEEECceeeecCc-cc-CCcccCCCchHHHhhhheEEEEeec
Confidence 999999888777889999999999999999999999999999999997754 34 5788999999999999999999998
Q ss_pred ------cCCeEEEEEEeCCCCCcc-cccccceeeeeEEEeCCCccCCC
Q 047388 311 ------KGEQRVCKVFDAPNLPEA-EAISFSYHIILIKITPGGIADAK 351 (352)
Q Consensus 311 ------~~~~R~~~i~Ks~~~~~~-~~~~~~~~~~~f~I~~~Gi~~~~ 351 (352)
.+..|.++++|+|..|+. ++. |.|+.+|+.+..
T Consensus 229 ~~~~~~~g~~r~~~vvk~~~~p~~~~a~--------f~I~~~~~~~~~ 268 (279)
T COG0468 229 ESLKEDVGNKRRVKVVKNKVAPPFKEAE--------FDITYGGGIDRE 268 (279)
T ss_pred cccccccCCeEEEEEEeCCCCCCCceeE--------EEeecCcccccc
Confidence 789999999999999998 676 999999998864
No 12
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=100.00 E-value=1.3e-37 Score=277.99 Aligned_cols=222 Identities=57% Similarity=0.856 Sum_probs=193.9
Q ss_pred cccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCC
Q 047388 108 ITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMD 187 (352)
Q Consensus 108 i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~ 187 (352)
++||++.||++|+||+++|++++|+|+||+|||+||++++.+.+.+.+.+|.+.+|+||++|+.+++.++.++++.++.+
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~ 80 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLD 80 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccc
Confidence 68999999999999999999999999999999999999999988766666677999999999999999999999999888
Q ss_pred cccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCc
Q 047388 188 PGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNV 267 (352)
Q Consensus 188 ~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~ 267 (352)
++.+++|+.+.+..+.+++...+..+.......++++|||||++.+++..+.+.+...+|++.+.++++.|+.+|+++++
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~ 160 (226)
T cd01393 81 PEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNV 160 (226)
T ss_pred hhhhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 88888999999999988888887777665556789999999999998876554434567777888999999999999999
Q ss_pred EEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeecC---CeEEEEEEeCCCCCccccc
Q 047388 268 AVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKG---EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 268 ~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~---~~R~~~i~Ks~~~~~~~~~ 331 (352)
+||++||++...++. .+++..|+||..|+|++++||.|++..+ ..|.++++|+|..|++++.
T Consensus 161 ~vi~tnq~~~~~~~~--~~~~~~p~~G~~~~~~~~~ri~l~~~~~~~~~~r~~~~~k~~~~~~~~~~ 225 (226)
T cd01393 161 AVVFTNQVRAKVDVM--FGDPETPAGGNALAHASTTRLDLRKGRGIIGERRIAKVVKSPALPEAEAE 225 (226)
T ss_pred EEEEEEEEeeecccc--cCCCccccCchhhhCcccEEEEEEecCCccCcEEEEEEEeCCCCCCcccc
Confidence 999999999865432 2345679999999999999999998765 6899999999999998775
No 13
>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]
Probab=100.00 E-value=9.4e-38 Score=272.78 Aligned_cols=286 Identities=29% Similarity=0.397 Sum_probs=220.2
Q ss_pred hhhhhcCChhhHHhhhCCCHHHHHHHHHHHHHH-hhcCCCchhhhHHhhhcccccccCChhhHHhhcCCCCCCcEEEEec
Q 047388 55 CNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKI-VNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFG 133 (352)
Q Consensus 55 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G 133 (352)
..|++..++.+|.++...+..+...++..+... ...-.... ......+...++||+..||+.|+||++.+.||+|+|
T Consensus 32 ~vdfltlt~~sl~r~~h~s~~e~lr~~~~li~q~~~~~~e~~--~~~s~~~~~~lttgc~~LD~~L~GGi~~~giTEi~G 109 (351)
T KOG1564|consen 32 KVDFLTLTQQSLHRIVHKSTPEDLRVLKDLIMQNLKLKPENL--CSRSKTNRSKLTTGCVALDECLRGGIPTDGITEICG 109 (351)
T ss_pred cccceecChhHHHHHHHhccHHHHHHHHHHHHHHHHhcchhh--hccccCCchhcccccHHHHHHhcCCcccccHHHHhh
Confidence 345666677777777665544433333222211 11001110 001112235699999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCc--c---ccccc----EEEEecCCHH
Q 047388 134 EFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDP--G---AVLDN----IIYARAYTYE 204 (352)
Q Consensus 134 ~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~--~---~~~~~----i~~~~~~~~~ 204 (352)
++|+|||+||+|++..+++|...||.+++++||.||.+|+..|+.+++..+.-.+ + .+.+| |++..+.+.+
T Consensus 110 eSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~~~~~~rp~~~~~~~~~~Npgd~IFv~~~~d~d 189 (351)
T KOG1564|consen 110 ESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLSHTLPQRPNPEKELNYNDNPGDHIFVENVHDVD 189 (351)
T ss_pred ccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHHHHHHHhcccCCCcchhhhhccCCCceEEEEeccchh
Confidence 9999999999999999999999999999999999999999999988887653222 1 12344 8888888888
Q ss_pred HHHHHHH-HHHHHhhcCCceEEEEcccccchhcccCC-CcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCC
Q 047388 205 HQYNLLL-GLAAKMSEEPFRLLIVDSVIALFRVDFTG-RGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGG 282 (352)
Q Consensus 205 ~~~~~l~-~l~~~l~~~~~~lvvIDsl~~l~~~~~~~-~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~ 282 (352)
.+.+++. ++...+.+.++++|||||+++.|+.++.. +.++..|.+.+.++...|+.+|.+++++||++||++...+..
T Consensus 190 ~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~fR~E~d~~~Sdl~~r~~~l~rla~~Lr~LA~~~~~aVV~~NQVtd~~~~~ 269 (351)
T KOG1564|consen 190 HLLHIVNRQLPILLNRKKIKLVIIDSVAALFRSEFDYNPSDLKKRARHLFRLAGKLRQLASKFDLAVVCANQVTDRVETS 269 (351)
T ss_pred hHHHHHhhhccceeccCcceEEEEehhhHHHHHHhccChhhhhhHHHHHHHHHHHHHHHHHhcCccEEEeeccccccccc
Confidence 8888765 55666777799999999999999987752 235668888999999999999999999999999999864321
Q ss_pred -----cccCC--------CCCCCcchhhhhccceEEEEEeec---------CCeEEEEEEeCCCCCcccccccceeeeeE
Q 047388 283 -----VFISD--------PKKPAGGHVLAHAVTIRLMFRKGK---------GEQRVCKVFDAPNLPEAEAISFSYHIILI 340 (352)
Q Consensus 283 -----~~~~~--------~~~~~gg~~~~~~~~~~i~L~~~~---------~~~R~~~i~Ks~~~~~~~~~~~~~~~~~f 340 (352)
.+.+| -..|.+|-.|+|...+|+.+.|.. ...|.++|+-||+.|+..+. |
T Consensus 270 ~~~~~l~~~d~r~~w~sgw~vPsLGL~WaN~v~tRl~l~r~~k~~~sa~~~~~~R~l~VvySp~~p~~~~~--------~ 341 (351)
T KOG1564|consen 270 DDLSGLRIGDYRYLWSSGWVVPSLGLTWANCVSTRLLLSRSTKNCDSAVSRSAKRTLRVVYSPYLPPSSCE--------F 341 (351)
T ss_pred cccCCccccchhhccccccccccccceeccccceeeeeeeccccccchhhcccceEEEEEecCCCCCcceE--------E
Confidence 11111 157999999999999999999831 14699999999999999998 9
Q ss_pred EEeCCCccCC
Q 047388 341 KITPGGIADA 350 (352)
Q Consensus 341 ~I~~~Gi~~~ 350 (352)
.|+.+||..+
T Consensus 342 ~It~eGI~~~ 351 (351)
T KOG1564|consen 342 MITAEGICAV 351 (351)
T ss_pred EEecceEecC
Confidence 9999999764
No 14
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]
Probab=100.00 E-value=4.5e-39 Score=294.12 Aligned_cols=308 Identities=48% Similarity=0.704 Sum_probs=273.2
Q ss_pred cccchhhhcHHHHHhCCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHHHHhhcCCCchhhhHHh
Q 047388 22 DDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSDALLR 101 (352)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (352)
++.+.++.++..+...++++.++..|+.+++.++.++.....+++..+.+++.....+....+....+. + +.
T Consensus 15 ~~~~~~~~~~~~~~~~~ita~~v~~l~~~~l~~v~~l~~~~~~el~~i~~~s~~~~~k~~~~l~~~~~~-------~-~~ 86 (326)
T KOG1433|consen 15 EEIGLSPAPVRFLLAGGITAEDVLLLSEGELSTVEGLAYAGKEELLLIIGLSEAKSGKTVLGLHKLVPM-------L-QL 86 (326)
T ss_pred HhcccCccchhhhhcccccHhhhhhhcccceEEEeccccCcchhheeeeeecccccccHHHHHHHhhHH-------H-Hh
Confidence 444445558999999999999999999999999999999999999999999988777776666655442 2 44
Q ss_pred hhcccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHH
Q 047388 102 RKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIA 181 (352)
Q Consensus 102 ~~~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~ 181 (352)
+.....++||+.+||++|+||++.|.+++|+||||+|||+||+.++..+ |+..++++|||++..|.+.++..++
T Consensus 87 ~~~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~------~gge~~~l~IDs~s~~~~~~~~~ia 160 (326)
T KOG1433|consen 87 RSELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTC------GGGEGKVLYIDTESTFRLERLTEIA 160 (326)
T ss_pred hccceeeccchhhhhHhhccCcccCceeEEecCCCccHHHHHHHHHHhc------cCCcceEEEEecchhcccchhhhhh
Confidence 5667889999999999999999999999999999999999999888765 4578999999999999999999999
Q ss_pred HHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHH
Q 047388 182 ERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKI 261 (352)
Q Consensus 182 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~l 261 (352)
.+++.....+.+++.+.+.++..+.......+...+.+....++++||.++.++.++.+++++.+|+..+...++.|+++
T Consensus 161 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~~~~~~g~~~~~a~~~~~~~~~~~l~~l 240 (326)
T KOG1433|consen 161 GRSGLRGRDTLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALYRTTFKGRGELSARQMLLAKFLRSLKKL 240 (326)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccceeEEEecccccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 99988876666777777777777777777766666666788999999999999999988888999999999999999999
Q ss_pred HHHhCcEEEEEcccccCCCCC-cccCCCCCCCcchhhhhccceEEEEEeecCCeEEEEEEeCCCCCcccccccceeeeeE
Q 047388 262 SEEFNVAVYMTNQVIADPGGG-VFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILI 340 (352)
Q Consensus 262 a~~~~~~viv~~h~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~Ks~~~~~~~~~~~~~~~~~f 340 (352)
+++++++||++||++.+.++. +|..++.+|++|..|+|.+++|+.+++.+++.|++++.++|..|++++. |
T Consensus 241 a~~~g~~vvitn~v~~~~d~~~~f~~~~~~~~~~~~~~H~~~tr~~~~~~~g~~~~~k~~~s~~l~e~~~~--------~ 312 (326)
T KOG1433|consen 241 ADEFGVAVVITNQVTAQVDGAIMFGSDPKKPIGGNIWAHAVTTRLGLRKGKGERRICKIADSPCLPEAEAV--------F 312 (326)
T ss_pred HHhcCceEEEecccccccccccccCcccccccccchHHHHHHHHHHHHhccccchhhhhhcCCCCCcchhH--------H
Confidence 999999999999999998886 8888889999999999999999999998889999999999999999999 9
Q ss_pred EEeCCCccCCC
Q 047388 341 KITPGGIADAK 351 (352)
Q Consensus 341 ~I~~~Gi~~~~ 351 (352)
+|.+.|+.+..
T Consensus 313 ~i~~~g~~~~~ 323 (326)
T KOG1433|consen 313 AITEDGISDQR 323 (326)
T ss_pred HHHhhhhhhhh
Confidence 99999998854
No 15
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=100.00 E-value=1.6e-36 Score=270.81 Aligned_cols=223 Identities=33% Similarity=0.488 Sum_probs=186.7
Q ss_pred cccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcC
Q 047388 106 IKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFG 185 (352)
Q Consensus 106 ~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~ 185 (352)
++++||+++||++|+||+++|.+++|+|+||+|||+||++++.+++. .+.+|+||++| .++++++.+++..
T Consensus 3 ~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~------~~~~v~yi~~e-~~~~~r~~~~~~~-- 73 (225)
T PRK09361 3 ERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAK------NGKKVIYIDTE-GLSPERFKQIAGE-- 73 (225)
T ss_pred ccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEECC-CCCHHHHHHHHhh--
Confidence 46999999999999999999999999999999999999999999876 57899999999 7888888887765
Q ss_pred CCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 047388 186 MDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEF 265 (352)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~ 265 (352)
+++.+++++.+.++.+..++.+.+..+...+. .++++|||||++++++.++.+.++..++.+.+.+++..|+++|+++
T Consensus 74 -~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~ 151 (225)
T PRK09361 74 -DFEELLSNIIIFEPSSFEEQSEAIRKAEKLAK-ENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKH 151 (225)
T ss_pred -ChHhHhhCeEEEeCCCHHHHHHHHHHHHHHHH-hcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556788989988888887777776666554 6899999999999987654333344555566788888899999999
Q ss_pred CcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeecCCeEEEEEEeCCCCCcccccccceeeeeEEEeCC
Q 047388 266 NVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPG 345 (352)
Q Consensus 266 ~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I~~~ 345 (352)
|++||++||+....++. +.+|++|..|+|+++.++.|++..++.|.+.+.|+|..+++... +|+|+++
T Consensus 152 ~v~vi~tnq~~~~~~~~-----~~~~~gg~~~~~~~d~ii~l~~~~~~~r~~~i~k~~~~~~~~~~-------~f~It~~ 219 (225)
T PRK09361 152 DLAVVITNQVYSDIDSD-----GLRPLGGHTLEHWSKTILRLEKFRNGKRRATLEKHRSRPEGESA-------EFRITDR 219 (225)
T ss_pred CCEEEEEccceecCCCC-----cccCCCcchhhhhccEEEEEEEccCCeEEEEEEECCCCCCCCeE-------EEEEeCC
Confidence 99999999998754321 34588999999999999999997778899999999988875543 5999999
Q ss_pred CccCCC
Q 047388 346 GIADAK 351 (352)
Q Consensus 346 Gi~~~~ 351 (352)
||+.++
T Consensus 220 Gi~~~~ 225 (225)
T PRK09361 220 GIEIID 225 (225)
T ss_pred cEecCC
Confidence 998764
No 16
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=100.00 E-value=2.2e-34 Score=255.78 Aligned_cols=218 Identities=33% Similarity=0.472 Sum_probs=172.9
Q ss_pred cccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCC
Q 047388 108 ITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMD 187 (352)
Q Consensus 108 i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~ 187 (352)
++||+++||.+|+|||++|.+++|+|+||+|||+||+++|.+++. .+++|+|+++|..+. +++++++...
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~------~g~~v~yi~~e~~~~-~~~~~~~~~~--- 70 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAG------QGKKVAYIDTEGLSS-ERFRQIAGDR--- 70 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEECCCCCH-HHHHHHHhHC---
Confidence 689999999999999999999999999999999999999998875 678999999998765 6677766543
Q ss_pred cccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCc
Q 047388 188 PGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNV 267 (352)
Q Consensus 188 ~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~ 267 (352)
.+.+..++.+.++.+..++...+..+...+. .++++|||||++++++.+.........+++.+.+++..|+.+|+++++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~ 149 (218)
T cd01394 71 PERAASSIIVFEPMDFNEQGRAIQETETFAD-EKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDV 149 (218)
T ss_pred hHhhhcCEEEEeCCCHHHHHHHHHHHHHHHh-cCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2334567888888777666666666654443 358999999999998755432212234455677888899999999999
Q ss_pred EEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeecCCeEEEEEEeCCCCCcccccccceeeeeEEEeCCCc
Q 047388 268 AVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGI 347 (352)
Q Consensus 268 ~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I~~~Gi 347 (352)
+||++||++...++ .+..|.||..|+|++|++|.|++..+..|.+.+.|+|..++++.. .|+|+++||
T Consensus 150 ~vi~t~q~~~~~~~-----~~~~p~~g~~~~~~~d~~i~l~~~~~~~r~~~~~~~~~~~~~~~~-------~f~It~~Gi 217 (218)
T cd01394 150 AVVITNQVYSDVGS-----GSVRPLGGHTLEHWSKVILRLEKLRVGTRRAVLEKHRFRPEGSSV-------YFRITDKGI 217 (218)
T ss_pred EEEEecCCEEcCCC-----CcccccCCcchhcceeEEEEEEEcCCCeEEEEEeeCCCCCCCceE-------EEEEeCCcc
Confidence 99999999875532 234688999999999999999987766676667788887766533 599999998
Q ss_pred c
Q 047388 348 A 348 (352)
Q Consensus 348 ~ 348 (352)
+
T Consensus 218 ~ 218 (218)
T cd01394 218 E 218 (218)
T ss_pred C
Confidence 5
No 17
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=100.00 E-value=2.4e-33 Score=247.50 Aligned_cols=209 Identities=34% Similarity=0.547 Sum_probs=174.0
Q ss_pred hHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCccccccc
Q 047388 115 LDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDN 194 (352)
Q Consensus 115 LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~ 194 (352)
||++|+||+|+|.+++|+|+||+|||+||++++.+.+. .+.+|+||++|. +++.++.++++.+ ++.+.++
T Consensus 1 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~------~g~~v~yi~~e~-~~~~rl~~~~~~~---~~~~~~~ 70 (209)
T TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAAR------QGKKVVYIDTEG-LSPERFKQIAEDR---PERALSN 70 (209)
T ss_pred ChhhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEECCC-CCHHHHHHHHHhC---hHHHhcC
Confidence 79999999999999999999999999999999998875 578999999998 8899999988765 4455688
Q ss_pred EEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcc
Q 047388 195 IIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQ 274 (352)
Q Consensus 195 i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h 274 (352)
+.++++.+..++...+..+...+...++++|||||++++++.+..+. ...|.+.+.+++..|+++++++++++|+|||
T Consensus 71 i~~~~~~~~~~~~~~~~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~--~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 71 FIVFEVFDFDEQGVAIQKTSKFIDRDSASLVVVDSFTALYRLELSDD--RISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhhcCccEEEEeCcHHHhHHHhCCc--cHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 99999988888877777777777777899999999999987654332 1244456677888899999999999999999
Q ss_pred cccCCCCCcccCCCCCCCcchhhhhccceEEEEEeecCCeEEEEEEeCCCCCcccccccceeeeeEEEeCCCcc
Q 047388 275 VIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIA 348 (352)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I~~~Gi~ 348 (352)
+....++ ....|++|..|++++|+++.|++.+ ..|.+.+.|+|..+.+... .|.|+++||+
T Consensus 149 ~~~~~~~-----~~~~~~gg~~~~~~~d~vi~l~~~~-~~r~~~i~k~~~~~~~~~~-------~f~It~~Gi~ 209 (209)
T TIGR02237 149 VYTDVNN-----GTLRPLGGHLLEHWSKVILRLEKFR-GRRLATLEKHRSRPEGESV-------YFRITDDGIE 209 (209)
T ss_pred cEEecCC-----CCCcCCCcchhheeeeEEEEEEecC-CEEEEEEEECCCCCCCCeE-------EEEEeCCccC
Confidence 9865432 2245899999999999999999874 5688889999998875433 5999999985
No 18
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-34 Score=262.48 Aligned_cols=261 Identities=21% Similarity=0.325 Sum_probs=207.0
Q ss_pred CCCchhhhhcCChhhHHhhhCCCHHH--HHHHHHHH-------HHHhhcCC--CchhhhHH-hhhcccccccCChhhHHh
Q 047388 51 GIYTCNGLMMHTKKHLTGIKGLSEAK--VEKICEAA-------EKIVNFGY--ITGSDALL-RRKAVIKITTGSQALDEL 118 (352)
Q Consensus 51 g~~t~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~-------~~~~~~~~--~~~~~~~~-~~~~~~~i~TG~~~LD~~ 118 (352)
-.+.|.+|...+++|+.+|.++..+. ++...... ......+- .....+.+ ...+..+++||+.+||++
T Consensus 6 t~f~C~~CG~~s~KW~GkCp~Cg~Wns~vE~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~Ri~tg~~EldRV 85 (456)
T COG1066 6 TAFVCQECGYVSPKWLGKCPACGAWNTLVEEVLAASPGGAPNKRRSGKAGSEPSKVLKLSDIELEEEPRISTGIEELDRV 85 (456)
T ss_pred cEEEcccCCCCCccccccCCCCCCccceEEeeccccccccccccccccccCCcccceeeccceeeecccccCChHHHHhh
Confidence 45789999999999999999998653 11110000 00000000 00011111 234567999999999999
Q ss_pred hcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEE
Q 047388 119 LGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYA 198 (352)
Q Consensus 119 L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~ 198 (352)
||||+-+|++++|.|+||.|||||++|++...+. .+ +|+|+++|.+ ..+++.++++++++. +++++.
T Consensus 86 LGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~------~~-~vLYVsGEES--~~QiklRA~RL~~~~----~~l~l~ 152 (456)
T COG1066 86 LGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK------RG-KVLYVSGEES--LQQIKLRADRLGLPT----NNLYLL 152 (456)
T ss_pred hcCCcccccEEEEccCCCCCHHHHHHHHHHHHHh------cC-cEEEEeCCcC--HHHHHHHHHHhCCCc----cceEEe
Confidence 9999999999999999999999999999998875 34 9999999988 777899999999876 788888
Q ss_pred ecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCC-CcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 199 RAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTG-RGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 199 ~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~-~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
...+.++... .+.+.+|+++|||||+.++.++..+ .|..+| +++....|.++||+.|++++++.|+++
T Consensus 153 aEt~~e~I~~-------~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQ----VRe~t~~L~~~AK~~~i~~fiVGHVTK 221 (456)
T COG1066 153 AETNLEDIIA-------ELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQ----VREVAAELMRLAKTKNIAIFIVGHVTK 221 (456)
T ss_pred hhcCHHHHHH-------HHHhcCCCEEEEeccceeecccccCCCCcHHH----HHHHHHHHHHHHHHcCCeEEEEEEEcc
Confidence 7777665443 3445789999999999999987653 355543 468999999999999999999999999
Q ss_pred CCCCCcccCCCCCCCcchhhhhccceEEEEEeecC-CeEEEEEEeCCCCCcccccccceeeeeEEEeCCCccCCCC
Q 047388 278 DPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKG-EQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIADAKD 352 (352)
Q Consensus 278 ~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~-~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I~~~Gi~~~~~ 352 (352)
+|. .||.+.++|++|++++|+.+++ ..|+++-+|||+++.++. +.|+.+++|++.+.+
T Consensus 222 --eG~--------IAGPrvLEHmVDtVlyFEGd~~~~~RiLR~vKNRFG~t~Ei-------GvFeM~~~GL~eV~n 280 (456)
T COG1066 222 --EGA--------IAGPRVLEHMVDTVLYFEGDRHSRYRILRSVKNRFGATNEL-------GVFEMTENGLREVSN 280 (456)
T ss_pred --ccc--------ccCchheeeeeeEEEEEeccCCCceeeeehhcccCCcccce-------eEEEEecCCeeEecC
Confidence 776 8999999999999999998654 679999999999999987 479999999998754
No 19
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=100.00 E-value=2.2e-32 Score=252.13 Aligned_cols=242 Identities=30% Similarity=0.384 Sum_probs=186.5
Q ss_pred HHHHHHHhhcCCCchhhhH---HhhhcccccccCChhhHHhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCcc
Q 047388 81 CEAAEKIVNFGYITGSDAL---LRRKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNM 156 (352)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~TG~~~LD~~L~-GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~ 156 (352)
++.+.+.....|..++-+. .......+++||++.||.+|+ ||+|+|.+|+|+||||+|||+||++++.+++.
T Consensus 6 ~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~---- 81 (325)
T cd00983 6 LELALKQIEKKFGKGSIMKLGDDAVQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK---- 81 (325)
T ss_pred HHHHHHHHHHHhCCcceEECccccccCCceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH----
Confidence 3334444444444444332 123467899999999999999 99999999999999999999999999999886
Q ss_pred CCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchh-
Q 047388 157 RGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFR- 235 (352)
Q Consensus 157 gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~- 235 (352)
.++.|+|||+|+.+++. .++++|++. +++.+.++.+.++....+. ..+.+..+++|||||++++++
T Consensus 82 --~g~~~vyId~E~~~~~~----~a~~lGvd~----~~l~v~~p~~~eq~l~i~~---~li~s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 82 --LGGTVAFIDAEHALDPV----YAKKLGVDL----DNLLISQPDTGEQALEIAD---SLVRSGAVDLIVVDSVAALVPK 148 (325)
T ss_pred --cCCCEEEECccccHHHH----HHHHcCCCH----HHheecCCCCHHHHHHHHH---HHHhccCCCEEEEcchHhhccc
Confidence 68899999999987764 677888886 6788888888777665554 345567899999999999986
Q ss_pred cccCCCc---chHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec-
Q 047388 236 VDFTGRG---ELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK- 311 (352)
Q Consensus 236 ~~~~~~g---~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~- 311 (352)
.++.++. ....+.+.+.+.++.|..+++++++++|+|||+...++ .+| +++..+.||..|.|.+..|+.+++..
T Consensus 149 ~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~ig-~~~-g~~e~~~GG~~L~~~ss~rl~lrk~~~ 226 (325)
T cd00983 149 AEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQLREKIG-VMF-GNPETTTGGNALKFYSSVRLDIRRIET 226 (325)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ccc-CCCccCCCchHHhhhcceEEEEEeecc
Confidence 4554321 11223345678889999999999999999999998653 344 57788999999999999999999853
Q ss_pred --------CCeEEEEEEeCCCCCcccccccceeeeeEEEeC-CCcc
Q 047388 312 --------GEQRVCKVFDAPNLPEAEAISFSYHIILIKITP-GGIA 348 (352)
Q Consensus 312 --------~~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I~~-~Gi~ 348 (352)
|..+.++++||+..|+.... +|.|.= .||.
T Consensus 227 ~k~~~~~~G~~~~~~v~Knk~~~p~~~~-------~~~i~~~~Gi~ 265 (325)
T cd00983 227 IKDGDEVIGNRTKVKVVKNKVAPPFKTA-------EFDILFGEGIS 265 (325)
T ss_pred cccCCcccccEEEEEEEecccCCCCCce-------EEEEEcCcccc
Confidence 34578999999999886543 476653 3664
No 20
>PRK09354 recA recombinase A; Provisional
Probab=100.00 E-value=4.2e-32 Score=251.92 Aligned_cols=244 Identities=30% Similarity=0.392 Sum_probs=189.7
Q ss_pred HHHHHHHHhhcCCCchhhhH--H-hhhcccccccCChhhHHhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCc
Q 047388 80 ICEAAEKIVNFGYITGSDAL--L-RRKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTN 155 (352)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~i~TG~~~LD~~L~-GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~ 155 (352)
.++.+.+.....|..++-+. + ......+++||++.||.+|+ ||+|+|.+|+|+||+||||||||++++.+++.
T Consensus 10 ~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~--- 86 (349)
T PRK09354 10 ALEAALKQIEKQFGKGSIMRLGDDAAMDVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK--- 86 (349)
T ss_pred HHHHHHHHHHHHhCCCCceEcccccccCCceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH---
Confidence 44444444444554443332 1 12357799999999999999 99999999999999999999999999999886
Q ss_pred cCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchh
Q 047388 156 MRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFR 235 (352)
Q Consensus 156 ~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~ 235 (352)
.++.|+|||+|+.+++. .++++|++. +++.+.++.+.++....+. ..+.+..+++|||||++++++
T Consensus 87 ---~G~~~~yId~E~s~~~~----~a~~lGvdl----d~lli~qp~~~Eq~l~i~~---~li~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 87 ---AGGTAAFIDAEHALDPV----YAKKLGVDI----DNLLVSQPDTGEQALEIAD---TLVRSGAVDLIVVDSVAALVP 152 (349)
T ss_pred ---cCCcEEEECCccchHHH----HHHHcCCCH----HHeEEecCCCHHHHHHHHH---HHhhcCCCCEEEEeChhhhcc
Confidence 68999999999987763 678889987 6788888877777655544 455667899999999999985
Q ss_pred -cccCCCc---chHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec
Q 047388 236 -VDFTGRG---ELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK 311 (352)
Q Consensus 236 -~~~~~~g---~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~ 311 (352)
.++.++. ....+.+.+.+.++.|..+++++++++|+|||+...++ .+| +++..|.||+.+.|.+.+|+.++|..
T Consensus 153 ~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQvr~~ig-~~~-g~pe~~~GG~aL~~~ss~rl~lrr~~ 230 (349)
T PRK09354 153 KAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFINQIREKIG-VMF-GNPETTTGGNALKFYASVRLDIRRIG 230 (349)
T ss_pred hhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEEeeeeccc-ccc-CCCCcCCCchhhHhhheeeeEEeccc
Confidence 5554431 11223345667788899999999999999999998653 334 67788999999999999999999853
Q ss_pred ---------CCeEEEEEEeCCCCCcccccccceeeeeEEEe-CCCccC
Q 047388 312 ---------GEQRVCKVFDAPNLPEAEAISFSYHIILIKIT-PGGIAD 349 (352)
Q Consensus 312 ---------~~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I~-~~Gi~~ 349 (352)
|..+.++++|++..|+.... .|.|. .+||.-
T Consensus 231 ~iK~~~~~~G~~~r~~vvKnk~~~p~~~a-------~~~i~~~~Gi~~ 271 (349)
T PRK09354 231 TIKDGDEVIGNRTKVKVVKNKVAPPFKQA-------EFDIMYGEGISR 271 (349)
T ss_pred ccccCCceecceEEEEEEecccCCCCCce-------EEEEEcCCccch
Confidence 34568999999999886443 48888 888864
No 21
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=100.00 E-value=2e-32 Score=275.59 Aligned_cols=217 Identities=28% Similarity=0.459 Sum_probs=183.5
Q ss_pred hhcccccccCChhhHHhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHH
Q 047388 102 RKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPI 180 (352)
Q Consensus 102 ~~~~~~i~TG~~~LD~~L~-GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~ 180 (352)
+.+...++||++.||.+|+ ||+++|.+++|+|++|+|||+||++++.+++. .+++|+||++|+++++. +
T Consensus 35 ~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~------~G~~v~yId~E~t~~~~----~ 104 (790)
T PRK09519 35 RQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA------AGGVAAFIDAEHALDPD----Y 104 (790)
T ss_pred ccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEECCccchhHH----H
Confidence 4567799999999999998 99999999999999999999999999998876 68899999999997754 7
Q ss_pred HHHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccch-hcccCCCc---chHHHHHHHHHHHH
Q 047388 181 AERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALF-RVDFTGRG---ELADRQQKLGQMLS 256 (352)
Q Consensus 181 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~-~~~~~~~g---~~~~r~~~l~~i~~ 256 (352)
++++|++. +++.+.++.+.++.... +...+.+.++++|||||+++++ +.++.|+. .+..+++.+.++++
T Consensus 105 A~~lGvDl----~~llv~~~~~~E~~l~~---i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~ 177 (790)
T PRK09519 105 AKKLGVDT----DSLLVSQPDTGEQALEI---ADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALR 177 (790)
T ss_pred HHHcCCCh----hHeEEecCCCHHHHHHH---HHHHhhcCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHH
Confidence 88899988 56778888877765544 3345566789999999999999 47776542 23444555678899
Q ss_pred HHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEee---------cCCeEEEEEEeCCCCCc
Q 047388 257 RLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKG---------KGEQRVCKVFDAPNLPE 327 (352)
Q Consensus 257 ~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~---------~~~~R~~~i~Ks~~~~~ 327 (352)
.|..+++++|+++|+|||+...++ .+| +++.+|.||+.|.|++++||.|+|. .|+.|+++|+||+++|.
T Consensus 178 ~L~~~l~~~nvtvi~TNQv~~~~g-~~f-g~p~~~~GG~~l~h~ss~Ri~lrk~~~ik~~~~~~G~~~~~kv~ks~cLpe 255 (790)
T PRK09519 178 KMTGALNNSGTTAIFINQLRDKIG-VMF-GSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRTRVKVVKNKCLAE 255 (790)
T ss_pred HHHHHHHhCCCEEEEEecceecCC-CcC-CCCCcCCCCcccceeccEEEEeeeccccccCccccceEEEEEEEECCCCCC
Confidence 999999999999999999998764 345 7889999999999999999999974 36789999999999999
Q ss_pred ccccccceeeeeEEEeCC
Q 047388 328 AEAISFSYHIILIKITPG 345 (352)
Q Consensus 328 ~~~~~~~~~~~~f~I~~~ 345 (352)
+++. |.|+.+
T Consensus 256 ~e~v--------~~i~tG 265 (790)
T PRK09519 256 GTRI--------FDPVTG 265 (790)
T ss_pred ceEE--------EEecCC
Confidence 9998 888754
No 22
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=100.00 E-value=1.4e-31 Score=246.60 Aligned_cols=221 Identities=30% Similarity=0.445 Sum_probs=178.4
Q ss_pred hcccccccCChhhHHhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHH
Q 047388 103 KAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIA 181 (352)
Q Consensus 103 ~~~~~i~TG~~~LD~~L~-GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~ 181 (352)
....++|||++.||.+|+ ||+|+|.+++|+||||+||||||++++.+++. .+++|+|||+|+.+++. .+
T Consensus 31 ~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~------~g~~v~yId~E~~~~~~----~a 100 (321)
T TIGR02012 31 MDVETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK------AGGTAAFIDAEHALDPV----YA 100 (321)
T ss_pred ccCceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEEcccchhHHH----HH
Confidence 457799999999999999 99999999999999999999999999999887 68899999999987764 57
Q ss_pred HHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchh-cccCCC-c--chHHHHHHHHHHHHH
Q 047388 182 ERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFR-VDFTGR-G--ELADRQQKLGQMLSR 257 (352)
Q Consensus 182 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~-~~~~~~-g--~~~~r~~~l~~i~~~ 257 (352)
+++|++. +++.+.++.+.++....+ ...+.+..+++|||||++++++ .++.+. + ....+.+.+.++++.
T Consensus 101 ~~lGvd~----~~l~v~~p~~~eq~l~~~---~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~ 173 (321)
T TIGR02012 101 RKLGVDI----DNLLVSQPDTGEQALEIA---ETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRK 173 (321)
T ss_pred HHcCCCH----HHeEEecCCCHHHHHHHH---HHHhhccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHH
Confidence 8889887 678888887776665444 3445566899999999999985 344432 1 112233455688899
Q ss_pred HHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec---------CCeEEEEEEeCCCCCcc
Q 047388 258 LTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK---------GEQRVCKVFDAPNLPEA 328 (352)
Q Consensus 258 L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~---------~~~R~~~i~Ks~~~~~~ 328 (352)
|..+++++|+++|+|||+...++ .+| +++..+.||..+.|.+..++.++|.. |..+.++++||+..|+.
T Consensus 174 L~~~l~~~~~tvi~tNQvr~~~g-~~~-~~~e~~~GG~aL~~~ss~r~~lrr~~~iK~~~~~~g~~~~~~v~Knk~~~p~ 251 (321)
T TIGR02012 174 LTGALSKSNTTAIFINQIREKIG-VMF-GNPETTTGGRALKFYASVRLDIRRIGQVKQGEEVVGNRTKVKVVKNKVAPPF 251 (321)
T ss_pred HHHHHHhCCCEEEEEecceeccC-ccc-CCCccCcCccHHHHHHhHhHhhhhhhccccCCceeccEEEEEEEECCCCCCC
Confidence 99999999999999999998653 334 56778999999999999999998742 25678999999999886
Q ss_pred cccccceeeeeEEEe-CCCccC
Q 047388 329 EAISFSYHIILIKIT-PGGIAD 349 (352)
Q Consensus 329 ~~~~~~~~~~~f~I~-~~Gi~~ 349 (352)
... +|.|. .+||.-
T Consensus 252 ~~~-------~~~i~~~~Gi~~ 266 (321)
T TIGR02012 252 KEA-------EFDILYGEGISK 266 (321)
T ss_pred Cce-------EEEEEcCCccch
Confidence 543 59988 888864
No 23
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.97 E-value=8.8e-31 Score=247.68 Aligned_cols=259 Identities=22% Similarity=0.330 Sum_probs=191.2
Q ss_pred CchhhhhcCChhhHHhhhCCCHHHH-HHHHHHHHHHhh----cCC--CchhhhHH-hhhcccccccCChhhHHhhcCCCC
Q 047388 53 YTCNGLMMHTKKHLTGIKGLSEAKV-EKICEAAEKIVN----FGY--ITGSDALL-RRKAVIKITTGSQALDELLGGGIE 124 (352)
Q Consensus 53 ~t~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~----~~~--~~~~~~~~-~~~~~~~i~TG~~~LD~~L~GGl~ 124 (352)
+.|.+|...+++++.+|.++..++- .+-......... ... .....+.+ ......+++||+++||++|+||++
T Consensus 1 ~~c~~cg~~~~~~~g~cp~c~~w~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~TGi~eLD~vLgGGi~ 80 (372)
T cd01121 1 YVCSECGYVSPKWLGKCPECGEWNTLVEEIEPSSSSGSGGRSSGGSASKVIPLSDIEAEEEERIPTGIEELDRVLGGGLV 80 (372)
T ss_pred CCCCCCCCCCCCccEECcCCCCceeeeehhccccccccccccccccCCCceEhhhccccccCccccCCHHHHHhhcCCcc
Confidence 3577888889999999988876531 110000000000 000 11111111 123457899999999999999999
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYE 204 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~ 204 (352)
+|++++|.|+||+|||+|+++++.+... .+++|+|+++|++ ...+...+++++++. +++.+....+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~------~g~~VlYvs~EEs--~~qi~~Ra~rlg~~~----~~l~l~~e~~le 148 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAK------RGGKVLYVSGEES--PEQIKLRADRLGIST----ENLYLLAETNLE 148 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHh------cCCeEEEEECCcC--HHHHHHHHHHcCCCc----ccEEEEccCcHH
Confidence 9999999999999999999999988765 5679999999976 566777888888876 566666554443
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcccccchhcccCC-CcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCc
Q 047388 205 HQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTG-RGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGV 283 (352)
Q Consensus 205 ~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~-~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~ 283 (352)
.+. +.+...++++|||||++.++..+..+ .+... .+.+++..|.++++++++++|+++|+++ ++.
T Consensus 149 ~I~-------~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~----qvr~~~~~L~~lak~~~itvilvghvtk--~g~- 214 (372)
T cd01121 149 DIL-------ASIEELKPDLVIIDSIQTVYSSELTSAPGSVS----QVRECTAELMRFAKERNIPIFIVGHVTK--EGS- 214 (372)
T ss_pred HHH-------HHHHhcCCcEEEEcchHHhhccccccCCCCHH----HHHHHHHHHHHHHHHcCCeEEEEeeccC--CCc-
Confidence 322 33345689999999999998765432 22222 3567888999999999999999999987 342
Q ss_pred ccCCCCCCCcchhhhhccceEEEEEeecC-CeEEEEEEeCCCCCcccccccceeeeeEEEeCCCccCCC
Q 047388 284 FISDPKKPAGGHVLAHAVTIRLMFRKGKG-EQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIADAK 351 (352)
Q Consensus 284 ~~~~~~~~~gg~~~~~~~~~~i~L~~~~~-~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I~~~Gi~~~~ 351 (352)
.+|+..++|++|++|.|+.++. ..|+++++|+|+.+.++. +.|+|+++||+.+.
T Consensus 215 -------~aG~~~leh~vD~Vi~le~~~~~~~R~Lri~KnR~g~~~ei-------~~F~i~~~Gl~~v~ 269 (372)
T cd01121 215 -------IAGPKVLEHMVDTVLYFEGDRHSEYRILRSVKNRFGSTNEL-------GVFEMRENGLREVS 269 (372)
T ss_pred -------ccCcccchhhceEEEEEEcCCCCcEEEEEEEeCCCCCCCCE-------EEEEECCCCeEEcc
Confidence 5677899999999999998664 579999999999987764 47999999999654
No 24
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=99.97 E-value=1.7e-30 Score=235.92 Aligned_cols=217 Identities=20% Similarity=0.294 Sum_probs=167.6
Q ss_pred ccccCChhhHHhh--------------cCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCC
Q 047388 107 KITTGSQALDELL--------------GGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTF 172 (352)
Q Consensus 107 ~i~TG~~~LD~~L--------------~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~ 172 (352)
+++||++.||++| +||||+|++++|+|+||+|||+||+|++.+.+. .+.+|+|+++|++.
T Consensus 3 ~~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~------~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 3 GVPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQAS------RGNPVLFVTVESPA 76 (259)
T ss_pred CccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHh------CCCcEEEEEecCCc
Confidence 6899999999999 599999999999999999999999999998776 67899999999753
Q ss_pred C--hhhHHHHHHHcCCCcccccccEEEEecCCHH----HHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHH
Q 047388 173 R--PDRIVPIAERFGMDPGAVLDNIIYARAYTYE----HQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELAD 246 (352)
Q Consensus 173 ~--~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~ 246 (352)
. ..++...+.++|++.+.+.+++.+.+..... ...+++..+...+.+.++++|||||+++++... +
T Consensus 77 ~~~~~~l~~~a~~~g~d~~~~~~~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~-----~--- 148 (259)
T TIGR03878 77 NFVYTSLKERAKAMGVDFDKIEENIILIDAASSTELRENVPNLLATLAYAIKEYKVKNTVIDSITGLYEAK-----E--- 148 (259)
T ss_pred hHHHHHHHHHHHHcCCCHHHHhCCEEEEECCCchhhhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhcccc-----h---
Confidence 2 1356677888999887777888888765432 234455666667777899999999999875421 1
Q ss_pred HHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEee--------------cC
Q 047388 247 RQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKG--------------KG 312 (352)
Q Consensus 247 r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~--------------~~ 312 (352)
....+++..|..+++++++|+++++|.....+. +.+ .++++..+.+.+|.+|.|+.. .+
T Consensus 149 --~~~r~~~~~L~~~lk~~~~t~ll~~e~~~~~~~--~~~---~~~~~~~~~~l~D~vI~L~~~~~~~~~~~~~~~~~~~ 221 (259)
T TIGR03878 149 --MMAREIVRQLFNFMKKWYQTALFVSQKRSGHEE--LSA---EAAGGYAVSHIVDGTIVLAKQLIMSRFDASLYKKPIG 221 (259)
T ss_pred --HHHHHHHHHHHHHHHHcCCeEEEEeccccCccc--ccc---cccCCcceeEeeccEEEEeeeeccchhhhhhcccccc
Confidence 112366777888888999999999997652211 111 256666789999999999841 12
Q ss_pred -CeEEEEEEeCCCCCcccccccceeeeeEEEeCCCccCC
Q 047388 313 -EQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIADA 350 (352)
Q Consensus 313 -~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I~~~Gi~~~ 350 (352)
..|.+.|.|+|..++... |++|.|+++||..+
T Consensus 222 ~~~R~l~I~KmRg~~h~~~------~~~~~It~~Gi~~i 254 (259)
T TIGR03878 222 EIVRLFRIDGCRMCGHDTK------THVLEIDETGLVKI 254 (259)
T ss_pred ceEEEEEEEEccCCCCCCc------eeEEEEcCCceEEe
Confidence 458999999999876544 47899999998765
No 25
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.97 E-value=3.3e-30 Score=250.22 Aligned_cols=258 Identities=22% Similarity=0.330 Sum_probs=191.2
Q ss_pred CCchhhhhcCChhhHHhhhCCCHHHH-HHHHHHHHHHhhcCCCchhhhHHhhhcccccccCChhhHHhhcCCCCCCcEEE
Q 047388 52 IYTCNGLMMHTKKHLTGIKGLSEAKV-EKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITE 130 (352)
Q Consensus 52 ~~t~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~GGl~~G~i~~ 130 (352)
.+.|.+|...++++..+|..+..++- .+-................+. ...+..+++||+++||++|+||+++|++++
T Consensus 7 ~y~C~~Cg~~~~~~~g~Cp~C~~w~t~~e~~~~~~~~~~~~~~~~~~~--~~~~~~ri~TGi~~LD~~LgGGi~~Gs~~l 84 (446)
T PRK11823 7 AYVCQECGAESPKWLGRCPECGAWNTLVEEVAASKAGSSKPVQPLSDI--EAEEEPRISTGIGELDRVLGGGLVPGSVVL 84 (446)
T ss_pred eEECCcCCCCCcccCeeCcCCCCccceeeecccccccCCCCceehhhc--ccccCCcccCCcHHHHHHhcCCccCCEEEE
Confidence 46789999999999999998876531 110000000000011111111 123457899999999999999999999999
Q ss_pred EecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCHHHHHHHH
Q 047388 131 AFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLL 210 (352)
Q Consensus 131 I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 210 (352)
|+|+||+|||||++|++.+.+. .+++|+|+++|++ ...+...+++++++. +++.+....+.+.+
T Consensus 85 I~G~pG~GKTtL~lq~a~~~a~------~g~~vlYvs~Ees--~~qi~~ra~rlg~~~----~~l~~~~e~~l~~i---- 148 (446)
T PRK11823 85 IGGDPGIGKSTLLLQVAARLAA------AGGKVLYVSGEES--ASQIKLRAERLGLPS----DNLYLLAETNLEAI---- 148 (446)
T ss_pred EECCCCCCHHHHHHHHHHHHHh------cCCeEEEEEcccc--HHHHHHHHHHcCCCh----hcEEEeCCCCHHHH----
Confidence 9999999999999999998774 5789999999987 556777788899876 45666655444332
Q ss_pred HHHHHHhhcCCceEEEEcccccchhcccCC-CcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCC
Q 047388 211 LGLAAKMSEEPFRLLIVDSVIALFRVDFTG-RGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPK 289 (352)
Q Consensus 211 ~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~-~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~ 289 (352)
.+.+.+.++++|||||++.++..++.+ .++. ..+.+++..|.++++++++++++++|+++ ++.
T Consensus 149 ---~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~----~qvr~~~~~L~~~ak~~~itvilv~hvtk--~~~------- 212 (446)
T PRK11823 149 ---LATIEEEKPDLVVIDSIQTMYSPELESAPGSV----SQVRECAAELMRLAKQRGIAVFLVGHVTK--EGA------- 212 (446)
T ss_pred ---HHHHHhhCCCEEEEechhhhccccccCCCCCH----HHHHHHHHHHHHHHHHcCCEEEEEeeccC--CCC-------
Confidence 233445689999999999998765532 1222 23457888899999999999999999987 332
Q ss_pred CCCcchhhhhccceEEEEEee-cCCeEEEEEEeCCCCCcccccccceeeeeEEEeCCCccCCC
Q 047388 290 KPAGGHVLAHAVTIRLMFRKG-KGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIADAK 351 (352)
Q Consensus 290 ~~~gg~~~~~~~~~~i~L~~~-~~~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I~~~Gi~~~~ 351 (352)
.+|+..|+|++|+++.|+.+ ....|.++++|+|+.+.++. +.|+|+++||+.+.
T Consensus 213 -~ag~~~lehlvD~Vi~le~~~~~~~R~l~i~K~R~g~~~e~-------~~f~it~~Gi~~v~ 267 (446)
T PRK11823 213 -IAGPRVLEHMVDTVLYFEGDRHSRYRILRAVKNRFGATNEI-------GVFEMTEQGLREVS 267 (446)
T ss_pred -cCCcchhhhhCeEEEEEEcCCCCceEEEEEccCCCCCCCce-------EEEEEcCCCceECC
Confidence 45667899999999999863 34679999999999988764 35999999998654
No 26
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.97 E-value=3.5e-30 Score=250.08 Aligned_cols=260 Identities=20% Similarity=0.286 Sum_probs=192.1
Q ss_pred CCchhhhhcCChhhHHhhhCCCHHHHHHH-HHH---HH--HHhh---cCC---CchhhhHH-hhhcccccccCChhhHHh
Q 047388 52 IYTCNGLMMHTKKHLTGIKGLSEAKVEKI-CEA---AE--KIVN---FGY---ITGSDALL-RRKAVIKITTGSQALDEL 118 (352)
Q Consensus 52 ~~t~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~---~~--~~~~---~~~---~~~~~~~~-~~~~~~~i~TG~~~LD~~ 118 (352)
.+.|.+|.+.+++++.+|.++..++-..- ... .. .... ... .....+.+ ...+..+++||+++||++
T Consensus 7 ~y~C~~Cg~~~~~~~g~Cp~C~~w~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~TGi~~LD~v 86 (454)
T TIGR00416 7 KFVCQHCGADSPKWQGKCPACHAWNTITEERLHRSLGAQKNRRNSGKAGIPQAQKSQTISAIELEEVPRFSSGFGELDRV 86 (454)
T ss_pred eEECCcCCCCCccccEECcCCCCccccchhhcccccccccccccccccccccCccceEhhhccccccCccccCcHHHHHH
Confidence 56789999999999999999876541111 000 00 0000 000 00111111 123467899999999999
Q ss_pred hcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEE
Q 047388 119 LGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYA 198 (352)
Q Consensus 119 L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~ 198 (352)
|+||+++|++++|+|+||+|||||++|++.+... .+++|+|+++|++ ...+...+++++++. +++++.
T Consensus 87 LgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~------~g~kvlYvs~EEs--~~qi~~ra~rlg~~~----~~l~~~ 154 (454)
T TIGR00416 87 LGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAK------NQMKVLYVSGEES--LQQIKMRAIRLGLPE----PNLYVL 154 (454)
T ss_pred hcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHh------cCCcEEEEECcCC--HHHHHHHHHHcCCCh----HHeEEc
Confidence 9999999999999999999999999999988765 4678999999987 556777888888876 577776
Q ss_pred ecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCC-CcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 199 RAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTG-RGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 199 ~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~-~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
...+.+. +...+.+.++++|||||++.++..+..+ .++.. .+.+++..|.++|+++|+|+++++|+++
T Consensus 155 ~e~~~~~-------I~~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~----q~r~~~~~L~~~ak~~giTvllt~hvtk 223 (454)
T TIGR00416 155 SETNWEQ-------ICANIEEENPQACVIDSIQTLYSPDISSAPGSVS----QVRECTAELMRLAKTRGIAIFIVGHVTK 223 (454)
T ss_pred CCCCHHH-------HHHHHHhcCCcEEEEecchhhcccccccCCCCHH----HHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 5554432 3334455689999999999998765432 22222 2357788899999999999999999987
Q ss_pred CCCCCcccCCCCCCCcchhhhhccceEEEEEeecC-CeEEEEEEeCCCCCcccccccceeeeeEEEeCCCccCCC
Q 047388 278 DPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKG-EQRVCKVFDAPNLPEAEAISFSYHIILIKITPGGIADAK 351 (352)
Q Consensus 278 ~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~-~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I~~~Gi~~~~ 351 (352)
++. .+|...++|++|++|.|+..++ ..|.++++|+|..+.++. +.|+|++.||+.+.
T Consensus 224 --eg~--------~aG~~~le~lvD~VI~Le~~~~~~~R~L~v~K~R~g~~~e~-------~~f~it~~Gl~~v~ 281 (454)
T TIGR00416 224 --EGS--------IAGPKVLEHMVDTVLYFEGDRDSRFRILRSVKNRFGATNEI-------GIFEMTEQGLREVL 281 (454)
T ss_pred --CCc--------cCCcccEeeeceEEEEEeccCCCcEEEEEEecCCCCCCCcE-------EEEEEecCCceecC
Confidence 442 4566789999999999997653 579999999999888654 47999999998654
No 27
>PRK04328 hypothetical protein; Provisional
Probab=99.97 E-value=2.5e-29 Score=227.18 Aligned_cols=209 Identities=19% Similarity=0.234 Sum_probs=163.4
Q ss_pred cccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcC
Q 047388 106 IKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFG 185 (352)
Q Consensus 106 ~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~ 185 (352)
++++||++.||++|+||+|+|++++|.|+||+|||+||++++.+.+. .+.+++|+++|.+ +..+.+.++++|
T Consensus 3 ~rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~------~ge~~lyis~ee~--~~~i~~~~~~~g 74 (249)
T PRK04328 3 KRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ------MGEPGVYVALEEH--PVQVRRNMRQFG 74 (249)
T ss_pred ceecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHh------cCCcEEEEEeeCC--HHHHHHHHHHcC
Confidence 46999999999999999999999999999999999999999998776 6889999999986 777899999999
Q ss_pred CCcccccc--cEEEEecCC----------------HHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHH
Q 047388 186 MDPGAVLD--NIIYARAYT----------------YEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADR 247 (352)
Q Consensus 186 ~~~~~~~~--~i~~~~~~~----------------~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r 247 (352)
++.+.+.+ ++.+.+.+. .....+++..+...+.+.+++++||||++.++..+. ...
T Consensus 75 ~d~~~~~~~~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~~~-----~~~- 148 (249)
T PRK04328 75 WDVRKYEEEGKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLTKP-----AMA- 148 (249)
T ss_pred CCHHHHhhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcCCh-----HHH-
Confidence 98765543 355554432 233445566667777777899999999999864211 112
Q ss_pred HHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec--C-CeEEEEEEeCCC
Q 047388 248 QQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK--G-EQRVCKVFDAPN 324 (352)
Q Consensus 248 ~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~--~-~~R~~~i~Ks~~ 324 (352)
.+++..|.++++++|+|+++|+|+... .. +.++..+++.+|.+|.|+... + ..|.+.|.|+|.
T Consensus 149 ----r~~~~~l~~~lk~~g~t~llt~e~~~~--~~--------~~~~~~~~~~~D~vI~L~~~~~~~~~~R~l~I~K~Rg 214 (249)
T PRK04328 149 ----RSIVMQLKRVLSGLGCTAIFVSQVSVG--ER--------GFGGPGVEHAVDGIIRLDLDEIDGELKRSLIVWKMRG 214 (249)
T ss_pred ----HHHHHHHHHHHHhCCCEEEEEECcccc--cc--------ccCCCCcEEEEEEEEEEEEEecCCcEEEEEEEEEccC
Confidence 255677777788999999999998752 11 233455688999999998643 2 368999999999
Q ss_pred CCcccccccceeeeeEEEeCCCcc
Q 047388 325 LPEAEAISFSYHIILIKITPGGIA 348 (352)
Q Consensus 325 ~~~~~~~~~~~~~~~f~I~~~Gi~ 348 (352)
.++... |++|.|+++||+
T Consensus 215 ~~~~~~------~~~~~It~~Gi~ 232 (249)
T PRK04328 215 TKHSMR------RHPFEITDKGIV 232 (249)
T ss_pred CCCCCc------eEEEEEcCCCEE
Confidence 887654 367999999986
No 28
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=99.97 E-value=4.4e-29 Score=224.24 Aligned_cols=208 Identities=19% Similarity=0.225 Sum_probs=161.2
Q ss_pred ccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCC
Q 047388 107 KITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGM 186 (352)
Q Consensus 107 ~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~ 186 (352)
+++||++.||++|+||+|+|++++|.|+||+|||+|++|++...+. .+.+++|+++|.+ +..+.+.++++|+
T Consensus 2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~------~ge~~lyvs~ee~--~~~i~~~~~~~g~ 73 (237)
T TIGR03877 2 RVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ------MGEPGIYVALEEH--PVQVRRNMAQFGW 73 (237)
T ss_pred ccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHH------cCCcEEEEEeeCC--HHHHHHHHHHhCC
Confidence 5899999999999999999999999999999999999999988775 6889999999986 7778888889998
Q ss_pred Cccccc--ccEEEEecCC----------------HHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHH
Q 047388 187 DPGAVL--DNIIYARAYT----------------YEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQ 248 (352)
Q Consensus 187 ~~~~~~--~~i~~~~~~~----------------~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~ 248 (352)
+.+.+. .++.+.+++. .....+++..+.+.+...++++|||||++.++... ....
T Consensus 74 ~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~-----~~~~-- 146 (237)
T TIGR03877 74 DVRKYEEEGKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITK-----PAMA-- 146 (237)
T ss_pred CHHHHhhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCC-----hHHH--
Confidence 875433 2455554321 22344556666677777789999999999986421 1112
Q ss_pred HHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec---CCeEEEEEEeCCCC
Q 047388 249 QKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK---GEQRVCKVFDAPNL 325 (352)
Q Consensus 249 ~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~---~~~R~~~i~Ks~~~ 325 (352)
.+++..|+++++++|+|+|+++|..... . +.++..+++++|.+|.|+... ...|.+.|.|+|..
T Consensus 147 ---r~~l~~l~~~lk~~~~t~llt~~~~~~~-~---------~~~~~~~~~~~D~vI~L~~~~~~~~~~R~l~i~K~Rg~ 213 (237)
T TIGR03877 147 ---RSIVMQLKRVLSGLGCTSIFVSQVSVGE-R---------GFGGPGVEHAVDGIIRLDLDEIDGELKRSLIVWKMRGT 213 (237)
T ss_pred ---HHHHHHHHHHHHhCCCEEEEEECccccc-c---------cccccceEEEEeEEEEEEEEeeCCceEEEEEEEECCCC
Confidence 2567778888899999999999987521 1 223345789999999998642 24689999999998
Q ss_pred CcccccccceeeeeEEEeCCCcc
Q 047388 326 PEAEAISFSYHIILIKITPGGIA 348 (352)
Q Consensus 326 ~~~~~~~~~~~~~~f~I~~~Gi~ 348 (352)
++... |++|+|+++||+
T Consensus 214 ~~~~~------~~~~~It~~Gi~ 230 (237)
T TIGR03877 214 KHSMR------RHPFEITDKGII 230 (237)
T ss_pred CCCCc------eEEEEEcCCCEE
Confidence 87654 367999999997
No 29
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=99.96 E-value=7.7e-29 Score=221.33 Aligned_cols=208 Identities=26% Similarity=0.343 Sum_probs=156.7
Q ss_pred cccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCC-CCeEEEEeCCCCCChhhHHHHHHHcCC
Q 047388 108 ITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG-NGKVAYIDTEGTFRPDRIVPIAERFGM 186 (352)
Q Consensus 108 i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~-~~~vl~i~~e~~~~~~rl~~~~~~~~~ 186 (352)
++||++.||++|+||+|+|++++|.|+||+|||+|++|++.+.+. . +.+|+|++++.+ ++.+.+.++++|+
T Consensus 1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~------~~ge~vlyvs~ee~--~~~l~~~~~s~g~ 72 (226)
T PF06745_consen 1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLK------NFGEKVLYVSFEEP--PEELIENMKSFGW 72 (226)
T ss_dssp E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHH------HHT--EEEEESSS---HHHHHHHHHTTTS
T ss_pred CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhh------hcCCcEEEEEecCC--HHHHHHHHHHcCC
Confidence 589999999999999999999999999999999999999998877 6 899999999987 7888899999999
Q ss_pred Cccccccc--EEEEecCCH------HHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHH
Q 047388 187 DPGAVLDN--IIYARAYTY------EHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRL 258 (352)
Q Consensus 187 ~~~~~~~~--i~~~~~~~~------~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L 258 (352)
+.+.+.++ +.+.+.... .....++..+...+...++++|||||++.+... .+ +.. +..++..|
T Consensus 73 d~~~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~-~~---~~~-----~r~~l~~l 143 (226)
T PF06745_consen 73 DLEEYEDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLY-DD---PEE-----LRRFLRAL 143 (226)
T ss_dssp -HHHHHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTS-SS---GGG-----HHHHHHHH
T ss_pred cHHHHhhcCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhc-CC---HHH-----HHHHHHHH
Confidence 88766554 777765543 234455566666777778899999999999221 11 111 23667777
Q ss_pred HHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhh-ccceEEEEEeec-C--CeEEEEEEeCCCCCcccccccc
Q 047388 259 TKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAH-AVTIRLMFRKGK-G--EQRVCKVFDAPNLPEAEAISFS 334 (352)
Q Consensus 259 ~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~-~~~~~i~L~~~~-~--~~R~~~i~Ks~~~~~~~~~~~~ 334 (352)
....++++++++++.|.....+ +.....+.+ .+|.+|.|+... + ..|.++|.|+|..++...
T Consensus 144 ~~~l~~~~~t~llt~~~~~~~~----------~~~~~~i~~~l~D~vI~L~~~~~~~~~~R~l~I~K~Rg~~~~~~---- 209 (226)
T PF06745_consen 144 IKFLKSRGVTTLLTSEMPSGSE----------DDGTFGIEHYLADGVIELRYEEEGGRIRRRLRIVKMRGSRHSTG---- 209 (226)
T ss_dssp HHHHHHTTEEEEEEEEESSSSS----------SSSSTSHHHHHSSEEEEEEEEEETTEEEEEEEEEEETTS----B----
T ss_pred HHHHHHCCCEEEEEEccccCcc----------cccccchhhhcccEEEEEEEEeeCCEEEEEEEEEEcCCCCCCCc----
Confidence 8878999999999998654211 344556777 999999999643 2 468999999999886544
Q ss_pred eeeeeEEEeCCCcc
Q 047388 335 YHIILIKITPGGIA 348 (352)
Q Consensus 335 ~~~~~f~I~~~Gi~ 348 (352)
|++|+|+++||+
T Consensus 210 --~~~f~I~~~Gi~ 221 (226)
T PF06745_consen 210 --IHPFEITPGGIE 221 (226)
T ss_dssp --EEEEEEETTEEE
T ss_pred --EEEEEEECCeEE
Confidence 578999999986
No 30
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=99.95 E-value=1.3e-26 Score=213.11 Aligned_cols=208 Identities=31% Similarity=0.451 Sum_probs=157.1
Q ss_pred hcccccccCChhhHHhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHH
Q 047388 103 KAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIA 181 (352)
Q Consensus 103 ~~~~~i~TG~~~LD~~L~-GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~ 181 (352)
.....+|||++.||.+|+ ||+|+|.+++|+|++++|||+|+++++.+++. .++.|+|||.|+.+++. .+
T Consensus 29 ~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~------~g~~~a~ID~e~~ld~~----~a 98 (322)
T PF00154_consen 29 QNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK------QGGICAFIDAEHALDPE----YA 98 (322)
T ss_dssp CSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH------TT-EEEEEESSS---HH----HH
T ss_pred cccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhc------ccceeEEecCcccchhh----HH
Confidence 456789999999999998 99999999999999999999999999998876 68899999999998876 67
Q ss_pred HHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhc-ccCC---CcchHHHHHHHHHHHHH
Q 047388 182 ERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRV-DFTG---RGELADRQQKLGQMLSR 257 (352)
Q Consensus 182 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~-~~~~---~g~~~~r~~~l~~i~~~ 257 (352)
+++|++. +++.+.++.+.++...+.++ .++...+++|||||+.++.+. +..+ ...++.+.+.+.++++.
T Consensus 99 ~~lGvdl----~rllv~~P~~~E~al~~~e~---lirsg~~~lVVvDSv~al~p~~E~e~~~~~~~~g~~Ar~ms~~lr~ 171 (322)
T PF00154_consen 99 ESLGVDL----DRLLVVQPDTGEQALWIAEQ---LIRSGAVDLVVVDSVAALVPKAELEGEIGDQQVGLQARLMSQALRK 171 (322)
T ss_dssp HHTT--G----GGEEEEE-SSHHHHHHHHHH---HHHTTSESEEEEE-CTT-B-HHHHTTSTSSTSSSHHHHHHHHHHHH
T ss_pred HhcCccc----cceEEecCCcHHHHHHHHHH---HhhcccccEEEEecCcccCCHHHHhhccccccCcchHHHHHHHHHH
Confidence 7789998 78888888877766655544 455567899999999999763 2222 12344566788999999
Q ss_pred HHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec---------CCeEEEEEEeCCCCCcc
Q 047388 258 LTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK---------GEQRVCKVFDAPNLPEA 328 (352)
Q Consensus 258 L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~---------~~~R~~~i~Ks~~~~~~ 328 (352)
|..++.+.++++|++||++..++ .+| +++....||+.|.|.+++||.+++.. |..-.++++||+..|+.
T Consensus 172 lt~~l~~~~~~~i~INQ~R~~ig-~~~-g~~~~t~GG~alkfyas~rl~i~k~~~ik~~~~~iG~~~~vkv~KnKva~P~ 249 (322)
T PF00154_consen 172 LTPLLSKSNTTLIFINQVRDKIG-VMF-GNPETTPGGRALKFYASVRLEIRKKEQIKEGDEVIGNKIKVKVVKNKVAPPF 249 (322)
T ss_dssp HHHHHHTTT-EEEEEEEESSSSS-SSS-SSSSCCTSHHHHHHHCSEEEEEEEEEEEEETTCECEEEEEEEEEEESSS-TT
T ss_pred HHHHHHhhceEEEEeehHHHHHh-hcc-CCCcCCCCCchhhhhhhhHHhhhcccccccCCcccccEEEEEEEEcccCCCc
Confidence 99999999999999999998763 345 56777889999999999999999742 23456899999998775
Q ss_pred c
Q 047388 329 E 329 (352)
Q Consensus 329 ~ 329 (352)
.
T Consensus 250 k 250 (322)
T PF00154_consen 250 K 250 (322)
T ss_dssp E
T ss_pred c
Confidence 4
No 31
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.95 E-value=5.8e-26 Score=203.19 Aligned_cols=208 Identities=24% Similarity=0.293 Sum_probs=152.5
Q ss_pred ccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCC
Q 047388 107 KITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGM 186 (352)
Q Consensus 107 ~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~ 186 (352)
+++||++.||++|+||+++|++++|.|+||+|||+|+.+++.+.+. .+.+++|+++|.+ .+.+...++++++
T Consensus 1 ri~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~------~g~~~~~is~e~~--~~~i~~~~~~~g~ 72 (229)
T TIGR03881 1 RLSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR------DGDPVIYVTTEES--RESIIRQAAQFGM 72 (229)
T ss_pred CcCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh------cCCeEEEEEccCC--HHHHHHHHHHhCC
Confidence 4799999999999999999999999999999999999999987765 5679999999987 6677777888998
Q ss_pred Ccccccc--cEEEEecCCH----------HHHHHHHHHHHHHhhcC--CceEEEEcccccchhcccCCCcchHHHHHHHH
Q 047388 187 DPGAVLD--NIIYARAYTY----------EHQYNLLLGLAAKMSEE--PFRLLIVDSVIALFRVDFTGRGELADRQQKLG 252 (352)
Q Consensus 187 ~~~~~~~--~i~~~~~~~~----------~~~~~~l~~l~~~l~~~--~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~ 252 (352)
+.+.+.. ++.+.+.... ....++...+.+.+... +++++||||++.++..+ ... ..
T Consensus 73 ~~~~~~~~~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~-----~~~-----~r 142 (229)
T TIGR03881 73 DFEKAIEEGKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDK-----PAM-----AR 142 (229)
T ss_pred CHHHHhhcCCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccC-----hHH-----HH
Confidence 8765432 3444432210 11223334444444443 57899999999886421 111 13
Q ss_pred HHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec--C-CeEEEEEEeCCCCCccc
Q 047388 253 QMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK--G-EQRVCKVFDAPNLPEAE 329 (352)
Q Consensus 253 ~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~--~-~~R~~~i~Ks~~~~~~~ 329 (352)
+++..|+++++++|+|+|+++|.... +. +..+..+++.+|.+|.|+... + ..|.+.|.|+|..++..
T Consensus 143 ~~~~~l~~~l~~~~~tvil~~~~~~~--~~--------~~~~~~~~~l~D~vI~L~~~~~~~~~~R~i~i~K~R~~~~~~ 212 (229)
T TIGR03881 143 KYSYYLKRVLNRWNFTILLTSQYAIT--TS--------QAFGFGIEHVADGIIRFRKVVVDGELRRYLIVEKMRQTNHDK 212 (229)
T ss_pred HHHHHHHHHHHhCCCEEEEEeccccc--CC--------CCcccceEEEEeEEEEEEEeccCCcEEEEEEEEeccCCCCCC
Confidence 56777888889999999999996531 11 112234688999999998643 2 36899999999987765
Q ss_pred ccccceeeeeEEEeC-CCcc
Q 047388 330 AISFSYHIILIKITP-GGIA 348 (352)
Q Consensus 330 ~~~~~~~~~~f~I~~-~Gi~ 348 (352)
. |++|+|++ .||+
T Consensus 213 ~------~~~~~I~~~~Gi~ 226 (229)
T TIGR03881 213 R------AWEIDIVPGKGLV 226 (229)
T ss_pred c------eeEEEEcCCCceE
Confidence 4 37899995 7986
No 32
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=99.94 E-value=3e-25 Score=197.90 Aligned_cols=208 Identities=20% Similarity=0.282 Sum_probs=151.2
Q ss_pred CChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCccc
Q 047388 111 GSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGA 190 (352)
Q Consensus 111 G~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~ 190 (352)
|++.||++|+||+|+|++++|.|+||+|||+||++++.+.+. .+.+|+|+++|++ +..+.+.+..++++.+.
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~------~g~~~~y~s~e~~--~~~l~~~~~~~~~~~~~ 72 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLK------NGEKAMYISLEER--EERILGYAKSKGWDLED 72 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEECCCC--HHHHHHHHHHcCCChHH
Confidence 789999999999999999999999999999999999998776 6789999999986 78888899999998766
Q ss_pred cccc-EEEEecCCHH---HHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhC
Q 047388 191 VLDN-IIYARAYTYE---HQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFN 266 (352)
Q Consensus 191 ~~~~-i~~~~~~~~~---~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~ 266 (352)
..++ +.+.+..... ....+...+...+.+.+++++||||++.+... +. ....+.. .+...++.+ +++|
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~-~~---~~~~~r~---~l~~l~~~l-k~~~ 144 (224)
T TIGR03880 73 YIDKSLYIVRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLLETL-FD---DDAERRT---ELFRFYSSL-RETG 144 (224)
T ss_pred HHhCCeEEEecCHHHHHhhHHHHHHHHHHHHHHhCCCEEEEcChHHHhhh-cC---CHHHHHH---HHHHHHHHH-HhCC
Confidence 5554 5555533222 12334445566667778999999999987321 11 1122222 333334444 5679
Q ss_pred cEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec-C----CeEEEEEEeCCCCCcccccccceeeeeEE
Q 047388 267 VAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK-G----EQRVCKVFDAPNLPEAEAISFSYHIILIK 341 (352)
Q Consensus 267 ~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~-~----~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~ 341 (352)
+++++++|.... +. . ...-...++.+|.++.|+... + ..|.++|.|+|+.++... |++|+
T Consensus 145 ~tvll~s~~~~~--~~-~------~~~~~~~~~l~D~vI~L~~~~~~~~~~~~r~l~v~K~Rg~~~~~~------~~~~~ 209 (224)
T TIGR03880 145 VTTILTSEADKT--NV-F------ASKYGLIEYLADGVIILKYVRNSDLRDVRLAVEVVKMRRSKHSRE------IKPYE 209 (224)
T ss_pred CEEEEEEcccCC--CC-C------ccCCCceEEEEeEEEEEeeeecccCcceEEEEEEEEccCCCCCCc------eEEEE
Confidence 999999998752 10 0 001133789999999998543 2 246799999999876544 47899
Q ss_pred EeCCCccC
Q 047388 342 ITPGGIAD 349 (352)
Q Consensus 342 I~~~Gi~~ 349 (352)
|+++||+-
T Consensus 210 i~~~Gi~v 217 (224)
T TIGR03880 210 ITDSGITV 217 (224)
T ss_pred EcCCcEEE
Confidence 99999974
No 33
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.94 E-value=1.4e-25 Score=220.91 Aligned_cols=214 Identities=19% Similarity=0.207 Sum_probs=163.6
Q ss_pred cccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH
Q 047388 104 AVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER 183 (352)
Q Consensus 104 ~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 183 (352)
...+++||+++||++|+||+++|++++|.|+||+|||+|++|++.+.+. .+.+|+|+++|.+ +..+...+++
T Consensus 241 ~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~------~ge~~~y~s~eEs--~~~i~~~~~~ 312 (484)
T TIGR02655 241 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA------NKERAILFAYEES--RAQLLRNAYS 312 (484)
T ss_pred cccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEEeeCC--HHHHHHHHHH
Confidence 3457999999999999999999999999999999999999999999876 6789999999987 7889999999
Q ss_pred cCCCccccccc--EEEEecCCH-HHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHH
Q 047388 184 FGMDPGAVLDN--IIYARAYTY-EHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTK 260 (352)
Q Consensus 184 ~~~~~~~~~~~--i~~~~~~~~-~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~ 260 (352)
+|++.+++.++ +.+...... ....+.+..+.+.+.+.++++|||||++.+... ++ ..+ ..+++..|.+
T Consensus 313 lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~~-~~----~~~----~r~~~~~l~~ 383 (484)
T TIGR02655 313 WGIDFEEMEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALARG-VS----NNA----FRQFVIGVTG 383 (484)
T ss_pred cCCChHHHhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHHh-cC----HHH----HHHHHHHHHH
Confidence 99987654332 555543221 122345556666777779999999999998653 32 111 2356777888
Q ss_pred HHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec--C-CeEEEEEEeCCCCCcccccccceee
Q 047388 261 ISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK--G-EQRVCKVFDAPNLPEAEAISFSYHI 337 (352)
Q Consensus 261 la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~--~-~~R~~~i~Ks~~~~~~~~~~~~~~~ 337 (352)
++++.|+|+++|+...... +. + +.....+++.+|++|.|+... + -.|.+.|+|+|..++....
T Consensus 384 ~lk~~~it~~~t~~~~~~~-~~-~------~~~~~~~s~l~D~ii~l~~~e~~g~~~r~i~V~K~R~~~~~~~~------ 449 (484)
T TIGR02655 384 YAKQEEITGFFTNTSDQFM-GS-H------SITDSHISTITDTILMLQYVEIRGEMSRAINVFKMRGSWHDKGI------ 449 (484)
T ss_pred HHhhCCCeEEEeecccccc-cC-C------ccCCCCeeEeeeEEEEEEEEecCCEEEEEEEEEEccCCCCCCce------
Confidence 8899999999997755321 11 0 112234688999999998653 2 3578999999999876654
Q ss_pred eeEEEeCCCcc
Q 047388 338 ILIKITPGGIA 348 (352)
Q Consensus 338 ~~f~I~~~Gi~ 348 (352)
++|+|+++||+
T Consensus 450 ~~~~It~~Gi~ 460 (484)
T TIGR02655 450 REFMISDKGPE 460 (484)
T ss_pred EEEEEcCCcEE
Confidence 78999999987
No 34
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.94 E-value=4.2e-25 Score=198.25 Aligned_cols=211 Identities=19% Similarity=0.225 Sum_probs=153.4
Q ss_pred cccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH
Q 047388 104 AVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER 183 (352)
Q Consensus 104 ~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 183 (352)
+.++++||++.||++|+||+|+|++++|+|+||+|||+|+.+++...+. .+.+|+|+++|.+ +..+...+.+
T Consensus 3 ~~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~------~g~~~~y~~~e~~--~~~~~~~~~~ 74 (234)
T PRK06067 3 KKEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK------QGKKVYVITTENT--SKSYLKQMES 74 (234)
T ss_pred CceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh------CCCEEEEEEcCCC--HHHHHHHHHH
Confidence 4567999999999999999999999999999999999999999988776 6889999999987 6667777888
Q ss_pred cCCCccccc--ccEEEEec------CCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHH
Q 047388 184 FGMDPGAVL--DNIIYARA------YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQML 255 (352)
Q Consensus 184 ~~~~~~~~~--~~i~~~~~------~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~ 255 (352)
++++..+.. ..+.+... ........++..+...+.+.+++++||||++.+... . .. ..+.+++
T Consensus 75 ~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~-~------~~--~~~~~~l 145 (234)
T PRK06067 75 VKIDISDFFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATY-A------EE--DDILNFL 145 (234)
T ss_pred CCCChhHHHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc-C------CH--HHHHHHH
Confidence 998876542 23333322 112233455566666776678999999999977431 1 11 1234666
Q ss_pred HHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec--C-CeEEEEEEeCCCCCcccccc
Q 047388 256 SRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK--G-EQRVCKVFDAPNLPEAEAIS 332 (352)
Q Consensus 256 ~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~--~-~~R~~~i~Ks~~~~~~~~~~ 332 (352)
..|+.+++ .++++++++|.....+ .....+.+++|.++.|+... + ..|.+.|.|+|..++...
T Consensus 146 ~~l~~l~~-~g~tvllt~~~~~~~~-----------~~~~~~~~l~DgvI~L~~~~~~~~~~r~l~i~K~Rg~~~~~~-- 211 (234)
T PRK06067 146 TEAKNLVD-LGKTILITLHPYAFSE-----------ELLSRIRSICDVYLKLRAEQIGGRYVKVLEVVKLRGARKTTG-- 211 (234)
T ss_pred HHHHHHHh-CCCEEEEEecCCcCCH-----------HHHHHHHhheEEEEEEEeeccCCEEeEEEEEEhhcCCCCCCC--
Confidence 66776665 5889999988643211 11234688999999998653 2 358899999998876541
Q ss_pred cceeeeeEEEeC-CCcc
Q 047388 333 FSYHIILIKITP-GGIA 348 (352)
Q Consensus 333 ~~~~~~~f~I~~-~Gi~ 348 (352)
.|++|+|++ .||+
T Consensus 212 ---~~~~~~I~~~~Gi~ 225 (234)
T PRK06067 212 ---NIISFDVDPAFGIK 225 (234)
T ss_pred ---CEEEEEEcCCCCeE
Confidence 146799998 4986
No 35
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.93 E-value=8.8e-25 Score=217.20 Aligned_cols=214 Identities=21% Similarity=0.215 Sum_probs=161.2
Q ss_pred cccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH
Q 047388 104 AVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER 183 (352)
Q Consensus 104 ~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 183 (352)
...+++||++.||++|+||+++|++++|.|+||+|||+|+.+++.+.+. .+.+|+|+++|++ +..+.+.+..
T Consensus 251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~------~g~~~~yis~e~~--~~~i~~~~~~ 322 (509)
T PRK09302 251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACR------RGERCLLFAFEES--RAQLIRNARS 322 (509)
T ss_pred ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHh------CCCcEEEEEecCC--HHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999988876 6889999999987 7778888899
Q ss_pred cCCCccccccc--EEEEecCC-HHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHH
Q 047388 184 FGMDPGAVLDN--IIYARAYT-YEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTK 260 (352)
Q Consensus 184 ~~~~~~~~~~~--i~~~~~~~-~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~ 260 (352)
+|++.+++..+ +.+..... .....+.+..+.+.+.+.++++|||||++.++.... . ..+.+++..|.+
T Consensus 323 ~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~~-----~----~~~~~~l~~l~~ 393 (509)
T PRK09302 323 WGIDLEKMEEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGGS-----L----NEFRQFVIRLTD 393 (509)
T ss_pred cCCChHHHhhcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhCC-----H----HHHHHHHHHHHH
Confidence 99987655432 33332211 112233445556666677899999999999865311 1 123467777888
Q ss_pred HHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec--C-CeEEEEEEeCCCCCcccccccceee
Q 047388 261 ISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK--G-EQRVCKVFDAPNLPEAEAISFSYHI 337 (352)
Q Consensus 261 la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~--~-~~R~~~i~Ks~~~~~~~~~~~~~~~ 337 (352)
+++++|+++|+|++......+. ......+++++|.+|.|++.. + -.|.+.|.|+|..++... |
T Consensus 394 ~~k~~~~t~l~t~~~~~~~g~~--------~~~~~~~~~l~D~vI~L~~~~~~~~~~R~l~I~K~Rg~~~~~~------~ 459 (509)
T PRK09302 394 YLKSEEITGLFTNLTPDFMGSH--------SITESHISSLTDTWILLQYVEINGEMNRALYVLKMRGSWHSNQ------I 459 (509)
T ss_pred HHHhCCCeEEEEeccccccCCC--------CCCcCceEEeeeEEEEEEEeecCCeeEEEEEEEEcCCCCCCCc------e
Confidence 8999999999999876422111 111123789999999999753 2 368999999998875433 4
Q ss_pred eeEEEeCCCcc
Q 047388 338 ILIKITPGGIA 348 (352)
Q Consensus 338 ~~f~I~~~Gi~ 348 (352)
++|+|+++||+
T Consensus 460 ~~f~It~~Gi~ 470 (509)
T PRK09302 460 REFVITDKGIH 470 (509)
T ss_pred EEEEEeCCcEE
Confidence 78999999996
No 36
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.93 E-value=1.7e-24 Score=215.10 Aligned_cols=216 Identities=20% Similarity=0.240 Sum_probs=158.1
Q ss_pred hcccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHH
Q 047388 103 KAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAE 182 (352)
Q Consensus 103 ~~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~ 182 (352)
....+++||++.||++|+||+|+|++++|+|+||+|||+|++|++.+.+.. .+.+|+||++|++ ++.+.+.+.
T Consensus 8 ~~~~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~-----~ge~~lyis~ee~--~~~i~~~~~ 80 (509)
T PRK09302 8 PGIEKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKR-----FDEPGVFVTFEES--PEDIIRNVA 80 (509)
T ss_pred CCCccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----cCCCEEEEEccCC--HHHHHHHHH
Confidence 356789999999999999999999999999999999999999999888762 2789999999987 888888999
Q ss_pred HcCCCcccccc--cEEEEecCCH---------HHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHH
Q 047388 183 RFGMDPGAVLD--NIIYARAYTY---------EHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKL 251 (352)
Q Consensus 183 ~~~~~~~~~~~--~i~~~~~~~~---------~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l 251 (352)
++|++...+.. ++.+...... .+...++..+.+.+...+++.+||||++.++... . .... +
T Consensus 81 ~~g~d~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~-d---~~~~----~ 152 (509)
T PRK09302 81 SFGWDLQKLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGF-S---NEAV----V 152 (509)
T ss_pred HcCCCHHHHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhc-c---CHHH----H
Confidence 99998766543 3555433211 1234455666777777889999999999875421 1 1111 1
Q ss_pred HHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec-C--CeEEEEEEeCCCCCcc
Q 047388 252 GQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK-G--EQRVCKVFDAPNLPEA 328 (352)
Q Consensus 252 ~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~-~--~~R~~~i~Ks~~~~~~ 328 (352)
...+..|.+.+++.|+++|+++|..... +. ...-....+.+|.++.|+... + ..|.+.|.|+|..++.
T Consensus 153 r~~l~~L~~~Lk~~g~TvLlt~~~~~~~-~~--------~~~~~~~~~laDgVI~L~~~~~~~~~~R~l~I~K~Rg~~~~ 223 (509)
T PRK09302 153 RRELRRLFAWLKQKGVTAVITGERGDEY-GP--------LTRYGVEEFVSDCVIILRNRLEGEKRTRTLRILKYRGTTHG 223 (509)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCccCc-CC--------ccccCceEEEeeEEEEEeEEccCCeEEEEEEEEECCCCCcC
Confidence 2334445555577899999999875421 11 011113467999999998642 2 3599999999988765
Q ss_pred cccccceeeeeEEEeCCCcc
Q 047388 329 EAISFSYHIILIKITPGGIA 348 (352)
Q Consensus 329 ~~~~~~~~~~~f~I~~~Gi~ 348 (352)
.. |++|+|++.||+
T Consensus 224 ~~------~~~f~I~~~Gi~ 237 (509)
T PRK09302 224 KN------EYPFTITEDGIS 237 (509)
T ss_pred Cc------cEEEEECCCcEE
Confidence 43 367999999987
No 37
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.92 E-value=2.7e-24 Score=211.81 Aligned_cols=211 Identities=18% Similarity=0.253 Sum_probs=153.2
Q ss_pred ccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCC
Q 047388 107 KITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGM 186 (352)
Q Consensus 107 ~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~ 186 (352)
+++||++.||++|+||||+|.+++|.|+||+|||+||+|++.+.+.. .+.+++||++|.+ ++.+.+.+.++|+
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~-----~ge~~lyvs~eE~--~~~l~~~~~~~G~ 74 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH-----FDEPGVFVTFEES--PQDIIKNARSFGW 74 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEEecC--HHHHHHHHHHcCC
Confidence 58999999999999999999999999999999999999999886651 2789999999976 8889999999999
Q ss_pred Cccccc--ccEEEEecCCH---------HHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHH
Q 047388 187 DPGAVL--DNIIYARAYTY---------EHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQML 255 (352)
Q Consensus 187 ~~~~~~--~~i~~~~~~~~---------~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~ 255 (352)
+.+.+. +++.+...... ..+...+..+...+...+++.|+|||+..++.. .. .....| ..+.
T Consensus 75 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~-~~--~~~~~r----~~l~ 147 (484)
T TIGR02655 75 DLQKLVDEGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQ-YD--AVSVVR----REIF 147 (484)
T ss_pred CHHHHhhcCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhh-cC--chHHHH----HHHH
Confidence 886543 23555443211 123345566667777778999999999887532 11 011112 2344
Q ss_pred HHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhh-hhccceEEEEEee-cC--CeEEEEEEeCCCCCccccc
Q 047388 256 SRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVL-AHAVTIRLMFRKG-KG--EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 256 ~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~-~~~~~~~i~L~~~-~~--~~R~~~i~Ks~~~~~~~~~ 331 (352)
+.++.+ ++.++|+|+++|..... +. .....+ ++.+|.+|.|+.. .+ ..|.++|.|+|..++...
T Consensus 148 ~Li~~L-~~~g~TvLLtsh~~~~~-~~---------~~~~~~~e~laDgVI~L~~~~~~~~~~R~l~I~K~Rgs~~~~~- 215 (484)
T TIGR02655 148 RLVARL-KQIGVTTVMTTERIEEY-GP---------IARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKG- 215 (484)
T ss_pred HHHHHH-HHCCCEEEEEecCcccc-cc---------cccCCceeEeeeeEEEEEEEecCCEEEEEEEEEECCCCCcCCc-
Confidence 444444 45799999999976521 11 011123 7899999999853 22 358999999998876543
Q ss_pred ccceeeeeEEEeCCCcc
Q 047388 332 SFSYHIILIKITPGGIA 348 (352)
Q Consensus 332 ~~~~~~~~f~I~~~Gi~ 348 (352)
|++|+|+++||+
T Consensus 216 -----~~~~~It~~Gi~ 227 (484)
T TIGR02655 216 -----EYPFTITDHGIN 227 (484)
T ss_pred -----eEEEEEcCCcEE
Confidence 467999999997
No 38
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.92 E-value=7.5e-24 Score=194.26 Aligned_cols=213 Identities=10% Similarity=0.095 Sum_probs=149.9
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH-
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER- 183 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~- 183 (352)
..+++||++.||+++ ||+++|++++|+|+||+|||+|+.+++.+++.. .+.+|+||++|++ ..++...+.+
T Consensus 10 ~~~~~tg~~~Ld~~~-gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-----~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 10 NEEVWWPFPVLNKLT-KGLRKGELIILTAGTGVGKTTFLREYALDLITQ-----HGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred ccCCCCCcceeeeee-EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-----cCceEEEEEcccC--HHHHHHHHHHH
Confidence 348999999999998 899999999999999999999999999987762 3789999999986 4444433322
Q ss_pred -cCCCcc------------------ccc--ccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCc
Q 047388 184 -FGMDPG------------------AVL--DNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRG 242 (352)
Q Consensus 184 -~~~~~~------------------~~~--~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g 242 (352)
.+.... .+. .++.+...........++..+...+..+++++||||+++.+......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~--- 158 (271)
T cd01122 82 YAGKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERA--- 158 (271)
T ss_pred HhCCCcccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCCC---
Confidence 232221 111 23555544333234455556666666779999999999998643211
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCC-cccCCC---CCCCcchhhhhccceEEEEEeecC------
Q 047388 243 ELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGG-VFISDP---KKPAGGHVLAHAVTIRLMFRKGKG------ 312 (352)
Q Consensus 243 ~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~-~~~~~~---~~~~gg~~~~~~~~~~i~L~~~~~------ 312 (352)
. ..+...+..++..|+.+|++++++|++++|+++..... ...+.+ ....|+..+.+.+|.+|.|.+...
T Consensus 159 ~-~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r~~~~e~~~~ 237 (271)
T cd01122 159 S-GDERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQAELDER 237 (271)
T ss_pred c-hhHHHHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEecCccccccC
Confidence 1 12224467889999999999999999999998743211 000011 124567789999999999997532
Q ss_pred CeEEEEEEeCCCC-Cccc
Q 047388 313 EQRVCKVFDAPNL-PEAE 329 (352)
Q Consensus 313 ~~R~~~i~Ks~~~-~~~~ 329 (352)
..|.+++.|+|.. +.+.
T Consensus 238 ~~~~i~v~K~R~~~~~g~ 255 (271)
T cd01122 238 NTTYLRILKNRFTGGTGV 255 (271)
T ss_pred CcEEEEEEeeccCCCccc
Confidence 4578999999986 5554
No 39
>PHA02542 41 41 helicase; Provisional
Probab=99.91 E-value=1.3e-23 Score=204.65 Aligned_cols=211 Identities=17% Similarity=0.120 Sum_probs=150.8
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHH--H
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIA--E 182 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~--~ 182 (352)
..+++||++.||++++||+.+|+++.|.|+||+|||+|++++|.+++. .+.+|+||+.|++ ...+..++ .
T Consensus 169 ~~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~------~g~~Vl~fSLEM~--~~ql~~Rl~a~ 240 (473)
T PHA02542 169 ANKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQ------QGYNVLYISMEMA--EEVIAKRIDAN 240 (473)
T ss_pred CCccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHh------cCCcEEEEeccCC--HHHHHHHHHHH
Confidence 568999999999999899999999999999999999999999998874 5789999999987 44443332 3
Q ss_pred HcCCCccccc-------------------ccEEEEec----CCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccC
Q 047388 183 RFGMDPGAVL-------------------DNIIYARA----YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFT 239 (352)
Q Consensus 183 ~~~~~~~~~~-------------------~~i~~~~~----~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~ 239 (352)
..+++...+. .++++... .+..++...+.++... ...++++||||+++.+-.....
T Consensus 241 ~~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~-~g~~~dlVvIDYLqL~~~~~~~ 319 (473)
T PHA02542 241 LLDVSLDDIDDLSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLK-KNFKPDVIIVDYLGICASSRLR 319 (473)
T ss_pred HcCCCHHHHhhcCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHh-cCCCCCEEEEechhhccCCccc
Confidence 3344432211 13433321 1233333333333211 1124899999999888532221
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCC--CCCCcchhhhhccceEEEEEeecC----C
Q 047388 240 GRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDP--KKPAGGHVLAHAVTIRLMFRKGKG----E 313 (352)
Q Consensus 240 ~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~--~~~~gg~~~~~~~~~~i~L~~~~~----~ 313 (352)
+. ...|+..+..+.+.||.+|++++|+||+++|+++..+.+ .+| .-..++..+++.+|.+++|.|+.. +
T Consensus 320 ~~--~~nr~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r---~dP~lsDLreSG~IEqdAD~vl~l~r~~~~~~~~ 394 (473)
T PHA02542 320 VS--SENSYTYVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDS---SDVDMSDTAESAGLPATADFMLAVIETEELAQMG 394 (473)
T ss_pred CC--CCChHHHHHHHHHHHHHHHHHhCCeEEEEEeeCcccccc---CCCcchhcccccchHhhcCEEEEEecCcccccCC
Confidence 11 134667789999999999999999999999999976543 121 124667789999999999998532 3
Q ss_pred eEEEEEEeCCCCCccc
Q 047388 314 QRVCKVFDAPNLPEAE 329 (352)
Q Consensus 314 ~R~~~i~Ks~~~~~~~ 329 (352)
...+.|.|+|++|.++
T Consensus 395 ~~eliv~KnR~G~~g~ 410 (473)
T PHA02542 395 QQLVKQLKSRYGDKNK 410 (473)
T ss_pred eEEEEEecCCCCCCCC
Confidence 4678899999999773
No 40
>PRK08760 replicative DNA helicase; Provisional
Probab=99.91 E-value=1.4e-23 Score=205.39 Aligned_cols=209 Identities=13% Similarity=0.134 Sum_probs=149.1
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHc
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERF 184 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 184 (352)
..+++||++.||+++ ||+.+|++++|+|+||+|||+|++++|.+++.. .+.+|+||+.|++ ...+..++...
T Consensus 209 ~~Gi~TG~~~LD~~t-~G~~~G~LivIaarPg~GKTafal~iA~~~a~~-----~g~~V~~fSlEMs--~~ql~~Rl~a~ 280 (476)
T PRK08760 209 ITGLPTGYNDFDAMT-AGLQPTDLIILAARPAMGKTTFALNIAEYAAIK-----SKKGVAVFSMEMS--ASQLAMRLISS 280 (476)
T ss_pred CCcccCCcHHHHHHh-cCCCCCceEEEEeCCCCChhHHHHHHHHHHHHh-----cCCceEEEeccCC--HHHHHHHHHHh
Confidence 468999999999987 789999999999999999999999999988752 4678999999987 44343332221
Q ss_pred --CCCcc----------cc---------c--ccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCC
Q 047388 185 --GMDPG----------AV---------L--DNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGR 241 (352)
Q Consensus 185 --~~~~~----------~~---------~--~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~ 241 (352)
+++.. +. + .++++.+... ....++...+++....+++++||||+++.+..+. .
T Consensus 281 ~s~i~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~-~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~~---~ 356 (476)
T PRK08760 281 NGRINAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPG-VSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPG---N 356 (476)
T ss_pred hCCCcHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEeCCCC-CCHHHHHHHHHHHHHhcCCCEEEEecHHhcCCCC---C
Confidence 12211 00 0 1344433322 1123333444445555689999999999774221 1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCC-----CcchhhhhccceEEEEEeecC----
Q 047388 242 GELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKP-----AGGHVLAHAVTIRLMFRKGKG---- 312 (352)
Q Consensus 242 g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~-----~gg~~~~~~~~~~i~L~~~~~---- 312 (352)
...|+..+.++.+.||.+|++++|+||+++|+++..+.. ..+.| .++..|++.+|++++|.|...
T Consensus 357 --~~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r----~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y~~~ 430 (476)
T PRK08760 357 --SENRATEISEISRSLKGLAKELNVPVIALSQLNRSLETR----TDKRPVMADLRESGAIEQDADMIVFIYRDDYYNKE 430 (476)
T ss_pred --CcccHHHHHHHHHHHHHHHHHhCCEEEEeeccCcccccc----CCCCCCHHHHhhccchhcCCCEEEEEechhhcccc
Confidence 134566788999999999999999999999999976543 11223 457789999999999987421
Q ss_pred -----CeEEEEEEeCCCCCccccc
Q 047388 313 -----EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 313 -----~~R~~~i~Ks~~~~~~~~~ 331 (352)
....+.|.|+|++|.+.+.
T Consensus 431 ~~~~~~~~eliiaKnR~G~~g~~~ 454 (476)
T PRK08760 431 NSPDKGLAEIIIGKHRGGPTGSCK 454 (476)
T ss_pred cccCCCceEEEEEccCCCCCceEE
Confidence 1346889999999999765
No 41
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=99.91 E-value=1.8e-23 Score=203.29 Aligned_cols=211 Identities=16% Similarity=0.187 Sum_probs=148.7
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHH--HH
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPI--AE 182 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~--~~ 182 (352)
..+++||++.||+++ ||+.+|++++|+|+||+|||+|+++++.+++.. .+.+|+||+.|++ ..++..+ +.
T Consensus 174 ~~gi~tG~~~LD~~~-~G~~~g~liviag~pg~GKT~~al~ia~~~a~~-----~g~~v~~fSlEm~--~~~l~~Rl~~~ 245 (421)
T TIGR03600 174 LTGLSTGLPKLDRLT-NGLVKGDLIVIGARPSMGKTTLALNIAENVALR-----EGKPVLFFSLEMS--AEQLGERLLAS 245 (421)
T ss_pred CcceeCCChhHHHHh-cCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCcEEEEECCCC--HHHHHHHHHHH
Confidence 468999999999998 599999999999999999999999999887742 5788999999987 5444433 33
Q ss_pred HcCCCccccc---------------------ccEEEEecCCHHHHHHHHHHHHHHhhcC-CceEEEEcccccchhcccCC
Q 047388 183 RFGMDPGAVL---------------------DNIIYARAYTYEHQYNLLLGLAAKMSEE-PFRLLIVDSVIALFRVDFTG 240 (352)
Q Consensus 183 ~~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~l~~l~~~l~~~-~~~lvvIDsl~~l~~~~~~~ 240 (352)
..+++...+. .++++..... ....++...+.+...++ ++++||||+++.+... .+
T Consensus 246 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~-~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~--~~ 322 (421)
T TIGR03600 246 KSGINTGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGG-LTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPT--RG 322 (421)
T ss_pred HcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCCEEEEecccccCCC--CC
Confidence 3343321100 1344433311 12223333333343444 6999999999988532 11
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCC--CCCcchhhhhccceEEEEEeecC------
Q 047388 241 RGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPK--KPAGGHVLAHAVTIRLMFRKGKG------ 312 (352)
Q Consensus 241 ~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~--~~~gg~~~~~~~~~~i~L~~~~~------ 312 (352)
..|...+..+.+.||.+|++++++||+++|+++..+... ...|. -..++..+++.+|++++|.|...
T Consensus 323 ----~~~~~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~~~~r~-~krp~lsdlr~Sg~Ieq~AD~v~~l~R~~~~~~~~~ 397 (421)
T TIGR03600 323 ----RDRNEELGGISRGLKALAKELDVPVVLLAQLNRGSEKRT-DKRPIMSDLRDSGAIEQDADVIGLIHREGYYDAREP 397 (421)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHhCCcEEEecccCcchhhcC-CCCCChHHHhhcCCccccCcEEEEeccccccCCccC
Confidence 234567889999999999999999999999998654320 01111 13556789999999999998531
Q ss_pred --CeEEEEEEeCCCCCccccc
Q 047388 313 --EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 313 --~~R~~~i~Ks~~~~~~~~~ 331 (352)
+...+.|.|+|++|.+.+.
T Consensus 398 ~~~~~el~v~K~R~G~~g~~~ 418 (421)
T TIGR03600 398 PAGVAELILAKNRHGPTGTVE 418 (421)
T ss_pred CCCceEEEEECCCCCCCceEE
Confidence 2346889999999998764
No 42
>PRK09165 replicative DNA helicase; Provisional
Probab=99.91 E-value=2.1e-23 Score=205.28 Aligned_cols=219 Identities=15% Similarity=0.168 Sum_probs=151.1
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCcc---------CCCCCeEEEEeCCCCCChh
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNM---------RGGNGKVAYIDTEGTFRPD 175 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~---------gg~~~~vl~i~~e~~~~~~ 175 (352)
..+++||++.||.++ ||+.+|++++|+|+||+|||+|+++++.+++..... -..+.+|+||+.|++ ..
T Consensus 197 ~~gi~TG~~~LD~~~-gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs--~~ 273 (497)
T PRK09165 197 LSGISTGLRDLDSKL-GGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMS--AE 273 (497)
T ss_pred CCcccCChHHHhhhc-CCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCC--HH
Confidence 468999999999998 799999999999999999999999999987642100 012578999999987 44
Q ss_pred hHHHH--HHHcCCCccccc---------------------ccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEccccc
Q 047388 176 RIVPI--AERFGMDPGAVL---------------------DNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIA 232 (352)
Q Consensus 176 rl~~~--~~~~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~ 232 (352)
.+..+ +...+++...+. .++++..... ....++...+++...++++++||||+++.
T Consensus 274 ql~~R~la~~s~v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~-~ti~~i~~~ir~l~~~~~~~lvvIDyLql 352 (497)
T PRK09165 274 QLATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPA-LSISQLRARARRLKRQHGLDLLVVDYLQL 352 (497)
T ss_pred HHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchHh
Confidence 44433 333344332111 0233332211 12233334444555567899999999997
Q ss_pred chhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCC--CCCcchhhhhccceEEEEEee
Q 047388 233 LFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPK--KPAGGHVLAHAVTIRLMFRKG 310 (352)
Q Consensus 233 l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~--~~~gg~~~~~~~~~~i~L~~~ 310 (352)
+...... ....|...+..+.+.||.+|++++|+||+++|+++..+.. -+..|. -..++..+++.+|++++|.|.
T Consensus 353 i~~~~~~---~~~~r~~ev~~is~~LK~lAkel~ipVi~lsQLnR~~e~r-~~krP~lsDLr~Sg~IEqdAD~v~~l~R~ 428 (497)
T PRK09165 353 IRGSSKR---SSDNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQR-DDKRPQLSDLRESGSIEQDADVVMFVYRE 428 (497)
T ss_pred ccCCCCC---CCCchHHHHHHHHHHHHHHHHHhCCeEEEeecccchhhcc-CCCCCchhhhhhccchhccCCEEEEEeeh
Confidence 7432110 0124556789999999999999999999999999976542 001111 135677899999999999874
Q ss_pred cC-------------------------CeEEEEEEeCCCCCccccc
Q 047388 311 KG-------------------------EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 311 ~~-------------------------~~R~~~i~Ks~~~~~~~~~ 331 (352)
.. ..--+.|.|+|++|.+.+.
T Consensus 429 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ivaKnR~G~~g~~~ 474 (497)
T PRK09165 429 EYYLKRKEPREGTPKHEEWQEKMEKVHNKAEVIIAKQRHGPTGTVK 474 (497)
T ss_pred hhhccccccccccchhhhhhhhhcccCCceEEEEeccCCCCCeeEE
Confidence 21 1235678999999998765
No 43
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=99.91 E-value=4.5e-23 Score=201.29 Aligned_cols=209 Identities=15% Similarity=0.178 Sum_probs=149.2
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHH--
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAE-- 182 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~-- 182 (352)
..+++||++.||+++ ||+++|++++|.|+||+|||+|+++++.+++.. .+.+|+||+.|++ +..+...+-
T Consensus 175 ~~gi~tG~~~LD~~~-~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~-----~g~~vl~~SlEm~--~~~i~~R~~~~ 246 (434)
T TIGR00665 175 ITGVPTGFTDLDKLT-SGLQPSDLIILAARPSMGKTAFALNIAENAAIK-----EGKPVAFFSLEMS--AEQLAMRMLSS 246 (434)
T ss_pred CCcccCCchhhHhhc-CCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHh-----CCCeEEEEeCcCC--HHHHHHHHHHH
Confidence 568999999999998 799999999999999999999999999987752 4678999999987 544433322
Q ss_pred HcCCCccc--------------------ccc-cEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCC
Q 047388 183 RFGMDPGA--------------------VLD-NIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGR 241 (352)
Q Consensus 183 ~~~~~~~~--------------------~~~-~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~ 241 (352)
..+++... +.+ ++++....+ ....++...+.+...++++++||||+++.+.....
T Consensus 247 ~~~v~~~~~~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~-~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~~~~~--- 322 (434)
T TIGR00665 247 ESRVDSQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDTPG-LTITELRAKARRLKREHGLGLIVIDYLQLMSGSGR--- 322 (434)
T ss_pred hcCCCHHHhccCCCCHHHHHHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCC---
Confidence 22322110 001 233332211 12334444555555667899999999988732211
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCC-----CcchhhhhccceEEEEEeecC----
Q 047388 242 GELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKP-----AGGHVLAHAVTIRLMFRKGKG---- 312 (352)
Q Consensus 242 g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~-----~gg~~~~~~~~~~i~L~~~~~---- 312 (352)
...|...+..+++.|+.+|++++|+||+++|+++..+.. ....| .++..+++.+|.+++|.+...
T Consensus 323 --~~~r~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r----~~~~p~lsdlr~Sg~ieq~aD~vi~l~r~~~~~~~ 396 (434)
T TIGR00665 323 --SENRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQR----EDKRPQLSDLRESGSIEQDADIVMFLYRDEYYNPD 396 (434)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhcc----CCCCCChHHHhhccchhhcCCEEEEeccccccCCC
Confidence 123556688999999999999999999999999865432 11123 456789999999999987531
Q ss_pred ----CeEEEEEEeCCCCCccccc
Q 047388 313 ----EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 313 ----~~R~~~i~Ks~~~~~~~~~ 331 (352)
..-.+.|.|+|+++.+.+.
T Consensus 397 ~~~~~~~~l~v~KnR~G~~g~~~ 419 (434)
T TIGR00665 397 SEDKGIAEIIIAKQRNGPTGTVK 419 (434)
T ss_pred cCCCCceEEEEecCCCCCCCeEE
Confidence 2357889999999988765
No 44
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=99.90 E-value=7.2e-23 Score=186.53 Aligned_cols=205 Identities=21% Similarity=0.302 Sum_probs=139.3
Q ss_pred ccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHH--HHHHc
Q 047388 107 KITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVP--IAERF 184 (352)
Q Consensus 107 ~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~--~~~~~ 184 (352)
+|+||++.||+++ ||+.+|+++.|+|+||+|||+|++++|.+++.. .+.+|+||+.|++ .+++.. ++...
T Consensus 1 Gi~TG~~~LD~~l-gG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~-----~~~~vly~SlEm~--~~~l~~R~la~~s 72 (259)
T PF03796_consen 1 GIPTGFPALDRLL-GGLRPGELTVIAARPGVGKTAFALQIALNAALN-----GGYPVLYFSLEMS--EEELAARLLARLS 72 (259)
T ss_dssp SB-SSTHHHHHHH-SSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHT-----TSSEEEEEESSS---HHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHh-cCCCcCcEEEEEecccCCchHHHHHHHHHHHHh-----cCCeEEEEcCCCC--HHHHHHHHHHHhh
Confidence 5899999999999 699999999999999999999999999998872 2589999999987 443333 33333
Q ss_pred CCCcc--------------------cccc-cEEEEecC--CHHHHHHHHHHHHHHhhc-CCceEEEEcccccchhcccCC
Q 047388 185 GMDPG--------------------AVLD-NIIYARAY--TYEHQYNLLLGLAAKMSE-EPFRLLIVDSVIALFRVDFTG 240 (352)
Q Consensus 185 ~~~~~--------------------~~~~-~i~~~~~~--~~~~~~~~l~~l~~~l~~-~~~~lvvIDsl~~l~~~~~~~ 240 (352)
+++.. .+.+ ++++.... +..++... +...... .++++||||+++.+-....
T Consensus 73 ~v~~~~i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~---i~~~~~~~~~~~~v~IDyl~ll~~~~~-- 147 (259)
T PF03796_consen 73 GVPYNKIRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESK---IRRLKREGKKVDVVFIDYLQLLKSEDS-- 147 (259)
T ss_dssp TSTHHHHHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHH---HHHHHHHSTTEEEEEEEEGGGSBTSCS--
T ss_pred cchhhhhhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHH---HHHHHhhccCCCEEEechHHHhcCCCC--
Confidence 33211 0111 24443332 33343333 3333334 6899999999998865431
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCC-----CcchhhhhccceEEEEEeecC---
Q 047388 241 RGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKP-----AGGHVLAHAVTIRLMFRKGKG--- 312 (352)
Q Consensus 241 ~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~-----~gg~~~~~~~~~~i~L~~~~~--- 312 (352)
. ..+...+..+++.|+.+|++++++||+++|+++..+.. .+..| .++..+++.+|++++|.+...
T Consensus 148 ~---~~~~~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~----~~~~p~l~dl~~sg~Ie~~AD~vl~l~r~~~~~~ 220 (259)
T PF03796_consen 148 S---DNRRQEIGEISRELKALAKELNIPVIALSQLNREAEDR----EDKRPSLSDLRESGAIEQDADVVLFLHRDEKYDE 220 (259)
T ss_dssp S---SCCHHHHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGS----SSCS--HHHHCSTSSHHHH-SEEEEEEEHCHCHC
T ss_pred C---CCHHHHHHHHHHHHHHHHHHcCCeEEEccccChhhhcc----cccccchhhhhhhHHHHHHHhhhhhhccchhhcc
Confidence 1 11224578999999999999999999999999853221 11233 456789999999999998531
Q ss_pred -----CeEEEEEEeCCCCCccccc
Q 047388 313 -----EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 313 -----~~R~~~i~Ks~~~~~~~~~ 331 (352)
..-.+.|.|+|+++.+.+.
T Consensus 221 ~~~~~~~~~l~v~KnR~G~~g~v~ 244 (259)
T PF03796_consen 221 DRDDKGEAELIVAKNRNGPTGTVP 244 (259)
T ss_dssp CSSCTTEEEEEEEEESSS--EEEE
T ss_pred ccCCCCeEEEEEEecCCCCCceEE
Confidence 2456889999999988665
No 45
>PRK05595 replicative DNA helicase; Provisional
Probab=99.90 E-value=1e-22 Score=198.77 Aligned_cols=209 Identities=14% Similarity=0.186 Sum_probs=150.9
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHH--HH
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPI--AE 182 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~--~~ 182 (352)
..+++||++.||.++ ||+.+|++++|.|+||+|||+|+++++.+++.. .+.+|+||+.|++ ...+..+ +.
T Consensus 181 ~~gi~tg~~~ld~~~-~G~~~g~liviaarpg~GKT~~al~ia~~~a~~-----~g~~vl~fSlEms--~~~l~~R~~a~ 252 (444)
T PRK05595 181 TTGVASGFRELDAKT-SGFQKGDMILIAARPSMGKTTFALNIAEYAALR-----EGKSVAIFSLEMS--KEQLAYKLLCS 252 (444)
T ss_pred CCcccCChHHHHHhc-CCCCCCcEEEEEecCCCChHHHHHHHHHHHHHH-----cCCcEEEEecCCC--HHHHHHHHHHH
Confidence 458999999999988 799999999999999999999999999876542 4778999999987 4444433 33
Q ss_pred HcCCCcccc-------------------c--ccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCC
Q 047388 183 RFGMDPGAV-------------------L--DNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGR 241 (352)
Q Consensus 183 ~~~~~~~~~-------------------~--~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~ 241 (352)
..+++...+ + .++++.+..+ ....++...+.+...++++++||||+++.+-...
T Consensus 253 ~~~v~~~~~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~-~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~---- 327 (444)
T PRK05595 253 EANVDMLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAG-VSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGK---- 327 (444)
T ss_pred hcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCC----
Confidence 333332111 0 1344433322 1223344444555555789999999999774211
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCC-----CcchhhhhccceEEEEEeecC----
Q 047388 242 GELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKP-----AGGHVLAHAVTIRLMFRKGKG---- 312 (352)
Q Consensus 242 g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~-----~gg~~~~~~~~~~i~L~~~~~---- 312 (352)
....|...+.++.+.||.+|++++|+||+++|+++..+.. .++.| .++..+++.+|.+++|.|..-
T Consensus 328 -~~~~r~~~v~~is~~LK~lAke~~i~vi~lsQLnR~~e~r----~~~rP~lsdlr~Sg~Ieq~AD~vl~l~r~~~~~~~ 402 (444)
T PRK05595 328 -GSESRQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQR----ADHRPMLSDLRESGSIEQDADVVMFLYRDEYYNKE 402 (444)
T ss_pred -CCccHHHHHHHHHHHHHHHHHHhCCeEEEeeccCcchhcc----CCCCCchhhhhhhcccccCCCEEEEEecccccccc
Confidence 1234666789999999999999999999999999866542 11223 456789999999999997521
Q ss_pred ----CeEEEEEEeCCCCCccccc
Q 047388 313 ----EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 313 ----~~R~~~i~Ks~~~~~~~~~ 331 (352)
..-.+.|.|+|++|.+.+.
T Consensus 403 ~~~~~~~e~iv~K~R~G~~g~~~ 425 (444)
T PRK05595 403 TEDKNVAECIIAKQRNGPTGTVK 425 (444)
T ss_pred cCCCCceEEEEEccCCCCCceEE
Confidence 2346789999999999765
No 46
>PRK06321 replicative DNA helicase; Provisional
Probab=99.90 E-value=9.8e-23 Score=198.63 Aligned_cols=212 Identities=14% Similarity=0.126 Sum_probs=150.0
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHH--H
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIA--E 182 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~--~ 182 (352)
..+++||++.||+++ ||+++|++++|+|+||+|||+|+++++.+++.. .+.+|+||+.|++ ...+..++ .
T Consensus 206 ~~Gi~tG~~~LD~~t-~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~-----~g~~v~~fSLEMs--~~ql~~Rlla~ 277 (472)
T PRK06321 206 ISGIPTHFIDLDKMI-NGFSPSNLMILAARPAMGKTALALNIAENFCFQ-----NRLPVGIFSLEMT--VDQLIHRIICS 277 (472)
T ss_pred CCccccCcHHHHHHh-cCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHh-----cCCeEEEEeccCC--HHHHHHHHHHh
Confidence 358999999999998 699999999999999999999999999987642 4678999999987 44443332 2
Q ss_pred HcCCCcc----------cc----------c-ccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCC
Q 047388 183 RFGMDPG----------AV----------L-DNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGR 241 (352)
Q Consensus 183 ~~~~~~~----------~~----------~-~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~ 241 (352)
..+++.. ++ . .++++.+. ......++...+++...++++++||||+|+.+-..... +
T Consensus 278 ~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~-~~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~-~ 355 (472)
T PRK06321 278 RSEVESKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQ-PGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGNL-R 355 (472)
T ss_pred hcCCCHHHhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCC-CCCCHHHHHHHHHHHHHhcCCCEEEEcchHHcCCCCcc-C
Confidence 2222211 00 0 12333222 11122334444445555678999999999887422110 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCC-----CcchhhhhccceEEEEEeecC----
Q 047388 242 GELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKP-----AGGHVLAHAVTIRLMFRKGKG---- 312 (352)
Q Consensus 242 g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~-----~gg~~~~~~~~~~i~L~~~~~---- 312 (352)
....|+..+.++.+.||.+|++++|+||+++|+++..++. ..+.| .++..+++.+|.+++|.|...
T Consensus 356 -~~~~r~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r----~~krP~lsDLReSG~IEqdAD~v~~l~R~~~y~~~ 430 (472)
T PRK06321 356 -NSESRQTEISEISRMLKNLARELNIPILCLSQLSRKVEDR----ANHRPMMSDLRESGSIEQDSDLVMFLLRREYYDPN 430 (472)
T ss_pred -CcchHHHHHHHHHHHHHHHHHHhCCcEEEEeecChhhhcc----CCCCCCHHHHhhcccccccCCEEEEEechhhcCCc
Confidence 1235667889999999999999999999999999976543 11233 456789999999999988421
Q ss_pred ---CeEEEEEEeCCCCCccccc
Q 047388 313 ---EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 313 ---~~R~~~i~Ks~~~~~~~~~ 331 (352)
..-.+.|.|+|++|.+.+.
T Consensus 431 ~~~~~~elivaKnR~G~~G~v~ 452 (472)
T PRK06321 431 DKPGTAELIVAKNRHGSIGSVP 452 (472)
T ss_pred CCCCceEEEEEecCCCCCceEE
Confidence 2356889999999998765
No 47
>PRK07004 replicative DNA helicase; Provisional
Probab=99.90 E-value=3.2e-22 Score=195.18 Aligned_cols=212 Identities=14% Similarity=0.108 Sum_probs=148.4
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHH--H
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIA--E 182 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~--~ 182 (352)
..+++||++.||+++ ||+++|++++|+|+||+|||+|+++++.+++.. .+.+|+||+.|++ ...+..++ .
T Consensus 193 ~~gi~TG~~~LD~~t-~G~~~g~liviaarpg~GKT~~al~ia~~~a~~-----~~~~v~~fSlEM~--~~ql~~R~la~ 264 (460)
T PRK07004 193 VTGTPTGFVDLDRMT-SGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE-----YGLPVAVFSMEMP--GTQLAMRMLGS 264 (460)
T ss_pred CCCccCCcHHhcccc-cCCCCCceEEEEeCCCCCccHHHHHHHHHHHHH-----cCCeEEEEeCCCC--HHHHHHHHHHh
Confidence 458999999999988 699999999999999999999999999987653 5788999999987 44333322 1
Q ss_pred HcCCCc----------cc----------cc-ccEEEEecCCHHHHHHHHHHHHHHhhcC-CceEEEEcccccchhcccCC
Q 047388 183 RFGMDP----------GA----------VL-DNIIYARAYTYEHQYNLLLGLAAKMSEE-PFRLLIVDSVIALFRVDFTG 240 (352)
Q Consensus 183 ~~~~~~----------~~----------~~-~~i~~~~~~~~~~~~~~l~~l~~~l~~~-~~~lvvIDsl~~l~~~~~~~ 240 (352)
.-+++. ++ +. .++++....+ ....++...+++...+. ++++||||+++.+-...
T Consensus 265 ~~~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~-~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~--- 340 (460)
T PRK07004 265 VGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGG-LNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSS--- 340 (460)
T ss_pred hcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCC---
Confidence 111111 10 10 1244432222 12233333444444444 58999999999884321
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCC--CCCcchhhhhccceEEEEEeecC------
Q 047388 241 RGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPK--KPAGGHVLAHAVTIRLMFRKGKG------ 312 (352)
Q Consensus 241 ~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~--~~~gg~~~~~~~~~~i~L~~~~~------ 312 (352)
. ...|+..+.++.+.||.+|++++|+||+++|+++..+.. -...|. -..++..+++.+|.+++|.|...
T Consensus 341 ~--~~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r-~~krP~lsDLreSg~IeqdAD~v~~l~R~~~y~~~~~ 417 (460)
T PRK07004 341 Q--GENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQR-PNKRPVMSDLRESGAIEQDADVILFIYRDEVYNPDSP 417 (460)
T ss_pred C--CCcHHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhcc-CCCCCChHHHhcchhhhhcCCEEEEeccccccCCCcC
Confidence 1 134667889999999999999999999999999976543 111111 13557789999999999998531
Q ss_pred --CeEEEEEEeCCCCCccccc
Q 047388 313 --EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 313 --~~R~~~i~Ks~~~~~~~~~ 331 (352)
..--+.|.|+|++|.+.+.
T Consensus 418 ~~g~~e~ivaKnR~G~~G~v~ 438 (460)
T PRK07004 418 DKGTAEIIIGKQRNGPIGPVR 438 (460)
T ss_pred CCCceEEEEEccCCCCCceEE
Confidence 1245789999999999765
No 48
>PRK08006 replicative DNA helicase; Provisional
Probab=99.90 E-value=2.3e-22 Score=196.18 Aligned_cols=212 Identities=14% Similarity=0.137 Sum_probs=148.8
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHH--H
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIA--E 182 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~--~ 182 (352)
..+++||++.||+++ ||+.+|++++|+|.||+|||+|++++|.+++.. .+.+|+||+.|++ ...+..++ .
T Consensus 204 ~~Gi~TG~~~LD~~~-~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~-----~g~~V~~fSlEM~--~~ql~~Rlla~ 275 (471)
T PRK08006 204 VTGVNTGYDDLNKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAML-----QDKPVLIFSLEMP--GEQIMMRMLAS 275 (471)
T ss_pred CCcccCCCHHHHHhh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----cCCeEEEEeccCC--HHHHHHHHHHH
Confidence 357999999999988 899999999999999999999999999998752 4678999999987 44333222 2
Q ss_pred HcCCC----------cc----------ccc--ccEEEEecCCHHHHHHHHHHHHHHhhcC-CceEEEEcccccchhcccC
Q 047388 183 RFGMD----------PG----------AVL--DNIIYARAYTYEHQYNLLLGLAAKMSEE-PFRLLIVDSVIALFRVDFT 239 (352)
Q Consensus 183 ~~~~~----------~~----------~~~--~~i~~~~~~~~~~~~~~l~~l~~~l~~~-~~~lvvIDsl~~l~~~~~~ 239 (352)
..+++ .+ .++ .++++.+... ....++...+++...++ ++++||||+++.+.....
T Consensus 276 ~~~v~~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~-~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~- 353 (471)
T PRK08006 276 LSRVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSG-LTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSL- 353 (471)
T ss_pred hcCCCHHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCC-
Confidence 11211 11 111 2344443321 12233333444444455 699999999998743211
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCC--CCCcchhhhhccceEEEEEeecC-----
Q 047388 240 GRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPK--KPAGGHVLAHAVTIRLMFRKGKG----- 312 (352)
Q Consensus 240 ~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~--~~~gg~~~~~~~~~~i~L~~~~~----- 312 (352)
...|+..+.++.+.||.+|++++|+||+++|+++..+.. -...|. -..++..+++.+|.+++|.|..-
T Consensus 354 ----~~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r-~dkrP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~ 428 (471)
T PRK08006 354 ----SDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQR-ADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENS 428 (471)
T ss_pred ----CCCcHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccc-CCCCCchhhhhhcCcccccCCEEEEEeccccccccc
Confidence 124556789999999999999999999999999976543 111111 12456789999999999998531
Q ss_pred ---CeEEEEEEeCCCCCccccc
Q 047388 313 ---EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 313 ---~~R~~~i~Ks~~~~~~~~~ 331 (352)
+.-.+.|.|+|++|.+.+.
T Consensus 429 ~~~g~~elivaKnR~G~~G~v~ 450 (471)
T PRK08006 429 DLKGIAEIIIGKQRNGPIGTVR 450 (471)
T ss_pred CCCCceEEEEecccCCCCceEE
Confidence 2245779999999998765
No 49
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.90 E-value=1.4e-22 Score=182.81 Aligned_cols=203 Identities=15% Similarity=0.174 Sum_probs=141.2
Q ss_pred hhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHH--HHHcCCCcccc
Q 047388 114 ALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPI--AERFGMDPGAV 191 (352)
Q Consensus 114 ~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~--~~~~~~~~~~~ 191 (352)
+||+++ ||+++|++++|+|+||+|||+|+++++.+.+.. .+.+|+||+.|++ +..+... +...+++...+
T Consensus 2 ~LD~~~-~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-----~g~~vly~s~E~~--~~~~~~r~~~~~~~~~~~~~ 73 (242)
T cd00984 2 DLDNLT-GGLQPGDLIIIAARPSMGKTAFALNIAENIAKK-----QGKPVLFFSLEMS--KEQLLQRLLASESGISLSKL 73 (242)
T ss_pred chhhhh-cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCceEEEeCCCC--HHHHHHHHHHHhcCCCHHHH
Confidence 589999 599999999999999999999999999998872 3889999999987 4444433 23445443211
Q ss_pred c---------------------ccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHH
Q 047388 192 L---------------------DNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQK 250 (352)
Q Consensus 192 ~---------------------~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~ 250 (352)
. .++++..... ....++...+......+++++||||+++.+.... . ...+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~-~----~~~~~~~ 147 (242)
T cd00984 74 RTGSLSDEDWERLAEAIGELKELPIYIDDSSS-LTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSK-K----KGNRQQE 147 (242)
T ss_pred hcCCCCHHHHHHHHHHHHHHhcCCEEEeCCCC-CCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCC-C----CCCHHHH
Confidence 1 1233322211 1223344445555566699999999999875322 1 1123345
Q ss_pred HHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCC--CCCCcchhhhhccceEEEEEeec--------CCeEEEEEE
Q 047388 251 LGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDP--KKPAGGHVLAHAVTIRLMFRKGK--------GEQRVCKVF 320 (352)
Q Consensus 251 l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~--~~~~gg~~~~~~~~~~i~L~~~~--------~~~R~~~i~ 320 (352)
+..+++.|+.+|+++|+++|+++|+++...+.. ...+ ....++..+.+.+|.+|.|.+.. ...-.+.+.
T Consensus 148 ~~~~~~~L~~la~~~~~~ii~~~q~~r~~~~~~-~~~~~~~~~~gS~~i~~~aD~vi~l~~~~~~~~~~~~~~~~~l~v~ 226 (242)
T cd00984 148 VAEISRSLKLLAKELNVPVIALSQLSRGVESRA-DKRPMLSDLRESGSIEQDADVVMFLYRDEYYNKESESKGIAEIIVA 226 (242)
T ss_pred HHHHHHHHHHHHHHhCCeEEEecccChhhhccC-CCCCCHHHHhhhcccccCCCEEEEEecccccccccCCCCceEEEEE
Confidence 679999999999999999999999987432210 0111 11345678899999999998864 234578999
Q ss_pred eCCCCCccccc
Q 047388 321 DAPNLPEAEAI 331 (352)
Q Consensus 321 Ks~~~~~~~~~ 331 (352)
|+|+++.+.+.
T Consensus 227 KnR~G~~g~~~ 237 (242)
T cd00984 227 KNRNGPTGTVE 237 (242)
T ss_pred CCCCCCCeeEE
Confidence 99999988765
No 50
>PRK05636 replicative DNA helicase; Provisional
Probab=99.90 E-value=1.4e-22 Score=198.89 Aligned_cols=214 Identities=14% Similarity=0.164 Sum_probs=149.1
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHc
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERF 184 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 184 (352)
..+++||++.||+++ ||+.+|++++|.|+||+|||+|++++|.+++.. .+.+|+||+.|++...-..+.++...
T Consensus 245 ~~Gi~TG~~~LD~~t-~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~-----~g~~v~~fSlEMs~~ql~~R~ls~~s 318 (505)
T PRK05636 245 ATGIPTGFKDLDDLT-NGLRGGQMIIVAARPGVGKSTLALDFMRSASIK-----HNKASVIFSLEMSKSEIVMRLLSAEA 318 (505)
T ss_pred CCceecChHHHhhhc-CCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEEeeCCHHHHHHHHHHHhc
Confidence 457999999999987 899999999999999999999999999887752 46789999999873222122222222
Q ss_pred CCCc----------cc----------cc-ccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcc
Q 047388 185 GMDP----------GA----------VL-DNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGE 243 (352)
Q Consensus 185 ~~~~----------~~----------~~-~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~ 243 (352)
+++. ++ +. .++++.+..+. ...++...+++...++++++||||+|+.+-.. . .
T Consensus 319 ~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~-ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~~----~-~ 392 (505)
T PRK05636 319 EVRLSDMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANL-TMMEIRSKARRLKQKHDLKLIVVDYLQLMSSG----K-R 392 (505)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCC-CHHHHHHHHHHHHHhcCCCEEEEcchHhcCCC----C-C
Confidence 2211 11 11 13444433221 12233344444555578999999999987321 1 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCC--CCCcchhhhhccceEEEEEeecC--------C
Q 047388 244 LADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPK--KPAGGHVLAHAVTIRLMFRKGKG--------E 313 (352)
Q Consensus 244 ~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~--~~~gg~~~~~~~~~~i~L~~~~~--------~ 313 (352)
...|++.+.++.+.||.+|++++|+||+++|+++..+.. ....|. -..++..+++.+|.+++|.|... .
T Consensus 393 ~~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r-~dkrP~lsDLreSG~IEqdAD~vl~l~R~~~y~~~~~~~g 471 (505)
T PRK05636 393 VESRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESR-TDKRPQLADLRESGSLEQDADMVMLLYRPDSQDKDDERAG 471 (505)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccc-CCCCCcHHHHhhcccccccCCEEEEEecccccCCccCCCC
Confidence 134567889999999999999999999999999976543 111111 12456789999999999998521 2
Q ss_pred eEEEEEEeCCCCCccccc
Q 047388 314 QRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 314 ~R~~~i~Ks~~~~~~~~~ 331 (352)
.--+.|.|+|++|.+.+.
T Consensus 472 ~~elivaK~RnG~~Gtv~ 489 (505)
T PRK05636 472 EADIILAKHRGGPIDTVQ 489 (505)
T ss_pred ceEEEEecCCCCCCceEE
Confidence 346789999999999765
No 51
>PRK05748 replicative DNA helicase; Provisional
Probab=99.89 E-value=2.7e-22 Score=196.26 Aligned_cols=210 Identities=15% Similarity=0.143 Sum_probs=148.3
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHH-HH
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIA-ER 183 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~-~~ 183 (352)
..+++||++.||+++ ||+++|++++|.|+||+|||+|+++++.+++.. .+.+|+||+.|++ ...+..++ ..
T Consensus 183 ~~gi~TG~~~LD~~~-~G~~~G~livIaarpg~GKT~~al~ia~~~a~~-----~g~~v~~fSlEms--~~~l~~R~l~~ 254 (448)
T PRK05748 183 ITGIPTGFTDLDKMT-SGLQPNDLIIVAARPSVGKTAFALNIAQNVATK-----TDKNVAIFSLEMG--AESLVMRMLCA 254 (448)
T ss_pred CCCccCChHHHHHhc-CCCCCCceEEEEeCCCCCchHHHHHHHHHHHHh-----CCCeEEEEeCCCC--HHHHHHHHHHH
Confidence 468999999999988 699999999999999999999999999987652 4779999999987 44443333 12
Q ss_pred c-CCCcc----------c----------cc-ccEEEEecCCHHHHHHHHHHHHHHhhcC-CceEEEEcccccchhcccCC
Q 047388 184 F-GMDPG----------A----------VL-DNIIYARAYTYEHQYNLLLGLAAKMSEE-PFRLLIVDSVIALFRVDFTG 240 (352)
Q Consensus 184 ~-~~~~~----------~----------~~-~~i~~~~~~~~~~~~~~l~~l~~~l~~~-~~~lvvIDsl~~l~~~~~~~ 240 (352)
. +++.. + +. .++++.... .....++...+++...++ ++++||||+++.+-.....
T Consensus 255 ~~~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~i~d~~-~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~- 332 (448)
T PRK05748 255 EGNIDAQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDDTP-GIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRS- 332 (448)
T ss_pred hcCCCHHHhhcCCCCHHHHHHHHHHHHHHhcCCEEEECCC-CCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCC-
Confidence 1 22111 0 00 123333221 112223334444555555 7999999999987422111
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCC-----CcchhhhhccceEEEEEeecC---
Q 047388 241 RGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKP-----AGGHVLAHAVTIRLMFRKGKG--- 312 (352)
Q Consensus 241 ~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~-----~gg~~~~~~~~~~i~L~~~~~--- 312 (352)
...|...+..+.+.||.+|++++|+||+++|+++..+.. ..+.| .++..+++.+|.+++|.+..-
T Consensus 333 ---~~~r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~r----~~k~p~lsdlr~Sg~Ieq~AD~v~~l~r~~~~~~ 405 (448)
T PRK05748 333 ---GENRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQR----QDKRPVMSDIRESGSIEQDADIVAFLYRDDYYDE 405 (448)
T ss_pred ---CcCHHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhhc----CCCCCChHHHHhhcchhcCCCEEEEEecccccCc
Confidence 124566789999999999999999999999999865432 11223 456788999999999987531
Q ss_pred -----CeEEEEEEeCCCCCccccc
Q 047388 313 -----EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 313 -----~~R~~~i~Ks~~~~~~~~~ 331 (352)
..-.+.|.|+|++|.+.+.
T Consensus 406 ~~~~~~~~e~~v~K~R~G~~g~~~ 429 (448)
T PRK05748 406 ETENKNTIEIIIAKQRNGPVGTVE 429 (448)
T ss_pred cccCCCceEEEEeccCCCCCceEE
Confidence 2345788999999999865
No 52
>PRK06904 replicative DNA helicase; Validated
Probab=99.89 E-value=2.5e-22 Score=196.17 Aligned_cols=209 Identities=17% Similarity=0.186 Sum_probs=148.5
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHH--HH
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPI--AE 182 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~--~~ 182 (352)
..+++||++.||+++ ||+.+|++++|+|.||+|||+|++++|.+++.. .+.+|+||+.|++ ...+..+ +.
T Consensus 201 ~~Gi~TG~~~LD~~t-~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~-----~g~~Vl~fSlEMs--~~ql~~Rlla~ 272 (472)
T PRK06904 201 VTGVTTGFTDLDKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA-----SEKPVLVFSLEMP--AEQIMMRMLAS 272 (472)
T ss_pred CCCccCChHHHHHHH-hccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh-----cCCeEEEEeccCC--HHHHHHHHHHh
Confidence 468999999999988 799999999999999999999999999988752 4678999999987 4433332 22
Q ss_pred HcCC-----------Cccc----------c--cccEEEEecCCHHHHHHHHHHHHHHhhcC-CceEEEEcccccchhccc
Q 047388 183 RFGM-----------DPGA----------V--LDNIIYARAYTYEHQYNLLLGLAAKMSEE-PFRLLIVDSVIALFRVDF 238 (352)
Q Consensus 183 ~~~~-----------~~~~----------~--~~~i~~~~~~~~~~~~~~l~~l~~~l~~~-~~~lvvIDsl~~l~~~~~ 238 (352)
..++ +.++ + ..++++.+.... ...++...+++..... ++++||||+|+.+.....
T Consensus 273 ~s~v~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~-t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~ 351 (472)
T PRK06904 273 LSRVDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGL-TPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGF 351 (472)
T ss_pred hCCCCHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCC-CHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCC
Confidence 1111 1111 1 123555433221 1223333344444443 689999999987743221
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCC-----CcchhhhhccceEEEEEeecC-
Q 047388 239 TGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKP-----AGGHVLAHAVTIRLMFRKGKG- 312 (352)
Q Consensus 239 ~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~-----~gg~~~~~~~~~~i~L~~~~~- 312 (352)
...|+..+.++.+.||.+|++++|+||+++|+++.++.. ..+.| .++..+++.+|.+++|.|..-
T Consensus 352 -----~~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r----~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y 422 (472)
T PRK06904 352 -----EDNRTLEIAEISRSLKALAKELKVPVVALSQLNRTLENR----GDKRPVNSDLRESGSIEQDADLIMFIYRDEVY 422 (472)
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHhCCeEEEEEecCchhhcc----CCCCCchHHHhhcCccccCCcEEEEEeccccc
Confidence 134666789999999999999999999999999876543 11223 456789999999999998521
Q ss_pred --------CeEEEEEEeCCCCCccccc
Q 047388 313 --------EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 313 --------~~R~~~i~Ks~~~~~~~~~ 331 (352)
..--+.|.|+|++|.+.+.
T Consensus 423 ~~~~~~~~~~~elivaKnR~G~~G~v~ 449 (472)
T PRK06904 423 NETTEDNKGVAEIIIGKQRNGPIGRVR 449 (472)
T ss_pred cCccccCCCceEEEEeccCCCCCceEE
Confidence 1245789999999998765
No 53
>PRK08506 replicative DNA helicase; Provisional
Probab=99.89 E-value=3e-22 Score=196.17 Aligned_cols=211 Identities=13% Similarity=0.160 Sum_probs=147.4
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHH--H
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIA--E 182 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~--~ 182 (352)
..+++||++.||.++ ||+++|++++|.|+||+|||+|+++++.+++. .+.+|+||+.|++ ...+..++ .
T Consensus 172 ~~Gi~TG~~~LD~~~-~G~~~G~LivIaarpg~GKT~fal~ia~~~~~------~g~~V~~fSlEMs--~~ql~~Rlla~ 242 (472)
T PRK08506 172 IIGLDTGFVELNKMT-KGFNKGDLIIIAARPSMGKTTLCLNMALKALN------QDKGVAFFSLEMP--AEQLMLRMLSA 242 (472)
T ss_pred CCcccCChHHHHhhc-CCCCCCceEEEEcCCCCChHHHHHHHHHHHHh------cCCcEEEEeCcCC--HHHHHHHHHHH
Confidence 457999999999987 89999999999999999999999999999864 5778999999987 44443332 2
Q ss_pred HcCCCccc--------------------cc-ccEEEEecCCHHHHHHHHHHHHHHhhcC-CceEEEEcccccchhcccCC
Q 047388 183 RFGMDPGA--------------------VL-DNIIYARAYTYEHQYNLLLGLAAKMSEE-PFRLLIVDSVIALFRVDFTG 240 (352)
Q Consensus 183 ~~~~~~~~--------------------~~-~~i~~~~~~~~~~~~~~l~~l~~~l~~~-~~~lvvIDsl~~l~~~~~~~ 240 (352)
..+++... +. .++++.+..+ ....++...+++...++ ++++||||+++.+....
T Consensus 243 ~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~l~I~d~~~-~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~--- 318 (472)
T PRK08506 243 KTSIPLQNLRTGDLDDDEWERLSDACDELSKKKLFVYDSGY-VNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSG--- 318 (472)
T ss_pred hcCCCHHHHhcCCCCHHHHHHHHHHHHHHHcCCeEEECCCC-CCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCC---
Confidence 23332210 11 1344443211 12233333344433333 58999999999774221
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCC--CCCcchhhhhccceEEEEEeecC----C-
Q 047388 241 RGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPK--KPAGGHVLAHAVTIRLMFRKGKG----E- 313 (352)
Q Consensus 241 ~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~--~~~gg~~~~~~~~~~i~L~~~~~----~- 313 (352)
....|+..+..+.+.||.+|++++|+||+++|+++..+... ...|. -..++..+++.+|++++|.|... .
T Consensus 319 --~~~~r~~ev~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~-~krP~lsDLreSg~IeqdAD~vl~l~R~~~y~~~~~ 395 (472)
T PRK08506 319 --NFKDRHLQISEISRGLKLLARELDIPIIALSQLNRSLESRA-DKRPMLSDLRESGAIEQDADIILFVYRDDVYKEREE 395 (472)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEeecCcchhhcc-CCCCChHHhhcchhhhhcCCEEEEEecccccccccc
Confidence 12345667889999999999999999999999999664320 01111 13557789999999999998521 0
Q ss_pred -------------------------eEEEEEEeCCCCCccccc
Q 047388 314 -------------------------QRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 314 -------------------------~R~~~i~Ks~~~~~~~~~ 331 (352)
.--+.|.|+|++|.+.+.
T Consensus 396 ~~~~~~~~~~g~~~~~~~~~~~~~~~~eliiaKnR~G~~G~v~ 438 (472)
T PRK08506 396 KEKEKKAKKEGKEERRIHFQNKSIEEAEIIIGKNRNGPTGTVK 438 (472)
T ss_pred cccccccccccccccccccccccccceEEEEecCCCCCCceEE
Confidence 134789999999988765
No 54
>PRK08840 replicative DNA helicase; Provisional
Probab=99.89 E-value=8e-22 Score=192.07 Aligned_cols=212 Identities=14% Similarity=0.147 Sum_probs=149.7
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHH--HH
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPI--AE 182 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~--~~ 182 (352)
..+++||++.||.++ ||+.+|++++|+|+||+|||+|++++|.+++.. .+.+|+||+.|++ ...+..+ +.
T Consensus 197 ~~gi~TG~~~LD~~~-~G~~~g~LiviaarPg~GKTafalnia~~~a~~-----~~~~v~~fSlEMs--~~ql~~Rlla~ 268 (464)
T PRK08840 197 VTGVDTGFTDLNKKT-AGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD-----QDKPVLIFSLEMP--AEQLMMRMLAS 268 (464)
T ss_pred CCCcCCCcHHHHHhh-cCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh-----CCCeEEEEeccCC--HHHHHHHHHHh
Confidence 458999999999988 789999999999999999999999999998752 4678999999987 4434322 22
Q ss_pred HcCCCc----------c----------ccc--ccEEEEecCCHHHHHHHHHHHHHHhhcC-CceEEEEcccccchhcccC
Q 047388 183 RFGMDP----------G----------AVL--DNIIYARAYTYEHQYNLLLGLAAKMSEE-PFRLLIVDSVIALFRVDFT 239 (352)
Q Consensus 183 ~~~~~~----------~----------~~~--~~i~~~~~~~~~~~~~~l~~l~~~l~~~-~~~lvvIDsl~~l~~~~~~ 239 (352)
..+++. + .+. .++++.+..+. ...++...+++...++ ++++||||+|+.+-....
T Consensus 269 ~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~-ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~- 346 (464)
T PRK08840 269 LSRVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGL-TPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPAL- 346 (464)
T ss_pred hCCCCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCC-CHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCC-
Confidence 222211 1 111 24555433221 1223334444444444 589999999998732211
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCC--CCCcchhhhhccceEEEEEeecC-----
Q 047388 240 GRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPK--KPAGGHVLAHAVTIRLMFRKGKG----- 312 (352)
Q Consensus 240 ~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~--~~~gg~~~~~~~~~~i~L~~~~~----- 312 (352)
...|++.+.++.+.||.+|++++|+||+++|+++..+.. -...|. -..++..+++.+|.+++|.|...
T Consensus 347 ----~~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r-~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~ 421 (464)
T PRK08840 347 ----SDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQR-ADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNPDS 421 (464)
T ss_pred ----CCchHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccc-CCCCCchHhhhhcccccccCCEEEEEecccccCCCc
Confidence 134667789999999999999999999999999976543 011111 12456789999999999998521
Q ss_pred ---CeEEEEEEeCCCCCccccc
Q 047388 313 ---EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 313 ---~~R~~~i~Ks~~~~~~~~~ 331 (352)
..-.+.|.|+|++|.+.+.
T Consensus 422 ~~~~~~elivaKnR~G~~G~v~ 443 (464)
T PRK08840 422 PLKGTAEIIIGKQRNGPIGSVR 443 (464)
T ss_pred CCCCceEEEEecccCCCCceEE
Confidence 2245789999999998765
No 55
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.89 E-value=1.8e-21 Score=173.72 Aligned_cols=210 Identities=20% Similarity=0.258 Sum_probs=145.1
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHc
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERF 184 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 184 (352)
...|.+++++||++++||+++|++++|.|+||+|||+|+++++...+. .+.+++|++++.+ +..+...+.++
T Consensus 3 ~~~~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~------~g~~~~yi~~e~~--~~~~~~~~~~~ 74 (230)
T PRK08533 3 LAKIELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQ------NGYSVSYVSTQLT--TTEFIKQMMSL 74 (230)
T ss_pred eEEEEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh------CCCcEEEEeCCCC--HHHHHHHHHHh
Confidence 346889999999999999999999999999999999999999888765 5689999999986 44555556788
Q ss_pred CCCccccc--ccEEEEecC----CHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHH
Q 047388 185 GMDPGAVL--DNIIYARAY----TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRL 258 (352)
Q Consensus 185 ~~~~~~~~--~~i~~~~~~----~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L 258 (352)
|++.+... +++.+.+.. ...+....+..+.......+++++|||+++..+.... +.. ...++.+.|
T Consensus 75 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~----d~~----~~~~l~~~l 146 (230)
T PRK08533 75 GYDINKKLISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDA----SEV----AVNDLMAFF 146 (230)
T ss_pred CCchHHHhhcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCc----chH----HHHHHHHHH
Confidence 88765432 234333321 1222233444444444445899999999998864211 111 123566677
Q ss_pred HHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeecC---CeEEEEEEeCCCCCcc-cccccc
Q 047388 259 TKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKG---EQRVCKVFDAPNLPEA-EAISFS 334 (352)
Q Consensus 259 ~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~---~~R~~~i~Ks~~~~~~-~~~~~~ 334 (352)
+.++++ |++++++++.... ... . .....+++|.+|.|+.... ..|.+.|.|+|..+.. +..
T Consensus 147 ~~l~~~-g~tvi~t~~~~~~-~~~--------~--~~~~~~~~DgvI~L~~~~~~~~~~R~i~V~KmR~~~~~~~~~--- 211 (230)
T PRK08533 147 KRISSL-NKVIILTANPKEL-DES--------V--LTILRTAATMLIRLEVKVFGGDLKNSAKIVKYNMAKGSFQKS--- 211 (230)
T ss_pred HHHHhC-CCEEEEEeccccc-ccc--------c--ceeEEEeeeEEEEEEEeecCCEEEEEEEEEEecCCccccCCE---
Confidence 777654 7788887775431 111 1 1246899999999986432 2588999999997764 322
Q ss_pred eeeeeEEEeCC-Ccc
Q 047388 335 YHIILIKITPG-GIA 348 (352)
Q Consensus 335 ~~~~~f~I~~~-Gi~ 348 (352)
.+|+|.++ ||+
T Consensus 212 ---~~f~i~~~~g~~ 223 (230)
T PRK08533 212 ---IPFRVEPKIGLA 223 (230)
T ss_pred ---EEEEEcCCccEE
Confidence 46999987 875
No 56
>PRK06749 replicative DNA helicase; Provisional
Probab=99.88 E-value=1.4e-21 Score=188.79 Aligned_cols=209 Identities=15% Similarity=0.154 Sum_probs=146.5
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHH--H
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIA--E 182 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~--~ 182 (352)
..+++||++.||+++ ||+.+|++++|+|+||+|||+|+++++.+++. .+.+|+||+.|++ ...+..++ .
T Consensus 166 ~~Gi~TG~~~LD~~t-~Gl~~G~LiiIaarPgmGKTafal~ia~~~a~------~g~~v~~fSlEMs--~~ql~~R~ls~ 236 (428)
T PRK06749 166 ITGIETGYTSLNKMT-CGLQEGDFVVLGARPSMGKTAFALNVGLHAAK------SGAAVGLFSLEMS--SKQLLKRMASC 236 (428)
T ss_pred CCCccCCcHHHHHHh-CCCCCCcEEEEEeCCCCCchHHHHHHHHHHHh------cCCCEEEEEeeCC--HHHHHHHHHHh
Confidence 467999999999987 79999999999999999999999999999875 5678999999987 44333222 2
Q ss_pred HcCCCcccc---------------------cc--cEEEEecCCHHHHHHHHHHHHHHhhcCC--ceEEEEcccccchhcc
Q 047388 183 RFGMDPGAV---------------------LD--NIIYARAYTYEHQYNLLLGLAAKMSEEP--FRLLIVDSVIALFRVD 237 (352)
Q Consensus 183 ~~~~~~~~~---------------------~~--~i~~~~~~~~~~~~~~l~~l~~~l~~~~--~~lvvIDsl~~l~~~~ 237 (352)
..+++...+ +. ++++.+..+. ...++...+++...+++ +.+||||+++.+....
T Consensus 237 ~~~i~~~~l~~~~~~l~~~e~~~~~~a~~~l~~~~i~i~d~~~~-t~~~I~~~~r~~~~~~~~~~~lvvIDyLqli~~~~ 315 (428)
T PRK06749 237 VGEVSGGRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGV-TVQDIWMQTRKLKRKHGDKKILIIVDYLQLITGDP 315 (428)
T ss_pred ccCCCHHHHhcCcccCCHHHHHHHHHHHHHHhcCCEEEECCCCC-CHHHHHHHHHHHHHhcCCCCcEEEEeChhhcCCCC
Confidence 112211100 01 2444433221 12223333344444444 5699999999774210
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCC-----CcchhhhhccceEEEEEeecC
Q 047388 238 FTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKP-----AGGHVLAHAVTIRLMFRKGKG 312 (352)
Q Consensus 238 ~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~-----~gg~~~~~~~~~~i~L~~~~~ 312 (352)
. ....|...+.++.+.||.+|++++|+||+++|+++..++. ..+.| .++..+++.+|.+++|.|...
T Consensus 316 --~--~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~r----~~krP~lsDLR~SG~IEqdAD~vl~l~R~~~ 387 (428)
T PRK06749 316 --K--HKGNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESR----QDKRPLLSDLRETGQIEQDADVIMLMYREDY 387 (428)
T ss_pred --C--CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccc----CCCCCchHhhhhcccccccCCEEEEEeeccc
Confidence 1 1134666789999999999999999999999999976543 11223 456789999999999998531
Q ss_pred --------CeEEEEEEeCCCCCccccc
Q 047388 313 --------EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 313 --------~~R~~~i~Ks~~~~~~~~~ 331 (352)
+...+.|.|+|++|.+.+.
T Consensus 388 y~~~~~~~~~~eliiaKnR~G~~G~v~ 414 (428)
T PRK06749 388 YDKETMQKEMTEIHVAKHRNGPVGSFK 414 (428)
T ss_pred ccccccCCCceEEEEecCCCCCCceEE
Confidence 2346789999999999765
No 57
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.88 E-value=3.8e-21 Score=175.28 Aligned_cols=212 Identities=23% Similarity=0.305 Sum_probs=155.7
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHc
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERF 184 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 184 (352)
..+++|||+.||++|+||+|+|.+++|+|+||+|||+|++|++.+.+. .+.+|+|++++.+ +..+.+.+.++
T Consensus 2 ~~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~------~ge~vlyvs~~e~--~~~l~~~~~~~ 73 (260)
T COG0467 2 MERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAR------EGEPVLYVSTEES--PEELLENARSF 73 (260)
T ss_pred CccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHh------cCCcEEEEEecCC--HHHHHHHHHHc
Confidence 357999999999999999999999999999999999999999999887 6899999999987 88899999999
Q ss_pred CCCccccccc--EEEEecCC------------HHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHH
Q 047388 185 GMDPGAVLDN--IIYARAYT------------YEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQK 250 (352)
Q Consensus 185 ~~~~~~~~~~--i~~~~~~~------------~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~ 250 (352)
|++.+.+.++ +.+..... ......+...+...+...+...+|+||++.+...... .. .
T Consensus 74 g~d~~~~~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~~~----~~----~ 145 (260)
T COG0467 74 GWDLEVYIEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLYLND----PA----L 145 (260)
T ss_pred CCCHHHHhhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCchHhhhcCc----hH----H
Confidence 9998755544 23322211 1123334455666666667899999999965432111 11 1
Q ss_pred HHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec---CCeE-EEEEEeCCCCC
Q 047388 251 LGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK---GEQR-VCKVFDAPNLP 326 (352)
Q Consensus 251 l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~---~~~R-~~~i~Ks~~~~ 326 (352)
...+...+.++.++++++.+++++....... . +....+.++..|.|.... ...| .+.|.|.|..+
T Consensus 146 ~r~~~~~l~~~~~~~~~t~~~~~~~~~~~~~---------~--~~~~~~~vdgvI~l~~~~~~~~~~r~~~~i~k~r~~~ 214 (260)
T COG0467 146 VRRILLLLKRFLKKLGVTSLLTTEAPVEERG---------E--SGVEEYIVDGVIRLDLKEIEGGGDRRYLRILKMRGTP 214 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccCCC---------c--cceEEEEEEEEEEEeeecccCceEEEEEEEEeccccc
Confidence 1367777888888899999998876442111 0 023445889999998642 2234 89999999987
Q ss_pred cccccccceeeeeEEEeC-CCccC
Q 047388 327 EAEAISFSYHIILIKITP-GGIAD 349 (352)
Q Consensus 327 ~~~~~~~~~~~~~f~I~~-~Gi~~ 349 (352)
+... |.+|.|++ .||.-
T Consensus 215 ~~~~------~~~~~i~~g~gi~i 232 (260)
T COG0467 215 HSLK------VIPFEITDGEGIVV 232 (260)
T ss_pred cCCc------eeceEEecCCcEEE
Confidence 6543 36799999 68864
No 58
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=99.87 E-value=2.2e-21 Score=184.08 Aligned_cols=209 Identities=17% Similarity=0.204 Sum_probs=155.9
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHH--
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAE-- 182 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~-- 182 (352)
..+++||++.||.++ +|+.+|+++.++|.||+|||+||+++|.+++.. .+.+|.+|+.|++ .+.+..++-
T Consensus 176 ~~Gi~tgf~~LD~~t-~G~~~~dLii~AaRP~mGKTafalnia~n~a~~-----~~~~v~iFSLEM~--~eql~~R~Ls~ 247 (435)
T COG0305 176 LIGVPTGFTDLDEIT-SGFRPGDLIIVAARPGMGKTALALNIALNAAAD-----GRKPVAIFSLEMS--EEQLVMRLLSS 247 (435)
T ss_pred CcccccCchhhHHHh-cCCccCCEEEEccCCCCChHHHHHHHHHHHHHh-----cCCCeEEEEccCC--HHHHHHHhhcc
Confidence 578999999999988 679999999999999999999999999998873 5667999999987 444443332
Q ss_pred HcCCCcc-------------------cccc--cEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCC
Q 047388 183 RFGMDPG-------------------AVLD--NIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGR 241 (352)
Q Consensus 183 ~~~~~~~-------------------~~~~--~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~ 241 (352)
.-+++.. ..+. ++++ .....-...++..++++...++++++++||+++.+....
T Consensus 248 ~s~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~i~I-dD~~~~si~eir~~aRrlk~~~~l~~i~iDYLqLm~~~~---- 322 (435)
T COG0305 248 ESGIESSKLRTGRLSDDEWERLIKAASELSEAPIFI-DDTPGLTITEIRSKARRLKLKHNLGLIVIDYLQLMTGGK---- 322 (435)
T ss_pred ccccchhccccccccHHHHHHHHHHHHHHhhCCeee-cCCCcCCHHHHHHHHHHHHHhcCccEEEEEEEEeecccc----
Confidence 1222210 0011 1222 222222334445566666677789999999999885432
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCC-----CCcchhhhhccceEEEEEeecC----
Q 047388 242 GELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKK-----PAGGHVLAHAVTIRLMFRKGKG---- 312 (352)
Q Consensus 242 g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~-----~~gg~~~~~~~~~~i~L~~~~~---- 312 (352)
....|++.+.++.+.|+.+|++++++||..+|+++.++.+ .+++ ...+.++++.+|.++++.|+..
T Consensus 323 -~~~~r~qevs~iSr~LK~lAkEl~vpvialSQLsR~~E~R----~dkrP~lSDLRESGsIEQDAD~VmflyRde~y~~~ 397 (435)
T COG0305 323 -KSENRKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQR----TDKRPMLSDLRESGALEQDADIVIFLHRDEAYLKD 397 (435)
T ss_pred -cchhHHHHHHHHHHHHHHHHHhcCCcEEehhhhcccchhc----cccCCccccCccCCchhhhCCEEEEEechhhccCC
Confidence 1256888999999999999999999999999999987764 1122 3456689999999999998631
Q ss_pred ----CeEEEEEEeCCCCCccccc
Q 047388 313 ----EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 313 ----~~R~~~i~Ks~~~~~~~~~ 331 (352)
...-+.|.|+|++|.+...
T Consensus 398 ~~~~g~aeiIi~K~RnGp~GtV~ 420 (435)
T COG0305 398 TPDRGEAEVIVAKNRNGPTGTVK 420 (435)
T ss_pred CCCCceEEEEEEeccCCCCceEE
Confidence 3457889999999999776
No 59
>PRK05973 replicative DNA helicase; Provisional
Probab=99.86 E-value=2.7e-20 Score=165.13 Aligned_cols=185 Identities=16% Similarity=0.123 Sum_probs=129.3
Q ss_pred hhHHhhhCCCHHHHHHHHHHHHHHhhcCCCchhhhHHhhhcccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHH
Q 047388 64 KHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLA 143 (352)
Q Consensus 64 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~ 143 (352)
+.|++-.+++..++. +.+. ...+|.+.+.+-..... +| ..|++. ||+++|++++|.|+||+|||+|+
T Consensus 15 ~~~~~~~~~~~~~~~---~~~a--~~~g~~~w~~~~~~~~~----~~---p~~~l~-GGl~~Gsl~LIaG~PG~GKT~la 81 (237)
T PRK05973 15 KLLSRAQNIPLHEAL---DRIA--AEEGFSSWSLLAAKAAA----TT---PAEELF-SQLKPGDLVLLGARPGHGKTLLG 81 (237)
T ss_pred HHHHHhcCCcHHHHH---HHHH--HHhccchHHHHHHhccC----CC---CHHHhc-CCCCCCCEEEEEeCCCCCHHHHH
Confidence 467777788765443 3322 23577776655322111 11 278855 89999999999999999999999
Q ss_pred HHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCce
Q 047388 144 HTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFR 223 (352)
Q Consensus 144 ~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 223 (352)
++++.+.+. .+.+|+||+.|++ +..+...+.++|++.++..+.+.+.... .......+.+ .....+++
T Consensus 82 lqfa~~~a~------~Ge~vlyfSlEes--~~~i~~R~~s~g~d~~~~~~~~~~d~~d-~~~~~~ii~~---l~~~~~~~ 149 (237)
T PRK05973 82 LELAVEAMK------SGRTGVFFTLEYT--EQDVRDRLRALGADRAQFADLFEFDTSD-AICADYIIAR---LASAPRGT 149 (237)
T ss_pred HHHHHHHHh------cCCeEEEEEEeCC--HHHHHHHHHHcCCChHHhccceEeecCC-CCCHHHHHHH---HHHhhCCC
Confidence 999999876 6789999999987 7788888999999887665543333221 1111222222 33345789
Q ss_pred EEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCC
Q 047388 224 LLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGG 282 (352)
Q Consensus 224 lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~ 282 (352)
+|||||++.+.... +...+..++..|+.+|+++|++||+++|+++..++.
T Consensus 150 lVVIDsLq~l~~~~---------~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e~~ 199 (237)
T PRK05973 150 LVVIDYLQLLDQRR---------EKPDLSVQVRALKSFARERGLIIVFISQIDRSFDPS 199 (237)
T ss_pred EEEEEcHHHHhhcc---------cchhHHHHHHHHHHHHHhCCCeEEEEecCccccccC
Confidence 99999999874211 011245667889999999999999999999976653
No 60
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.80 E-value=6e-18 Score=144.09 Aligned_cols=208 Identities=21% Similarity=0.297 Sum_probs=151.1
Q ss_pred ccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCC
Q 047388 107 KITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGM 186 (352)
Q Consensus 107 ~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~ 186 (352)
.+++|.++||+-||||+|-|+++.|.|+.|+|||.||.++++..+. .+.++.|++||.+ ....-.-++..++
T Consensus 9 ii~~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~------~g~~v~yvsTe~T--~refi~qm~sl~y 80 (235)
T COG2874 9 IIKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLM------NGYRVTYVSTELT--VREFIKQMESLSY 80 (235)
T ss_pred hccCCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHh------CCceEEEEEechh--HHHHHHHHHhcCC
Confidence 5899999999999999999999999999999999999999999887 7889999999987 3333333455666
Q ss_pred Cccc--ccccEEEEec------CCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHH
Q 047388 187 DPGA--VLDNIIYARA------YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRL 258 (352)
Q Consensus 187 ~~~~--~~~~i~~~~~------~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L 258 (352)
+..+ +..++.++.. .+......+++.+.+..+..+-+++||||++.+...+ ++ ..+-.++..+
T Consensus 81 dv~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-------~~--~~vl~fm~~~ 151 (235)
T COG2874 81 DVSDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-------SE--DAVLNFMTFL 151 (235)
T ss_pred CchHHHhcceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-------cH--HHHHHHHHHH
Confidence 5432 3345666553 2333444556666666666788999999999886532 12 2356889999
Q ss_pred HHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec-C--CeEEEEEEeCCCCCcccccccce
Q 047388 259 TKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK-G--EQRVCKVFDAPNLPEAEAISFSY 335 (352)
Q Consensus 259 ~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~-~--~~R~~~i~Ks~~~~~~~~~~~~~ 335 (352)
+.++. .|.+||+|-|...-.+.. -..+..+||+.+.|+... | ..+.+.++|-+..+..-..
T Consensus 152 r~l~d-~gKvIilTvhp~~l~e~~-----------~~rirs~~d~~l~L~~~~~Gg~~~~~~~i~K~~ga~~s~~~---- 215 (235)
T COG2874 152 RKLSD-LGKVIILTVHPSALDEDV-----------LTRIRSACDVYLRLRLEELGGDLIKVLEIVKYRGARKSFQN---- 215 (235)
T ss_pred HHHHh-CCCEEEEEeChhhcCHHH-----------HHHHHHhhheeEEEEhhhhCCeeeEEEEEeeecCchhhcCC----
Confidence 99986 488888888865432221 234688999999998643 2 3578899998887654221
Q ss_pred eeeeEEEeCC-Ccc
Q 047388 336 HIILIKITPG-GIA 348 (352)
Q Consensus 336 ~~~~f~I~~~-Gi~ 348 (352)
..+|+|.++ ||.
T Consensus 216 -~I~F~V~P~~Glk 228 (235)
T COG2874 216 -IISFRVEPGFGLK 228 (235)
T ss_pred -ceeEEecCCCceE
Confidence 246998876 543
No 61
>PRK07773 replicative DNA helicase; Validated
Probab=99.80 E-value=5.8e-19 Score=185.14 Aligned_cols=163 Identities=16% Similarity=0.170 Sum_probs=118.9
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH-
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER- 183 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~- 183 (352)
..+++||++.||+++ ||+++|++++|+|+||+|||+|++++|.+++.. .+.+|+||+.|++ ...+..++..
T Consensus 197 ~~Gi~TG~~~LD~l~-~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~-----~~~~V~~fSlEms--~~ql~~R~~s~ 268 (886)
T PRK07773 197 ARGVPTGFTELDAMT-NGLHPGQLIIVAARPSMGKTTFGLDFARNCAIR-----HRLAVAIFSLEMS--KEQLVMRLLSA 268 (886)
T ss_pred CCCccCChhHhcccc-CCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHh-----cCCeEEEEecCCC--HHHHHHHHHHH
Confidence 468999999999988 899999999999999999999999999998763 4678999999987 5444444332
Q ss_pred -cCCCcccc-------------------c--ccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCC
Q 047388 184 -FGMDPGAV-------------------L--DNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGR 241 (352)
Q Consensus 184 -~~~~~~~~-------------------~--~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~ 241 (352)
.+++...+ + .++++.+..+ ....++..++.+...+.++++||||+++.+-.. .
T Consensus 269 ~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~i~i~d~~~-~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~---~- 343 (886)
T PRK07773 269 EAKIKLSDMRSGRMSDDDWTRLARAMGEISEAPIFIDDTPN-LTVMEIRAKARRLRQEANLGLIVVDYLQLMTSG---K- 343 (886)
T ss_pred hcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCC---C-
Confidence 23321110 0 1233332221 123334444555555678999999999987421 1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCC
Q 047388 242 GELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGG 281 (352)
Q Consensus 242 g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~ 281 (352)
....|++.+.++.+.||.+|++++|+||+++|+++.++.
T Consensus 344 -~~~~r~~ei~~isr~LK~lAkel~vpvi~lsQLnR~~e~ 382 (886)
T PRK07773 344 -KYENRQQEVSEISRHLKLLAKELEVPVVALSQLSRGVEQ 382 (886)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHCCcEEEecccCcchhc
Confidence 123566788999999999999999999999999997644
No 62
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=99.76 E-value=2.9e-18 Score=149.14 Aligned_cols=164 Identities=24% Similarity=0.264 Sum_probs=93.9
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCC----CCCeEEEEeCCCCCChhhHHHH
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRG----GNGKVAYIDTEGTFRPDRIVPI 180 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg----~~~~vl~i~~e~~~~~~rl~~~ 180 (352)
...++++++.+|+++.|++++|+++.|+|+||+|||+|+++++...+....+-| .+.+|+|+++|++ ...+..+
T Consensus 11 ~~~~~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~r 88 (193)
T PF13481_consen 11 FEDLDTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARR 88 (193)
T ss_dssp --HHHS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHH
T ss_pred hhhccCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHH
Confidence 345889999999999999999999999999999999999999998876443322 5789999999987 5455555
Q ss_pred HHHcCCCcc-----ccc-----ccEEEEecCCHHH-HHHHHHHHHHHhhc-CCceEEEEcccccchhcccCCCcchHHHH
Q 047388 181 AERFGMDPG-----AVL-----DNIIYARAYTYEH-QYNLLLGLAAKMSE-EPFRLLIVDSVIALFRVDFTGRGELADRQ 248 (352)
Q Consensus 181 ~~~~~~~~~-----~~~-----~~i~~~~~~~~~~-~~~~l~~l~~~l~~-~~~~lvvIDsl~~l~~~~~~~~g~~~~r~ 248 (352)
+........ .+. ..+.+........ ....+.++.+.+.. .++++||||+++.+..... -..
T Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~-----~~~-- 161 (193)
T PF13481_consen 89 LRALLQDYDDDANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDE-----NSN-- 161 (193)
T ss_dssp HHHHHTTS-HHHHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-T-----T-H--
T ss_pred HHHHhcccCCccceEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCC-----CCH--
Confidence 544322211 011 1122222111111 23345566677777 6899999999999976411 111
Q ss_pred HHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 249 QKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 249 ~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
....++++.|+++|+++|++|++++|.++
T Consensus 162 ~~~~~~~~~l~~la~~~~~~vi~v~H~~K 190 (193)
T PF13481_consen 162 SAVAQLMQELKRLAKEYGVAVILVHHTNK 190 (193)
T ss_dssp HHHHHHHHHHHHHHHHH--EEEEEEEE--
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 12368999999999999999999999987
No 63
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.74 E-value=1.2e-16 Score=138.16 Aligned_cols=174 Identities=21% Similarity=0.227 Sum_probs=120.7
Q ss_pred EEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccc--cEEEEecCC---
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLD--NIIYARAYT--- 202 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~--~i~~~~~~~--- 202 (352)
+++|.|+||+|||+|+.+++...+. .+.+|+|+++|.+ ++.+.+.++++|++.+.+.+ .+.+.....
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~------~g~~v~~~s~e~~--~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~ 72 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA------RGEPGLYVTLEES--PEELIENAESLGWDLERLEDEGLLAIVDADPDEI 72 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH------CCCcEEEEECCCC--HHHHHHHHHHcCCChHHHHhcCCeEEEecCcccc
Confidence 4789999999999999999998876 6889999999987 77788888899988654322 233333211
Q ss_pred -HHHH---HHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccC
Q 047388 203 -YEHQ---YNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIAD 278 (352)
Q Consensus 203 -~~~~---~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~ 278 (352)
.... .+++..+...+...+++++|||+++.++..+ ....+ ..+.+.++.+. +.|+++|+++|....
T Consensus 73 s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~-----~~~~~----~~i~~l~~~l~-~~g~tvi~v~~~~~~ 142 (187)
T cd01124 73 GPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLME-----QSTAR----LEIRRLLFALK-RFGVTTLLTSEQSGL 142 (187)
T ss_pred chhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcC-----hHHHH----HHHHHHHHHHH-HCCCEEEEEeccccC
Confidence 1111 1334455555566789999999999886421 11111 23444444444 459999999998763
Q ss_pred CCCCcccCCCCCCCcchhhhhccceEEEEEeec-C--CeEEEEEEeCCCCCcc
Q 047388 279 PGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK-G--EQRVCKVFDAPNLPEA 328 (352)
Q Consensus 279 ~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~-~--~~R~~~i~Ks~~~~~~ 328 (352)
.+ . +.+...+.+.+|.++.|++.. + ..|.++|.|+|+.++.
T Consensus 143 ~~-~--------~~~~~~~~~~aD~ii~l~~~~~~~~~~r~l~i~K~R~~~~~ 186 (187)
T cd01124 143 EG-T--------GFGGGDVEYLVDGVIRLRLDEEGGRLRRSLSVVKMRGGPHD 186 (187)
T ss_pred CC-c--------ccCcCceeEeeeEEEEEEEEccCCEEEEEEEEEEccCCCCC
Confidence 21 1 344567899999999998753 2 3688999999988764
No 64
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.66 E-value=8.5e-15 Score=131.81 Aligned_cols=173 Identities=16% Similarity=0.244 Sum_probs=113.9
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCC------CCCeEEEEeCCCCCC--hhhHHHHHHHcCCCcccccccEEE
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRG------GNGKVAYIDTEGTFR--PDRIVPIAERFGMDPGAVLDNIIY 197 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg------~~~~vl~i~~e~~~~--~~rl~~~~~~~~~~~~~~~~~i~~ 197 (352)
|.+..|+|+||+|||+|++++|.+++.+.++.| .+++|+|++.|++.. ..|+..+...++.. .+.+++.+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~--~~~~rl~~ 78 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPD--DAGDRLFI 78 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCc--CcccceEE
Confidence 678999999999999999999999887766655 578999999998743 23444444444422 12233322
Q ss_pred E----------ecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCc
Q 047388 198 A----------RAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNV 267 (352)
Q Consensus 198 ~----------~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~ 267 (352)
. .... ......+..+.+.+...++++||||+++.+.... +... .....++..|+++++++|+
T Consensus 79 ~~g~~~~l~~~~~~~-~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~-----~~d~--~~~~~~~~~L~~~a~~~g~ 150 (239)
T cd01125 79 DSGRIQPISIAREGR-IIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVS-----ENDN--GAMDAVIKALRRIAAQTGA 150 (239)
T ss_pred eccCCCceecccCCc-ccccHHHHHHHHHHHhcCCCEEEECChHHhCCCC-----cCCH--HHHHHHHHHHHHHHHHhCC
Confidence 1 1000 0111223333334445689999999988773211 1111 1234788889999999999
Q ss_pred EEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEee
Q 047388 268 AVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKG 310 (352)
Q Consensus 268 ~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~ 310 (352)
+|++++|.++...... .......|+..|...++..+.|.+.
T Consensus 151 avl~v~H~~K~~~~~~--~~~~~~rGssal~~~~r~~~~l~~~ 191 (239)
T cd01125 151 AILLVHHVRKGSAKDG--DTQEAARGASALVDGARWVRALTRM 191 (239)
T ss_pred EEEEEeccCcccccCc--ccccccCcHHHHhcccceEEEEeeC
Confidence 9999999987432110 0123467889999999999999863
No 65
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.54 E-value=1.1e-13 Score=116.16 Aligned_cols=164 Identities=24% Similarity=0.216 Sum_probs=104.5
Q ss_pred EEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQY 207 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 207 (352)
+++|+|+||+|||+|+.+++..... .+++++|++.+...... ....... ......+++.+..........
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~------~~~~v~~~~~e~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 70 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT------KGGKVVYVDIEEEIEEL--TERLIGE--SLKGALDNLIIVFATADDPAA 70 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh------cCCEEEEEECCcchHHH--HHHHhhh--hhccccccEEEEEcCCCCCcH
Confidence 4789999999999999999888765 57899999999874432 2211111 111122444444433222111
Q ss_pred -HHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccC
Q 047388 208 -NLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFIS 286 (352)
Q Consensus 208 -~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~ 286 (352)
.............+++++|||+++.+......+. ......+.+.+..|...+++.++++|+++|.....+.. +
T Consensus 71 ~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~-~-- 144 (165)
T cd01120 71 ARLLSKAERLRERGGDDLIILDELTRLVRALREIR---EGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKGD-P-- 144 (165)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHH---hcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccccC-c--
Confidence 1112223344456899999999998865422100 00012345777788888888999999999998743321 1
Q ss_pred CCCCCCcchhhhhccceEEEEEe
Q 047388 287 DPKKPAGGHVLAHAVTIRLMFRK 309 (352)
Q Consensus 287 ~~~~~~gg~~~~~~~~~~i~L~~ 309 (352)
..+.++..+.+.+|.++.|++
T Consensus 145 --~~~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 145 --RLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred --ccccCccceeeecceEEEEeC
Confidence 125677889999999999864
No 66
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=99.51 E-value=4.6e-13 Score=114.04 Aligned_cols=153 Identities=21% Similarity=0.291 Sum_probs=122.4
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH----cCC--------Cc----
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER----FGM--------DP---- 188 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~----~~~--------~~---- 188 (352)
.|.+++|.||.++|||..+.|+++.+.+|+.+||.+..|+|+|+...|+..|+.++.+. +.+ ..
T Consensus 37 aG~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~~~e~~~~~c~te~~~ 116 (293)
T KOG2859|consen 37 AGTLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYSVGEVIAAKCPTEEQL 116 (293)
T ss_pred cCcEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHHhhhhhhhhhcCCcHhHH
Confidence 68999999999999999999999999999999999999999999999999888877653 211 00
Q ss_pred ----ccccccEEEEecCCHHHHHHHHHHHHHHhhcC-CceEEEEcccccchhcccCCCcchH-HHHHHHHHHHHHHHHHH
Q 047388 189 ----GAVLDNIIYARAYTYEHQYNLLLGLAAKMSEE-PFRLLIVDSVIALFRVDFTGRGELA-DRQQKLGQMLSRLTKIS 262 (352)
Q Consensus 189 ----~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~-~~~lvvIDsl~~l~~~~~~~~g~~~-~r~~~l~~i~~~L~~la 262 (352)
.+.+.++.++++++..++...+..++..+.++ ++.++++||++++++.+-...++-- .....++.+.+.|++++
T Consensus 117 eEi~~~Cm~Rf~~v~C~~s~~ll~sL~~l~y~i~~~p~~cll~~DslsaFyW~Dr~~~le~~n~~~~~lr~~~q~LeKL~ 196 (293)
T KOG2859|consen 117 EEIAGECMSRFRFVNCFASDDLLTSLIDLRYAIINDPGICLLAMDSLSAFYWLDRPKILEKRNSMYRHLRLLQQRLEKLC 196 (293)
T ss_pred HHHHHHHHhhEEEEEeeccHHHHHHHHHHHHHHhcCCceeEEeecchhhheeecccchHhhhhhHHHHHHHHHHHHHHHH
Confidence 13467899999999999888888888777776 4899999999999987543211111 11235678889999999
Q ss_pred HHhCcEEEEEccccc
Q 047388 263 EEFNVAVYMTNQVIA 277 (352)
Q Consensus 263 ~~~~~~viv~~h~~~ 277 (352)
+.+...++.|.+...
T Consensus 197 ~d~~lv~~aT~~ti~ 211 (293)
T KOG2859|consen 197 KDAILVGMATVETIF 211 (293)
T ss_pred hhheeeeeeehhHHH
Confidence 998888888877543
No 67
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=99.47 E-value=2.5e-13 Score=122.20 Aligned_cols=178 Identities=19% Similarity=0.331 Sum_probs=119.6
Q ss_pred hcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCC----CCCeEEEEeCCCCCC--hhhHHHHHHHcCCCccccc
Q 047388 119 LGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRG----GNGKVAYIDTEGTFR--PDRIVPIAERFGMDPGAVL 192 (352)
Q Consensus 119 L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg----~~~~vl~i~~e~~~~--~~rl~~~~~~~~~~~~~~~ 192 (352)
+.+-+..|-...|+|++|+|||+++++++.......++-| .+++|+|++.|...+ -.|++.+..++++.|.++
T Consensus 82 Id~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadv- 160 (402)
T COG3598 82 IDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADV- 160 (402)
T ss_pred hhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhh-
Confidence 3456677888889999999999999999988776555433 478999999997633 246677788899988544
Q ss_pred ccEEEEec---CCHHHH--HHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCc
Q 047388 193 DNIIYARA---YTYEHQ--YNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNV 267 (352)
Q Consensus 193 ~~i~~~~~---~~~~~~--~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~ 267 (352)
.|+...+. ....+. ..++.+....+.+..+++||||++.+++..+ +... ..+..+++.++++|..++|
T Consensus 161 rn~dltd~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~-----s~s~--vqv~~fi~~~rkla~~l~c 233 (402)
T COG3598 161 RNMDLTDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGK-----SISD--VQVKEFIKKTRKLARNLEC 233 (402)
T ss_pred hheeccccccCCCccccccHHHHHHHHHHHHHhCCCeEEEcchhhhcCCc-----cchh--HHHHHHHHHHHHHHHhcCC
Confidence 33433211 110010 1334445555666789999999999886422 2222 3457999999999999999
Q ss_pred EEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEe
Q 047388 268 AVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309 (352)
Q Consensus 268 ~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~ 309 (352)
+||+++|..+...++ ...-.|+..|.....+++++..
T Consensus 234 aIiy~hHtskss~~~-----ksgrsGs~~dg~~l~~~l~l~~ 270 (402)
T COG3598 234 AIIYIHHTSKSSGKN-----KSGRSGSVSDGKFLTTPLMLAY 270 (402)
T ss_pred eEEEEeccccccCCC-----CCCCCCccCccHHHhhHHHHhc
Confidence 999999998743221 1112344455555555555543
No 68
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=99.36 E-value=2.5e-12 Score=116.78 Aligned_cols=202 Identities=13% Similarity=0.174 Sum_probs=133.5
Q ss_pred CChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHH-HHHc-CCCc
Q 047388 111 GSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPI-AERF-GMDP 188 (352)
Q Consensus 111 G~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~-~~~~-~~~~ 188 (352)
-++.|+++| +|.++|++++++||+|+|||||+...+...+. ++-+.+|-+.|.+ ..|+..+ +.++ |...
T Consensus 259 RFpvLNk~L-kGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~------QGVnTLwgSFEi~--n~rla~~mL~Qyagyrl 329 (514)
T KOG2373|consen 259 RFPVLNKYL-KGHRPGELTVLTGPTGSGKTTFLSEYSLDLFT------QGVNTLWGSFEIP--NKRLAHWMLVQYAGYRL 329 (514)
T ss_pred hhhHHHHHh-ccCCCCceEEEecCCCCCceeEehHhhHHHHh------hhhhheeeeeecc--hHHHHHHHHHHHccCch
Confidence 457899999 89999999999999999999999888887776 7888999999975 4455443 3333 3221
Q ss_pred cc-------ccccE----EEEecCCHHH-HHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHH
Q 047388 189 GA-------VLDNI----IYARAYTYEH-QYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLS 256 (352)
Q Consensus 189 ~~-------~~~~i----~~~~~~~~~~-~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~ 256 (352)
++ ..+++ .+...+...+ +...++.+.-.+.-+++.-||||+++.++....-. .+|-.....++.
T Consensus 330 ~drl~~y~HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~----~Drf~~QD~iig 405 (514)
T KOG2373|consen 330 LDRLNSYKHWADRFERLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMA----LDRFHLQDRIIG 405 (514)
T ss_pred HhhhhhhhHHHHHHhccchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchhc----cchhhhHHHHHH
Confidence 10 00110 1111122222 22334444444444578999999999987643211 234334468888
Q ss_pred HHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec----CCeEEEEEEeCCCCCc
Q 047388 257 RLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK----GEQRVCKVFDAPNLPE 327 (352)
Q Consensus 257 ~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~----~~~R~~~i~Ks~~~~~ 327 (352)
.++++|.++||.|-++-|..+..+.... +....-|+-...+-+|+++.+.+.+ ...+++.|.|+|....
T Consensus 406 ~fR~fAT~nn~HvTlVvHPRKed~d~El--~t~s~fGsAkatQEADNVliiQdkrl~~~rgkkyLqi~KNRy~Gd 478 (514)
T KOG2373|consen 406 YFRQFATQNNIHVTLVVHPRKEDGDTEL--DTQSFFGSAKATQEADNVLIIQDKRLDRDRGKKYLQILKNRYYGD 478 (514)
T ss_pred HHHHHhhccceeEEEEecccccCCCcee--eehhhccccccccccccEEEEeecccccccchhhhhhhhhcccCc
Confidence 9999999999999999999885322211 1112345556678899999997532 1467899999998654
No 69
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.25 E-value=1e-10 Score=100.45 Aligned_cols=135 Identities=19% Similarity=0.321 Sum_probs=87.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCc--------ccccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDP--------GAVLD 193 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~--------~~~~~ 193 (352)
-+.+|+++.|+||||||||||+. |.|.+.+ ...+-++|+.+.......+.++.++.|+-+ ..+++
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLR--clN~LE~-----~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvle 96 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLR--CLNGLEE-----PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLE 96 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHH--HHHCCcC-----CCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHH
Confidence 57899999999999999999999 6677765 355678888864433324555555554433 24566
Q ss_pred cEEEEec----CCHHHH----HHHHHH-----------------------HHHHhhcCCceEEEEcccccchhcccCCCc
Q 047388 194 NIIYARA----YTYEHQ----YNLLLG-----------------------LAAKMSEEPFRLLIVDSVIALFRVDFTGRG 242 (352)
Q Consensus 194 ~i~~~~~----~~~~~~----~~~l~~-----------------------l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g 242 (352)
|+..... .+..+. .+++.+ |.+.+ ..+|+++..|+.++.+.+++
T Consensus 97 Nv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARAL-aM~P~vmLFDEPTSALDPEl---- 171 (240)
T COG1126 97 NVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL-AMDPKVMLFDEPTSALDPEL---- 171 (240)
T ss_pred HHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHH-cCCCCEEeecCCcccCCHHH----
Confidence 6554321 111111 111111 01111 13799999999998876533
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 243 ELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 243 ~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
..+++..++.||++ |.|.|+++|-..
T Consensus 172 --------v~EVL~vm~~LA~e-GmTMivVTHEM~ 197 (240)
T COG1126 172 --------VGEVLDVMKDLAEE-GMTMIIVTHEMG 197 (240)
T ss_pred --------HHHHHHHHHHHHHc-CCeEEEEechhH
Confidence 35899999999986 899999998553
No 70
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.12 E-value=7.6e-10 Score=97.17 Aligned_cols=151 Identities=18% Similarity=0.211 Sum_probs=87.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC--CCCh-hhHHHHHHHcCCCc--------cc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG--TFRP-DRIVPIAERFGMDP--------GA 190 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~--~~~~-~rl~~~~~~~~~~~--------~~ 190 (352)
-+++|+++.|.||||||||||+.-+. ....| ..+.++|+..+ .++. .+...+.+.+|+-+ -+
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig-~ld~p------t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~lt 99 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLG-GLDKP------TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLT 99 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHh-cccCC------CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCC
Confidence 58999999999999999999998443 33332 23344555422 1222 22333344444332 24
Q ss_pred ccccEEE----EecCCH--HH-HHHHHHH--HH------------------HHhh---cCCceEEEEcccccchhcccCC
Q 047388 191 VLDNIIY----ARAYTY--EH-QYNLLLG--LA------------------AKMS---EEPFRLLIVDSVIALFRVDFTG 240 (352)
Q Consensus 191 ~~~~i~~----~~~~~~--~~-~~~~l~~--l~------------------~~l~---~~~~~lvvIDsl~~l~~~~~~~ 240 (352)
+.+|+.+ ...... .. ...++.. +. -.+. -.+|++|+-|+.+.-+..
T Consensus 100 v~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~---- 175 (226)
T COG1136 100 VLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDS---- 175 (226)
T ss_pred HHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCCh----
Confidence 4556542 111110 00 1111111 00 0001 137899999988765421
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEee
Q 047388 241 RGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKG 310 (352)
Q Consensus 241 ~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~ 310 (352)
.. -.+++..|+.+++++|.|||+++|-.. ++..+|-+|.+..+
T Consensus 176 ------~t--~~~V~~ll~~~~~~~g~tii~VTHd~~-------------------lA~~~dr~i~l~dG 218 (226)
T COG1136 176 ------KT--AKEVLELLRELNKERGKTIIMVTHDPE-------------------LAKYADRVIELKDG 218 (226)
T ss_pred ------HH--HHHHHHHHHHHHHhcCCEEEEEcCCHH-------------------HHHhCCEEEEEeCC
Confidence 11 238899999999999999999999442 46677888888754
No 71
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.08 E-value=3.6e-10 Score=99.29 Aligned_cols=136 Identities=19% Similarity=0.254 Sum_probs=81.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCC--hh----hHHHHHHHcCCCcc-ccccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFR--PD----RIVPIAERFGMDPG-AVLDN 194 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~--~~----rl~~~~~~~~~~~~-~~~~~ 194 (352)
-++.|+++.+.|||||||||++. +.|.+.. ...+.++|+.+...+ .. ++....+..|+.|. .+.+|
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLk--MINrLie-----pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eN 95 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLK--MINRLIE-----PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAEN 95 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHH--HHhcccC-----CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHH
Confidence 58899999999999999999999 4455554 245567888876433 22 23334455666553 55667
Q ss_pred EEEEec---CCHHHHHHHHHHHH-----------------------------HHhhcCCceEEEEcccccchhcccCCCc
Q 047388 195 IIYARA---YTYEHQYNLLLGLA-----------------------------AKMSEEPFRLLIVDSVIALFRVDFTGRG 242 (352)
Q Consensus 195 i~~~~~---~~~~~~~~~l~~l~-----------------------------~~l~~~~~~lvvIDsl~~l~~~~~~~~g 242 (352)
+.++.. ++.....+...++. +.+ ...|.++..|+.-..+.+
T Consensus 96 Ia~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL-AadP~ilLMDEPFgALDp------ 168 (309)
T COG1125 96 IATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL-AADPPILLMDEPFGALDP------ 168 (309)
T ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH-hcCCCeEeecCCccccCh------
Confidence 655432 22222111111111 011 125778888864433221
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 243 ELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 243 ~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
. .|. ++-..++++-++.+.|||+++|-..
T Consensus 169 -I-~R~----~lQ~e~~~lq~~l~kTivfVTHDid 197 (309)
T COG1125 169 -I-TRK----QLQEEIKELQKELGKTIVFVTHDID 197 (309)
T ss_pred -h-hHH----HHHHHHHHHHHHhCCEEEEEecCHH
Confidence 1 232 4556678888999999999999543
No 72
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.08 E-value=3.8e-10 Score=98.47 Aligned_cols=136 Identities=18% Similarity=0.272 Sum_probs=84.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC--CChhhHHHHHHHcCCCcc--------cc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT--FRPDRIVPIAERFGMDPG--------AV 191 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~--~~~~rl~~~~~~~~~~~~--------~~ 191 (352)
-+++|+++.|.|+||+|||||+..++.- +++ ..+-+++++++- .+..+...+.+++|+-++ .+
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gl--l~P-----~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV 102 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGL--LRP-----DKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTV 102 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhcc--CCC-----CCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccch
Confidence 5899999999999999999999977543 332 334556666542 334556667777775432 56
Q ss_pred cccEEEEec----CCHHHHHHHH-HHH---------------------------HHHhhcCCceEEEEcccccchhcccC
Q 047388 192 LDNIIYARA----YTYEHQYNLL-LGL---------------------------AAKMSEEPFRLLIVDSVIALFRVDFT 239 (352)
Q Consensus 192 ~~~i~~~~~----~~~~~~~~~l-~~l---------------------------~~~l~~~~~~lvvIDsl~~l~~~~~~ 239 (352)
.+|+.+.-. .+.....++. .++ .+.+ ..+|++++.|+.++-..+
T Consensus 103 ~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAi-aldPell~~DEPtsGLDP--- 178 (263)
T COG1127 103 FENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAI-ALDPELLFLDEPTSGLDP--- 178 (263)
T ss_pred hHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHH-hcCCCEEEecCCCCCCCc---
Confidence 677665311 1111111110 001 0111 137889999988766433
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 240 GRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 240 ~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.+ ...+...++++.+..++|+++++|-..
T Consensus 179 ----I~-----a~~~~~LI~~L~~~lg~T~i~VTHDl~ 207 (263)
T COG1127 179 ----IS-----AGVIDELIRELNDALGLTVIMVTHDLD 207 (263)
T ss_pred ----ch-----HHHHHHHHHHHHHhhCCEEEEEECChH
Confidence 22 236677788888899999999999543
No 73
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.05 E-value=7e-10 Score=100.14 Aligned_cols=144 Identities=17% Similarity=0.283 Sum_probs=91.3
Q ss_pred ChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC--CCChhhHHHHHHHcCCCcc
Q 047388 112 SQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG--TFRPDRIVPIAERFGMDPG 189 (352)
Q Consensus 112 ~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~--~~~~~rl~~~~~~~~~~~~ 189 (352)
+..||.+- =-+++|+++.|.|.||+|||||+. +.|.+..++ .+ -+++++.+ .++...+++..++.|+-++
T Consensus 19 ~~al~~vs-L~I~~GeI~GIIG~SGAGKSTLiR--~iN~Le~Pt----sG-~v~v~G~di~~l~~~~Lr~~R~~IGMIFQ 90 (339)
T COG1135 19 VTALDDVS-LEIPKGEIFGIIGYSGAGKSTLLR--LINLLERPT----SG-SVFVDGQDLTALSEAELRQLRQKIGMIFQ 90 (339)
T ss_pred eeeeccce-EEEcCCcEEEEEcCCCCcHHHHHH--HHhccCCCC----Cc-eEEEcCEecccCChHHHHHHHhhccEEec
Confidence 45566542 368999999999999999999999 667666532 33 45555533 2445566776677665442
Q ss_pred --------cccccEEEEec---CCHHHHH----HHHHH-----------------------HHHHhhcCCceEEEEcccc
Q 047388 190 --------AVLDNIIYARA---YTYEHQY----NLLLG-----------------------LAAKMSEEPFRLLIVDSVI 231 (352)
Q Consensus 190 --------~~~~~i~~~~~---~~~~~~~----~~l~~-----------------------l~~~l~~~~~~lvvIDsl~ 231 (352)
.+.+|+.+.-. .+-.+.. ++++. +.+.+ ..+|++++-|+.+
T Consensus 91 hFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARAL-a~~P~iLL~DEaT 169 (339)
T COG1135 91 HFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARAL-ANNPKILLCDEAT 169 (339)
T ss_pred cccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHH-hcCCCEEEecCcc
Confidence 34555544211 1111111 11110 11111 1379999999998
Q ss_pred cchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 232 ALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 232 ~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
+.+.+.. ...++..|+++.+++|+|||++||-.
T Consensus 170 SALDP~T------------T~sIL~LL~~In~~lglTIvlITHEm 202 (339)
T COG1135 170 SALDPET------------TQSILELLKDINRELGLTIVLITHEM 202 (339)
T ss_pred ccCChHH------------HHHHHHHHHHHHHHcCCEEEEEechH
Confidence 8865421 24899999999999999999999944
No 74
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.04 E-value=4e-09 Score=92.36 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=48.3
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhh
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAH 299 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~ 299 (352)
.+|+++|.|+.++.+.. . ..+++++.|..+.+++|.+.|+++|-.. .+.|
T Consensus 158 ~~PklLIlDEptSaLD~--------s----iQa~IlnlL~~l~~~~~lt~l~IsHdl~------------------~v~~ 207 (252)
T COG1124 158 PEPKLLILDEPTSALDV--------S----VQAQILNLLLELKKERGLTYLFISHDLA------------------LVEH 207 (252)
T ss_pred cCCCEEEecCchhhhcH--------H----HHHHHHHHHHHHHHhcCceEEEEeCcHH------------------HHHH
Confidence 37999999998887532 1 1258999999999999999999999543 3688
Q ss_pred ccceEEEEEee
Q 047388 300 AVTIRLMFRKG 310 (352)
Q Consensus 300 ~~~~~i~L~~~ 310 (352)
+||-++.+..+
T Consensus 208 ~cdRi~Vm~~G 218 (252)
T COG1124 208 MCDRIAVMDNG 218 (252)
T ss_pred HhhheeeeeCC
Confidence 88888888764
No 75
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.02 E-value=3.6e-09 Score=94.80 Aligned_cols=133 Identities=21% Similarity=0.206 Sum_probs=83.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCccc--ccccEEEE-
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGA--VLDNIIYA- 198 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~--~~~~i~~~- 198 (352)
-+++|+++.|.||+|||||||+..++.. ++ ...+.++++...-. ...-+++++.+++-|+. .-..+.+.
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~--l~-----p~~G~V~l~g~~i~-~~~~kelAk~ia~vpQ~~~~~~~~tV~d 95 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGL--LK-----PKSGEVLLDGKDIA-SLSPKELAKKLAYVPQSPSAPFGLTVYE 95 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhcc--CC-----CCCCEEEECCCchh-hcCHHHHhhhEEEeccCCCCCCCcEEee
Confidence 5889999999999999999999976543 22 24556778776532 22346677777665542 11122221
Q ss_pred -----ec--------CCHHH---HHHHHHHH-----------------------HHHhhcCCceEEEEcccccchhcccC
Q 047388 199 -----RA--------YTYEH---QYNLLLGL-----------------------AAKMSEEPFRLLIVDSVIALFRVDFT 239 (352)
Q Consensus 199 -----~~--------~~~~~---~~~~l~~l-----------------------~~~l~~~~~~lvvIDsl~~l~~~~~~ 239 (352)
+. .+.++ ..+.++.+ .+.+. -+++++++|+.++.+.
T Consensus 96 ~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALa-Q~~~iLLLDEPTs~LD---- 170 (258)
T COG1120 96 LVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALA-QETPILLLDEPTSHLD---- 170 (258)
T ss_pred hHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHh-cCCCEEEeCCCccccC----
Confidence 11 11111 11111111 01111 2689999999998753
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccc
Q 047388 240 GRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQV 275 (352)
Q Consensus 240 ~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~ 275 (352)
+. ++ .++++.+++++++.|.|||++.|-
T Consensus 171 ----i~--~Q--~evl~ll~~l~~~~~~tvv~vlHD 198 (258)
T COG1120 171 ----IA--HQ--IEVLELLRDLNREKGLTVVMVLHD 198 (258)
T ss_pred ----HH--HH--HHHHHHHHHHHHhcCCEEEEEecC
Confidence 22 22 489999999999999999999884
No 76
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.99 E-value=6.7e-10 Score=97.86 Aligned_cols=136 Identities=18% Similarity=0.242 Sum_probs=72.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCC-ChhhHHHHHHHcCCCc-ccccccEEEEe
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTF-RPDRIVPIAERFGMDP-GAVLDNIIYAR 199 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~-~~~rl~~~~~~~~~~~-~~~~~~i~~~~ 199 (352)
-+.+|+++.|.||||||||||+.-+| .+..+ ..+.+.+++.... +...+..++|+..+-| .++++|+.+.-
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiA--GL~~p-----~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l 97 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIA--GLEKP-----TSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGL 97 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHh--CCCCC-----CCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehh
Confidence 57899999999999999999999554 33332 2223344433211 1112223333333222 34445554431
Q ss_pred cC---CHHH----HHHHHH-----------------------HHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHH
Q 047388 200 AY---TYEH----QYNLLL-----------------------GLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQ 249 (352)
Q Consensus 200 ~~---~~~~----~~~~l~-----------------------~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~ 249 (352)
.. ...+ ..+.++ .+.+.+ -.+|+++++|+.-..+. .+. |
T Consensus 98 ~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL-~~~P~lLLlDEPFgALD-------alT-R-- 166 (248)
T COG1116 98 ELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARAL-ATRPKLLLLDEPFGALD-------ALT-R-- 166 (248)
T ss_pred hccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHH-hcCCCEEEEcCCcchhh-------HHH-H--
Confidence 11 1111 111111 011111 13789999997544321 111 2
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 250 KLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 250 ~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
..+-+.|.++.++.+.||++++|-..
T Consensus 167 --~~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 167 --EELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred --HHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 25566788889999999999999765
No 77
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.97 E-value=6.3e-09 Score=96.32 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=36.6
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
++|+++++|+.++-+.+ ..| .++.+.|+.++++.+.+|++++|...
T Consensus 153 ~~P~lliLDEPt~GLDp--------~~~----~~~~~~l~~l~~~g~~tvlissH~l~ 198 (293)
T COG1131 153 HDPELLILDEPTSGLDP--------ESR----REIWELLRELAKEGGVTILLSTHILE 198 (293)
T ss_pred cCCCEEEECCCCcCCCH--------HHH----HHHHHHHHHHHhCCCcEEEEeCCcHH
Confidence 47899999998876532 222 37888899999988899999999876
No 78
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.93 E-value=1.7e-08 Score=83.52 Aligned_cols=148 Identities=18% Similarity=0.218 Sum_probs=90.8
Q ss_pred cCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC--CCChhhHH----HHHHH
Q 047388 110 TGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG--TFRPDRIV----PIAER 183 (352)
Q Consensus 110 TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~--~~~~~rl~----~~~~~ 183 (352)
++-+-||.+- =-+.+|+.+.|+||||||||||+.++|.-. . ...+.+||.+|. ...++..+ ..++.
T Consensus 14 ~~a~il~~is-l~v~~Ge~iaitGPSG~GKStllk~va~Li-s------p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~ 85 (223)
T COG4619 14 GDAKILNNIS-LSVRAGEFIAITGPSGCGKSTLLKIVASLI-S------PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQT 85 (223)
T ss_pred CCCeeeccee-eeecCCceEEEeCCCCccHHHHHHHHHhcc-C------CCCceEEEcCccccccChHHHHHHHHHHHcC
Confidence 3444455432 367899999999999999999999776432 2 345678887774 23344333 33444
Q ss_pred cCCCcccccccEEEE-----ecCCHHHHHHHHHHH---------------------HHHhh--cCCceEEEEcccccchh
Q 047388 184 FGMDPGAVLDNIIYA-----RAYTYEHQYNLLLGL---------------------AAKMS--EEPFRLLIVDSVIALFR 235 (352)
Q Consensus 184 ~~~~~~~~~~~i~~~-----~~~~~~~~~~~l~~l---------------------~~~l~--~~~~~lvvIDsl~~l~~ 235 (352)
-.+..+.+.+|+.+. +.++.....+++.+. ...++ +..|+++.+|++++.+.
T Consensus 86 paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD 165 (223)
T COG4619 86 PALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALD 165 (223)
T ss_pred ccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcC
Confidence 455566777886653 223333333322211 01111 24799999999988754
Q ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 236 VDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 236 ~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
. .+.| .+-..+.++.++.+++|+-++|-..
T Consensus 166 ~-------~nkr-----~ie~mi~~~v~~q~vAv~WiTHd~d 195 (223)
T COG4619 166 E-------SNKR-----NIEEMIHRYVREQNVAVLWITHDKD 195 (223)
T ss_pred h-------hhHH-----HHHHHHHHHhhhhceEEEEEecChH
Confidence 2 1222 3444566666788999999999654
No 79
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.92 E-value=1.3e-09 Score=101.78 Aligned_cols=144 Identities=16% Similarity=0.207 Sum_probs=86.4
Q ss_pred ChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC----CChhhHHHHHHHcCCC
Q 047388 112 SQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT----FRPDRIVPIAERFGMD 187 (352)
Q Consensus 112 ~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~----~~~~rl~~~~~~~~~~ 187 (352)
...+|.+ .--+++|+++.|.|||||||||++..||.--.. .++-++++.+.- .....+..+++.|.+.
T Consensus 18 ~~av~~i-sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p-------~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALF 89 (352)
T COG3842 18 FTAVDDI-SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP-------SSGEILLDGEDITDVPPEKRPIGMVFQSYALF 89 (352)
T ss_pred eeEEecc-eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC-------CCceEEECCEECCCCChhhcccceeecCcccC
Confidence 3445542 356899999999999999999999977654332 344566766542 1223455667777766
Q ss_pred cc-cccccEEEEec----CCHHHHHHHHHHHH-----------------------HHhh---cCCceEEEEcccccchhc
Q 047388 188 PG-AVLDNIIYARA----YTYEHQYNLLLGLA-----------------------AKMS---EEPFRLLIVDSVIALFRV 236 (352)
Q Consensus 188 ~~-~~~~~i~~~~~----~~~~~~~~~l~~l~-----------------------~~l~---~~~~~lvvIDsl~~l~~~ 236 (352)
|. ++.+|+.|.-. ....+..+...++. ..+. ..+|+++.+|+..+.+.
T Consensus 90 PHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD- 168 (352)
T COG3842 90 PHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALD- 168 (352)
T ss_pred CCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchh-
Confidence 53 66677655321 11111111111110 0111 13688888886544321
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccc
Q 047388 237 DFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQV 275 (352)
Q Consensus 237 ~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~ 275 (352)
..-| .++-..|+++.++.|+|+|+++|-
T Consensus 169 -------~kLR----~~mr~Elk~lq~~~giT~i~VTHD 196 (352)
T COG3842 169 -------AKLR----EQMRKELKELQRELGITFVYVTHD 196 (352)
T ss_pred -------HHHH----HHHHHHHHHHHHhcCCeEEEEECC
Confidence 1223 266678899999999999999993
No 80
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.92 E-value=9.6e-09 Score=91.76 Aligned_cols=138 Identities=18% Similarity=0.263 Sum_probs=87.1
Q ss_pred hhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC------CChhhHHHHHHHcCC
Q 047388 113 QALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT------FRPDRIVPIAERFGM 186 (352)
Q Consensus 113 ~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~------~~~~rl~~~~~~~~~ 186 (352)
..+|.+- =-+.+|++..|+|+|||||||++..++.- ..| ..+.+||+...- -..+++.++++..|+
T Consensus 27 ~avd~Vs-f~i~~ge~~glVGESG~GKSTlgr~i~~L-~~p------t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl 98 (268)
T COG4608 27 KAVDGVS-FSIKEGETLGLVGESGCGKSTLGRLILGL-EEP------TSGEILFEGKDITKLSKEERRERVLELLEKVGL 98 (268)
T ss_pred EEeccee-EEEcCCCEEEEEecCCCCHHHHHHHHHcC-cCC------CCceEEEcCcchhhcchhHHHHHHHHHHHHhCC
Confidence 3445432 25889999999999999999999966532 222 334556665431 113457777788886
Q ss_pred CcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhC
Q 047388 187 DPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFN 266 (352)
Q Consensus 187 ~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~ 266 (352)
..+. +.+ +...++. .+.+.+.-.+ .+ ..+|+++|.|.+.+.+.. +-+ +++++.|+.+.+++|
T Consensus 99 ~~~~-~~r--yPhelSG-GQrQRi~IAR-AL-al~P~liV~DEpvSaLDv--------Siq----aqIlnLL~dlq~~~~ 160 (268)
T COG4608 99 PEEF-LYR--YPHELSG-GQRQRIGIAR-AL-ALNPKLIVADEPVSALDV--------SVQ----AQILNLLKDLQEELG 160 (268)
T ss_pred CHHH-hhc--CCcccCc-hhhhhHHHHH-HH-hhCCcEEEecCchhhcch--------hHH----HHHHHHHHHHHHHhC
Confidence 5421 111 1111222 2333333222 22 247999999998887532 222 489999999999999
Q ss_pred cEEEEEcccc
Q 047388 267 VAVYMTNQVI 276 (352)
Q Consensus 267 ~~viv~~h~~ 276 (352)
++.++++|-.
T Consensus 161 lt~lFIsHDL 170 (268)
T COG4608 161 LTYLFISHDL 170 (268)
T ss_pred CeEEEEEEEH
Confidence 9999999954
No 81
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.90 E-value=3.1e-09 Score=94.80 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=42.3
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+...-... ..+ ..+.+.|+++.++ |++|++++|--.. ....
T Consensus 157 ~p~lllLDEP~~gvD~--------~~~----~~i~~lL~~l~~e-g~tIl~vtHDL~~------------------v~~~ 205 (254)
T COG1121 157 NPDLLLLDEPFTGVDV--------AGQ----KEIYDLLKELRQE-GKTVLMVTHDLGL------------------VMAY 205 (254)
T ss_pred CCCEEEecCCcccCCH--------HHH----HHHHHHHHHHHHC-CCEEEEEeCCcHH------------------hHhh
Confidence 7999999987665321 111 3788889999888 9999999994431 3445
Q ss_pred cceEEEEEee
Q 047388 301 VTIRLMFRKG 310 (352)
Q Consensus 301 ~~~~i~L~~~ 310 (352)
+|.++.|.+.
T Consensus 206 ~D~vi~Ln~~ 215 (254)
T COG1121 206 FDRVICLNRH 215 (254)
T ss_pred CCEEEEEcCe
Confidence 6777777763
No 82
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.88 E-value=6.1e-09 Score=89.39 Aligned_cols=141 Identities=15% Similarity=0.221 Sum_probs=77.5
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChh-hHHHHHHHcCC-------Cccccc
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPD-RIVPIAERFGM-------DPGAVL 192 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~-rl~~~~~~~~~-------~~~~~~ 192 (352)
..|+++.++.|.||||||||||+..+ |.......+-.-.+-++++.++-+++. .+..+.++.|+ .|.++.
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~l--NRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIy 105 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCL--NRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIY 105 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHH--HhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHH
Confidence 57999999999999999999999954 443322212122234455555544431 12333334443 345677
Q ss_pred ccEEEEec-CCH--HHHHHHHH----------HHHHHh--------------------hcCCceEEEEcccccchhcccC
Q 047388 193 DNIIYARA-YTY--EHQYNLLL----------GLAAKM--------------------SEEPFRLLIVDSVIALFRVDFT 239 (352)
Q Consensus 193 ~~i~~~~~-~~~--~~~~~~l~----------~l~~~l--------------------~~~~~~lvvIDsl~~l~~~~~~ 239 (352)
+|+.+... ... ..+.++++ ++...+ -..+|+++..|+.++.+.+-
T Consensus 106 dNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPI-- 183 (253)
T COG1117 106 DNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPI-- 183 (253)
T ss_pred HHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCch--
Confidence 77665421 110 11111111 111111 01379999999998876432
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 240 GRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 240 ~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+- ..+.+++..|+ .+.|||+++|-..
T Consensus 184 -----sT--~kIEeLi~eLk-----~~yTIviVTHnmq 209 (253)
T COG1117 184 -----ST--LKIEELITELK-----KKYTIVIVTHNMQ 209 (253)
T ss_pred -----hH--HHHHHHHHHHH-----hccEEEEEeCCHH
Confidence 21 23445555554 3569999988654
No 83
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.87 E-value=2.1e-08 Score=87.45 Aligned_cols=149 Identities=17% Similarity=0.282 Sum_probs=91.1
Q ss_pred cccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC--CChhhHHHHHHHcC
Q 047388 108 ITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT--FRPDRIVPIAERFG 185 (352)
Q Consensus 108 i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~--~~~~rl~~~~~~~~ 185 (352)
+|-|-..|+.+= =-|++|+++.|.|+||+|||||+..+.. +.++ ..+.+++..++. .....++++..+.|
T Consensus 13 yp~~~~aL~~Vn-l~I~~GE~VaiIG~SGaGKSTLLR~lng--l~d~-----t~G~i~~~g~~i~~~~~k~lr~~r~~iG 84 (258)
T COG3638 13 YPGGHQALKDVN-LEINQGEMVAIIGPSGAGKSTLLRSLNG--LVDP-----TSGEILFNGVQITKLKGKELRKLRRDIG 84 (258)
T ss_pred cCCCceeeeeEe-EEeCCCcEEEEECCCCCcHHHHHHHHhc--ccCC-----CcceEEecccchhccchHHHHHHHHhce
Confidence 334555555532 3689999999999999999999996654 4443 233566666432 23344666666666
Q ss_pred CCcc--------cccccEEEEec------------CCHHHHHHHHHHHH--------------------------HHhhc
Q 047388 186 MDPG--------AVLDNIIYARA------------YTYEHQYNLLLGLA--------------------------AKMSE 219 (352)
Q Consensus 186 ~~~~--------~~~~~i~~~~~------------~~~~~~~~~l~~l~--------------------------~~l~~ 219 (352)
+-.+ .+++|+...+. ++.++....+..+. +.+.
T Consensus 85 mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~- 163 (258)
T COG3638 85 MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALV- 163 (258)
T ss_pred eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHh-
Confidence 5332 45555544332 12222221221111 1111
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.+++++.-|+..+-+.+. . ...++..|++++++.|+|||+.-|...
T Consensus 164 Q~pkiILADEPvasLDp~-------~-----a~~Vm~~l~~in~~~g~Tvi~nLH~vd 209 (258)
T COG3638 164 QQPKIILADEPVASLDPE-------S-----AKKVMDILKDINQEDGITVIVNLHQVD 209 (258)
T ss_pred cCCCEEecCCcccccChh-------h-----HHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 268999999876654332 1 238899999999999999999988543
No 84
>PRK04296 thymidine kinase; Provisional
Probab=98.86 E-value=7.5e-08 Score=83.53 Aligned_cols=139 Identities=14% Similarity=0.145 Sum_probs=85.0
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeC--CCCCChhhHHHHHHHcCCCcccccccEEEEecCCH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDT--EGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTY 203 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~--e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 203 (352)
|.+++++|++|+||||+++.++..... .+.+|+++.. +.... ...++.++|+.... +.+ ...
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~------~g~~v~i~k~~~d~~~~---~~~i~~~lg~~~~~----~~~---~~~ 65 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE------RGMKVLVFKPAIDDRYG---EGKVVSRIGLSREA----IPV---SSD 65 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH------cCCeEEEEecccccccc---CCcEecCCCCcccc----eEe---CCh
Confidence 789999999999999999999887765 5778888854 22111 22345555543311 111 122
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCc
Q 047388 204 EHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGV 283 (352)
Q Consensus 204 ~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~ 283 (352)
.+. +..+.. ...++++||||+++.+- .. ++.. |.+.++..|++||++...... .+..
T Consensus 66 ~~~---~~~~~~--~~~~~dvviIDEaq~l~-----------~~-----~v~~-l~~~l~~~g~~vi~tgl~~~~-~~~~ 122 (190)
T PRK04296 66 TDI---FELIEE--EGEKIDCVLIDEAQFLD-----------KE-----QVVQ-LAEVLDDLGIPVICYGLDTDF-RGEP 122 (190)
T ss_pred HHH---HHHHHh--hCCCCCEEEEEccccCC-----------HH-----HHHH-HHHHHHHcCCeEEEEecCccc-ccCc
Confidence 222 222222 34578999999996541 11 2222 344446789999998776542 2222
Q ss_pred ccCCCCCCCcchhhhhccceEEEEEee
Q 047388 284 FISDPKKPAGGHVLAHAVTIRLMFRKG 310 (352)
Q Consensus 284 ~~~~~~~~~gg~~~~~~~~~~i~L~~~ 310 (352)
| .....+...+|.+..|+..
T Consensus 123 f-------~~~~~L~~~aD~V~~l~~v 142 (190)
T PRK04296 123 F-------EGSPYLLALADKVTELKAI 142 (190)
T ss_pred C-------chHHHHHHhcCeEEEeeEE
Confidence 2 1234677889999999864
No 85
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.84 E-value=9.2e-09 Score=91.72 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=89.6
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcc---------cc
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG---------AV 191 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~---------~~ 191 (352)
-.+++|+.+.|.|++|||||||+..+ +.+.++ ..+.+ +++.........+.++.++.|+-.+ .+
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTL~~~l--~GLl~p----~~G~v-~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV 97 (235)
T COG1122 25 LEIEKGERVLLIGPNGSGKSTLLKLL--NGLLKP----TSGEV-LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTV 97 (235)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHH--cCcCcC----CCCEE-EECCeeccchhhHHHhhcceEEEEECcccccccCcH
Confidence 47899999999999999999999955 444432 23344 6666543222334555555554221 12
Q ss_pred cccEEEEec---CCHHHHHHHHHHHHH--------------------------HhhcCCceEEEEcccccchhcccCCCc
Q 047388 192 LDNIIYARA---YTYEHQYNLLLGLAA--------------------------KMSEEPFRLLIVDSVIALFRVDFTGRG 242 (352)
Q Consensus 192 ~~~i~~~~~---~~~~~~~~~l~~l~~--------------------------~l~~~~~~lvvIDsl~~l~~~~~~~~g 242 (352)
.+.+.+... ...++....+..... -+-..+|+++|+|+.++...+
T Consensus 98 ~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~------ 171 (235)
T COG1122 98 EDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDP------ 171 (235)
T ss_pred HHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCH------
Confidence 222222111 111111111111110 001137999999999888542
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEee
Q 047388 243 ELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKG 310 (352)
Q Consensus 243 ~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~ 310 (352)
..+ .++++.|+++.++.+.|+|+++|-... +...+|.++.|+.+
T Consensus 172 --~~~----~~l~~~l~~L~~~~~~tii~~tHd~~~------------------~~~~ad~v~vl~~G 215 (235)
T COG1122 172 --KGR----RELLELLKKLKEEGGKTIIIVTHDLEL------------------VLEYADRVVVLDDG 215 (235)
T ss_pred --HHH----HHHHHHHHHHHhcCCCeEEEEeCcHHH------------------HHhhCCEEEEEECC
Confidence 111 378888999999889999999996642 34456777777653
No 86
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.80 E-value=1.8e-08 Score=86.04 Aligned_cols=126 Identities=18% Similarity=0.209 Sum_probs=69.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcc-------ccccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG-------AVLDN 194 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~-------~~~~~ 194 (352)
-+++|+++.|.|++|+|||||+..++... .| ..+. ++++.+.... .....+.+..++-++ .+.+|
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~-----~~G~-i~~~g~~~~~-~~~~~~~~~i~~~~q~~~~~~~tv~~~ 95 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGLL-RP-----TSGR-VRLDGADISQ-WDPNELGDHVGYLPQDDELFSGSIAEN 95 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHhcc-CC-----CCCe-EEECCEEccc-CCHHHHHhheEEECCCCccccCcHHHH
Confidence 46799999999999999999999776532 22 2333 4555442111 111122223333221 11122
Q ss_pred EEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcc
Q 047388 195 IIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQ 274 (352)
Q Consensus 195 i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h 274 (352)
+ .+..+ .+.+. +.+.+. .+++++++|+.++.+.. ..+ ..+.+.|+++++ .+.+||+++|
T Consensus 96 l-----LS~G~-~qrv~-la~al~-~~p~~lllDEPt~~LD~--------~~~----~~l~~~l~~~~~-~~~tii~~sh 154 (173)
T cd03246 96 I-----LSGGQ-RQRLG-LARALY-GNPRILVLDEPNSHLDV--------EGE----RALNQAIAALKA-AGATRIVIAH 154 (173)
T ss_pred C-----cCHHH-HHHHH-HHHHHh-cCCCEEEEECCccccCH--------HHH----HHHHHHHHHHHh-CCCEEEEEeC
Confidence 1 11111 11111 112221 37899999998876532 222 266677777765 4899999988
Q ss_pred cc
Q 047388 275 VI 276 (352)
Q Consensus 275 ~~ 276 (352)
-.
T Consensus 155 ~~ 156 (173)
T cd03246 155 RP 156 (173)
T ss_pred CH
Confidence 54
No 87
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.80 E-value=2.6e-08 Score=83.48 Aligned_cols=136 Identities=18% Similarity=0.216 Sum_probs=74.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCC---Ch-hhHHHHHHHcCCCc-ccccccEE
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTF---RP-DRIVPIAERFGMDP-GAVLDNII 196 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~---~~-~rl~~~~~~~~~~~-~~~~~~i~ 196 (352)
-++.|+++.|.||||+|||||+.-+|.. ..| ..+.++|..++.- +. .-+..+++..++.. -++.+|+-
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF-~~P------~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGF-ETP------ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhc-cCC------CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 5789999999999999999999866544 333 3455666655321 11 12334444433322 12333433
Q ss_pred EEecC----CHHHHH---H---------HHHH--------------HHHHhhcCCceEEEEcccccchhcccCCCcchHH
Q 047388 197 YARAY----TYEHQY---N---------LLLG--------------LAAKMSEEPFRLLIVDSVIALFRVDFTGRGELAD 246 (352)
Q Consensus 197 ~~~~~----~~~~~~---~---------~l~~--------------l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~ 246 (352)
..... +..+.. . .+++ +.+.+.+.+ .++.+|+.-+.+.+ .-
T Consensus 94 LGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~-PilLLDEPFsALdP--------~L 164 (231)
T COG3840 94 LGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQ-PILLLDEPFSALDP--------AL 164 (231)
T ss_pred ccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccC-CeEEecCchhhcCH--------HH
Confidence 32111 111100 0 0111 111222223 35667765443322 33
Q ss_pred HHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 247 RQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 247 r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
|+ +++..+..+|.|.+.|+++++|-..
T Consensus 165 R~----eMl~Lv~~l~~E~~~TllmVTH~~~ 191 (231)
T COG3840 165 RA----EMLALVSQLCDERKMTLLMVTHHPE 191 (231)
T ss_pred HH----HHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 43 7888899999999999999998664
No 88
>PF13479 AAA_24: AAA domain
Probab=98.80 E-value=1.2e-07 Score=83.67 Aligned_cols=162 Identities=20% Similarity=0.195 Sum_probs=94.1
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEH 205 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 205 (352)
+-.+.|+|+||+|||+|+..+ .+++||++|..... +... .+...+++.+..+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~--------------~k~l~id~E~g~~~--~~~~------------~~~~~i~i~s~~~ 54 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL--------------PKPLFIDTENGSDS--LKFL------------DDGDVIPITSWED 54 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC--------------CCeEEEEeCCCccc--hhhh------------cCCCeeCcCCHHH
Confidence 346899999999999999854 36899999987221 1111 1122233446666
Q ss_pred HHHHHHHHHHHhhcCCceEEEEcccccchhc---ccC----------CC----cchHHHHHHHHHHHHHHHHHHHHhCcE
Q 047388 206 QYNLLLGLAAKMSEEPFRLLIVDSVIALFRV---DFT----------GR----GELADRQQKLGQMLSRLTKISEEFNVA 268 (352)
Q Consensus 206 ~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~---~~~----------~~----g~~~~r~~~l~~i~~~L~~la~~~~~~ 268 (352)
+.+.+..+... ..+.+.|||||++.+... ... +. ...+.-+ ..+.+.+..+.+..+..
T Consensus 55 ~~~~~~~l~~~--~~~y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~---~~~~~~i~~l~~~~~~~ 129 (213)
T PF13479_consen 55 FLEALDELEED--EADYDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQ---QEFMRFIDKLLNALGKN 129 (213)
T ss_pred HHHHHHHHHhc--cCCCCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHH---HHHHHHHHHHHHHCCCc
Confidence 66666554433 358999999999987431 111 00 1122222 34444445555668999
Q ss_pred EEEEcccccCCC--CCccc--CCCCCCCcchhhhhccceEEEEEee---c-CCeEEEEEE
Q 047388 269 VYMTNQVIADPG--GGVFI--SDPKKPAGGHVLAHAVTIRLMFRKG---K-GEQRVCKVF 320 (352)
Q Consensus 269 viv~~h~~~~~~--~~~~~--~~~~~~~gg~~~~~~~~~~i~L~~~---~-~~~R~~~i~ 320 (352)
||+|.|.....+ +..+. .....+.....+...+|.+..+... . ...|++...
T Consensus 130 VI~tah~~~~~~~~~~~~~~~~~~l~~k~~~~l~~~~D~V~~l~~~~~~~~~~~R~~~~~ 189 (213)
T PF13479_consen 130 VIFTAHAKEEEDEDGGKYTRYKPKLGKKVRNELPGWFDVVGRLRVETVDDETGKRVIYFQ 189 (213)
T ss_pred EEEEEEEEEEEcCCCCceeEEeeccChhHHhhhhecccEEEEEEEEEecCCCCceEEEEC
Confidence 999999876544 11110 0001123345677888888777632 1 234666543
No 89
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.80 E-value=6e-08 Score=81.99 Aligned_cols=122 Identities=17% Similarity=0.255 Sum_probs=69.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
-+++|+++.|.|++|+|||||+..++.. .++ ..+. ++++.... .......... .++.+....
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~----~~G~-v~~~g~~~-~~~~~~~~~~----------~~i~~~~qL 83 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGL--YKP----DSGE-ILVDGKEV-SFASPRDARR----------AGIAMVYQL 83 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCC--CCC----CCeE-EEECCEEC-CcCCHHHHHh----------cCeEEEEec
Confidence 4789999999999999999999966543 222 2333 55555422 1100111110 122232223
Q ss_pred CHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 202 ~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+..+... +. +.+.+. .+++++++|+.+.-+.. ..+ ..+...|++++++ +.++|+++|-..
T Consensus 84 S~G~~qr-l~-laral~-~~p~illlDEP~~~LD~--------~~~----~~l~~~l~~~~~~-~~tiii~sh~~~ 143 (163)
T cd03216 84 SVGERQM-VE-IARALA-RNARLLILDEPTAALTP--------AEV----ERLFKVIRRLRAQ-GVAVIFISHRLD 143 (163)
T ss_pred CHHHHHH-HH-HHHHHh-cCCCEEEEECCCcCCCH--------HHH----HHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 3333222 22 222222 37899999998776431 222 2666777777644 889999988654
No 90
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.80 E-value=7.3e-08 Score=82.36 Aligned_cols=128 Identities=16% Similarity=0.155 Sum_probs=68.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCC-ccCCC-----CCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccE
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPT-NMRGG-----NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNI 195 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~-~~gg~-----~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i 195 (352)
=+++|+++.|.||||||||||+..++.. ... ...+. ..++.|+.. .+.++++++..... +.
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~~--~G~v~~~~~~~~~~~~~~~~~~q---------~~~l~~~~L~~~~~-~~- 83 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLYA--SGKARLISFLPKFSRNKLIFIDQ---------LQFLIDVGLGYLTL-GQ- 83 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhc--CCcEEECCcccccccccEEEEhH---------HHHHHHcCCCcccc-CC-
Confidence 4789999999999999999999865310 000 00000 012333211 23556666543111 11
Q ss_pred EEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccc
Q 047388 196 IYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQV 275 (352)
Q Consensus 196 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~ 275 (352)
.....+..+ ...+.-....+...+++++++|+.++-+.. ..+ ..+.+.|+++++ .+.+||+++|-
T Consensus 84 -~~~~LSgGq-~qrl~laral~~~~~p~llLlDEPt~~LD~--------~~~----~~l~~~l~~~~~-~g~tvIivSH~ 148 (176)
T cd03238 84 -KLSTLSGGE-LQRVKLASELFSEPPGTLFILDEPSTGLHQ--------QDI----NQLLEVIKGLID-LGNTVILIEHN 148 (176)
T ss_pred -CcCcCCHHH-HHHHHHHHHHhhCCCCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHh-CCCEEEEEeCC
Confidence 011222222 222222222332223899999998876532 222 256666777754 68999999996
Q ss_pred cc
Q 047388 276 IA 277 (352)
Q Consensus 276 ~~ 277 (352)
..
T Consensus 149 ~~ 150 (176)
T cd03238 149 LD 150 (176)
T ss_pred HH
Confidence 53
No 91
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.79 E-value=2.5e-08 Score=89.24 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=43.4
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-.. .+...
T Consensus 132 ~p~lllLDEPt~gLD~--------~~~----~~l~~~l~~~~~~~~~tii~~sH~~~------------------~~~~~ 181 (230)
T TIGR01184 132 RPKVLLLDEPFGALDA--------LTR----GNLQEELMQIWEEHRVTVLMVTHDVD------------------EALLL 181 (230)
T ss_pred CCCEEEEcCCCcCCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHHh
Confidence 7899999998876532 222 37777788888878999999999653 13556
Q ss_pred cceEEEEEee
Q 047388 301 VTIRLMFRKG 310 (352)
Q Consensus 301 ~~~~i~L~~~ 310 (352)
+|.++.+..+
T Consensus 182 ~d~v~~l~~G 191 (230)
T TIGR01184 182 SDRVVMLTNG 191 (230)
T ss_pred cCEEEEEeCC
Confidence 7777777653
No 92
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.77 E-value=5.5e-08 Score=83.45 Aligned_cols=132 Identities=21% Similarity=0.308 Sum_probs=72.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChh-hHHHHHHHcCCCcc--------ccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPD-RIVPIAERFGMDPG--------AVL 192 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~-rl~~~~~~~~~~~~--------~~~ 192 (352)
-+++|+++.|.|++|+|||||+..++.. .++ ..+ -++++........ ......+..++-++ .+.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~----~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 94 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTLLRCIAGL--EEP----DSG-SILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVL 94 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC--CCC----Cce-EEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHH
Confidence 4789999999999999999999977643 221 233 3455443211100 01112222222111 222
Q ss_pred ccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEE
Q 047388 193 DNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMT 272 (352)
Q Consensus 193 ~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~ 272 (352)
+++.+. .+..+ .+.+. +...+. .+++++++|+.++-+.. ..+ ..+...|++++++++.++|++
T Consensus 95 ~~l~~~--lS~G~-~qr~~-la~al~-~~p~llilDEP~~~LD~--------~~~----~~l~~~l~~~~~~~~~tiii~ 157 (178)
T cd03229 95 ENIALG--LSGGQ-QQRVA-LARALA-MDPDVLLLDEPTSALDP--------ITR----REVRALLKSLQAQLGITVVLV 157 (178)
T ss_pred Hheeec--CCHHH-HHHHH-HHHHHH-CCCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEE
Confidence 333221 22222 11111 122222 37899999998876432 222 267777888877768999999
Q ss_pred ccccc
Q 047388 273 NQVIA 277 (352)
Q Consensus 273 ~h~~~ 277 (352)
+|-..
T Consensus 158 sH~~~ 162 (178)
T cd03229 158 THDLD 162 (178)
T ss_pred eCCHH
Confidence 99654
No 93
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=7e-08 Score=82.39 Aligned_cols=127 Identities=20% Similarity=0.264 Sum_probs=70.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcc--------cccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG--------AVLD 193 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~--------~~~~ 193 (352)
-+++|+++.|.|++|+|||||+..++.. .++ ..+ .++++.+...... ..+.+..++-++ .+.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~--~~~----~~G-~i~~~g~~~~~~~--~~~~~~i~~~~q~~~~~~~~tv~~ 92 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGL--LKP----DSG-EIKVLGKDIKKEP--EEVKRRIGYLPEEPSLYENLTVRE 92 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC--CCC----CCe-EEEECCEEcccch--HhhhccEEEEecCCccccCCcHHH
Confidence 4789999999999999999999966543 222 233 3455543221110 112222332221 1111
Q ss_pred cEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEc
Q 047388 194 NIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTN 273 (352)
Q Consensus 194 ~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~ 273 (352)
|+. .+..+ .+.+. +.+.+. .+++++++|+.++.+.. ..+ ..+.+.|++++++ +.++|+++
T Consensus 93 ~~~----LS~G~-~qrv~-laral~-~~p~illlDEPt~~LD~--------~~~----~~l~~~l~~~~~~-g~tiii~t 152 (173)
T cd03230 93 NLK----LSGGM-KQRLA-LAQALL-HDPELLILDEPTSGLDP--------ESR----REFWELLRELKKE-GKTILLSS 152 (173)
T ss_pred Hhh----cCHHH-HHHHH-HHHHHH-cCCCEEEEeCCccCCCH--------HHH----HHHHHHHHHHHHC-CCEEEEEC
Confidence 111 11111 11111 122222 37899999998877532 222 3677778888776 88999998
Q ss_pred cccc
Q 047388 274 QVIA 277 (352)
Q Consensus 274 h~~~ 277 (352)
|-..
T Consensus 153 h~~~ 156 (173)
T cd03230 153 HILE 156 (173)
T ss_pred CCHH
Confidence 8543
No 94
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=1.8e-07 Score=83.79 Aligned_cols=59 Identities=14% Similarity=0.259 Sum_probs=42.2
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+.+.|+.++++.+.+||+++|-.. .+..+
T Consensus 158 ~p~lllLDEP~~~LD~--------~~~----~~l~~~l~~~~~~~~~tvii~sH~~~------------------~~~~~ 207 (233)
T cd03258 158 NPKVLLCDEATSALDP--------ETT----QSILALLRDINRELGLTIVLITHEME------------------VVKRI 207 (233)
T ss_pred CCCEEEecCCCCcCCH--------HHH----HHHHHHHHHHHHHcCCEEEEEeCCHH------------------HHHHh
Confidence 7899999998776431 222 26777788887777899999999653 13556
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|+.
T Consensus 208 ~d~i~~l~~ 216 (233)
T cd03258 208 CDRVAVMEK 216 (233)
T ss_pred CCEEEEEEC
Confidence 677777764
No 95
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.76 E-value=1.9e-07 Score=84.16 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=41.8
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-... +...
T Consensus 163 ~p~llllDEPt~~LD~--------~~~----~~l~~~l~~~~~~~~~tiii~tH~~~~------------------~~~~ 212 (243)
T TIGR02315 163 QPDLILADEPIASLDP--------KTS----KQVMDYLKRINKEDGITVIINLHQVDL------------------AKKY 212 (243)
T ss_pred CCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHHcCCEEEEEeCCHHH------------------HHHh
Confidence 7899999998876432 222 266777888877778999999996541 3456
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 213 ~d~v~~l~~ 221 (243)
T TIGR02315 213 ADRIVGLKA 221 (243)
T ss_pred cCeEEEEEC
Confidence 677777764
No 96
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=98.75 E-value=1.4e-07 Score=79.98 Aligned_cols=88 Identities=24% Similarity=0.311 Sum_probs=54.6
Q ss_pred EEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHc-CCCcccccccEEEEecCCHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERF-GMDPGAVLDNIIYARAYTYEHQ 206 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~ 206 (352)
++.|.|++|||||+|+.+++.. .+.+++|+++...++.+ ++++.++. ...+ ..+... +..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---------~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~----~~w~t~-----E~~ 61 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---------LGGPVTYIATAEAFDDE-MAERIARHRKRRP----AHWRTI-----ETP 61 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---------cCCCeEEEEccCcCCHH-HHHHHHHHHHhCC----CCceEe-----ecH
Confidence 5789999999999999999864 34689999999887754 33322221 1112 112221 111
Q ss_pred HHHHHHHHHHhhcC-CceEEEEcccccchhccc
Q 047388 207 YNLLLGLAAKMSEE-PFRLLIVDSVIALFRVDF 238 (352)
Q Consensus 207 ~~~l~~l~~~l~~~-~~~lvvIDsl~~l~~~~~ 238 (352)
.+ +.+.+... +.+.|+||+++.+....+
T Consensus 62 ~~----l~~~l~~~~~~~~VLIDclt~~~~n~l 90 (169)
T cd00544 62 RD----LVSALKELDPGDVVLIDCLTLWVTNLL 90 (169)
T ss_pred HH----HHHHHHhcCCCCEEEEEcHhHHHHHhC
Confidence 12 22222222 567999999999887654
No 97
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.75 E-value=1.8e-07 Score=84.13 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=42.6
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-.. .+...
T Consensus 162 ~p~llllDEPt~~LD~--------~~~----~~l~~~l~~~~~~~~~tii~~tH~~~------------------~~~~~ 211 (241)
T cd03256 162 QPKLILADEPVASLDP--------ASS----RQVMDLLKRINREEGITVIVSLHQVD------------------LAREY 211 (241)
T ss_pred CCCEEEEeCccccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHHh
Confidence 7899999998876532 222 36777788888777999999999653 13456
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 212 ~d~v~~l~~ 220 (241)
T cd03256 212 ADRIVGLKD 220 (241)
T ss_pred CCEEEEEEC
Confidence 787778764
No 98
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.75 E-value=1.5e-07 Score=89.03 Aligned_cols=136 Identities=15% Similarity=0.232 Sum_probs=76.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC--CChhhHHHHHHHcCCCcc--------cc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT--FRPDRIVPIAERFGMDPG--------AV 191 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~--~~~~rl~~~~~~~~~~~~--------~~ 191 (352)
-+++|+++.|.|+||+|||||+..++. ..++ ..+.++++.+.- .++..++...++.++-++ .+
T Consensus 27 ~i~~Gei~gIiG~sGaGKSTLlr~I~g--l~~p-----~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv 99 (343)
T TIGR02314 27 HVPAGQIYGVIGASGAGKSTLIRCVNL--LERP-----TSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTV 99 (343)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc--CCCC-----CceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcH
Confidence 478999999999999999999996643 3332 233455655432 122223333333333221 23
Q ss_pred cccEEEEe---cCCHHH----HHHHHHHH-----------------------HHHhhcCCceEEEEcccccchhcccCCC
Q 047388 192 LDNIIYAR---AYTYEH----QYNLLLGL-----------------------AAKMSEEPFRLLIVDSVIALFRVDFTGR 241 (352)
Q Consensus 192 ~~~i~~~~---~~~~~~----~~~~l~~l-----------------------~~~l~~~~~~lvvIDsl~~l~~~~~~~~ 241 (352)
.+|+.+.. ..+..+ ..++++.+ .+.+ -.+|+++++|+.++.+.+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL-~~~P~iLLlDEPts~LD~----- 173 (343)
T TIGR02314 100 FGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARAL-ASNPKVLLCDEATSALDP----- 173 (343)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH-HhCCCEEEEeCCcccCCH-----
Confidence 33332210 011111 11111110 0111 137899999998876532
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 242 GELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 242 g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
..+ ..+++.|++++++.++|||+++|-..
T Consensus 174 ---~t~----~~i~~lL~~l~~~~g~tiiliTH~~~ 202 (343)
T TIGR02314 174 ---ATT----QSILELLKEINRRLGLTILLITHEMD 202 (343)
T ss_pred ---HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 122 37888899998888999999999543
No 99
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.75 E-value=8.8e-08 Score=83.42 Aligned_cols=135 Identities=19% Similarity=0.235 Sum_probs=79.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH-cCCCc--------cccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER-FGMDP--------GAVL 192 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~-~~~~~--------~~~~ 192 (352)
-+++|+++.+.|++|+||||++.+++..... ..+. +.++.++- ....-.++++. +++-| .++.
T Consensus 25 ~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~------~~G~-I~~~G~di-t~~p~~~r~r~Gi~~VPegR~iF~~LTVe 96 (237)
T COG0410 25 EVERGEIVALLGRNGAGKTTLLKTIMGLVRP------RSGR-IIFDGEDI-TGLPPHERARLGIAYVPEGRRIFPRLTVE 96 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC------CCee-EEECCeec-CCCCHHHHHhCCeEeCcccccchhhCcHH
Confidence 4789999999999999999999977643322 3344 44555432 11112223321 22222 1455
Q ss_pred ccEEEEec--C-------CHHHHHHHHHHHHHHhh--------------------cCCceEEEEcccccchhcccCCCcc
Q 047388 193 DNIIYARA--Y-------TYEHQYNLLLGLAAKMS--------------------EEPFRLLIVDSVIALFRVDFTGRGE 243 (352)
Q Consensus 193 ~~i~~~~~--~-------~~~~~~~~l~~l~~~l~--------------------~~~~~lvvIDsl~~l~~~~~~~~g~ 243 (352)
+|+.+... . +.++..+++-.+.+... -.+|+++++|+.+.-..+
T Consensus 97 ENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP------- 169 (237)
T COG0410 97 ENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAP------- 169 (237)
T ss_pred HHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCH-------
Confidence 56543211 0 12223332222221110 137999999998876543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 244 LADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 244 ~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
....++.+.++++.++.++||+++-|-.
T Consensus 170 -----~iv~~I~~~i~~l~~~~g~tIlLVEQn~ 197 (237)
T COG0410 170 -----KIVEEIFEAIKELRKEGGMTILLVEQNA 197 (237)
T ss_pred -----HHHHHHHHHHHHHHHcCCcEEEEEeccH
Confidence 2345889999999988899999998744
No 100
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.74 E-value=2.3e-08 Score=93.05 Aligned_cols=133 Identities=17% Similarity=0.239 Sum_probs=77.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC--CCh--hhHHHHHHHcCCCcc-cccccEE
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT--FRP--DRIVPIAERFGMDPG-AVLDNII 196 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~--~~~--~rl~~~~~~~~~~~~-~~~~~i~ 196 (352)
-+..|+++.|.||||||||||+..+|. +.. ..++-++|+.+.- ++| ..+...++.+.+-|. ++.+|+.
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAG--Le~-----~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Nia 97 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAG--LEE-----PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIA 97 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC--CCC-----CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhh
Confidence 478899999999999999999996653 332 2455677776532 222 223344455554443 5666655
Q ss_pred EEecC---CHHHHHHHHHHHH---------------------------HHhhcCCceEEEEcccccchhcccCCCcchHH
Q 047388 197 YARAY---TYEHQYNLLLGLA---------------------------AKMSEEPFRLLIVDSVIALFRVDFTGRGELAD 246 (352)
Q Consensus 197 ~~~~~---~~~~~~~~l~~l~---------------------------~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~ 246 (352)
+.-.. ...+....+.++. +.+ -.+|+++.+|+..+.+.. .-
T Consensus 98 f~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAl-Vr~P~v~L~DEPlSnLDa--------~l 168 (338)
T COG3839 98 FGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARAL-VRKPKVFLLDEPLSNLDA--------KL 168 (338)
T ss_pred hhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHH-hcCCCEEEecCchhHhhH--------HH
Confidence 53111 1111111111110 111 136899999986554321 11
Q ss_pred HHHHHHHHHHHHHHHHHHhCcEEEEEcc
Q 047388 247 RQQKLGQMLSRLTKISEEFNVAVYMTNQ 274 (352)
Q Consensus 247 r~~~l~~i~~~L~~la~~~~~~viv~~h 274 (352)
| ..+-..|+++.+++++|+|.++|
T Consensus 169 R----~~mr~ei~~lh~~l~~T~IYVTH 192 (338)
T COG3839 169 R----VLMRSEIKKLHERLGTTTIYVTH 192 (338)
T ss_pred H----HHHHHHHHHHHHhcCCcEEEEcC
Confidence 2 25556788888999999999999
No 101
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=1.3e-07 Score=89.71 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=34.9
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.+|+++++|+.++.+.. ..+ ..+.+.|++++++.+++||+++|-..
T Consensus 157 ~~p~iLlLDEPts~LD~--------~~~----~~l~~~L~~l~~~~g~tiilvtH~~~ 202 (343)
T PRK11153 157 SNPKVLLCDEATSALDP--------ATT----RSILELLKDINRELGLTIVLITHEMD 202 (343)
T ss_pred cCCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 37999999998876532 222 37778888888888999999999654
No 102
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.74 E-value=2.1e-07 Score=82.26 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=24.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999999997664
No 103
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.73 E-value=9.7e-08 Score=89.08 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=33.1
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
++|+++++|+.++-+.+ ..| ..+.+.|+++++ .|.+||+++|...
T Consensus 155 ~~P~lllLDEPt~gLD~--------~~~----~~l~~~l~~l~~-~g~till~sH~l~ 199 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDP--------QAR----HLMWERLRSLLA-RGKTILLTTHFME 199 (306)
T ss_pred CCCCEEEEeCCCcCCCH--------HHH----HHHHHHHHHHHh-CCCEEEEECCCHH
Confidence 47999999998876532 222 266677777754 4999999999765
No 104
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.73 E-value=2.4e-07 Score=79.56 Aligned_cols=130 Identities=22% Similarity=0.331 Sum_probs=73.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC--CChhhHH-------HHHHHcCCCccccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT--FRPDRIV-------PIAERFGMDPGAVL 192 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~--~~~~rl~-------~~~~~~~~~~~~~~ 192 (352)
-+.+|+++.|.|++|+|||||+..++.. .++ ..+. ++++.... .....++ ++++.+++.. ..
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~--~~~----~~G~-v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~--~~ 91 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGL--LKP----SSGE-ILLDGKDLASLSPKELARKIAYVPQALELLGLAH--LA 91 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCC--CCC----CCcE-EEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHh--Hh
Confidence 4789999999999999999999966543 322 2334 45554321 1221111 1234444431 11
Q ss_pred ccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEE
Q 047388 193 DNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMT 272 (352)
Q Consensus 193 ~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~ 272 (352)
.. .....+..+. ..+. +.+.+. .+++++++|+.++-+.. ..+ ..+.+.|++++++++.++|++
T Consensus 92 ~~--~~~~LS~G~~-qrl~-laral~-~~p~llllDEP~~~LD~--------~~~----~~~~~~l~~~~~~~~~tiii~ 154 (180)
T cd03214 92 DR--PFNELSGGER-QRVL-LARALA-QEPPILLLDEPTSHLDI--------AHQ----IELLELLRRLARERGKTVVMV 154 (180)
T ss_pred cC--CcccCCHHHH-HHHH-HHHHHh-cCCCEEEEeCCccCCCH--------HHH----HHHHHHHHHHHHhcCCEEEEE
Confidence 11 0112222222 2222 222222 37899999998876432 222 266777777777668999999
Q ss_pred ccccc
Q 047388 273 NQVIA 277 (352)
Q Consensus 273 ~h~~~ 277 (352)
+|-..
T Consensus 155 sh~~~ 159 (180)
T cd03214 155 LHDLN 159 (180)
T ss_pred eCCHH
Confidence 88654
No 105
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.72 E-value=1.3e-07 Score=92.55 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=46.4
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+|+++|.|+..+.+.. . ....+++.|+++-+++|+|.++++|-.. .+.+.
T Consensus 447 ~P~lli~DEp~SaLDv--------s----vqa~VlnLl~~lq~e~g~t~lfISHDl~------------------vV~~i 496 (539)
T COG1123 447 EPKLLILDEPVSALDV--------S----VQAQVLNLLKDLQEELGLTYLFISHDLA------------------VVRYI 496 (539)
T ss_pred CCCEEEecCCccccCH--------H----HHHHHHHHHHHHHHHhCCEEEEEeCCHH------------------HHHhh
Confidence 7899999987776432 1 2248999999999999999999999654 25677
Q ss_pred cceEEEEEee
Q 047388 301 VTIRLMFRKG 310 (352)
Q Consensus 301 ~~~~i~L~~~ 310 (352)
||-+..++.+
T Consensus 497 ~drv~vm~~G 506 (539)
T COG1123 497 ADRVAVMYDG 506 (539)
T ss_pred CceEEEEECC
Confidence 8877777764
No 106
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=6.4e-08 Score=89.16 Aligned_cols=136 Identities=15% Similarity=0.220 Sum_probs=75.2
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCc---------ccc
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDP---------GAV 191 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~---------~~~ 191 (352)
--+++|+++.|.|++|+|||||+..++.. .++ . .+.++++...- .........+..++-+ ..+
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p----~-~G~i~~~g~~i-~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (279)
T PRK13650 28 FHVKQGEWLSIIGHNGSGKSTTVRLIDGL--LEA----E-SGQIIIDGDLL-TEENVWDIRHKIGMVFQNPDNQFVGATV 99 (279)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcC--CCC----C-CcEEEECCEEC-CcCcHHHHHhhceEEEcChHHhcccccH
Confidence 35789999999999999999999976543 222 2 23455555432 1111112222333221 133
Q ss_pred cccEEEEec---CCHHH----HHHHHHH-----------------------HHHHhhcCCceEEEEcccccchhcccCCC
Q 047388 192 LDNIIYARA---YTYEH----QYNLLLG-----------------------LAAKMSEEPFRLLIVDSVIALFRVDFTGR 241 (352)
Q Consensus 192 ~~~i~~~~~---~~~~~----~~~~l~~-----------------------l~~~l~~~~~~lvvIDsl~~l~~~~~~~~ 241 (352)
.+|+.+... .+..+ ..+.+.. +.+.+ -.+++++++|+.++.+..
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral-~~~p~lLlLDEPt~~LD~----- 173 (279)
T PRK13650 100 EDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAV-AMRPKIIILDEATSMLDP----- 173 (279)
T ss_pred HHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH-HcCCCEEEEECCcccCCH-----
Confidence 344433211 11111 1111110 00111 137899999998877532
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 242 GELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 242 g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
..+ ..+.+.|++++++.|.|||+++|-..
T Consensus 174 ---~~~----~~l~~~l~~l~~~~g~tilivtH~~~ 202 (279)
T PRK13650 174 ---EGR----LELIKTIKGIRDDYQMTVISITHDLD 202 (279)
T ss_pred ---HHH----HHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 222 37778888888878999999999653
No 107
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=6.3e-08 Score=85.33 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=34.3
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-..
T Consensus 146 ~p~llllDEP~~~LD~--------~~~----~~l~~~l~~~~~~~~~tii~~sH~~~ 190 (211)
T cd03298 146 DKPVLLLDEPFAALDP--------ALR----AEMLDLVLDLHAETKMTVLMVTHQPE 190 (211)
T ss_pred CCCEEEEcCCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 7899999998876532 222 26777788888777999999999654
No 108
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.71 E-value=5.9e-08 Score=81.92 Aligned_cols=149 Identities=15% Similarity=0.178 Sum_probs=85.0
Q ss_pred ccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC-CChhhHHHHHHHcC
Q 047388 107 KITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT-FRPDRIVPIAERFG 185 (352)
Q Consensus 107 ~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~-~~~~rl~~~~~~~~ 185 (352)
..+.|-+.|+.+- =-+++|+++-|+||||+|||||+.-+...... ..+++++.+.+-+ .....+-..-++.|
T Consensus 10 ~Y~~g~~aL~~vs-~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p------t~G~i~~~~~dl~~l~~~~iP~LRR~IG 82 (223)
T COG2884 10 AYPGGREALRDVS-FHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP------TRGKILVNGHDLSRLKGREIPFLRRQIG 82 (223)
T ss_pred hcCCCchhhhCce-EeecCceEEEEECCCCCCHHHHHHHHHhhhcC------CCceEEECCeecccccccccchhhheee
Confidence 3556655777653 36899999999999999999999966554333 3455555443321 12223333444455
Q ss_pred CCcc--------cccccEEEEe---cCCHHHHH----HHHHH-----------------------HHHHhhcCCceEEEE
Q 047388 186 MDPG--------AVLDNIIYAR---AYTYEHQY----NLLLG-----------------------LAAKMSEEPFRLLIV 227 (352)
Q Consensus 186 ~~~~--------~~~~~i~~~~---~~~~~~~~----~~l~~-----------------------l~~~l~~~~~~lvvI 227 (352)
+-++ .+.+|+.+.- .....+.. +.++. +.+.+ -++|.+++-
T Consensus 83 vVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAi-V~~P~vLlA 161 (223)
T COG2884 83 VVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAI-VNQPAVLLA 161 (223)
T ss_pred eEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHH-ccCCCeEee
Confidence 4332 3445544321 11111111 11110 11111 147899999
Q ss_pred cccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 228 DSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 228 Dsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
|+.+.-+.++. + .++++.|.++.+ .|.||++.+|-.
T Consensus 162 DEPTGNLDp~~------s------~~im~lfeeinr-~GtTVl~ATHd~ 197 (223)
T COG2884 162 DEPTGNLDPDL------S------WEIMRLFEEINR-LGTTVLMATHDL 197 (223)
T ss_pred cCCCCCCChHH------H------HHHHHHHHHHhh-cCcEEEEEeccH
Confidence 98876654332 1 277788888754 799999999954
No 109
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.71 E-value=3.2e-08 Score=89.40 Aligned_cols=135 Identities=15% Similarity=0.201 Sum_probs=75.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCc--------ccccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDP--------GAVLD 193 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~--------~~~~~ 193 (352)
-|+.|+++.+.|||||||||++..||. +..+ ..+-++++.+--|+...+....++.|+-. ..+.+
T Consensus 24 ~i~~Ge~vaLlGpSGaGKsTlLRiIAG--Le~p-----~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~ 96 (345)
T COG1118 24 DIKSGELVALLGPSGAGKSTLLRIIAG--LETP-----DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVAD 96 (345)
T ss_pred eecCCcEEEEECCCCCcHHHHHHHHhC--cCCC-----CCceEEECCEeccchhccchhhcceeEEEechhhcccchHHh
Confidence 578999999999999999999996653 3332 33445555553333333334444444433 24556
Q ss_pred cEEEEec-----CCHHH----HHHHHH--HHH-----------------HHhh---cCCceEEEEcccccchhcccCCCc
Q 047388 194 NIIYARA-----YTYEH----QYNLLL--GLA-----------------AKMS---EEPFRLLIVDSVIALFRVDFTGRG 242 (352)
Q Consensus 194 ~i~~~~~-----~~~~~----~~~~l~--~l~-----------------~~l~---~~~~~lvvIDsl~~l~~~~~~~~g 242 (352)
||.+.-. .+... ..+++. ++. -.+. ...|+++.+|+...-+..
T Consensus 97 NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa------ 170 (345)
T COG1118 97 NIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA------ 170 (345)
T ss_pred hhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhH------
Confidence 6655321 11111 111111 000 0000 126788888875444321
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCcEEEEEccc
Q 047388 243 ELADRQQKLGQMLSRLTKISEEFNVAVYMTNQV 275 (352)
Q Consensus 243 ~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~ 275 (352)
. .-.++-+.|+++..++++++|+++|-
T Consensus 171 --~----vr~~lr~wLr~~~~~~~~ttvfVTHD 197 (345)
T COG1118 171 --K----VRKELRRWLRKLHDRLGVTTVFVTHD 197 (345)
T ss_pred --H----HHHHHHHHHHHHHHhhCceEEEEeCC
Confidence 1 12355667788888999999999994
No 110
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=4e-08 Score=90.45 Aligned_cols=45 Identities=13% Similarity=0.302 Sum_probs=34.2
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+|+++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-..
T Consensus 158 ~p~lllLDEPt~gLD~--------~~~----~~l~~~l~~l~~~~~~tilivsH~~~ 202 (279)
T PRK13635 158 QPDIIILDEATSMLDP--------RGR----REVLETVRQLKEQKGITVLSITHDLD 202 (279)
T ss_pred CCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 7999999998876432 222 37777888888878999999998654
No 111
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=1.5e-07 Score=86.90 Aligned_cols=45 Identities=13% Similarity=0.281 Sum_probs=34.2
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+|+++++|+.++-+.. ..+ ..+...|++++++.|.+||+++|-..
T Consensus 159 ~p~lLilDEPt~gLD~--------~~~----~~l~~~l~~l~~~~g~tillvsH~~~ 203 (283)
T PRK13636 159 EPKVLVLDEPTAGLDP--------MGV----SEIMKLLVEMQKELGLTIIIATHDID 203 (283)
T ss_pred CCCEEEEeCCccCCCH--------HHH----HHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 7899999998876531 222 26777788888877999999998654
No 112
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.70 E-value=8.6e-08 Score=83.07 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=24.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+.+|+++.|.|++|+|||||+..++.
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999996653
No 113
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.69 E-value=1.9e-07 Score=82.85 Aligned_cols=45 Identities=9% Similarity=0.192 Sum_probs=33.3
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-..
T Consensus 159 ~p~illlDEPt~~LD~--------~~~----~~l~~~l~~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 159 QPSLVLADEPTGNLDN--------NNA----KIIFDLMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred CCCEEEEeCCCCcCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7899999998876431 222 26777788888777899999999653
No 114
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.69 E-value=2.8e-08 Score=88.20 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=41.7
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-.. .+...
T Consensus 149 ~p~lllLDEPt~~LD~--------~~~----~~~~~~l~~~~~~~~~tiii~sH~~~------------------~~~~~ 198 (220)
T cd03293 149 DPDVLLLDEPFSALDA--------LTR----EQLQEELLDIWRETGKTVLLVTHDID------------------EAVFL 198 (220)
T ss_pred CCCEEEECCCCCCCCH--------HHH----HHHHHHHHHHHHHcCCEEEEEecCHH------------------HHHHh
Confidence 7899999998876432 222 26777788887777899999998653 13456
Q ss_pred cceEEEEE
Q 047388 301 VTIRLMFR 308 (352)
Q Consensus 301 ~~~~i~L~ 308 (352)
+|.++.|.
T Consensus 199 ~d~i~~l~ 206 (220)
T cd03293 199 ADRVVVLS 206 (220)
T ss_pred CCEEEEEE
Confidence 67777776
No 115
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=1.1e-07 Score=88.01 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=34.8
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+|+++++|+.++-+.. .. ...+.+.|+.++++.|.|||+++|-..
T Consensus 163 ~P~llllDEPt~~LD~--------~~----~~~l~~~L~~l~~~~g~tviiitHd~~ 207 (290)
T PRK13634 163 EPEVLVLDEPTAGLDP--------KG----RKEMMEMFYKLHKEKGLTTVLVTHSME 207 (290)
T ss_pred CCCEEEEECCcccCCH--------HH----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7899999998876532 11 237778888888888999999999654
No 116
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.69 E-value=2.9e-07 Score=85.80 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=32.9
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.+|+++++|+.++-+.+ ..+ ..+.+.|++++++ |.+||+++|-..
T Consensus 141 ~~p~lllLDEPt~gLD~--------~~~----~~l~~~l~~~~~~-g~tvi~~sH~~~ 185 (302)
T TIGR01188 141 HQPDVLFLDEPTTGLDP--------RTR----RAIWDYIRALKEE-GVTILLTTHYME 185 (302)
T ss_pred cCCCEEEEeCCCcCCCH--------HHH----HHHHHHHHHHHhC-CCEEEEECCCHH
Confidence 37999999998877532 222 2666777777654 899999999654
No 117
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.69 E-value=3.5e-08 Score=87.41 Aligned_cols=45 Identities=7% Similarity=0.161 Sum_probs=33.6
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-..
T Consensus 158 ~p~lllLDEP~~~LD~--------~~~----~~l~~~l~~~~~~~~~tii~~sH~~~ 202 (218)
T cd03255 158 DPKIILADEPTGNLDS--------ETG----KEVMELLRELNKEAGTTIVVVTHDPE 202 (218)
T ss_pred CCCEEEEcCCcccCCH--------HHH----HHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 7899999998876532 222 36777788887767899999999653
No 118
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=3.1e-08 Score=94.16 Aligned_cols=135 Identities=12% Similarity=0.143 Sum_probs=72.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCC--Chhh--HHHHHHHcCCCc-ccccccEE
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTF--RPDR--IVPIAERFGMDP-GAVLDNII 196 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~--~~~r--l~~~~~~~~~~~-~~~~~~i~ 196 (352)
-+++|+++.|.||||||||||+..++.. .++ ..+-++++.+.-. .+.+ +..+.+.+.+.+ ..+.+|+.
T Consensus 26 ~i~~Ge~~~llG~sGsGKSTLLr~iaGl--~~p-----~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~ 98 (356)
T PRK11650 26 DVADGEFIVLVGPSGCGKSTLLRMVAGL--ERI-----TSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMA 98 (356)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCC--CCC-----CceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHH
Confidence 4779999999999999999999976543 222 2334555554221 1110 111112222222 23444443
Q ss_pred EEec---CCHHH----HHHHHHH-----------------------HHHHhhcCCceEEEEcccccchhcccCCCcchHH
Q 047388 197 YARA---YTYEH----QYNLLLG-----------------------LAAKMSEEPFRLLIVDSVIALFRVDFTGRGELAD 246 (352)
Q Consensus 197 ~~~~---~~~~~----~~~~l~~-----------------------l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~ 246 (352)
+... .+..+ ..+++.. +.+.+ -.+|+++++|+..+-+. ...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL-~~~P~llLLDEP~s~LD--------~~~ 169 (356)
T PRK11650 99 YGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAI-VREPAVFLFDEPLSNLD--------AKL 169 (356)
T ss_pred hHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCC--------HHH
Confidence 3211 11111 1111110 00111 13799999998876542 122
Q ss_pred HHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 247 RQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 247 r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
| ..+...|+++.++.++++|+++|-.
T Consensus 170 r----~~l~~~l~~l~~~~g~tii~vTHd~ 195 (356)
T PRK11650 170 R----VQMRLEIQRLHRRLKTTSLYVTHDQ 195 (356)
T ss_pred H----HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 2 2677778888888899999999943
No 119
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.69 E-value=4.4e-08 Score=83.11 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=24.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAG 49 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999999997654
No 120
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.69 E-value=6.3e-08 Score=85.49 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=42.3
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-.. .+...
T Consensus 148 ~p~~lllDEPt~~LD~--------~~~----~~l~~~l~~~~~~~~~tii~~sH~~~------------------~~~~~ 197 (213)
T cd03259 148 EPSLLLLDEPLSALDA--------KLR----EELREELKELQRELGITTIYVTHDQE------------------EALAL 197 (213)
T ss_pred CCCEEEEcCCcccCCH--------HHH----HHHHHHHHHHHHHcCCEEEEEecCHH------------------HHHHh
Confidence 7899999998877532 222 36777788887777999999999653 13456
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 198 ~d~v~~l~~ 206 (213)
T cd03259 198 ADRIAVMNE 206 (213)
T ss_pred cCEEEEEEC
Confidence 677777764
No 121
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=98.68 E-value=2.8e-07 Score=85.93 Aligned_cols=174 Identities=16% Similarity=0.226 Sum_probs=109.1
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHH--HcCCCccccc---cc----
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAE--RFGMDPGAVL---DN---- 194 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~--~~~~~~~~~~---~~---- 194 (352)
..|...+|=|.||+|||+|++.++-... ..+.++|+++.-+ +.++.++.- +-.+++..++ ++
T Consensus 8 ~~G~TLLIKG~PGTGKTtfaLelL~~l~-------~~~~v~YISTRVd--~d~vy~~y~~~~~~i~~~~vlDatQd~~~~ 78 (484)
T PF07088_consen 8 EPGQTLLIKGEPGTGKTTFALELLNSLK-------DHGNVMYISTRVD--QDTVYEMYPWIEESIDPTNVLDATQDPFEL 78 (484)
T ss_pred CCCcEEEEecCCCCCceeeehhhHHHHh-------ccCCeEEEEeccC--HHHHHHhhhhhccccChhhhhhhccchhhc
Confidence 5799999999999999999998865443 4678999999854 776665541 1112211111 11
Q ss_pred ----EEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEE
Q 047388 195 ----IIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVY 270 (352)
Q Consensus 195 ----i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~vi 270 (352)
...........+.++++++.. ..+..+|++||.-+++.. .+. ....++ .+..+.+.|..+|++.++-+|
T Consensus 79 ~~~~~vp~~~l~~ds~~~f~~~i~~---~~k~~iI~~DSWdaiiey-la~--~~~~~e-d~e~l~~dLv~lard~g~~LI 151 (484)
T PF07088_consen 79 PLDKDVPFERLDIDSFRDFVDKINE---AGKKPIIAFDSWDAIIEY-LAE--EHDEPE-DIETLTNDLVELARDMGINLI 151 (484)
T ss_pred cccccCcccccCHHHHHHHHHHhhh---cccCcEEEEecHHHHHHH-hhh--hhcCcH-HHHHHHHHHHHHHhhcCceEE
Confidence 000111234445555554322 135678999996665431 000 111222 245677788889999999999
Q ss_pred EEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEe-ec--C-CeEEEEEEeCCCCCccc
Q 047388 271 MTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK-GK--G-EQRVCKVFDAPNLPEAE 329 (352)
Q Consensus 271 v~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~-~~--~-~~R~~~i~Ks~~~~~~~ 329 (352)
++...... ..+++.+|.++.|.- .. | ..|.+++.|-|+.+-+.
T Consensus 152 lVsEsa~~----------------~~LdYivDGVVTL~v~~derGR~~R~L~LeKLRGV~I~q 198 (484)
T PF07088_consen 152 LVSESAEN----------------EPLDYIVDGVVTLQVKNDERGRTRRYLRLEKLRGVRIKQ 198 (484)
T ss_pred EEEecCCC----------------CcchheeeeEEEEEeccccCCceEEEEEehhhcCcccCC
Confidence 98776542 237889999999962 11 2 35889999999877654
No 122
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.68 E-value=1.2e-07 Score=90.75 Aligned_cols=144 Identities=22% Similarity=0.315 Sum_probs=82.9
Q ss_pred ccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC-CCC-hhhHHHHHHHc
Q 047388 107 KITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG-TFR-PDRIVPIAERF 184 (352)
Q Consensus 107 ~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~-~~~-~~rl~~~~~~~ 184 (352)
+++ |+..+|.+ .=-+++|+|..|.|++|+|||||+..+... ..| ..+-+|++... .+. |. -+.+.
T Consensus 13 ~f~-~~~And~V-~l~v~~GeIHaLLGENGAGKSTLm~iL~G~-~~P------~~GeI~v~G~~v~~~sP~----dA~~~ 79 (501)
T COG3845 13 RFP-GVVANDDV-SLSVKKGEIHALLGENGAGKSTLMKILFGL-YQP------DSGEIRVDGKEVRIKSPR----DAIRL 79 (501)
T ss_pred EcC-CEEecCce-eeeecCCcEEEEeccCCCCHHHHHHHHhCc-ccC------CcceEEECCEEeccCCHH----HHHHc
Confidence 344 66666664 247999999999999999999999855433 332 33445555432 111 11 11222
Q ss_pred CCC---------c-ccccccEEEEecC------CHHHHHHHHHHHH---------------------------HHhhcCC
Q 047388 185 GMD---------P-GAVLDNIIYARAY------TYEHQYNLLLGLA---------------------------AKMSEEP 221 (352)
Q Consensus 185 ~~~---------~-~~~~~~i~~~~~~------~~~~~~~~l~~l~---------------------------~~l~~~~ 221 (352)
|+. + -++.+|+.+.... +.......+.++. +.+ -.+
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaL-yr~ 158 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKAL-YRG 158 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHH-hcC
Confidence 211 1 1344444433221 1111111111111 111 137
Q ss_pred ceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 222 FRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 222 ~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
++++|+|+.++.+.+ +++.+++..|+++++ .|.+||+++|--.
T Consensus 159 a~iLILDEPTaVLTP------------~E~~~lf~~l~~l~~-~G~tIi~ITHKL~ 201 (501)
T COG3845 159 ARLLILDEPTAVLTP------------QEADELFEILRRLAA-EGKTIIFITHKLK 201 (501)
T ss_pred CCEEEEcCCcccCCH------------HHHHHHHHHHHHHHH-CCCEEEEEeccHH
Confidence 899999999998754 234588888998876 4999999999543
No 123
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.68 E-value=8.8e-08 Score=81.94 Aligned_cols=128 Identities=16% Similarity=0.139 Sum_probs=74.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
-+++|+++.|.|++|+|||||+..++... .| ..+.+ +++... .++.++ +.. .
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p-----~~G~i-~~~g~~-------------i~~~~q----~~~----L 72 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQL-IP-----NGDND-EWDGIT-------------PVYKPQ----YID----L 72 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCC-CC-----CCcEE-EECCEE-------------EEEEcc----cCC----C
Confidence 56899999999999999999999665432 22 23343 333211 111110 000 2
Q ss_pred CHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCC
Q 047388 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGG 281 (352)
Q Consensus 202 ~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~ 281 (352)
+..+ .+.+. +.+.+. .+++++++|+.++.+.. ..+ ..+.+.|.+++++.+.+||+++|-...
T Consensus 73 SgGq-~qrv~-laral~-~~p~lllLDEPts~LD~--------~~~----~~l~~~l~~~~~~~~~tiiivsH~~~~--- 134 (177)
T cd03222 73 SGGE-LQRVA-IAAALL-RNATFYLFDEPSAYLDI--------EQR----LNAARAIRRLSEEGKKTALVVEHDLAV--- 134 (177)
T ss_pred CHHH-HHHHH-HHHHHh-cCCCEEEEECCcccCCH--------HHH----HHHHHHHHHHHHcCCCEEEEEECCHHH---
Confidence 2222 22222 222222 37899999998876432 222 266677777766655899999996541
Q ss_pred CcccCCCCCCCcchhhhhccceEEEEEee
Q 047388 282 GVFISDPKKPAGGHVLAHAVTIRLMFRKG 310 (352)
Q Consensus 282 ~~~~~~~~~~~gg~~~~~~~~~~i~L~~~ 310 (352)
+...++..+.+...
T Consensus 135 ---------------~~~~~d~i~~l~~~ 148 (177)
T cd03222 135 ---------------LDYLSDRIHVFEGE 148 (177)
T ss_pred ---------------HHHhCCEEEEEcCC
Confidence 34466777777654
No 124
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.68 E-value=6.6e-08 Score=89.17 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=33.8
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+|+++++|+.++-+.. ..+ ..+...|++++++.+.+||+++|-..
T Consensus 161 ~P~llllDEPt~gLD~--------~~~----~~l~~~l~~l~~~~g~tvli~tH~~~ 205 (282)
T PRK13640 161 EPKIIILDESTSMLDP--------AGK----EQILKLIRKLKKKNNLTVISITHDID 205 (282)
T ss_pred CCCEEEEECCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 7899999998876432 222 36777788888777999999998653
No 125
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.68 E-value=1.7e-08 Score=95.96 Aligned_cols=136 Identities=18% Similarity=0.276 Sum_probs=74.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCC--ChhhHHHH-HHHc-------CCCc-cc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTF--RPDRIVPI-AERF-------GMDP-GA 190 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~--~~~rl~~~-~~~~-------~~~~-~~ 190 (352)
-+++|+++.|.|++|||||||+..++.. .++ ..+-++++.+... ++..++.. .+.+ ++.+ .+
T Consensus 15 ~i~~Gei~~l~G~sGsGKSTLLr~L~Gl--~~p-----~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~T 87 (363)
T TIGR01186 15 AIAKGEIFVIMGLSGSGKSTTVRMLNRL--IEP-----TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMT 87 (363)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCC--CCC-----CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCC
Confidence 4789999999999999999999966543 332 2334566665322 22222111 1122 2222 13
Q ss_pred ccccEEEEec---CCHHH----HHHHHHH-----------------------HHHHhhcCCceEEEEcccccchhcccCC
Q 047388 191 VLDNIIYARA---YTYEH----QYNLLLG-----------------------LAAKMSEEPFRLLIVDSVIALFRVDFTG 240 (352)
Q Consensus 191 ~~~~i~~~~~---~~~~~----~~~~l~~-----------------------l~~~l~~~~~~lvvIDsl~~l~~~~~~~ 240 (352)
+.+|+.+... ....+ ..+++.. +.+.+ -.+++++++|+..+-+.+
T Consensus 88 V~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL-~~~p~iLLlDEP~saLD~---- 162 (363)
T TIGR01186 88 ILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARAL-AAEPDILLMDEAFSALDP---- 162 (363)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCH----
Confidence 4444432111 11111 1111110 00111 137899999987766432
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 241 RGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 241 ~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
..| ..+.+.|.++.++.+.|||+++|-..
T Consensus 163 ----~~r----~~l~~~l~~l~~~~~~Tii~vTHd~~ 191 (363)
T TIGR01186 163 ----LIR----DSMQDELKKLQATLQKTIVFITHDLD 191 (363)
T ss_pred ----HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 222 26777778887778999999999554
No 126
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.68 E-value=2e-07 Score=88.17 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=33.4
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.+|+++++|+.++-+.+ ..| ..+.+.|+++++ .|.+||+++|-..
T Consensus 189 ~~P~lLiLDEPt~gLD~--------~~r----~~l~~~l~~l~~-~g~tilisSH~l~ 233 (340)
T PRK13536 189 NDPQLLILDEPTTGLDP--------HAR----HLIWERLRSLLA-RGKTILLTTHFME 233 (340)
T ss_pred cCCCEEEEECCCCCCCH--------HHH----HHHHHHHHHHHh-CCCEEEEECCCHH
Confidence 37999999998876532 222 267777788765 4899999999765
No 127
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=3e-07 Score=82.45 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=42.2
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-.. .+...
T Consensus 154 ~p~llllDEPt~~LD~--------~~~----~~l~~~l~~~~~~~~~tvi~vsH~~~------------------~~~~~ 203 (235)
T cd03261 154 DPELLLYDEPTAGLDP--------IAS----GVIDDLIRSLKKELGLTSIMVTHDLD------------------TAFAI 203 (235)
T ss_pred CCCEEEecCCcccCCH--------HHH----HHHHHHHHHHHHhcCcEEEEEecCHH------------------HHHHh
Confidence 7899999998876432 222 36777788887777899999999653 13456
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 204 ~d~v~~l~~ 212 (235)
T cd03261 204 ADRIAVLYD 212 (235)
T ss_pred cCEEEEEEC
Confidence 777777764
No 128
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.67 E-value=2.4e-07 Score=81.76 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=24.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999997764
No 129
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=1.5e-07 Score=86.65 Aligned_cols=45 Identities=13% Similarity=0.280 Sum_probs=33.9
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++++.+||+++|-..
T Consensus 155 ~p~llilDEPt~gLD~--------~~~----~~l~~~l~~l~~~~g~tvli~tH~~~ 199 (277)
T PRK13652 155 EPQVLVLDEPTAGLDP--------QGV----KELIDFLNDLPETYGMTVIFSTHQLD 199 (277)
T ss_pred CCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 7899999998876432 222 26777788888777999999999654
No 130
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.67 E-value=2.7e-07 Score=82.13 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=35.8
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
|+|+++++|+.+--+. ...+ ..+.+.|+.+++++++||++++|...
T Consensus 173 h~p~VLfLDEpTvgLD--------V~aq----~~ir~Flke~n~~~~aTVllTTH~~~ 218 (325)
T COG4586 173 HPPKVLFLDEPTVGLD--------VNAQ----ANIREFLKEYNEERQATVLLTTHIFD 218 (325)
T ss_pred CCCcEEEecCCccCcc--------hhHH----HHHHHHHHHHHHhhCceEEEEecchh
Confidence 5899999999875432 1222 36777899999999999999999775
No 131
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=1.2e-07 Score=87.29 Aligned_cols=45 Identities=9% Similarity=0.346 Sum_probs=33.9
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+|+++++|+.++-+.. ..+ ..+...|++++++.+.+||+++|-..
T Consensus 162 ~p~llllDEPt~gLD~--------~~~----~~l~~~l~~l~~~~g~tillvtH~~~ 206 (280)
T PRK13633 162 RPECIIFDEPTAMLDP--------SGR----REVVNTIKELNKKYGITIILITHYME 206 (280)
T ss_pred CCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEecChH
Confidence 7899999998876432 222 26777788887777999999998654
No 132
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.66 E-value=4e-07 Score=75.88 Aligned_cols=43 Identities=28% Similarity=0.364 Sum_probs=34.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
-+.||++..|+|++|||||||+..++..+.. ..+.+.|..-..
T Consensus 28 ~l~PGeVLgiVGESGSGKtTLL~~is~rl~p------~~G~v~Y~~r~~ 70 (258)
T COG4107 28 DLYPGEVLGIVGESGSGKTTLLKCISGRLTP------DAGTVTYRMRDG 70 (258)
T ss_pred eecCCcEEEEEecCCCcHHhHHHHHhcccCC------CCCeEEEEcCCC
Confidence 4789999999999999999999977655544 567788876544
No 133
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.66 E-value=5e-08 Score=93.30 Aligned_cols=135 Identities=13% Similarity=0.229 Sum_probs=73.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCC--Chhh--HHHHHHHcCCCcc-cccccEE
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTF--RPDR--IVPIAERFGMDPG-AVLDNII 196 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~--~~~r--l~~~~~~~~~~~~-~~~~~i~ 196 (352)
-+.+|+++.|.||||||||||+..++.. .++ ..+-++++.+.-. .+.+ +..+.+.+.+.+. .+.+|+.
T Consensus 36 ~i~~Ge~~~LlGpsGsGKSTLLr~IaGl--~~p-----~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~ 108 (375)
T PRK09452 36 TINNGEFLTLLGPSGCGKTTVLRLIAGF--ETP-----DSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVA 108 (375)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC--CCC-----CceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHH
Confidence 5789999999999999999999976643 222 2334455544211 1110 1111222222221 3445543
Q ss_pred EEec---CCHHH----HHHHHHH-----------------------HHHHhhcCCceEEEEcccccchhcccCCCcchHH
Q 047388 197 YARA---YTYEH----QYNLLLG-----------------------LAAKMSEEPFRLLIVDSVIALFRVDFTGRGELAD 246 (352)
Q Consensus 197 ~~~~---~~~~~----~~~~l~~-----------------------l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~ 246 (352)
+... ....+ ..+.+.. +.+.+ -.+|+++++|+..+-+. ...
T Consensus 109 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL-~~~P~llLLDEP~s~LD--------~~~ 179 (375)
T PRK09452 109 FGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV-VNKPKVLLLDESLSALD--------YKL 179 (375)
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH-hcCCCEEEEeCCCCcCC--------HHH
Confidence 3210 11111 1111110 01111 13789999998766542 122
Q ss_pred HHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 247 RQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 247 r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
| ..+...|++++++.++++|+++|-.
T Consensus 180 r----~~l~~~L~~l~~~~g~tiI~vTHd~ 205 (375)
T PRK09452 180 R----KQMQNELKALQRKLGITFVFVTHDQ 205 (375)
T ss_pred H----HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 2 2677788888888899999999943
No 134
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=4.9e-08 Score=92.62 Aligned_cols=45 Identities=13% Similarity=0.280 Sum_probs=33.3
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+|+++++|+..+-+. ...| .++...|+++.++.++++|+++|-..
T Consensus 154 ~P~lLLLDEP~s~LD--------~~~r----~~l~~~l~~l~~~~g~tii~vTHd~~ 198 (351)
T PRK11432 154 KPKVLLFDEPLSNLD--------ANLR----RSMREKIRELQQQFNITSLYVTHDQS 198 (351)
T ss_pred CCCEEEEcCCcccCC--------HHHH----HHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 789999998776542 1222 26677788888888999999999543
No 135
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.66 E-value=5e-07 Score=81.92 Aligned_cols=139 Identities=15% Similarity=0.211 Sum_probs=70.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCC----CCCeEEEEeCCCCCChh---hHHHHHHH-cCCCcc---c
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRG----GNGKVAYIDTEGTFRPD---RIVPIAER-FGMDPG---A 190 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg----~~~~vl~i~~e~~~~~~---rl~~~~~~-~~~~~~---~ 190 (352)
-+++|+++.|.|++|+|||||+..++.. .++..|. ....+.|+..+..+... .+...... .+...+ +
T Consensus 26 ~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl--~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 103 (251)
T PRK09544 26 ELKPGKILTLLGPNGAGKSTLVRVVLGL--VAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILP 103 (251)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHH
Confidence 4789999999999999999999976543 3333221 11235555433222110 11111100 000000 0
Q ss_pred ccccEEE-------EecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHH
Q 047388 191 VLDNIIY-------ARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISE 263 (352)
Q Consensus 191 ~~~~i~~-------~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~ 263 (352)
+++.+-+ ....+..+ ...+. +...+ -.+++++++|+.++-+.. ..+ ..+.+.|+++++
T Consensus 104 ~l~~~gl~~~~~~~~~~LSgGq-~qrv~-laral-~~~p~lllLDEPt~~LD~--------~~~----~~l~~~L~~~~~ 168 (251)
T PRK09544 104 ALKRVQAGHLIDAPMQKLSGGE-TQRVL-LARAL-LNRPQLLVLDEPTQGVDV--------NGQ----VALYDLIDQLRR 168 (251)
T ss_pred HHHHcCChHHHhCChhhCCHHH-HHHHH-HHHHH-hcCCCEEEEeCCCcCCCH--------HHH----HHHHHHHHHHHH
Confidence 0000000 00111111 11111 11122 137899999998876432 222 267777888877
Q ss_pred HhCcEEEEEccccc
Q 047388 264 EFNVAVYMTNQVIA 277 (352)
Q Consensus 264 ~~~~~viv~~h~~~ 277 (352)
+++.+||+++|-..
T Consensus 169 ~~g~tiiivsH~~~ 182 (251)
T PRK09544 169 ELDCAVLMVSHDLH 182 (251)
T ss_pred hcCCEEEEEecCHH
Confidence 77899999998654
No 136
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.66 E-value=5.3e-08 Score=92.47 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=33.1
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
+++++++|+..+-+. ...| ..+.+.|+++.+++++++|+++|-.
T Consensus 154 ~P~llLLDEP~s~LD--------~~~r----~~l~~~L~~l~~~~g~tii~vTHd~ 197 (353)
T PRK10851 154 EPQILLLDEPFGALD--------AQVR----KELRRWLRQLHEELKFTSVFVTHDQ 197 (353)
T ss_pred CCCEEEEeCCCccCC--------HHHH----HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 789999998876642 1222 2677778888888899999999944
No 137
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=5.7e-08 Score=88.30 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=42.3
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhh
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAH 299 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~ 299 (352)
.+++++++|+.++-+.. ..+ ..+...|++++++.+.+||+++|-.. .+..
T Consensus 145 ~~p~lllLDEPt~~LD~--------~~~----~~l~~~L~~~~~~~g~tviivsH~~~------------------~~~~ 194 (255)
T PRK11248 145 ANPQLLLLDEPFGALDA--------FTR----EQMQTLLLKLWQETGKQVLLITHDIE------------------EAVF 194 (255)
T ss_pred cCCCEEEEeCCCccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHH
Confidence 37899999998876432 222 26677777877667899999999653 2455
Q ss_pred ccceEEEEEe
Q 047388 300 AVTIRLMFRK 309 (352)
Q Consensus 300 ~~~~~i~L~~ 309 (352)
.+|.++.|..
T Consensus 195 ~~d~i~~l~~ 204 (255)
T PRK11248 195 MATELVLLSP 204 (255)
T ss_pred hCCEEEEEeC
Confidence 6777777764
No 138
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.65 E-value=1.2e-07 Score=83.64 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 23 ~i~~G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 23 TIKKGEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999999997654
No 139
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=4.3e-07 Score=81.31 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=33.3
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-..
T Consensus 163 ~p~lllLDEPt~~LD~--------~~~----~~l~~~l~~~~~~~g~tvii~sH~~~ 207 (233)
T PRK11629 163 NPRLVLADEPTGNLDA--------RNA----DSIFQLLGELNRLQGTAFLVVTHDLQ 207 (233)
T ss_pred CCCEEEEeCCCCCCCH--------HHH----HHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 7899999998876432 222 26777788887767899999999654
No 140
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.65 E-value=6.4e-08 Score=85.41 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=34.0
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++-+.. ..+ ..+...|++++++.+.+||+++|-..
T Consensus 148 ~p~llllDEPt~~LD~--------~~~----~~l~~~l~~~~~~~~~tvi~~sH~~~ 192 (213)
T cd03301 148 EPKVFLMDEPLSNLDA--------KLR----VQMRAELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred CCCEEEEcCCcccCCH--------HHH----HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 7899999998876532 222 36777888888777999999999653
No 141
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.64 E-value=3.5e-07 Score=80.25 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 20 TIEKGKMYAIIGESGSGKSTLLNIIGL 46 (206)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhc
Confidence 477999999999999999999997654
No 142
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.64 E-value=2.3e-07 Score=90.86 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=34.8
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
+|+++|.|+.+..+.. . ...++++.|+++.+++|+++|+++|-.
T Consensus 172 ~P~LLIaDEPTTaLDv--------t----~q~qIL~llk~l~~e~g~a~l~ITHDl 215 (539)
T COG1123 172 KPKLLIADEPTTALDV--------T----TQAQILDLLKDLQRELGMAVLFITHDL 215 (539)
T ss_pred CCCEEEECCCccccCH--------H----HHHHHHHHHHHHHHHcCcEEEEEcCCH
Confidence 6888888888776432 1 124899999999999999999999954
No 143
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.64 E-value=1.5e-06 Score=76.73 Aligned_cols=164 Identities=15% Similarity=0.123 Sum_probs=90.1
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEe---cCC
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYAR---AYT 202 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~---~~~ 202 (352)
...+.|+|+||+|||+++.+++ ++.++++.+.. ..++ .+. .++.+.+ ...
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~-------------~~~~~~~~d~~--~~~l------~g~------~~~~v~~~d~~~~ 64 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP-------------GKTLVLSFDMS--SKVL------IGD------ENVDIADHDDMPP 64 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC-------------CCCEEEecccc--chhc------cCC------CCCceeecCCCCC
Confidence 3569999999999999998652 35677787764 2111 111 1222222 223
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEcccccchhccc--------CC---CcchHHHHHHHHHHHHHHHHHHHHhCcEEEE
Q 047388 203 YEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDF--------TG---RGELADRQQKLGQMLSRLTKISEEFNVAVYM 271 (352)
Q Consensus 203 ~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~--------~~---~g~~~~r~~~l~~i~~~L~~la~~~~~~viv 271 (352)
.+...+.+..+... ..+++.||||+++.+.+.-+ ++ ....+. .-..+++.|+.|.. .++.||+
T Consensus 65 ~~~~~d~l~~~~~~--~~~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~---~~~~fl~~l~~L~~-~g~nII~ 138 (220)
T TIGR01618 65 IQAMVEFYVMQNIQ--AVKYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQK---LDLWFLDLLTVLKE-SNKNIYA 138 (220)
T ss_pred HHHHHHHHHHHHhc--cccCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHH---HHHHHHHHHHHHHh-CCCcEEE
Confidence 34444444433222 24789999999998865210 00 111222 22356666777744 8999999
Q ss_pred EcccccCCCCCcccCC---CCCCCcch----hhhhccceEEEEEee-cCCeEEEEEEeCC
Q 047388 272 TNQVIADPGGGVFISD---PKKPAGGH----VLAHAVTIRLMFRKG-KGEQRVCKVFDAP 323 (352)
Q Consensus 272 ~~h~~~~~~~~~~~~~---~~~~~gg~----~~~~~~~~~i~L~~~-~~~~R~~~i~Ks~ 323 (352)
++|...+.... ..+. ...|.... .+.-.+|.+..+... +...|.+...-+.
T Consensus 139 tAhe~~~~~~d-e~G~~~~r~~P~i~~K~~n~l~G~~DvV~rl~i~~~~g~R~~~~~~~~ 197 (220)
T TIGR01618 139 TAWELTNQSSG-ESGQIYNRYQPDIREKVLNAFLGLTDVVGRIVLNGETGERGFILDPSK 197 (220)
T ss_pred EEeeccccccC-CCCCCcceechhhhhhHHHhhcccccEEEEEEEccCCCceEEEECCCC
Confidence 99985421110 1111 12344433 455577888877632 2244666544333
No 144
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.64 E-value=3.9e-07 Score=78.47 Aligned_cols=134 Identities=18% Similarity=0.185 Sum_probs=68.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
-+++|+++.|.|++|+|||||+..++.. .++ ..+ .++++.+.......-....+..++-+++... ..+....
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~----~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~-~~~~~~~ 93 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGL--RPP----ASG-EITLDGKPVTRRSPRDAIRAGIAYVPEDRKR-EGLVLDL 93 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC--CCC----CCc-eEEECCEECCccCHHHHHhCCeEEecCCccc-CcccCCC
Confidence 5789999999999999999999966543 222 233 3455554321110001111122322211000 0011111
Q ss_pred CHHHHHHHH--------H--HHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEE
Q 047388 202 TYEHQYNLL--------L--GLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYM 271 (352)
Q Consensus 202 ~~~~~~~~l--------~--~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv 271 (352)
+..+..... . .+.+.+ -.+++++++|+.++-+.. ..+ ..+.+.|+++++ .+.++|+
T Consensus 94 t~~e~l~~~~~LS~G~~qrl~la~al-~~~p~llllDEP~~~LD~--------~~~----~~l~~~l~~~~~-~~~tiii 159 (182)
T cd03215 94 SVAENIALSSLLSGGNQQKVVLARWL-ARDPRVLILDEPTRGVDV--------GAK----AEIYRLIRELAD-AGKAVLL 159 (182)
T ss_pred cHHHHHHHHhhcCHHHHHHHHHHHHH-ccCCCEEEECCCCcCCCH--------HHH----HHHHHHHHHHHH-CCCEEEE
Confidence 122211110 0 111122 137899999998876532 222 256667777765 4889999
Q ss_pred Eccccc
Q 047388 272 TNQVIA 277 (352)
Q Consensus 272 ~~h~~~ 277 (352)
++|-..
T Consensus 160 ~sh~~~ 165 (182)
T cd03215 160 ISSELD 165 (182)
T ss_pred EeCCHH
Confidence 988653
No 145
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=2.6e-07 Score=86.94 Aligned_cols=45 Identities=11% Similarity=0.287 Sum_probs=34.9
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++|+|+.++.+.. ..+ .++++.|+++.++.+.++|+++|-..
T Consensus 172 ~P~lLilDEPts~LD~--------~~~----~~i~~lL~~l~~~~g~til~iTHdl~ 216 (327)
T PRK11308 172 DPDVVVADEPVSALDV--------SVQ----AQVLNLMMDLQQELGLSYVFISHDLS 216 (327)
T ss_pred CCCEEEEECCCccCCH--------HHH----HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 7899999998877532 222 37888888998888999999999543
No 146
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=4.5e-07 Score=80.48 Aligned_cols=45 Identities=18% Similarity=0.328 Sum_probs=33.4
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++++.+||+++|-..
T Consensus 149 ~p~llllDEPt~~LD~--------~~~----~~l~~~l~~~~~~~~~tvi~~tH~~~ 193 (220)
T cd03265 149 RPEVLFLDEPTIGLDP--------QTR----AHVWEYIEKLKEEFGMTILLTTHYME 193 (220)
T ss_pred CCCEEEEcCCccCCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7899999998876432 112 36777788888777899999999543
No 147
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.63 E-value=5.2e-07 Score=79.60 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=24.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|||||||+..++.
T Consensus 23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G 49 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYK 49 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999999997764
No 148
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.63 E-value=1.8e-07 Score=85.57 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=32.4
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQV 275 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~ 275 (352)
+|+++|-|+.+..+.. ....++++.|+++.+++|.++|+++|-
T Consensus 171 ~P~LlIADEPTTALDv------------t~QaqIl~Ll~~l~~e~~~aiilITHD 213 (316)
T COG0444 171 NPKLLIADEPTTALDV------------TVQAQILDLLKELQREKGTALILITHD 213 (316)
T ss_pred CCCEEEeCCCcchhhH------------HHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5677777776655321 123589999999999999999999993
No 149
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=9e-08 Score=86.07 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=41.6
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+...|++++++.+.+||+++|-.. .+...
T Consensus 154 ~p~llllDEP~~~LD~--------~~~----~~l~~~l~~~~~~~~~tvii~sH~~~------------------~~~~~ 203 (239)
T cd03296 154 EPKVLLLDEPFGALDA--------KVR----KELRRWLRRLHDELHVTTVFVTHDQE------------------EALEV 203 (239)
T ss_pred CCCEEEEcCCcccCCH--------HHH----HHHHHHHHHHHHHcCCEEEEEeCCHH------------------HHHHh
Confidence 7899999998876532 222 26777788888777899999998653 13455
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 204 ~d~i~~l~~ 212 (239)
T cd03296 204 ADRVVVMNK 212 (239)
T ss_pred CCEEEEEEC
Confidence 677777754
No 150
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=1.2e-07 Score=86.89 Aligned_cols=60 Identities=10% Similarity=0.143 Sum_probs=42.4
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhh
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAH 299 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~ 299 (352)
.+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-.. .+..
T Consensus 177 ~~p~illLDEPt~~LD~--------~~~----~~l~~~l~~~~~~~g~tiii~tH~~~------------------~~~~ 226 (269)
T cd03294 177 VDPDILLMDEAFSALDP--------LIR----REMQDELLRLQAELQKTIVFITHDLD------------------EALR 226 (269)
T ss_pred cCCCEEEEcCCCccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHH
Confidence 37899999998876432 222 36777788887777899999999653 1355
Q ss_pred ccceEEEEEe
Q 047388 300 AVTIRLMFRK 309 (352)
Q Consensus 300 ~~~~~i~L~~ 309 (352)
.+|.++.|..
T Consensus 227 ~~d~v~~l~~ 236 (269)
T cd03294 227 LGDRIAIMKD 236 (269)
T ss_pred hcCEEEEEEC
Confidence 6777777764
No 151
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.62 E-value=5e-07 Score=80.61 Aligned_cols=45 Identities=9% Similarity=0.131 Sum_probs=33.8
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.+.-+.. ..+ ..+...|++++++++.+||+++|-..
T Consensus 164 ~p~llllDEPt~~LD~--------~~~----~~l~~~l~~~~~~~~~tii~~sH~~~ 208 (228)
T PRK10584 164 RPDVLFADEPTGNLDR--------QTG----DKIADLLFSLNREHGTTLILVTHDLQ 208 (228)
T ss_pred CCCEEEEeCCCCCCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 7899999998876431 222 36777788888777999999998653
No 152
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=1.4e-07 Score=87.15 Aligned_cols=45 Identities=11% Similarity=0.208 Sum_probs=33.7
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+|+++++|+.++-+.. ..+ ..+.+.|+++.++.+.|||+++|-..
T Consensus 163 ~p~illlDEPt~~LD~--------~~~----~~l~~~l~~l~~~~g~tvl~vtH~~~ 207 (286)
T PRK13646 163 NPDIIVLDEPTAGLDP--------QSK----RQVMRLLKSLQTDENKTIILVSHDMN 207 (286)
T ss_pred CCCEEEEECCcccCCH--------HHH----HHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 7899999998876532 222 26777788887777999999999654
No 153
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.62 E-value=8.4e-07 Score=83.08 Aligned_cols=61 Identities=15% Similarity=0.248 Sum_probs=46.1
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhh
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAH 299 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~ 299 (352)
.+|++|++|+.++.+.. + ...+++..|+.|-+++|.+-++++|--+ .+..
T Consensus 443 LkP~~i~LDEPTSALD~--------S----VQaQvv~LLr~LQ~k~~LsYLFISHDL~------------------VvrA 492 (534)
T COG4172 443 LKPELILLDEPTSALDR--------S----VQAQVLDLLRDLQQKHGLSYLFISHDLA------------------VVRA 492 (534)
T ss_pred cCCcEEEecCCchHhhH--------H----HHHHHHHHHHHHHHHhCCeEEEEeccHH------------------HHHH
Confidence 37999999998876421 1 2258999999999999999999999554 2455
Q ss_pred ccceEEEEEee
Q 047388 300 AVTIRLMFRKG 310 (352)
Q Consensus 300 ~~~~~i~L~~~ 310 (352)
.++.+|.++.+
T Consensus 493 l~~~viVm~~G 503 (534)
T COG4172 493 LCHRVIVMRDG 503 (534)
T ss_pred hhceEEEEeCC
Confidence 67777777653
No 154
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.62 E-value=5.4e-08 Score=92.46 Aligned_cols=45 Identities=13% Similarity=0.249 Sum_probs=33.5
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+|+++++|+..+-+. ...| .++...|+++.++.++|+|+++|-..
T Consensus 152 ~P~llLLDEP~s~LD--------~~~r----~~l~~~L~~l~~~~~~tvi~vTHd~~ 196 (353)
T TIGR03265 152 SPGLLLLDEPLSALD--------ARVR----EHLRTEIRQLQRRLGVTTIMVTHDQE 196 (353)
T ss_pred CCCEEEEcCCcccCC--------HHHH----HHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 789999998776542 1222 26777788888888999999999443
No 155
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.62 E-value=3.9e-07 Score=77.47 Aligned_cols=42 Identities=26% Similarity=0.293 Sum_probs=31.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
-+|+|.+|.|.||+|+|||||+.-++.- .+ ...+.++++.-+
T Consensus 23 ~i~~g~iTs~IGPNGAGKSTLLS~~sRL--~~-----~d~G~i~i~g~~ 64 (252)
T COG4604 23 DIPKGGITSIIGPNGAGKSTLLSMMSRL--LK-----KDSGEITIDGLE 64 (252)
T ss_pred eecCCceeEEECCCCccHHHHHHHHHHh--cc-----ccCceEEEeeee
Confidence 5899999999999999999999854433 33 345567777543
No 156
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.62 E-value=6e-07 Score=76.62 Aligned_cols=42 Identities=31% Similarity=0.413 Sum_probs=31.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
-.+.|+++.|.|++|+||||++.-++. .+.| ..++++++.-+
T Consensus 24 ~ae~Gei~GlLG~NGAGKTT~LRmiat-lL~P------~~G~v~idg~d 65 (245)
T COG4555 24 EAEEGEITGLLGENGAGKTTLLRMIAT-LLIP------DSGKVTIDGVD 65 (245)
T ss_pred EeccceEEEEEcCCCCCchhHHHHHHH-hccC------CCceEEEeecc
Confidence 467899999999999999999996654 4443 34566776544
No 157
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.62 E-value=2.5e-07 Score=84.17 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=33.5
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.+++++++|+.++-+.. ..+ ..+...|++++++.+.+||+++|-..
T Consensus 157 ~~p~lllLDEPt~~LD~--------~~~----~~l~~~l~~~~~~~~~tiii~sH~~~ 202 (258)
T PRK13548 157 GPPRWLLLDEPTSALDL--------AHQ----HHVLRLARQLAHERGLAVIVVLHDLN 202 (258)
T ss_pred CCCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 47899999998876532 222 26777788887567899999999654
No 158
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=1.5e-07 Score=86.47 Aligned_cols=44 Identities=9% Similarity=0.258 Sum_probs=32.8
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+|+++++|+.++.+.. ..+ .++.+.|++++++ |.|||+++|-..
T Consensus 156 ~p~llllDEPt~~LD~--------~~~----~~l~~~l~~~~~~-g~tili~tH~~~ 199 (274)
T PRK13647 156 DPDVIVLDEPMAYLDP--------RGQ----ETLMEILDRLHNQ-GKTVIVATHDVD 199 (274)
T ss_pred CCCEEEEECCCcCCCH--------HHH----HHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 7999999998877532 222 3677778888765 899999999654
No 159
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.61 E-value=3e-07 Score=79.88 Aligned_cols=127 Identities=15% Similarity=0.125 Sum_probs=68.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
-+.+|+++.|.|++|+|||||+..++.....++ . .+.++++.+.. . .......++.++. ..++...
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~----~-~G~i~~~g~~~-~----~~~~~~i~~~~q~----~~~~~~~ 94 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV----I-TGEILINGRPL-D----KNFQRSTGYVEQQ----DVHSPNL 94 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCC----c-ceEEEECCEeh-H----HHhhhceEEeccc----CccccCC
Confidence 578999999999999999999997764322111 2 23455655432 1 1111223322211 0111111
Q ss_pred CHHHHHHHH-------------HHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcE
Q 047388 202 TYEHQYNLL-------------LGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVA 268 (352)
Q Consensus 202 ~~~~~~~~l-------------~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~ 268 (352)
+..+..... -.+.+.+. .+++++++|+.++-+.. ..+ ..+...|+++++ .+.+
T Consensus 95 tv~~~l~~~~~~~~LSgGe~qrv~la~al~-~~p~vlllDEP~~~LD~--------~~~----~~l~~~l~~~~~-~~~t 160 (192)
T cd03232 95 TVREALRFSALLRGLSVEQRKRLTIGVELA-AKPSILFLDEPTSGLDS--------QAA----YNIVRFLKKLAD-SGQA 160 (192)
T ss_pred cHHHHHHHHHHHhcCCHHHhHHHHHHHHHh-cCCcEEEEeCCCcCCCH--------HHH----HHHHHHHHHHHH-cCCE
Confidence 111111110 00111221 37899999998876532 222 266667777765 4899
Q ss_pred EEEEcccc
Q 047388 269 VYMTNQVI 276 (352)
Q Consensus 269 viv~~h~~ 276 (352)
||+++|-.
T Consensus 161 iiivtH~~ 168 (192)
T cd03232 161 ILCTIHQP 168 (192)
T ss_pred EEEEEcCC
Confidence 99998864
No 160
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=1.5e-07 Score=87.01 Aligned_cols=45 Identities=18% Similarity=0.439 Sum_probs=34.0
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+|+++++|+.++-+.. ..+ .++...|++++++.+.|||+++|-..
T Consensus 162 ~P~llllDEPt~gLD~--------~~~----~~l~~~l~~l~~~~g~tvi~vtHd~~ 206 (287)
T PRK13637 162 EPKILILDEPTAGLDP--------KGR----DEILNKIKELHKEYNMTIILVSHSME 206 (287)
T ss_pred CCCEEEEECCccCCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7899999998876532 222 36777788888877999999999654
No 161
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.61 E-value=4.8e-08 Score=88.85 Aligned_cols=45 Identities=13% Similarity=0.235 Sum_probs=33.6
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-..
T Consensus 151 ~p~lllLDEPt~~LD~--------~~~----~~l~~~L~~~~~~~~~tviivsHd~~ 195 (257)
T PRK11247 151 RPGLLLLDEPLGALDA--------LTR----IEMQDLIESLWQQHGFTVLLVTHDVS 195 (257)
T ss_pred CCCEEEEeCCCCCCCH--------HHH----HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 7899999998876431 222 36777788887777999999999654
No 162
>PRK10908 cell division protein FtsE; Provisional
Probab=98.61 E-value=1.5e-06 Score=77.29 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=24.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+.+|+++.|.|++|+|||||+..++.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (222)
T PRK10908 24 HMRPGEMAFLTGHSGAGKSTLLKLICG 50 (222)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999997653
No 163
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.61 E-value=6.3e-08 Score=92.10 Aligned_cols=44 Identities=18% Similarity=0.435 Sum_probs=33.2
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
+++++++|+.++-+.. ..| ..+...|++++++.+.++|+++|-.
T Consensus 146 ~p~llLLDEPts~LD~--------~~~----~~l~~~L~~l~~~~g~tii~vTHd~ 189 (352)
T PRK11144 146 APELLLMDEPLASLDL--------PRK----RELLPYLERLAREINIPILYVSHSL 189 (352)
T ss_pred CCCEEEEcCCcccCCH--------HHH----HHHHHHHHHHHHhcCCeEEEEecCH
Confidence 7899999998766421 222 2677778888888899999999954
No 164
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.61 E-value=7.1e-08 Score=85.15 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 578999999999999999999996654
No 165
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.61 E-value=4.9e-07 Score=72.96 Aligned_cols=124 Identities=24% Similarity=0.156 Sum_probs=67.1
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEH 205 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 205 (352)
+..+.|+||||+|||+++..++..... ....++|++.+................... .......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 65 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP------PGGGVIYIDGEDILEEVLDQLLLIIVGGKK----------ASGSGEL 65 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC------CCCCEEEECCEEccccCHHHHHhhhhhccC----------CCCCHHH
Confidence 678999999999999999998876554 224699999887644332221100000000 0111111
Q ss_pred HHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccc
Q 047388 206 QYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQV 275 (352)
Q Consensus 206 ~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~ 275 (352)
....+...+....+.+++||++..+...... ...........+.......+..+|++++.
T Consensus 66 ---~~~~~~~~~~~~~~~viiiDei~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 66 ---RLRLALALARKLKPDVLILDEITSLLDAEQE-------ALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred ---HHHHHHHHHHhcCCCEEEEECCcccCCHHHH-------HHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 1122233333445799999999988542110 00000000123344445567888887774
No 166
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=8.1e-08 Score=91.96 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=32.2
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
+|+++++|+..+-+. ...| ..+...|+++.++.++++|+++|-.
T Consensus 167 ~P~lLLLDEP~s~LD--------~~~r----~~l~~~l~~l~~~~g~tii~vTHd~ 210 (377)
T PRK11607 167 RPKLLLLDEPMGALD--------KKLR----DRMQLEVVDILERVGVTCVMVTHDQ 210 (377)
T ss_pred CCCEEEEeCCcccCC--------HHHH----HHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 789999998776542 1222 2566677788888899999999943
No 167
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=8.3e-07 Score=80.58 Aligned_cols=59 Identities=12% Similarity=0.185 Sum_probs=42.2
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+|+++++|+.++-+.. ..+ ..+.+.|++++++.+++||+++|-.. .+...
T Consensus 171 ~p~llllDEPt~~LD~--------~~~----~~l~~~L~~~~~~~~~tii~~sH~~~------------------~~~~~ 220 (255)
T PRK11300 171 QPEILMLDEPAAGLNP--------KET----KELDELIAELRNEHNVTVLLIEHDMK------------------LVMGI 220 (255)
T ss_pred CCCEEEEcCCccCCCH--------HHH----HHHHHHHHHHHhhcCCEEEEEeCCHH------------------HHHHh
Confidence 7999999998876432 222 26777788887777899999999654 13456
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 221 ~d~i~~l~~ 229 (255)
T PRK11300 221 SDRIYVVNQ 229 (255)
T ss_pred CCEEEEEEC
Confidence 677777764
No 168
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.60 E-value=6.7e-07 Score=78.63 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 22 HVKKGEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 477999999999999999999997754
No 169
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=2.5e-07 Score=84.76 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=33.0
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-..
T Consensus 160 ~p~lllLDEPt~~LD~--------~~~----~~l~~~L~~~~~~~~~tiiivtH~~~ 204 (269)
T PRK13648 160 NPSVIILDEATSMLDP--------DAR----QNLLDLVRKVKSEHNITIISITHDLS 204 (269)
T ss_pred CCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEecCch
Confidence 7899999998876532 222 26677778887767899999998643
No 170
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.60 E-value=8.5e-08 Score=91.74 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=33.2
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
+++++++|+.++-+.. ..| ..+...|++++++.+.++|+++|-.
T Consensus 151 ~P~lLLLDEPts~LD~--------~~~----~~l~~~L~~l~~~~g~tvI~vTHd~ 194 (369)
T PRK11000 151 EPSVFLLDEPLSNLDA--------ALR----VQMRIEISRLHKRLGRTMIYVTHDQ 194 (369)
T ss_pred CCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHHhCCEEEEEeCCH
Confidence 7999999998776432 222 2677778888888899999999954
No 171
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.60 E-value=5.3e-07 Score=79.59 Aligned_cols=27 Identities=30% Similarity=0.250 Sum_probs=24.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999999996654
No 172
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.59 E-value=4.3e-07 Score=77.88 Aligned_cols=129 Identities=14% Similarity=0.152 Sum_probs=69.7
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcc-------cccc
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG-------AVLD 193 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~-------~~~~ 193 (352)
--+++|+++.|.|++|+|||||+..++... ++ ..+. ++++.... .. ......+..++-++ .+.+
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~----~~G~-i~~~g~~~-~~-~~~~~~~~i~~~~q~~~~~~~tv~~ 93 (178)
T cd03247 23 LELKQGEKIALLGRSGSGKSTLLQLLTGDL--KP----QQGE-ITLDGVPV-SD-LEKALSSLISVLNQRPYLFDTTLRN 93 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccC--CC----CCCE-EEECCEEH-HH-HHHHHHhhEEEEccCCeeecccHHH
Confidence 357899999999999999999999776543 22 2344 45555421 11 01112222333221 1112
Q ss_pred cEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEc
Q 047388 194 NIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTN 273 (352)
Q Consensus 194 ~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~ 273 (352)
|+ ....+..+ .+.+. +.+.+. .+++++++|+.++-+.. ..+ ..+.+.|++++ + +.+||+++
T Consensus 94 ~i--~~~LS~G~-~qrv~-laral~-~~p~~lllDEP~~~LD~--------~~~----~~l~~~l~~~~-~-~~tii~~s 154 (178)
T cd03247 94 NL--GRRFSGGE-RQRLA-LARILL-QDAPIVLLDEPTVGLDP--------ITE----RQLLSLIFEVL-K-DKTLIWIT 154 (178)
T ss_pred hh--cccCCHHH-HHHHH-HHHHHh-cCCCEEEEECCcccCCH--------HHH----HHHHHHHHHHc-C-CCEEEEEe
Confidence 21 11111111 11111 222222 47899999998876432 222 25666677664 3 78999998
Q ss_pred cccc
Q 047388 274 QVIA 277 (352)
Q Consensus 274 h~~~ 277 (352)
|-..
T Consensus 155 h~~~ 158 (178)
T cd03247 155 HHLT 158 (178)
T ss_pred cCHH
Confidence 8553
No 173
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.59 E-value=1.3e-06 Score=78.99 Aligned_cols=141 Identities=15% Similarity=0.179 Sum_probs=73.6
Q ss_pred cCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCC---CCCeEEEEeCCCCC-ChhhHHHHHHH----cCCCc---
Q 047388 120 GGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRG---GNGKVAYIDTEGTF-RPDRIVPIAER----FGMDP--- 188 (352)
Q Consensus 120 ~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg---~~~~vl~i~~e~~~-~~~rl~~~~~~----~~~~~--- 188 (352)
.|=+.+|+++.|.|++|+|||||+..++. ..++..|. .+..+.|+...... ....+.+.... .+...
T Consensus 19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G--~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 96 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAG--VLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFK 96 (246)
T ss_pred cCCcCCCCEEEEECCCCCCHHHHHHHHhC--CCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHH
Confidence 35688999999999999999999996653 33333332 11245555433211 11112221111 00000
Q ss_pred ccccccEEEE-------ecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHH
Q 047388 189 GAVLDNIIYA-------RAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKI 261 (352)
Q Consensus 189 ~~~~~~i~~~-------~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~l 261 (352)
.++++.+.+. ...+..+ .+.+. +...+ -.+++++++|+.++.+.. ..+ ..+...|+++
T Consensus 97 ~~~l~~l~l~~~~~~~~~~LSgGe-~qrv~-iaraL-~~~p~llllDEPt~~LD~--------~~~----~~l~~~l~~~ 161 (246)
T cd03237 97 TEIAKPLQIEQILDREVPELSGGE-LQRVA-IAACL-SKDADIYLLDEPSAYLDV--------EQR----LMASKVIRRF 161 (246)
T ss_pred HHHHHHcCCHHHhhCChhhCCHHH-HHHHH-HHHHH-hcCCCEEEEeCCcccCCH--------HHH----HHHHHHHHHH
Confidence 0111111000 0011111 11111 11122 137899999998877532 222 2677778888
Q ss_pred HHHhCcEEEEEccccc
Q 047388 262 SEEFNVAVYMTNQVIA 277 (352)
Q Consensus 262 a~~~~~~viv~~h~~~ 277 (352)
+++.+.+||+++|-..
T Consensus 162 ~~~~~~tiiivsHd~~ 177 (246)
T cd03237 162 AENNEKTAFVVEHDII 177 (246)
T ss_pred HHhcCCEEEEEeCCHH
Confidence 8878999999999654
No 174
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.59 E-value=2.7e-07 Score=83.75 Aligned_cols=135 Identities=18% Similarity=0.298 Sum_probs=79.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC--CCh--------hhHHHHHHHcCCCcc-c
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT--FRP--------DRIVPIAERFGMDPG-A 190 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~--~~~--------~rl~~~~~~~~~~~~-~ 190 (352)
-++.|+|.+|.|=||||||||.. +.|.+..++ .+-+++++++. .+. .++...+++|++-|. .
T Consensus 50 ~v~~GeIfViMGLSGSGKSTLvR--~~NrLiept-----~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 50 DVEEGEIFVIMGLSGSGKSTLVR--LLNRLIEPT-----RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eecCCeEEEEEecCCCCHHHHHH--HHhccCCCC-----CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 47889999999999999999999 556665543 23455565542 122 234445677777663 6
Q ss_pred ccccEEEEec---CCHHH-HHHHHHHH--------------------------HHHhhcCCceEEEEcccccchhcccCC
Q 047388 191 VLDNIIYARA---YTYEH-QYNLLLGL--------------------------AAKMSEEPFRLLIVDSVIALFRVDFTG 240 (352)
Q Consensus 191 ~~~~i~~~~~---~~~~~-~~~~l~~l--------------------------~~~l~~~~~~lvvIDsl~~l~~~~~~~ 240 (352)
+++|+.|.-. .+..+ .....+.+ .+.+ ..++++++.|+..+.+.+
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAl-a~~~~IlLMDEaFSALDP---- 197 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARAL-ANDPDILLMDEAFSALDP---- 197 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHH-ccCCCEEEecCchhhcCh----
Confidence 7777655321 11111 11111111 1111 126788888875444322
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 241 RGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 241 ~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
+- | .++-..|.+|-++++.|||+++|--
T Consensus 198 ---LI-R----~~mQdeLl~Lq~~l~KTIvFitHDL 225 (386)
T COG4175 198 ---LI-R----TEMQDELLELQAKLKKTIVFITHDL 225 (386)
T ss_pred ---HH-H----HHHHHHHHHHHHHhCCeEEEEecCH
Confidence 11 2 2555677888889999999999943
No 175
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.58 E-value=6.9e-07 Score=80.11 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=40.5
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+.+.|+++++ .+.+||+++|-.. .+...
T Consensus 161 ~p~llllDEPt~~LD~--------~~~----~~l~~~l~~~~~-~~~tii~vsH~~~------------------~~~~~ 209 (236)
T cd03219 161 DPKLLLLDEPAAGLNP--------EET----EELAELIRELRE-RGITVLLVEHDMD------------------VVMSL 209 (236)
T ss_pred CCCEEEEcCCcccCCH--------HHH----HHHHHHHHHHHH-CCCEEEEEecCHH------------------HHHHh
Confidence 7899999998876431 222 266777777776 5899999999553 13456
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 210 ~d~i~~l~~ 218 (236)
T cd03219 210 ADRVTVLDQ 218 (236)
T ss_pred CCEEEEEeC
Confidence 777777764
No 176
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=7.1e-07 Score=83.22 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
=+.+|+++.|.|++|+|||||+..++.
T Consensus 29 ~i~~Ge~v~iiG~nGsGKSTLl~~L~G 55 (305)
T PRK13651 29 EINQGEFIAIIGQTGSGKTTFIEHLNA 55 (305)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999999999996654
No 177
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.58 E-value=1.2e-07 Score=84.45 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=33.5
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-..
T Consensus 155 ~p~llllDEPt~~LD~--------~~~----~~l~~~l~~~~~~~~~tvii~sh~~~ 199 (225)
T PRK10247 155 MPKVLLLDEITSALDE--------SNK----HNVNEIIHRYVREQNIAVLWVTHDKD 199 (225)
T ss_pred CCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEECChH
Confidence 7899999998776432 222 36777788888878999999988653
No 178
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.58 E-value=1.9e-07 Score=89.97 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=24.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.||+|+|||||+..++.
T Consensus 25 ~i~~Geiv~liGpNGaGKSTLLk~LaG 51 (402)
T PRK09536 25 SVREGSLVGLVGPNGAGKTTLLRAING 51 (402)
T ss_pred EECCCCEEEEECCCCchHHHHHHHHhc
Confidence 578999999999999999999997654
No 179
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.58 E-value=7.7e-07 Score=78.79 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999999996654
No 180
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=7.1e-07 Score=81.58 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=33.5
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++-+.. ..+ ..+...|++++++.+.+||+++|-..
T Consensus 165 ~p~lllLDEPt~~LD~--------~~~----~~~~~~l~~l~~~~~~tiii~sH~~~ 209 (265)
T PRK10575 165 DSRCLLLDEPTSALDI--------AHQ----VDVLALVHRLSQERGLTVIAVLHDIN 209 (265)
T ss_pred CCCEEEEcCCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7999999998776431 222 36777788888777899999999643
No 181
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.57 E-value=1e-07 Score=90.81 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=33.1
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHh-CcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEF-NVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~-~~~viv~~h~~~ 277 (352)
+|+++++|+..+-+.. ..| .++...|+++.+++ ++++|+++|-..
T Consensus 155 ~P~llLLDEP~s~LD~--------~~r----~~l~~~l~~l~~~~~g~til~vTHd~~ 200 (362)
T TIGR03258 155 EPDVLLLDEPLSALDA--------NIR----ANMREEIAALHEELPELTILCVTHDQD 200 (362)
T ss_pred CCCEEEEcCccccCCH--------HHH----HHHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 7999999987765421 222 36777788888887 899999999543
No 182
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=2.7e-07 Score=78.63 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=68.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
=+++|+++.|.|++|+|||||+..++.. .++ ..+. ++++.+.. .......+.+..++-++. ..+.. .
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~--~~~----~~G~-i~~~g~~~-~~~~~~~~~~~i~~~~~~----~~~~~-~ 90 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRL--YDP----TSGE-ILIDGVDL-RDLDLESLRKNIAYVPQD----PFLFS-G 90 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcC--CCC----CCCE-EEECCEEh-hhcCHHHHHhhEEEEcCC----chhcc-c
Confidence 4789999999999999999999976543 222 2334 45555431 110111122233332211 01111 1
Q ss_pred CHHH------HHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccc
Q 047388 202 TYEH------QYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQV 275 (352)
Q Consensus 202 ~~~~------~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~ 275 (352)
+..+ +...+. +.+.+. .+++++++|+.++-+.. ..+ ..+.+.|+++.+ +.++|+++|-
T Consensus 91 t~~e~lLS~G~~~rl~-la~al~-~~p~llllDEP~~gLD~--------~~~----~~l~~~l~~~~~--~~tii~~sh~ 154 (171)
T cd03228 91 TIRENILSGGQRQRIA-IARALL-RDPPILILDEATSALDP--------ETE----ALILEALRALAK--GKTVIVIAHR 154 (171)
T ss_pred hHHHHhhCHHHHHHHH-HHHHHh-cCCCEEEEECCCcCCCH--------HHH----HHHHHHHHHhcC--CCEEEEEecC
Confidence 1111 111111 222222 37899999998876432 222 256666666643 5899999886
Q ss_pred cc
Q 047388 276 IA 277 (352)
Q Consensus 276 ~~ 277 (352)
..
T Consensus 155 ~~ 156 (171)
T cd03228 155 LS 156 (171)
T ss_pred HH
Confidence 54
No 183
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.57 E-value=8.1e-07 Score=75.54 Aligned_cols=91 Identities=24% Similarity=0.231 Sum_probs=53.3
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCHHHH
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQ 206 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 206 (352)
.++.|.|+||||||++|.+++.. .+.+++|++|...++.+...++.....--+ +++..+..+ .++
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~---------~~~~~~~iat~~~~~~e~~~ri~~h~~~R~----~~w~t~E~~--~~l 66 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ---------SGLQVLYIATAQPFDDEMAARIAHHRQRRP----AHWQTVEEP--LDL 66 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH---------cCCCcEeCcCCCCChHHHHHHHHHHHhcCC----CCCeEeccc--ccH
Confidence 47899999999999999998764 234689999987766542222222111112 222222221 111
Q ss_pred HHHHHHHHHHhhcCCceEEEEcccccchhcc
Q 047388 207 YNLLLGLAAKMSEEPFRLLIVDSVIALFRVD 237 (352)
Q Consensus 207 ~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~ 237 (352)
.+.+. ... .+.++|+||+++.+....
T Consensus 67 ~~~i~---~~~--~~~~~VlID~Lt~~~~n~ 92 (170)
T PRK05800 67 AELLR---ADA--APGRCVLVDCLTTWVTNL 92 (170)
T ss_pred HHHHH---hhc--CCCCEEEehhHHHHHHHH
Confidence 22111 111 246799999999997643
No 184
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.57 E-value=3e-07 Score=81.66 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=24.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|||||||+..++.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999999996643
No 185
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.57 E-value=7.4e-07 Score=83.09 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=32.9
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.+|+++++|+.++-+.. ..+ ..+.+.|+++++ .+.+||+++|-..
T Consensus 152 ~~p~lllLDEPt~gLD~--------~~~----~~l~~~l~~~~~-~g~til~~sH~~~ 196 (303)
T TIGR01288 152 NDPQLLILDEPTTGLDP--------HAR----HLIWERLRSLLA-RGKTILLTTHFME 196 (303)
T ss_pred cCCCEEEEeCCCcCCCH--------HHH----HHHHHHHHHHHh-CCCEEEEECCCHH
Confidence 37999999998877532 222 267777787765 4899999999654
No 186
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.57 E-value=1e-06 Score=76.96 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
=+.+|+++.|.|++|+|||||+..++.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 23 HLPAGGLLHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 367999999999999999999996654
No 187
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.56 E-value=6e-07 Score=80.19 Aligned_cols=59 Identities=10% Similarity=0.097 Sum_probs=41.3
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+.+.|.+++++.+.+||+++|-... +...
T Consensus 149 ~p~illlDEPt~~LD~--------~~~----~~l~~~l~~~~~~~~~tii~~sH~~~~------------------~~~~ 198 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQP--------SII----KDIGRVIRRLRAEGGMAILLVEQYLDF------------------AREL 198 (230)
T ss_pred CCCEEEecCCcccCCH--------HHH----HHHHHHHHHHHHcCCcEEEEEeCCHHH------------------HHHh
Confidence 7899999998776431 222 267777788777678999999986541 3445
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 199 ~d~v~~l~~ 207 (230)
T TIGR03410 199 ADRYYVMER 207 (230)
T ss_pred CCEEEEEEC
Confidence 677777754
No 188
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=1.8e-07 Score=83.71 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=33.6
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++-+.. ..+ ..+.+.|+.++++.+.+||+++|-..
T Consensus 147 ~p~lllLDEP~~gLD~--------~~~----~~~~~~l~~~~~~~~~tiii~sH~~~ 191 (232)
T PRK10771 147 EQPILLLDEPFSALDP--------ALR----QEMLTLVSQVCQERQLTLLMVSHSLE 191 (232)
T ss_pred CCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 7899999998776431 222 26777788887777899999998654
No 189
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.56 E-value=2e-07 Score=83.22 Aligned_cols=141 Identities=23% Similarity=0.297 Sum_probs=78.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCC--CCCeEEEEeCCCCCChh---hHHHHHHHcCCCc-ccccccE
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRG--GNGKVAYIDTEGTFRPD---RIVPIAERFGMDP-GAVLDNI 195 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg--~~~~vl~i~~e~~~~~~---rl~~~~~~~~~~~-~~~~~~i 195 (352)
.+|...+|.|+|+||+|||++...++. +..++.|. .++.+++-+..+-+-+. |+...++...+.| ..+..|+
T Consensus 20 ~~p~~GvTAlFG~SGsGKTslin~IaG--L~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL 97 (352)
T COG4148 20 TLPARGITALFGPSGSGKTSLINMIAG--LTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNL 97 (352)
T ss_pred cCCCCceEEEecCCCCChhhHHHHHhc--cCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecch
Confidence 344447999999999999999995543 33333332 24555443333322221 2222222222222 2455666
Q ss_pred EEEecCC-HHHHHH---HH------HHHH--------------HHhhcCCceEEEEcccccchhcccCCCcchHHHHHHH
Q 047388 196 IYARAYT-YEHQYN---LL------LGLA--------------AKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKL 251 (352)
Q Consensus 196 ~~~~~~~-~~~~~~---~l------~~l~--------------~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l 251 (352)
.|..-+. ..++.. ++ .+.. +.+ -..|+++..|+.-+-+ ++..+
T Consensus 98 ~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRAL-Lt~P~LLLmDEPLaSL--------D~~RK---- 164 (352)
T COG4148 98 RYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRAL-LTAPELLLMDEPLASL--------DLPRK---- 164 (352)
T ss_pred hhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHH-hcCCCeeeecCchhhc--------ccchh----
Confidence 6654332 222222 11 1111 111 1268999999754432 12222
Q ss_pred HHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 252 GQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 252 ~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.+++-.|.++.++.+++|+.++|...
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~ 190 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLD 190 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHH
Confidence 38888999999999999999999765
No 190
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.56 E-value=1.3e-07 Score=76.43 Aligned_cols=123 Identities=22% Similarity=0.275 Sum_probs=75.7
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChh-hHHHHHHHcCCCcccccccEEEEecCC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPD-RIVPIAERFGMDPGAVLDNIIYARAYT 202 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~-rl~~~~~~~~~~~~~~~~~i~~~~~~~ 202 (352)
+.+.++.|.|++|+|||+++.+++.......... ...+++|++......+. -...+++.++..... ..+
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~ 71 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIK-NHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---------RQT 71 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHC-CCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS---------TS-
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhcc-CCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc---------cCC
Confidence 3567899999999999999999988754200000 15678888765543333 344566667665421 122
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccc
Q 047388 203 YEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQV 275 (352)
Q Consensus 203 ~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~ 275 (352)
.. ++...+.+.+.+.+..+||||++..+. + ..++..|+.+..+.++.+|++.+.
T Consensus 72 ~~---~l~~~~~~~l~~~~~~~lviDe~~~l~----~------------~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 72 SD---ELRSLLIDALDRRRVVLLVIDEADHLF----S------------DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HH---HHHHHHHHHHHHCTEEEEEEETTHHHH----T------------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HH---HHHHHHHHHHHhcCCeEEEEeChHhcC----C------------HHHHHHHHHHHhCCCCeEEEEECh
Confidence 23 333445556666666899999998763 0 256677788888899999988664
No 191
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.55 E-value=7.2e-07 Score=81.73 Aligned_cols=44 Identities=9% Similarity=0.181 Sum_probs=32.9
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-.
T Consensus 161 ~p~lllLDEPt~~LD~--------~~~----~~l~~~l~~~~~~~g~tiiivsH~~ 204 (269)
T PRK11831 161 EPDLIMFDEPFVGQDP--------ITM----GVLVKLISELNSALGVTCVVVSHDV 204 (269)
T ss_pred CCCEEEEcCCCccCCH--------HHH----HHHHHHHHHHHHhcCcEEEEEecCH
Confidence 7899999998776432 222 3677778888777789999999954
No 192
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.55 E-value=1.3e-07 Score=89.94 Aligned_cols=45 Identities=20% Similarity=0.411 Sum_probs=33.9
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++-+.. ..+ ..+...|++++++.+.+||+++|-..
T Consensus 149 ~p~lllLDEPts~LD~--------~~~----~~l~~~L~~l~~~~g~tiiivtH~~~ 193 (354)
T TIGR02142 149 SPRLLLMDEPLAALDD--------PRK----YEILPYLERLHAEFGIPILYVSHSLQ 193 (354)
T ss_pred CCCEEEEcCCCcCCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 7899999998776432 222 26777888888888999999999543
No 193
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=3.2e-07 Score=84.13 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=24.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+.+|+++.|.|++|+|||||+..++.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 23 DFSLSPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 578999999999999999999996654
No 194
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=2.9e-07 Score=84.73 Aligned_cols=45 Identities=13% Similarity=0.349 Sum_probs=33.8
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++-+.. ..+ ..+...|++++++++.+||+++|-..
T Consensus 158 ~p~llllDEPt~~LD~--------~~~----~~l~~~l~~l~~~~g~tiil~sH~~~ 202 (277)
T PRK13642 158 RPEIIILDESTSMLDP--------TGR----QEIMRVIHEIKEKYQLTVLSITHDLD 202 (277)
T ss_pred CCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7899999998776432 222 36777888888878999999998654
No 195
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.55 E-value=1.1e-06 Score=80.27 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=33.6
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+|+++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-..
T Consensus 170 ~p~llllDEPt~~LD~--------~~~----~~l~~~l~~~~~~~g~tvii~tH~~~ 214 (262)
T PRK09984 170 QAKVILADEPIASLDP--------ESA----RIVMDTLRDINQNDGITVVVTLHQVD 214 (262)
T ss_pred CCCEEEecCccccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7899999998876432 222 36777788888777899999988654
No 196
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.55 E-value=3.8e-07 Score=85.95 Aligned_cols=45 Identities=18% Similarity=0.351 Sum_probs=34.2
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++|+|+.++.+.. ..+ .++++.|+++.++++.++|+++|-..
T Consensus 179 ~P~llilDEPts~LD~--------~~~----~~i~~lL~~l~~~~~~til~iTHdl~ 223 (331)
T PRK15079 179 EPKLIICDEPVSALDV--------SIQ----AQVVNLLQQLQREMGLSLIFIAHDLA 223 (331)
T ss_pred CCCEEEEeCCCccCCH--------HHH----HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 7899999998876532 222 37778888888888999999999543
No 197
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=3.6e-07 Score=83.80 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=25.2
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
--+.+|+++.|.|++|+|||||+..++..
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 30 FEINEGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999966543
No 198
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=2.8e-07 Score=84.67 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=24.7
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
--+.+|+++.|.|++|+|||||+..++.
T Consensus 23 l~i~~Ge~~~l~G~nGsGKSTLl~~i~G 50 (275)
T PRK13639 23 FKAEKGEMVALLGPNGAGKSTLFLHFNG 50 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999999996654
No 199
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.54 E-value=7.5e-07 Score=74.68 Aligned_cols=121 Identities=20% Similarity=0.217 Sum_probs=70.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
-+++|+++.|.|++|+|||||+..++.. .+ ...+.++++.+.... ....... ..+.+....
T Consensus 21 ~i~~g~~~~i~G~nGsGKStll~~l~g~--~~-----~~~G~i~~~~~~~~~-~~~~~~~-----------~~i~~~~ql 81 (157)
T cd00267 21 TLKAGEIVALVGPNGSGKSTLLRAIAGL--LK-----PTSGEILIDGKDIAK-LPLEELR-----------RRIGYVPQL 81 (157)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC--CC-----CCccEEEECCEEccc-CCHHHHH-----------hceEEEeeC
Confidence 4678999999999999999999976543 22 223445666653211 1111111 122222223
Q ss_pred CHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 202 ~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+..+.. .+. +...+. .+++++++|+++.-+.. ..+ ..+.+.|+.+.+. +.++|+++|-..
T Consensus 82 S~G~~~-r~~-l~~~l~-~~~~i~ilDEp~~~lD~--------~~~----~~l~~~l~~~~~~-~~tii~~sh~~~ 141 (157)
T cd00267 82 SGGQRQ-RVA-LARALL-LNPDLLLLDEPTSGLDP--------ASR----ERLLELLRELAEE-GRTVIIVTHDPE 141 (157)
T ss_pred CHHHHH-HHH-HHHHHh-cCCCEEEEeCCCcCCCH--------HHH----HHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 333222 122 222222 36899999998876431 222 2566667776654 789999999765
No 200
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.54 E-value=5.1e-07 Score=78.93 Aligned_cols=134 Identities=15% Similarity=0.082 Sum_probs=69.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHH-HHcCCCccc--------cc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIA-ERFGMDPGA--------VL 192 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~-~~~~~~~~~--------~~ 192 (352)
-+.+|+++.|.|++|+|||||+..++.....++ ..+. ++++.+...... ..... ...++-++. +.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p----~~G~-i~~~g~~~~~~~-~~~~~~~~i~~v~q~~~~~~~~~~~ 95 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV----TEGE-ILFKGEDITDLP-PEERARLGIFLAFQYPPEIPGVKNA 95 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC----CccE-EEECCEECCcCC-HHHHhhCcEEEeecChhhccCccHH
Confidence 467999999999999999999997765421121 2334 455554321100 01111 112222211 00
Q ss_pred ccEEEE-ecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEE
Q 047388 193 DNIIYA-RAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYM 271 (352)
Q Consensus 193 ~~i~~~-~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv 271 (352)
+++... ...+..+ ...+. +.+.+. .+++++++|+.+.-+.. ..+ ..+...|+++++ .+.+||+
T Consensus 96 ~~l~~~~~~LS~G~-~qrv~-laral~-~~p~illlDEPt~~LD~--------~~~----~~l~~~L~~~~~-~~~tiii 159 (200)
T cd03217 96 DFLRYVNEGFSGGE-KKRNE-ILQLLL-LEPDLAILDEPDSGLDI--------DAL----RLVAEVINKLRE-EGKSVLI 159 (200)
T ss_pred HHHhhccccCCHHH-HHHHH-HHHHHh-cCCCEEEEeCCCccCCH--------HHH----HHHHHHHHHHHH-CCCEEEE
Confidence 111000 1111111 11111 112221 37899999998876432 222 266777777765 4889999
Q ss_pred Eccccc
Q 047388 272 TNQVIA 277 (352)
Q Consensus 272 ~~h~~~ 277 (352)
++|-..
T Consensus 160 ~sh~~~ 165 (200)
T cd03217 160 ITHYQR 165 (200)
T ss_pred EecCHH
Confidence 988653
No 201
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=3.5e-07 Score=82.38 Aligned_cols=59 Identities=10% Similarity=0.141 Sum_probs=41.6
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+...|++++++.+.+||+++|-.. .+...
T Consensus 149 ~p~llllDEPt~~LD~--------~~~----~~l~~~l~~~~~~~g~tii~~sH~~~------------------~~~~~ 198 (241)
T PRK14250 149 NPEVLLLDEPTSALDP--------TST----EIIEELIVKLKNKMNLTVIWITHNME------------------QAKRI 198 (241)
T ss_pred CCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHhCCCEEEEEeccHH------------------HHHHh
Confidence 7899999998876432 122 26777788887767899999999654 13456
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 199 ~d~i~~l~~ 207 (241)
T PRK14250 199 GDYTAFLNK 207 (241)
T ss_pred CCEEEEEeC
Confidence 677777764
No 202
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=4.2e-07 Score=83.50 Aligned_cols=27 Identities=33% Similarity=0.335 Sum_probs=24.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
=+++|+++.|.|++|+|||||+..++.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (274)
T PRK13644 24 VIKKGEYIGIIGKNGSGKSTLALHLNG 50 (274)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999999997764
No 203
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.54 E-value=6.6e-07 Score=77.86 Aligned_cols=130 Identities=15% Similarity=0.200 Sum_probs=68.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcc--------cccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG--------AVLD 193 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~--------~~~~ 193 (352)
-+.+|+++.|.|++|+|||||+..++.....++ ..+. ++++.+.. ... ...+..++-++ .+.+
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~----~~G~-i~~~g~~~-~~~---~~~~~i~~~~q~~~~~~~~t~~~ 101 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG----VSGE-VLINGRPL-DKR---SFRKIIGYVPQDDILHPTLTVRE 101 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC----CceE-EEECCEeC-chH---hhhheEEEccCcccCCCCCcHHH
Confidence 478999999999999999999997754320021 2333 45555432 111 11222332221 1111
Q ss_pred cEEEEe---cCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEE
Q 047388 194 NIIYAR---AYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVY 270 (352)
Q Consensus 194 ~i~~~~---~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~vi 270 (352)
++.+.. ..+..+ ...+. +.+.+. .+++++++|+.++-+.. ..+ ..+.+.|+++.++ +.++|
T Consensus 102 ~i~~~~~~~~LS~G~-~qrv~-laral~-~~p~illlDEP~~~LD~--------~~~----~~l~~~l~~~~~~-~~tii 165 (194)
T cd03213 102 TLMFAAKLRGLSGGE-RKRVS-IALELV-SNPSLLFLDEPTSGLDS--------SSA----LQVMSLLRRLADT-GRTII 165 (194)
T ss_pred HHHHHHHhccCCHHH-HHHHH-HHHHHH-cCCCEEEEeCCCcCCCH--------HHH----HHHHHHHHHHHhC-CCEEE
Confidence 111000 011111 11111 112222 37899999998876431 222 2566667776554 89999
Q ss_pred EEcccc
Q 047388 271 MTNQVI 276 (352)
Q Consensus 271 v~~h~~ 276 (352)
+++|-.
T Consensus 166 i~sh~~ 171 (194)
T cd03213 166 CSIHQP 171 (194)
T ss_pred EEecCc
Confidence 998854
No 204
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.54 E-value=8.8e-07 Score=79.20 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=24.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+.+|+++.|.|++|+|||||+..++.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 22 SVKQGEIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 477999999999999999999997654
No 205
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1.1e-06 Score=80.23 Aligned_cols=45 Identities=9% Similarity=0.194 Sum_probs=33.1
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.+.-+.. ..+ ..+.+.|.+++++.+.+||+++|-..
T Consensus 161 ~p~llllDEPt~gLD~--------~~~----~~l~~~L~~l~~~~~~tiii~tH~~~ 205 (265)
T PRK10253 161 ETAIMLLDEPTTWLDI--------SHQ----IDLLELLSELNREKGYTLAAVLHDLN 205 (265)
T ss_pred CCCEEEEeCccccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7899999998776431 222 26777788887767899999988654
No 206
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.53 E-value=6.7e-07 Score=80.27 Aligned_cols=45 Identities=13% Similarity=0.272 Sum_probs=33.4
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-..
T Consensus 150 ~p~llllDEP~~~LD~--------~~~----~~l~~~l~~~~~~~~~tiii~sH~~~ 194 (236)
T TIGR03864 150 RPALLLLDEPTVGLDP--------ASR----AAIVAHVRALCRDQGLSVLWATHLVD 194 (236)
T ss_pred CCCEEEEcCCccCCCH--------HHH----HHHHHHHHHHHHhCCCEEEEEecChh
Confidence 7899999998776432 222 36777788887767899999999654
No 207
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.53 E-value=1.3e-07 Score=83.46 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=33.8
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++-+.. ..+ ..+...|+++.++.+.+||+++|-..
T Consensus 146 ~p~llllDEPt~~LD~--------~~~----~~~~~~l~~~~~~~~~tii~vsh~~~ 190 (213)
T TIGR01277 146 PNPILLLDEPFSALDP--------LLR----EEMLALVKQLCSERQRTLLMVTHHLS 190 (213)
T ss_pred CCCEEEEcCCCccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7899999998876532 122 36777788887777899999998654
No 208
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.53 E-value=2.2e-07 Score=81.60 Aligned_cols=60 Identities=10% Similarity=0.165 Sum_probs=44.5
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+|+++++|+..+-+.+ .+ ..++...++++.++.+++|+++-|-.+- +...
T Consensus 167 ~P~lLLLDEPaAGln~--------~e----~~~l~~~i~~i~~~~g~tillIEHdM~~------------------Vm~l 216 (250)
T COG0411 167 QPKLLLLDEPAAGLNP--------EE----TEELAELIRELRDRGGVTILLIEHDMKL------------------VMGL 216 (250)
T ss_pred CCCEEEecCccCCCCH--------HH----HHHHHHHHHHHHhcCCcEEEEEEeccHH------------------Hhhh
Confidence 7999999998876542 22 3478888888888889999999997652 3456
Q ss_pred cceEEEEEee
Q 047388 301 VTIRLMFRKG 310 (352)
Q Consensus 301 ~~~~i~L~~~ 310 (352)
||.++.|..+
T Consensus 217 ~dri~Vl~~G 226 (250)
T COG0411 217 ADRIVVLNYG 226 (250)
T ss_pred ccEEEeccCC
Confidence 6666666654
No 209
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.53 E-value=1.1e-06 Score=73.63 Aligned_cols=149 Identities=17% Similarity=0.291 Sum_probs=84.8
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC------------CCChhhHHHHHHHcCCCc--
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG------------TFRPDRIVPIAERFGMDP-- 188 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~------------~~~~~rl~~~~~~~~~~~-- 188 (352)
-..|+++.|.|.||||||||+. |.|.+..+..| .+.+..|. ..+...+..+..++++-+
T Consensus 29 A~~GdVisIIGsSGSGKSTfLR--CiN~LE~P~~G-----~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~ 101 (256)
T COG4598 29 ANAGDVISIIGSSGSGKSTFLR--CINFLEKPSAG-----SIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQH 101 (256)
T ss_pred cCCCCEEEEecCCCCchhHHHH--HHHhhcCCCCc-----eEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhh
Confidence 3579999999999999999999 66777654433 33333331 233444444444444322
Q ss_pred ------ccccccEEEEec-----CCH---HHHHHHHHH-----------------------HHHHhhcCCceEEEEcccc
Q 047388 189 ------GAVLDNIIYARA-----YTY---EHQYNLLLG-----------------------LAAKMSEEPFRLLIVDSVI 231 (352)
Q Consensus 189 ------~~~~~~i~~~~~-----~~~---~~~~~~l~~-----------------------l~~~l~~~~~~lvvIDsl~ 231 (352)
..+++|+.-.+. ... +....++.+ +.+.+ ...|+++.+|..+
T Consensus 102 FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaL-ameP~vmLFDEPT 180 (256)
T COG4598 102 FNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARAL-AMEPEVMLFDEPT 180 (256)
T ss_pred cchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHH-hcCCceEeecCCc
Confidence 233444321111 000 001111111 11111 1268899999988
Q ss_pred cchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEee
Q 047388 232 ALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKG 310 (352)
Q Consensus 232 ~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~ 310 (352)
+.+.+++ +.+++..+..||++ |-|.++++|-.. | -.+.++.+++|.++
T Consensus 181 SALDPEl------------VgEVLkv~~~LAeE-grTMv~VTHEM~------F------------AR~Vss~v~fLh~G 228 (256)
T COG4598 181 SALDPEL------------VGEVLKVMQDLAEE-GRTMVVVTHEMG------F------------ARDVSSHVIFLHQG 228 (256)
T ss_pred ccCCHHH------------HHHHHHHHHHHHHh-CCeEEEEeeehh------H------------HHhhhhheEEeecc
Confidence 8765533 45888889999987 667777777543 1 24456667777764
No 210
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.52 E-value=1.8e-06 Score=78.29 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=33.5
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++-+.. ..+ ..+...|++++++.+.+||+++|-..
T Consensus 166 ~p~vlllDEP~~~LD~--------~~~----~~l~~~l~~~~~~~~~tii~vsH~~~ 210 (253)
T TIGR02323 166 RPRLVFMDEPTGGLDV--------SVQ----ARLLDLLRGLVRDLGLAVIIVTHDLG 210 (253)
T ss_pred CCCEEEEcCCCccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7899999998776432 222 26777778887777999999999653
No 211
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=1.1e-06 Score=77.24 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=24.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+.+|+++.|.|++|||||||+..++.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILG 48 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 367999999999999999999997664
No 212
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.51 E-value=1.7e-06 Score=79.08 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=82.2
Q ss_pred EEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHH-HHHHHcCCCcccccccEEEEecCCHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIV-PIAERFGMDPGAVLDNIIYARAYTYEHQ 206 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 206 (352)
..+|+|+++.|||+++..++..-....+.++..-+|+++..-...+..++. .++..++.... ...+..
T Consensus 63 ~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~---------~~~~~~-- 131 (302)
T PF05621_consen 63 NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR---------PRDRVA-- 131 (302)
T ss_pred ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC---------CCCCHH--
Confidence 489999999999999999987543222222234579999876554444443 45566665431 111122
Q ss_pred HHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEc
Q 047388 207 YNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTN 273 (352)
Q Consensus 207 ~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~ 273 (352)
..-.++...+...+++++|||++..+... ... + ..++++.||.|+.++++++|.+.
T Consensus 132 -~~~~~~~~llr~~~vrmLIIDE~H~lLaG------s~~-~---qr~~Ln~LK~L~NeL~ipiV~vG 187 (302)
T PF05621_consen 132 -KLEQQVLRLLRRLGVRMLIIDEFHNLLAG------SYR-K---QREFLNALKFLGNELQIPIVGVG 187 (302)
T ss_pred -HHHHHHHHHHHHcCCcEEEeechHHHhcc------cHH-H---HHHHHHHHHHHhhccCCCeEEec
Confidence 22233345666779999999999887542 111 1 24899999999999999999874
No 213
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=1.1e-06 Score=84.59 Aligned_cols=45 Identities=13% Similarity=0.233 Sum_probs=33.3
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++-+.. ..| ..+.+.|++++++.+.+||+++|-..
T Consensus 182 ~P~iLLLDEPts~LD~--------~~r----~~l~~~L~~l~~~~g~TIIivTHd~~ 226 (400)
T PRK10070 182 NPDILLMDEAFSALDP--------LIR----TEMQDELVKLQAKHQRTIVFISHDLD 226 (400)
T ss_pred CCCEEEEECCCccCCH--------HHH----HHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 7899999998776432 222 26777788887778999999999543
No 214
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.51 E-value=1.1e-06 Score=79.14 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=24.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.+|+++.|.|++|+|||||+..++..
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 23 NIDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999977653
No 215
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.51 E-value=3e-06 Score=76.92 Aligned_cols=46 Identities=13% Similarity=0.215 Sum_probs=34.1
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.+++++++|+.++-+.. ..+ ..+...|++++++.+.+||+++|-..
T Consensus 157 ~~p~lLlLDEPt~~LD~--------~~~----~~l~~~L~~~~~~~g~til~~sH~~~ 202 (254)
T PRK10418 157 CEAPFIIADEPTTDLDV--------VAQ----ARILDLLESIVQKRALGMLLVTHDMG 202 (254)
T ss_pred cCCCEEEEeCCCcccCH--------HHH----HHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 37899999998876431 222 26777788888777999999999654
No 216
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.51 E-value=1.1e-07 Score=83.50 Aligned_cols=27 Identities=33% Similarity=0.398 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999999996654
No 217
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.51 E-value=8.1e-07 Score=81.46 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=41.9
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhh
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAH 299 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~ 299 (352)
.+++++++|+.++-+.. ..+ ..+...|.+++++++.+||+++|-.. .+..
T Consensus 171 ~~p~lllLDEPt~~LD~--------~~~----~~l~~~l~~~~~~~~~tviiisH~~~------------------~~~~ 220 (272)
T PRK13547 171 QPPRYLLLDEPTAALDL--------AHQ----HRLLDTVRRLARDWNLGVLAIVHDPN------------------LAAR 220 (272)
T ss_pred CCCCEEEEcCccccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEECCHH------------------HHHH
Confidence 37999999998776432 222 26777788887777899999998543 1345
Q ss_pred ccceEEEEEe
Q 047388 300 AVTIRLMFRK 309 (352)
Q Consensus 300 ~~~~~i~L~~ 309 (352)
.+|..+.|..
T Consensus 221 ~~d~i~~l~~ 230 (272)
T PRK13547 221 HADRIAMLAD 230 (272)
T ss_pred hCCEEEEEEC
Confidence 6677777764
No 218
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.51 E-value=3.7e-07 Score=80.19 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=24.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|+|||||+..++..
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999999977543
No 219
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.50 E-value=2.3e-06 Score=76.11 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.5
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
+.+|+++.|.|++|+|||||+..++.
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G 28 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILG 28 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 67899999999999999999997654
No 220
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.50 E-value=1.1e-06 Score=79.72 Aligned_cols=59 Identities=12% Similarity=0.239 Sum_probs=41.7
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+...|++++++.+.++|+++|-... +...
T Consensus 164 ~p~llllDEP~~~LD~--------~~~----~~l~~~l~~~~~~~~~tiiivsH~~~~------------------~~~~ 213 (252)
T TIGR03005 164 RPKVMLFDEVTSALDP--------ELV----GEVLNVIRRLASEHDLTMLLVTHEMGF------------------AREF 213 (252)
T ss_pred CCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHhcCcEEEEEeCCHHH------------------HHHh
Confidence 7899999998776431 222 367777888887779999999996531 3455
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 214 ~d~i~~l~~ 222 (252)
T TIGR03005 214 ADRVCFFDK 222 (252)
T ss_pred cCEEEEEEC
Confidence 677777764
No 221
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=5e-07 Score=83.62 Aligned_cols=45 Identities=9% Similarity=0.216 Sum_probs=33.7
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++.+.. ..+ ..+.+.|++++++.+.+||+++|-..
T Consensus 168 ~p~lLlLDEPt~~LD~--------~~~----~~l~~~l~~~~~~~~~tiiiisH~~~ 212 (289)
T PRK13645 168 DGNTLVLDEPTGGLDP--------KGE----EDFINLFERLNKEYKKRIIMVTHNMD 212 (289)
T ss_pred CCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 7899999998877532 222 26777788887777999999999654
No 222
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=7.8e-07 Score=79.86 Aligned_cols=28 Identities=39% Similarity=0.494 Sum_probs=24.5
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
--+.+|+++.|+|++|+|||||+..++.
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 26 LHINQGEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 3578999999999999999999996653
No 223
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=1.3e-06 Score=78.64 Aligned_cols=59 Identities=12% Similarity=0.200 Sum_probs=41.3
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-.. .+...
T Consensus 153 ~p~llllDEPt~~LD~--------~~~----~~l~~~L~~~~~~~g~tvii~sH~~~------------------~~~~~ 202 (242)
T cd03295 153 DPPLLLMDEPFGALDP--------ITR----DQLQEEFKRLQQELGKTIVFVTHDID------------------EAFRL 202 (242)
T ss_pred CCCEEEecCCcccCCH--------HHH----HHHHHHHHHHHHHcCCEEEEEecCHH------------------HHHHh
Confidence 7899999998776431 222 36777788887767899999988653 13456
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 203 ~d~i~~l~~ 211 (242)
T cd03295 203 ADRIAIMKN 211 (242)
T ss_pred CCEEEEEEC
Confidence 677777764
No 224
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.50 E-value=1.7e-06 Score=76.81 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=33.4
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
+++++++|+.+..+.. ..+ ..+...|++++++.+.+||+++|-.
T Consensus 159 ~p~illlDEP~~~LD~--------~~~----~~l~~~l~~~~~~~~~tii~~sh~~ 202 (220)
T TIGR02982 159 RPKLVLADEPTAALDS--------KSG----RDVVELMQKLAREQGCTILIVTHDN 202 (220)
T ss_pred CCCEEEEeCCCCcCCH--------HHH----HHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 7899999998876432 222 3677778888777799999999864
No 225
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=5.1e-07 Score=83.57 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=24.9
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-=+++|+++.|.|++|+|||||+..++.
T Consensus 27 l~i~~Ge~v~i~G~nGsGKSTLl~~l~G 54 (288)
T PRK13643 27 LEVKKGSYTALIGHTGSGKSTLLQHLNG 54 (288)
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence 3578999999999999999999997654
No 226
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=7.6e-07 Score=83.54 Aligned_cols=28 Identities=25% Similarity=0.188 Sum_probs=24.8
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
--+++|+++.|.|++|||||||+..++.
T Consensus 47 l~i~~Ge~~~I~G~nGsGKSTLl~~L~G 74 (320)
T PRK13631 47 YTFEKNKIYFIIGNSGSGKSTLVTHFNG 74 (320)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3678999999999999999999996653
No 227
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.49 E-value=6.8e-07 Score=84.22 Aligned_cols=44 Identities=27% Similarity=0.437 Sum_probs=33.8
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
+++++|.|+.++.+.. ..+ ..++..|+++.++++.++|+++|-.
T Consensus 179 ~P~llilDEPts~LD~--------~~~----~~i~~lL~~l~~~~g~til~iTHdl 222 (330)
T PRK09473 179 RPKLLIADEPTTALDV--------TVQ----AQIMTLLNELKREFNTAIIMITHDL 222 (330)
T ss_pred CCCEEEEeCCCccCCH--------HHH----HHHHHHHHHHHHHcCCEEEEEECCH
Confidence 7899999998876531 222 3778888888888899999999953
No 228
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=1.1e-06 Score=79.20 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=24.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|+|||||+..++..
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 25 TVNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999999976643
No 229
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.49 E-value=1.6e-07 Score=84.38 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=41.3
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.+.-+.. ..+ ..+.+.|++++++.+.+||+++|-... +..+
T Consensus 148 ~p~llllDEP~~~LD~--------~~~----~~~~~~l~~~~~~~~~tvli~sH~~~~------------------~~~~ 197 (237)
T TIGR00968 148 EPQVLLLDEPFGALDA--------KVR----KELRSWLRKLHDEVHVTTVFVTHDQEE------------------AMEV 197 (237)
T ss_pred CCCEEEEcCCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHhh
Confidence 7899999998776432 222 367777888877668999999996541 3456
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 198 ~d~i~~l~~ 206 (237)
T TIGR00968 198 ADRIVVMSN 206 (237)
T ss_pred cCEEEEEEC
Confidence 676777753
No 230
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.48 E-value=2.3e-07 Score=81.37 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|+|||||+..++..
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 5789999999999999999999976543
No 231
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.48 E-value=1.2e-06 Score=83.84 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=34.0
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.+|+++++|+.++-+.+ ..| .++.+.|.++.++.+.|||+++|-..
T Consensus 181 ~~P~ILLlDEPts~LD~--------~~r----~~l~~~L~~l~~~~~~TII~iTHdl~ 226 (382)
T TIGR03415 181 MDADILLMDEPFSALDP--------LIR----TQLQDELLELQAKLNKTIIFVSHDLD 226 (382)
T ss_pred cCCCEEEEECCCccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 37899999988776432 222 26777788888888999999999543
No 232
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.48 E-value=1.8e-06 Score=80.35 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=24.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.||+|+|||||+..++.
T Consensus 24 ~i~~Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 24 EAQKGRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999999996653
No 233
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.48 E-value=8.3e-07 Score=78.11 Aligned_cols=154 Identities=18% Similarity=0.246 Sum_probs=80.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCC--CCCeEEE-EeCCCCCChh-----hHHHHHHHcCCCcccccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRG--GNGKVAY-IDTEGTFRPD-----RIVPIAERFGMDPGAVLD 193 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg--~~~~vl~-i~~e~~~~~~-----rl~~~~~~~~~~~~~~~~ 193 (352)
-+++|+.+.|.|++|+|||||+.-++ ...+|+.|. ..+++.+ ++....|.++ -+.....-+|+..+++-+
T Consensus 49 ~i~~Ge~vGiiG~NGaGKSTLlklia--Gi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~ 126 (249)
T COG1134 49 EIYKGERVGIIGHNGAGKSTLLKLIA--GIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDE 126 (249)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHh--CccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHH
Confidence 47899999999999999999998443 344444332 1333332 2322333332 111122222332211100
Q ss_pred cEEEEecCCHHHHHHHHH------------HHH-HHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHH
Q 047388 194 NIIYARAYTYEHQYNLLL------------GLA-AKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTK 260 (352)
Q Consensus 194 ~i~~~~~~~~~~~~~~l~------------~l~-~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~ 260 (352)
.+. ......++-+.++ ++. ......+|+++++|+.-+.-.. . ...+....|.+
T Consensus 127 ~~~--eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~------~------F~~K~~~rl~e 192 (249)
T COG1134 127 KVD--EIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA------A------FQEKCLERLNE 192 (249)
T ss_pred HHH--HHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCH------H------HHHHHHHHHHH
Confidence 000 0000000000000 110 0111238999999998776221 1 12366677777
Q ss_pred HHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEee
Q 047388 261 ISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKG 310 (352)
Q Consensus 261 la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~ 310 (352)
+.++ +.++|+++|-.. .+..+||..++|+++
T Consensus 193 ~~~~-~~tiv~VSHd~~------------------~I~~~Cd~~i~l~~G 223 (249)
T COG1134 193 LVEK-NKTIVLVSHDLG------------------AIKQYCDRAIWLEHG 223 (249)
T ss_pred HHHc-CCEEEEEECCHH------------------HHHHhcCeeEEEeCC
Confidence 7655 588999988553 368899999999874
No 234
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.48 E-value=7.9e-07 Score=81.36 Aligned_cols=45 Identities=16% Similarity=0.322 Sum_probs=33.8
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++-+.. ..+ ..+.+.|.+++++++.+||+++|-..
T Consensus 167 ~p~lllLDEPt~~LD~--------~~~----~~l~~~l~~~~~~~g~tviivsH~~~ 211 (267)
T PRK15112 167 RPKVIIADEALASLDM--------SMR----SQLINLMLELQEKQGISYIYVTQHLG 211 (267)
T ss_pred CCCEEEEcCCcccCCH--------HHH----HHHHHHHHHHHHHcCcEEEEEeCCHH
Confidence 7899999998876532 222 26777788888777999999998653
No 235
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.48 E-value=1.9e-06 Score=75.44 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=23.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
=+++|+++.|.|++|+|||||+..++.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (201)
T cd03231 22 TLAAGEALQVTGPNGSGKTTLLRILAG 48 (201)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999999999996654
No 236
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=1.4e-07 Score=84.73 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=41.8
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+...|+.++.+++.++|+++|-.. .+...
T Consensus 147 ~p~llllDEPt~gLD~--------~~~----~~l~~~l~~~~~~~~~tili~tH~~~------------------~~~~~ 196 (235)
T cd03299 147 NPKILLLDEPFSALDV--------RTK----EKLREELKKIRKEFGVTVLHVTHDFE------------------EAWAL 196 (235)
T ss_pred CCCEEEECCCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEecCHH------------------HHHHh
Confidence 7899999998876432 222 26777788887777999999998543 13556
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.+..
T Consensus 197 ~d~i~~l~~ 205 (235)
T cd03299 197 ADKVAIMLN 205 (235)
T ss_pred CCEEEEEEC
Confidence 677777764
No 237
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.47 E-value=5.8e-07 Score=92.13 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=77.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcc-------ccccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG-------AVLDN 194 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~-------~~~~~ 194 (352)
-+++|+.+.|+|+||||||||+.-+.. ...| ..+-+++|.-+ ...-......+..|+-++ ++.+|
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~g-ly~p------~~G~I~~dg~d-l~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eN 566 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLG-LYKP------QQGRILLDGVD-LNDIDLASLRRQVGYVLQDPFLFSGSIREN 566 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhc-CCCC------CCceEEECCEe-HHhcCHHHHHhheeEEcccchhhcCcHHHH
Confidence 689999999999999999999995543 2222 23345555432 112223334444554332 34456
Q ss_pred EEEEecCCH-HHHHHHHH---------HH-------------------------HHHhhcCCceEEEEcccccchhcccC
Q 047388 195 IIYARAYTY-EHQYNLLL---------GL-------------------------AAKMSEEPFRLLIVDSVIALFRVDFT 239 (352)
Q Consensus 195 i~~~~~~~~-~~~~~~l~---------~l-------------------------~~~l~~~~~~lvvIDsl~~l~~~~~~ 239 (352)
+....+... ++..+... ++ .+.+ -.+|+++++|+.++.+..
T Consensus 567 i~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaL-l~~P~ILlLDEaTSaLD~--- 642 (709)
T COG2274 567 IALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARAL-LSKPKILLLDEATSALDP--- 642 (709)
T ss_pred HhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHh-ccCCCEEEEeCcccccCH---
Confidence 555544332 33222111 00 0111 248999999998887532
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 240 GRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 240 ~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
..++ .+.+.|.++.. |+|+|+++|-..
T Consensus 643 ----~sE~-----~I~~~L~~~~~--~~T~I~IaHRl~ 669 (709)
T COG2274 643 ----ETEA-----IILQNLLQILQ--GRTVIIIAHRLS 669 (709)
T ss_pred ----hHHH-----HHHHHHHHHhc--CCeEEEEEccch
Confidence 2333 67777877754 688888888543
No 238
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=8.6e-07 Score=82.00 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=24.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 29 ~i~~Ge~~~iiG~NGaGKSTLl~~l~G 55 (287)
T PRK13641 29 ELEEGSFVALVGHTGSGKSTLMQHFNA 55 (287)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999999997754
No 239
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.47 E-value=6.9e-07 Score=79.25 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=24.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|+|||||+..++..
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 26 SIKPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999999977643
No 240
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.46 E-value=1.8e-06 Score=75.66 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=24.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G 49 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAG 49 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999999996654
No 241
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=1.6e-06 Score=75.92 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|+|||||+..++..
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHhccc
Confidence 4789999999999999999999966543
No 242
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.46 E-value=5e-06 Score=73.93 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
=+.+|+++.|.|++|+|||||+..++.
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G 56 (224)
T TIGR02324 30 TVNAGECVALSGPSGAGKSTLLKSLYA 56 (224)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 467999999999999999999996654
No 243
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.46 E-value=2e-06 Score=75.63 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAG 50 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 577999999999999999999996654
No 244
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.46 E-value=1.6e-06 Score=86.60 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=24.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+.+|+++.|.||+|||||||+..++.
T Consensus 26 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G 52 (501)
T PRK10762 26 NVYPGRVMALVGENGAGKSTMMKVLTG 52 (501)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 577999999999999999999996654
No 245
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.45 E-value=1.6e-06 Score=76.60 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=33.8
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+|+++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-..
T Consensus 149 ~p~llllDEPt~~LD~--------~~~----~~l~~~l~~~~~~~~~tiii~sH~~~ 193 (214)
T cd03297 149 QPELLLLDEPFSALDR--------ALR----LQLLPELKQIKKNLNIPVIFVTHDLS 193 (214)
T ss_pred CCCEEEEcCCcccCCH--------HHH----HHHHHHHHHHHHHcCcEEEEEecCHH
Confidence 7899999998876431 222 36777888888877899999998654
No 246
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.45 E-value=6.1e-06 Score=73.75 Aligned_cols=59 Identities=14% Similarity=0.222 Sum_probs=41.9
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-... +...
T Consensus 143 ~p~vllLDEPt~~LD~--------~~~----~~l~~~l~~~~~~~~~tiii~sH~~~~------------------~~~~ 192 (230)
T TIGR02770 143 EPPFLIADEPTTDLDV--------VNQ----ARVLKLLRELRQLFGTGILLITHDLGV------------------VARI 192 (230)
T ss_pred CCCEEEEcCCccccCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHh
Confidence 7899999998876431 222 267777888877778999999996541 3456
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 193 ~d~i~~l~~ 201 (230)
T TIGR02770 193 ADEVAVMDD 201 (230)
T ss_pred CCEEEEEEC
Confidence 677777764
No 247
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.45 E-value=2.5e-06 Score=77.52 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=24.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G 53 (257)
T PRK10619 27 QANAGDVISIIGSSGSGKSTFLRCINF 53 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999999996654
No 248
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.45 E-value=2.6e-06 Score=77.39 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=24.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+.+|+++.|.|++|+|||||+..++.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G 49 (256)
T TIGR03873 23 TAPPGSLTGLLGPNGSGKSTLLRLLAG 49 (256)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 467999999999999999999997654
No 249
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.45 E-value=2.6e-06 Score=75.50 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 24 NVYKGEIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999996654
No 250
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.45 E-value=1.3e-06 Score=78.52 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=42.0
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-.. .+...
T Consensus 171 ~p~llllDEPt~~LD~--------~~~----~~l~~~l~~~~~~~~~tiiivsH~~~------------------~~~~~ 220 (236)
T cd03267 171 EPEILFLDEPTIGLDV--------VAQ----ENIRNFLKEYNRERGTTVLLTSHYMK------------------DIEAL 220 (236)
T ss_pred CCCEEEEcCCCCCCCH--------HHH----HHHHHHHHHHHhcCCCEEEEEecCHH------------------HHHHh
Confidence 7899999998876532 222 36777788887777899999999654 13556
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|..+.|..
T Consensus 221 ~d~i~~l~~ 229 (236)
T cd03267 221 ARRVLVIDK 229 (236)
T ss_pred CCEEEEEeC
Confidence 677777753
No 251
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.44 E-value=3.9e-07 Score=81.55 Aligned_cols=59 Identities=12% Similarity=0.204 Sum_probs=41.4
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.+.-+.. ..+ ..+.+.|+.++++.+.+||+++|-... +..+
T Consensus 148 ~p~llllDEP~~gLD~--------~~~----~~l~~~l~~~~~~~~~tiii~sh~~~~------------------~~~~ 197 (232)
T cd03300 148 EPKVLLLDEPLGALDL--------KLR----KDMQLELKRLQKELGITFVFVTHDQEE------------------ALTM 197 (232)
T ss_pred CCCEEEEcCCcccCCH--------HHH----HHHHHHHHHHHHHcCCEEEEEeCCHHH------------------HHHh
Confidence 7899999998776431 222 267777788877779999999986541 3456
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 198 ~d~i~~l~~ 206 (232)
T cd03300 198 SDRIAVMNK 206 (232)
T ss_pred cCEEEEEEC
Confidence 677777764
No 252
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.44 E-value=9.9e-07 Score=77.47 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=30.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDT 168 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~ 168 (352)
-+++|++..+.|++|+||||....++ ....| ..+.+-|...
T Consensus 24 ~v~~G~i~GllG~NGAGKTTtfRmIL-glle~-----~~G~I~~~g~ 64 (300)
T COG4152 24 EVPPGEIFGLLGPNGAGKTTTFRMIL-GLLEP-----TEGEITWNGG 64 (300)
T ss_pred eecCCeEEEeecCCCCCccchHHHHh-ccCCc-----cCceEEEcCc
Confidence 57999999999999999999998554 44443 3445555443
No 253
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.44 E-value=2.4e-06 Score=85.50 Aligned_cols=58 Identities=9% Similarity=0.150 Sum_probs=40.9
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++.+.. ..+ ..+.+.|+.+++ .+.+||+++|-.. .+...
T Consensus 427 ~p~lLlLDEPt~~LD~--------~~~----~~l~~~l~~l~~-~g~tvi~vsHd~~------------------~~~~~ 475 (510)
T PRK09700 427 CPEVIIFDEPTRGIDV--------GAK----AEIYKVMRQLAD-DGKVILMVSSELP------------------EIITV 475 (510)
T ss_pred CCCEEEECCCCCCcCH--------HHH----HHHHHHHHHHHH-CCCEEEEEcCCHH------------------HHHhh
Confidence 7899999998876532 222 367777777775 4899999999643 13556
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 476 ~d~i~~l~~ 484 (510)
T PRK09700 476 CDRIAVFCE 484 (510)
T ss_pred CCEEEEEEC
Confidence 787777764
No 254
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.44 E-value=2.8e-06 Score=76.82 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=24.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 18 ~i~~Gei~~l~G~nGsGKSTLl~~l~G 44 (248)
T PRK03695 18 EVRAGEILHLVGPNGAGKSTLLARMAG 44 (248)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 377999999999999999999996654
No 255
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.44 E-value=7.3e-07 Score=89.59 Aligned_cols=128 Identities=18% Similarity=0.161 Sum_probs=71.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCc-------cccccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDP-------GAVLDN 194 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~-------~~~~~~ 194 (352)
=+++|+.+.|+|++|||||||+.-++.. .++ ..+.++++..+- ... .....+.+++-+ .++.+|
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~--~~p-----~~G~I~i~g~~i-~~~-~~~lr~~i~~V~Q~~~lF~~TI~eN 427 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGL--LDP-----LQGEVTLDGVSV-SSL-QDELRRRISVFAQDAHLFDTTVRDN 427 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC--CCC-----CCcEEEECCEEh-hhH-HHHHHhheEEEccCcccccccHHHH
Confidence 4789999999999999999999866533 221 233455655331 122 223333333322 245566
Q ss_pred EEEEec-CCHHHHHHHHHH-----------------------------------HHHHhhcCCceEEEEcccccchhccc
Q 047388 195 IIYARA-YTYEHQYNLLLG-----------------------------------LAAKMSEEPFRLLIVDSVIALFRVDF 238 (352)
Q Consensus 195 i~~~~~-~~~~~~~~~l~~-----------------------------------l~~~l~~~~~~lvvIDsl~~l~~~~~ 238 (352)
+.+... .+.++..+.++. .+..+ .+++++++|+.++....+
T Consensus 428 I~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall--~~~~iliLDE~TSaLD~~- 504 (529)
T TIGR02868 428 LRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALL--ADAPILLLDEPTEHLDAG- 504 (529)
T ss_pred HhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHh--cCCCEEEEeCCcccCCHH-
Confidence 655432 222222222111 11111 378999999988875321
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcc
Q 047388 239 TGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQ 274 (352)
Q Consensus 239 ~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h 274 (352)
.+ ..+.+.|.++. .+.|+|+++|
T Consensus 505 ------te-----~~I~~~l~~~~--~~~TvIiItH 527 (529)
T TIGR02868 505 ------TE-----SELLEDLLAAL--SGKTVVVITH 527 (529)
T ss_pred ------HH-----HHHHHHHHHhc--CCCEEEEEec
Confidence 22 25555565542 4789999888
No 256
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.43 E-value=2.3e-06 Score=85.60 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 33 ~i~~Ge~~~liG~NGsGKSTLl~~l~G 59 (510)
T PRK15439 33 TLHAGEVHALLGGNGAGKSTLMKIIAG 59 (510)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999999996653
No 257
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=9.2e-07 Score=83.21 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=34.2
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
+++++|+|+.++.+.. ..+ .++++.|+++.++.+.++|+++|-.
T Consensus 171 ~P~llilDEPts~LD~--------~~~----~~il~lL~~l~~~~g~til~iTHdl 214 (326)
T PRK11022 171 RPKLLIADEPTTALDV--------TIQ----AQIIELLLELQQKENMALVLITHDL 214 (326)
T ss_pred CCCEEEEeCCCCCCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 7899999998877532 222 3788888999888899999999954
No 258
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.43 E-value=2.3e-06 Score=74.66 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=24.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+.+|+++.|.|++|+|||||+..++.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (198)
T TIGR01189 22 TLNAGEALQVTGPNGIGKTTLLRILAG 48 (198)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999996654
No 259
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.43 E-value=2.6e-06 Score=77.85 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=41.8
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-... +...
T Consensus 168 ~p~illLDEPt~~LD~--------~~~----~~l~~~l~~~~~~~g~tiiivsH~~~~------------------~~~~ 217 (265)
T TIGR02769 168 KPKLIVLDEAVSNLDM--------VLQ----AVILELLRKLQQAFGTAYLFITHDLRL------------------VQSF 217 (265)
T ss_pred CCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHhcCcEEEEEeCCHHH------------------HHHH
Confidence 7899999998766431 112 367778888887779999999996541 3446
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 218 ~d~i~~l~~ 226 (265)
T TIGR02769 218 CQRVAVMDK 226 (265)
T ss_pred hcEEEEEeC
Confidence 677777764
No 260
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.43 E-value=9.6e-07 Score=78.64 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=24.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 70 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTLLRLLAG 70 (224)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999999997664
No 261
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.42 E-value=2.9e-07 Score=81.36 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+.+|+++.|.|++|+|||||+..++.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 578999999999999999999997654
No 262
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.42 E-value=2e-06 Score=76.62 Aligned_cols=59 Identities=22% Similarity=0.314 Sum_probs=41.8
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-.. .+...
T Consensus 163 ~p~lllLDEPt~~LD~--------~~~----~~l~~~l~~~~~~~~~tii~~sH~~~------------------~~~~~ 212 (228)
T cd03257 163 NPKLLIADEPTSALDV--------SVQ----AQILDLLKKLQEELGLTLLFITHDLG------------------VVAKI 212 (228)
T ss_pred CCCEEEecCCCCCCCH--------HHH----HHHHHHHHHHHHHcCCEEEEEeCCHH------------------HHHHh
Confidence 7899999998876431 222 36777788888777899999999654 13446
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 213 ~d~i~~l~~ 221 (228)
T cd03257 213 ADRVAVMYA 221 (228)
T ss_pred cCeEEEEeC
Confidence 677777764
No 263
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.42 E-value=4.6e-06 Score=76.36 Aligned_cols=60 Identities=13% Similarity=0.239 Sum_probs=42.1
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhh
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAH 299 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~ 299 (352)
.+++++++|+.++-+.. ..+ ..+.+.|+.++++++.+||+++|-... +..
T Consensus 168 ~~p~lllLDEPt~~LD~--------~~~----~~~~~~l~~~~~~~~~tiiivsH~~~~------------------i~~ 217 (268)
T PRK10419 168 VEPKLLILDEAVSNLDL--------VLQ----AGVIRLLKKLQQQFGTACLFITHDLRL------------------VER 217 (268)
T ss_pred cCCCEEEEeCCCcccCH--------HHH----HHHHHHHHHHHHHcCcEEEEEECCHHH------------------HHH
Confidence 37899999998876431 222 267777888887779999999986541 345
Q ss_pred ccceEEEEEe
Q 047388 300 AVTIRLMFRK 309 (352)
Q Consensus 300 ~~~~~i~L~~ 309 (352)
++|.++.|..
T Consensus 218 ~~d~i~~l~~ 227 (268)
T PRK10419 218 FCQRVMVMDN 227 (268)
T ss_pred hCCEEEEEEC
Confidence 6677777754
No 264
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.42 E-value=2.4e-06 Score=85.01 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=24.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|||||||+..++.
T Consensus 25 ~i~~Ge~~~liG~nGsGKSTLl~~l~G 51 (490)
T PRK10938 25 TLNAGDSWAFVGANGSGKSALARALAG 51 (490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999999996654
No 265
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.42 E-value=5e-06 Score=73.91 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=24.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+.+|+++.|.|++|+|||||+..++.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 22 TVPKNSVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 477999999999999999999996654
No 266
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=5.2e-07 Score=83.15 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=24.7
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
=-+++|+++.|.|++|+|||||+..++.
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 55 (280)
T PRK13649 28 LTIEDGSYTAFIGHTGSGKSTIMQLLNG 55 (280)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999999997654
No 267
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=1.1e-06 Score=79.67 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=24.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+.+|+++.|.|++|+|||||+..++.
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14249 26 DFPERQITAIIGPSGCGKSTLLRALNR 52 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 467999999999999999999997654
No 268
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.41 E-value=2.6e-06 Score=87.22 Aligned_cols=45 Identities=20% Similarity=0.443 Sum_probs=34.8
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++|+|+.++.+. ...+ .++++.|++++++++.+||+++|-..
T Consensus 481 ~p~llllDEPts~LD--------~~~~----~~i~~ll~~l~~~~g~tvi~isHdl~ 525 (623)
T PRK10261 481 NPKVIIADEAVSALD--------VSIR----GQIINLLLDLQRDFGIAYLFISHDMA 525 (623)
T ss_pred CCCEEEEeCCcccCC--------HHHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 799999999887653 2222 37788888888888999999999543
No 269
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.41 E-value=3e-06 Score=76.31 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=24.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.+|+++.|.|++|+|||||+..++..
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999977643
No 270
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.41 E-value=1.4e-06 Score=78.27 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=24.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|+|||||+..++..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 24 RIKPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999999976643
No 271
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.41 E-value=6.2e-06 Score=68.16 Aligned_cols=107 Identities=18% Similarity=0.164 Sum_probs=61.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
-+++|+++.|.|++|+|||||+..++.. .++ ..+ .++++.. ..+.+....
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~--~~~----~~G-~i~~~~~-----------------------~~i~~~~~l 71 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGE--LEP----DEG-IVTWGST-----------------------VKIGYFEQL 71 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCC--CCC----Cce-EEEECCe-----------------------EEEEEEccC
Confidence 5789999999999999999999966543 222 233 3455431 012222223
Q ss_pred CHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 202 ~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+..+.. .+. +.+.+. .+++++++|+..+-+.. ..+ ..+.+.|+++ +.++++++|-..
T Consensus 72 S~G~~~-rv~-laral~-~~p~illlDEP~~~LD~--------~~~----~~l~~~l~~~----~~til~~th~~~ 128 (144)
T cd03221 72 SGGEKM-RLA-LAKLLL-ENPNLLLLDEPTNHLDL--------ESI----EALEEALKEY----PGTVILVSHDRY 128 (144)
T ss_pred CHHHHH-HHH-HHHHHh-cCCCEEEEeCCccCCCH--------HHH----HHHHHHHHHc----CCEEEEEECCHH
Confidence 333322 222 222222 37899999998766431 222 1444444443 578999988653
No 272
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.41 E-value=3.2e-06 Score=76.94 Aligned_cols=45 Identities=22% Similarity=0.294 Sum_probs=33.5
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+|+++++|+.++-+.. .. ...+...|+.++++++.+||+++|-..
T Consensus 169 ~p~llllDEPt~~LD~--------~~----~~~l~~~l~~~~~~~~~tii~isH~~~ 213 (258)
T PRK11701 169 HPRLVFMDEPTGGLDV--------SV----QARLLDLLRGLVRELGLAVVIVTHDLA 213 (258)
T ss_pred CCCEEEEcCCcccCCH--------HH----HHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 7899999998876432 11 136777788887777999999999654
No 273
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.41 E-value=3.1e-06 Score=76.56 Aligned_cols=27 Identities=26% Similarity=0.446 Sum_probs=24.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK11264 25 EVKPGEVVAIIGPSGSGKTTLLRCINL 51 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999999997654
No 274
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.41 E-value=5.6e-06 Score=74.49 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=24.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|+|||||+..++..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 22 TVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999977643
No 275
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.41 E-value=1.7e-06 Score=87.98 Aligned_cols=132 Identities=17% Similarity=0.269 Sum_probs=74.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCc-------cccccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDP-------GAVLDN 194 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~-------~~~~~~ 194 (352)
=+++|+.+.|+|++|||||||+.-++..... . .+.++++..+- .........+.+++-+ .++.+|
T Consensus 365 ~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p------~-~G~I~i~g~~i-~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~N 436 (582)
T PRK11176 365 KIPAGKTVALVGRSGSGKSTIANLLTRFYDI------D-EGEILLDGHDL-RDYTLASLRNQVALVSQNVHLFNDTIANN 436 (582)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHhccCC------C-CceEEECCEEh-hhcCHHHHHhhceEEccCceeecchHHHH
Confidence 4789999999999999999999966553322 2 33455655321 1111222333344332 245566
Q ss_pred EEEEec--CCHHHHHHHHHH---------H-------------------------HHHhhcCCceEEEEcccccchhccc
Q 047388 195 IIYARA--YTYEHQYNLLLG---------L-------------------------AAKMSEEPFRLLIVDSVIALFRVDF 238 (352)
Q Consensus 195 i~~~~~--~~~~~~~~~l~~---------l-------------------------~~~l~~~~~~lvvIDsl~~l~~~~~ 238 (352)
+.+... .+.++..+.++. + .+.+. .+++++++|+.++.+..+
T Consensus 437 i~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall-~~~~ililDEptsaLD~~- 514 (582)
T PRK11176 437 IAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALL-RDSPILILDEATSALDTE- 514 (582)
T ss_pred HhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHH-hCCCEEEEECccccCCHH-
Confidence 665432 233333222221 0 01111 268999999988875421
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 239 TGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 239 ~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.+ ..+.+.|+++. .++|+|+++|-.
T Consensus 515 ------t~-----~~i~~~l~~~~--~~~tvI~VtHr~ 539 (582)
T PRK11176 515 ------SE-----RAIQAALDELQ--KNRTSLVIAHRL 539 (582)
T ss_pred ------HH-----HHHHHHHHHHh--CCCEEEEEecch
Confidence 12 25666676653 368999988854
No 276
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=3.3e-06 Score=76.00 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+.+|+++.|.|++|+|||||+..++.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (242)
T PRK11124 24 DCPQGETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 467999999999999999999997654
No 277
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.40 E-value=5.5e-06 Score=84.79 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=34.9
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++++|+.++.+.. ..+ .++++.|+++++++|.+||+++|-..
T Consensus 186 ~P~lLllDEPt~~LD~--------~~~----~~l~~ll~~l~~~~g~tvi~itHdl~ 230 (623)
T PRK10261 186 RPAVLIADEPTTALDV--------TIQ----AQILQLIKVLQKEMSMGVIFITHDMG 230 (623)
T ss_pred CCCEEEEeCCCCccCH--------HHH----HHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 7999999999887532 222 37788888888888999999999543
No 278
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.40 E-value=5.3e-06 Score=73.04 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++| ++.|.|++|+|||||+..++.
T Consensus 22 ~i~~g-~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 22 TLGPG-MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred EEcCC-cEEEECCCCCCHHHHHHHHhC
Confidence 46788 999999999999999996654
No 279
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.40 E-value=1.3e-06 Score=78.27 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=24.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|+|||||+..++..
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999999977643
No 280
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.39 E-value=5.3e-06 Score=76.12 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (272)
T PRK15056 29 TVPGGSIAALVGVNGSGKSTLFKALMG 55 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999996654
No 281
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.39 E-value=5.4e-06 Score=75.27 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=27.0
Q ss_pred hhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 114 ALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 114 ~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.|+.+- =+.+|+++.|.|++|+|||||+..++..
T Consensus 16 ~l~~i~--~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 16 KLHRLP--VPREGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred hhhcCC--CCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455543 2789999999999999999999966543
No 282
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.38 E-value=3.3e-06 Score=84.06 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=24.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|||||||+..++.
T Consensus 20 ~i~~Ge~~~liG~nGsGKSTLl~~l~G 46 (491)
T PRK10982 20 KVRPHSIHALMGENGAGKSTLLKCLFG 46 (491)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 578999999999999999999996653
No 283
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.38 E-value=1.5e-06 Score=77.79 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=24.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|+|||||+..++..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999999966543
No 284
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.38 E-value=1.7e-06 Score=84.18 Aligned_cols=142 Identities=25% Similarity=0.328 Sum_probs=82.1
Q ss_pred CChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC-CChhhHHHHHHHcCC---
Q 047388 111 GSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT-FRPDRIVPIAERFGM--- 186 (352)
Q Consensus 111 G~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~-~~~~rl~~~~~~~~~--- 186 (352)
|+..||.+- =-+.+|++..+.|++|+|||||+.-++.. .++ ..+.++++.+.. |.. ..-+++.|+
T Consensus 20 gV~AL~~v~-l~v~~GEV~aL~GeNGAGKSTLmKiLsGv--~~p-----~~G~I~~~G~~~~~~s---p~~A~~~GI~~V 88 (500)
T COG1129 20 GVKALDGVS-LTVRPGEVHALLGENGAGKSTLMKILSGV--YPP-----DSGEILIDGKPVAFSS---PRDALAAGIATV 88 (500)
T ss_pred Cceeeccce-eEEeCceEEEEecCCCCCHHHHHHHHhCc--ccC-----CCceEEECCEEccCCC---HHHHHhCCcEEE
Confidence 445555532 35889999999999999999999965443 332 344667776532 111 112333333
Q ss_pred ------Cc-ccccccEEEEecCCH-------HHHH----HHHH-----------------------HHHHHhhcCCceEE
Q 047388 187 ------DP-GAVLDNIIYARAYTY-------EHQY----NLLL-----------------------GLAAKMSEEPFRLL 225 (352)
Q Consensus 187 ------~~-~~~~~~i~~~~~~~~-------~~~~----~~l~-----------------------~l~~~l~~~~~~lv 225 (352)
-| .++.+|+++.+.... .... .++. .+.+.+. .+.+++
T Consensus 89 ~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~-~~arll 167 (500)
T COG1129 89 HQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALS-FDARVL 167 (500)
T ss_pred eechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHh-cCCCEE
Confidence 22 245566665443211 1111 1111 1112222 378999
Q ss_pred EEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 226 IVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 226 vIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
|+|+.++.+.. .+...+++.++++. +.|++||+++|-..
T Consensus 168 IlDEPTaaLt~------------~E~~~Lf~~ir~Lk-~~Gv~ii~ISHrl~ 206 (500)
T COG1129 168 ILDEPTAALTV------------KETERLFDLIRRLK-AQGVAIIYISHRLD 206 (500)
T ss_pred EEcCCcccCCH------------HHHHHHHHHHHHHH-hCCCEEEEEcCcHH
Confidence 99999987542 12346666677764 57999999999443
No 285
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.38 E-value=3.7e-06 Score=67.72 Aligned_cols=111 Identities=22% Similarity=0.143 Sum_probs=64.2
Q ss_pred EEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCHHHHHH
Q 047388 129 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYN 208 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 208 (352)
+.|.||||+|||+++..++... +..+++++....... .......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---------~~~~~~i~~~~~~~~---------------------------~~~~~~~ 44 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---------GFPFIEIDGSELISS---------------------------YAGDSEQ 44 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---------TSEEEEEETTHHHTS---------------------------STTHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhc---------ccccccccccccccc---------------------------ccccccc
Confidence 5799999999999999888763 346777776532100 0011112
Q ss_pred HHHHHHHHhhcCC-ceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHH-hCcEEEEEccccc
Q 047388 209 LLLGLAAKMSEEP-FRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEE-FNVAVYMTNQVIA 277 (352)
Q Consensus 209 ~l~~l~~~l~~~~-~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~-~~~~viv~~h~~~ 277 (352)
.+..+........ +.+++||.+..+.... ... ........+..++..+...... .++.+|.+++...
T Consensus 45 ~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~-~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~ 113 (132)
T PF00004_consen 45 KIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPS-SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD 113 (132)
T ss_dssp HHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STS-SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG
T ss_pred ccccccccccccccceeeeeccchhccccc-ccc-cccccccccceeeecccccccccccceeEEeeCChh
Confidence 2222222233334 8999999999998764 111 1122223445666666555443 3477777766544
No 286
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.38 E-value=3.7e-06 Score=77.31 Aligned_cols=27 Identities=37% Similarity=0.455 Sum_probs=24.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-|++|+++.|.|++|+|||||+..++.
T Consensus 43 ~i~~Ge~~~I~G~nGsGKSTLl~~l~G 69 (276)
T PRK14271 43 GFPARAVTSLMGPTGSGKTTFLRTLNR 69 (276)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999999997764
No 287
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=2.5e-06 Score=77.44 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=24.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+.+|+++.|.|++|+|||||+..++.
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (255)
T PRK11231 24 SLPTGKITALIGPNGCGKSTLLKCFAR 50 (255)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 467999999999999999999997654
No 288
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=2.8e-06 Score=84.92 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+.+|+++.|.||+|||||||+..++.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (506)
T PRK13549 27 KVRAGEIVSLCGENGAGKSTLMKVLSG 53 (506)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999999996654
No 289
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.37 E-value=1.4e-06 Score=88.71 Aligned_cols=131 Identities=19% Similarity=0.225 Sum_probs=75.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCc-------cccccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDP-------GAVLDN 194 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~-------~~~~~~ 194 (352)
-+++|+.+.|+|++|||||||+.-++... | ..| .++++..+- .......+.+..++-+ .++.+|
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~--p-----~~G-~I~i~g~~i-~~~~~~~lr~~i~~v~Q~~~LF~~TI~eN 442 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL--P-----YQG-SLKINGIEL-RELDPESWRKHLSWVGQNPQLPHGTLRDN 442 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC--C-----CCc-EEEECCEec-ccCCHHHHHhheEEecCCCcCCCcCHHHH
Confidence 47899999999999999999999765543 3 333 345554321 1111222333444332 346677
Q ss_pred EEEEec-CCHHHHHHHHHH---------HH-------------------------HHhhcCCceEEEEcccccchhcccC
Q 047388 195 IIYARA-YTYEHQYNLLLG---------LA-------------------------AKMSEEPFRLLIVDSVIALFRVDFT 239 (352)
Q Consensus 195 i~~~~~-~~~~~~~~~l~~---------l~-------------------------~~l~~~~~~lvvIDsl~~l~~~~~~ 239 (352)
+.+.+. .+.++..+.++. ++ +.+- .+++++++|+.++....+
T Consensus 443 I~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll-~~~~IliLDE~TSaLD~~-- 519 (588)
T PRK11174 443 VLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALL-QPCQLLLLDEPTASLDAH-- 519 (588)
T ss_pred hhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHh-cCCCEEEEeCCccCCCHH--
Confidence 777633 333433332221 10 1111 268999999988875321
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 240 GRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 240 ~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.+ ..+.+.|.++. .+.|+|+++|-.
T Consensus 520 -----te-----~~i~~~l~~~~--~~~TvIiItHrl 544 (588)
T PRK11174 520 -----SE-----QLVMQALNAAS--RRQTTLMVTHQL 544 (588)
T ss_pred -----HH-----HHHHHHHHHHh--CCCEEEEEecCh
Confidence 22 25556666664 367888888854
No 290
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.37 E-value=7.6e-06 Score=71.47 Aligned_cols=28 Identities=25% Similarity=0.189 Sum_probs=24.1
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
+..|+++.|+||+|+|||||+.+++...
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3447999999999999999999988655
No 291
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.36 E-value=6.8e-07 Score=79.25 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=24.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.||+|+|||||+..++.
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 26 TIRAGEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999999997654
No 292
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.36 E-value=8e-06 Score=81.93 Aligned_cols=45 Identities=9% Similarity=0.065 Sum_probs=34.7
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+|+++++|+.++.+.. ..+ ..+++.|++++++++.+||+++|-..
T Consensus 186 ~p~lllLDEPt~~LD~--------~~~----~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 186 EPFLFLADEPTGTLDP--------QTA----KLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred CCCEEEeeCCcccCCH--------HHH----HHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 7999999998887532 222 37778888888888999999999654
No 293
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.36 E-value=3.1e-06 Score=84.44 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.8
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
--+++|+++.|.|++|+|||||+..++.
T Consensus 25 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G 52 (501)
T PRK11288 25 FDCRAGQVHALMGENGAGKSTLLKILSG 52 (501)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3688999999999999999999996654
No 294
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.36 E-value=1.2e-06 Score=78.07 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=24.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
=+++|+++.|.|++|+|||||+..++..
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999999977643
No 295
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.36 E-value=2.6e-05 Score=74.81 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=55.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCC---hhhHHHHHHHcCCCcccccccEEEE
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFR---PDRIVPIAERFGMDPGAVLDNIIYA 198 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~---~~rl~~~~~~~~~~~~~~~~~i~~~ 198 (352)
|..++.++.++||+|+||||++.++|...... .+.+|.+++++. +. ...++..++..+++. .
T Consensus 219 g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~-----~G~~V~Lit~Dt-~R~aA~eQLk~yAe~lgvp~---------~ 283 (432)
T PRK12724 219 GKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLH-----MGKSVSLYTTDN-YRIAAIEQLKRYADTMGMPF---------Y 283 (432)
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHHHh-----cCCeEEEecccc-hhhhHHHHHHHHHHhcCCCe---------e
Confidence 34567899999999999999999999765321 467888888764 22 223344444444432 1
Q ss_pred ecCCHHHHHHHHHHHHHHhhcCCceEEEEccccc
Q 047388 199 RAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIA 232 (352)
Q Consensus 199 ~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~ 232 (352)
. ...... +...+...+.++|+||+...
T Consensus 284 ~---~~~~~~----l~~~l~~~~~D~VLIDTaGr 310 (432)
T PRK12724 284 P---VKDIKK----FKETLARDGSELILIDTAGY 310 (432)
T ss_pred e---hHHHHH----HHHHHHhCCCCEEEEeCCCC
Confidence 1 111122 22233345789999998443
No 296
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.36 E-value=2.4e-06 Score=85.40 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=24.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|||||||+..++.
T Consensus 27 ~i~~Ge~~~liG~nGsGKSTLl~~i~G 53 (510)
T PRK09700 27 TVYPGEIHALLGENGAGKSTLMKVLSG 53 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 578999999999999999999996653
No 297
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.35 E-value=1.2e-05 Score=69.40 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=33.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
-+++|++..|.||+|+|||||+..++..... ..++|.|..-.
T Consensus 23 ~~~pGev~ailGPNGAGKSTlLk~LsGel~p------~~G~v~~~g~~ 64 (259)
T COG4559 23 DLRPGEVLAILGPNGAGKSTLLKALSGELSP------DSGEVTLNGVP 64 (259)
T ss_pred eccCCcEEEEECCCCccHHHHHHHhhCccCC------CCCeEeeCCcC
Confidence 4789999999999999999999988766554 45677776543
No 298
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.34 E-value=4.3e-06 Score=74.52 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=25.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+.+|+++.|.|++|+|||||+..++...
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 22 DIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 57899999999999999999999776543
No 299
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.34 E-value=7.2e-07 Score=77.64 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=24.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
=+++|+++.|.|++|+|||||+..++.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSLLRMIAG 48 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 467999999999999999999997654
No 300
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.34 E-value=4.2e-06 Score=83.49 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=40.7
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+.+.|+.++++ +.+||+++|-.. .+...
T Consensus 421 ~p~lllLDEPt~~LD~--------~~~----~~l~~~l~~l~~~-g~tviivsHd~~------------------~~~~~ 469 (500)
T TIGR02633 421 NPRVLILDEPTRGVDV--------GAK----YEIYKLINQLAQE-GVAIIVVSSELA------------------EVLGL 469 (500)
T ss_pred CCCEEEEcCCCCCcCH--------hHH----HHHHHHHHHHHhC-CCEEEEECCCHH------------------HHHHh
Confidence 7899999998877532 222 2566677777654 899999999653 24557
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 470 ~d~v~~l~~ 478 (500)
T TIGR02633 470 SDRVLVIGE 478 (500)
T ss_pred CCEEEEEEC
Confidence 787887764
No 301
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.34 E-value=2e-06 Score=77.21 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=24.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
=+++|+++.|.|++|+|||||+..++..
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 25 TIPPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred EecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 4789999999999999999999976643
No 302
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=5e-06 Score=81.47 Aligned_cols=130 Identities=21% Similarity=0.302 Sum_probs=72.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC--CCChhhHHHHHHHcCCCc-------cccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG--TFRPDRIVPIAERFGMDP-------GAVL 192 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~--~~~~~rl~~~~~~~~~~~-------~~~~ 192 (352)
-+++|+.+.|+|+||||||||+.-++.- +.| ..+.+.++.-. ++++ ..+.++..+-+ .++.
T Consensus 343 t~~~g~~talvG~SGaGKSTLl~lL~G~-~~~------~~G~I~vng~~l~~l~~---~~~~k~i~~v~Q~p~lf~gTir 412 (559)
T COG4988 343 TIKAGQLTALVGASGAGKSTLLNLLLGF-LAP------TQGEIRVNGIDLRDLSP---EAWRKQISWVSQNPYLFAGTIR 412 (559)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCc-CCC------CCceEEECCccccccCH---HHHHhHeeeeCCCCccccccHH
Confidence 4789999999999999999999855432 222 22333443221 1122 22333333222 2444
Q ss_pred ccEEEEecCCH-HHHHHHHHH---------------------------------HHHHhhcCCceEEEEcccccchhccc
Q 047388 193 DNIIYARAYTY-EHQYNLLLG---------------------------------LAAKMSEEPFRLLIVDSVIALFRVDF 238 (352)
Q Consensus 193 ~~i~~~~~~~~-~~~~~~l~~---------------------------------l~~~l~~~~~~lvvIDsl~~l~~~~~ 238 (352)
+|+.+.+.... ++..+.+++ +.+.+- .+.+++++|+.++....+
T Consensus 413 eNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll-~~~~l~llDEpTA~LD~e- 490 (559)
T COG4988 413 ENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALL-SPASLLLLDEPTAHLDAE- 490 (559)
T ss_pred HHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhc-CCCCEEEecCCccCCCHh-
Confidence 56655554322 222221111 111111 257899999999886432
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 239 TGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 239 ~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
++ ..+.+.|.+++++ .||++++|--
T Consensus 491 ------tE-----~~i~~~l~~l~~~--ktvl~itHrl 515 (559)
T COG4988 491 ------TE-----QIILQALQELAKQ--KTVLVITHRL 515 (559)
T ss_pred ------HH-----HHHHHHHHHHHhC--CeEEEEEcCh
Confidence 22 2677788888875 7888888844
No 303
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=6.7e-06 Score=77.58 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=33.9
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
+++++|+|+.++.+.. ..+ .++++.|+++.++.+++||+++|-.
T Consensus 176 ~P~llilDEPts~LD~--------~~~----~~i~~lL~~l~~~~g~tii~itHdl 219 (330)
T PRK15093 176 QPRLLIADEPTNAMEP--------TTQ----AQIFRLLTRLNQNNNTTILLISHDL 219 (330)
T ss_pred CCCEEEEeCCCCcCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEECCH
Confidence 7899999998876532 222 3778888888888899999999953
No 304
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.32 E-value=7.1e-06 Score=74.11 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 23 DIPKNQVTALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999999996654
No 305
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.32 E-value=4.8e-06 Score=75.23 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=25.1
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
--+.+|+++.|.|++|+|||||+..++..
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 22 LEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 35789999999999999999999966543
No 306
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.32 E-value=1.5e-06 Score=89.98 Aligned_cols=28 Identities=32% Similarity=0.357 Sum_probs=24.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
=+++|+.+.|+|++|||||||+.-++..
T Consensus 475 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl 502 (686)
T TIGR03797 475 QIEPGEFVAIVGPSGSGKSTLLRLLLGF 502 (686)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999999966543
No 307
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.31 E-value=1.5e-06 Score=76.89 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=24.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
=+++|+++.|.|++|+|||||+..++..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 23 RIPTGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4679999999999999999999976544
No 308
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.31 E-value=1.8e-06 Score=78.04 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=24.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.+|+++.|+|++|+|||||+..++..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 24 QIEQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4678999999999999999999977653
No 309
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.31 E-value=4.3e-06 Score=78.22 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=23.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
-+.+|+++-|+|.+||||||||+-+.
T Consensus 345 ~ikrGelvFliG~NGsGKST~~~LLt 370 (546)
T COG4615 345 TIKRGELVFLIGGNGSGKSTLAMLLT 370 (546)
T ss_pred EEecCcEEEEECCCCCcHHHHHHHHh
Confidence 47899999999999999999999543
No 310
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.31 E-value=3.6e-06 Score=85.38 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=24.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
=+++|+.+.|+|++|+|||||+..++..
T Consensus 354 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl 381 (571)
T TIGR02203 354 VIEPGETVALVGRSGSGKSTLVNLIPRF 381 (571)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999999966543
No 311
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.31 E-value=1.8e-06 Score=88.00 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
=+++|+.+.|+|++|||||||+.-++.
T Consensus 363 ~i~~Ge~iaIvG~SGsGKSTLl~lL~g 389 (592)
T PRK10790 363 SVPSRGFVALVGHTGSGKSTLASLLMG 389 (592)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999999996654
No 312
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.31 E-value=1.5e-06 Score=79.50 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=25.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+++|+++.|.|++|+|||||+..++...
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 41 DIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 57899999999999999999999776543
No 313
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.30 E-value=4.9e-06 Score=83.03 Aligned_cols=58 Identities=10% Similarity=0.198 Sum_probs=41.0
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++.+.. ..+ ..+.+.|+.++++ |.+||+++|-.. .+...
T Consensus 413 ~p~lllLDEPt~~LD~--------~~~----~~l~~~l~~~~~~-g~tviivtHd~~------------------~~~~~ 461 (501)
T PRK10762 413 RPKVLILDEPTRGVDV--------GAK----KEIYQLINQFKAE-GLSIILVSSEMP------------------EVLGM 461 (501)
T ss_pred CCCEEEEcCCCCCCCH--------hHH----HHHHHHHHHHHHC-CCEEEEEcCCHH------------------HHHhh
Confidence 7899999998877532 222 3677777887665 899999999654 13456
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 462 ~d~v~~l~~ 470 (501)
T PRK10762 462 SDRILVMHE 470 (501)
T ss_pred CCEEEEEEC
Confidence 777777764
No 314
>PRK13409 putative ATPase RIL; Provisional
Probab=98.30 E-value=8.7e-06 Score=82.54 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=35.5
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.+++++++|+.++.+. ...| ..+.+.|++++++.+.+||+++|-..
T Consensus 470 ~~p~llLLDEPt~~LD--------~~~~----~~l~~~l~~l~~~~g~tviivsHD~~ 515 (590)
T PRK13409 470 RDADLYLLDEPSAHLD--------VEQR----LAVAKAIRRIAEEREATALVVDHDIY 515 (590)
T ss_pred cCCCEEEEeCCccCCC--------HHHH----HHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 3799999999988753 2333 37778888998888999999999543
No 315
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=1.5e-05 Score=80.12 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=24.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-|.+|+++.|.|++|||||||+..++.
T Consensus 23 ~i~~Ge~~~liG~NGsGKSTLl~~l~G 49 (530)
T PRK15064 23 KFGGGNRYGLIGANGCGKSTFMKILGG 49 (530)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999999996654
No 316
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.30 E-value=1.6e-06 Score=78.48 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=24.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|||||||+..++..
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 25 DIEENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4779999999999999999999977653
No 317
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.30 E-value=7.9e-06 Score=81.98 Aligned_cols=59 Identities=12% Similarity=0.167 Sum_probs=43.1
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++.+.. ..+ ..+.+.|++++++++.+||+++|-... +...
T Consensus 445 ~p~lLllDEPt~~LD~--------~~~----~~l~~~l~~l~~~~g~tvi~vsHd~~~------------------~~~~ 494 (520)
T TIGR03269 445 EPRIVILDEPTGTMDP--------ITK----VDVTHSILKAREEMEQTFIIVSHDMDF------------------VLDV 494 (520)
T ss_pred CCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHHcCcEEEEEeCCHHH------------------HHHh
Confidence 7999999998877532 222 367788888888889999999996541 3456
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 495 ~d~i~~l~~ 503 (520)
T TIGR03269 495 CDRAALMRD 503 (520)
T ss_pred CCEEEEEEC
Confidence 777777764
No 318
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.29 E-value=7.8e-06 Score=74.57 Aligned_cols=146 Identities=14% Similarity=0.034 Sum_probs=71.9
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCccc-ccccEEEEecCCHHH
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGA-VLDNIIYARAYTYEH 205 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~-~~~~i~~~~~~~~~~ 205 (352)
..+.|.|+||+|||||+..++..... +.+-++++...-.....-.+++..++.-++. +-.+..+... ...
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~-------~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~--~~k 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST-------GISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG--CPK 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC-------CCceEEECCEEeecchhHHHHHHHhccccccccccccccccc--chH
Confidence 57899999999999999977654332 2333455443321111123444444433321 1111111111 111
Q ss_pred HHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCccc
Q 047388 206 QYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFI 285 (352)
Q Consensus 206 ~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~ 285 (352)
.. .+...+...+|+++++|++... . .+...++.+ + .|.++|+++|-..- +..
T Consensus 183 -~~---~~~~~i~~~~P~villDE~~~~---------------e---~~~~l~~~~-~-~G~~vI~ttH~~~~-~~~--- 234 (270)
T TIGR02858 183 -AE---GMMMLIRSMSPDVIVVDEIGRE---------------E---DVEALLEAL-H-AGVSIIATAHGRDV-EDL--- 234 (270)
T ss_pred -HH---HHHHHHHhCCCCEEEEeCCCcH---------------H---HHHHHHHHH-h-CCCEEEEEechhHH-HHH---
Confidence 11 1233344468999999996321 1 122222332 2 58999999995321 100
Q ss_pred CCCCCCCcchhhh-hccceEEEEEeec
Q 047388 286 SDPKKPAGGHVLA-HAVTIRLMFRKGK 311 (352)
Q Consensus 286 ~~~~~~~gg~~~~-~~~~~~i~L~~~~ 311 (352)
...|.+...+. .+++..+.|++.+
T Consensus 235 --~~r~~~~~l~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 235 --YKRPVFKELIENEAFERYVVLSRRK 259 (270)
T ss_pred --HhChHHHHHHhcCceEEEEEEecCC
Confidence 01233333333 3456666666543
No 319
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=2.2e-06 Score=77.74 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
=+++|+++.|.|++|+|||||+..++.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (254)
T PRK14273 29 KILKNSITALIGPSGCGKSTFLRTLNR 55 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999999997654
No 320
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.29 E-value=3.9e-06 Score=77.00 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=25.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+++|+++.|+|++|+|||||+..++...
T Consensus 26 ~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 26 SISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 57899999999999999999999776543
No 321
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.28 E-value=1.1e-06 Score=73.06 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=32.4
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQV 275 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~ 275 (352)
.|++++-|+.+.-+ .. ..-.++...|-.+.+++|.|.|+++|-
T Consensus 164 ~P~vLfADEPTGNL----------D~--~Tg~~iaDLlF~lnre~G~TlVlVTHD 206 (228)
T COG4181 164 RPDVLFADEPTGNL----------DR--ATGDKIADLLFALNRERGTTLVLVTHD 206 (228)
T ss_pred CCCEEeccCCCCCc----------ch--hHHHHHHHHHHHHhhhcCceEEEEeCC
Confidence 68888888776442 21 122478888999999999999999984
No 322
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.28 E-value=1.5e-05 Score=72.13 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=24.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|+|++|+|||||+..++.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 29 SINKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 578999999999999999999997654
No 323
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.28 E-value=5.2e-06 Score=82.86 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=24.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|||||||+..++.
T Consensus 23 ~i~~Ge~~~liG~nGsGKSTLl~~i~G 49 (500)
T TIGR02633 23 EVRPGECVGLCGENGAGKSTLMKILSG 49 (500)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 678999999999999999999997654
No 324
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.28 E-value=7.3e-06 Score=74.11 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=24.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.+|+++.|.|++|+|||||+..++..
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 25 PIPARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999999977653
No 325
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.28 E-value=7.6e-06 Score=82.26 Aligned_cols=59 Identities=14% Similarity=0.216 Sum_probs=43.1
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++.+.. ..+ ..+...|++++++++.+||+++|-... +...
T Consensus 443 ~p~llllDEPt~~LD~--------~~~----~~l~~~l~~~~~~~~~tvi~vsHd~~~------------------~~~~ 492 (529)
T PRK15134 443 KPSLIILDEPTSSLDK--------TVQ----AQILALLKSLQQKHQLAYLFISHDLHV------------------VRAL 492 (529)
T ss_pred CCCEEEeeCCccccCH--------HHH----HHHHHHHHHHHHhhCCEEEEEeCCHHH------------------HHHh
Confidence 7899999998877532 222 377788888888889999999996541 3456
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 493 ~d~i~~l~~ 501 (529)
T PRK15134 493 CHQVIVLRQ 501 (529)
T ss_pred cCeEEEEEC
Confidence 777777764
No 326
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.28 E-value=5.9e-06 Score=82.47 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|||||||+..++.
T Consensus 275 ~i~~Ge~~~iiG~NGsGKSTLlk~l~G 301 (501)
T PRK11288 275 SVRAGEIVGLFGLVGAGRSELMKLLYG 301 (501)
T ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHcC
Confidence 468999999999999999999997664
No 327
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.27 E-value=3.7e-06 Score=84.48 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=24.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+.+.|+|++|||||||+.-++.
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999999996654
No 328
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.27 E-value=2.6e-06 Score=88.62 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=24.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
=+++|+.+.|+|++|||||||+.-++..
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl 528 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTIAKLVAGL 528 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999999866543
No 329
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=2.5e-06 Score=77.25 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=25.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|+|||||+..++..
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 26 PIYENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999999977653
No 330
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.26 E-value=2.5e-06 Score=88.58 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=24.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
=+++|+.+.|+|++|||||||+.-++.
T Consensus 487 ~i~~G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 487 TIRPGEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999999986654
No 331
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.26 E-value=5.9e-06 Score=82.57 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=24.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|||||||+..++.
T Consensus 284 ~i~~Ge~~~l~G~NGsGKSTLlk~i~G 310 (506)
T PRK13549 284 SLRRGEILGIAGLVGAGRTELVQCLFG 310 (506)
T ss_pred EEcCCcEEEEeCCCCCCHHHHHHHHhC
Confidence 578999999999999999999997764
No 332
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.26 E-value=2.4e-05 Score=66.00 Aligned_cols=60 Identities=18% Similarity=0.387 Sum_probs=43.6
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
.|+++|.|..-.-+ +++-|. ++++.+..+-.+.|+..|.++|--. .+.|.
T Consensus 167 ~P~iIIaDeAl~~L--------D~smrs----Ql~NL~LeLQek~GiSyiYV~QhlG------------------~iKHi 216 (267)
T COG4167 167 RPKIIIADEALASL--------DMSMRS----QLINLMLELQEKQGISYIYVTQHIG------------------MIKHI 216 (267)
T ss_pred CCcEEEehhhhhhc--------cHHHHH----HHHHHHHHHHHHhCceEEEEechhh------------------Hhhhh
Confidence 78999999743221 234443 7788888999999999998876431 36888
Q ss_pred cceEEEEEee
Q 047388 301 VTIRLMFRKG 310 (352)
Q Consensus 301 ~~~~i~L~~~ 310 (352)
+|.+|.+..+
T Consensus 217 ~D~viVM~EG 226 (267)
T COG4167 217 SDQVLVMHEG 226 (267)
T ss_pred cccEEEEecC
Confidence 8998888754
No 333
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.26 E-value=2.8e-06 Score=77.29 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=25.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|+|||||+..++..
T Consensus 34 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 34 SIPENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999999977754
No 334
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.26 E-value=2.7e-05 Score=66.29 Aligned_cols=90 Identities=21% Similarity=0.241 Sum_probs=52.9
Q ss_pred EEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChh---hHHHHHHHcCCCcccccccEEEEecCCHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPD---RIVPIAERFGMDPGAVLDNIIYARAYTYE 204 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~---rl~~~~~~~~~~~~~~~~~i~~~~~~~~~ 204 (352)
++.+.|+||+|||+++..++..... .+.++++++++.. .+. ++..++++.+ +.+.......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~------~g~~v~~i~~D~~-~~~~~~~l~~~~~~~~---------~~~~~~~~~~ 65 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK------KGKKVLLVAADTY-RPAAIEQLRVLGEQVG---------VPVFEEGEGK 65 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH------CCCcEEEEEcCCC-ChHHHHHHHHhcccCC---------eEEEecCCCC
Confidence 6789999999999999999887665 4678999998742 322 1222222222 2222222112
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcccccc
Q 047388 205 HQYNLLLGLAAKMSEEPFRLLIVDSVIAL 233 (352)
Q Consensus 205 ~~~~~l~~l~~~l~~~~~~lvvIDsl~~l 233 (352)
...+++.+........+.++||||.....
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~viiDt~g~~ 94 (173)
T cd03115 66 DPVSIAKRAIEHAREENFDVVIVDTAGRL 94 (173)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEECcccc
Confidence 22222322222233457889999986544
No 335
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.25 E-value=2.2e-05 Score=78.98 Aligned_cols=46 Identities=22% Similarity=0.360 Sum_probs=34.7
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.+|+++++|+.++.+.. ..+ ..+.+.|++++++.+.+||+++|-..
T Consensus 173 ~~p~llllDEPt~~LD~--------~~~----~~l~~~l~~l~~~~g~tvi~vtHd~~ 218 (529)
T PRK15134 173 TRPELLIADEPTTALDV--------SVQ----AQILQLLRELQQELNMGLLFITHNLS 218 (529)
T ss_pred cCCCEEEEcCCCCccCH--------HHH----HHHHHHHHHHHHhcCCeEEEEcCcHH
Confidence 37999999999887532 222 36777888888777999999999643
No 336
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.25 E-value=4.7e-06 Score=84.62 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=25.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
=+++|+.+.|.|++|+|||||+..++...
T Consensus 362 ~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 362 TVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999999999776543
No 337
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.25 E-value=1.3e-05 Score=72.69 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=24.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.+|+++.|.|++|+|||||+..++..
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 26 KIPQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999999966543
No 338
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.25 E-value=2.7e-06 Score=88.49 Aligned_cols=27 Identities=33% Similarity=0.314 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
=+++|+.+.|+|++|||||||+.-++.
T Consensus 496 ~i~~G~~vaIvG~SGsGKSTLlklL~g 522 (708)
T TIGR01193 496 TIKMNSKTTIVGMSGSGKSTLAKLLVG 522 (708)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999999986654
No 339
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.24 E-value=1.2e-05 Score=80.16 Aligned_cols=58 Identities=9% Similarity=0.169 Sum_probs=41.2
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++.+.. ..+ ..+.+.|..+++ .+.|||+++|-... +...
T Consensus 409 ~p~illLDEPt~gLD~--------~~~----~~~~~~l~~l~~-~~~tvi~vsHd~~~------------------~~~~ 457 (491)
T PRK10982 409 QPEILMLDEPTRGIDV--------GAK----FEIYQLIAELAK-KDKGIIIISSEMPE------------------LLGI 457 (491)
T ss_pred CCCEEEEcCCCcccCh--------hHH----HHHHHHHHHHHH-CCCEEEEECCChHH------------------HHhh
Confidence 7999999999877532 222 266667777765 58999999996541 3557
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.+..
T Consensus 458 ~d~v~~l~~ 466 (491)
T PRK10982 458 TDRILVMSN 466 (491)
T ss_pred CCEEEEEEC
Confidence 788888864
No 340
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.24 E-value=6.7e-06 Score=73.22 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=24.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
=+++|+++.|.|++|+|||||+..++..
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999999966543
No 341
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.24 E-value=3.8e-06 Score=76.97 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=24.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|||||||+..++..
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 35 DIPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999999977653
No 342
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.24 E-value=2.6e-05 Score=69.49 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=24.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|+|++|+|||||+..++..
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 29 HVESGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCc
Confidence 5789999999999999999999976644
No 343
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.23 E-value=3.1e-05 Score=79.52 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=24.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-|.+|+++.|+|++|||||||+..++.
T Consensus 23 ~i~~Ge~v~LvG~NGsGKSTLLkiL~G 49 (638)
T PRK10636 23 TINPGQKVGLVGKNGCGKSTLLALLKN 49 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999999999996654
No 344
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.23 E-value=3.9e-06 Score=85.47 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
=+++|+.+.|+|++|+|||||+.-++.
T Consensus 357 ~i~~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 357 EAKPGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 477999999999999999999986643
No 345
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.23 E-value=2.7e-05 Score=69.41 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=30.3
Q ss_pred ceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 222 FRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 222 ~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
++++++|+.+..+.. ..+ ..+.+.|+++++ .+.+||+++|-..
T Consensus 158 ~~llllDEPt~gLD~--------~~~----~~l~~~l~~~~~-~g~tii~itH~~~ 200 (226)
T cd03270 158 GVLYVLDEPSIGLHP--------RDN----DRLIETLKRLRD-LGNTVLVVEHDED 200 (226)
T ss_pred CCEEEEeCCccCCCH--------HHH----HHHHHHHHHHHh-CCCEEEEEEeCHH
Confidence 479999998876432 222 366777777765 5899999998653
No 346
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.23 E-value=6.3e-06 Score=75.06 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=25.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|+|||||+..++..
T Consensus 35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 35 DIAKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999999977654
No 347
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.23 E-value=7.9e-06 Score=78.71 Aligned_cols=133 Identities=16% Similarity=0.154 Sum_probs=73.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcc-------ccccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG-------AVLDN 194 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~-------~~~~~ 194 (352)
-+.+|+...|.||||||||||+..+.... ++ ..+.+.+|.-+ +.+-.-.+.-+..|+-|+ ++-+|
T Consensus 358 ~l~~G~~lgIIGPSgSGKSTLaR~lvG~w--~p-----~~G~VRLDga~-l~qWd~e~lG~hiGYLPQdVeLF~GTIaeN 429 (580)
T COG4618 358 ALQAGEALGIIGPSGSGKSTLARLLVGIW--PP-----TSGSVRLDGAD-LRQWDREQLGRHIGYLPQDVELFDGTIAEN 429 (580)
T ss_pred EecCCceEEEECCCCccHHHHHHHHHccc--cc-----CCCcEEecchh-hhcCCHHHhccccCcCcccceecCCcHHHH
Confidence 36799999999999999999999665433 22 23345555432 111111223334455443 23345
Q ss_pred EEEEe-cCCHHHHHHH---------HHHHH-------------------------HHhhcCCceEEEEcccccchhcccC
Q 047388 195 IIYAR-AYTYEHQYNL---------LLGLA-------------------------AKMSEEPFRLLIVDSVIALFRVDFT 239 (352)
Q Consensus 195 i~~~~-~~~~~~~~~~---------l~~l~-------------------------~~l~~~~~~lvvIDsl~~l~~~~~~ 239 (352)
|.-+. ..+.+...+. +.+++ +.+ -.+|.+||+|+..+-+..
T Consensus 430 IaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl-YG~P~lvVLDEPNsNLD~--- 505 (580)
T COG4618 430 IARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARAL-YGDPFLVVLDEPNSNLDS--- 505 (580)
T ss_pred HHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHH-cCCCcEEEecCCCCCcch---
Confidence 44333 2233322221 11110 111 127999999998776431
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 240 GRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 240 ~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.+|. .+.+.+..+ |..|+++|+++|--
T Consensus 506 ----~GE~-----AL~~Ai~~~-k~rG~~vvviaHRP 532 (580)
T COG4618 506 ----EGEA-----ALAAAILAA-KARGGTVVVIAHRP 532 (580)
T ss_pred ----hHHH-----HHHHHHHHH-HHcCCEEEEEecCH
Confidence 2332 455555554 45799999999854
No 348
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.23 E-value=1.1e-05 Score=80.82 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=41.0
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+.+.|+++++ .+.+||+++|-.. .+...
T Consensus 421 ~p~lLlLDEPt~gLD~--------~~~----~~l~~~l~~l~~-~g~tiIivsHd~~------------------~i~~~ 469 (510)
T PRK15439 421 SPQLLIVDEPTRGVDV--------SAR----NDIYQLIRSIAA-QNVAVLFISSDLE------------------EIEQM 469 (510)
T ss_pred CCCEEEECCCCcCcCh--------hHH----HHHHHHHHHHHh-CCCEEEEECCCHH------------------HHHHh
Confidence 7899999998877532 222 266677777776 4899999999654 13556
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 470 ~d~i~~l~~ 478 (510)
T PRK15439 470 ADRVLVMHQ 478 (510)
T ss_pred CCEEEEEEC
Confidence 777777764
No 349
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.22 E-value=3e-05 Score=70.81 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=24.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 46 ~i~~Ge~~~liG~NGsGKSTLlk~L~G 72 (264)
T PRK13546 46 KAYEGDVIGLVGINGSGKSTLSNIIGG 72 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999996654
No 350
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=1e-05 Score=73.69 Aligned_cols=59 Identities=7% Similarity=0.100 Sum_probs=41.5
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|+.++-+.. ..+ ..+...|+.++++.+.+||+++|-.. .+...
T Consensus 168 ~p~vllLDEP~~~LD~--------~~~----~~l~~~l~~l~~~~~~tiiivsH~~~------------------~i~~~ 217 (261)
T PRK14258 168 KPKVLLMDEPCFGLDP--------IAS----MKVESLIQSLRLRSELTMVIVSHNLH------------------QVSRL 217 (261)
T ss_pred CCCEEEEeCCCccCCH--------HHH----HHHHHHHHHHHHhCCCEEEEEECCHH------------------HHHHh
Confidence 7899999998876432 222 26677778877666899999988654 13556
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.+..
T Consensus 218 ~d~i~~l~~ 226 (261)
T PRK14258 218 SDFTAFFKG 226 (261)
T ss_pred cCEEEEEcc
Confidence 677777764
No 351
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=1.3e-05 Score=72.56 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=24.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|+|||||+..++..
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 25 EIPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999999977654
No 352
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.21 E-value=2.8e-05 Score=76.78 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=24.8
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
--+++|+++.|.|++|+|||||+..++.
T Consensus 45 fsI~~GEivgIiGpNGSGKSTLLkiLaG 72 (549)
T PRK13545 45 FEVPEGEIVGIIGLNGSGKSTLSNLIAG 72 (549)
T ss_pred EEEeCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 3688999999999999999999997654
No 353
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.20 E-value=1.7e-05 Score=64.37 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=32.7
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~ 171 (352)
.+..+.|.|+||+|||+++..++..... .+..++|++....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~------~~~~v~~~~~~~~ 58 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFR------PGAPFLYLNASDL 58 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhc------CCCCeEEEehhhh
Confidence 4668999999999999999988876543 4667888877543
No 354
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.19 E-value=1.6e-05 Score=80.30 Aligned_cols=27 Identities=33% Similarity=0.336 Sum_probs=24.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+.+.|+|++|||||||+.-++.
T Consensus 345 ~i~~G~~~aivG~sGsGKSTL~~ll~g 371 (547)
T PRK10522 345 TIKRGELLFLIGGNGSGKSTLAMLLTG 371 (547)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999986654
No 355
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.19 E-value=4.2e-06 Score=75.88 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=24.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 28 SIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999999997764
No 356
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.18 E-value=7.1e-06 Score=83.21 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=24.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
=+++|+.+.|+|++|||||||+.-++..
T Consensus 337 ~i~~G~~~~ivG~sGsGKSTLl~ll~g~ 364 (569)
T PRK10789 337 TLKPGQMLGICGPTGSGKSTLLSLIQRH 364 (569)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999999966543
No 357
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.18 E-value=0.0001 Score=69.79 Aligned_cols=144 Identities=15% Similarity=0.049 Sum_probs=79.4
Q ss_pred HhhhCCCHHHHHHHHHHHHHHhhcCC-CchhhhHHhhhcccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHH
Q 047388 67 TGIKGLSEAKVEKICEAAEKIVNFGY-ITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHT 145 (352)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~ 145 (352)
....|+++.-+.++++.+.+.++..- .+..+++.... ..++.-++.-+. ..+.+|.++.|+||+|+||||++..
T Consensus 151 L~~~gV~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~--~~L~~~l~~~~~---~~~~~~~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 151 LKGRGISDTYVADFMQAGRKQFKQVETAHLDDITDWFV--PYLSGKLAVEDS---FDLSNHRIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred HHHcCCCHHHHHHHHHHHHHhccccccccHHHHHHHHH--HHhcCcEeeCCC---ceecCCeEEEEECCCCCCHHHHHHH
Confidence 33457777667777766655532211 12222222111 112221111111 1245689999999999999999999
Q ss_pred HHHHhcCCCccCCCCCeEEEEeCCCCCC--hhhHHHHHHHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCce
Q 047388 146 LCVCTQLPTNMRGGNGKVAYIDTEGTFR--PDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFR 223 (352)
Q Consensus 146 la~~~~~~~~~gg~~~~vl~i~~e~~~~--~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 223 (352)
+|..... .+.+|.++++..-.. .+.++..++..++. +....+..++...+..+. ...+.+
T Consensus 226 LA~~l~~------~g~~V~lItaDtyR~gAveQLk~yae~lgvp---------v~~~~dp~dL~~al~~l~---~~~~~D 287 (407)
T PRK12726 226 LGWQLLK------QNRTVGFITTDTFRSGAVEQFQGYADKLDVE---------LIVATSPAELEEAVQYMT---YVNCVD 287 (407)
T ss_pred HHHHHHH------cCCeEEEEeCCccCccHHHHHHHHhhcCCCC---------EEecCCHHHHHHHHHHHH---hcCCCC
Confidence 9877644 567899998874322 23444444444432 222344555444333221 123579
Q ss_pred EEEEcccccc
Q 047388 224 LLIVDSVIAL 233 (352)
Q Consensus 224 lvvIDsl~~l 233 (352)
+|+||.....
T Consensus 288 ~VLIDTAGr~ 297 (407)
T PRK12726 288 HILIDTVGRN 297 (407)
T ss_pred EEEEECCCCC
Confidence 9999987765
No 358
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.18 E-value=7.9e-06 Score=82.41 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=24.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
=+++|+.+.|+|++|||||||+.-++..
T Consensus 340 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 367 (544)
T TIGR01842 340 RLQAGEALAIIGPSGSGKSTLARLIVGI 367 (544)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999966543
No 359
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.17 E-value=4.9e-05 Score=76.88 Aligned_cols=46 Identities=22% Similarity=0.161 Sum_probs=32.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCC----CCCeEEEEeCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRG----GNGKVAYIDTE 169 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg----~~~~vl~i~~e 169 (352)
-+++|+++.|.|++|||||||+..++. ..++..|. .+..+.|+.-+
T Consensus 29 ~i~~Ge~~~iiG~NGsGKSTLlk~i~G--~~~p~~G~i~~~~~~~i~~v~Q~ 78 (556)
T PRK11819 29 SFFPGAKIGVLGLNGAGKSTLLRIMAG--VDKEFEGEARPAPGIKVGYLPQE 78 (556)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCceEEecCCCEEEEEecC
Confidence 578999999999999999999996653 33333332 12345666544
No 360
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.17 E-value=1.7e-05 Score=71.94 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=25.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|+|||||+..++..
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 28 EFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999999977654
No 361
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.17 E-value=5.6e-06 Score=86.06 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+.+.|+|++|+|||||+.-++..
T Consensus 503 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 503 TLHPGEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 5789999999999999999999976543
No 362
>PRK13409 putative ATPase RIL; Provisional
Probab=98.17 E-value=2.2e-05 Score=79.59 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=23.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
=+++|+++.|.|++|+|||||+..++.
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G 121 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSG 121 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999996553
No 363
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.17 E-value=7.9e-06 Score=82.94 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=24.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
=+++|+.+.|+|++|+|||||+.-++..
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999999966543
No 364
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=1.4e-05 Score=80.16 Aligned_cols=41 Identities=24% Similarity=0.288 Sum_probs=29.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
-++||+++.++||||+||||++.-+ .+.-.| .. +.+.+|..
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL-~rfY~P-----ts-G~IllDG~ 530 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLL-LRFYDP-----TS-GRILLDGV 530 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHH-HHhcCC-----CC-CeEEECCe
Confidence 5899999999999999999999744 343333 33 34455554
No 365
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.16 E-value=2.7e-05 Score=74.25 Aligned_cols=139 Identities=16% Similarity=0.153 Sum_probs=76.7
Q ss_pred cCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCC-C----CCeEEEEeCCCCCChhhHHHHHHHcCCCccccccc
Q 047388 120 GGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRG-G----NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDN 194 (352)
Q Consensus 120 ~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg-~----~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~ 194 (352)
+|.|..|+++.+.||+|.|||||+..+|.. .. ++.|. . ..+--||..+-..+...+...+.+-.+....+..
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~-ik-Pdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~- 437 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGV-IK-PDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKT- 437 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhcc-cc-CCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHH-
Confidence 478999999999999999999999966543 33 23332 1 1233456555332222222111111111100000
Q ss_pred EEEEecCCHHHHHHH---------HHHHH-HHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHH
Q 047388 195 IIYARAYTYEHQYNL---------LLGLA-AKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEE 264 (352)
Q Consensus 195 i~~~~~~~~~~~~~~---------l~~l~-~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~ 264 (352)
.+..+.+.+.+++. +.++. ...-....++.++|+.++++. ..+|. .+.+.+++++..
T Consensus 438 -ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LD--------vEqR~----~vakvIRR~~e~ 504 (591)
T COG1245 438 -EIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLD--------VEQRI----IVAKVIRRFIEN 504 (591)
T ss_pred -hhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhcc--------HHHHH----HHHHHHHHHHhh
Confidence 01122222222110 11111 111123679999999999863 34553 667788999999
Q ss_pred hCcEEEEEcc
Q 047388 265 FNVAVYMTNQ 274 (352)
Q Consensus 265 ~~~~viv~~h 274 (352)
.+.+.+++-|
T Consensus 505 ~~kta~vVdH 514 (591)
T COG1245 505 NEKTALVVDH 514 (591)
T ss_pred cCceEEEEec
Confidence 9999999998
No 366
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.16 E-value=5.5e-06 Score=75.05 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=24.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
=+++|+++.|+|++|||||||+..++..
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 26 DFPENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999999977654
No 367
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.16 E-value=8.2e-06 Score=90.59 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=25.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQ 151 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~ 151 (352)
=+++|+.+.|+|++||||||++.-++....
T Consensus 1190 ~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd 1219 (1466)
T PTZ00265 1190 SCDSKKTTAIVGETGSGKSTVMSLLMRFYD 1219 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 588999999999999999999986665433
No 368
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.16 E-value=1.7e-05 Score=78.91 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=24.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|||||||+..++.
T Consensus 282 ~i~~Ge~~~i~G~NGsGKSTLl~~l~G 308 (490)
T PRK10938 282 QVNPGEHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999999997765
No 369
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.15 E-value=2.6e-05 Score=71.07 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 56 (261)
T PRK14263 30 PIRKNEITGFIGPSGCGKSTVLRSLNR 56 (261)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999999996654
No 370
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.15 E-value=7.8e-06 Score=73.95 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=25.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|+|||||+..++..
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 25 DIPKNSVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999999987754
No 371
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.15 E-value=5.9e-06 Score=74.84 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=24.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|+|||||+..++..
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 27 DFYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999999977643
No 372
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.15 E-value=6.2e-06 Score=75.64 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=25.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
=+++|+++.|.|++|+|||||+..++...
T Consensus 46 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 46 DIHENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999999777543
No 373
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.14 E-value=2.2e-05 Score=71.42 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=24.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 34 QIPKNSVTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999999997764
No 374
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.14 E-value=8.2e-06 Score=82.97 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+.+.|+|++|+|||||+.-++.
T Consensus 357 ~i~~G~~~~ivG~sGsGKSTL~~ll~g 383 (585)
T TIGR01192 357 EAKAGQTVAIVGPTGAGKTTLINLLQR 383 (585)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcc
Confidence 478999999999999999999996654
No 375
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.14 E-value=1.7e-05 Score=89.50 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=25.5
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
=++++|+++.|.|++|+||||++..++..
T Consensus 1960 f~I~~GEi~gLLG~NGAGKTTLlkmL~Gl 1988 (2272)
T TIGR01257 1960 VGVRPGECFGLLGVNGAGKTTTFKMLTGD 1988 (2272)
T ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHhCC
Confidence 37899999999999999999999966543
No 376
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.14 E-value=3.3e-05 Score=70.94 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=24.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
=+++|+++.|.|++|+|||||+..++..
T Consensus 42 ~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 42 KIPAKKIIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4689999999999999999999976543
No 377
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.14 E-value=6.7e-06 Score=74.42 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=24.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
=+.+|+++.|.|++|+|||||+..++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 25 EIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 478999999999999999999997764
No 378
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.13 E-value=3.2e-05 Score=76.95 Aligned_cols=133 Identities=20% Similarity=0.216 Sum_probs=77.9
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccC----CCCCeEEEEeCCCCC--C----------------hhhHH
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMR----GGNGKVAYIDTEGTF--R----------------PDRIV 178 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~g----g~~~~vl~i~~e~~~--~----------------~~rl~ 178 (352)
-.+.+|+-+.|.||+|+|||||+..++..... ..| |.+-++-||+-+..- . ...++
T Consensus 343 ~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~--~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r 420 (530)
T COG0488 343 FRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP--LSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVR 420 (530)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhhhccc--CCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHH
Confidence 47899999999999999999999977543322 223 345678898865421 1 12233
Q ss_pred HHHHHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHH
Q 047388 179 PIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRL 258 (352)
Q Consensus 179 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L 258 (352)
..+.+|++..+.+...+ ...+..+...+. +. .+.-.++.++|+|+++..+. +. -...|
T Consensus 421 ~~L~~f~F~~~~~~~~v---~~LSGGEk~Rl~--La-~ll~~~pNvLiLDEPTNhLD--------i~--------s~~aL 478 (530)
T COG0488 421 AYLGRFGFTGEDQEKPV---GVLSGGEKARLL--LA-KLLLQPPNLLLLDEPTNHLD--------IE--------SLEAL 478 (530)
T ss_pred HHHHHcCCChHHHhCch---hhcCHhHHHHHH--HH-HHhccCCCEEEEcCCCccCC--------HH--------HHHHH
Confidence 33344444443222211 112222222211 11 12224899999999998853 22 22334
Q ss_pred HHHHHHhCcEEEEEccccc
Q 047388 259 TKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 259 ~~la~~~~~~viv~~h~~~ 277 (352)
......|.=+||+|+|=..
T Consensus 479 e~aL~~f~Gtvl~VSHDr~ 497 (530)
T COG0488 479 EEALLDFEGTVLLVSHDRY 497 (530)
T ss_pred HHHHHhCCCeEEEEeCCHH
Confidence 5555678889999999654
No 379
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.13 E-value=1.5e-05 Score=88.61 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=25.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|+|++|||||||+..++..
T Consensus 407 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl 434 (1466)
T PTZ00265 407 TLTEGKTYAFVGESGCGKSTILKLIERL 434 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999999976654
No 380
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.13 E-value=4.4e-06 Score=73.15 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=23.4
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhc
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQ 151 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~ 151 (352)
.|++++|+||+|+|||||+..++....
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~~~~ 54 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLAVL 54 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHHH
Confidence 359999999999999999999985543
No 381
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.13 E-value=4.9e-06 Score=75.66 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=24.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|+|||||+..++..
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 43 YIKPGQKVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999999999977653
No 382
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.12 E-value=7.8e-06 Score=74.80 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=25.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.+|+++.|.|++|+|||||+..++..
T Consensus 42 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 42 QFEKNKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999999977654
No 383
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.12 E-value=0.00018 Score=64.75 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=39.3
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhh
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAH 299 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~ 299 (352)
.+++++++|+.++.+.+ .. ...+...|+++++ +.++|+++|... ...
T Consensus 179 ~~~~illlDEp~~~ld~--------~~----~~~~~~~l~~~~~--~~~ii~~~h~~~-------------------~~~ 225 (243)
T cd03272 179 DPAPFYLFDEIDAALDA--------QY----RTAVANMIKELSD--GAQFITTTFRPE-------------------LLE 225 (243)
T ss_pred CCCCEEEEECCccCCCH--------HH----HHHHHHHHHHHhC--CCEEEEEecCHH-------------------HHh
Confidence 35899999998876532 11 1256666777654 788888888632 234
Q ss_pred ccceEEEEEeecC
Q 047388 300 AVTIRLMFRKGKG 312 (352)
Q Consensus 300 ~~~~~i~L~~~~~ 312 (352)
.+|.++.|....+
T Consensus 226 ~~d~i~~l~~~~~ 238 (243)
T cd03272 226 VADKFYGVKFRNK 238 (243)
T ss_pred hCCEEEEEEEECC
Confidence 6777777776443
No 384
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.1e-05 Score=78.32 Aligned_cols=135 Identities=18% Similarity=0.237 Sum_probs=79.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC-CChhhHHH----HHHHcCCCcccccccEE
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT-FRPDRIVP----IAERFGMDPGAVLDNII 196 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~-~~~~rl~~----~~~~~~~~~~~~~~~i~ 196 (352)
-+.+|+-+.|.|++||||||++..++.+... ..+.+.+=..+.. .+++.+++ +.++..+...++.+|+.
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~------~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~ 433 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTLLQLLAGAWDP------QQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLR 433 (573)
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHHhccCC------CCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHh
Confidence 5789999999999999999999977765544 4455544333321 22222222 22333333345667776
Q ss_pred EEecC-CHHHHHHHHHHH--H--------------------------------HHhhcCCceEEEEcccccchhcccCCC
Q 047388 197 YARAY-TYEHQYNLLLGL--A--------------------------------AKMSEEPFRLLIVDSVIALFRVDFTGR 241 (352)
Q Consensus 197 ~~~~~-~~~~~~~~l~~l--~--------------------------------~~l~~~~~~lvvIDsl~~l~~~~~~~~ 241 (352)
..... +.+++.+.++++ . +.+- ++..++++|+.+.-..+
T Consensus 434 lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL-~dapl~lLDEPTegLD~----- 507 (573)
T COG4987 434 LANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALL-HDAPLWLLDEPTEGLDP----- 507 (573)
T ss_pred hcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHH-cCCCeEEecCCcccCCh-----
Confidence 65543 223333333221 0 1111 26789999998876432
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 242 GELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 242 g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
..+| +++..|..-++ +.|+++++|--.
T Consensus 508 --~TE~-----~vL~ll~~~~~--~kTll~vTHrL~ 534 (573)
T COG4987 508 --ITER-----QVLALLFEHAE--GKTLLMVTHRLR 534 (573)
T ss_pred --hhHH-----HHHHHHHHHhc--CCeEEEEecccc
Confidence 3444 56666665554 789998888665
No 385
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.12 E-value=5.8e-05 Score=65.71 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=57.0
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCC---hhhHHHHHHHcCCCcccccccEEEEecCCH
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFR---PDRIVPIAERFGMDPGAVLDNIIYARAYTY 203 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~---~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 203 (352)
.++.++||+|+||||.+-.+|..... .+.+|.+++++. ++ .+.++..++.++++ +......
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~------~~~~v~lis~D~-~R~ga~eQL~~~a~~l~vp---------~~~~~~~ 65 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKL------KGKKVALISADT-YRIGAVEQLKTYAEILGVP---------FYVARTE 65 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH------TT--EEEEEEST-SSTHHHHHHHHHHHHHTEE---------EEESSTT
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhh------ccccceeecCCC-CCccHHHHHHHHHHHhccc---------cchhhcc
Confidence 37899999999999999999988776 578899998764 33 24456666666543 2222222
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccccc
Q 047388 204 EHQYNLLLGLAAKMSEEPFRLLIVDSVIAL 233 (352)
Q Consensus 204 ~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l 233 (352)
.+..+.+.+..+.....+.++|+||.....
T Consensus 66 ~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~ 95 (196)
T PF00448_consen 66 SDPAEIAREALEKFRKKGYDLVLIDTAGRS 95 (196)
T ss_dssp SCHHHHHHHHHHHHHHTTSSEEEEEE-SSS
T ss_pred hhhHHHHHHHHHHHhhcCCCEEEEecCCcc
Confidence 222223333333344557899999986544
No 386
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.12 E-value=1.1e-05 Score=73.06 Aligned_cols=28 Identities=21% Similarity=0.270 Sum_probs=25.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.+|+++.|.|++|+|||||+..++..
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 26 DFEEKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4789999999999999999999977654
No 387
>PRK14974 cell division protein FtsY; Provisional
Probab=98.11 E-value=0.0005 Score=64.72 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=55.3
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCCh---hhHHHHHHHcCCCcccccccEEEEecCC
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRP---DRIVPIAERFGMDPGAVLDNIIYARAYT 202 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~---~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 202 (352)
..++.++|++|+||||++..++..... .+.+|+++++.. +.. ++++..++.+++.... .....+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~------~g~~V~li~~Dt-~R~~a~eqL~~~a~~lgv~v~~------~~~g~d 206 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKK------NGFSVVIAAGDT-FRAGAIEQLEEHAERLGVKVIK------HKYGAD 206 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH------cCCeEEEecCCc-CcHHHHHHHHHHHHHcCCceec------ccCCCC
Confidence 579999999999999999988876543 466888887653 332 3455556666543210 001112
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEcccccc
Q 047388 203 YEHQYNLLLGLAAKMSEEPFRLLIVDSVIAL 233 (352)
Q Consensus 203 ~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l 233 (352)
+. ..+....+.....+.++|+||....+
T Consensus 207 p~---~v~~~ai~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 207 PA---AVAYDAIEHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HH---HHHHHHHHHHHhCCCCEEEEECCCcc
Confidence 21 11222222223346789999988665
No 388
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.11 E-value=8.2e-06 Score=76.14 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=24.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.+|+++.|+|++|+|||||+..++..
T Consensus 67 ~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl 94 (305)
T PRK14264 67 DIPEKSVTALIGPSGCGKSTFLRCLNRM 94 (305)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4779999999999999999999977654
No 389
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.10 E-value=5.8e-05 Score=61.69 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=25.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQ 151 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~ 151 (352)
-+-+|+|+.|.||||||||||+..++....
T Consensus 24 Tia~GeivtlMGPSGcGKSTLls~~~G~La 53 (213)
T COG4136 24 TIAKGEIVTLMGPSGCGKSTLLSWMIGALA 53 (213)
T ss_pred EecCCcEEEEECCCCccHHHHHHHHHhhcc
Confidence 467899999999999999999987665544
No 390
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.10 E-value=4.8e-06 Score=75.44 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=24.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.+|+++.|.|++|+|||||+..++..
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 26 DVQRGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999999976553
No 391
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.10 E-value=9.4e-06 Score=73.84 Aligned_cols=28 Identities=29% Similarity=0.288 Sum_probs=24.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
=+.+|+++.|.|++|+|||||+..++..
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~iaG~ 59 (257)
T PRK14246 32 KIPNNSIFGIMGPSGSGKSTLLKVLNRL 59 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999999976643
No 392
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.10 E-value=1.2e-05 Score=83.36 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=24.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+.+.|+|++|||||||+.-++..
T Consensus 479 ~i~~G~~vaivG~sGsGKSTL~~ll~g~ 506 (694)
T TIGR01846 479 DIKPGEFIGIVGPSGSGKSTLTKLLQRL 506 (694)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999999966544
No 393
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.10 E-value=3.4e-05 Score=79.17 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=32.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCC----CCCeEEEEeCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRG----GNGKVAYIDTE 169 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg----~~~~vl~i~~e 169 (352)
-+.+|+++.|+||+|||||||+..++. ..++..|. .+.++.|+...
T Consensus 334 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G--~~~p~~G~i~~~~~~~igy~~Q~ 383 (638)
T PRK10636 334 NLVPGSRIGLLGRNGAGKSTLIKLLAG--ELAPVSGEIGLAKGIKLGYFAQH 383 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCCeEEECCCEEEEEecCc
Confidence 578999999999999999999997664 33333332 12346666543
No 394
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.10 E-value=8.2e-06 Score=73.82 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=24.7
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
--+++|+++.|.|++|+|||||+..++.
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 24 MKIFKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred EeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999999999997664
No 395
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.10 E-value=9.9e-05 Score=75.83 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|+|++|||||||+..++.
T Consensus 25 ~i~~Ge~v~LvG~NGsGKSTLLriiaG 51 (635)
T PRK11147 25 HIEDNERVCLVGRNGAGKSTLMKILNG 51 (635)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 578999999999999999999996654
No 396
>PLN03130 ABC transporter C family member; Provisional
Probab=98.10 E-value=1.1e-05 Score=90.58 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=75.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcc-------ccccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG-------AVLDN 194 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~-------~~~~~ 194 (352)
-+++|+.+.|+|++|||||||+..++.-... ..+.++||..+- ..-.+..+.+++++-++ ++.+|
T Consensus 1261 ~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p-------~~G~I~IDG~dI-~~i~l~~LR~~IsiVpQdp~LF~GTIreN 1332 (1622)
T PLN03130 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVEL-------ERGRILIDGCDI-SKFGLMDLRKVLGIIPQAPVLFSGTVRFN 1332 (1622)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCCC-------CCceEEECCEec-ccCCHHHHHhccEEECCCCccccccHHHH
Confidence 5789999999999999999999966543222 334567776532 22223333344443332 34455
Q ss_pred EEEEecCCHHHHHHHHH-----------------------------------HHHHHhhcCCceEEEEcccccchhcccC
Q 047388 195 IIYARAYTYEHQYNLLL-----------------------------------GLAAKMSEEPFRLLIVDSVIALFRVDFT 239 (352)
Q Consensus 195 i~~~~~~~~~~~~~~l~-----------------------------------~l~~~l~~~~~~lvvIDsl~~l~~~~~~ 239 (352)
+......+.++..+.++ -.+..+ .+++++|+|+.++-...
T Consensus 1333 Ld~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALL--r~p~ILILDEATSaLD~--- 1407 (1622)
T PLN03130 1333 LDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALL--RRSKILVLDEATAAVDV--- 1407 (1622)
T ss_pred hCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHH--cCCCEEEEECCCCCCCH---
Confidence 54443333333332222 111122 26899999999887532
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 240 GRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 240 ~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
..+ ..+.+.|++.. .++|||+++|-.
T Consensus 1408 ----~Te-----~~Iq~~I~~~~--~~~TvI~IAHRL 1433 (1622)
T PLN03130 1408 ----RTD-----ALIQKTIREEF--KSCTMLIIAHRL 1433 (1622)
T ss_pred ----HHH-----HHHHHHHHHHC--CCCEEEEEeCCh
Confidence 122 14445555543 379999999943
No 397
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.09 E-value=1e-05 Score=74.08 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=25.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.+|+++.|.|++|+|||||+..++..
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 43 DIEKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999999977653
No 398
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.09 E-value=1e-05 Score=73.94 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=24.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|+|||||+..++..
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 32 DIPKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999999977653
No 399
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.09 E-value=2e-05 Score=79.91 Aligned_cols=132 Identities=20% Similarity=0.241 Sum_probs=72.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCc-------cccccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDP-------GAVLDN 194 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~-------~~~~~~ 194 (352)
-+++|+.+.|+|++||||||++.-++...-. ..| .+++|..+- ..-......++.++-+ .++.+|
T Consensus 351 ~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~------~~G-~I~idg~dI-~~i~~~~lr~~I~~V~Qd~~LF~~TI~~N 422 (567)
T COG1132 351 SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP------TSG-EILIDGIDI-RDISLDSLRKRIGIVSQDPLLFSGTIREN 422 (567)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCC------CCC-eEEECCEeh-hhcCHHHHHHhccEEcccceeecccHHHH
Confidence 4899999999999999999999966543322 334 445554321 1111222333344322 345667
Q ss_pred EEEEecC-CHHHHHHHHHHH--H--------------------------------HHhhcCCceEEEEcccccchhcccC
Q 047388 195 IIYARAY-TYEHQYNLLLGL--A--------------------------------AKMSEEPFRLLIVDSVIALFRVDFT 239 (352)
Q Consensus 195 i~~~~~~-~~~~~~~~l~~l--~--------------------------------~~l~~~~~~lvvIDsl~~l~~~~~~ 239 (352)
+.+.+.. +.++..+.++.. . +.+ -.+++++|+|+.++-...+
T Consensus 423 I~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARal-l~~~~ILILDEaTSalD~~-- 499 (567)
T COG1132 423 IALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARAL-LRNPPILILDEATSALDTE-- 499 (567)
T ss_pred HhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHH-hcCCCEEEEeccccccCHH--
Confidence 7766542 333333322211 0 111 1267899999988775321
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 240 GRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 240 ~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.+ ..+.+.+.++.+ +.|+++++|--
T Consensus 500 -----tE-----~~I~~~l~~l~~--~rT~iiIaHRl 524 (567)
T COG1132 500 -----TE-----ALIQDALKKLLK--GRTTLIIAHRL 524 (567)
T ss_pred -----hH-----HHHHHHHHHHhc--CCEEEEEeccH
Confidence 22 255566665553 34677677743
No 400
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.09 E-value=5.3e-05 Score=70.04 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=25.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.+|+++.|.|++|+|||||+..++..
T Consensus 61 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 61 DILSKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999999977653
No 401
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.09 E-value=7.2e-06 Score=75.54 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 59 ~i~~Ge~~~liG~NGsGKSTLl~~I~G 85 (282)
T cd03291 59 KIEKGEMLAITGSTGSGKTSLLMLILG 85 (282)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999996654
No 402
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.09 E-value=3.7e-05 Score=70.19 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=24.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
=+.+|+++.|+|++|+|||||+..++..
T Consensus 38 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 38 MVHEKQVTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3789999999999999999999977543
No 403
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.09 E-value=3e-05 Score=71.10 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=25.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|+|||||+..++..
T Consensus 47 ~i~~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 47 RIPKNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 5789999999999999999999977653
No 404
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.09 E-value=1.9e-05 Score=76.08 Aligned_cols=121 Identities=17% Similarity=0.240 Sum_probs=66.7
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEec
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARA 200 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 200 (352)
-|++++.-+.|+||||+|||+++..+|.... ...+.+... . ....+ +.
T Consensus 174 ~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~---------~~fi~i~~s-----~----l~~k~------------~g-- 221 (398)
T PTZ00454 174 IGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT---------ATFIRVVGS-----E----FVQKY------------LG-- 221 (398)
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHhcC---------CCEEEEehH-----H----HHHHh------------cc--
Confidence 4788888999999999999999998876532 222222211 0 11110 00
Q ss_pred CCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCC-cchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 201 YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGR-GELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 201 ~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~-g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+....+..+........+.+|+||++..+........ +.-.+-++.+.+++..+..+....++.||++++-..
T Consensus 222 ----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 222 ----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred ----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence 0011122232333445789999999998865432211 111122233455555555444455777887766443
No 405
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.09 E-value=1.1e-05 Score=73.48 Aligned_cols=28 Identities=25% Similarity=0.289 Sum_probs=25.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.+|+++.|.|++|+|||||+..++..
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 29 DIYRNKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4779999999999999999999977754
No 406
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.09 E-value=8.7e-05 Score=75.03 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=24.7
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
--|++|+++.|.|++|+|||||+..++.
T Consensus 26 ~~i~~Ge~~~liG~NGsGKSTLl~~i~G 53 (552)
T TIGR03719 26 LSFFPGAKIGVLGLNGAGKSTLLRIMAG 53 (552)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999999996654
No 407
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.08 E-value=1.5e-05 Score=81.20 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=28.2
Q ss_pred cCCCCCCcEEEEecCCCCChhHHHHHHHHHhc
Q 047388 120 GGGIETGAITEAFGEFRSGKTQLAHTLCVCTQ 151 (352)
Q Consensus 120 ~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~ 151 (352)
.|=+++|+++.|.||+|+|||||+..++....
T Consensus 50 sg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~ 81 (613)
T KOG0061|consen 50 SGTAKPGELLAIMGPSGSGKTTLLNALAGRLN 81 (613)
T ss_pred EEEEecCeEEEEECCCCCCHHHHHHHHhcccc
Confidence 37899999999999999999999998776544
No 408
>PLN03073 ABC transporter F family; Provisional
Probab=98.08 E-value=5.5e-05 Score=78.40 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=32.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhc--CCCccCCCCCeEEEEeCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQ--LPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~--~~~~~gg~~~~vl~i~~e 169 (352)
-+.+|+.+.|+|++|||||||+..++.... .| .++.+.|+..+
T Consensus 199 ~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p-----~~g~I~~~~Q~ 243 (718)
T PLN03073 199 TLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIP-----KNCQILHVEQE 243 (718)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC-----CCCEEEEEecc
Confidence 488999999999999999999997764211 22 45678887654
No 409
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.08 E-value=7.1e-05 Score=65.25 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.2
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
+++| ++.|.||+|+|||||+..++..
T Consensus 20 ~~~g-~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 20 FPPG-LTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 5678 9999999999999999876543
No 410
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.08 E-value=4.5e-05 Score=78.33 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=24.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+.+|+++.|.|++|||||||+..++.
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G 367 (635)
T PRK11147 341 QVQRGDKIALIGPNGCGKTTLLKLMLG 367 (635)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 478999999999999999999997664
No 411
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.08 E-value=2.1e-05 Score=72.67 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=24.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-|.+|+++.|.|++|+|||||+..++..
T Consensus 61 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 61 DIPENQVTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999999977644
No 412
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.07 E-value=4.2e-05 Score=69.54 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=25.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.|++|+|||||+..++..
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 26 NIEPRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999999977654
No 413
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.07 E-value=3.5e-05 Score=63.66 Aligned_cols=135 Identities=18% Similarity=0.172 Sum_probs=74.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeC-----CCCCChhhHHHHHHHcCCCcc-------
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDT-----EGTFRPDRIVPIAERFGMDPG------- 189 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~-----e~~~~~~rl~~~~~~~~~~~~------- 189 (352)
-.+.|+.+++.||+|+|||+|+..+ |.+..+. .+.+-|.. ........++...+..|+-.+
T Consensus 24 ~~~~getlvllgpsgagkssllr~l--nlle~p~-----sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwph 96 (242)
T COG4161 24 DCPEGETLVLLGPSGAGKSSLLRVL--NLLEMPR-----SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPH 96 (242)
T ss_pred cCCCCCEEEEECCCCCchHHHHHHH--HHHhCCC-----CCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCch
Confidence 4688999999999999999999844 5444322 22333322 222223445555555555432
Q ss_pred -cccccEEEEe-----cCCH---HHHHHHHHHHH--H-----------------Hhh---cCCceEEEEcccccchhccc
Q 047388 190 -AVLDNIIYAR-----AYTY---EHQYNLLLGLA--A-----------------KMS---EEPFRLLIVDSVIALFRVDF 238 (352)
Q Consensus 190 -~~~~~i~~~~-----~~~~---~~~~~~l~~l~--~-----------------~l~---~~~~~lvvIDsl~~l~~~~~ 238 (352)
.+.+|+.-.. .... .+..+++.+++ . .+. -.+|.++.+|+.++.+.++.
T Consensus 97 ltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpei 176 (242)
T COG4161 97 LTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176 (242)
T ss_pred hHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHH
Confidence 2223321111 0000 11122222221 0 000 12789999999988865432
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 239 TGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 239 ~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
..+++..+++++. .|++-++++|-.
T Consensus 177 ------------taqvv~iikel~~-tgitqvivthev 201 (242)
T COG4161 177 ------------TAQIVSIIKELAE-TGITQVIVTHEV 201 (242)
T ss_pred ------------HHHHHHHHHHHHh-cCceEEEEEeeh
Confidence 2467777888865 699988877743
No 414
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=2.2e-05 Score=76.38 Aligned_cols=131 Identities=18% Similarity=0.201 Sum_probs=77.6
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcc-------cccc
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG-------AVLD 193 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~-------~~~~ 193 (352)
.-+|+|+-+.|+|+|||||||++..+..-.- ..+-++||+-+- ..-+.....+..|+.|+ +++.
T Consensus 373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~d--------~sG~I~IdG~di-k~~~~~SlR~~Ig~VPQd~~LFndTIl~ 443 (591)
T KOG0057|consen 373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--------YSGSILIDGQDI-KEVSLESLRQSIGVVPQDSVLFNDTILY 443 (591)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHHhc--------cCCcEEECCeeH-hhhChHHhhhheeEeCCcccccchhHHH
Confidence 3689999999999999999999997765422 234567776542 12223333334455443 4566
Q ss_pred cEEEEecCCH-HHHHHH-----------------------------------HHHHHHHhhcCCceEEEEcccccchhcc
Q 047388 194 NIIYARAYTY-EHQYNL-----------------------------------LLGLAAKMSEEPFRLLIVDSVIALFRVD 237 (352)
Q Consensus 194 ~i~~~~~~~~-~~~~~~-----------------------------------l~~l~~~l~~~~~~lvvIDsl~~l~~~~ 237 (352)
|+.+....-. ++..+. +.-++..+ .++.+++.|+.++-+..
T Consensus 444 NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~l--Kda~Il~~DEaTS~LD~- 520 (591)
T KOG0057|consen 444 NIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFL--KDAPILLLDEATSALDS- 520 (591)
T ss_pred HhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHh--cCCCeEEecCcccccch-
Confidence 6666543322 111111 11111111 26789999999887542
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 238 FTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 238 ~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
-.++ ++++.+.. ..-+.|+|++.|-.
T Consensus 521 ------~TE~-----~i~~~i~~--~~~~rTvI~IvH~l 546 (591)
T KOG0057|consen 521 ------ETER-----EILDMIMD--VMSGRTVIMIVHRL 546 (591)
T ss_pred ------hhHH-----HHHHHHHH--hcCCCeEEEEEecc
Confidence 2343 66666666 34578999888844
No 415
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.07 E-value=5.2e-05 Score=76.26 Aligned_cols=27 Identities=37% Similarity=0.368 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G 367 (530)
T PRK15064 341 LLEAGERLAIIGENGVGKTTLLRTLVG 367 (530)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999997653
No 416
>PLN03232 ABC transporter C family member; Provisional
Probab=98.07 E-value=1.3e-05 Score=89.64 Aligned_cols=131 Identities=13% Similarity=0.088 Sum_probs=73.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcc-------ccccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG-------AVLDN 194 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~-------~~~~~ 194 (352)
-+++|+.+.|+|++|||||||+..+..... | ..+.++||..+- ..-.+..+.+++++-++ ++.+|
T Consensus 1258 ~I~~GekvaIVG~SGSGKSTL~~lL~rl~~-p------~~G~I~IdG~di-~~i~~~~lR~~i~iVpQdp~LF~gTIr~N 1329 (1495)
T PLN03232 1258 FVSPSEKVGVVGRTGAGKSSMLNALFRIVE-L------EKGRIMIDDCDV-AKFGLTDLRRVLSIIPQSPVLFSGTVRFN 1329 (1495)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCc-C------CCceEEECCEEh-hhCCHHHHHhhcEEECCCCeeeCccHHHH
Confidence 478999999999999999999996654322 2 234466666432 11122333344443332 34455
Q ss_pred EEEEecCCHHHHHHHHH-----------------------------------HHHHHhhcCCceEEEEcccccchhcccC
Q 047388 195 IIYARAYTYEHQYNLLL-----------------------------------GLAAKMSEEPFRLLIVDSVIALFRVDFT 239 (352)
Q Consensus 195 i~~~~~~~~~~~~~~l~-----------------------------------~l~~~l~~~~~~lvvIDsl~~l~~~~~~ 239 (352)
+......+.++..+.++ -.+..+ .+++++|+|+.++-...
T Consensus 1330 L~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALL--r~~~ILILDEATSaLD~--- 1404 (1495)
T PLN03232 1330 IDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALL--RRSKILVLDEATASVDV--- 1404 (1495)
T ss_pred cCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHH--hCCCEEEEECCcccCCH---
Confidence 54433333333222221 111122 26899999998877532
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 240 GRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 240 ~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
..++ .+.+.|++.. .++|||+++|--
T Consensus 1405 ----~Te~-----~Iq~~L~~~~--~~~TvI~IAHRl 1430 (1495)
T PLN03232 1405 ----RTDS-----LIQRTIREEF--KSCTMLVIAHRL 1430 (1495)
T ss_pred ----HHHH-----HHHHHHHHHc--CCCEEEEEeCCH
Confidence 1221 3444455442 379999999954
No 417
>PRK10867 signal recognition particle protein; Provisional
Probab=98.07 E-value=0.00024 Score=69.06 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=57.7
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCC-CCeEEEEeCCCCCChh---hHHHHHHHcCCCcccccccEEEE-ec
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG-NGKVAYIDTEGTFRPD---RIVPIAERFGMDPGAVLDNIIYA-RA 200 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~-~~~vl~i~~e~~~~~~---rl~~~~~~~~~~~~~~~~~i~~~-~~ 200 (352)
..++.++|++|+||||++..+|..... . +.+|++++++. +.+. +++.++++.+++. +.. ..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~------~~G~kV~lV~~D~-~R~aa~eQL~~~a~~~gv~v-------~~~~~~ 165 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKK------KKKKKVLLVAADV-YRPAAIEQLKTLGEQIGVPV-------FPSGDG 165 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH------hcCCcEEEEEccc-cchHHHHHHHHHHhhcCCeE-------EecCCC
Confidence 479999999999999999999987665 4 67899999874 4443 3444455555432 111 11
Q ss_pred CCHHHHHHHHHHHHHHhhcCCceEEEEcccccc
Q 047388 201 YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIAL 233 (352)
Q Consensus 201 ~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l 233 (352)
.++.. +...........+.++||||....+
T Consensus 166 ~dp~~---i~~~a~~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 166 QDPVD---IAKAALEEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred CCHHH---HHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 23322 2222333334457899999987655
No 418
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.07 E-value=3.7e-05 Score=69.63 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=25.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+.+|+++.|.|++|+|||||+..++...
T Consensus 27 ~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 27 DIYKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 47799999999999999999999776543
No 419
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.06 E-value=1.1e-05 Score=75.90 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=25.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|+|++|||||||+..++..
T Consensus 104 ~I~~Ge~v~IvG~~GsGKSTLl~~L~g~ 131 (329)
T PRK14257 104 DIKRNKVTAFIGPSGCGKSTFLRNLNQL 131 (329)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999999977644
No 420
>PTZ00243 ABC transporter; Provisional
Probab=98.06 E-value=7.5e-06 Score=91.53 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=30.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
=+++|+.+.|+|++|||||||+..+...... ..+.+++|..
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p-------~~G~I~IDG~ 1372 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEV-------CGGEIRVNGR 1372 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCC-------CCcEEEECCE
Confidence 3679999999999999999999966543322 2344566654
No 421
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.06 E-value=0.00026 Score=68.93 Aligned_cols=88 Identities=20% Similarity=0.254 Sum_probs=55.1
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhc-CCCccCCCCCeEEEEeCCCCCCh---hhHHHHHHHcCCCcccccccEEEEec
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQ-LPTNMRGGNGKVAYIDTEGTFRP---DRIVPIAERFGMDPGAVLDNIIYARA 200 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~-~~~~~gg~~~~vl~i~~e~~~~~---~rl~~~~~~~~~~~~~~~~~i~~~~~ 200 (352)
.|.++.|+||+|+||||++..+|.... .. .+.+|.+++++.. .. +.++..++..++.. ...
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~-----~g~~V~li~~D~~-r~~a~eqL~~~a~~~~vp~---------~~~ 284 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLY-----GKKKVALITLDTY-RIGAVEQLKTYAKIMGIPV---------EVV 284 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEECCcc-HHHHHHHHHHHHHHhCCce---------Ecc
Confidence 467999999999999999999988765 31 4678999998642 21 22444444444332 222
Q ss_pred CCHHHHHHHHHHHHHHhhcCCceEEEEcccccc
Q 047388 201 YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIAL 233 (352)
Q Consensus 201 ~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l 233 (352)
.+..++...+.. + .+.++|+||.....
T Consensus 285 ~~~~~l~~~l~~----~--~~~DlVlIDt~G~~ 311 (424)
T PRK05703 285 YDPKELAKALEQ----L--RDCDVILIDTAGRS 311 (424)
T ss_pred CCHHhHHHHHHH----h--CCCCEEEEeCCCCC
Confidence 333333332221 1 25799999987643
No 422
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.06 E-value=4.7e-05 Score=64.18 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=23.5
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcC
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQL 152 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~ 152 (352)
+.+++|+||+|+|||+++.+++.....
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~~~ 47 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLALGG 47 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 479999999999999999988776654
No 423
>PLN03073 ABC transporter F family; Provisional
Probab=98.05 E-value=6.9e-05 Score=77.64 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=24.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+.+|+++.|.|++|||||||+..++.
T Consensus 531 ~i~~Ge~i~LvG~NGsGKSTLLk~L~G 557 (718)
T PLN03073 531 GIDLDSRIAMVGPNGIGKSTILKLISG 557 (718)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999999999996654
No 424
>PF09807 DUF2348: Uncharacterized conserved protein (DUF2348); InterPro: IPR018627 Members of this family of putative uncharacterised proteins have no known function.
Probab=98.05 E-value=0.00021 Score=64.56 Aligned_cols=174 Identities=13% Similarity=0.162 Sum_probs=118.1
Q ss_pred ChhhHHhh---cCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCc
Q 047388 112 SQALDELL---GGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDP 188 (352)
Q Consensus 112 ~~~LD~~L---~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~ 188 (352)
+++|+.+| .+..++|.+++|... ++-=+.|++++....+. .+.+|+|+...++ ...-..+++++|++.
T Consensus 2 f~eln~ll~~~~~~~~~g~~ili~d~-~~dgsFLlh~~L~~~Lk------~~~~V~fv~~~q~--~~HY~~v~~KLG~NL 72 (249)
T PF09807_consen 2 FPELNSLLNWSPDSVPPGKLILIEDC-ETDGSFLLHHFLSQYLK------AGCKVCFVAFSQS--FSHYNNVAQKLGVNL 72 (249)
T ss_pred chHHHHHhcCCCCCCCCCeEEEEEcC-CCCchhHHHHHHHHHhc------CCCcEEEEEccCC--HHHHHHHHHhhEecc
Confidence 45677766 367889999999999 99999999999888777 6789999999987 445677888988876
Q ss_pred ccccc--cEEEEecC-------------------------CHHHHHHHHHHHHHHhhc---CCceEEEEcccccchhccc
Q 047388 189 GAVLD--NIIYARAY-------------------------TYEHQYNLLLGLAAKMSE---EPFRLLIVDSVIALFRVDF 238 (352)
Q Consensus 189 ~~~~~--~i~~~~~~-------------------------~~~~~~~~l~~l~~~l~~---~~~~lvvIDsl~~l~~~~~ 238 (352)
....+ ++.+++.. ....+..+...+.+.+.. .+.-+||||.++.+.....
T Consensus 73 ~~~~~~gql~fiD~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~L~~L~~~I~~~l~~~~~~~~~~liIDdls~Ll~lG~ 152 (249)
T PF09807_consen 73 SAAKEKGQLVFIDGLKSSLDLLFDEDSSDEPNPLKFLREDNASSLRSLYEFIQEALSPADSNGSVVLIIDDLSVLLSLGV 152 (249)
T ss_pred hHhccCCcEEEeehhhhhhhhhhccccccCCccccccccCCcchHHHHHHHHHHHHhhccCCCCeEEEEeCHHHHHHcCC
Confidence 43221 22222211 111233444445444443 3578999999999976322
Q ss_pred CCCcchHHHHHHHHHHHHHHH-HHHHHhCcEEEEEcccccCCCCCcccCCCCCCC-cchhhhhccceEEEEEe
Q 047388 239 TGRGELADRQQKLGQMLSRLT-KISEEFNVAVYMTNQVIADPGGGVFISDPKKPA-GGHVLAHAVTIRLMFRK 309 (352)
Q Consensus 239 ~~~g~~~~r~~~l~~i~~~L~-~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~-gg~~~~~~~~~~i~L~~ 309 (352)
+. ..+-.+++.++ .++.+.+..+|+..|....... .... ....+.|.++.+|.++.
T Consensus 153 ------s~--~~vldF~~ycra~l~~~~~~~lVvl~h~d~~~~~-------e~~~~l~~~L~h~a~l~i~v~~ 210 (249)
T PF09807_consen 153 ------SS--NDVLDFIHYCRATLCSESNGSLVVLVHCDIDDED-------EENDLLLNSLAHMADLVITVEP 210 (249)
T ss_pred ------CH--HHHHHHHHHHHHHhccccCCCEEEEEecCCCCcc-------chHHHHHHHHHHHhcEEEEecC
Confidence 22 22447777777 5777777788887776542111 1122 67889999999999985
No 425
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.05 E-value=5.1e-06 Score=78.22 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=33.1
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
+++++++|+.++-+.. ..| ..+.+.|++++++.+.++|+++|-.
T Consensus 118 ~p~lllLDEP~s~LD~--------~~~----~~l~~~l~~l~~~~g~tiiivTHd~ 161 (325)
T TIGR01187 118 KPKILLLDEPLSALDK--------KLR----DQMQLELKTIQEQLGITFVFVTHDQ 161 (325)
T ss_pred CCCEEEEeCCCccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 7899999998776431 222 2677778888888899999999944
No 426
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=5.6e-05 Score=66.04 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=25.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.+|++..|.||+|||||||+..++.+
T Consensus 26 ~v~~GEvhaiMGPNGsGKSTLa~~i~G~ 53 (251)
T COG0396 26 TVKEGEVHAIMGPNGSGKSTLAYTIMGH 53 (251)
T ss_pred eEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999987754
No 427
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.00015 Score=73.10 Aligned_cols=202 Identities=15% Similarity=0.187 Sum_probs=112.4
Q ss_pred HhCCCCHHHHHHHHHcCCCchhhhhcCCh-----------hhHHhhhCCCHHHHHHHHHHHHHHhhcCCC-------chh
Q 047388 35 ISQGINAGDVKKLQDAGIYTCNGLMMHTK-----------KHLTGIKGLSEAKVEKICEAAEKIVNFGYI-------TGS 96 (352)
Q Consensus 35 ~~~~~~~~~~~~l~~~g~~t~~~~~~~~~-----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 96 (352)
+..|++..++..|-.+.-..+.+...... ....+..-+.++++.+.++.+++.....+. +..
T Consensus 593 ~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~Wd 672 (953)
T KOG0736|consen 593 KTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWD 672 (953)
T ss_pred hcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchh
Confidence 44777777777777666111111111100 112222334556777777766665533221 222
Q ss_pred hh------HHhhhcccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 97 DA------LLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 97 ~~------~~~~~~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
|. ...-.+.-.+|--.+ ++++-|+++.+=++++||||+|||.+|..+|-++- .-|++-.+
T Consensus 673 DVGGLeevK~eIldTIqlPL~hp---eLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-----------L~FlSVKG 738 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHP---ELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-----------LNFLSVKG 738 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccCh---hhhhccccccceeEEECCCCCchHHHHHHHHhhce-----------eeEEeecC
Confidence 22 111111112222222 36778999999999999999999999998776544 34777765
Q ss_pred CCChhhHHHHHHHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhccc-CCC-cchHHHH
Q 047388 171 TFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDF-TGR-GELADRQ 248 (352)
Q Consensus 171 ~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~-~~~-g~~~~r~ 248 (352)
+ +-+. .++. +-.+-+.++-+..++..|.+|++|++.++.+..- +|. |+..+|
T Consensus 739 P---ELLN----------------MYVG------qSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDR- 792 (953)
T KOG0736|consen 739 P---ELLN----------------MYVG------QSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDR- 792 (953)
T ss_pred H---HHHH----------------HHhc------chHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHH-
Confidence 3 3221 1111 1111122233334455899999999999877532 121 333343
Q ss_pred HHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 249 QKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 249 ~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.+.+++..|-.+......-|+++.-.++
T Consensus 793 -VVSQLLAELDgls~~~s~~VFViGATNR 820 (953)
T KOG0736|consen 793 -VVSQLLAELDGLSDSSSQDVFVIGATNR 820 (953)
T ss_pred -HHHHHHHHhhcccCCCCCceEEEecCCC
Confidence 4678888888887655566777766665
No 428
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.05 E-value=5.8e-05 Score=76.36 Aligned_cols=27 Identities=37% Similarity=0.521 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
=+++|+++.|+||+|+|||||+.-++.
T Consensus 364 ~i~~G~~~aivG~sGsGKSTl~~ll~g 390 (555)
T TIGR01194 364 RIAQGDIVFIVGENGCGKSTLAKLFCG 390 (555)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999996654
No 429
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.04 E-value=9.4e-05 Score=67.74 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=57.5
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCCh---hhHHHHHHHcCCCcccccccEEEEecC
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRP---DRIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~---~rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
++.++.++|++|+||||.+..+|..... .+.+|+.++++. +.. +.+..++++.+... +......
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~------~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~------~~~~~~~ 137 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKK------QGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDV------IKQKEGA 137 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh------cCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEE------EeCCCCC
Confidence 4679999999999999999999987654 567899998874 322 44555666665321 0000112
Q ss_pred CHHHHHHHHHHHHHHhhcCCceEEEEcccccc
Q 047388 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIAL 233 (352)
Q Consensus 202 ~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l 233 (352)
++... ....+ ......+.++|+||.....
T Consensus 138 dp~~~--~~~~l-~~~~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 138 DPAAV--AFDAI-QKAKARNIDVVLIDTAGRL 166 (272)
T ss_pred CHHHH--HHHHH-HHHHHCCCCEEEEeCCCCC
Confidence 22211 11111 1223357899999987765
No 430
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.04 E-value=6.8e-05 Score=77.28 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|+||+|||||||+..++.
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~G 500 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGE 500 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999996654
No 431
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=0.00069 Score=64.50 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=44.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCC-CeEEEEeCCCCC--ChhhHHHHHHHcCCCc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGN-GKVAYIDTEGTF--RPDRIVPIAERFGMDP 188 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~-~~vl~i~~e~~~--~~~rl~~~~~~~~~~~ 188 (352)
-++.|.++.|+||+|+||||++..++...... .+ .+|.+++++... ..+.++..++.+++..
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~-----~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~ 197 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAARCVMR-----FGASKVALLTTDSYRIGGHEQLRIFGKILGVPV 197 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHHHHh-----cCCCeEEEEecccccccHHHHHHHHHHHcCCce
Confidence 36678999999999999999999998875431 23 578888876421 2345666666666543
No 432
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.03 E-value=3.7e-05 Score=81.57 Aligned_cols=71 Identities=24% Similarity=0.319 Sum_probs=47.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcc-------ccccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG-------AVLDN 194 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~-------~~~~~ 194 (352)
-+|+|+++.|+|+|||||||+..-+..- -.| ..+.+++|.++- ..-.+.....+.|+-.+ .+.+|
T Consensus 375 ~i~~G~~valVG~SGsGKST~i~LL~Rf-ydP------~~G~V~idG~di-~~~~~~~lr~~iglV~QePvlF~~tI~eN 446 (1228)
T KOG0055|consen 375 KIPSGQTVALVGPSGSGKSTLIQLLARF-YDP------TSGEVLIDGEDI-RNLNLKWLRSQIGLVSQEPVLFATTIREN 446 (1228)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHHh-cCC------CCceEEEcCccc-hhcchHHHHhhcCeeeechhhhcccHHHH
Confidence 4899999999999999999998755443 332 456788888763 22223444445665332 45577
Q ss_pred EEEEec
Q 047388 195 IIYARA 200 (352)
Q Consensus 195 i~~~~~ 200 (352)
+.+.+.
T Consensus 447 I~~G~~ 452 (1228)
T KOG0055|consen 447 IRYGKP 452 (1228)
T ss_pred HhcCCC
Confidence 777654
No 433
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.03 E-value=0.0003 Score=68.08 Aligned_cols=39 Identities=21% Similarity=0.090 Sum_probs=32.8
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
..++.++|++|+||||++..+|..... .+.+|+.++++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~------~G~kV~lV~~D~ 138 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQR------KGFKPCLVCADT 138 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH------CCCCEEEEcCcc
Confidence 368999999999999999999987654 567899998863
No 434
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.03 E-value=6.3e-05 Score=74.89 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=36.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCC----CCCeEEEEeCCCCCCh
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRG----GNGKVAYIDTEGTFRP 174 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg----~~~~vl~i~~e~~~~~ 174 (352)
-+.+|+-+.|+|++|+|||||+.-++.. ..++.|. .+-++.|+.-+..+..
T Consensus 25 ~~~~G~riGLvG~NGaGKSTLLkilaG~--~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 25 TLNPGERIGLVGRNGAGKSTLLKILAGE--LEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHcCC--CcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 5889999999999999999999965533 3333332 2347888887766553
No 435
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.02 E-value=1e-05 Score=71.41 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=24.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.|++|+|||||+..++.
T Consensus 9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~G 35 (213)
T PRK15177 9 VMGYHEHIGILAAPGSGKTTLTRLLCG 35 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999997654
No 436
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.02 E-value=1.1e-05 Score=70.46 Aligned_cols=27 Identities=26% Similarity=0.185 Sum_probs=22.3
Q ss_pred CCC-cEEEEecCCCCChhHHHHHHHHHh
Q 047388 124 ETG-AITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 124 ~~G-~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
..| .++.|+||+|+|||||+..++...
T Consensus 25 ~~~~~~~~ltG~Ng~GKStll~~i~~~~ 52 (200)
T cd03280 25 GENKRVLVITGPNAGGKTVTLKTLGLLT 52 (200)
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHH
Confidence 345 589999999999999999887433
No 437
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.02 E-value=9.3e-05 Score=69.27 Aligned_cols=94 Identities=19% Similarity=0.176 Sum_probs=57.0
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCCh---hhHHHHHHHcCCCcccccccEEEEec
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRP---DRIVPIAERFGMDPGAVLDNIIYARA 200 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~---~rl~~~~~~~~~~~~~~~~~i~~~~~ 200 (352)
.+|.++.++||+|+||||++..+|..... .+++|+.++... +.. +++..++.+.++.. +.....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~------~g~~V~Li~~D~-~r~~a~eql~~~a~~~~i~~------~~~~~~ 178 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKA------QGKKVLLAAGDT-FRAAAIEQLQVWGERVGVPV------IAQKEG 178 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHh------cCCeEEEEecCc-cchhhHHHHHHHHHHcCceE------EEeCCC
Confidence 46899999999999999999999987664 567898888753 332 33444555554321 000011
Q ss_pred CCHHHHHHHHHHHHHHhhcCCceEEEEcccccc
Q 047388 201 YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIAL 233 (352)
Q Consensus 201 ~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l 233 (352)
.++.. .....+.. ....+.++|+||....+
T Consensus 179 ~dpa~--~v~~~l~~-~~~~~~D~ViIDTaGr~ 208 (318)
T PRK10416 179 ADPAS--VAFDAIQA-AKARGIDVLIIDTAGRL 208 (318)
T ss_pred CCHHH--HHHHHHHH-HHhCCCCEEEEeCCCCC
Confidence 12211 11111211 12357899999987765
No 438
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.01 E-value=9.2e-05 Score=69.72 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=34.2
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQ 274 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h 274 (352)
..|+++|-|+.+..+.- . ...++++.|+.|-+++|.++++++|
T Consensus 174 n~P~lLIADEPTTALDV--------t----vQaQIL~Ll~~Lq~~~gMa~lfITH 216 (534)
T COG4172 174 NEPDLLIADEPTTALDV--------T----VQAQILDLLKELQAELGMAILFITH 216 (534)
T ss_pred CCCCeEeecCCcchhhh--------h----hHHHHHHHHHHHHHHhCcEEEEEec
Confidence 36888888887766421 1 2258999999999999999999999
No 439
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.01 E-value=0.00015 Score=61.87 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=23.7
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHH
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
=++.+|+++++.||||||||||+.-+|
T Consensus 26 L~ia~ge~vv~lGpSGcGKTTLLnl~A 52 (259)
T COG4525 26 LTIASGELVVVLGPSGCGKTTLLNLIA 52 (259)
T ss_pred eeecCCCEEEEEcCCCccHHHHHHHHh
Confidence 478899999999999999999998444
No 440
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=98.00 E-value=3.6e-05 Score=67.20 Aligned_cols=161 Identities=20% Similarity=0.147 Sum_probs=92.2
Q ss_pred CCCCcE-EEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH-cCCCcccccccEEEEec
Q 047388 123 IETGAI-TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER-FGMDPGAVLDNIIYARA 200 (352)
Q Consensus 123 l~~G~i-~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~-~~~~~~~~~~~i~~~~~ 200 (352)
...|.+ ++|.|||++||||++..+|........ +-.+.+|..+|+.+. ++-. .|.+....-.++.+.+.
T Consensus 133 y~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~-~~l~kkv~IiDersE--------Iag~~~gvpq~~~g~R~dVld~ 203 (308)
T COG3854 133 YQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGIN-QFLPKKVGIIDERSE--------IAGCLNGVPQHGRGRRMDVLDP 203 (308)
T ss_pred HhcCceeeEEecCCCCChHHHHHHHHHHhhcccc-ccCCceEEEEeccch--------hhccccCCchhhhhhhhhhccc
Confidence 346777 999999999999999999987664221 125678999987643 2211 11111111112222222
Q ss_pred CCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCC
Q 047388 201 YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPG 280 (352)
Q Consensus 201 ~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~ 280 (352)
.... + -+...+..+.|+++|+|++.... .....+. |-..|+-+|.+.|-..- +
T Consensus 204 cpk~---~---gmmmaIrsm~PEViIvDEIGt~~------------------d~~A~~t--a~~~GVkli~TaHG~~i-e 256 (308)
T COG3854 204 CPKA---E---GMMMAIRSMSPEVIIVDEIGTEE------------------DALAILT--ALHAGVKLITTAHGNGI-E 256 (308)
T ss_pred chHH---H---HHHHHHHhcCCcEEEEeccccHH------------------HHHHHHH--HHhcCcEEEEeeccccH-H
Confidence 1111 1 12224456689999999997652 1111122 22469999999996541 1
Q ss_pred CCcccCCCCCCCcchhhhh-ccceEEEEEeecCCeEEEEEEeCCC
Q 047388 281 GGVFISDPKKPAGGHVLAH-AVTIRLMFRKGKGEQRVCKVFDAPN 324 (352)
Q Consensus 281 ~~~~~~~~~~~~gg~~~~~-~~~~~i~L~~~~~~~R~~~i~Ks~~ 324 (352)
. -.+.|.+...|.. +.+--+.+++.+|...+..++|.|.
T Consensus 257 d-----l~krp~lkdlv~i~af~r~~elsrr~g~g~v~~ird~~~ 296 (308)
T COG3854 257 D-----LIKRPTLKDLVEIQAFDRGIELSRRRGPGTVVLIRDAPP 296 (308)
T ss_pred H-----hhcChhHHHHHhhhHHHHHHHHhhccCCCeEEEEecCCC
Confidence 1 0134777777754 3444455666566666677777653
No 441
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.5e-05 Score=66.17 Aligned_cols=41 Identities=24% Similarity=0.292 Sum_probs=29.8
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
|.+|+++.|.||+|+|||||+.-+|.-... ..+ -+|+..+.
T Consensus 25 l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p------~~G-~v~~~~~~ 65 (209)
T COG4133 25 LNAGEALQITGPNGAGKTTLLRILAGLLRP------DAG-EVYWQGEP 65 (209)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcccCC------CCC-eEEecCCC
Confidence 568999999999999999999966543332 334 45555544
No 442
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.99 E-value=4.5e-05 Score=75.40 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=65.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
|+++..-++|+||||+|||+++..++.....+... .......|++...+ . +. .. ++ ..
T Consensus 212 gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~-~~~~~~~fl~v~~~---e----Ll-----------~k-yv--Ge 269 (512)
T TIGR03689 212 DLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGA-ETGDKSYFLNIKGP---E----LL-----------NK-YV--GE 269 (512)
T ss_pred cCCCCcceEEECCCCCcHHHHHHHHHHhhcccccc-ccCCceeEEeccch---h----hc-----------cc-cc--ch
Confidence 56666669999999999999999887765432100 01223444443321 0 00 00 00 00
Q ss_pred CHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEc
Q 047388 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTN 273 (352)
Q Consensus 202 ~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~ 273 (352)
.......++..+........+.+|+||++..++...-.+...-.++ ..+..++..|..+....++.||.++
T Consensus 270 te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~-~il~~LL~~LDgl~~~~~ViVI~AT 340 (512)
T TIGR03689 270 TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVET-TVVPQLLSELDGVESLDNVIVIGAS 340 (512)
T ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHH-HHHHHHHHHhcccccCCceEEEecc
Confidence 0111222333333333334688999999999876432211111122 2345666666555444456666544
No 443
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.98 E-value=2.1e-05 Score=88.09 Aligned_cols=42 Identities=21% Similarity=0.185 Sum_probs=31.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
-+++|+.+.|+|++|||||||+..+..-... ..+.++||..+
T Consensus 1308 ~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~-------~~G~I~IdG~d 1349 (1522)
T TIGR00957 1308 TIHGGEKVGIVGRTGAGKSSLTLGLFRINES-------AEGEIIIDGLN 1349 (1522)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCccC-------CCCeEEECCEE
Confidence 5789999999999999999999976543322 23446666643
No 444
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.98 E-value=0.00018 Score=65.15 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=24.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
=+.+|+++.|.|++|+|||||+..++.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 27 DFNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999999997764
No 445
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.98 E-value=0.0005 Score=66.78 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=56.9
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChh---hHHHHHHHcCCCcccccccEEEEecCCH
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPD---RIVPIAERFGMDPGAVLDNIIYARAYTY 203 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~---rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 203 (352)
.++.++|++|+||||++..+|...... .+.+|++++++. +.+. .+..++++.+++. +......++
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~-----~g~kV~lV~~D~-~R~~a~~QL~~~a~~~gvp~------~~~~~~~~P 167 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKK-----QGKKVLLVACDL-YRPAAIEQLKVLGQQVGVPV------FALGKGQSP 167 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHh-----CCCeEEEEeccc-cchHHHHHHHHHHHhcCCce------EecCCCCCH
Confidence 699999999999999999999875421 467899999874 3332 2334455555432 111111223
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccccc
Q 047388 204 EHQYNLLLGLAAKMSEEPFRLLIVDSVIAL 233 (352)
Q Consensus 204 ~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l 233 (352)
.. +.....+.+...+.++||||....+
T Consensus 168 ~~---i~~~al~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 168 VE---IARRALEYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HH---HHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 22 2222333344457899999987655
No 446
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.98 E-value=9.5e-05 Score=73.75 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=38.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCC----CCCeEEEEeCCCCCChhhHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRG----GNGKVAYIDTEGTFRPDRIVP 179 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg----~~~~vl~i~~e~~~~~~rl~~ 179 (352)
.+++|+-+.|.|+||||||+|...+| .+.|...|. .+..++|+.-..-++.-.+++
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaia--GLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre 474 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALA--GLWPWGSGRISMPADSALLFLPQRPYLPQGTLRE 474 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHh--ccCccCCCceecCCCCceEEecCCCCCCCccHHH
Confidence 68999999999999999999999554 566654443 234467776554444433433
No 447
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=3.8e-05 Score=71.11 Aligned_cols=128 Identities=22% Similarity=0.309 Sum_probs=82.3
Q ss_pred cccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHc-CC
Q 047388 108 ITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERF-GM 186 (352)
Q Consensus 108 i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~-~~ 186 (352)
+|--.|+|=+-+ |+.|-.=++++||||+|||.|+...|.. -.+-||-.-++ + ..++| |
T Consensus 169 LPL~~PElF~~~--GI~PPKGVLLYGPPGTGKTLLAkAVA~~-----------T~AtFIrvvgS---E----lVqKYiG- 227 (406)
T COG1222 169 LPLKNPELFEEL--GIDPPKGVLLYGPPGTGKTLLAKAVANQ-----------TDATFIRVVGS---E----LVQKYIG- 227 (406)
T ss_pred ccccCHHHHHHc--CCCCCCceEeeCCCCCcHHHHHHHHHhc-----------cCceEEEeccH---H----HHHHHhc-
Confidence 333334443334 7888888999999999999999966532 23455544332 2 11111 1
Q ss_pred CcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccC-CCcchHHHHHHHHHHHHHHHHHHHHh
Q 047388 187 DPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFT-GRGELADRQQKLGQMLSRLTKISEEF 265 (352)
Q Consensus 187 ~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~-~~g~~~~r~~~l~~i~~~L~~la~~~ 265 (352)
+-..++.++.++..++.|.+|+||.+.++-...+. +.+.-.+-|+.+-++++.|-.+-..-
T Consensus 228 ------------------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 228 ------------------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred ------------------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 11234455666677789999999999888654443 22333556677778888888877777
Q ss_pred CcEEEEEcc
Q 047388 266 NVAVYMTNQ 274 (352)
Q Consensus 266 ~~~viv~~h 274 (352)
|+-||+.+.
T Consensus 290 nvKVI~ATN 298 (406)
T COG1222 290 NVKVIMATN 298 (406)
T ss_pred CeEEEEecC
Confidence 888887655
No 448
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=0.00078 Score=66.51 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=35.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
.+..|.++.|+|++|+||||++..|+...... +.+.+|.+++++.
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~----~~gkkVaLIdtDt 390 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQ----HAPRDVALVTTDT 390 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHh----cCCCceEEEeccc
Confidence 45678999999999999999999988765542 0246788888763
No 449
>PF13173 AAA_14: AAA domain
Probab=97.95 E-value=7e-05 Score=60.46 Aligned_cols=39 Identities=23% Similarity=0.201 Sum_probs=32.6
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~ 171 (352)
+.++.|.||.|+||||++.+++.... .+.+++|++.++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-------~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-------PPENILYINFDDP 40 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-------ccccceeeccCCH
Confidence 56899999999999999999987654 2467899998864
No 450
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.95 E-value=6.4e-05 Score=73.13 Aligned_cols=119 Identities=18% Similarity=0.233 Sum_probs=66.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
|+.++.-++|+||||+|||+++..++.... ...+.+.... +...+ +
T Consensus 213 gi~~p~gVLL~GPPGTGKT~LAraIA~el~---------~~fi~V~~se---------L~~k~------------~---- 258 (438)
T PTZ00361 213 GIKPPKGVILYGPPGTGKTLLAKAVANETS---------ATFLRVVGSE---------LIQKY------------L---- 258 (438)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHhhC---------CCEEEEecch---------hhhhh------------c----
Confidence 678888899999999999999998876432 2223332211 00000 0
Q ss_pred CHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCC-CcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTG-RGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 202 ~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~-~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.+....+..+........+.+|+||.+..+....... .+...+-++.+..++..|..+....++.||++++-.
T Consensus 259 --Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~ 332 (438)
T PTZ00361 259 --GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRI 332 (438)
T ss_pred --chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCCh
Confidence 0001112222223334578899999998886532211 111122233445566666665556688888877643
No 451
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=97.95 E-value=4.7e-05 Score=71.81 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=36.4
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.+++++++|.+.+++.. +. ...+++.+.++|++.++|+++++|-.
T Consensus 524 erpn~~~iDEF~AhLD~-------~T-----A~rVArkiselaRe~giTlivvThrp 568 (593)
T COG2401 524 ERPNVLLIDEFAAHLDE-------LT-----AVRVARKISELAREAGITLIVVTHRP 568 (593)
T ss_pred cCCCcEEhhhhhhhcCH-------HH-----HHHHHHHHHHHHHHhCCeEEEEecCH
Confidence 47899999999888531 22 34889999999999999999988744
No 452
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=3.4e-05 Score=70.45 Aligned_cols=134 Identities=17% Similarity=0.196 Sum_probs=77.6
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYT 202 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 202 (352)
+--..++++.||||+|||+||..+|-........ ...+...+.-.. ..-+.+++...|
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~--~y~~~~liEins---hsLFSKWFsESg----------------- 231 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTND--RYYKGQLIEINS---HSLFSKWFSESG----------------- 231 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecC--ccccceEEEEeh---hHHHHHHHhhhh-----------------
Confidence 3446789999999999999999888665432110 111111111110 011112221111
Q ss_pred HHHHHHHHHHHHHHhhcC-CceEEEEcccccchhc--ccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCC
Q 047388 203 YEHQYNLLLGLAAKMSEE-PFRLLIVDSVIALFRV--DFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADP 279 (352)
Q Consensus 203 ~~~~~~~l~~l~~~l~~~-~~~lvvIDsl~~l~~~--~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~ 279 (352)
.-...+++++.+.+... ..=.|.||++-++-.. ..+++.+.++-.+.+..++..|.++-+..|+.++.|+.+....
T Consensus 232 -KlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~si 310 (423)
T KOG0744|consen 232 -KLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSI 310 (423)
T ss_pred -hHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHH
Confidence 11234455666666554 3456678987666432 2223334444456678888999999888899999998887654
No 453
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.94 E-value=7.9e-05 Score=68.57 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=68.6
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCCh-hhHHHHHHHcCCCcccccccEEEEecCC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRP-DRIVPIAERFGMDPGAVLDNIIYARAYT 202 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~-~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 202 (352)
....++.|.|.+|+|||+|+.+++....... .-..++|++....... .-+..+++.++...... ....+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~----~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~------~~~~~ 86 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKN----RFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI------SDPKD 86 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCC----CCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS------SCCSS
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccc----cccccccccccccccccccccccccccccccccc------ccccc
Confidence 7788999999999999999998886522211 2357888876654443 33556777776653221 01122
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 203 YEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 203 ~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
... ....+.+.+... .-++|+|++.... .+..+...+.. ...++.||+|+...
T Consensus 87 ~~~---~~~~l~~~L~~~-~~LlVlDdv~~~~---------------~~~~l~~~~~~--~~~~~kilvTTR~~ 139 (287)
T PF00931_consen 87 IEE---LQDQLRELLKDK-RCLLVLDDVWDEE---------------DLEELREPLPS--FSSGSKILVTTRDR 139 (287)
T ss_dssp HHH---HHHHHHHHHCCT-SEEEEEEEE-SHH---------------HH-------HC--HHSS-EEEEEESCG
T ss_pred ccc---ccccchhhhccc-cceeeeeeecccc---------------ccccccccccc--cccccccccccccc
Confidence 222 334445555544 7899999865441 12233333322 23588899987643
No 454
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.94 E-value=0.00065 Score=66.18 Aligned_cols=55 Identities=27% Similarity=0.368 Sum_probs=40.3
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCCh---hhHHHHHHHcCC
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRP---DRIVPIAERFGM 186 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~---~rl~~~~~~~~~ 186 (352)
+..++.++|++|+||||++..+|..... .+.+|+++++.. +.+ +.++.++++.++
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~------~g~kV~lV~~D~-~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK------KGLKVGLVAADT-YRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH------cCCeEEEecCCC-CCHHHHHHHHHHHHHcCC
Confidence 3568999999999999999999877654 567899998864 333 234555555554
No 455
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.92 E-value=7.8e-05 Score=65.05 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=20.8
Q ss_pred EEEEecCCCCChhHHHHHHHHHhc
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQ 151 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~ 151 (352)
++.|+||+||||||++..++....
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 789999999999999988766544
No 456
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.92 E-value=0.00014 Score=66.18 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=24.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
.||.|.++.|+|.||||||||+..+.
T Consensus 17 ~ip~g~~~~vtGvSGsGKStL~~~~l 42 (261)
T cd03271 17 DIPLGVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred eccCCcEEEEECCCCCchHHHHHHHH
Confidence 58999999999999999999998764
No 457
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.92 E-value=2.6e-05 Score=87.11 Aligned_cols=130 Identities=17% Similarity=0.168 Sum_probs=72.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcc-------ccccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG-------AVLDN 194 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~-------~~~~~ 194 (352)
=+++|+.+.|+|++|||||||+..++.-. + ..+.++||..+- ....+..+.+++++-|+ ++.+|
T Consensus 1241 ~I~~GekvaIvGrSGsGKSTLl~lL~rl~--~------~~G~I~IdG~di-~~i~~~~lR~~is~IpQdp~LF~GTIR~N 1311 (1490)
T TIGR01271 1241 SVEGGQRVGLLGRTGSGKSTLLSALLRLL--S------TEGEIQIDGVSW-NSVTLQTWRKAFGVIPQKVFIFSGTFRKN 1311 (1490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhc--C------CCcEEEECCEEc-ccCCHHHHHhceEEEeCCCccCccCHHHH
Confidence 47899999999999999999999776543 2 123456666432 12122333333433222 34444
Q ss_pred EEEEecCCHHHHH-----------------------------------HHHHHHHHHhhcCCceEEEEcccccchhcccC
Q 047388 195 IIYARAYTYEHQY-----------------------------------NLLLGLAAKMSEEPFRLLIVDSVIALFRVDFT 239 (352)
Q Consensus 195 i~~~~~~~~~~~~-----------------------------------~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~ 239 (352)
+......+.++.. +.+.-.+..+ .+++++++|+.++-...+
T Consensus 1312 Ldp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALL--r~~~ILlLDEaTS~lD~~-- 1387 (1490)
T TIGR01271 1312 LDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSIL--SKAKILLLDEPSAHLDPV-- 1387 (1490)
T ss_pred hCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHh--CCCCEEEEeCCcccCCHH--
Confidence 4322222222222 2222112222 268999999988875321
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 240 GRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 240 ~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.+ ..+.+.|+... .++|||+++|-.
T Consensus 1388 -----Te-----~~I~~~L~~~~--~~~TvI~IaHRl 1412 (1490)
T TIGR01271 1388 -----TL-----QIIRKTLKQSF--SNCTVILSEHRV 1412 (1490)
T ss_pred -----HH-----HHHHHHHHHHc--CCCEEEEEecCH
Confidence 11 24555565543 379999999954
No 458
>PLN03211 ABC transporter G-25; Provisional
Probab=97.92 E-value=1.7e-05 Score=81.48 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=26.4
Q ss_pred cCCCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 120 GGGIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 120 ~GGl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.+=+++|+++.|.||||+|||||+..++..
T Consensus 88 s~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~ 117 (659)
T PLN03211 88 TGMASPGEILAVLGPSGSGKSTLLNALAGR 117 (659)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999999976643
No 459
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.91 E-value=0.00016 Score=70.42 Aligned_cols=157 Identities=15% Similarity=0.196 Sum_probs=83.9
Q ss_pred cccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcC
Q 047388 106 IKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFG 185 (352)
Q Consensus 106 ~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~ 185 (352)
..+.||+..+|.++ =+.+|+.+.|+|++|+|||+|+..++... . ....++.+..+..-+ +.++.+. .
T Consensus 140 ~~l~tg~~vid~l~--~i~~Gq~i~I~G~sG~GKStLl~~I~~~~-~------~~~gvI~~~Gerg~e---v~e~~~~-~ 206 (438)
T PRK07721 140 EPMEVGVRAIDSLL--TVGKGQRVGIFAGSGVGKSTLMGMIARNT-S------ADLNVIALIGERGRE---VREFIER-D 206 (438)
T ss_pred cccccchhhhheee--eecCCcEEEEECCCCCCHHHHHHHHhccc-C------CCeEEEEEEecCCcc---HHHHHHh-h
Confidence 46899999999985 58999999999999999999997665432 2 233456666665422 2322222 0
Q ss_pred CCcccccccEEEEecCCHHHHHHH-----HHHHHHHhhcCCce-EEEEcccccchhcc--c-------CCCcchHHHHHH
Q 047388 186 MDPGAVLDNIIYARAYTYEHQYNL-----LLGLAAKMSEEPFR-LLIVDSVIALFRVD--F-------TGRGELADRQQK 250 (352)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~~~~~~~-----l~~l~~~l~~~~~~-lvvIDsl~~l~~~~--~-------~~~g~~~~r~~~ 250 (352)
++...+...+.++...+..-.... -..+.+.+...+-+ ++++||++.+.... . .+...+.. ..
T Consensus 207 l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp--~~ 284 (438)
T PRK07721 207 LGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTP--SV 284 (438)
T ss_pred cChhhhcCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCH--HH
Confidence 111112233444432221111111 11233444444444 66789999875531 1 11111111 12
Q ss_pred HHHHHHHHHHHHH-HhCc-----EEEEEccccc
Q 047388 251 LGQMLSRLTKISE-EFNV-----AVYMTNQVIA 277 (352)
Q Consensus 251 l~~i~~~L~~la~-~~~~-----~viv~~h~~~ 277 (352)
...+.+.+.++.. ..|. ||++.+|-..
T Consensus 285 ~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~ 317 (438)
T PRK07721 285 FAILPKLLERTGTNASGSITAFYTVLVDGDDMN 317 (438)
T ss_pred HHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC
Confidence 2355566666653 3463 6666666443
No 460
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.90 E-value=0.00017 Score=72.95 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=24.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+.+|+++.|.|++|||||||+..++.
T Consensus 344 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G 370 (552)
T TIGR03719 344 KLPPGGIVGVIGPNGAGKSTLFRMITG 370 (552)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999999996653
No 461
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.90 E-value=0.00012 Score=64.85 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=26.4
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQL 152 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~ 152 (352)
+..|+++.|.||+|+|||+|+.+++....+
T Consensus 28 ~~~g~~~~itG~N~~GKStll~~i~~~~~l 57 (222)
T cd03287 28 AEGGYCQIITGPNMGGKSSYIRQVALITIM 57 (222)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999886555
No 462
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.89 E-value=0.00016 Score=66.02 Aligned_cols=95 Identities=22% Similarity=0.213 Sum_probs=51.4
Q ss_pred CCCCC-cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEE-eCCCCCChhhHHHHHHHcCCCcccccccEEEEe
Q 047388 122 GIETG-AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYI-DTEGTFRPDRIVPIAERFGMDPGAVLDNIIYAR 199 (352)
Q Consensus 122 Gl~~G-~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i-~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~ 199 (352)
+++++ .++.|+|++|+||||++..++..... ....+.++ .+..+ ..+-+..++..+|...+.
T Consensus 38 ~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~------~~~~~~~~~~~~~~-~~~~l~~i~~~lG~~~~~--------- 101 (269)
T TIGR03015 38 GLSQREGFILITGEVGAGKTTLIRNLLKRLDQ------ERVVAAKLVNTRVD-AEDLLRMVAADFGLETEG--------- 101 (269)
T ss_pred HHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC------CCeEEeeeeCCCCC-HHHHHHHHHHHcCCCCCC---------
Confidence 34444 48999999999999999988655332 11122232 22222 123345666677765421
Q ss_pred cCCHHHHHH-HHHHHHHHhhcCCceEEEEcccccc
Q 047388 200 AYTYEHQYN-LLLGLAAKMSEEPFRLLIVDSVIAL 233 (352)
Q Consensus 200 ~~~~~~~~~-~l~~l~~~l~~~~~~lvvIDsl~~l 233 (352)
.+...... +...+.......+..++|||....+
T Consensus 102 -~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l 135 (269)
T TIGR03015 102 -RDKAALLRELEDFLIEQFAAGKRALLVVDEAQNL 135 (269)
T ss_pred -CCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccC
Confidence 11111111 2122223333456679999997765
No 463
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=97.89 E-value=0.0002 Score=69.02 Aligned_cols=135 Identities=15% Similarity=0.247 Sum_probs=80.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcc-------ccccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPG-------AVLDN 194 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~-------~~~~~ 194 (352)
-+++|..+.++||||+||||++.-+..-.- .+.+++-||..+- ..-......+..|.-|+ .++.|
T Consensus 560 ~v~pGktvAlVG~SGaGKSTimRlLfRffd-------v~sGsI~iDgqdI-rnvt~~SLRs~IGVVPQDtvLFNdTI~yN 631 (790)
T KOG0056|consen 560 TVQPGKTVALVGPSGAGKSTIMRLLFRFFD-------VNSGSITIDGQDI-RNVTQSSLRSSIGVVPQDTVLFNDTILYN 631 (790)
T ss_pred EecCCcEEEEECCCCCchhHHHHHHHHHhh-------ccCceEEEcCchH-HHHHHHHHHHhcCcccCcceeecceeeeh
Confidence 478999999999999999999985554332 3567788887653 22223334455777664 46677
Q ss_pred EEEEecCCHHH-HHHHH------HHHH------------------------HHhh---cCCceEEEEcccccchhcccCC
Q 047388 195 IIYARAYTYEH-QYNLL------LGLA------------------------AKMS---EEPFRLLIVDSVIALFRVDFTG 240 (352)
Q Consensus 195 i~~~~~~~~~~-~~~~l------~~l~------------------------~~l~---~~~~~lvvIDsl~~l~~~~~~~ 240 (352)
|.+.++...++ ..+.. +++. -.+. -..|.+|.+|+-++.+..
T Consensus 632 Iryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT---- 707 (790)
T KOG0056|consen 632 IRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDT---- 707 (790)
T ss_pred eeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCC----
Confidence 88877654332 21111 0110 0000 126889999998877543
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 241 RGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 241 ~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
..+| .+-..|.++|. ...+||+.+.+++
T Consensus 708 ---~tER-----~IQaaL~rlca-~RTtIVvAHRLST 735 (790)
T KOG0056|consen 708 ---NTER-----AIQAALARLCA-NRTTIVVAHRLST 735 (790)
T ss_pred ---ccHH-----HHHHHHHHHhc-CCceEEEeeeehh
Confidence 2455 44556778886 3455555544444
No 464
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.87 E-value=8.7e-05 Score=68.42 Aligned_cols=88 Identities=24% Similarity=0.264 Sum_probs=53.8
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCC--hhhHHHHHHHcCCCcccccccEEEEecC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFR--PDRIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~--~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
+.+.++.|+||+|+||||++..++....... .+.+|.+++++.... .+.+...++.++++. ....
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~----g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~---------~~~~ 258 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEH----GNKKVALITTDTYRIGAVEQLKTYAKILGVPV---------KVAR 258 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHc----CCCeEEEEECCccchhHHHHHHHHHHHhCCce---------eccC
Confidence 4678999999999999999999988765410 136899999874211 223344444444332 1223
Q ss_pred CHHHHHHHHHHHHHHhhcCCceEEEEccc
Q 047388 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSV 230 (352)
Q Consensus 202 ~~~~~~~~l~~l~~~l~~~~~~lvvIDsl 230 (352)
+...+...+. .+ .+.++|+||..
T Consensus 259 ~~~~l~~~l~----~~--~~~d~vliDt~ 281 (282)
T TIGR03499 259 DPKELRKALD----RL--RDKDLILIDTA 281 (282)
T ss_pred CHHHHHHHHH----Hc--cCCCEEEEeCC
Confidence 3333333222 22 24799999974
No 465
>PRK06921 hypothetical protein; Provisional
Probab=97.87 E-value=0.00013 Score=66.66 Aligned_cols=38 Identities=21% Similarity=0.094 Sum_probs=31.8
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCC-CCeEEEEeCC
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG-NGKVAYIDTE 169 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~-~~~vl~i~~e 169 (352)
+.-+.|+|++|+|||.|+..++..+.. . +..|+|++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~------~~g~~v~y~~~~ 155 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR------KKGVPVLYFPFV 155 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh------hcCceEEEEEHH
Confidence 567899999999999999988877654 4 6789998863
No 466
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.87 E-value=0.0002 Score=72.54 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+.+|+++.|.|++|||||||+..++.
T Consensus 346 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G 372 (556)
T PRK11819 346 SLPPGGIVGIIGPNGAGKSTLFKMITG 372 (556)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999997663
No 467
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.86 E-value=6.6e-05 Score=84.94 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
.+++|+++.|.|++|+|||||+..++.
T Consensus 952 ~I~~Gei~aLLG~NGAGKSTLLkiLaG 978 (2272)
T TIGR01257 952 TFYENQITAFLGHNGAGKTTTLSILTG 978 (2272)
T ss_pred EEcCCcEEEEECCCCChHHHHHHHHhc
Confidence 588999999999999999999996554
No 468
>PRK12377 putative replication protein; Provisional
Probab=97.86 E-value=7.8e-05 Score=67.19 Aligned_cols=37 Identities=16% Similarity=0.053 Sum_probs=31.0
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
.-+.|.|+||+|||.|+..++..+.. .+..|+|++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~------~g~~v~~i~~~ 138 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA------KGRSVIVVTVP 138 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH------cCCCeEEEEHH
Confidence 46899999999999999998877765 56778998775
No 469
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=97.86 E-value=1.5e-05 Score=81.89 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=24.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
=+++|+++.|.|++|+|||||+..++..
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 57 (648)
T PRK10535 30 DIYAGEMVAIVGASGSGKSTLMNILGCL 57 (648)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999999976644
No 470
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.85 E-value=8.5e-05 Score=66.80 Aligned_cols=36 Identities=28% Similarity=0.251 Sum_probs=30.5
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeC
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDT 168 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~ 168 (352)
..+.|.|+||+|||+|+..++..+.. .+.+|+|++.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~------~g~~v~~it~ 135 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL------RGKSVLIITV 135 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEEH
Confidence 36899999999999999999887665 5678999864
No 471
>PRK08727 hypothetical protein; Validated
Probab=97.85 E-value=7.6e-05 Score=66.86 Aligned_cols=38 Identities=26% Similarity=0.367 Sum_probs=30.8
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
...+.|+|++|+|||.|+..++..+.. .+.+++|++.+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~------~~~~~~y~~~~ 78 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQ------AGRSSAYLPLQ 78 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEEeHH
Confidence 356999999999999999988777654 46688998754
No 472
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.85 E-value=0.0011 Score=59.78 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=40.7
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+++++++|++++.+.. ..+ ..+...|++++++ +.+||+++|-.. +...
T Consensus 177 ~p~~lllDEPt~~LD~--------~~~----~~l~~~i~~~~~~-g~~vi~isH~~~-------------------~~~~ 224 (247)
T cd03275 177 PAPFFVLDEVDAALDN--------TNV----GKVASYIREQAGP-NFQFIVISLKEE-------------------FFSK 224 (247)
T ss_pred CCCEEEEecccccCCH--------HHH----HHHHHHHHHhccC-CcEEEEEECCHH-------------------HHhh
Confidence 5799999998877532 222 2566677777654 889999999532 1245
Q ss_pred cceEEEEEeec
Q 047388 301 VTIRLMFRKGK 311 (352)
Q Consensus 301 ~~~~i~L~~~~ 311 (352)
+|..+.+.|..
T Consensus 225 ~d~i~~~~~~~ 235 (247)
T cd03275 225 ADALVGVYRDQ 235 (247)
T ss_pred CCeEEEEEecC
Confidence 78888888753
No 473
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=97.84 E-value=0.00043 Score=57.46 Aligned_cols=127 Identities=20% Similarity=0.241 Sum_probs=71.5
Q ss_pred EEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEec-CCHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARA-YTYEHQ 206 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~ 206 (352)
.+.|.|+.-||||.++-.++.. .++.++||.|-..|+.+--.++.....--+ +....... .+.
T Consensus 2 ~ilvtGgaRSGKS~~AE~la~~---------~~~~v~YvAT~~a~D~Em~~RI~~Hr~rRp----~~W~tvE~~~~l--- 65 (175)
T COG2087 2 MILVTGGARSGKSSFAEALAGE---------SGGQVLYVATGRAFDDEMQERIAHHRARRP----EHWRTVEAPLDL--- 65 (175)
T ss_pred eEEEecCccCCchHHHHHHHHh---------hCCceEEEEecCCCCHHHHHHHHHHHhcCC----CcceEEeccccH---
Confidence 5789999999999999988865 367899999998887653333333322222 12222211 111
Q ss_pred HHHHHHHHHHhhcC--CceEEEEcccccchhcccC-CCcchHHHHHHHHHHHH-HHHHHHHHhCcEEEEEcccccC
Q 047388 207 YNLLLGLAAKMSEE--PFRLLIVDSVIALFRVDFT-GRGELADRQQKLGQMLS-RLTKISEEFNVAVYMTNQVIAD 278 (352)
Q Consensus 207 ~~~l~~l~~~l~~~--~~~lvvIDsl~~l~~~~~~-~~g~~~~r~~~l~~i~~-~L~~la~~~~~~viv~~h~~~~ 278 (352)
.. .+... +-++|+||+++.+....+- +..+... ...+..... .+..+....+..|+++|.+...
T Consensus 66 ~~-------~L~~~~~~~~~VLvDcLt~wvtNll~~~e~~~~~-~~~~~~~~~~L~~al~~~~~~~ilVsNEvG~G 133 (175)
T COG2087 66 AT-------LLEALIEPGDVVLVDCLTLWVTNLLFAGEKDWSA-EAAIEAEIEALLAALSRAPGTVVLVSNEVGLG 133 (175)
T ss_pred HH-------HHHhcccCCCEEEEEcHHHHHHHHHhccccccch-hhhHHHHHHHHHHHHhcCCccEEEEecCccCC
Confidence 11 22222 3489999999988765332 1111111 111222333 3333444445677888887653
No 474
>PRK08181 transposase; Validated
Probab=97.84 E-value=9.3e-05 Score=67.54 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=33.4
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDT 168 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~ 168 (352)
+..+.-+.|+||||+|||.|+..++..+.. .+.+|+|++.
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~------~g~~v~f~~~ 142 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALIE------NGWRVLFTRT 142 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHHH------cCCceeeeeH
Confidence 446778999999999999999988877665 5678999875
No 475
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.83 E-value=8.9e-05 Score=64.96 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=25.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQL 152 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~ 152 (352)
....|+++.|.||+|+||||++..++..+.+
T Consensus 25 ~~~~~~~~~l~G~n~~GKstll~~i~~~~~l 55 (204)
T cd03282 25 TRGSSRFHIITGPNMSGKSTYLKQIALLAIM 55 (204)
T ss_pred eeCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999988765543
No 476
>PF05625 PAXNEB: PAXNEB protein; InterPro: IPR008728 The RNA polymerase II elongator complex is a major histone acetyltransferase component of the RNA polymerase II (RNAPII) holoenzyme and is involved in transcriptional elongation [, ]. It may also play some role in wobble uridine tRNA modification []. This entry represents the ELP4 subunit. ELP4 is not required for the association of the complex with nascent RNA transcript, but is required for complex integrity and histone acetyltransferase activity. It is also required for an early step in synthesis of 5-methoxycarbonylmethyl (mcm5) and 5-carbamoylmethyl (ncm5) groups present on uridines at the wobble position in tRNA in yeast species.; GO: 0006357 regulation of transcription from RNA polymerase II promoter, 0033588 Elongator holoenzyme complex; PDB: 4EJS_A 4A8J_A.
Probab=97.81 E-value=0.00024 Score=67.74 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhhc------CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHH--HhCcEEEEEccccc
Q 047388 206 QYNLLLGLAAKMSE------EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISE--EFNVAVYMTNQVIA 277 (352)
Q Consensus 206 ~~~~l~~l~~~l~~------~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~--~~~~~viv~~h~~~ 277 (352)
...++.++.+.+.. ..+-.|+|-++....+.... ..+ ...+.+++..|+.|.+ ..+++++++- ..
T Consensus 179 ~~~ll~~i~~~i~~~~~~~~~~v~RI~I~sl~SP~w~~~~----~~~-~~~ll~FL~~LR~LlR~~~s~~v~~iTl--P~ 251 (363)
T PF05625_consen 179 YRSLLQQIQQIISKSGFSPPSKVLRIVIPSLGSPLWYPPS----ASQ-PSELLRFLHSLRALLRKYSSNAVAMITL--PS 251 (363)
T ss_dssp HHHHHHHHHHHHHH----TTTSEEEEEETTTT-TTTS-GG----GGB-HHHHHHHHHHHHHHHHHTTTTEEEEEEE--EG
T ss_pred HHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCcccCCcc----ccc-HHHHHHHHHHHHHHHhccCCCEEEEEEE--CH
Confidence 34455555555543 36778899998876553221 111 1246799999999999 5555555553 22
Q ss_pred CCCCCcccCCCCCCCcchhhhhccceEEEEEeecCC------------eEEEEEEeCCCC
Q 047388 278 DPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGE------------QRVCKVFDAPNL 325 (352)
Q Consensus 278 ~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~------------~R~~~i~Ks~~~ 325 (352)
.. | . ..+..-..|+|.+|++|.|+-..+. .=.++|.|-|..
T Consensus 252 ~L----~-~--~~~~~~~~l~~l~D~vi~Le~F~~~~~~~~~~~~~~~~Gll~v~KLp~~ 304 (363)
T PF05625_consen 252 HL----Y-P--RSPSLVRRLEHLADGVIELESFAGSMEKETNPPFKDYHGLLHVHKLPRL 304 (363)
T ss_dssp TT----S------HHHHHHHHHHSSEEEEEEE--HHHHHTTT-GGG---EEEEEEE-TTH
T ss_pred HH----h-c--cChHHHHHHHHhCCEEEEeecCCCccccccCCcCcCCcEEEEEEEeccc
Confidence 11 1 0 0145567899999999999853221 246788886654
No 477
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=97.81 E-value=6.7e-05 Score=63.49 Aligned_cols=122 Identities=23% Similarity=0.240 Sum_probs=62.7
Q ss_pred EEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCCh---hhHHHHHHHcCCCcccccccEEEEecCCHHH
Q 047388 129 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRP---DRIVPIAERFGMDPGAVLDNIIYARAYTYEH 205 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~---~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 205 (352)
|.|.|...||||.|+.+++.. .+.+++|+.|-..++. +|+...-++.+. ++..+....
T Consensus 1 ilv~GG~rSGKS~~Ae~la~~---------~~~~~~YiAT~~~~D~em~~RI~~H~~~R~~-------~w~tiE~~~--- 61 (167)
T PF02283_consen 1 ILVTGGARSGKSSFAERLALS---------FGGPVTYIATARPFDEEMRERIARHRQRRPK-------GWITIEEPR--- 61 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHTS-----------SCEEEEESSHHHHHHHHHHHHHHHHHSST-------CEEEEE-SS---
T ss_pred CEEeCCCCcchHHHHHHHHHh---------cCCCcEEEeCCCCCCHHHHHHHHHHHHhCCC-------CcEEEecch---
Confidence 579999999999999998832 3578999999766543 233333333322 233322211
Q ss_pred HHHHHHHHHHHhhcC-CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 206 QYNLLLGLAAKMSEE-PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 206 ~~~~l~~l~~~l~~~-~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.+...+... ..+.|+||+++.+....+...... ......++.+.+..+.+...-.|||+|.+..
T Consensus 62 ------~l~~~~~~~~~~~~vLlDclt~wl~n~l~~~~~~--~~~~~~~i~~~l~~l~~~~~~lViVsnEVG~ 126 (167)
T PF02283_consen 62 ------DLAEALEELSPGDVVLLDCLTLWLANLLFAEEDD--EEDILEEIERLLEALRERNADLVIVSNEVGW 126 (167)
T ss_dssp -------GGGTS-TTS-T-EEEEE-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH--SEEEEEEE---S
T ss_pred ------hHHHHHHHhccCCeEEEeCHHHHHHHHHHhccCc--HHHHHHHHHHHHHHHHccCCCEEEEEcCCCC
Confidence 111222222 248999999999876543210000 1223345555555554544556667777765
No 478
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.81 E-value=0.00038 Score=61.56 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=23.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
-+.+|+-..|.|++|+|||||+.-++
T Consensus 53 ~V~~ge~W~I~G~NGsGKTTLL~ll~ 78 (257)
T COG1119 53 QVNPGEHWAIVGPNGAGKTTLLSLLT 78 (257)
T ss_pred eecCCCcEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999999998544
No 479
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.81 E-value=0.00011 Score=62.91 Aligned_cols=40 Identities=25% Similarity=0.262 Sum_probs=30.6
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
..+.-+.|.|++|+|||.|+..++..+.. .+.+|+|++..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~------~g~~v~f~~~~ 84 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR------KGYSVLFITAS 84 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH------TT--EEEEEHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc------CCcceeEeecC
Confidence 45667999999999999999999887776 67889998764
No 480
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.80 E-value=0.00013 Score=63.14 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=33.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
-++.|+++.|.|.+|+|||||+..++..... .++-++|+..+
T Consensus 28 ~I~~g~FvtViGsNGAGKSTlln~iaG~l~~-------t~G~I~Idg~d 69 (263)
T COG1101 28 EIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP-------TSGQILIDGVD 69 (263)
T ss_pred eecCCceEEEEcCCCccHHHHHHHhhCcccc-------CCceEEECcee
Confidence 5889999999999999999999988766554 34456676654
No 481
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=97.80 E-value=0.00017 Score=73.80 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=28.4
Q ss_pred hHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 115 LDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 115 LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
|+. +.+-+++|+++.|.||+|+|||||+..++..
T Consensus 41 L~~-vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~ 74 (617)
T TIGR00955 41 LKN-VSGVAKPGELLAVMGSSGAGKTTLMNALAFR 74 (617)
T ss_pred ccC-CEEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 444 3478999999999999999999999977643
No 482
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.80 E-value=9.2e-05 Score=71.61 Aligned_cols=116 Identities=19% Similarity=0.166 Sum_probs=68.4
Q ss_pred cccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhH-HHHHHHc
Q 047388 106 IKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRI-VPIAERF 184 (352)
Q Consensus 106 ~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl-~~~~~~~ 184 (352)
..+.||+..+|.++ -+.+|+.+.|+|++|+|||+|+..++.+... ...++.+..+...+..++ ...+...
T Consensus 138 ~~l~TGiraID~ll--~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~-------~~gvI~~iGerg~ev~e~~~~~l~~~ 208 (432)
T PRK06793 138 DVFETGIKSIDSML--TIGIGQKIGIFAGSGVGKSTLLGMIAKNAKA-------DINVISLVGERGREVKDFIRKELGEE 208 (432)
T ss_pred hccCCCCEEEeccc--eecCCcEEEEECCCCCChHHHHHHHhccCCC-------CeEEEEeCCCCcccHHHHHHHHhhhc
Confidence 46889999999976 6789999999999999999999888765432 334555555554333222 2223222
Q ss_pred CCCcccccccEEEEecCCHHHHHHH-----HHHHH-HHhhcCCceEEEEcccccchh
Q 047388 185 GMDPGAVLDNIIYARAYTYEHQYNL-----LLGLA-AKMSEEPFRLLIVDSVIALFR 235 (352)
Q Consensus 185 ~~~~~~~~~~i~~~~~~~~~~~~~~-----l~~l~-~~l~~~~~~lvvIDsl~~l~~ 235 (352)
++. ..+.+....+....... -..+. .+..+.+.-++++|+++.+..
T Consensus 209 gl~-----~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~ 260 (432)
T PRK06793 209 GMR-----KSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFAD 260 (432)
T ss_pred ccc-----eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHH
Confidence 321 12333332222111111 11222 233344778889999998754
No 483
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.80 E-value=0.00013 Score=65.48 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=30.9
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
+..+.|+||+|+|||+|+..++..... .+.++.|++.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~------~~~~v~y~~~~ 82 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQ------RGRAVGYVPLD 82 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEEHH
Confidence 457899999999999999988776554 46788898765
No 484
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=0.00043 Score=65.89 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=56.3
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCC---hhhHHHHHHHcCCCcccccccEEEEecCC
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFR---PDRIVPIAERFGMDPGAVLDNIIYARAYT 202 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~---~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 202 (352)
..++.|+|++|+||||++..+|..... .+.+|.+++++. +. .+.++..++..++ .+....+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~------~GkkVglI~aDt-~RiaAvEQLk~yae~lgi---------pv~v~~d 304 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHG------KKKTVGFITTDH-SRIGTVQQLQDYVKTIGF---------EVIAVRD 304 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHH------cCCcEEEEecCC-cchHHHHHHHHHhhhcCC---------cEEecCC
Confidence 468999999999999999999887654 567899998864 22 2233333333332 2232334
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEcccccch
Q 047388 203 YEHQYNLLLGLAAKMSEEPFRLLIVDSVIALF 234 (352)
Q Consensus 203 ~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~ 234 (352)
...+.+.+.. .-...+.++|+||......
T Consensus 305 ~~~L~~aL~~---lk~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 305 EAAMTRALTY---FKEEARVDYILIDTAGKNY 333 (436)
T ss_pred HHHHHHHHHH---HHhccCCCEEEEeCccccC
Confidence 4444333332 2112368999999877653
No 485
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00016 Score=64.00 Aligned_cols=120 Identities=22% Similarity=0.326 Sum_probs=75.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
|+.+-.=++++||||||||.|+...|.+. ..-||-.-++ +-+. +-+|-.|
T Consensus 185 gidpprgvllygppg~gktml~kava~~t-----------~a~firvvgs---efvq---kylgegp------------- 234 (408)
T KOG0727|consen 185 GIDPPRGVLLYGPPGTGKTMLAKAVANHT-----------TAAFIRVVGS---EFVQ---KYLGEGP------------- 234 (408)
T ss_pred CCCCCcceEEeCCCCCcHHHHHHHHhhcc-----------chheeeeccH---HHHH---HHhccCc-------------
Confidence 67777778999999999999999766432 2334433322 1111 1123222
Q ss_pred CHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCC-cchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGR-GELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 202 ~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~-g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.+...+.+...+..|.+++||.+.++....+... |.-.+-|+.+.++++.+..+-...|+-||+.+.-..
T Consensus 235 ------rmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnrad 305 (408)
T KOG0727|consen 235 ------RMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD 305 (408)
T ss_pred ------HHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc
Confidence 1223344455566899999999988876555422 333455666777888887777778888888765433
No 486
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.79 E-value=7.7e-05 Score=65.83 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=21.3
Q ss_pred CCCcEEEEecCCCCChhHHHHHHH
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
..|+++.|.|++|+|||||+..++
T Consensus 26 ~~~~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 26 DNNGLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred CccCEEEEECCCCCCHHHHHHHhe
Confidence 448899999999999999998765
No 487
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.79 E-value=0.00018 Score=65.38 Aligned_cols=122 Identities=17% Similarity=0.174 Sum_probs=71.4
Q ss_pred hcccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHH
Q 047388 103 KAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAE 182 (352)
Q Consensus 103 ~~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~ 182 (352)
...+.+.||+..+|-++ -+-+|+-..|+|++|+|||+|+.+++.+.... ....++|...-.. .+.+.++.+
T Consensus 48 ~~~e~L~TGIr~ID~l~--pig~GQr~~If~~~G~GKTtLa~~i~~~i~~~-----~~~~~V~~~iGer--~~Ev~e~~~ 118 (274)
T cd01133 48 TKTEILETGIKVIDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNIAKA-----HGGYSVFAGVGER--TREGNDLYH 118 (274)
T ss_pred CcCcccccCceeeeccC--CcccCCEEEEecCCCCChhHHHHHHHHHHHhc-----CCCEEEEEEeccC--cHHHHHHHH
Confidence 34467999999999877 57799999999999999999999998887642 2344555543322 233444444
Q ss_pred HcCCCccccccc-EEEEecCCH--HHHHHH---HHHHHHHhhcC-Cce-EEEEcccccchh
Q 047388 183 RFGMDPGAVLDN-IIYARAYTY--EHQYNL---LLGLAAKMSEE-PFR-LLIVDSVIALFR 235 (352)
Q Consensus 183 ~~~~~~~~~~~~-i~~~~~~~~--~~~~~~---l~~l~~~l~~~-~~~-lvvIDsl~~l~~ 235 (352)
.+. ....+++ +.+....+. ...... -..+.+.+... +-+ ++++||++.+..
T Consensus 119 ~~~--~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~ 177 (274)
T cd01133 119 EMK--ESGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQ 177 (274)
T ss_pred HHH--hcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeChhHHHH
Confidence 331 1123344 333322221 111111 11233344332 444 567799998754
No 488
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.78 E-value=0.00012 Score=71.13 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=45.7
Q ss_pred cccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC
Q 047388 104 AVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 104 ~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~ 171 (352)
..+.+.||+..+|.++ -+.+|+.+.|+|++|+|||+|+.+++..... ...++.+..|..
T Consensus 143 i~e~l~TGi~~ID~l~--~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~-------d~~vi~~iGer~ 201 (441)
T PRK09099 143 VEAPLPTGVRIVDGLM--TLGEGQRMGIFAPAGVGKSTLMGMFARGTQC-------DVNVIALIGERG 201 (441)
T ss_pred cccccCCCceecccee--eecCCCEEEEECCCCCCHHHHHHHHhCCCCC-------CeEEEEEEccCh
Confidence 3467999999999986 5779999999999999999999988765432 234555556554
No 489
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=7.3e-05 Score=73.54 Aligned_cols=119 Identities=17% Similarity=0.223 Sum_probs=71.2
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEec
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARA 200 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 200 (352)
-|+.|-.=++|.||||||||.|+..+|.....| |+.-.. ++ +. -|+.-
T Consensus 218 lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-----------f~~isA---pe----iv--SGvSG------------ 265 (802)
T KOG0733|consen 218 LGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-----------FLSISA---PE----IV--SGVSG------------ 265 (802)
T ss_pred cCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-----------eEeecc---hh----hh--cccCc------------
Confidence 377777778999999999999999888664442 333221 11 00 01111
Q ss_pred CCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHH--hCcEEEEEccccc
Q 047388 201 YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEE--FNVAVYMTNQVIA 277 (352)
Q Consensus 201 ~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~--~~~~viv~~h~~~ 277 (352)
-+...+.+ +........|.+|+||.|.++-+..-....+|.. +.+.+++..|-.+..+ .|..|+++.-+++
T Consensus 266 ESEkkiRe----lF~~A~~~aPcivFiDeIDAI~pkRe~aqreMEr--RiVaQLlt~mD~l~~~~~~g~~VlVIgATnR 338 (802)
T KOG0733|consen 266 ESEKKIRE----LFDQAKSNAPCIVFIDEIDAITPKREEAQREMER--RIVAQLLTSMDELSNEKTKGDPVLVIGATNR 338 (802)
T ss_pred ccHHHHHH----HHHHHhccCCeEEEeecccccccchhhHHHHHHH--HHHHHHHHhhhcccccccCCCCeEEEecCCC
Confidence 11122223 3333445679999999999996643222223333 3456777777766544 3677888877665
No 490
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.77 E-value=0.00013 Score=64.07 Aligned_cols=45 Identities=7% Similarity=0.084 Sum_probs=31.9
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHH-HHHHHHHHHHHHhCcEEEEEcccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLG-QMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~-~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.+++++++|++...+.. .. .. .+.+.|++++++.+.+||+++|..
T Consensus 138 ~~p~illlDEP~~~LD~--------~~----~~~~l~~~l~~~~~~~~~~iiiitH~~ 183 (204)
T cd03240 138 SNCGILALDEPTTNLDE--------EN----IEESLAEIIEERKSQKNFQLIVITHDE 183 (204)
T ss_pred cCCCEEEEcCCccccCH--------HH----HHHHHHHHHHHHHhccCCEEEEEEecH
Confidence 37899999998876432 11 13 566667777766688999999964
No 491
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.77 E-value=3.6e-05 Score=66.41 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=21.1
Q ss_pred EEEEecCCCCChhHHHHHHHHHhcC
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQL 152 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~~ 152 (352)
++.|+|++|+|||||+.+++....+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~l 25 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIM 25 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3679999999999999999866543
No 492
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.76 E-value=3.2e-05 Score=68.71 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=25.0
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhc
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQ 151 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~ 151 (352)
.+.++++.|+||+|+|||+++.+++....
T Consensus 27 ~~~~~~~~l~G~n~~GKstll~~i~~~~~ 55 (222)
T cd03285 27 RGKSRFLIITGPNMGGKSTYIRQIGVIVL 55 (222)
T ss_pred ecCCeEEEEECCCCCChHHHHHHHHHHHH
Confidence 45789999999999999999998886644
No 493
>PRK06526 transposase; Provisional
Probab=97.76 E-value=0.00015 Score=65.78 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=32.1
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDT 168 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~ 168 (352)
+..+.-+.|+||||+|||+|+..++..++. .+.+|+|++.
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~------~g~~v~f~t~ 134 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQ------AGHRVLFATA 134 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHH------CCCchhhhhH
Confidence 456778999999999999999998877665 5667777543
No 494
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=97.76 E-value=0.00019 Score=65.11 Aligned_cols=121 Identities=14% Similarity=0.177 Sum_probs=68.6
Q ss_pred hcccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHH
Q 047388 103 KAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAE 182 (352)
Q Consensus 103 ~~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~ 182 (352)
...+.+.||+..+|-++ -+-+|+-..|+|++|+|||+|+++...+... .+..++|...-.. .+.+.++.+
T Consensus 48 ~i~e~L~TGI~~ID~l~--pigrGQr~~Ifg~~g~GKt~L~l~~i~~~~~------~~v~~V~~~iGer--~~ev~e~~~ 117 (274)
T cd01132 48 SVNEPLQTGIKAIDAMI--PIGRGQRELIIGDRQTGKTAIAIDTIINQKG------KKVYCIYVAIGQK--ASTVAQVVK 117 (274)
T ss_pred CcccccccCCEEeeccC--CcccCCEEEeeCCCCCCccHHHHHHHHHhcC------CCeEEEEEecccc--hHHHHHHHH
Confidence 34567999999999877 5779999999999999999997654444322 3445567654332 233444444
Q ss_pred HcCCCccccccc-EEEEecCCHHHHHHH-----HHHHHHHhhcCCc-eEEEEcccccchh
Q 047388 183 RFGMDPGAVLDN-IIYARAYTYEHQYNL-----LLGLAAKMSEEPF-RLLIVDSVIALFR 235 (352)
Q Consensus 183 ~~~~~~~~~~~~-i~~~~~~~~~~~~~~-----l~~l~~~l~~~~~-~lvvIDsl~~l~~ 235 (352)
.+.- ...+++ +.+....+..-.... -..+.+.+...+- =+|++||++.+..
T Consensus 118 ~~~~--~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~ 175 (274)
T cd01132 118 TLEE--HGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAV 175 (274)
T ss_pred HHHh--cCccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHH
Confidence 3311 112234 333322221111111 1123334444433 4667899998743
No 495
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.75 E-value=0.00014 Score=76.07 Aligned_cols=116 Identities=19% Similarity=0.209 Sum_probs=64.3
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEec
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARA 200 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 200 (352)
-|++++.-+.|+||||+|||+|+..++... +...++++...- ...+ +
T Consensus 207 ~gi~~~~giLL~GppGtGKT~laraia~~~---------~~~~i~i~~~~i---------~~~~------------~--- 253 (733)
T TIGR01243 207 LGIEPPKGVLLYGPPGTGKTLLAKAVANEA---------GAYFISINGPEI---------MSKY------------Y--- 253 (733)
T ss_pred cCCCCCceEEEECCCCCChHHHHHHHHHHh---------CCeEEEEecHHH---------hccc------------c---
Confidence 378888999999999999999999887643 334555553211 0000 0
Q ss_pred CCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcc
Q 047388 201 YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQ 274 (352)
Q Consensus 201 ~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h 274 (352)
......+..+.+......+.+|+||++..+....-...+++..+ .+..++..|..+....++.||.+++
T Consensus 254 ---g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~--~~~~Ll~~ld~l~~~~~vivI~atn 322 (733)
T TIGR01243 254 ---GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKR--VVAQLLTLMDGLKGRGRVIVIGATN 322 (733)
T ss_pred ---cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHH--HHHHHHHHhhccccCCCEEEEeecC
Confidence 00011122222233345678999999988865422222233322 2345656565554444555554444
No 496
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=97.75 E-value=9.8e-05 Score=63.02 Aligned_cols=50 Identities=26% Similarity=0.368 Sum_probs=34.5
Q ss_pred CChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEe
Q 047388 111 GSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYID 167 (352)
Q Consensus 111 G~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~ 167 (352)
|+..|+++- =-+.+|++-.|.||+|+|||||+-.+...... ..++|+|-+
T Consensus 17 GF~Aln~ls-~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp------~~G~v~f~g 66 (249)
T COG4674 17 GFKALNDLS-FSVDPGELRVLIGPNGAGKTTLMDVITGKTRP------QEGEVLFDG 66 (249)
T ss_pred ceeeeeeeE-EEecCCeEEEEECCCCCCceeeeeeecccCCC------CcceEEEcC
Confidence 445555532 35789999999999999999999866544332 345555544
No 497
>PRK13768 GTPase; Provisional
Probab=97.75 E-value=0.00029 Score=63.90 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=32.4
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~ 171 (352)
.++.+.|++|+||||++.+++..... .+.+|+.++.+..
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~------~g~~v~~i~~D~~ 41 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEE------QGYDVAIVNLDPA 41 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHh------cCCceEEEECCCc
Confidence 47899999999999999999887765 5778999887643
No 498
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.75 E-value=0.00013 Score=70.44 Aligned_cols=28 Identities=32% Similarity=0.326 Sum_probs=23.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
|+++-.-++|+||||+|||+++..++..
T Consensus 161 g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 161 GIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 5656666899999999999999988765
No 499
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00023 Score=70.14 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=73.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
|+..-.=++++||||||||.|+...|. ..+.=||+-.++ +-+.+ ++
T Consensus 541 Gi~~PsGvLL~GPPGCGKTLlAKAVAN-----------Eag~NFisVKGP---ELlNk----------------YV---- 586 (802)
T KOG0733|consen 541 GIDAPSGVLLCGPPGCGKTLLAKAVAN-----------EAGANFISVKGP---ELLNK----------------YV---- 586 (802)
T ss_pred CCCCCCceEEeCCCCccHHHHHHHHhh-----------hccCceEeecCH---HHHHH----------------Hh----
Confidence 555555589999999999999996653 233446666653 32211 11
Q ss_pred CHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccc
Q 047388 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQV 275 (352)
Q Consensus 202 ~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~ 275 (352)
.+-...+.++.+..+...|.+|++|.+.++.+..-.+..+.+. +.+.+++..|-.+-.+.|+.||..+.-
T Consensus 587 --GESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~--RvvNqLLtElDGl~~R~gV~viaATNR 656 (802)
T KOG0733|consen 587 --GESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSS--RVVNQLLTELDGLEERRGVYVIAATNR 656 (802)
T ss_pred --hhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHH--HHHHHHHHHhcccccccceEEEeecCC
Confidence 1112223333334444579999999999998753322222333 457789999999988888888876543
No 500
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.74 E-value=0.00026 Score=68.81 Aligned_cols=44 Identities=25% Similarity=0.274 Sum_probs=38.1
Q ss_pred cccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 104 AVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 104 ~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-.+.+.||+..+|.++ -+.+|+.+.|+|++|+|||+|+..++..
T Consensus 125 i~~~l~tG~~~id~l~--~i~~Gq~~~I~G~sG~GKStLl~~I~~~ 168 (422)
T TIGR02546 125 IDQPLPTGVRAIDGLL--TCGEGQRIGIFAGAGVGKSTLLGMIARG 168 (422)
T ss_pred cccccCCCceeehhhc--cccCCCEEEEECCCCCChHHHHHHHhCC
Confidence 3457999999999986 6789999999999999999998877654
Done!