Query 047388
Match_columns 352
No_of_seqs 342 out of 3037
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 18:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lda_A DNA repair protein RAD5 100.0 6.7E-57 2.3E-61 430.6 32.1 325 20-352 72-397 (400)
2 1v5w_A DMC1, meiotic recombina 100.0 1.1E-55 3.8E-60 416.6 26.2 334 11-352 7-343 (343)
3 2z43_A DNA repair and recombin 100.0 5.4E-53 1.8E-57 395.6 26.4 313 28-352 11-324 (324)
4 2i1q_A DNA repair and recombin 100.0 2.3E-51 7.7E-56 384.5 29.3 307 31-349 5-322 (322)
5 1pzn_A RAD51, DNA repair and r 100.0 2.5E-50 8.4E-55 380.6 29.5 312 26-349 32-349 (349)
6 1n0w_A DNA repair protein RAD5 100.0 3.8E-38 1.3E-42 282.1 24.5 241 104-352 2-243 (243)
7 4a74_A DNA repair and recombin 100.0 4E-34 1.4E-38 253.8 24.0 224 104-349 3-231 (231)
8 3hr8_A Protein RECA; alpha and 100.0 3.5E-33 1.2E-37 262.2 21.9 219 105-349 39-272 (356)
9 2cvh_A DNA repair and recombin 100.0 4.5E-32 1.5E-36 238.9 22.1 219 107-351 1-220 (220)
10 3io5_A Recombination and repai 100.0 1.9E-31 6.6E-36 243.3 22.4 220 104-349 3-243 (333)
11 1u94_A RECA protein, recombina 100.0 2.6E-31 8.8E-36 250.4 21.6 219 103-348 39-273 (356)
12 3cmu_A Protein RECA, recombina 100.0 1.5E-31 5.2E-36 291.8 21.1 265 56-350 655-944 (2050)
13 2zr9_A Protein RECA, recombina 100.0 1E-30 3.4E-35 246.2 22.5 220 103-349 37-272 (349)
14 1xp8_A RECA protein, recombina 100.0 8.6E-31 3E-35 247.5 21.8 220 103-348 50-285 (366)
15 2zts_A Putative uncharacterize 100.0 7.9E-31 2.7E-35 235.3 16.9 217 103-348 7-243 (251)
16 2dr3_A UPF0273 protein PH0284; 100.0 5.9E-28 2E-32 216.1 19.0 211 106-350 3-234 (247)
17 3cmu_A Protein RECA, recombina 100.0 1.1E-27 3.6E-32 261.8 21.4 280 39-348 286-593 (2050)
18 3cmw_A Protein RECA, recombina 100.0 1.6E-27 5.6E-32 258.1 22.4 220 103-348 359-593 (1706)
19 3bh0_A DNAB-like replicative h 99.9 1.1E-26 3.6E-31 216.3 20.5 212 104-331 47-295 (315)
20 3cmw_A Protein RECA, recombina 99.9 8.6E-27 3E-31 252.5 22.1 246 77-348 679-942 (1706)
21 1q57_A DNA primase/helicase; d 99.9 5.8E-26 2E-30 224.4 21.2 228 89-330 199-467 (503)
22 2q6t_A DNAB replication FORK h 99.9 9.1E-26 3.1E-30 219.6 20.2 212 105-331 180-427 (444)
23 4a1f_A DNAB helicase, replicat 99.9 3.9E-26 1.3E-30 212.8 12.4 210 103-331 24-304 (338)
24 3bgw_A DNAB-like replicative h 99.9 3E-25 1E-29 215.3 18.8 211 104-331 176-424 (444)
25 2w0m_A SSO2452; RECA, SSPF, un 99.9 1.7E-24 5.7E-29 191.8 20.2 207 106-349 3-229 (235)
26 2r6a_A DNAB helicase, replicat 99.9 9.6E-25 3.3E-29 213.0 18.0 208 105-331 183-428 (454)
27 2ehv_A Hypothetical protein PH 99.9 2E-22 6.8E-27 180.5 20.1 216 104-349 8-244 (251)
28 1cr0_A DNA primase/helicase; R 99.9 1.1E-21 3.6E-26 180.9 19.9 227 103-351 12-276 (296)
29 1tf7_A KAIC; homohexamer, hexa 99.9 3.8E-21 1.3E-25 190.8 19.4 209 105-348 260-478 (525)
30 1nlf_A Regulatory protein REPA 99.8 3.3E-20 1.1E-24 169.4 17.0 220 106-349 11-261 (279)
31 3bs4_A Uncharacterized protein 99.8 5.4E-19 1.9E-23 158.5 18.0 208 107-345 2-246 (260)
32 1b22_A DNA repair protein RAD5 99.7 1.2E-18 4E-23 135.6 5.9 112 9-120 3-114 (114)
33 1tf7_A KAIC; homohexamer, hexa 99.7 1.7E-16 5.9E-21 157.3 20.4 214 104-348 17-245 (525)
34 2vhj_A Ntpase P4, P4; non- hyd 99.5 4.7E-15 1.6E-19 136.0 4.6 130 107-276 105-236 (331)
35 3gfo_A Cobalt import ATP-bindi 99.0 5.4E-10 1.9E-14 101.2 6.1 150 122-309 30-219 (275)
36 3tui_C Methionine import ATP-b 98.9 6.6E-09 2.2E-13 97.4 11.7 136 122-277 50-225 (366)
37 3tif_A Uncharacterized ABC tra 98.9 1.3E-08 4.6E-13 90.0 12.9 59 220-309 162-220 (235)
38 1g6h_A High-affinity branched- 98.9 9.8E-09 3.3E-13 92.1 10.8 59 220-309 170-228 (257)
39 2b8t_A Thymidine kinase; deoxy 98.9 5E-09 1.7E-13 91.7 8.3 143 124-310 10-152 (223)
40 4g1u_C Hemin import ATP-bindin 98.8 7.4E-09 2.5E-13 93.3 9.0 59 221-309 165-223 (266)
41 2pcj_A ABC transporter, lipopr 98.8 2.8E-08 9.4E-13 87.3 11.4 44 220-276 157-200 (224)
42 2olj_A Amino acid ABC transpor 98.8 1.1E-08 3.6E-13 92.1 8.6 149 122-309 46-234 (263)
43 3rlf_A Maltose/maltodextrin im 98.8 4.5E-09 1.5E-13 99.1 5.4 44 221-276 151-194 (381)
44 3fvq_A Fe(3+) IONS import ATP- 98.7 1.6E-09 5.5E-14 101.4 1.5 45 220-276 155-199 (359)
45 2it1_A 362AA long hypothetical 98.7 1.4E-08 4.7E-13 95.4 6.7 45 220-276 150-194 (362)
46 1vpl_A ABC transporter, ATP-bi 98.7 4.9E-08 1.7E-12 87.4 10.0 26 122-147 37-62 (256)
47 2nq2_C Hypothetical ABC transp 98.7 8.6E-08 2.9E-12 85.7 11.5 135 122-277 27-190 (253)
48 1b0u_A Histidine permease; ABC 98.7 3.4E-08 1.2E-12 88.8 8.8 58 221-309 171-228 (262)
49 1v43_A Sugar-binding transport 98.7 1.6E-08 5.4E-13 95.3 6.7 43 221-275 159-201 (372)
50 1z47_A CYSA, putative ABC-tran 98.7 1.4E-08 4.8E-13 95.0 6.2 45 220-276 162-206 (355)
51 2yyz_A Sugar ABC transporter, 98.7 8E-09 2.7E-13 96.9 4.1 45 220-276 150-194 (359)
52 1ji0_A ABC transporter; ATP bi 98.7 2.5E-08 8.6E-13 88.5 7.0 59 220-309 156-214 (240)
53 3d31_A Sulfate/molybdate ABC t 98.7 6.5E-08 2.2E-12 90.3 9.2 45 220-276 144-188 (348)
54 1g29_1 MALK, maltose transport 98.6 2E-08 6.9E-13 94.7 5.3 44 220-275 156-199 (372)
55 1oxx_K GLCV, glucose, ABC tran 98.6 1.1E-08 3.9E-13 95.7 3.6 45 220-276 157-201 (353)
56 1sgw_A Putative ABC transporte 98.6 4.1E-07 1.4E-11 79.1 12.5 45 220-277 150-194 (214)
57 2yz2_A Putative ABC transporte 98.6 1.1E-06 3.6E-11 79.2 15.6 45 220-277 155-199 (266)
58 4gp7_A Metallophosphoesterase; 98.6 1E-07 3.4E-12 80.0 8.0 23 123-145 6-28 (171)
59 2ihy_A ABC transporter, ATP-bi 98.6 4.7E-08 1.6E-12 88.6 6.2 45 220-277 178-224 (279)
60 2ff7_A Alpha-hemolysin translo 98.6 1.4E-07 4.8E-12 84.0 8.8 26 122-147 31-56 (247)
61 2qi9_C Vitamin B12 import ATP- 98.6 4.9E-08 1.7E-12 87.1 5.3 26 122-147 22-47 (249)
62 2kz3_A Putative uncharacterize 98.6 1.3E-07 4.4E-12 68.8 6.4 65 37-101 10-74 (83)
63 2onk_A Molybdate/tungstate ABC 98.6 1.4E-07 4.8E-12 83.6 8.0 60 220-309 143-202 (240)
64 3nh6_A ATP-binding cassette SU 98.5 1.4E-07 4.6E-12 86.6 6.4 26 122-147 76-101 (306)
65 2ixe_A Antigen peptide transpo 98.5 2.3E-07 7.8E-12 83.8 7.8 45 221-277 174-218 (271)
66 2kjq_A DNAA-related protein; s 98.5 8.4E-07 2.9E-11 72.6 10.5 40 125-170 35-74 (149)
67 1c9k_A COBU, adenosylcobinamid 98.5 4.9E-07 1.7E-11 76.2 9.2 126 128-277 1-138 (180)
68 1mv5_A LMRA, multidrug resista 98.5 7E-08 2.4E-12 85.8 4.1 27 122-148 24-50 (243)
69 3ec2_A DNA replication protein 98.5 1.6E-07 5.3E-12 79.2 6.0 43 122-169 34-76 (180)
70 3ozx_A RNAse L inhibitor; ATP 98.5 2.4E-06 8.2E-11 84.4 14.8 138 123-277 291-447 (538)
71 3bk7_A ABC transporter ATP-bin 98.4 1.9E-06 6.4E-11 86.4 13.8 133 123-276 379-532 (607)
72 1yqt_A RNAse L inhibitor; ATP- 98.4 1.5E-06 5.1E-11 86.0 12.4 138 123-277 309-463 (538)
73 1yqt_A RNAse L inhibitor; ATP- 98.4 2.2E-06 7.5E-11 84.8 12.3 44 220-276 175-218 (538)
74 2d2e_A SUFC protein; ABC-ATPas 98.4 1E-06 3.5E-11 78.5 8.5 27 122-148 25-51 (250)
75 3j16_B RLI1P; ribosome recycli 98.3 4.1E-06 1.4E-10 83.8 13.3 135 121-277 373-529 (608)
76 3b5x_A Lipid A export ATP-bind 98.3 7.6E-07 2.6E-11 89.0 8.0 27 122-148 365-391 (582)
77 2zu0_C Probable ATP-dependent 98.3 3.6E-07 1.2E-11 82.3 5.0 27 122-148 42-68 (267)
78 2yhs_A FTSY, cell division pro 98.3 2.1E-05 7.3E-10 76.2 17.4 85 70-169 238-330 (503)
79 4b4t_J 26S protease regulatory 98.3 2.8E-06 9.5E-11 80.4 10.8 118 122-275 178-296 (405)
80 1j8m_F SRP54, signal recogniti 98.3 1E-05 3.4E-10 73.9 14.2 138 70-233 39-192 (297)
81 1rj9_A FTSY, signal recognitio 98.3 1.2E-05 4E-10 73.7 14.3 39 125-169 101-139 (304)
82 3bk7_A ABC transporter ATP-bin 98.3 4.3E-06 1.5E-10 83.8 11.8 44 220-276 245-288 (607)
83 3gd7_A Fusion complex of cysti 98.3 5.8E-07 2E-11 85.1 5.1 27 122-148 43-69 (390)
84 2ghi_A Transport protein; mult 98.3 9.9E-06 3.4E-10 72.5 12.8 27 122-148 42-68 (260)
85 2cbz_A Multidrug resistance-as 98.3 2.7E-06 9.3E-11 75.1 8.8 26 122-147 27-52 (237)
86 2pze_A Cystic fibrosis transme 98.3 1.6E-06 5.6E-11 76.1 7.3 26 122-147 30-55 (229)
87 4b4t_K 26S protease regulatory 98.2 4.1E-06 1.4E-10 80.1 10.2 119 122-276 202-321 (428)
88 1u9l_A Transcription elongatio 98.2 2.1E-06 7.1E-11 60.3 6.0 55 35-89 10-64 (70)
89 3b60_A Lipid A export ATP-bind 98.2 1.1E-06 3.9E-11 87.8 6.1 27 122-148 365-391 (582)
90 2pjz_A Hypothetical protein ST 98.2 5E-06 1.7E-10 74.6 9.7 26 122-148 27-52 (263)
91 3qf4_A ABC transporter, ATP-bi 98.2 1.4E-06 4.9E-11 87.1 6.8 42 122-170 365-406 (587)
92 4a8j_A Elongator complex prote 98.2 6E-06 2.1E-10 76.4 10.1 103 207-325 201-324 (361)
93 2yl4_A ATP-binding cassette SU 98.2 1.5E-06 5.1E-11 87.1 6.5 27 122-148 366-392 (595)
94 1wcn_A Transcription elongatio 98.2 3E-06 1E-10 59.6 6.2 55 30-86 8-62 (70)
95 3h4m_A Proteasome-activating n 98.2 9.1E-06 3.1E-10 73.3 11.1 119 122-276 47-166 (285)
96 3b9q_A Chloroplast SRP recepto 98.2 2.2E-05 7.7E-10 71.8 13.8 44 123-173 97-140 (302)
97 4b4t_L 26S protease subunit RP 98.2 7.4E-06 2.5E-10 78.5 10.9 118 121-274 210-328 (437)
98 3qf4_B Uncharacterized ABC tra 98.2 1.9E-06 6.5E-11 86.4 7.2 26 122-147 377-402 (598)
99 3j16_B RLI1P; ribosome recycli 98.2 1E-05 3.5E-10 80.9 12.4 27 122-148 99-125 (608)
100 3e70_C DPA, signal recognition 98.2 1.2E-05 4.2E-10 74.3 11.8 56 124-186 127-185 (328)
101 4b4t_M 26S protease regulatory 98.2 4.7E-06 1.6E-10 79.8 8.9 121 121-277 210-331 (434)
102 3kl4_A SRP54, signal recogniti 98.1 7E-05 2.4E-09 71.7 16.8 93 125-233 96-191 (433)
103 3ozx_A RNAse L inhibitor; ATP 98.1 1.2E-05 4.1E-10 79.4 11.7 25 123-147 22-46 (538)
104 4b4t_I 26S protease regulatory 98.1 9.6E-06 3.3E-10 77.1 10.4 123 121-279 211-334 (437)
105 2orw_A Thymidine kinase; TMTK, 98.1 9.3E-07 3.2E-11 75.0 3.0 113 125-277 2-114 (184)
106 2og2_A Putative signal recogni 98.1 2.9E-05 9.8E-10 72.7 13.3 41 123-169 154-194 (359)
107 2bbs_A Cystic fibrosis transme 98.1 1.5E-05 5.2E-10 72.4 11.1 46 122-169 60-107 (290)
108 4a82_A Cystic fibrosis transme 98.1 2.4E-06 8.4E-11 85.3 5.5 26 122-147 363-388 (578)
109 4b4t_H 26S protease regulatory 98.1 1.4E-05 4.7E-10 76.7 10.1 118 121-274 238-356 (467)
110 3jvv_A Twitching mobility prot 98.0 9.6E-06 3.3E-10 75.9 7.0 29 123-151 120-148 (356)
111 2eyu_A Twitching motility prot 98.0 3.4E-05 1.1E-09 69.1 10.2 35 113-150 15-49 (261)
112 1xwi_A SKD1 protein; VPS4B, AA 98.0 3.8E-05 1.3E-09 70.9 10.9 117 121-274 40-157 (322)
113 2iw3_A Elongation factor 3A; a 98.0 4.6E-05 1.6E-09 79.7 12.5 133 122-277 457-606 (986)
114 3ux8_A Excinuclease ABC, A sub 98.0 1.9E-05 6.4E-10 80.3 9.4 44 221-277 564-607 (670)
115 1fnn_A CDC6P, cell division co 97.9 0.00013 4.3E-09 68.4 14.1 119 128-276 46-169 (389)
116 4f4c_A Multidrug resistance pr 97.9 7.6E-06 2.6E-10 89.1 6.2 27 122-148 440-466 (1321)
117 4f4c_A Multidrug resistance pr 97.9 3.7E-06 1.3E-10 91.5 3.7 26 122-147 1101-1126(1321)
118 2obl_A ESCN; ATPase, hydrolase 97.9 7.6E-05 2.6E-09 69.6 11.5 43 106-150 53-95 (347)
119 3bos_A Putative DNA replicatio 97.9 3E-05 1E-09 67.5 8.2 48 115-170 43-90 (242)
120 3ux8_A Excinuclease ABC, A sub 97.9 4.1E-05 1.4E-09 77.8 10.3 42 222-276 223-264 (670)
121 3thx_B DNA mismatch repair pro 97.9 1.9E-05 6.6E-10 82.3 7.9 28 123-150 670-697 (918)
122 3cf2_A TER ATPase, transitiona 97.9 3.6E-05 1.2E-09 79.1 9.3 117 121-275 233-349 (806)
123 3dm5_A SRP54, signal recogniti 97.9 0.00016 5.3E-09 69.4 13.1 93 125-233 99-194 (443)
124 2ce7_A Cell division protein F 97.8 7.6E-05 2.6E-09 72.4 10.6 118 122-277 47-165 (476)
125 1xx6_A Thymidine kinase; NESG, 97.8 2.7E-05 9.3E-10 66.3 6.5 138 124-309 6-143 (191)
126 1vma_A Cell division protein F 97.8 4.2E-05 1.4E-09 70.0 8.1 42 123-170 101-142 (306)
127 3g5u_A MCG1178, multidrug resi 97.8 2.1E-05 7.2E-10 85.4 7.1 41 122-169 412-452 (1284)
128 2j9r_A Thymidine kinase; TK1, 97.8 3.4E-05 1.2E-09 66.5 6.8 138 124-309 26-163 (214)
129 3eie_A Vacuolar protein sortin 97.8 4E-05 1.4E-09 70.7 7.6 116 121-274 46-162 (322)
130 3b9p_A CG5977-PA, isoform A; A 97.8 0.00011 3.8E-09 66.5 10.5 76 125-236 53-128 (297)
131 1w4r_A Thymidine kinase; type 97.8 3.7E-05 1.3E-09 65.3 6.6 134 125-309 19-152 (195)
132 2qz4_A Paraplegin; AAA+, SPG7, 97.8 8.2E-05 2.8E-09 65.9 9.3 40 122-170 35-74 (262)
133 2qby_A CDC6 homolog 1, cell di 97.8 2.9E-05 1E-09 72.6 6.6 129 124-276 43-173 (386)
134 3cf0_A Transitional endoplasmi 97.8 6.4E-05 2.2E-09 68.6 8.6 119 121-277 44-165 (301)
135 3t15_A Ribulose bisphosphate c 97.7 2.7E-05 9.2E-10 70.9 5.5 82 122-235 32-113 (293)
136 2pt7_A CAG-ALFA; ATPase, prote 97.7 0.00011 3.7E-09 68.1 9.4 149 123-320 168-326 (330)
137 1g5t_A COB(I)alamin adenosyltr 97.7 0.00016 5.5E-09 61.4 9.6 130 126-275 28-162 (196)
138 2px0_A Flagellar biosynthesis 97.7 0.00055 1.9E-08 62.3 13.9 42 124-170 103-144 (296)
139 4aby_A DNA repair protein RECN 97.7 0.00034 1.2E-08 66.5 13.1 62 223-317 317-378 (415)
140 3g5u_A MCG1178, multidrug resi 97.7 2.1E-05 7.3E-10 85.4 5.1 26 122-147 1055-1080(1284)
141 1zu4_A FTSY; GTPase, signal re 97.7 0.00014 4.8E-09 67.0 9.8 42 123-170 102-143 (320)
142 1lv7_A FTSH; alpha/beta domain 97.7 9E-05 3.1E-09 65.7 8.3 32 129-169 48-79 (257)
143 2v1u_A Cell division control p 97.7 0.00015 5.1E-09 67.8 10.2 100 124-234 42-143 (387)
144 3vfd_A Spastin; ATPase, microt 97.7 0.0004 1.4E-08 65.6 13.0 114 124-275 146-261 (389)
145 3thx_A DNA mismatch repair pro 97.7 6E-05 2.1E-09 78.8 7.6 28 123-150 659-686 (934)
146 2qp9_X Vacuolar protein sortin 97.7 9.2E-05 3.1E-09 69.2 8.3 30 121-150 79-108 (355)
147 1ls1_A Signal recognition part 97.7 0.00013 4.6E-09 66.3 8.7 40 125-170 97-136 (295)
148 2j37_W Signal recognition part 97.6 0.0016 5.6E-08 63.5 16.8 51 114-170 82-139 (504)
149 2r8r_A Sensor protein; KDPD, P 97.6 0.00064 2.2E-08 59.1 12.5 41 125-171 4-45 (228)
150 3ice_A Transcription terminati 97.6 0.00016 5.6E-09 67.7 9.1 114 106-235 156-275 (422)
151 3hu3_A Transitional endoplasmi 97.6 0.00012 4E-09 71.5 8.5 117 122-276 234-350 (489)
152 3e2i_A Thymidine kinase; Zn-bi 97.6 9.5E-05 3.3E-09 63.7 6.7 154 109-310 11-164 (219)
153 1zp6_A Hypothetical protein AT 97.6 4E-05 1.4E-09 64.6 4.3 39 122-169 5-43 (191)
154 2orv_A Thymidine kinase; TP4A 97.6 0.00039 1.3E-08 60.5 10.4 134 125-309 18-151 (234)
155 2iw3_A Elongation factor 3A; a 97.6 0.00017 5.9E-09 75.4 9.6 26 123-148 696-721 (986)
156 1ypw_A Transitional endoplasmi 97.6 0.00012 4.1E-09 75.8 8.3 117 122-276 234-350 (806)
157 1lw7_A Transcriptional regulat 97.6 5.1E-05 1.7E-09 71.2 4.9 152 119-276 161-329 (365)
158 2ewv_A Twitching motility prot 97.6 7E-05 2.4E-09 70.5 5.7 41 123-168 133-173 (372)
159 3d8b_A Fidgetin-like protein 1 97.6 0.00031 1.1E-08 65.6 10.2 113 124-274 115-229 (357)
160 1sky_E F1-ATPase, F1-ATP synth 97.6 0.00032 1.1E-08 67.5 10.3 121 104-235 131-259 (473)
161 3pih_A Uvrabc system protein A 97.5 0.00033 1.1E-08 73.0 10.7 44 221-277 826-869 (916)
162 2x8a_A Nuclear valosin-contain 97.5 0.0003 1E-08 63.3 9.2 38 122-170 42-79 (274)
163 2ffh_A Protein (FFH); SRP54, s 97.5 0.00033 1.1E-08 66.9 9.8 89 125-232 97-191 (425)
164 1l8q_A Chromosomal replication 97.5 0.00049 1.7E-08 63.2 10.7 40 124-169 35-74 (324)
165 1fx0_B ATP synthase beta chain 97.5 0.00056 1.9E-08 66.0 11.2 122 105-235 146-280 (498)
166 2r6f_A Excinuclease ABC subuni 97.5 0.00029 1E-08 73.3 9.8 26 122-147 646-671 (972)
167 1e69_A Chromosome segregation 97.5 0.00041 1.4E-08 63.9 9.9 25 123-148 22-46 (322)
168 2o8b_B DNA mismatch repair pro 97.5 0.00067 2.3E-08 71.7 12.6 47 220-277 867-913 (1022)
169 2ck3_D ATP synthase subunit be 97.5 0.001 3.5E-08 63.9 12.7 123 104-235 133-267 (482)
170 2zan_A Vacuolar protein sortin 97.5 0.00013 4.5E-09 70.3 6.6 41 121-169 162-202 (444)
171 1jbk_A CLPB protein; beta barr 97.5 0.00033 1.1E-08 58.2 8.3 26 125-150 42-67 (195)
172 1wb9_A DNA mismatch repair pro 97.5 0.00032 1.1E-08 72.4 9.6 27 124-150 605-631 (800)
173 2p65_A Hypothetical protein PF 97.5 0.00024 8.3E-09 58.9 7.4 26 126-151 43-68 (187)
174 2vf7_A UVRA2, excinuclease ABC 97.5 0.00023 7.8E-09 73.6 8.4 24 122-145 519-542 (842)
175 2ygr_A Uvrabc system protein A 97.4 0.00041 1.4E-08 72.4 10.0 26 122-147 664-689 (993)
176 1sxj_E Activator 1 40 kDa subu 97.4 0.00043 1.5E-08 64.1 9.2 24 129-152 39-62 (354)
177 3oaa_A ATP synthase subunit al 97.4 0.00067 2.3E-08 65.4 10.6 119 105-235 143-268 (513)
178 2qby_B CDC6 homolog 3, cell di 97.4 0.00048 1.6E-08 64.4 9.1 98 126-235 45-147 (384)
179 2xxa_A Signal recognition part 97.4 0.00062 2.1E-08 65.3 9.9 39 126-170 100-139 (433)
180 2r9v_A ATP synthase subunit al 97.4 0.00078 2.7E-08 65.2 10.1 119 105-235 156-281 (515)
181 2dpy_A FLII, flagellum-specifi 97.4 0.00027 9.4E-09 67.9 7.0 55 106-169 139-193 (438)
182 1znw_A Guanylate kinase, GMP k 97.3 0.00011 3.8E-09 63.1 3.6 28 122-149 16-43 (207)
183 1htw_A HI0065; nucleotide-bind 97.3 0.00015 5.2E-09 59.7 4.2 29 122-150 29-57 (158)
184 1ixz_A ATP-dependent metallopr 97.3 0.00036 1.2E-08 61.6 6.8 26 122-149 47-72 (254)
185 2chg_A Replication factor C sm 97.3 0.0021 7.3E-08 54.5 11.5 22 129-150 41-62 (226)
186 1sxj_A Activator 1 95 kDa subu 97.3 0.0013 4.5E-08 64.5 11.3 41 124-173 75-115 (516)
187 1kgd_A CASK, peripheral plasma 97.3 0.00015 5E-09 60.8 3.7 28 122-149 1-28 (180)
188 2qe7_A ATP synthase subunit al 97.3 0.0013 4.3E-08 63.6 10.5 119 105-235 143-268 (502)
189 2dhr_A FTSH; AAA+ protein, hex 97.3 0.00048 1.6E-08 67.2 7.7 38 121-169 61-98 (499)
190 3vr4_A V-type sodium ATPase ca 97.3 0.0024 8.2E-08 62.5 12.5 119 104-234 212-342 (600)
191 3mfy_A V-type ATP synthase alp 97.2 0.0019 6.5E-08 63.0 11.4 119 105-235 208-338 (588)
192 2ius_A DNA translocase FTSK; n 97.2 0.0017 5.7E-08 63.4 11.0 46 123-170 164-209 (512)
193 2v3c_C SRP54, signal recogniti 97.2 0.0019 6.4E-08 61.9 11.2 38 127-170 100-137 (432)
194 2z4s_A Chromosomal replication 97.2 0.0006 2E-08 65.6 7.8 40 126-169 130-169 (440)
195 3tr0_A Guanylate kinase, GMP k 97.2 0.00018 6.1E-09 61.2 3.6 26 124-149 5-30 (205)
196 3uk6_A RUVB-like 2; hexameric 97.2 0.0026 8.9E-08 59.1 11.7 34 118-151 62-95 (368)
197 3uie_A Adenylyl-sulfate kinase 97.2 0.0003 1E-08 59.9 4.8 40 124-169 23-62 (200)
198 3vr4_D V-type sodium ATPase su 97.2 0.0011 3.6E-08 63.5 8.9 123 104-234 131-261 (465)
199 1z6g_A Guanylate kinase; struc 97.2 0.00018 6.2E-09 62.4 3.4 28 122-149 19-46 (218)
200 1ewq_A DNA mismatch repair pro 97.2 0.00036 1.2E-08 71.5 5.8 26 126-151 576-601 (765)
201 3c8u_A Fructokinase; YP_612366 97.1 0.00027 9.2E-09 60.6 3.8 28 123-150 19-46 (208)
202 2j41_A Guanylate kinase; GMP, 97.1 0.00027 9.1E-09 60.2 3.7 27 123-149 3-29 (207)
203 3syl_A Protein CBBX; photosynt 97.1 0.0016 5.5E-08 59.0 9.2 42 125-168 66-107 (309)
204 2pez_A Bifunctional 3'-phospho 97.1 0.0004 1.4E-08 57.9 4.7 39 124-168 3-41 (179)
205 1fx0_A ATP synthase alpha chai 97.1 0.0024 8.1E-08 61.8 10.6 118 105-234 144-268 (507)
206 1njg_A DNA polymerase III subu 97.1 0.0041 1.4E-07 53.3 11.4 25 127-151 46-70 (250)
207 1s96_A Guanylate kinase, GMP k 97.1 0.00027 9.4E-09 61.4 3.7 29 121-149 11-39 (219)
208 1w5s_A Origin recognition comp 97.1 0.0025 8.7E-08 60.0 10.6 99 125-234 49-151 (412)
209 1rz3_A Hypothetical protein rb 97.1 0.00053 1.8E-08 58.4 5.3 41 123-169 19-59 (201)
210 2qen_A Walker-type ATPase; unk 97.1 0.003 1E-07 57.9 10.8 33 126-169 31-63 (350)
211 2c61_A A-type ATP synthase non 97.1 0.0015 5.3E-08 62.6 8.8 123 105-235 133-263 (469)
212 2v9p_A Replication protein E1; 97.1 0.00033 1.1E-08 63.9 3.9 36 114-150 115-150 (305)
213 3b85_A Phosphate starvation-in 97.1 0.00017 5.7E-09 62.2 1.8 27 123-149 19-45 (208)
214 2yvu_A Probable adenylyl-sulfa 97.0 0.0006 2E-08 57.2 4.8 39 124-168 11-49 (186)
215 1sq5_A Pantothenate kinase; P- 97.0 0.00058 2E-08 62.4 5.0 43 123-170 77-120 (308)
216 3gqb_A V-type ATP synthase alp 97.0 0.0025 8.4E-08 62.2 9.6 119 104-234 201-331 (578)
217 3cf2_A TER ATPase, transitiona 97.0 0.00023 8E-09 73.1 2.6 116 120-272 505-622 (806)
218 3gqb_B V-type ATP synthase bet 97.0 0.0015 5.1E-08 62.4 7.8 126 104-235 127-265 (464)
219 3n70_A Transport activator; si 97.0 0.0011 3.8E-08 53.3 6.0 24 126-149 24-47 (145)
220 1d2n_A N-ethylmaleimide-sensit 97.0 0.004 1.4E-07 55.4 10.2 27 123-149 61-87 (272)
221 1lvg_A Guanylate kinase, GMP k 97.0 0.00038 1.3E-08 59.3 3.1 26 124-149 2-27 (198)
222 3tau_A Guanylate kinase, GMP k 96.9 0.00048 1.7E-08 59.1 3.6 26 124-149 6-31 (208)
223 4eun_A Thermoresistant glucoki 96.9 0.00048 1.6E-08 58.6 3.5 37 124-171 27-63 (200)
224 3lnc_A Guanylate kinase, GMP k 96.9 0.00028 9.5E-09 61.5 2.1 25 123-147 24-48 (231)
225 3u61_B DNA polymerase accessor 96.9 0.0082 2.8E-07 54.7 12.2 35 127-170 49-83 (324)
226 3tqc_A Pantothenate kinase; bi 96.9 0.0028 9.4E-08 58.2 8.8 40 128-171 94-133 (321)
227 2jeo_A Uridine-cytidine kinase 96.9 0.00051 1.7E-08 60.5 3.5 28 122-149 21-48 (245)
228 3l0o_A Transcription terminati 96.9 0.0014 4.7E-08 61.4 6.4 58 106-169 157-214 (427)
229 1tue_A Replication protein E1; 96.9 0.00053 1.8E-08 58.7 3.3 37 112-149 45-81 (212)
230 2ck3_A ATP synthase subunit al 96.9 0.0045 1.5E-07 59.9 10.1 125 105-235 143-276 (510)
231 3asz_A Uridine kinase; cytidin 96.9 0.00056 1.9E-08 58.5 3.4 26 124-149 4-29 (211)
232 2rhm_A Putative kinase; P-loop 96.8 0.00065 2.2E-08 57.0 3.6 28 122-149 1-28 (193)
233 3iqw_A Tail-anchored protein t 96.8 0.0088 3E-07 55.2 11.3 49 114-170 6-54 (334)
234 3aez_A Pantothenate kinase; tr 96.8 0.00069 2.4E-08 62.1 3.8 45 123-171 87-131 (312)
235 1gvn_B Zeta; postsegregational 96.8 0.0014 4.9E-08 59.2 5.8 26 124-149 31-56 (287)
236 1ypw_A Transitional endoplasmi 96.8 0.00012 4.2E-09 75.7 -1.5 120 120-275 505-625 (806)
237 2a5y_B CED-4; apoptosis; HET: 96.8 0.0058 2E-07 60.3 10.6 98 125-232 151-254 (549)
238 3zq6_A Putative arsenical pump 96.8 0.0057 1.9E-07 56.2 9.8 38 127-170 15-52 (324)
239 3vaa_A Shikimate kinase, SK; s 96.8 0.00075 2.6E-08 57.3 3.5 29 122-150 21-49 (199)
240 1knq_A Gluconate kinase; ALFA/ 96.8 0.00076 2.6E-08 55.8 3.4 26 124-149 6-31 (175)
241 3pfi_A Holliday junction ATP-d 96.8 0.009 3.1E-07 54.8 11.0 22 128-149 57-78 (338)
242 3llm_A ATP-dependent RNA helic 96.7 0.0056 1.9E-07 53.3 9.1 44 125-169 75-118 (235)
243 1p9r_A General secretion pathw 96.7 0.0015 5E-08 62.3 5.5 45 115-168 159-203 (418)
244 2w58_A DNAI, primosome compone 96.7 0.0016 5.3E-08 55.3 5.2 37 127-169 55-91 (202)
245 3te6_A Regulatory protein SIR3 96.7 0.0048 1.7E-07 56.5 8.8 106 115-234 36-145 (318)
246 2npi_A Protein CLP1; CLP1-PCF1 96.7 0.00059 2E-08 66.0 2.6 28 122-149 134-161 (460)
247 1jr3_A DNA polymerase III subu 96.7 0.012 4.2E-07 54.4 11.7 25 127-151 39-63 (373)
248 1sxj_B Activator 1 37 kDa subu 96.7 0.005 1.7E-07 55.8 8.8 22 129-150 45-66 (323)
249 3a00_A Guanylate kinase, GMP k 96.7 0.00079 2.7E-08 56.6 3.1 25 126-150 1-25 (186)
250 2bdt_A BH3686; alpha-beta prot 96.7 0.00074 2.5E-08 56.7 2.8 23 126-148 2-24 (189)
251 2qm8_A GTPase/ATPase; G protei 96.7 0.0014 4.7E-08 60.8 4.8 42 122-169 51-92 (337)
252 3cio_A ETK, tyrosine-protein k 96.7 0.011 3.6E-07 53.7 10.6 40 125-170 103-143 (299)
253 2qt1_A Nicotinamide riboside k 96.7 0.00097 3.3E-08 56.9 3.5 28 121-148 16-43 (207)
254 3gfk_B DNA-directed RNA polyme 96.7 0.002 6.8E-08 46.0 4.5 56 27-85 14-69 (79)
255 1u0j_A DNA replication protein 96.7 0.0084 2.9E-07 53.3 9.5 107 42-150 3-128 (267)
256 3pvs_A Replication-associated 96.7 0.01 3.5E-07 57.0 10.9 23 127-149 51-73 (447)
257 2iut_A DNA translocase FTSK; n 96.6 0.0092 3.2E-07 58.8 10.5 43 126-170 214-256 (574)
258 1kag_A SKI, shikimate kinase I 96.6 0.00095 3.3E-08 55.0 3.1 25 125-149 3-27 (173)
259 1z3e_B DNA-directed RNA polyme 96.6 0.0056 1.9E-07 43.1 6.2 52 35-86 12-63 (73)
260 2qor_A Guanylate kinase; phosp 96.5 0.0013 4.5E-08 56.0 3.4 28 123-150 9-36 (204)
261 1svm_A Large T antigen; AAA+ f 96.5 0.0015 5.2E-08 61.3 3.9 29 121-149 164-192 (377)
262 2gza_A Type IV secretion syste 96.5 0.0012 4.2E-08 61.7 3.3 39 123-168 172-210 (361)
263 1m7g_A Adenylylsulfate kinase; 96.5 0.0018 6E-08 55.5 4.0 41 123-168 22-62 (211)
264 3ney_A 55 kDa erythrocyte memb 96.5 0.0016 5.4E-08 55.5 3.6 26 124-149 17-42 (197)
265 3bfv_A CAPA1, CAPB2, membrane 96.5 0.022 7.4E-07 50.9 11.2 41 125-171 81-122 (271)
266 1qhx_A CPT, protein (chloramph 96.5 0.0017 5.8E-08 53.7 3.6 24 126-149 3-26 (178)
267 3ug7_A Arsenical pump-driving 96.5 0.012 4.2E-07 54.6 9.8 42 123-170 23-64 (349)
268 1hyq_A MIND, cell division inh 96.5 0.019 6.4E-07 50.6 10.6 37 128-170 5-41 (263)
269 3k4g_A DNA-directed RNA polyme 96.5 0.0066 2.3E-07 44.0 6.1 59 25-86 8-66 (86)
270 1hqc_A RUVB; extended AAA-ATPa 96.5 0.012 4.1E-07 53.4 9.6 25 126-150 38-62 (324)
271 2p67_A LAO/AO transport system 96.4 0.011 3.7E-07 54.7 9.1 42 123-170 53-94 (341)
272 3p32_A Probable GTPase RV1496/ 96.4 0.01 3.6E-07 55.1 9.1 39 126-170 79-117 (355)
273 2gno_A DNA polymerase III, gam 96.4 0.027 9.1E-07 51.2 11.5 24 126-149 18-41 (305)
274 2bbw_A Adenylate kinase 4, AK4 96.4 0.0018 6.3E-08 56.8 3.6 25 125-149 26-50 (246)
275 2i3b_A HCR-ntpase, human cance 96.4 0.0018 6.1E-08 54.8 3.2 25 126-150 1-25 (189)
276 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0022 7.4E-08 57.0 3.9 38 125-168 3-40 (260)
277 2p5t_B PEZT; postsegregational 96.4 0.0018 6.2E-08 57.2 3.4 37 124-169 30-66 (253)
278 1nks_A Adenylate kinase; therm 96.4 0.0032 1.1E-07 52.5 4.8 34 128-167 3-36 (194)
279 4e22_A Cytidylate kinase; P-lo 96.4 0.002 6.9E-08 57.0 3.6 26 124-149 25-50 (252)
280 1oft_A SULA, hypothetical prot 96.3 0.084 2.9E-06 43.0 12.8 134 106-272 23-158 (161)
281 3cm0_A Adenylate kinase; ATP-b 96.3 0.0017 5.7E-08 54.2 2.8 25 125-149 3-27 (186)
282 3kta_A Chromosome segregation 96.3 0.0023 8E-08 53.2 3.7 26 123-149 24-49 (182)
283 1kht_A Adenylate kinase; phosp 96.3 0.0022 7.6E-08 53.5 3.4 25 126-150 3-27 (192)
284 1kao_A RAP2A; GTP-binding prot 96.3 0.17 5.7E-06 40.2 14.7 23 128-150 5-27 (167)
285 4dzz_A Plasmid partitioning pr 96.3 0.014 4.8E-07 49.2 8.5 84 128-233 3-87 (206)
286 2plr_A DTMP kinase, probable t 96.3 0.0048 1.7E-07 52.3 5.5 27 125-151 3-29 (213)
287 1ly1_A Polynucleotide kinase; 96.3 0.0022 7.5E-08 53.0 3.2 22 127-148 3-24 (181)
288 2qgz_A Helicase loader, putati 96.3 0.0037 1.3E-07 57.1 4.9 37 126-168 152-189 (308)
289 1ye8_A Protein THEP1, hypothet 96.3 0.0023 7.8E-08 53.6 3.2 23 128-150 2-24 (178)
290 1y63_A LMAJ004144AAA protein; 96.2 0.0029 9.8E-08 53.0 3.8 27 123-149 7-33 (184)
291 3kb2_A SPBC2 prophage-derived 96.2 0.0024 8E-08 52.3 3.2 23 127-149 2-24 (173)
292 3pxi_A Negative regulator of g 96.2 0.0094 3.2E-07 61.2 8.1 36 128-169 523-558 (758)
293 2ph1_A Nucleotide-binding prot 96.2 0.021 7.3E-07 50.4 9.5 38 128-171 21-58 (262)
294 1iy2_A ATP-dependent metallopr 96.2 0.0042 1.4E-07 55.5 4.8 26 122-149 71-96 (278)
295 1np6_A Molybdopterin-guanine d 96.1 0.0052 1.8E-07 51.2 4.8 28 123-150 3-30 (174)
296 3lw7_A Adenylate kinase relate 96.1 0.0026 9E-08 52.0 3.0 19 128-146 3-21 (179)
297 2vp4_A Deoxynucleoside kinase; 96.1 0.002 6.9E-08 56.0 2.4 26 122-147 16-41 (230)
298 2qag_B Septin-6, protein NEDD5 96.1 0.003 1E-07 60.2 3.6 28 122-149 36-65 (427)
299 1g3q_A MIND ATPase, cell divis 96.1 0.03 1E-06 48.3 9.7 36 129-170 6-41 (237)
300 4fcw_A Chaperone protein CLPB; 96.1 0.0063 2.1E-07 55.0 5.4 40 125-170 46-85 (311)
301 3trf_A Shikimate kinase, SK; a 96.1 0.0036 1.2E-07 52.1 3.5 25 126-150 5-29 (185)
302 3iij_A Coilin-interacting nucl 96.1 0.0036 1.2E-07 51.9 3.4 26 124-149 9-34 (180)
303 3t61_A Gluconokinase; PSI-biol 96.0 0.0034 1.2E-07 53.2 3.3 24 126-149 18-41 (202)
304 1qvr_A CLPB protein; coiled co 96.0 0.013 4.5E-07 61.0 8.4 38 127-170 589-626 (854)
305 1xjc_A MOBB protein homolog; s 96.0 0.0067 2.3E-07 50.2 4.9 37 127-169 5-41 (169)
306 2a9k_A RAS-related protein RAL 96.0 0.16 5.6E-06 41.3 13.6 23 128-150 20-42 (187)
307 2c95_A Adenylate kinase 1; tra 96.0 0.0039 1.3E-07 52.2 3.5 25 125-149 8-32 (196)
308 3q9l_A Septum site-determining 96.0 0.053 1.8E-06 47.4 10.9 37 128-170 4-41 (260)
309 1tev_A UMP-CMP kinase; ploop, 96.0 0.0038 1.3E-07 52.2 3.3 24 126-149 3-26 (196)
310 1coo_A RNA polymerase alpha su 96.0 0.0042 1.4E-07 46.2 3.0 53 34-86 26-78 (98)
311 3cr8_A Sulfate adenylyltranfer 96.0 0.0038 1.3E-07 61.6 3.7 42 122-169 365-407 (552)
312 2rcn_A Probable GTPase ENGC; Y 96.0 0.005 1.7E-07 57.3 4.2 34 110-148 204-237 (358)
313 1wcv_1 SOJ, segregation protei 96.0 0.033 1.1E-06 49.0 9.5 39 126-170 6-45 (257)
314 2wwf_A Thymidilate kinase, put 96.0 0.005 1.7E-07 52.3 3.9 28 123-150 7-34 (212)
315 2ze6_A Isopentenyl transferase 95.9 0.0044 1.5E-07 54.8 3.5 23 127-149 2-24 (253)
316 1qvr_A CLPB protein; coiled co 95.9 0.024 8.1E-07 59.0 9.5 115 126-274 191-307 (854)
317 1zd8_A GTP:AMP phosphotransfer 95.9 0.0044 1.5E-07 53.6 3.3 27 123-149 4-30 (227)
318 1nn5_A Similar to deoxythymidy 95.9 0.0048 1.7E-07 52.5 3.6 27 124-150 7-33 (215)
319 1cke_A CK, MSSA, protein (cyti 95.9 0.0049 1.7E-07 53.0 3.6 24 126-149 5-28 (227)
320 2vli_A Antibiotic resistance p 95.9 0.0037 1.3E-07 51.8 2.7 25 125-149 4-28 (183)
321 2oap_1 GSPE-2, type II secreti 95.9 0.0055 1.9E-07 59.9 4.3 39 123-168 257-295 (511)
322 3igf_A ALL4481 protein; two-do 95.9 0.017 5.7E-07 54.2 7.4 36 127-168 3-38 (374)
323 2v54_A DTMP kinase, thymidylat 95.9 0.005 1.7E-07 52.0 3.6 25 125-149 3-27 (204)
324 3umf_A Adenylate kinase; rossm 95.9 0.0051 1.7E-07 53.2 3.5 30 121-150 24-53 (217)
325 2yv5_A YJEQ protein; hydrolase 95.8 0.0047 1.6E-07 56.2 3.5 24 124-147 163-186 (302)
326 4ag6_A VIRB4 ATPase, type IV s 95.8 0.01 3.4E-07 55.9 5.8 40 124-169 33-72 (392)
327 1odf_A YGR205W, hypothetical 3 95.8 0.0055 1.9E-07 55.4 3.8 28 123-150 28-55 (290)
328 1in4_A RUVB, holliday junction 95.8 0.015 5E-07 53.6 6.8 24 127-150 52-75 (334)
329 2cdn_A Adenylate kinase; phosp 95.8 0.0057 2E-07 51.7 3.7 25 125-149 19-43 (201)
330 2bwj_A Adenylate kinase 5; pho 95.8 0.0033 1.1E-07 52.8 2.1 25 125-149 11-35 (199)
331 1aky_A Adenylate kinase; ATP:A 95.8 0.0056 1.9E-07 52.6 3.6 25 125-149 3-27 (220)
332 2ce2_X GTPase HRAS; signaling 95.8 0.24 8.2E-06 39.2 13.3 22 129-150 6-27 (166)
333 1jjv_A Dephospho-COA kinase; P 95.8 0.0051 1.7E-07 52.2 3.2 21 128-148 4-24 (206)
334 2bov_A RAla, RAS-related prote 95.8 0.24 8E-06 41.2 13.8 23 128-150 16-38 (206)
335 3euj_A Chromosome partition pr 95.8 0.0048 1.6E-07 59.7 3.3 27 122-149 26-52 (483)
336 1u8z_A RAS-related protein RAL 95.8 0.24 8.3E-06 39.3 13.3 23 128-150 6-28 (168)
337 3la6_A Tyrosine-protein kinase 95.7 0.08 2.7E-06 47.6 11.0 40 126-171 92-132 (286)
338 3nwj_A ATSK2; P loop, shikimat 95.7 0.0041 1.4E-07 55.0 2.3 28 122-149 41-71 (250)
339 4eaq_A DTMP kinase, thymidylat 95.7 0.0066 2.2E-07 52.9 3.6 29 122-150 22-50 (229)
340 2pbr_A DTMP kinase, thymidylat 95.7 0.0095 3.3E-07 49.6 4.5 23 128-150 2-24 (195)
341 2xau_A PRE-mRNA-splicing facto 95.7 0.072 2.5E-06 54.7 11.8 42 124-168 107-148 (773)
342 2bjv_A PSP operon transcriptio 95.7 0.01 3.5E-07 52.4 4.9 38 127-170 30-67 (265)
343 2va8_A SSO2462, SKI2-type heli 95.7 0.036 1.2E-06 56.3 9.6 42 123-169 43-84 (715)
344 2if2_A Dephospho-COA kinase; a 95.6 0.006 2.1E-07 51.6 3.1 21 128-148 3-23 (204)
345 2z0h_A DTMP kinase, thymidylat 95.6 0.011 3.6E-07 49.5 4.6 23 128-150 2-24 (197)
346 1via_A Shikimate kinase; struc 95.6 0.0057 2E-07 50.5 2.8 22 128-149 6-27 (175)
347 2iyv_A Shikimate kinase, SK; t 95.6 0.006 2.1E-07 50.7 3.0 23 127-149 3-25 (184)
348 3sop_A Neuronal-specific septi 95.6 0.0067 2.3E-07 54.3 3.4 24 128-151 4-27 (270)
349 4dsu_A GTPase KRAS, isoform 2B 95.6 0.23 7.8E-06 40.5 12.8 23 128-150 6-28 (189)
350 3a8t_A Adenylate isopentenyltr 95.6 0.013 4.5E-07 53.9 5.4 26 124-149 38-63 (339)
351 2www_A Methylmalonic aciduria 95.6 0.011 3.9E-07 54.7 5.1 40 124-169 72-111 (349)
352 2jaq_A Deoxyguanosine kinase; 95.6 0.0069 2.3E-07 51.0 3.2 22 128-149 2-23 (205)
353 1ukz_A Uridylate kinase; trans 95.5 0.0078 2.7E-07 50.8 3.5 24 126-149 15-38 (203)
354 1a5t_A Delta prime, HOLB; zinc 95.5 0.097 3.3E-06 48.0 11.2 74 127-200 25-116 (334)
355 3end_A Light-independent proto 95.5 0.01 3.5E-07 53.8 4.4 42 124-171 39-80 (307)
356 2qmh_A HPR kinase/phosphorylas 95.5 0.0075 2.6E-07 51.2 3.2 25 125-149 33-57 (205)
357 2efe_B Small GTP-binding prote 95.5 0.16 5.6E-06 41.1 11.5 22 128-149 14-35 (181)
358 3sr0_A Adenylate kinase; phosp 95.5 0.0077 2.6E-07 51.6 3.2 23 128-150 2-24 (206)
359 2r62_A Cell division protease 95.5 0.0059 2E-07 54.1 2.6 22 129-150 47-68 (268)
360 1zak_A Adenylate kinase; ATP:A 95.5 0.0074 2.5E-07 51.9 3.2 25 125-149 4-28 (222)
361 1qf9_A UMP/CMP kinase, protein 95.4 0.0077 2.6E-07 50.1 3.1 24 126-149 6-29 (194)
362 1sxj_C Activator 1 40 kDa subu 95.4 0.0064 2.2E-07 56.0 2.8 23 129-151 49-71 (340)
363 1ex7_A Guanylate kinase; subst 95.4 0.0089 3E-07 50.3 3.3 22 128-149 3-24 (186)
364 1gtv_A TMK, thymidylate kinase 95.4 0.0042 1.4E-07 52.9 1.3 23 128-150 2-24 (214)
365 3fb4_A Adenylate kinase; psych 95.4 0.0096 3.3E-07 50.8 3.5 22 128-149 2-23 (216)
366 1e6c_A Shikimate kinase; phosp 95.4 0.0078 2.7E-07 49.3 2.8 23 127-149 3-25 (173)
367 3tlx_A Adenylate kinase 2; str 95.4 0.0094 3.2E-07 52.3 3.5 25 125-149 28-52 (243)
368 1zuh_A Shikimate kinase; alpha 95.3 0.0095 3.3E-07 48.7 3.3 24 126-149 7-30 (168)
369 2r2a_A Uncharacterized protein 95.3 0.016 5.3E-07 49.4 4.7 25 126-150 5-29 (199)
370 1yrb_A ATP(GTP)binding protein 95.3 0.022 7.7E-07 49.9 5.8 40 124-170 12-51 (262)
371 1pui_A ENGB, probable GTP-bind 95.3 0.0044 1.5E-07 52.5 1.1 27 122-148 22-48 (210)
372 3be4_A Adenylate kinase; malar 95.3 0.0099 3.4E-07 51.0 3.3 25 125-149 4-28 (217)
373 3dl0_A Adenylate kinase; phosp 95.3 0.0097 3.3E-07 50.8 3.2 22 128-149 2-23 (216)
374 1a7j_A Phosphoribulokinase; tr 95.3 0.0073 2.5E-07 54.6 2.5 40 126-171 5-44 (290)
375 1tq4_A IIGP1, interferon-induc 95.2 0.0064 2.2E-07 57.8 2.1 24 125-148 68-91 (413)
376 1r6b_X CLPA protein; AAA+, N-t 95.2 0.037 1.3E-06 56.7 7.9 26 125-150 206-231 (758)
377 1r6b_X CLPA protein; AAA+, N-t 95.2 0.038 1.3E-06 56.6 8.0 35 127-170 489-523 (758)
378 2oil_A CATX-8, RAS-related pro 95.2 0.3 1E-05 40.2 12.3 23 128-150 27-49 (193)
379 1ofh_A ATP-dependent HSL prote 95.2 0.014 4.9E-07 52.4 4.2 35 126-169 50-84 (310)
380 2fn4_A P23, RAS-related protei 95.2 0.35 1.2E-05 38.9 12.5 22 128-149 11-32 (181)
381 1vt4_I APAF-1 related killer D 95.2 0.12 4E-06 54.7 11.3 49 126-177 150-198 (1221)
382 1uf9_A TT1252 protein; P-loop, 95.2 0.011 3.9E-07 49.6 3.3 23 126-148 8-30 (203)
383 3con_A GTPase NRAS; structural 95.2 0.14 4.9E-06 42.0 10.2 23 128-150 23-45 (190)
384 1q3t_A Cytidylate kinase; nucl 95.2 0.013 4.3E-07 51.0 3.7 27 123-149 13-39 (236)
385 3clv_A RAB5 protein, putative; 95.2 0.17 5.8E-06 41.7 10.7 22 128-149 9-30 (208)
386 1c1y_A RAS-related protein RAP 95.2 0.16 5.3E-06 40.5 10.1 21 129-149 6-26 (167)
387 2pt5_A Shikimate kinase, SK; a 95.1 0.012 4E-07 48.0 3.2 22 128-149 2-23 (168)
388 2woj_A ATPase GET3; tail-ancho 95.1 0.026 9E-07 52.4 5.9 51 113-171 7-59 (354)
389 3qf7_A RAD50; ABC-ATPase, ATPa 95.1 0.012 4E-07 55.0 3.5 45 220-277 302-346 (365)
390 3kkq_A RAS-related protein M-R 95.1 0.22 7.6E-06 40.5 11.2 22 128-149 20-41 (183)
391 3r20_A Cytidylate kinase; stru 95.1 0.011 3.9E-07 51.5 3.2 24 126-149 9-32 (233)
392 2fna_A Conserved hypothetical 95.1 0.022 7.5E-07 52.1 5.3 35 127-170 31-65 (357)
393 2fg5_A RAB-22B, RAS-related pr 95.1 0.25 8.6E-06 40.8 11.5 23 128-150 25-47 (192)
394 1vht_A Dephospho-COA kinase; s 95.1 0.013 4.5E-07 50.1 3.5 23 126-148 4-26 (218)
395 2y8e_A RAB-protein 6, GH09086P 95.1 0.43 1.5E-05 38.4 12.7 22 128-149 16-37 (179)
396 3m6a_A ATP-dependent protease 95.1 0.013 4.4E-07 57.8 3.8 26 125-150 107-132 (543)
397 1cp2_A CP2, nitrogenase iron p 95.0 0.019 6.6E-07 50.7 4.6 38 128-171 3-40 (269)
398 4edh_A DTMP kinase, thymidylat 95.0 0.023 7.9E-07 48.8 4.9 37 124-166 4-40 (213)
399 2c9o_A RUVB-like 1; hexameric 95.0 0.017 5.9E-07 55.5 4.5 30 121-150 58-87 (456)
400 1sxj_D Activator 1 41 kDa subu 95.0 0.019 6.6E-07 52.7 4.6 22 129-150 61-82 (353)
401 2f1r_A Molybdopterin-guanine d 95.0 0.0071 2.4E-07 50.2 1.4 39 127-169 3-41 (171)
402 1u0l_A Probable GTPase ENGC; p 95.0 0.011 3.6E-07 53.8 2.7 26 123-148 166-191 (301)
403 1uj2_A Uridine-cytidine kinase 95.0 0.013 4.5E-07 51.5 3.2 44 127-171 23-66 (252)
404 3io3_A DEHA2D07832P; chaperone 94.9 0.033 1.1E-06 51.6 6.0 49 114-170 8-58 (348)
405 1t9h_A YLOQ, probable GTPase E 94.9 0.0044 1.5E-07 56.5 0.0 26 123-148 170-195 (307)
406 1ak2_A Adenylate kinase isoenz 94.9 0.017 5.7E-07 50.1 3.7 25 125-149 15-39 (233)
407 3tkl_A RAS-related protein RAB 94.9 0.33 1.1E-05 39.9 11.7 23 128-150 18-40 (196)
408 3hws_A ATP-dependent CLP prote 94.9 0.026 8.8E-07 52.5 5.1 26 125-150 50-75 (363)
409 1f2t_A RAD50 ABC-ATPase; DNA d 94.9 0.018 6.1E-07 46.5 3.5 22 127-148 24-45 (149)
410 1ihu_A Arsenical pump-driving 94.9 0.02 7E-07 56.9 4.6 52 113-170 313-365 (589)
411 1r8s_A ADP-ribosylation factor 94.9 0.42 1.4E-05 37.9 11.9 43 129-171 3-54 (164)
412 2xb4_A Adenylate kinase; ATP-b 94.8 0.015 5.1E-07 50.2 3.2 22 128-149 2-23 (223)
413 1ojl_A Transcriptional regulat 94.8 0.021 7.1E-07 51.9 4.2 40 125-170 24-63 (304)
414 3k1j_A LON protease, ATP-depen 94.8 0.021 7.3E-07 57.0 4.7 28 123-150 57-84 (604)
415 3kjh_A CO dehydrogenase/acetyl 94.8 0.017 5.8E-07 50.2 3.6 36 129-170 3-38 (254)
416 2zj8_A DNA helicase, putative 94.8 0.025 8.4E-07 57.7 5.3 42 124-170 37-78 (720)
417 3ake_A Cytidylate kinase; CMP 94.8 0.017 5.7E-07 48.8 3.2 22 128-149 4-25 (208)
418 1um8_A ATP-dependent CLP prote 94.8 0.029 9.8E-07 52.4 5.1 27 124-150 70-96 (376)
419 1w1w_A Structural maintenance 94.7 0.019 6.6E-07 54.7 4.0 27 123-149 23-49 (430)
420 3d3q_A TRNA delta(2)-isopenten 94.7 0.018 6.2E-07 53.1 3.6 23 127-149 8-30 (340)
421 2grj_A Dephospho-COA kinase; T 94.7 0.017 5.9E-07 48.8 3.2 24 126-149 12-35 (192)
422 3c5c_A RAS-like protein 12; GD 94.7 0.41 1.4E-05 39.3 11.7 23 128-150 23-45 (187)
423 2o5v_A DNA replication and rep 94.7 0.018 6.1E-07 53.7 3.4 25 123-148 24-48 (359)
424 1e4v_A Adenylate kinase; trans 94.6 0.017 6E-07 49.2 3.1 22 128-149 2-23 (214)
425 3dz8_A RAS-related protein RAB 94.6 0.22 7.5E-06 41.1 9.9 23 128-150 25-47 (191)
426 2afh_E Nitrogenase iron protei 94.6 0.024 8.3E-07 50.8 4.1 39 127-171 3-41 (289)
427 2atv_A RERG, RAS-like estrogen 94.6 0.87 3E-05 37.5 13.7 22 128-149 30-51 (196)
428 4b3f_X DNA-binding protein smu 94.6 0.023 8E-07 57.2 4.4 40 125-170 204-243 (646)
429 2v6i_A RNA helicase; membrane, 94.6 0.097 3.3E-06 49.8 8.5 50 125-184 1-51 (431)
430 1ltq_A Polynucleotide kinase; 94.6 0.018 6.2E-07 51.8 3.2 22 127-148 3-24 (301)
431 3crm_A TRNA delta(2)-isopenten 94.6 0.031 1.1E-06 51.2 4.7 23 127-149 6-28 (323)
432 3fwy_A Light-independent proto 94.5 0.029 9.8E-07 51.3 4.4 42 123-170 45-86 (314)
433 4f92_B U5 small nuclear ribonu 94.5 0.057 1.9E-06 60.2 7.5 47 37-85 732-778 (1724)
434 3zvl_A Bifunctional polynucleo 94.5 0.019 6.4E-07 54.7 3.2 24 125-148 257-280 (416)
435 2p6r_A Afuhel308 helicase; pro 94.5 0.027 9.1E-07 57.2 4.4 38 126-169 40-77 (702)
436 2f6r_A COA synthase, bifunctio 94.5 0.021 7.3E-07 51.2 3.3 22 126-147 75-96 (281)
437 2gj8_A MNME, tRNA modification 94.5 0.022 7.5E-07 46.7 3.1 24 125-148 3-26 (172)
438 3exa_A TRNA delta(2)-isopenten 94.4 0.022 7.5E-07 51.9 3.3 24 126-149 3-26 (322)
439 3tqf_A HPR(Ser) kinase; transf 94.4 0.022 7.6E-07 47.2 3.1 24 126-149 16-39 (181)
440 3ea0_A ATPase, para family; al 94.4 0.048 1.6E-06 47.2 5.5 40 126-171 4-45 (245)
441 1oix_A RAS-related protein RAB 94.4 0.021 7.2E-07 47.7 3.1 23 128-150 31-53 (191)
442 1nij_A Hypothetical protein YJ 94.4 0.018 6.3E-07 52.6 2.9 23 127-149 5-27 (318)
443 2wsm_A Hydrogenase expression/ 94.4 0.046 1.6E-06 46.5 5.2 36 128-170 32-67 (221)
444 1ihu_A Arsenical pump-driving 94.4 0.039 1.3E-06 54.9 5.3 40 125-170 7-46 (589)
445 1qhl_A Protein (cell division 94.3 0.0044 1.5E-07 54.0 -1.4 24 127-150 28-51 (227)
446 2f9l_A RAB11B, member RAS onco 94.3 0.022 7.6E-07 47.7 3.0 22 128-149 7-28 (199)
447 3lv8_A DTMP kinase, thymidylat 94.3 0.038 1.3E-06 48.2 4.5 32 121-152 22-53 (236)
448 3foz_A TRNA delta(2)-isopenten 94.3 0.026 8.9E-07 51.3 3.5 24 126-149 10-33 (316)
449 2r44_A Uncharacterized protein 94.3 0.043 1.5E-06 50.1 5.0 24 126-149 46-69 (331)
450 3v9p_A DTMP kinase, thymidylat 94.3 0.029 9.8E-07 48.7 3.6 30 121-150 20-49 (227)
451 4dkx_A RAS-related protein RAB 94.2 0.62 2.1E-05 39.7 12.0 22 129-150 16-37 (216)
452 2ga8_A Hypothetical 39.9 kDa p 94.1 0.032 1.1E-06 51.7 3.7 27 124-150 20-48 (359)
453 4gzl_A RAS-related C3 botulinu 94.1 0.22 7.7E-06 41.7 8.9 24 128-151 32-55 (204)
454 3co5_A Putative two-component 94.1 0.012 4.2E-07 46.9 0.8 21 127-147 28-48 (143)
455 2woo_A ATPase GET3; tail-ancho 94.0 0.064 2.2E-06 49.2 5.6 40 126-171 19-58 (329)
456 3sfz_A APAF-1, apoptotic pepti 94.0 0.14 4.8E-06 54.9 9.1 56 114-171 135-190 (1249)
457 2wji_A Ferrous iron transport 94.0 0.03 1E-06 45.4 3.0 21 128-148 5-25 (165)
458 2chq_A Replication factor C sm 94.0 0.041 1.4E-06 49.5 4.2 22 129-150 41-62 (319)
459 1iqp_A RFCS; clamp loader, ext 93.9 0.029 9.8E-07 50.8 3.1 22 129-150 49-70 (327)
460 3cwq_A Para family chromosome 93.9 0.053 1.8E-06 46.2 4.6 37 128-171 3-39 (209)
461 1e9r_A Conjugal transfer prote 93.9 0.04 1.4E-06 52.5 4.2 36 127-168 54-89 (437)
462 4tmk_A Protein (thymidylate ki 93.9 0.051 1.8E-06 46.6 4.5 28 125-152 2-29 (213)
463 3i8s_A Ferrous iron transport 93.9 0.35 1.2E-05 42.9 10.2 44 128-171 5-60 (274)
464 3qks_A DNA double-strand break 93.9 0.037 1.3E-06 47.0 3.5 23 127-149 24-46 (203)
465 2oze_A ORF delta'; para, walke 93.9 0.041 1.4E-06 49.4 4.0 40 126-171 34-76 (298)
466 3fkq_A NTRC-like two-domain pr 93.8 0.047 1.6E-06 51.0 4.4 40 124-169 141-181 (373)
467 1zd9_A ADP-ribosylation factor 93.8 0.49 1.7E-05 38.8 10.3 22 128-149 24-45 (188)
468 2zej_A Dardarin, leucine-rich 93.8 0.028 9.4E-07 46.5 2.5 21 128-148 4-24 (184)
469 3e1s_A Exodeoxyribonuclease V, 93.8 0.054 1.9E-06 53.7 4.9 38 126-169 204-241 (574)
470 2ocp_A DGK, deoxyguanosine kin 93.7 0.036 1.2E-06 48.2 3.2 24 126-149 2-25 (241)
471 2h57_A ADP-ribosylation factor 93.6 0.24 8.3E-06 40.7 8.1 23 128-150 23-45 (190)
472 3q3j_B RHO-related GTP-binding 93.6 0.32 1.1E-05 41.1 9.0 23 128-150 29-51 (214)
473 3t1o_A Gliding protein MGLA; G 93.5 0.47 1.6E-05 38.8 9.8 19 128-146 16-34 (198)
474 1z6t_A APAF-1, apoptotic prote 93.5 0.055 1.9E-06 53.6 4.4 54 114-170 135-189 (591)
475 1z2a_A RAS-related protein RAB 93.5 0.042 1.4E-06 44.1 3.0 23 128-150 7-29 (168)
476 1g8p_A Magnesium-chelatase 38 93.5 0.029 1E-06 51.4 2.3 22 129-150 48-69 (350)
477 2gks_A Bifunctional SAT/APS ki 93.4 0.07 2.4E-06 52.5 5.0 50 114-169 356-409 (546)
478 2dyk_A GTP-binding protein; GT 93.3 0.045 1.5E-06 43.6 3.0 22 128-149 3-24 (161)
479 3eph_A TRNA isopentenyltransfe 93.3 0.048 1.7E-06 51.4 3.5 23 127-149 3-25 (409)
480 2wjg_A FEOB, ferrous iron tran 93.3 0.045 1.6E-06 45.0 3.0 22 128-149 9-30 (188)
481 3tmk_A Thymidylate kinase; pho 93.3 0.06 2E-06 46.3 3.8 27 124-150 3-29 (216)
482 1g41_A Heat shock protein HSLU 93.3 0.063 2.2E-06 51.3 4.3 23 128-150 52-74 (444)
483 1ni3_A YCHF GTPase, YCHF GTP-b 93.2 0.058 2E-06 50.8 3.9 29 120-148 14-42 (392)
484 3upu_A ATP-dependent DNA helic 93.1 0.066 2.3E-06 51.4 4.2 36 128-169 47-83 (459)
485 2hf9_A Probable hydrogenase ni 93.1 0.057 2E-06 46.1 3.4 24 128-151 40-63 (226)
486 3ld9_A DTMP kinase, thymidylat 93.1 0.06 2.1E-06 46.5 3.5 27 124-150 19-45 (223)
487 1p5z_B DCK, deoxycytidine kina 93.1 0.028 9.6E-07 49.7 1.4 25 124-148 22-46 (263)
488 2h92_A Cytidylate kinase; ross 93.0 0.052 1.8E-06 46.2 3.1 24 126-149 3-26 (219)
489 3q85_A GTP-binding protein REM 93.0 0.054 1.9E-06 43.5 3.0 19 129-147 5-23 (169)
490 2nzj_A GTP-binding protein REM 93.0 0.054 1.8E-06 43.8 3.0 21 128-148 6-26 (175)
491 2dy1_A Elongation factor G; tr 92.9 0.14 4.6E-06 51.8 6.4 28 123-150 6-33 (665)
492 1ek0_A Protein (GTP-binding pr 92.9 0.057 2E-06 43.3 3.0 22 129-150 6-27 (170)
493 2erx_A GTP-binding protein DI- 92.9 0.057 1.9E-06 43.4 3.0 22 128-149 5-26 (172)
494 1x6v_B Bifunctional 3'-phospho 92.9 0.078 2.7E-06 52.9 4.5 26 125-150 51-76 (630)
495 2ged_A SR-beta, signal recogni 92.9 0.056 1.9E-06 44.7 3.0 24 126-149 48-71 (193)
496 1g16_A RAS-related protein SEC 92.9 0.055 1.9E-06 43.4 2.9 21 129-149 6-26 (170)
497 1ky3_A GTP-binding protein YPT 92.8 0.058 2E-06 43.9 3.0 22 128-149 10-31 (182)
498 3qkt_A DNA double-strand break 92.8 0.069 2.4E-06 49.1 3.8 62 220-313 271-332 (339)
499 1z08_A RAS-related protein RAB 92.8 0.059 2E-06 43.3 2.9 23 128-150 8-30 (170)
500 3nbx_X ATPase RAVA; AAA+ ATPas 92.8 0.028 9.7E-07 54.7 1.2 25 126-150 41-65 (500)
No 1
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=100.00 E-value=6.7e-57 Score=430.59 Aligned_cols=325 Identities=50% Similarity=0.849 Sum_probs=278.0
Q ss_pred cccccchhhhcHHHHHhCCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHHHHhhcCCCchhhhH
Q 047388 20 DIDDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSDAL 99 (352)
Q Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|++...+.++++|+.+||++.++++|+++||+|+++++..++.+|++++|+++.++.++++.+++.++.+|.+|.+++
T Consensus 72 ~~~~~~~~~~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~~~~~~~~~ta~~l~ 151 (400)
T 3lda_A 72 YDEAALGSFVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVPMGFVTAADFH 151 (400)
T ss_dssp ------CCSCBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHHHSCCSCCCHHHHH
T ss_pred cccccccCccCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHhccccCCCHHHHH
Confidence 34555566789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHH
Q 047388 100 LRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVP 179 (352)
Q Consensus 100 ~~~~~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~ 179 (352)
+.+....+++||++.||++|+|||++|++++|+|+||+||||||++++.+++.|+..|+.+++++||++|+.+.+.++++
T Consensus 152 ~~~~~~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~ 231 (400)
T 3lda_A 152 MRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVS 231 (400)
T ss_dssp HHHHTSCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHH
T ss_pred hhhccCCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999988888899999999999999999999
Q ss_pred HHHHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHH
Q 047388 180 IAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLT 259 (352)
Q Consensus 180 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~ 259 (352)
++++++++++.+++|+.+.+..+..++.+.+..+...+...++++||||+++.+++.++++++++.+|++.+.++++.|+
T Consensus 232 ~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~ 311 (400)
T 3lda_A 232 IAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQ 311 (400)
T ss_dssp HHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHH
Confidence 99999999988889999999988888887777777777778999999999999999888877788999988899999999
Q ss_pred HHHHHhCcEEEEEcccccCCCCC-cccCCCCCCCcchhhhhccceEEEEEeecCCeEEEEEEeCCCCCcccccccceeee
Q 047388 260 KISEEFNVAVYMTNQVIADPGGG-VFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHII 338 (352)
Q Consensus 260 ~la~~~~~~viv~~h~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~Ks~~~~~~~~~~~~~~~~ 338 (352)
++++++|++||++||+...+++. +|.+++.+|+||..|+|++|++|+|++.+++.|+++++|+|+.|++++.
T Consensus 312 ~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~g~~R~l~v~K~R~~p~~e~~------- 384 (400)
T 3lda_A 312 RLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGKGCQRLCKVVDSPCLPEAECV------- 384 (400)
T ss_dssp HHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECSTTEEEEEEEECSSSCSCEEE-------
T ss_pred HHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecCCCcEEEEEEcCCCCCCCceE-------
Confidence 99999999999999997766654 5667778899999999999999999998888899999999999999876
Q ss_pred eEEEeCCCccCCCC
Q 047388 339 LIKITPGGIADAKD 352 (352)
Q Consensus 339 ~f~I~~~Gi~~~~~ 352 (352)
|.|+++||++++|
T Consensus 385 -F~It~~Gi~~~~~ 397 (400)
T 3lda_A 385 -FAIYEDGVGDPRE 397 (400)
T ss_dssp -EEEETTEEECCC-
T ss_pred -EEEeCCccccccc
Confidence 9999999999875
No 2
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=100.00 E-value=1.1e-55 Score=416.60 Aligned_cols=334 Identities=60% Similarity=0.913 Sum_probs=219.1
Q ss_pred hhhhhhhcccccccchhhhcHHHHHhCCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHHHHhhc
Q 047388 11 SQLQLVEREDIDDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNF 90 (352)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 90 (352)
-+...++++..|++...+.+|..|+.+||++.++++|+++||+|+++++..++.+|++++|+++.++.++++.+.+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~is~~~~~~~~~~a~~~~~~ 86 (343)
T 1v5w_A 7 DQVVAEEPGFQDEEESLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIEP 86 (343)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred hhhcccchhhhcccccccCcHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHHhhccc
Confidence 34445555545555444459999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhHHhhhcccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 91 GYITGSDALLRRKAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 91 ~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
+|.++.++++.+.+..+++||++.||.+|+||+++|++++|+|+||+|||+||++++.+++.+..+||.+++|+||++|+
T Consensus 87 ~~~~~~~~~~~~~~~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 87 GFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp CSEEHHHHHHHGGGCCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCcHHHHHhhhcccceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 99999999887777899999999999999999999999999999999999999999999988888888899999999999
Q ss_pred CCChhhHHHHHHHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhc--CCceEEEEcccccchhcccCCCcchHHHH
Q 047388 171 TFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE--EPFRLLIVDSVIALFRVDFTGRGELADRQ 248 (352)
Q Consensus 171 ~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~--~~~~lvvIDsl~~l~~~~~~~~g~~~~r~ 248 (352)
.|++.++.+++++++++++.+++|+.+.+..+.+++.+++..+...+.+ .++++|||||++.+++.++.+++++.+|+
T Consensus 167 ~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~ 246 (343)
T 1v5w_A 167 TFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQ 246 (343)
T ss_dssp CCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHH
Confidence 9999999999999999998888999999988888888887777777777 78999999999999987776556778888
Q ss_pred HHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCC-cccCCCCCCCcchhhhhccceEEEEEeecCCeEEEEEEeCCCCCc
Q 047388 249 QKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGG-VFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPE 327 (352)
Q Consensus 249 ~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~Ks~~~~~ 327 (352)
..+.++++.|+++++++|++||++||+++..+.. +|.+++..|+||..|+|.+|++|+|++.++..|+++|.|+|+.|.
T Consensus 247 ~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r~~~~~r~~~v~K~r~~p~ 326 (343)
T 1v5w_A 247 QKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPE 326 (343)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECC-------------------CCTTTTSSSEEEEEEESSTTEEEEEEEECTTCCS
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEeeceecCCCccccCCCCCcCCchHHHHHhCCEEEEEEEcCCCEEEEEEEECCCCCC
Confidence 7889999999999999999999999999876543 454566789999999999999999999878889999999999998
Q ss_pred ccccccceeeeeEEEeCCCccCCCC
Q 047388 328 AEAISFSYHIILIKITPGGIADAKD 352 (352)
Q Consensus 328 ~~~~~~~~~~~~f~I~~~Gi~~~~~ 352 (352)
+++. |.|+++||++++|
T Consensus 327 ~~~~--------f~I~~~Gi~~~~~ 343 (343)
T 1v5w_A 327 NEAT--------FAITAGGIGDAKE 343 (343)
T ss_dssp SCEE--------EEEETTEEEECCC
T ss_pred eeEE--------EEEeCCCccCCCC
Confidence 8777 9999999999876
No 3
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=100.00 E-value=5.4e-53 Score=395.62 Aligned_cols=313 Identities=42% Similarity=0.668 Sum_probs=208.9
Q ss_pred hhcHHHHHhCCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHHHHhhcCCCchhhhHHhhhcccc
Q 047388 28 FEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIK 107 (352)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (352)
+.+|..|. |+++.++++|+++||+|+++++..++.+|++.+|+++.++.++++.+.+.++.+|.++.++++.+....+
T Consensus 11 ~~~~~~l~--g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (324)
T 2z43_A 11 IKTINDLP--GISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALEVKKERMNVKK 88 (324)
T ss_dssp ---------------------------------------------------------------CCCCHHHHHHHHCSCCE
T ss_pred CccHHHcC--CCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHHHHHHhhcccCccchhhhhhhhccCCc
Confidence 45788884 8999999999999999999999999999999999999999999999999999999999999877777889
Q ss_pred cccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCC
Q 047388 108 ITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMD 187 (352)
Q Consensus 108 i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~ 187 (352)
++||++.||.+|+||+++|++++|+|+||+|||+||++++.+++.+..+||.+++|+||++|++|++.++.+++++++++
T Consensus 89 i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~ 168 (324)
T 2z43_A 89 ISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLD 168 (324)
T ss_dssp ECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCC
T ss_pred ccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999988887778788999999999999999999999999999
Q ss_pred cccccccEEEEecCCHHHHHHHHHHHHHHhhc-CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhC
Q 047388 188 PGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFN 266 (352)
Q Consensus 188 ~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~-~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~ 266 (352)
++.+++|+.+.+..+.+++.+++..+...+.+ .++++|||||++.+++.++.+++++.+|+..+.++++.|+++++++|
T Consensus 169 ~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~ 248 (324)
T 2z43_A 169 IDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYD 248 (324)
T ss_dssp HHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 98888899999999888888888888888877 78999999999999987776656777887788999999999999999
Q ss_pred cEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeecCCeEEEEEEeCCCCCcccccccceeeeeEEEeCCC
Q 047388 267 VAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPGG 346 (352)
Q Consensus 267 ~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I~~~G 346 (352)
++||++||+++.+++ +| +++..|++|..|+|.+|++|.|++.++..|++++.|+|+.|.+++. |.|+++|
T Consensus 249 ~~Vi~~nq~~~~~~~-~~-~~~~~~~gg~~l~~~~d~~l~l~r~~~~~r~~~v~k~~~~p~~~~~--------f~I~~~G 318 (324)
T 2z43_A 249 IAVIITNQVMARPDM-FY-GDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVV--------FALTEEG 318 (324)
T ss_dssp CEEEEEEEC--------------------------CEEEEEEECSTTEEEEEEEECSSSCCEEEE--------EEEETTE
T ss_pred CEEEEEcceeecCCC-cC-CCCCCCCchHHHHhhCcEEEEEEEcCCCeEEEEEEECCCCCceEEE--------EEEeCCC
Confidence 999999999986543 34 5667899999999999999999998888899999999999988776 9999999
Q ss_pred ccCCCC
Q 047388 347 IADAKD 352 (352)
Q Consensus 347 i~~~~~ 352 (352)
|++++|
T Consensus 319 i~~~~~ 324 (324)
T 2z43_A 319 IRDAEE 324 (324)
T ss_dssp EECCC-
T ss_pred cccCCC
Confidence 999876
No 4
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=100.00 E-value=2.3e-51 Score=384.46 Aligned_cols=307 Identities=42% Similarity=0.696 Sum_probs=272.8
Q ss_pred HHHHHhCCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHHHHhhcCCCchhhhHHhhhccccccc
Q 047388 31 IDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSDALLRRKAVIKITT 110 (352)
Q Consensus 31 ~~~l~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~T 110 (352)
|..| +|+++.++++|+++||+|+++++..++.+|++++|++++++.+++..+++.++.+|.++.++++.+....+++|
T Consensus 5 ~~~l--~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~i~T 82 (322)
T 2i1q_A 5 LTDL--PGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLLKQRSTVWKLST 82 (322)
T ss_dssp CTTS--TTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHHTTCSCCCTHHHHHHHTTCCEECC
T ss_pred Hhhc--CCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHHhhhhcCCcHHHHHHHhccCCeecC
Confidence 4445 48999999999999999999999999999999999999999999999999999999999999877777889999
Q ss_pred CChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCC---------ccCCCC-CeEEEEeCCCCCChhhHHHH
Q 047388 111 GSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPT---------NMRGGN-GKVAYIDTEGTFRPDRIVPI 180 (352)
Q Consensus 111 G~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~---------~~gg~~-~~vl~i~~e~~~~~~rl~~~ 180 (352)
|++.||.+|+||+++|++++|+|+||+|||+||++++.+++.+. ..||.+ ++|+||++|++|+++++.++
T Consensus 83 G~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~ 162 (322)
T 2i1q_A 83 SSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM 162 (322)
T ss_dssp SCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH
T ss_pred CChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999877653 334443 79999999999999999999
Q ss_pred HHHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhc-CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHH
Q 047388 181 AERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLT 259 (352)
Q Consensus 181 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~-~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~ 259 (352)
+++++++++.+++++++.+.++.+++.+++..+...+.+ .++++|||||++.+++.++.+++++.+|+..+.++++.|+
T Consensus 163 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~ 242 (322)
T 2i1q_A 163 AEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLN 242 (322)
T ss_dssp HHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 999999988888899999999988888888888888877 6899999999999998777655667788878899999999
Q ss_pred HHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeecCCeEEEEEEeCCCCCcccccccceeeee
Q 047388 260 KISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIIL 339 (352)
Q Consensus 260 ~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~Ks~~~~~~~~~~~~~~~~~ 339 (352)
.+++++|++||++||+++.+++ +| +++..|++|..|+|.+|++|.|++.++..|++++.|+|+.|.+++.
T Consensus 243 ~la~~~~~~vi~~nq~~~~~~~-~~-g~~~~~~g~~~~~~~~d~~i~l~~~~~~~r~~~v~k~~~~p~~~~~-------- 312 (322)
T 2i1q_A 243 KLADLFNCVVLVTNQVSAKPDA-FF-GMAEQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLPDAEAI-------- 312 (322)
T ss_dssp HHHHHTTCEEEEEECEECC---------CCEESSHHHHHHHCSEEEEEEECSTTEEEEEEEECSSSCCEEEE--------
T ss_pred HHHHHhCCEEEEECceeecCCC-CC-CCCcCCCCcHHHHhcCcEEEEEEecCCCeEEEEEEECCCCCCeEEE--------
Confidence 9999999999999999986543 34 5667899999999999999999998888899999999999988777
Q ss_pred EEEeCCCccC
Q 047388 340 IKITPGGIAD 349 (352)
Q Consensus 340 f~I~~~Gi~~ 349 (352)
|.|+++||+|
T Consensus 313 f~I~~~Gi~~ 322 (322)
T 2i1q_A 313 FRITEKGIQD 322 (322)
T ss_dssp EEEETTEEEC
T ss_pred EEEeCCCcCC
Confidence 9999999986
No 5
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=100.00 E-value=2.5e-50 Score=380.55 Aligned_cols=312 Identities=47% Similarity=0.781 Sum_probs=269.0
Q ss_pred hhhhcHHHHHhCCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHHHHhhc-CCCchhhhHHhhhc
Q 047388 26 DLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNF-GYITGSDALLRRKA 104 (352)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 104 (352)
..+.++..| +|+++.++++|+++||+|+++++..++.+|++++|+++.++.++++.+.+.+.. +|.++.++++.+..
T Consensus 32 ~~~~~l~~l--~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (349)
T 1pzn_A 32 KIIRSIEDL--PGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFMRADEYLKKRAT 109 (349)
T ss_dssp ---CCSSCC--TTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHHCSTTSCEEHHHHHHHHHT
T ss_pred cccccHHHc--CCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhhhccccCCccHHHHHhhhcc
Confidence 345567776 699999999999999999999999999999999999999999999999999887 99999999987778
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHc
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERF 184 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 184 (352)
..+++||++.||.+|+||+++|++++|+|+||+||||||++++..++.++..|+.+++|+||++++.+.+.++..+++++
T Consensus 110 ~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~ 189 (349)
T 1pzn_A 110 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNR 189 (349)
T ss_dssp CCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTT
T ss_pred CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999988777777777899999999988888999999999
Q ss_pred CCCcccccccEEEEecCCHHHHHHHHHHHHHHhhc-----CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHH
Q 047388 185 GMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLT 259 (352)
Q Consensus 185 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~-----~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~ 259 (352)
++++..+++|+.+.+.++...+.+++..+...+.. .++++|||||+++++..++.+++++.+|+..+.++++.|+
T Consensus 190 ~~~~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~ 269 (349)
T 1pzn_A 190 GLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLH 269 (349)
T ss_dssp TCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHH
Confidence 99988899999998887777777777766666666 6899999999999998877666778888888899999999
Q ss_pred HHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeecCCeEEEEEEeCCCCCcccccccceeeee
Q 047388 260 KISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIIL 339 (352)
Q Consensus 260 ~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~Ks~~~~~~~~~~~~~~~~~ 339 (352)
++++++|++||++||+...++. +.+++..|++|..|+|.++++|++++..+..|+++++|+|+.|.+++.
T Consensus 270 ~la~~~~~tvii~~h~~~~~~~--~~~~~~~~~~G~~l~~~~~~rL~l~~~~~~~Ri~k~~ks~~~~~~~~~-------- 339 (349)
T 1pzn_A 270 RLANLYDIAVFVTNQVQARPDA--FFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAV-------- 339 (349)
T ss_dssp HHHHHTTCEEEEEEECC-----------------CCCCCTTCSEEEEEEECTTSEEEEEESCSSSSCCSEEE--------
T ss_pred HHHHHcCcEEEEEccccccccc--ccCCccccCCcceEeecCcEEEEEEEcCCCeEEEEEEeCCCCCCeEEE--------
Confidence 9999999999999999875432 235567799999999999999999998888999999999999988776
Q ss_pred EEEeCCCccC
Q 047388 340 IKITPGGIAD 349 (352)
Q Consensus 340 f~I~~~Gi~~ 349 (352)
|+|+++||+|
T Consensus 340 f~It~~Gi~d 349 (349)
T 1pzn_A 340 FSITEKGIED 349 (349)
T ss_dssp EEEETTEEEC
T ss_pred EEEcCCCCCC
Confidence 9999999986
No 6
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=100.00 E-value=3.8e-38 Score=282.10 Aligned_cols=241 Identities=56% Similarity=0.965 Sum_probs=187.8
Q ss_pred cccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH
Q 047388 104 AVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER 183 (352)
Q Consensus 104 ~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 183 (352)
+..+++||++.||++|+||+++|++++|+||||+|||||+.+++.+++.++..|+.+.+++|+++++.+.+.++.+++++
T Consensus 2 ~~~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (243)
T 1n0w_A 2 EIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAER 81 (243)
T ss_dssp CCCEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHH
T ss_pred CceEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999988777777777889999999998888888889999
Q ss_pred cCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHH
Q 047388 184 FGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISE 263 (352)
Q Consensus 184 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~ 263 (352)
++++++++++++.+....+..+....+..+...+...++++||||+++.++...+++.++..+|++.+.+++..|+++++
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~ 161 (243)
T 1n0w_A 82 YGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLAD 161 (243)
T ss_dssp TTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 99998888889988888887777777777777777778999999999999877665545556776667899999999999
Q ss_pred HhCcEEEEEcccccCCCCC-cccCCCCCCCcchhhhhccceEEEEEeecCCeEEEEEEeCCCCCcccccccceeeeeEEE
Q 047388 264 EFNVAVYMTNQVIADPGGG-VFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHIILIKI 342 (352)
Q Consensus 264 ~~~~~viv~~h~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I 342 (352)
++|++||+++|..+..+.. +|.+++..|++|..|.+.+|.++.|++.++..|.+++.|+|+.|.+++. |+|
T Consensus 162 ~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~~~~r~l~v~K~r~~~~~~~~--------f~I 233 (243)
T 1n0w_A 162 EFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAM--------FAI 233 (243)
T ss_dssp HHCCEEEEEC-------------------------CCTTCEEEEEEECSTTEEEEEECCBTTBSCEEEE--------EEE
T ss_pred HcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcCCCeEEEEEEECCCCCCCeEE--------EEE
Confidence 9999999999998755431 2434556789999999999999999997778899999999999877665 999
Q ss_pred eCCCccCCCC
Q 047388 343 TPGGIADAKD 352 (352)
Q Consensus 343 ~~~Gi~~~~~ 352 (352)
+++||+.++|
T Consensus 234 ~~~Gi~~~~~ 243 (243)
T 1n0w_A 234 NADGVGDAKD 243 (243)
T ss_dssp ETTEEECCCC
T ss_pred eCCccccCCC
Confidence 9999999876
No 7
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=100.00 E-value=4e-34 Score=253.79 Aligned_cols=224 Identities=54% Similarity=0.872 Sum_probs=188.3
Q ss_pred cccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH
Q 047388 104 AVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER 183 (352)
Q Consensus 104 ~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 183 (352)
+.++++||++.||++|+||+++|++++|+||||||||||+.+++.....++..|+.+++++|++++..+...++..+++.
T Consensus 3 ~~~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~ 82 (231)
T 4a74_A 3 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQN 82 (231)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred cCCccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999888887777777889999999988788889999999
Q ss_pred cCCCcccccccEEEEecCCHHHHHHHHHHHHHHhh-----cCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHH
Q 047388 184 FGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMS-----EEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRL 258 (352)
Q Consensus 184 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~-----~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L 258 (352)
+++.++++.+|+.+............+..+...+. ..+++++++|+++..+..++++.++..+|++.+.+++..|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l 162 (231)
T 4a74_A 83 RGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADL 162 (231)
T ss_dssp TTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHH
Confidence 99998888899999888777666555555555555 5689999999999999888776666778877778999999
Q ss_pred HHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeecCCeEEEEEEeCCCCCcccccccceeee
Q 047388 259 TKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFSYHII 338 (352)
Q Consensus 259 ~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~~~R~~~i~Ks~~~~~~~~~~~~~~~~ 338 (352)
+++++++|++||+++|..+. +|..|.+.+|.++.|++++...|++++.|+|+.|.++..
T Consensus 163 ~~~~~~~g~tvi~vtH~~~~--------------~g~~~~~~~d~~l~l~~~~~~~r~l~~~K~r~~~~~~~~------- 221 (231)
T 4a74_A 163 HRLANLYDIAVFVTNQVQAN--------------GGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAV------- 221 (231)
T ss_dssp HHHHHHHTCEEEEEEECC-----------------------CCSEEEEEEECTTSCEEEEEESCC--CCSCEE-------
T ss_pred HHHHHHCCCeEEEEeecccC--------------cchhhHhhceEEEEEEecCCCeEEEEEEeCCCCCCceEE-------
Confidence 99999999999999998863 467899999999999997778899999999999988776
Q ss_pred eEEEeCCCccC
Q 047388 339 LIKITPGGIAD 349 (352)
Q Consensus 339 ~f~I~~~Gi~~ 349 (352)
|+|+++||+|
T Consensus 222 -f~i~~~Gl~~ 231 (231)
T 4a74_A 222 -FSITEKGIED 231 (231)
T ss_dssp -EEEETTEEEC
T ss_pred -EEEecccccC
Confidence 9999999986
No 8
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-33 Score=262.19 Aligned_cols=219 Identities=29% Similarity=0.411 Sum_probs=179.6
Q ss_pred ccccccCChhhHHhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH
Q 047388 105 VIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER 183 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~-GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 183 (352)
..+++||++.||.+|+ ||+++|++++|+||||+||||||++++..++. .+++|+||++|+.+.+. ++++
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~------~gg~VlyId~E~s~~~~----ra~r 108 (356)
T 3hr8_A 39 VEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK------MGGVAAFIDAEHALDPV----YAKN 108 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH------TTCCEEEEESSCCCCHH----HHHH
T ss_pred CceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEecccccchH----HHHH
Confidence 6789999999999999 99999999999999999999999999998876 57889999999987765 6778
Q ss_pred cCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchh-cccCCC-cc--hHHHHHHHHHHHHHHH
Q 047388 184 FGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFR-VDFTGR-GE--LADRQQKLGQMLSRLT 259 (352)
Q Consensus 184 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~-~~~~~~-g~--~~~r~~~l~~i~~~L~ 259 (352)
+++++ +++.+....+.++....+. ..+...+++++||||++.+++ .++.++ ++ ...+.+.+.++++.|+
T Consensus 109 lgv~~----~~l~i~~~~~~e~~l~~~~---~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~ 181 (356)
T 3hr8_A 109 LGVDL----KSLLISQPDHGEQALEIVD---ELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIA 181 (356)
T ss_dssp HTCCG----GGCEEECCSSHHHHHHHHH---HHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHH
T ss_pred cCCch----hhhhhhhccCHHHHHHHHH---HHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 88887 6778888777776655443 344456899999999999986 555542 11 1123456788999999
Q ss_pred HHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec---------CCeEEEEEEeCCCCCcccc
Q 047388 260 KISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK---------GEQRVCKVFDAPNLPEAEA 330 (352)
Q Consensus 260 ~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~---------~~~R~~~i~Ks~~~~~~~~ 330 (352)
.++++++++||++||+...+ +.+| +++..++||+.|+|++++||.|++.. +..|.++++|||..|+.+.
T Consensus 182 ~lak~~~~tVI~inqv~~k~-g~~f-g~p~~~~GG~~l~h~~~~rl~l~k~~~~k~g~~~~g~~~~vkvvKnr~~~~~~~ 259 (356)
T 3hr8_A 182 GSVNKSKAVVIFTNQIRMKI-GVMF-GSPETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGNVISVKIVKNKVAPPFKT 259 (356)
T ss_dssp HHHHTSSCEEEEEEESSSCS-SSSS-CSCSSCTHHHHHHHHCSEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCCCCE
T ss_pred HHHHhcCCEEEEEeeeeecc-cccc-CCcccCCCcchhhhhCcEEEEEEeccccccCCcccccEEEEEEEeCCCCCCCce
Confidence 99999999999999997654 3456 67889999999999999999999742 3468999999999987654
Q ss_pred cccceeeeeEEE-eCCCccC
Q 047388 331 ISFSYHIILIKI-TPGGIAD 349 (352)
Q Consensus 331 ~~~~~~~~~f~I-~~~Gi~~ 349 (352)
. .|+| .+.||..
T Consensus 260 ~-------~f~i~~~~Gi~~ 272 (356)
T 3hr8_A 260 A-------QTYIIYGKGIDR 272 (356)
T ss_dssp E-------EEEEETTTBSCH
T ss_pred E-------EEEEeeCCCcCh
Confidence 3 5999 6999874
No 9
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=100.00 E-value=4.5e-32 Score=238.91 Aligned_cols=219 Identities=32% Similarity=0.483 Sum_probs=179.2
Q ss_pred ccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCC
Q 047388 107 KITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGM 186 (352)
Q Consensus 107 ~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~ 186 (352)
+++||++.||++++||+++|++++|+|+||+|||||+.+++. . .+++++|++++..++..++..+++.+++
T Consensus 1 ri~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~------~~~~v~~i~~~~~~~~~~~~~~~~~~~~ 71 (220)
T 2cvh_A 1 MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---L------SGKKVAYVDTEGGFSPERLVQMAETRGL 71 (220)
T ss_dssp CBCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---H------HCSEEEEEESSCCCCHHHHHHHHHTTTC
T ss_pred CcccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---H------cCCcEEEEECCCCCCHHHHHHHHHhcCC
Confidence 489999999999999999999999999999999999999987 2 4679999999987778888888888888
Q ss_pred CcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhC
Q 047388 187 DPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFN 266 (352)
Q Consensus 187 ~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~ 266 (352)
+++.+.+++.+....+..++...+..+...+.. ++++||||+++.++..... ...++..+.++++.|++++++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~~----~~~~~~~~~~~~~~L~~l~~~~~ 146 (220)
T 2cvh_A 72 NPEEALSRFILFTPSDFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEEN----RSGLIAELSRQLQVLLWIARKHN 146 (220)
T ss_dssp CHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGGG----SSTTHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcCc----hHHHHHHHHHHHHHHHHHHHHcC
Confidence 877777888888776666655566666556544 7999999999998654211 11233456788999999999999
Q ss_pred cEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEee-cCCeEEEEEEeCCCCCcccccccceeeeeEEEeCC
Q 047388 267 VAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKG-KGEQRVCKVFDAPNLPEAEAISFSYHIILIKITPG 345 (352)
Q Consensus 267 ~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~-~~~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I~~~ 345 (352)
++||+++|..+..+. ....|+++..|.+.+|.++.|++. .+..|.+.|.|+|+.+.+.. .+|+|+++
T Consensus 147 ~~vi~~~h~~~~~~~-----~~~~p~~~~~~~~~~d~vi~l~~~~~~~~r~l~v~K~r~~~~~~~-------~~f~I~~~ 214 (220)
T 2cvh_A 147 IPVIVINQVHFDSRT-----EMTKPVAEQTLGYRCKDILRLDKLPKPGLRVAVLERHRFRPEGLM-------AYFRITER 214 (220)
T ss_dssp CCEEEEECSSSSCTT-----SSCCSCCCHHHHHTSSEEEEEEECSSTTEEEEEEEECSSSCTTCE-------EEEEEETT
T ss_pred CEEEEEeeEEEcCCC-----CccccCCCcceeecCcEEEEEEEecCCCEEEEEEEeCCCCCCCce-------EEEEEeCC
Confidence 999999999875432 234689999999999999999986 34679999999999988653 35999999
Q ss_pred CccCCC
Q 047388 346 GIADAK 351 (352)
Q Consensus 346 Gi~~~~ 351 (352)
||+.|+
T Consensus 215 Gi~~~~ 220 (220)
T 2cvh_A 215 GIEDVE 220 (220)
T ss_dssp EEEECC
T ss_pred ceecCC
Confidence 998763
No 10
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=100.00 E-value=1.9e-31 Score=243.32 Aligned_cols=220 Identities=18% Similarity=0.236 Sum_probs=157.0
Q ss_pred cccccccCChhhHHhhc----CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHH
Q 047388 104 AVIKITTGSQALDELLG----GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVP 179 (352)
Q Consensus 104 ~~~~i~TG~~~LD~~L~----GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~ 179 (352)
...+++||+++||.+|+ ||+++| +++|+||||+||||||+|++.+++.. +.+++|+|||+|+++++.
T Consensus 3 ~~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~----g~g~~vlyId~E~s~~~~---- 73 (333)
T 3io5_A 3 HMDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQ----YPDAVCLFYDSEFGITPA---- 73 (333)
T ss_dssp ---CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHH----CTTCEEEEEESSCCCCHH----
T ss_pred CCCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhc----CCCceEEEEeccchhhHH----
Confidence 35689999999999999 999999 99999999999999999999988751 136899999999998875
Q ss_pred HHHHcCCCcccccccEEEEecCCHHHH-HHHHHHHHHHhhcCCceEEEEcccccchh-cccCCC-cc--hH--HHHHHHH
Q 047388 180 IAERFGMDPGAVLDNIIYARAYTYEHQ-YNLLLGLAAKMSEEPFRLLIVDSVIALFR-VDFTGR-GE--LA--DRQQKLG 252 (352)
Q Consensus 180 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~l~~l~~~l~~~~~~lvvIDsl~~l~~-~~~~~~-g~--~~--~r~~~l~ 252 (352)
+++++|++. +++.+.++.+.+++ .+++..+. .+.+..+++|||||++++++ .++.+. ++ .+ .+++.+.
T Consensus 74 ra~~lGvd~----d~llv~~~~~~E~~~l~i~~~l~-~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s 148 (333)
T 3io5_A 74 YLRSMGVDP----ERVIHTPVQSLEQLRIDMVNQLD-AIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMK 148 (333)
T ss_dssp HHHHTTCCG----GGEEEEECSBHHHHHHHHHHHHH-TCCTTCCEEEEEECSTTCBCC--------------CTHHHHHH
T ss_pred HHHHhCCCH----HHeEEEcCCCHHHHHHHHHHHHH-HhhccCceEEEEecccccccchhccCccccccccHHHHHHHHH
Confidence 478899987 68888888888877 65554332 24566899999999999985 455432 11 11 2446678
Q ss_pred HHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec---------CCeEEEEEEeCC
Q 047388 253 QMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK---------GEQRVCKVFDAP 323 (352)
Q Consensus 253 ~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~---------~~~R~~~i~Ks~ 323 (352)
+.++.|..+|+++|++||+|||+++ + +.+| +++. +.||+.+ |.+.+||.++|.. |....+++.|++
T Consensus 149 ~~LrkL~~~ak~~~i~vi~tNQV~k-~-G~~f-g~p~-~~GG~~l-~~ss~Rl~lrk~~~ik~~~~~~G~~~~v~~~k~k 223 (333)
T 3io5_A 149 SLFRIVTPYFSTKNIPCIAINHTYE-T-QEMF-SKTV-MGGGTGP-MYSADTVFIIGKRQIKDGSDLQGYQFVLNVEKSR 223 (333)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEC-------------------CCG-GGGSSEEEEEEEC----------CEEEEEEEECS
T ss_pred HHHHHHHHHHHHhCCEEEEECCeee-c-Cccc-CCCC-CCCccee-eeeeEEEEEEeccccccCCccEEeEEEEeEEEEE
Confidence 8889999999999999999999987 4 5567 6665 4899999 9999999999753 345567888888
Q ss_pred CCCcccccccceeeeeEEEe-CCCccC
Q 047388 324 NLPEAEAISFSYHIILIKIT-PGGIAD 349 (352)
Q Consensus 324 ~~~~~~~~~~~~~~~~f~I~-~~Gi~~ 349 (352)
..++.... +|.|. .+||..
T Consensus 224 v~k~k~~~-------~~~i~~~~Gi~~ 243 (333)
T 3io5_A 224 TVKEKSKF-------FIDVKFDGGIDP 243 (333)
T ss_dssp SBCTTCEE-------EEEBCTTSCBCT
T ss_pred EccCCcCC-------cEEEEecCCCCh
Confidence 87765444 35554 356654
No 11
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=99.98 E-value=2.6e-31 Score=250.43 Aligned_cols=219 Identities=29% Similarity=0.421 Sum_probs=165.4
Q ss_pred hcccccccCChhhHHhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHH
Q 047388 103 KAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIA 181 (352)
Q Consensus 103 ~~~~~i~TG~~~LD~~L~-GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~ 181 (352)
....+++||++.||.+|+ |||++|.+++|+|+||+|||+||++++.+++. .+.+|+||++|+++++. ++
T Consensus 39 ~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~------~g~~vlyid~E~s~~~~----~a 108 (356)
T 1u94_A 39 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHALDPI----YA 108 (356)
T ss_dssp CCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEESSCCCCHH----HH
T ss_pred ccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEeCCCCccHH----HH
Confidence 457789999999999999 99999999999999999999999999998876 56799999999988764 36
Q ss_pred HHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchh-cccCCC-cc--hHHHHHHHHHHHHH
Q 047388 182 ERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFR-VDFTGR-GE--LADRQQKLGQMLSR 257 (352)
Q Consensus 182 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~-~~~~~~-g~--~~~r~~~l~~i~~~ 257 (352)
++++++. +++.+.+..+.++..+.+. ..+...++++|||||++.++. .++.+. ++ ...+.+.+.++++.
T Consensus 109 ~~~g~~~----~~l~i~~~~~~e~~~~~~~---~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~ 181 (356)
T 1u94_A 109 RKLGVDI----DNLLCSQPDTGEQALEICD---ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 181 (356)
T ss_dssp HHTTCCG----GGCEEECCSSHHHHHHHHH---HHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHH
T ss_pred HHcCCCh----hheeeeCCCCHHHHHHHHH---HHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHH
Confidence 7788876 6777777766665555443 334456899999999999984 333321 11 00222456889999
Q ss_pred HHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec---------CCeEEEEEEeCCCCCc-
Q 047388 258 LTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK---------GEQRVCKVFDAPNLPE- 327 (352)
Q Consensus 258 L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~---------~~~R~~~i~Ks~~~~~- 327 (352)
|+.++++++++||++||+++.++. +| +++..|.+|..|.|.+++|+.++|.+ +..|.++|.|+|..|+
T Consensus 182 L~~~a~~~~~~VI~~nq~~~~~~~-~f-g~~~~~~gG~~l~~~advrl~l~r~~~~k~g~~~~g~~~~~~i~K~r~~p~~ 259 (356)
T 1u94_A 182 LAGNLKQSNTLLIFINQIRMKIGV-MF-GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPF 259 (356)
T ss_dssp HHHHHHHHTCEEEEEEC----------------CTTCSHHHHHCSEEEEEEEEEEEESSSSEEEEEEEEEEEEESSBCSC
T ss_pred HHHHHHHhCCEEEEEeccccccCc-cc-CCCcccCCCcceeeeccEEEEEEEeeeeccCccccCcEEEEEECCCccCCCC
Confidence 999999999999999999986543 45 46678999999999999999999853 2468899999999985
Q ss_pred ccccccceeeeeEEE-eCCCcc
Q 047388 328 AEAISFSYHIILIKI-TPGGIA 348 (352)
Q Consensus 328 ~~~~~~~~~~~~f~I-~~~Gi~ 348 (352)
+.+. |.| .++||.
T Consensus 260 ~~~~--------f~i~~~~Gi~ 273 (356)
T 1u94_A 260 KQAE--------FQILYGEGIN 273 (356)
T ss_dssp CEEE--------EEEETTTEEC
T ss_pred CcEE--------EEEEcCCCcC
Confidence 4454 999 688886
No 12
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.97 E-value=1.5e-31 Score=291.83 Aligned_cols=265 Identities=29% Similarity=0.369 Sum_probs=205.4
Q ss_pred hhhhcCChhhHHhhhC----CCHHHHHHHHHHHHHHhhcCCCchhhh--HH-hhhcccccccCChhhHHhhc-CCCCCCc
Q 047388 56 NGLMMHTKKHLTGIKG----LSEAKVEKICEAAEKIVNFGYITGSDA--LL-RRKAVIKITTGSQALDELLG-GGIETGA 127 (352)
Q Consensus 56 ~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~i~TG~~~LD~~L~-GGl~~G~ 127 (352)
..+...++.+|.+.++ ++.+ ..+++..+.+.+..+|.++..+ .+ ......+++||+++||++++ ||+++|+
T Consensus 655 ~a~~~~~ps~L~e~~~~~~~v~~~-~~~~i~~a~~~i~~~f~~~~~~~l~~~~~~~~~~i~TG~~eLD~llggGGl~~G~ 733 (2050)
T 3cmu_A 655 PNSTTGSTGSMGHTTGAMSAIDEN-KQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGR 733 (2050)
T ss_dssp CCC----------------CCSTT-HHHHHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTS
T ss_pred hhcccCCHHHHHhhhccccCCcHH-HHHHHHHHHHHHHHhhccccccchhhhhhcccceeecCChHHHHHhccCCcCCCc
Confidence 6777888888877776 8865 6677777887776666665442 11 12467899999999999997 7999999
Q ss_pred EEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQY 207 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 207 (352)
+++|+|+||+|||+||+++|.+++. .+++|+||++|+++.+.. ++++|++. +++++.+..+..++.
T Consensus 734 lilIaG~PG~GKTtLalqlA~~~a~------~g~~VlyiS~Ees~~ql~----A~rlG~~~----~~l~i~~~~~i~~i~ 799 (2050)
T 3cmu_A 734 IVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHALDPIY----ARKLGVDI----DNLLCSQPDTGEQAL 799 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEECTTSCCCHHH----HHHTTCCT----TTCEEECCSSHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh------cCCcEEEEECCCcHHHHH----HHHcCCCc----cceEEecCCCHHHHH
Confidence 9999999999999999999999887 467899999999977652 67888876 788888887777766
Q ss_pred HHHHHHHHHhhcCCceEEEEcccccchh-cccCCC-c----chHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCC
Q 047388 208 NLLLGLAAKMSEEPFRLLIVDSVIALFR-VDFTGR-G----ELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGG 281 (352)
Q Consensus 208 ~~l~~l~~~l~~~~~~lvvIDsl~~l~~-~~~~~~-g----~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~ 281 (352)
..+.+ ...+.++++|||||++.+++ .++.++ + ++..| .+.++++.|+.+|+++|++||++||+++.++.
T Consensus 800 ~~~r~---l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~R--eis~ilr~Lk~lAke~~v~VI~l~Qv~r~~e~ 874 (2050)
T 3cmu_A 800 EICDA---LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAAR--MMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 874 (2050)
T ss_dssp HHHHH---HHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHH--HHHHHHHHHHHHHHTTTCEEEEEECCEECTTC
T ss_pred HHHHH---HhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHH--HHHHHHHHHHHHHHHhCCEEEEeccccccchh
Confidence 65544 33446899999999999987 443221 2 23444 37899999999999999999999999998765
Q ss_pred CcccCCCCCCCcchhhhhccceEEEEEee----cC------CeEEEEEEeCCCCCcccccccceeeeeEEE-eCCCccCC
Q 047388 282 GVFISDPKKPAGGHVLAHAVTIRLMFRKG----KG------EQRVCKVFDAPNLPEAEAISFSYHIILIKI-TPGGIADA 350 (352)
Q Consensus 282 ~~~~~~~~~~~gg~~~~~~~~~~i~L~~~----~~------~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I-~~~Gi~~~ 350 (352)
+| +++.+|+||+.|+|.+++|++|+|. ++ +.|++++.++|..|..++. |+| +++||.++
T Consensus 875 -~f-gdp~~p~GG~~l~h~a~~Rl~Lrr~~~~~~g~~~~G~~~Rv~~v~~sp~lp~~e~~--------f~I~~~~Gi~~~ 944 (2050)
T 3cmu_A 875 -MF-GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAE--------FQILYGEGINFY 944 (2050)
T ss_dssp -CS-SCCEECSSHHHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCEEE--------EEEETTTEECHH
T ss_pred -hc-CCCccccCCceeeeeeeEEEEEEeeccccccccccCCcceEEEEecCCCCCCceEE--------EEEEcCCCcccH
Confidence 45 7889999999999999999999986 45 5799999999999999998 999 99999853
No 13
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.97 E-value=1e-30 Score=246.17 Aligned_cols=220 Identities=27% Similarity=0.444 Sum_probs=167.9
Q ss_pred hcccccccCChhhHHhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHH
Q 047388 103 KAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIA 181 (352)
Q Consensus 103 ~~~~~i~TG~~~LD~~L~-GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~ 181 (352)
....+++||++.||.+|+ ||+++|++++|+|+||+||||||++++.+++. .+++|+|+++|+++++. ++
T Consensus 37 ~~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~------~g~~vlyi~~E~~~~~~----~a 106 (349)
T 2zr9_A 37 QPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA------AGGIAAFIDAEHALDPE----YA 106 (349)
T ss_dssp CCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH------TTCCEEEEESSCCCCHH----HH
T ss_pred ccCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEECCCCcCHH----HH
Confidence 456789999999999999 99999999999999999999999999998876 57899999999987764 46
Q ss_pred HHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchh-cccCCC-cch--HHHHHHHHHHHHH
Q 047388 182 ERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFR-VDFTGR-GEL--ADRQQKLGQMLSR 257 (352)
Q Consensus 182 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~-~~~~~~-g~~--~~r~~~l~~i~~~ 257 (352)
+++|++. +++.+.+..+.++..+++ ...+...++++|||||++.+++ .++.+. ++. ..+.+.+.++++.
T Consensus 107 ~~lG~~~----~~l~i~~~~~~e~~l~~~---~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~ 179 (349)
T 2zr9_A 107 KKLGVDT----DSLLVSQPDTGEQALEIA---DMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRK 179 (349)
T ss_dssp HHTTCCG----GGCEEECCSSHHHHHHHH---HHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHH
T ss_pred HHcCCCH----HHeEEecCCCHHHHHHHH---HHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHH
Confidence 7788887 677777777766655443 3344556899999999999984 333321 111 1223456788899
Q ss_pred HHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec---------CCeEEEEEEeCCCCCcc
Q 047388 258 LTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK---------GEQRVCKVFDAPNLPEA 328 (352)
Q Consensus 258 L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~---------~~~R~~~i~Ks~~~~~~ 328 (352)
|+.+++++|++||++||+++.++. +| +++..|.||..|.|.+++++.+++.+ +..|.++|.|+|..|+.
T Consensus 180 L~~~a~~~~~tVI~inh~~~~~~~-~~-~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~~~~g~~~~~~i~K~~~~p~~ 257 (349)
T 2zr9_A 180 MTGALNNSGTTAIFINELREKIGV-MF-GSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPF 257 (349)
T ss_dssp HHHHHHHHTCEEEEEEECC-------------CCSSHHHHHHHCSEEEEEEEEEEECSSSSCCEEEEEEEEEEESSSCCC
T ss_pred HHHHHHHhCCEEEEEeccccccCc-cc-CCCcccCCchHhhhccceEEEEEEeeeeecCccccCCEEEEEeCCCccCCCC
Confidence 999999999999999999876532 34 45678999999999999999999852 24689999999999854
Q ss_pred -cccccceeeeeEEE-eCCCccC
Q 047388 329 -EAISFSYHIILIKI-TPGGIAD 349 (352)
Q Consensus 329 -~~~~~~~~~~~f~I-~~~Gi~~ 349 (352)
.+ .|.| .++||..
T Consensus 258 ~~~--------~fdi~~~~Gi~~ 272 (349)
T 2zr9_A 258 KQA--------EFDILYGQGISR 272 (349)
T ss_dssp CEE--------EEEEETTSCBCH
T ss_pred ceE--------EEEEEeCCCcCc
Confidence 44 4999 6889863
No 14
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=99.97 E-value=8.6e-31 Score=247.55 Aligned_cols=220 Identities=27% Similarity=0.408 Sum_probs=164.9
Q ss_pred hcccccccCChhhHHhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHH
Q 047388 103 KAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIA 181 (352)
Q Consensus 103 ~~~~~i~TG~~~LD~~L~-GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~ 181 (352)
....+++||++.||.+|+ |||++|++++|+|+||+|||+||++++.+++. .+++|+||++|+++.+. ++
T Consensus 50 ~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~------~g~~vlyi~~E~s~~~~----~a 119 (366)
T 1xp8_A 50 LDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK------AGGTCAFIDAEHALDPV----YA 119 (366)
T ss_dssp CCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH------TTCCEEEEESSCCCCHH----HH
T ss_pred ccCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHH------CCCeEEEEECCCChhHH----HH
Confidence 456789999999999999 99999999999999999999999999999876 56799999999987764 46
Q ss_pred HHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchh-cccCCC-cc--hHHHHHHHHHHHHH
Q 047388 182 ERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFR-VDFTGR-GE--LADRQQKLGQMLSR 257 (352)
Q Consensus 182 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~-~~~~~~-g~--~~~r~~~l~~i~~~ 257 (352)
++++++. +++.+.+..+.++..+.+ ...+...++++|||||++.+++ .++.+. ++ ...+.+.+.++++.
T Consensus 120 ~~~g~d~----~~l~i~~~~~~e~~l~~l---~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~ 192 (366)
T 1xp8_A 120 RALGVNT----DELLVSQPDNGEQALEIM---ELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRK 192 (366)
T ss_dssp HHTTCCG----GGCEEECCSSHHHHHHHH---HHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHH
T ss_pred HHcCCCH----HHceeecCCcHHHHHHHH---HHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHH
Confidence 7788886 677787777766655444 3444556899999999999984 444321 11 01233467889999
Q ss_pred HHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeecC----------CeEEEEEEeCCCCCc
Q 047388 258 LTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKG----------EQRVCKVFDAPNLPE 327 (352)
Q Consensus 258 L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~----------~~R~~~i~Ks~~~~~ 327 (352)
|+.++++++++||++||+++.++. +| +++..|.+|..|++.++++++|++... ..|.++|.|+|..|+
T Consensus 193 L~~~a~~~~~~VI~~nq~~~~~~~-~f-g~p~~~~gg~al~~~a~~rl~L~r~~~~~k~~~~~~g~~~~v~v~Knr~~p~ 270 (366)
T 1xp8_A 193 LTAILSKTGTAAIFINQVREKIGV-MY-GNPETTTGGRALKFYASVRLDVRKIGQPTKVGNDAVANTVKIKTVKNKVAAP 270 (366)
T ss_dssp HHHHHTTTCCEEEEEEEC-----------------CHHHHHHHCSEEEEEEEESCCC------CEEEEEEEEEEESSSCC
T ss_pred HHHHHHHcCCEEEEEEecccccCc-cc-CCccccCCcchhhheeeEEEEEEecchhcccCccccCCEEEEEEEcCCCCCC
Confidence 999999999999999999986543 34 566789999999999999999998652 468999999999986
Q ss_pred ccccccceeeeeEEEe-CCCcc
Q 047388 328 AEAISFSYHIILIKIT-PGGIA 348 (352)
Q Consensus 328 ~~~~~~~~~~~~f~I~-~~Gi~ 348 (352)
.... .|.|. ++||.
T Consensus 271 ~~~~-------~f~i~~~~Gi~ 285 (366)
T 1xp8_A 271 FKEV-------ELALVYGKGFD 285 (366)
T ss_dssp CCEE-------EEEEETTTEEC
T ss_pred CceE-------EEEEEeCCCcc
Confidence 4322 49997 77875
No 15
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=99.97 E-value=7.9e-31 Score=235.27 Aligned_cols=217 Identities=17% Similarity=0.160 Sum_probs=160.6
Q ss_pred hcccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHH
Q 047388 103 KAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAE 182 (352)
Q Consensus 103 ~~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~ 182 (352)
.+.++++||++.||++|+|||++|++++|+|+||+|||+||+|+|.+.+.. .+.+|+|+++|++ +.++.+.+.
T Consensus 7 ~~i~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~-----~~~~v~~~s~E~~--~~~~~~~~~ 79 (251)
T 2zts_A 7 QPVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE-----YGEPGVFVTLEER--ARDLRREMA 79 (251)
T ss_dssp -CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSSC--HHHHHHHHH
T ss_pred CCCCeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh-----cCCCceeecccCC--HHHHHHHHH
Confidence 467899999999999999999999999999999999999999999886542 4678999999986 777888888
Q ss_pred HcCCCccccc--ccEEEEecC---------------CHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchH
Q 047388 183 RFGMDPGAVL--DNIIYARAY---------------TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELA 245 (352)
Q Consensus 183 ~~~~~~~~~~--~~i~~~~~~---------------~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~ 245 (352)
+++.+.+... .++.+.+.. .......++..+...+...+++++|||+++.+......
T Consensus 80 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~------ 153 (251)
T 2zts_A 80 SFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEE------ 153 (251)
T ss_dssp TTTCCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSS------
T ss_pred HcCCChHHHHhcCcchhhhhHHHHhhcccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhccC------
Confidence 8777653221 122222111 01112234555666677789999999999988653211
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeecC---CeEEEEEEeC
Q 047388 246 DRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGKG---EQRVCKVFDA 322 (352)
Q Consensus 246 ~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~---~~R~~~i~Ks 322 (352)
...+.+++..|+.+|+++|+++++++|+.....+. ..+...+++.+|.++.|++... ..|.+.|.|+
T Consensus 154 --~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~--------~~~~~~~~~~aD~vi~l~~~~~~~~~~R~l~I~K~ 223 (251)
T 2zts_A 154 --ERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGK--------LSRYGIEEFIARGVIVLDLQEKNIELKRYVLIRKM 223 (251)
T ss_dssp --GGGHHHHHHHHHHHHHHHCCEEEEEECCC----CC--------SSSSSCGGGGCSEEEEEEEEECSSSEEEEEEEEEE
T ss_pred --hHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccc--------cccCCceeEEeeEEEEEEEEecCCeEEEEEEEEEc
Confidence 12345788999999999999999999997643322 3455678899999999987532 3689999999
Q ss_pred CCCCcccccccceeeeeEEEeCCCcc
Q 047388 323 PNLPEAEAISFSYHIILIKITPGGIA 348 (352)
Q Consensus 323 ~~~~~~~~~~~~~~~~~f~I~~~Gi~ 348 (352)
|+.|..... .+|+|+++||+
T Consensus 224 R~~~~~~~~------~~f~It~~Gi~ 243 (251)
T 2zts_A 224 RETRHSMKK------YPFEIGPNGIV 243 (251)
T ss_dssp TTCCCCCBE------EEEEEETTEEE
T ss_pred CCCCCCCEE------EEEEEeCCcEE
Confidence 998865432 56999999997
No 16
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.96 E-value=5.9e-28 Score=216.15 Aligned_cols=211 Identities=19% Similarity=0.205 Sum_probs=156.4
Q ss_pred cccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcC
Q 047388 106 IKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFG 185 (352)
Q Consensus 106 ~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~ 185 (352)
.+++||++.||++|+||+++|++++|+|+||+|||||+++++.+.+. .+++|+|+++|.+ ...+.+.+.+++
T Consensus 3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~------~~~~v~~~~~e~~--~~~~~~~~~~~g 74 (247)
T 2dr3_A 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK------MGEPGIYVALEEH--PVQVRQNMAQFG 74 (247)
T ss_dssp CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH------TTCCEEEEESSSC--HHHHHHHHHTTT
T ss_pred ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEEccCC--HHHHHHHHHHcC
Confidence 47999999999999999999999999999999999999999988775 5789999999986 667777777888
Q ss_pred CCccccc--ccEEEEecC----------------CHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHH
Q 047388 186 MDPGAVL--DNIIYARAY----------------TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADR 247 (352)
Q Consensus 186 ~~~~~~~--~~i~~~~~~----------------~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r 247 (352)
++++.+. .++.+.... ......++...+.+.+...++++||||+++.+...+ ..++
T Consensus 75 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~------~~~~ 148 (247)
T 2dr3_A 75 WDVKPYEEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINK------PAMA 148 (247)
T ss_dssp CCCHHHHHHTSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTC------GGGH
T ss_pred CCHHHHhhCCcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCC------HHHH
Confidence 8765432 245554410 111233344455555555689999999999886321 1111
Q ss_pred HHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec--C-CeEEEEEEeCCC
Q 047388 248 QQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK--G-EQRVCKVFDAPN 324 (352)
Q Consensus 248 ~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~--~-~~R~~~i~Ks~~ 324 (352)
.+++..|.++++++|++||+++|..+.. . ...+..|.+.+|.++.|++.. + ..|.++|.|+|+
T Consensus 149 ----~~~l~~l~~~~~~~~~~vi~~~h~~~~~--~--------~~~~~~~~~~~D~vi~L~~~~~~~~~~r~l~v~K~R~ 214 (247)
T 2dr3_A 149 ----RSIILQLKRVLAGTGCTSIFVSQVSVGE--R--------GFGGPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRG 214 (247)
T ss_dssp ----HHHHHHHHHHHHHTTCEEEEEEECC--------------CCC-CCHHHHSSEEEEEEEEEETTEEEEEEEEEEETT
T ss_pred ----HHHHHHHHHHHHHCCCeEEEEecCCCCc--c--------cccccccceeEEEEEEEEEEccCCeeEEEEEEEECCC
Confidence 2566778888899999999999998732 1 112235889999999998753 2 368999999999
Q ss_pred CCcccccccceeeeeEEEeCCCccCC
Q 047388 325 LPEAEAISFSYHIILIKITPGGIADA 350 (352)
Q Consensus 325 ~~~~~~~~~~~~~~~f~I~~~Gi~~~ 350 (352)
.+.... +.+|+|+++||+..
T Consensus 215 ~~~~~~------~~~f~i~~~Gi~~~ 234 (247)
T 2dr3_A 215 TSHSMR------RHPFDITDKGIIVY 234 (247)
T ss_dssp SCCCCB------CEEEEEETTEEEEC
T ss_pred CCCCCc------eEEEEEcCCCEEEe
Confidence 887532 35799999999853
No 17
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.95 E-value=1.1e-27 Score=261.81 Aligned_cols=280 Identities=26% Similarity=0.375 Sum_probs=195.4
Q ss_pred CCHHHHHHHHHcCCCchhhhhcCChhhHHhhhC---------CC-HHHHHHHHHHHHHHhhcCCCchhhh--HH-hhhcc
Q 047388 39 INAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKG---------LS-EAKVEKICEAAEKIVNFGYITGSDA--LL-RRKAV 105 (352)
Q Consensus 39 ~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~ 105 (352)
..|...+.+.+ .+.+....++.+|...+| ++ ..+..++++.+.......|.++.-+ .+ .....
T Consensus 286 ~~p~l~~eI~~----~Ire~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~g~~~~~~l~~~~~~~~ 361 (2050)
T 3cmu_A 286 DNPETAKEIEK----KVRELLLSNPNSTTGSTGSGTTGSTGSMAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDV 361 (2050)
T ss_dssp TCHHHHHHHHH----HHHHHHC---------------------CCSTTHHHHHHHHHHHHHHHHCTTSEEEGGGCTTTSC
T ss_pred cChHHHHHHHH----HHHHHhccChhhhhccccccccccccccccchhHHHHHHHHHHHHHHhhCcCcceecccccccCC
Confidence 34555555543 355666666666766555 21 0122344444444443334333322 11 22456
Q ss_pred cccccCChhhHHhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHc
Q 047388 106 IKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERF 184 (352)
Q Consensus 106 ~~i~TG~~~LD~~L~-GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 184 (352)
.+++||++.||.+|+ |||++|++++|+||||+|||+||++++.+++. .+.+|+||++|+++++. +++++
T Consensus 362 ~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~------~G~~vlyis~E~s~~~~----~a~~l 431 (2050)
T 3cmu_A 362 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHALDPI----YARKL 431 (2050)
T ss_dssp CEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEECTTSCCCHH----HHHHT
T ss_pred ceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh------cCCeEEEEEcCCCHHHH----HHHHc
Confidence 789999999999999 99999999999999999999999999999886 56799999999998765 37788
Q ss_pred CCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchh-cccCCC-cc--hHHHHHHHHHHHHHHHH
Q 047388 185 GMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFR-VDFTGR-GE--LADRQQKLGQMLSRLTK 260 (352)
Q Consensus 185 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~-~~~~~~-g~--~~~r~~~l~~i~~~L~~ 260 (352)
|++. +++++.+..+.++..+.+ ...+...++++|||||++.+++ .++.+. ++ ...+.+.+.++++.|+.
T Consensus 432 Gvd~----~~L~I~~~~~~e~il~~~---~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~ 504 (2050)
T 3cmu_A 432 GVDI----DNLLCSQPDTGEQALEIC---DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 504 (2050)
T ss_dssp TCCT----TTCEEECCSSHHHHHHHH---HHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred CCCH----HHeEEeCCCCHHHHHHHH---HHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHH
Confidence 8887 678888877776655443 3445567899999999999984 433221 11 11233457788888999
Q ss_pred HHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec----C-----CeEEEEEEeCCCCCccccc
Q 047388 261 ISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK----G-----EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 261 la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~----~-----~~R~~~i~Ks~~~~~~~~~ 331 (352)
+++++|++||++||+++.++. +| +++..|+||..|+|.+|++++|+|.. + ..+.+++.|+|..|++...
T Consensus 505 lake~~i~VIlinQl~~~vg~-~~-g~p~~psGg~ale~~ADv~l~L~R~~~~~~g~~~~g~~~~v~V~KnR~gp~g~~~ 582 (2050)
T 3cmu_A 505 NLKQSNTLLIFINQIRMKIGV-MF-GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQA 582 (2050)
T ss_dssp HHHTTTCEEEEEECCEECTTC-CS-SCCEECSSHHHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCEE
T ss_pred HHHHcCCeEEEEeeccccccc-cc-CCCcCCCCcchhhhhCCEEEEEEecccccCCccccCcEEEEEEEecCCCCCCceE
Confidence 999999999999999987643 34 46678999999999999999999853 2 2467999999999987543
Q ss_pred ccceeeeeEEE-eCCCcc
Q 047388 332 SFSYHIILIKI-TPGGIA 348 (352)
Q Consensus 332 ~~~~~~~~f~I-~~~Gi~ 348 (352)
.|+| .+.||.
T Consensus 583 -------~f~I~~~~Gi~ 593 (2050)
T 3cmu_A 583 -------EFQILYGEGIN 593 (2050)
T ss_dssp -------EEEEETTTEEC
T ss_pred -------EEEEEeCCCcc
Confidence 4887 677775
No 18
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.95 E-value=1.6e-27 Score=258.13 Aligned_cols=220 Identities=28% Similarity=0.412 Sum_probs=176.2
Q ss_pred hcccccccCChhhHHhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHH
Q 047388 103 KAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIA 181 (352)
Q Consensus 103 ~~~~~i~TG~~~LD~~L~-GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~ 181 (352)
....+++||++.||.+|+ |||++|++++|+|+||+|||+||++++.+++. .+++|+||++|+++++. ++
T Consensus 359 ~~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~------~G~~vlyis~E~s~~~~----~a 428 (1706)
T 3cmw_A 359 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHALDPI----YA 428 (1706)
T ss_dssp GSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEECTTSCCCHH----HH
T ss_pred ccCceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH------hCCCeEEEEccCchHHH----HH
Confidence 457799999999999999 99999999999999999999999999999887 57899999999997764 37
Q ss_pred HHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchh-cccCCC-c--chHHHHHHHHHHHHH
Q 047388 182 ERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFR-VDFTGR-G--ELADRQQKLGQMLSR 257 (352)
Q Consensus 182 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~-~~~~~~-g--~~~~r~~~l~~i~~~ 257 (352)
+++|++. +++.+.+..+.++..+.+ ...+...++++|||||++.+++ .++.+. + ....+.+.+.++++.
T Consensus 429 ~~lGvd~----~~L~i~~~~~~e~~l~~l---~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~ 501 (1706)
T 3cmw_A 429 RKLGVDI----DNLLCSQPDTGEQALEIC---DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 501 (1706)
T ss_dssp HHTTCCG----GGCEEECCSSHHHHHHHH---HHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHH
T ss_pred HHcCCCH----HHeEEcCCCCHHHHHHHH---HHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHH
Confidence 7889887 677787777766655443 3445567899999999999985 332211 1 112344567899999
Q ss_pred HHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec---------CCeEEEEEEeCCCCCcc
Q 047388 258 LTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK---------GEQRVCKVFDAPNLPEA 328 (352)
Q Consensus 258 L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~---------~~~R~~~i~Ks~~~~~~ 328 (352)
|+.+++++|++||++||+++.++. +| +++..|+||..|+|.+|++++|++.+ +..|.++|.|+|..|++
T Consensus 502 L~~~ak~~~v~VI~inQl~~~vg~-~f-g~~~~p~gg~ale~~ADv~L~L~R~~~~~~g~~~~~~~~~l~V~KnR~gp~~ 579 (1706)
T 3cmw_A 502 LAGNLKQSNTLLIFINQIRMKIGV-MF-GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPF 579 (1706)
T ss_dssp HHHHHHHHTCEEEEEECEEECTTC-CS-SCCEEESSCSHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSC
T ss_pred HHHHHHHcCCEEEEEeeccccccc-cc-CCCccCCCCcceeeeCCEEEEEEeccccccCccccCcEEEEEEEecCCCCCC
Confidence 999999999999999999987643 34 45678899999999999999999853 23578999999999987
Q ss_pred cccccceeeeeEEE-eCCCcc
Q 047388 329 EAISFSYHIILIKI-TPGGIA 348 (352)
Q Consensus 329 ~~~~~~~~~~~f~I-~~~Gi~ 348 (352)
... .|.| .+.||.
T Consensus 580 ~~~-------~F~I~~~~Gi~ 593 (1706)
T 3cmw_A 580 KQA-------EFQILYGEGIN 593 (1706)
T ss_dssp CEE-------EEEEETTTEEC
T ss_pred CeE-------EEEEecCCCcc
Confidence 543 4775 566665
No 19
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=99.95 E-value=1.1e-26 Score=216.27 Aligned_cols=212 Identities=13% Similarity=0.077 Sum_probs=153.6
Q ss_pred cccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH
Q 047388 104 AVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER 183 (352)
Q Consensus 104 ~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 183 (352)
...+++||++.||+++ |||++|++++|+|+||+|||+|+++++.+++. .+.+|+||++|++ ...+..++..
T Consensus 47 ~~~~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~------~g~~vl~~slE~s--~~~l~~R~~~ 117 (315)
T 3bh0_A 47 NITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSD------NDDVVNLHSLEMG--KKENIKRLIV 117 (315)
T ss_dssp SCCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT------TTCEEEEEESSSC--HHHHHHHHHH
T ss_pred CCCCccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH------cCCeEEEEECCCC--HHHHHHHHHH
Confidence 3568999999999999 99999999999999999999999999999876 4589999999976 5555444432
Q ss_pred --cCCCcccc-----------------------cccEEEEecCCHHHHHHHHHHHHHHhhcCCce--EEEEcccccchhc
Q 047388 184 --FGMDPGAV-----------------------LDNIIYARAYTYEHQYNLLLGLAAKMSEEPFR--LLIVDSVIALFRV 236 (352)
Q Consensus 184 --~~~~~~~~-----------------------~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~--lvvIDsl~~l~~~ 236 (352)
.+++...+ ..++++..... ....++...+.+...+++++ +|||||++.+...
T Consensus 118 ~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~-~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~ 196 (315)
T 3bh0_A 118 TAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAG-QSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPA 196 (315)
T ss_dssp HHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSC-CBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCS
T ss_pred HHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCC
Confidence 24432111 02455554422 12233444455555666888 9999999998642
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCC--CCCcchhhhhccceEEEEEeec---
Q 047388 237 DFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPK--KPAGGHVLAHAVTIRLMFRKGK--- 311 (352)
Q Consensus 237 ~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~--~~~gg~~~~~~~~~~i~L~~~~--- 311 (352)
. ....|+..+.++++.|+.+|+++|++||+++|+++..+.. ....|. ...++..+++.+|++++|++..
T Consensus 197 ~-----~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r-~~~~p~l~dlr~sg~ie~~aD~vi~L~r~~~~~ 270 (315)
T 3bh0_A 197 K-----ANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQR-QDKRPMLSDLRESGQLEQDADIIEFLYRDDYYD 270 (315)
T ss_dssp C-----TTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTS-SSCCCCGGGGTTTSHHHHHCSEEEEEEEHHHHC
T ss_pred C-----CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccC-CCCCCCHHHhhhhhhhHhhCCEEEEEecccccC
Confidence 1 1123445678999999999999999999999998755432 000110 1245567999999999999853
Q ss_pred -----CCeEEEEEEeCCCCCccccc
Q 047388 312 -----GEQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 312 -----~~~R~~~i~Ks~~~~~~~~~ 331 (352)
...+.+.|.|+|+++.+.+.
T Consensus 271 ~~~~~~~~~~l~v~K~R~G~~g~~~ 295 (315)
T 3bh0_A 271 KESESKNIVEVIIAKHRDGPVGTVS 295 (315)
T ss_dssp TTCTTTTEEEEEEEEETTSCCEEEE
T ss_pred ccccCCCcEEEEEECCcCCCCceEE
Confidence 24678999999999988654
No 20
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.95 E-value=8.6e-27 Score=252.49 Aligned_cols=246 Identities=28% Similarity=0.374 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHhhcCCCchhhh--HH-hhhcccccccCChhhHHhhc-CCCCCCcEEEEecCCCCChhHHHHHHHHHhcC
Q 047388 77 VEKICEAAEKIVNFGYITGSDA--LL-RRKAVIKITTGSQALDELLG-GGIETGAITEAFGEFRSGKTQLAHTLCVCTQL 152 (352)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~i~TG~~~LD~~L~-GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~ 152 (352)
..+++..+.+.....|..+..+ .+ ......+++||+++||++|+ ||+++|++++|+|+||+|||+|+++++.+++.
T Consensus 679 ~~~~l~~~~~~ie~~~~~g~~~~l~~~~~~~~~~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~ 758 (1706)
T 3cmw_A 679 KQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 758 (1706)
T ss_dssp HHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCcccccccccccccccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHH
Confidence 3445555554444333332221 11 12356799999999999998 99999999999999999999999999999886
Q ss_pred CCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEccccc
Q 047388 153 PTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIA 232 (352)
Q Consensus 153 ~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~ 232 (352)
.+++|+||++|+++.+. ++++++++. +++++.+..+..+..+. +.+.+...++++|||||++.
T Consensus 759 ------~g~~VlyiS~Ees~~ql----~A~~lGvd~----~~L~i~~~~~leei~~~---l~~lv~~~~~~lVVIDsLq~ 821 (1706)
T 3cmw_A 759 ------EGKTCAFIDAEHALDPI----YARKLGVDI----DNLLCSQPDTGEQALEI---CDALARSGAVDVIVVDSVAA 821 (1706)
T ss_dssp ------TTCCEEEECTTSCCCHH----HHHHTTCCG----GGCEEECCSSHHHHHHH---HHHHHHHTCCSEEEESCSTT
T ss_pred ------cCCCeEEEeccchHHHH----HHHHcCCCh----hheEEecCCcHHHHHHH---HHHHHHccCCCEEEEechhh
Confidence 56799999999997664 378888887 67788877766654443 44455567899999999999
Q ss_pred chh-cccCCC-cc--hHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEE
Q 047388 233 LFR-VDFTGR-GE--LADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFR 308 (352)
Q Consensus 233 l~~-~~~~~~-g~--~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~ 308 (352)
+++ .++.+. ++ +..+.+.+.++++.|+.+++++|++||++||+++.++. +| +++..|.++..|+|.+|++++|+
T Consensus 822 l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~-~~-Gdp~~p~gs~~Leq~ADvvl~L~ 899 (1706)
T 3cmw_A 822 LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV-MF-GNPETTTGGNALKFYASVRLDIR 899 (1706)
T ss_dssp CCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTC-CS-SCCEEESSCSHHHHHEEEEEEEE
T ss_pred hccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccc-cc-CCccccCCcchhhheeeEEEEEE
Confidence 974 332221 12 12233467888999999999999999999999987643 34 46677899999999999999998
Q ss_pred eec---------CCeEEEEEEeCCCCCcccccccceeeeeEEE-eCCCcc
Q 047388 309 KGK---------GEQRVCKVFDAPNLPEAEAISFSYHIILIKI-TPGGIA 348 (352)
Q Consensus 309 ~~~---------~~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I-~~~Gi~ 348 (352)
|.. +..|.+++.|+|..|+++.. .|+| .+.||.
T Consensus 900 R~~~~~~g~~~~g~~r~l~V~KnR~gp~~~~~-------~F~I~~~~Gi~ 942 (1706)
T 3cmw_A 900 RIGAVKEGENVVGSETRVKVVKNKIAAPFKQA-------EFQILYGEGIN 942 (1706)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEESSSCSCCEE-------EEEEETTTEEC
T ss_pred ecccccccccccCcEEEEEEEecCCCCCCceE-------EEEEEcCCCcc
Confidence 753 23689999999999987543 5999 787875
No 21
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.94 E-value=5.8e-26 Score=224.45 Aligned_cols=228 Identities=11% Similarity=0.088 Sum_probs=163.5
Q ss_pred hcCCCchhhhHHhh------hccccccc-CChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCC
Q 047388 89 NFGYITGSDALLRR------KAVIKITT-GSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNG 161 (352)
Q Consensus 89 ~~~~~~~~~~~~~~------~~~~~i~T-G~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~ 161 (352)
..++.++.++.+.. ....+++| |++.||+++ ||+++|++++|+|+||+|||+|++++|.+++.. .+.
T Consensus 199 ~~~i~~~~~~~~~i~~~~~~~~~~~i~t~G~~~LD~~l-gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~-----~g~ 272 (503)
T 1q57_A 199 PDGVVSALSLRERIREHLSSEESVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA-----MGK 272 (503)
T ss_dssp CSSEEEGGGGHHHHHHHHHHSCTTCSCCSSCTTHHHHH-CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT-----SCC
T ss_pred HHHhcChHHHHHHHHhhhcccccCCccccchhhhhHhh-cccCCCeEEEEeecCCCCchHHHHHHHHHHHHh-----cCC
Confidence 44555666665432 34678999 999999999 699999999999999999999999999998862 267
Q ss_pred eEEEEeCCCCCChhhHHHH--HHHcCCCccc--------------------c--cccEEEEecCCHHHHHHHHHHHHHHh
Q 047388 162 KVAYIDTEGTFRPDRIVPI--AERFGMDPGA--------------------V--LDNIIYARAYTYEHQYNLLLGLAAKM 217 (352)
Q Consensus 162 ~vl~i~~e~~~~~~rl~~~--~~~~~~~~~~--------------------~--~~~i~~~~~~~~~~~~~~l~~l~~~l 217 (352)
+|+||++|++ ..++... +...+++... + ..++++.+........+++..+.+..
T Consensus 273 ~vl~~s~E~s--~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~ 350 (503)
T 1q57_A 273 KVGLAMLEES--VEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMR 350 (503)
T ss_dssp CEEEEESSSC--HHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHH
T ss_pred cEEEEeccCC--HHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHH
Confidence 9999999987 5555443 3444554321 0 13466665432233445555666666
Q ss_pred hcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCc---ccCCC--CCCC
Q 047388 218 SEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGV---FISDP--KKPA 292 (352)
Q Consensus 218 ~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~---~~~~~--~~~~ 292 (352)
.++++++|||||++.+.... . ...|++.+.++++.|+.+|+++|++||+++|+++ .++.. -...+ ....
T Consensus 351 ~~~~~~lvVID~l~~l~~~~---~--~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r-~~~~~~~~~~~~p~l~dlr 424 (503)
T 1q57_A 351 SGLGCDVIILDHISIVVSAS---G--ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKN-PDKGKAHEEGRPVSITDLR 424 (503)
T ss_dssp HTTCCSEEEEECTTCCCSCC---S--CCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCC-CSSSSCSTTCCCCCSSSCS
T ss_pred HhcCCCEEEEccchhcCCCC---C--CCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCc-hhccCccccCCCCChhhhc
Confidence 67799999999999875321 1 1234456789999999999999999999999997 33210 00011 1235
Q ss_pred cchhhhhccceEEEEEeecC----CeEEEEEEeCC-CCCcccc
Q 047388 293 GGHVLAHAVTIRLMFRKGKG----EQRVCKVFDAP-NLPEAEA 330 (352)
Q Consensus 293 gg~~~~~~~~~~i~L~~~~~----~~R~~~i~Ks~-~~~~~~~ 330 (352)
++..+++.+|++|+|++... ..|.+.|.|+| +++.+..
T Consensus 425 ~s~~ie~~aD~vi~l~r~~~~~~~~~~~l~v~K~R~~G~~g~~ 467 (503)
T 1q57_A 425 GSGALRQLSDTIIALERNQQGDMPNLVLVRILKCRFTGDTGIA 467 (503)
T ss_dssp SSSHHHHHCSEEEEEEECSSSSCTTEEEEEEEEETTTCCCEEE
T ss_pred cchHhhecCcEEEEEEeCCcCCCCCeEEEEEEeccCCCCCCce
Confidence 67789999999999998642 46899999999 7888765
No 22
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=99.94 E-value=9.1e-26 Score=219.60 Aligned_cols=212 Identities=17% Similarity=0.181 Sum_probs=151.6
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHH--HH
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPI--AE 182 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~--~~ 182 (352)
..+++||++.||+++ ||+++|++++|+|+||+|||+||++++.+++.. .+.+|+||++|++ ...+..+ +.
T Consensus 180 ~~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-----~g~~vl~~slE~~--~~~l~~R~~~~ 251 (444)
T 2q6t_A 180 VAGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-----EGVGVGIYSLEMP--AAQLTLRMMCS 251 (444)
T ss_dssp ---CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-----TCCCEEEEESSSC--HHHHHHHHHHH
T ss_pred CCcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEECCCC--HHHHHHHHHHH
Confidence 468999999999999 999999999999999999999999999998762 3678999999987 5444443 34
Q ss_pred HcCCCccccc---------------------ccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCC
Q 047388 183 RFGMDPGAVL---------------------DNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGR 241 (352)
Q Consensus 183 ~~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~ 241 (352)
..+++...+. .++++.+... ....++...+.+...++++++||||+++.+.... .+.
T Consensus 252 ~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~-~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~-~~~ 329 (444)
T 2q6t_A 252 EARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPD-LTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPG-SGK 329 (444)
T ss_dssp HTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTT-CBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC-----
T ss_pred HcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCc-CCC
Confidence 4555443221 1345544321 1123334445555556789999999999985421 011
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCC-----cchhhhhccceEEEEEeecC----
Q 047388 242 GELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPA-----GGHVLAHAVTIRLMFRKGKG---- 312 (352)
Q Consensus 242 g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~-----gg~~~~~~~~~~i~L~~~~~---- 312 (352)
....|++.+.++++.|+.+|++++++||+++|+++..+.. ..+.|. ++..+++.+|++++|.+...
T Consensus 330 -~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r----~~~~p~l~dlr~Sg~ie~~aD~vi~L~r~~~~~~~ 404 (444)
T 2q6t_A 330 -SGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEAR----PNKRPMLSDLRESGSIEQDADLVMFIYRDEYYNPH 404 (444)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSS----SSCSCCGGGGGGGCTTGGGCSEEEEEEEGGGTCSS
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccC----CCCCCChHHhcchhHHHHhCCEEEEEecccccCCc
Confidence 1124556788999999999999999999999998854432 112344 34478999999999998631
Q ss_pred ----CeEEEEEEeCCCCCccccc
Q 047388 313 ----EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 313 ----~~R~~~i~Ks~~~~~~~~~ 331 (352)
..|.+.|.|+|++|.+...
T Consensus 405 ~~~~~~~~l~i~K~R~g~~g~~~ 427 (444)
T 2q6t_A 405 SEKAGIAEIIVGKQRNGPTGTVE 427 (444)
T ss_dssp SSCCSEEEEEEEECSSSCCEEEE
T ss_pred CCCCCeEEEEEEecCCCCceEEE
Confidence 4688999999999988654
No 23
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=99.93 E-value=3.9e-26 Score=212.84 Aligned_cols=210 Identities=16% Similarity=0.204 Sum_probs=153.2
Q ss_pred hcccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHH-
Q 047388 103 KAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIA- 181 (352)
Q Consensus 103 ~~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~- 181 (352)
....+++||++.||+++ |||++|++++|+|+||+|||+|++++|.+++. .+.+|+||+.|++ ...+..++
T Consensus 24 ~~~~gi~TG~~~LD~~~-gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~------~g~~Vl~fSlEms--~~ql~~Rll 94 (338)
T 4a1f_A 24 LEVTGIPTGFVQLDNYT-SGFNKGSLVIIGARPSMGKTSLMMNMVLSALN------DDRGVAVFSLEMS--AEQLALRAL 94 (338)
T ss_dssp TCCCSBCCSCHHHHHHH-CSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH------TTCEEEEEESSSC--HHHHHHHHH
T ss_pred CCcCcccCCChHHHHHh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH------cCCeEEEEeCCCC--HHHHHHHHH
Confidence 35678999999999999 79999999999999999999999999999887 5789999999987 44444333
Q ss_pred -HHcCCCcccc---------------------cccEEEEecCCHHHHHHHHHHHHHHhhcC-CceEEEEcccccchhccc
Q 047388 182 -ERFGMDPGAV---------------------LDNIIYARAYTYEHQYNLLLGLAAKMSEE-PFRLLIVDSVIALFRVDF 238 (352)
Q Consensus 182 -~~~~~~~~~~---------------------~~~i~~~~~~~~~~~~~~l~~l~~~l~~~-~~~lvvIDsl~~l~~~~~ 238 (352)
...+++...+ -.++++.+... ....++...+.+....+ ++++||||+++.+.....
T Consensus 95 s~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~-~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~ 173 (338)
T 4a1f_A 95 SDLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSY-VRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKA 173 (338)
T ss_dssp HHHHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTT-CCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHH
T ss_pred HHhhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCC-CcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCC
Confidence 2223332111 02355554331 12334444455555666 899999999998854321
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCC-----CcchhhhhccceEEEEEeec--
Q 047388 239 TGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKP-----AGGHVLAHAVTIRLMFRKGK-- 311 (352)
Q Consensus 239 ~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~-----~gg~~~~~~~~~~i~L~~~~-- 311 (352)
...|+..+.++++.|+.+|++++|+||+++|+++..+.. ..+.| .++..+++.+|++++|.|..
T Consensus 174 -----~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e~r----~dkrP~lsDLreSg~IeqdAD~Vl~l~R~~~y 244 (338)
T 4a1f_A 174 -----TKERHEQIAEISRELKTLARELEIPIIALVQLNRSLENR----DDKRPILSDIKDSGGIEQDADIVLFLYRGYIY 244 (338)
T ss_dssp -----HHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGGGS----SSCSCCGGGSEETTEECCCCSEEEEEECHHHH
T ss_pred -----CCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCcccccc----ccCCCChHhcccchhhhhhCcEEEEEecchhc
Confidence 123445678999999999999999999999999865432 11223 45678999999999999752
Q ss_pred ---------------C-------------------------CeEEEEEEeCCCCCccccc
Q 047388 312 ---------------G-------------------------EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 312 ---------------~-------------------------~~R~~~i~Ks~~~~~~~~~ 331 (352)
. ...-+.|.|+|++|.+.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiiiaK~R~G~~g~v~ 304 (338)
T 4a1f_A 245 QMRAEDNKIDKLKKEGKIEEAQELYLKVNEERRIHKQNGSIEEAEIIVAKNRNGATGTVY 304 (338)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTSCCEEEE
T ss_pred ccccccccccccccccccccccchhhhhhhhhcccccccCCCceEEEEEeccCCCCceEE
Confidence 1 1245788999999998765
No 24
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=99.93 E-value=3e-25 Score=215.33 Aligned_cols=211 Identities=14% Similarity=0.100 Sum_probs=153.2
Q ss_pred cccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH
Q 047388 104 AVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER 183 (352)
Q Consensus 104 ~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 183 (352)
...+++||++.||+++ ||+++|++++|+|+||+|||+|++++|.+++. .+.+|+||++|++...-..+.++..
T Consensus 176 ~~~gi~TG~~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~------~g~~vl~fSlEms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 176 NITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSD------NDDVVNLHSLEMGKKENIKRLIVTA 248 (444)
T ss_dssp SCCSBCCSCHHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH------TTCEEEEECSSSCTTHHHHHHHHHH
T ss_pred CCCCcCCCcHHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH------cCCEEEEEECCCCHHHHHHHHHHHH
Confidence 3568999999999999 79999999999999999999999999999887 4679999999988443322222333
Q ss_pred cCCCcccc-----------------------cccEEEEecCCHHHHHHHHHHHHHHhhcCCce--EEEEcccccchhccc
Q 047388 184 FGMDPGAV-----------------------LDNIIYARAYTYEHQYNLLLGLAAKMSEEPFR--LLIVDSVIALFRVDF 238 (352)
Q Consensus 184 ~~~~~~~~-----------------------~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~--lvvIDsl~~l~~~~~ 238 (352)
.+++...+ ..++++.+... ....++...+++...+++++ +|||||++.+.....
T Consensus 249 ~~i~~~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~-~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~ 327 (444)
T 3bgw_A 249 GSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAG-QSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKA 327 (444)
T ss_dssp SCCCHHHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSS-CBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCS
T ss_pred cCCCHHHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCC
Confidence 34432110 12455544321 12233344455555667899 999999998864321
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCC-----CcchhhhhccceEEEEEeecC-
Q 047388 239 TGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKP-----AGGHVLAHAVTIRLMFRKGKG- 312 (352)
Q Consensus 239 ~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~-----~gg~~~~~~~~~~i~L~~~~~- 312 (352)
...|.+.+.++++.|+.+|+++|++||+++|+++..+.. ..+.| .++..+++.+|++++|++...
T Consensus 328 -----~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r----~~krp~lsdlr~Sg~ieq~aD~Vi~L~r~~~~ 398 (444)
T 3bgw_A 328 -----NDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQR----QDKRPMLSDLRESGQLEQDADIIEFLYRDDYY 398 (444)
T ss_dssp -----SSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGS----SCCCCCGGGCCSCSHHHHHCSEEEECCBGGGT
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccc----CCCCCchhhhhhhhhHHhhCCEEEEEeccccc
Confidence 123556788999999999999999999999998754322 11223 345579999999999998531
Q ss_pred -------CeEEEEEEeCCCCCccccc
Q 047388 313 -------EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 313 -------~~R~~~i~Ks~~~~~~~~~ 331 (352)
..+.+.|.|+|++|.+...
T Consensus 399 ~~~~~~~~~~~l~i~K~R~G~~g~v~ 424 (444)
T 3bgw_A 399 DKESESKNIVEVIIAKHRDGPVGTVS 424 (444)
T ss_dssp CTTCSSTTEEEEEEEEESSSCCEEEE
T ss_pred cccccCCCeEEEEEEcccCCCCeEEE
Confidence 3578999999999988654
No 25
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.93 E-value=1.7e-24 Score=191.76 Aligned_cols=207 Identities=24% Similarity=0.297 Sum_probs=148.3
Q ss_pred cccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcC
Q 047388 106 IKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFG 185 (352)
Q Consensus 106 ~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~ 185 (352)
.+++||++.||+++.||+++|+++.|+|+||+|||||+.+++..... .+++++|++.+.. ...+...+..++
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~------~~~~v~~~~~~~~--~~~~~~~~~~~~ 74 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR------DGDPCIYVTTEES--RDSIIRQAKQFN 74 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH------HTCCEEEEESSSC--HHHHHHHHHHTT
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH------CCCeEEEEEcccC--HHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999999977664 4678999999875 556666666777
Q ss_pred CCcccccc-cEEEEecC-------------CHHHHHHHHHHHHHHhhcCCce--EEEEcccccchhcccCCCcchHHHHH
Q 047388 186 MDPGAVLD-NIIYARAY-------------TYEHQYNLLLGLAAKMSEEPFR--LLIVDSVIALFRVDFTGRGELADRQQ 249 (352)
Q Consensus 186 ~~~~~~~~-~i~~~~~~-------------~~~~~~~~l~~l~~~l~~~~~~--lvvIDsl~~l~~~~~~~~g~~~~r~~ 249 (352)
++.+.+.. ++.+.... +..+. ...+.+.+...+++ +||+|+++.++..+. ..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~llilDe~~~~~~~d~------~~--- 142 (235)
T 2w0m_A 75 WDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEEL---VNKVIEAKQKLGYGKARLVIDSVSALFLDKP------AM--- 142 (235)
T ss_dssp CCCGGGBTTTEEEEECCC----CTTBCSSCCHHHH---HHHHHHHHHHHCSSCEEEEEETGGGGSSSCG------GG---
T ss_pred chHHHHhhCCEEEEeccccccCceeeecCCCHHHH---HHHHHHHHHhhCCCceEEEEECchHhhcCCH------HH---
Confidence 76654322 33333221 22222 23333444445789 999999998853221 11
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEeec--C-CeEEEEEEeCCCCC
Q 047388 250 KLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKGK--G-EQRVCKVFDAPNLP 326 (352)
Q Consensus 250 ~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~~--~-~~R~~~i~Ks~~~~ 326 (352)
..++++.|++++++++++||+++|..+..++. . . ..+.+.+|.++.|.+.. + ..|.++|.|+|..+
T Consensus 143 -~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~--------~-~-~~~~~~~d~vi~l~~~~~~~~~~r~l~v~K~r~~~ 211 (235)
T 2w0m_A 143 -ARKISYYLKRVLNKWNFTIYATSQYAITTSQA--------F-G-FGVEHVADGIIRFRRMIRNGELHRYILIEKMRQTD 211 (235)
T ss_dssp -HHHHHHHHHHHHHHTTEEEEEEEC---------------------CHHHHCSEEEEEEEEEETTEEEEEEEEEEETTCC
T ss_pred -HHHHHHHHHHHHHhCCCeEEEEeccCcccccc--------c-c-cchheeeeEEEEEEEEecCCcEEEEEEEEeccCCc
Confidence 23788889999999999999999998521111 1 1 46889999999999763 2 35899999999987
Q ss_pred cccccccceeeeeEEEeCC-CccC
Q 047388 327 EAEAISFSYHIILIKITPG-GIAD 349 (352)
Q Consensus 327 ~~~~~~~~~~~~~f~I~~~-Gi~~ 349 (352)
.... +.+|+|+++ ||+-
T Consensus 212 ~~~~------~~~f~i~~~~Gi~~ 229 (235)
T 2w0m_A 212 HDKH------VWEIDIVNGKGIVL 229 (235)
T ss_dssp CCCS------CEEEEEETTTEEEE
T ss_pred ccce------eEEEEEcCCCCeEE
Confidence 6532 357999999 9874
No 26
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.92 E-value=9.6e-25 Score=212.97 Aligned_cols=208 Identities=15% Similarity=0.153 Sum_probs=151.2
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHH--HH
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPI--AE 182 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~--~~ 182 (352)
..+++||++.||+++ ||+++|++++|+|+||+|||+|+++++.+++.. .+.+|+||+.|++ ...+..+ +.
T Consensus 183 ~~~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~-----~g~~Vl~~s~E~s--~~~l~~r~~~~ 254 (454)
T 2r6a_A 183 ITGIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATK-----TNENVAIFSLEMS--AQQLVMRMLCA 254 (454)
T ss_dssp CCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH-----SSCCEEEEESSSC--HHHHHHHHHHH
T ss_pred CCCCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh-----CCCcEEEEECCCC--HHHHHHHHHHH
Confidence 468999999999999 899999999999999999999999999988752 3568999999987 4444444 33
Q ss_pred HcCCCcccc---------------------cccEEEEecC--CHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccC
Q 047388 183 RFGMDPGAV---------------------LDNIIYARAY--TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFT 239 (352)
Q Consensus 183 ~~~~~~~~~---------------------~~~i~~~~~~--~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~ 239 (352)
..+++.+.+ ..++++.... +..++ ...+.+....+++++||||+++.+......
T Consensus 255 ~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i---~~~~~~l~~~~~~~livID~l~~~~~~~~~ 331 (454)
T 2r6a_A 255 EGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDI---RAKCRRLKQESGLGMIVIDYLQLIQGSGRS 331 (454)
T ss_dssp HHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHH---HHHHHHHHTTTCCCEEEEECGGGSCCSCC-
T ss_pred HcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHH---HHHHHHHHHHcCCCEEEEccHHHhccCCCC
Confidence 455543221 1234444432 33333 334445555678999999999998643211
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCC-----cchhhhhccceEEEEEeecC--
Q 047388 240 GRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPA-----GGHVLAHAVTIRLMFRKGKG-- 312 (352)
Q Consensus 240 ~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~-----gg~~~~~~~~~~i~L~~~~~-- 312 (352)
...|...+.++++.|+.+|+++|++||+++|+++..+.. ..+.|. ++..+++.+|.+++|++.+.
T Consensus 332 ----~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~----~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~~ 403 (454)
T 2r6a_A 332 ----KENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQR----QDKRPMMSDIRESGSIEQDADIVAFLYRDDYYN 403 (454)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC-------CCCTHHHHTTCSHHHHCSEEEEEEETTC--
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccC----CCCCCcHHHhhccchhHhhCCEEEEEecccccC
Confidence 123445678999999999999999999999999865432 112344 34478999999999998642
Q ss_pred ------CeEEEEEEeCCCCCccccc
Q 047388 313 ------EQRVCKVFDAPNLPEAEAI 331 (352)
Q Consensus 313 ------~~R~~~i~Ks~~~~~~~~~ 331 (352)
..+.+.|.|+|++|.+...
T Consensus 404 ~~~~~~~~~~l~i~K~R~G~~g~v~ 428 (454)
T 2r6a_A 404 KDSENKNIIEIIIAKQRNGPVGTVQ 428 (454)
T ss_dssp -----CCEEEEEEEEESSSCCEEEE
T ss_pred cccCCCCeEEEEEecccCCCCeEEE
Confidence 4588999999999987654
No 27
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.90 E-value=2e-22 Score=180.48 Aligned_cols=216 Identities=17% Similarity=0.140 Sum_probs=144.2
Q ss_pred cccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH
Q 047388 104 AVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER 183 (352)
Q Consensus 104 ~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 183 (352)
...+++||++.||++++||+++|+++.|.||||||||||+.+++.....+ .+++++|++.+.. ...+...+++
T Consensus 8 ~~~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~ 80 (251)
T 2ehv_A 8 PVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE-----YGEPGVFVTLEER--ARDLRREMAS 80 (251)
T ss_dssp CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSSC--HHHHHHHHHT
T ss_pred ccceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEEccCC--HHHHHHHHHH
Confidence 45689999999999999999999999999999999999999998655521 4577899998875 5556666777
Q ss_pred cCCCcccc--cccEEEEecCCH---------------HHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHH
Q 047388 184 FGMDPGAV--LDNIIYARAYTY---------------EHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELAD 246 (352)
Q Consensus 184 ~~~~~~~~--~~~i~~~~~~~~---------------~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~ 246 (352)
+++.++.. ..++.+...... ....+....+...+...+++++++|++++....... ....
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d---~~~~ 157 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEE---ERKI 157 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSS---GGGH
T ss_pred cCCChHHHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCC---HHHH
Confidence 78776432 122333221111 012233344445555678999999999988752111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhcc-ceEEEEEeecC---CeEEEEEEeC
Q 047388 247 RQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAV-TIRLMFRKGKG---EQRVCKVFDA 322 (352)
Q Consensus 247 r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~-~~~i~L~~~~~---~~R~~~i~Ks 322 (352)
+ . .+...++.+ ++.|++||+++|........ ..+..+.+.+ |.++.|++... ..|.+++.|+
T Consensus 158 ~-~---~l~~l~~~l-~~~g~tii~vtH~~~~~~~~---------~~~~~i~~~~aD~vi~l~~~~~~~~~~r~l~i~K~ 223 (251)
T 2ehv_A 158 R-E---VLLKLNTIL-LEMGVTTILTTEAPDPQHGK---------LSRYGIEEFIARGVIVLDLQEKNIELKRYVLIRKM 223 (251)
T ss_dssp H-H---HHHHHHHHH-HHHCCEEEEEECCC----CC---------SSSSSCGGGGCSEEEEEEEEECSSSEEEEEEEEEE
T ss_pred H-H---HHHHHHHHH-HHCCCeEEEEECCCCCCccc---------ccccChhhEeeeEEEEEeeeccCCeeEEEEEEEEc
Confidence 1 1 233334444 56799999999987633101 1223456777 99999986532 3588999999
Q ss_pred CCCCcccccccceeeeeEEEeCCCccC
Q 047388 323 PNLPEAEAISFSYHIILIKITPGGIAD 349 (352)
Q Consensus 323 ~~~~~~~~~~~~~~~~~f~I~~~Gi~~ 349 (352)
|..+.... |..|+|+++||+-
T Consensus 224 r~~~~~~~------~~~~~i~~~Gi~v 244 (251)
T 2ehv_A 224 RETRHSMK------KYPFEIGPNGIVV 244 (251)
T ss_dssp TTCCCCCB------EEEEEEETTEEEE
T ss_pred cCCCcCCc------eEEEEECCCCeEE
Confidence 98875422 4679999999974
No 28
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.88 E-value=1.1e-21 Score=180.88 Aligned_cols=227 Identities=11% Similarity=0.099 Sum_probs=143.7
Q ss_pred hccccccc-CChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHH
Q 047388 103 KAVIKITT-GSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIA 181 (352)
Q Consensus 103 ~~~~~i~T-G~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~ 181 (352)
....+++| |++.||.++ +|+++|+++.|+|+||+|||||+++++...... .+.+|+|++.|.+ ...+....
T Consensus 12 ~~~~~i~t~g~~~Ld~i~-~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~-----~G~~v~~~~~e~~--~~~~~~r~ 83 (296)
T 1cr0_A 12 EESVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA-----MGKKVGLAMLEES--VEETAEDL 83 (296)
T ss_dssp CCCCCBCCCSCTTHHHHH-CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT-----SCCCEEEEESSSC--HHHHHHHH
T ss_pred CCcCCcccCCHHHHHHHh-cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH-----cCCeEEEEeCcCC--HHHHHHHH
Confidence 45678999 999999998 899999999999999999999999999887652 2458999999975 43332221
Q ss_pred H--HcCCCcc--------------------ccc--ccEEEEec---CCHHHHHHHHHHHHHHhhcCCceEEEEcccccch
Q 047388 182 E--RFGMDPG--------------------AVL--DNIIYARA---YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALF 234 (352)
Q Consensus 182 ~--~~~~~~~--------------------~~~--~~i~~~~~---~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~ 234 (352)
. ..+.+.. .++ .++.+... .+..++ ...+.......++++||||+++.+.
T Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l---~~~~~a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 84 IGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRL---LAKLAYMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHTTCCGGGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHH---HHHHHHHHHTTCCSEEEEEEEC---
T ss_pred HHHHcCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHH---HHHHHHHHHhcCCCEEEEcCccccC
Confidence 1 1122210 111 13444432 334443 2333333344689999999999975
Q ss_pred hcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCc--ccCC--CCCCCcchhhhhccceEEEEEee
Q 047388 235 RVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGV--FISD--PKKPAGGHVLAHAVTIRLMFRKG 310 (352)
Q Consensus 235 ~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~--~~~~--~~~~~gg~~~~~~~~~~i~L~~~ 310 (352)
... . .. .+...+.++++.|+.+|+++|++||+++|..+..+... -... .....++..+.+.+|.+++|.++
T Consensus 161 ~~~-~---~~-d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 161 SAS-G---ES-DERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCC-C---CC-CHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 321 0 01 12133568999999999999999999999974111000 0000 01134556899999999999986
Q ss_pred cC----CeEEEEEEeCC-CCCcccc-cccceeeeeEEEeCCCccCCC
Q 047388 311 KG----EQRVCKVFDAP-NLPEAEA-ISFSYHIILIKITPGGIADAK 351 (352)
Q Consensus 311 ~~----~~R~~~i~Ks~-~~~~~~~-~~~~~~~~~f~I~~~Gi~~~~ 351 (352)
+. ..|.+.|.|+| +.+.+.. . ..|.++..|+.+++
T Consensus 236 ~~~~~~~~~~l~i~K~R~~g~~g~~~~------~~f~~~~~~f~~~~ 276 (296)
T 1cr0_A 236 QQGDMPNLVLVRILKCRFTGDTGIAGY------MEYNKETGWLEPSS 276 (296)
T ss_dssp -------CEEEEEEEETTTCCCEEEEE------EEECTTTCCEEECC
T ss_pred cccCCCCeEEEEEEccccCCCCCceEE------EEEEcCccEEecCC
Confidence 43 35899999999 5888764 2 34778888887654
No 29
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.87 E-value=3.8e-21 Score=190.83 Aligned_cols=209 Identities=18% Similarity=0.199 Sum_probs=146.1
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHc
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERF 184 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 184 (352)
..+++||++.||++|+||+++|+++.|.|+||+|||||+.+++..... .+.+++|+.++++ ...+...+.++
T Consensus 260 ~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~------~G~~vi~~~~ee~--~~~l~~~~~~~ 331 (525)
T 1tf7_A 260 NVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA------NKERAILFAYEES--RAQLLRNAYSW 331 (525)
T ss_dssp CCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT------TTCCEEEEESSSC--HHHHHHHHHTT
T ss_pred cceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh------CCCCEEEEEEeCC--HHHHHHHHHHc
Confidence 457899999999999999999999999999999999999999887654 4557999999876 55666667777
Q ss_pred CCCcccccc--cEEEEec----CCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHH
Q 047388 185 GMDPGAVLD--NIIYARA----YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRL 258 (352)
Q Consensus 185 ~~~~~~~~~--~i~~~~~----~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L 258 (352)
+++.+++.. .+.+... .+..+.... +...+...+++++|+|+++.+... .. + ++ ..+.+..|
T Consensus 332 g~~~~~~~~~g~~~~~~~~p~~LS~g~~q~~---~~a~~l~~~p~llilDp~~~Ld~~-~~--~----~~--~~~~i~~l 399 (525)
T 1tf7_A 332 GMDFEEMERQNLLKIVCAYPESAGLEDHLQI---IKSEINDFKPARIAIDSLSALARG-VS--N----NA--FRQFVIGV 399 (525)
T ss_dssp SCCHHHHHHTTSEEECCCCGGGSCHHHHHHH---HHHHHHTTCCSEEEEECHHHHTSS-SC--H----HH--HHHHHHHH
T ss_pred CCCHHHHHhCCCEEEEEeccccCCHHHHHHH---HHHHHHhhCCCEEEEcChHHHHhh-CC--h----HH--HHHHHHHH
Confidence 776443221 2333222 233333222 222333468999999988777542 11 1 11 22333333
Q ss_pred HHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcc-hhhhhccceEEEEEeec---CCeEEEEEEeCCCCCcccccccc
Q 047388 259 TKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGG-HVLAHAVTIRLMFRKGK---GEQRVCKVFDAPNLPEAEAISFS 334 (352)
Q Consensus 259 ~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg-~~~~~~~~~~i~L~~~~---~~~R~~~i~Ks~~~~~~~~~~~~ 334 (352)
.+.+++.|++||+++|..... +. .++. ..+.+++|.++.|++.+ ...|+++++|+|..++....
T Consensus 400 l~~l~~~g~tvilvsh~~~~~-~~--------~~~~~~~l~~~~D~vi~L~~ge~~~~~~R~l~v~K~R~~~~~~~~--- 467 (525)
T 1tf7_A 400 TGYAKQEEITGLFTNTSDQFM-GA--------HSITDSHISTITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAI--- 467 (525)
T ss_dssp HHHHHHTTCEEEEEEECSSSS-CC--------CSSCSSCCTTTCSEEEEEEEEEETTEEEEEEEEEEESSSCCCCBC---
T ss_pred HHHHHhCCCEEEEEECccccc-Cc--------ccccCcccceeeeEEEEEEEEEeCCEEEEEEEEEECCCCCCCCCE---
Confidence 344456799999999987432 21 2222 56789999999998764 24799999999999984332
Q ss_pred eeeeeEEEeCCCcc
Q 047388 335 YHIILIKITPGGIA 348 (352)
Q Consensus 335 ~~~~~f~I~~~Gi~ 348 (352)
++|+|++.||+
T Consensus 468 ---~~f~i~~~Gi~ 478 (525)
T 1tf7_A 468 ---REFMISDKGPD 478 (525)
T ss_dssp ---EEEEECSSCEE
T ss_pred ---EEEEEcCCCEE
Confidence 67999999997
No 30
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.84 E-value=3.3e-20 Score=169.43 Aligned_cols=220 Identities=16% Similarity=0.198 Sum_probs=136.3
Q ss_pred cccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCC----CCCeEEEEeCCCCCChhhHHHHH
Q 047388 106 IKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRG----GNGKVAYIDTEGTFRPDRIVPIA 181 (352)
Q Consensus 106 ~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg----~~~~vl~i~~e~~~~~~rl~~~~ 181 (352)
..++||++.||+++ ||+++|++++|+|+||+|||||+++++..+.....+.| .+++++|++.|+. ...+...+
T Consensus 11 ~~i~tg~~~ld~~l-ggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~--~~~~~~r~ 87 (279)
T 1nlf_A 11 EAFAAAPPPLDYVL-PNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP--PTAIHHRL 87 (279)
T ss_dssp HHHHSCCCCCCEEE-TTEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC--HHHHHHHH
T ss_pred HHhcCCCCChheeE-CCccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC--HHHHHHHH
Confidence 46999999999999 69999999999999999999999999986653211111 1468999999986 44444444
Q ss_pred HHcCCCcc-----cccccEEEEecCC------HHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHH
Q 047388 182 ERFGMDPG-----AVLDNIIYARAYT------YEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQK 250 (352)
Q Consensus 182 ~~~~~~~~-----~~~~~i~~~~~~~------~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~ 250 (352)
..++.+.. .+++++.+....+ .... +..+...+. ++++||||++++++..+.. .. ..
T Consensus 88 ~~~g~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~---~~~i~~l~~--~~~livlDe~~~~~~~d~~-----~~--~~ 155 (279)
T 1nlf_A 88 HALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEW---FDGLKRAAE--GRRLMVLDTLRRFHIEEEN-----AS--GP 155 (279)
T ss_dssp HHHHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHHH---HHHHHHHHT--TCSEEEEECGGGGCCSCTT-----CH--HH
T ss_pred HHHHhhcChhhhhhccCceEEeecCCCCcccCCHHH---HHHHHHhcC--CCCEEEECCHHHhcCCCcC-----ch--HH
Confidence 55554321 2234555433211 1122 222333332 6899999999997643211 11 23
Q ss_pred HHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCC--CCCCcchhhhhccceEEEEEeec----------CC----e
Q 047388 251 LGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDP--KKPAGGHVLAHAVTIRLMFRKGK----------GE----Q 314 (352)
Q Consensus 251 l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~--~~~~gg~~~~~~~~~~i~L~~~~----------~~----~ 314 (352)
+.++++.|+.++++.|++||+++|..+... .+...+ ....|+..+...+.....+.+.. .+ .
T Consensus 156 ~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~--~~g~~~~~~~~~g~~~l~d~v~~~~~~~~~~~~~~~~~gi~~~~~~~~ 233 (279)
T 1nlf_A 156 MAQVIGRMEAIAADTGCSIVFLHHASKGAA--MMGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRRFF 233 (279)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEEC----------------------CTGGGCSCEEEEEECCHHHHHHTTCCTTSGGGE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCCccc--ccCCchhhhhccchhhhccchhhhhhccCCCHHHHHHhCCChhhcCcE
Confidence 458889999999999999999999986421 111001 11345666665555544455432 11 2
Q ss_pred EEEEEEeCCCCCcccccccceeeeeEEEeCCCccC
Q 047388 315 RVCKVFDAPNLPEAEAISFSYHIILIKITPGGIAD 349 (352)
Q Consensus 315 R~~~i~Ks~~~~~~~~~~~~~~~~~f~I~~~Gi~~ 349 (352)
..+++.|++..|++... .|.+.++|+..
T Consensus 234 ~~~~v~K~~~~~~~~~~-------~~~~~~~G~l~ 261 (279)
T 1nlf_A 234 VRFGVSKANYGAPFADR-------WFRRHDGGVLK 261 (279)
T ss_dssp EEEEEEECSSSSCCCCE-------EEEECGGGCEE
T ss_pred EEeeeccccCCCCCCce-------EEEEcCCeeEe
Confidence 23779999999987654 38888888754
No 31
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=99.82 E-value=5.4e-19 Score=158.54 Aligned_cols=208 Identities=13% Similarity=-0.004 Sum_probs=132.6
Q ss_pred ccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCC
Q 047388 107 KITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGM 186 (352)
Q Consensus 107 ~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~ 186 (352)
.++||++.||++|+||+++|.+++|.|.||+|||+|++|++.+.+. .+.+++|++.+.+ +..+...++.+|+
T Consensus 2 ~i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~------~Ge~~~~~~~~e~--~~~l~~~~~~~G~ 73 (260)
T 3bs4_A 2 SLSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLK------SDNLVGMFSISYP--LQLIIRILSRFGV 73 (260)
T ss_dssp CBCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHH------TTCEEEEEECSSC--HHHHHHHHHHTTC
T ss_pred cCccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHH------CCCcEEEEEEeCC--HHHHHHHHHHcCC
Confidence 4899999999999999999999999999999999999999998887 7899999999987 8889999999999
Q ss_pred Ccccccc--cEEEEec--------------------CCHHHHHHHHHHHHHH------hhc-CC-ceE-EEEcccccchh
Q 047388 187 DPGAVLD--NIIYARA--------------------YTYEHQYNLLLGLAAK------MSE-EP-FRL-LIVDSVIALFR 235 (352)
Q Consensus 187 ~~~~~~~--~i~~~~~--------------------~~~~~~~~~l~~l~~~------l~~-~~-~~l-vvIDsl~~l~~ 235 (352)
+.+.+.+ ++.+.+. .+..+....+..+.+. +.. .+ .++ ++||++..+..
T Consensus 74 dl~~~~~~g~l~i~d~~~~~~~~~~~~~~v~~~~~e~d~~~l~~~i~~iv~~~~~~~~i~~~~~~~rvv~vidsldsl~~ 153 (260)
T 3bs4_A 74 DVIKYLENHRLAIVDTFGSFHGIKATMPGVWYLEGMLSSETLPIKYAKAVEDHKKVWMDLNLFEGRELYGFAISMSGYLE 153 (260)
T ss_dssp CHHHHHHTTSEEEECHHHHHHTC---CTTEECCCSCCCTTTHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEEETGGGGGG
T ss_pred CHHHHhhCCcEEEEEcccccccccccccceecccccCCHHHHHHHHHHHHHhhccccchhhccCCceEEEEEeecchHHH
Confidence 9876543 4555532 2233332223333332 122 23 453 46777766643
Q ss_pred cccCCCcchHHHHHHHHHHHHH--HHHHHHH-hCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEee--
Q 047388 236 VDFTGRGELADRQQKLGQMLSR--LTKISEE-FNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKG-- 310 (352)
Q Consensus 236 ~~~~~~g~~~~r~~~l~~i~~~--L~~la~~-~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~-- 310 (352)
. +. ....+ +.+.+++.. ...+..+ .+++.+++.+ .. . . ......+.+.+|.+|.|+..
T Consensus 154 ~-~~---~~~~~-~~~~~ll~~~~~~~~~~~~~~~ttil~~~-~~-~-~---------~~~~~~l~~laD~VI~lr~~e~ 216 (260)
T 3bs4_A 154 V-FT---PEETL-RYLETSAEVRYGHPAYKKYPRGTNFWLWE-GV-K-D---------KRVLLSVYRRADYVLKTRSSLG 216 (260)
T ss_dssp T-SC---HHHHH-HHHHHHHHHHHHCHHHHSSCCCEEEEEEE-SC-S-C---------HHHHHHHHHHCSEEEEEEEEEE
T ss_pred H-hC---hhhHH-HHHHHHHHhhhhHHHHhccCCcEEEEEEC-CC-c-c---------cccccceEEEeeEEEEEEEEec
Confidence 2 11 11111 111222222 1113333 6777777655 21 1 1 11234566789999999864
Q ss_pred cC-CeEEEEEEeCCCCCcccccccceeeeeEEEeCC
Q 047388 311 KG-EQRVCKVFDAPNLPEAEAISFSYHIILIKITPG 345 (352)
Q Consensus 311 ~~-~~R~~~i~Ks~~~~~~~~~~~~~~~~~f~I~~~ 345 (352)
++ ..|.+.|.|+|....... +++|.|+..
T Consensus 217 ~g~~rR~L~V~K~Rg~~~~~~------~re~~i~~~ 246 (260)
T 3bs4_A 217 ENGIKRELLVIKTPKPIEELV------RFEYEFKGN 246 (260)
T ss_dssp TTEEEEEEEEEECCC-----C------EEEEEEETT
T ss_pred CCceEEEEEEEECCCCCcCCc------eEEEEEecC
Confidence 23 368999999998765433 245777654
No 32
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=99.74 E-value=1.2e-18 Score=135.56 Aligned_cols=112 Identities=42% Similarity=0.568 Sum_probs=68.3
Q ss_pred HhhhhhhhhcccccccchhhhcHHHHHhCCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHHHHh
Q 047388 9 EQSQLQLVEREDIDDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIV 88 (352)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 88 (352)
.+.++.+..++.+|++...|.++..|+.+|+++.++++|+++||.|+++++.+++++|.+++|+++..+.+++..+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~I~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl~ 82 (114)
T 1b22_A 3 MQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLV 82 (114)
T ss_dssp -------------CCSCSSCCCHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHHS
T ss_pred hhHHHHHhchHHhhccccCCccHHHHHhcCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHHc
Confidence 45778888888899888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchhhhHHhhhcccccccCChhhHHhhc
Q 047388 89 NFGYITGSDALLRRKAVIKITTGSQALDELLG 120 (352)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~ 120 (352)
+.+|.+|.++++.+.+..+|+||+..||.+|+
T Consensus 83 ~~gF~ta~e~~~~r~~~~~itTGs~~lD~lLg 114 (114)
T 1b22_A 83 PMGFTTATEFHQRRSEIIQITTGSKELDKLLQ 114 (114)
T ss_dssp CCC-----------------------------
T ss_pred ccCCCcHHHHHHHhcCCCeeccCcHHHHhhhC
Confidence 99999999999999999999999999999983
No 33
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.73 E-value=1.7e-16 Score=157.31 Aligned_cols=214 Identities=18% Similarity=0.218 Sum_probs=145.5
Q ss_pred cccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH
Q 047388 104 AVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER 183 (352)
Q Consensus 104 ~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 183 (352)
...+++||++.||.+..||+++|+++.|.|+||||||||+.+++.+.+.+ .+.+++|++++.. ...+...+++
T Consensus 17 ~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-----~~~g~i~v~g~~~--~~~~~~~~~~ 89 (525)
T 1tf7_A 17 AIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-----FDEPGVFVTFEET--PQDIIKNARS 89 (525)
T ss_dssp SCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSSC--HHHHHHHHGG
T ss_pred ccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEEeCC--HHHHHHHHHH
Confidence 45689999999999998899999999999999999999999976554443 2456899998874 5566667778
Q ss_pred cCCCccccc--ccEEEEecC---------CHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHH
Q 047388 184 FGMDPGAVL--DNIIYARAY---------TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLG 252 (352)
Q Consensus 184 ~~~~~~~~~--~~i~~~~~~---------~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~ 252 (352)
+|+.++... .++...... ....+.+.+.++...+...++++|++|+++++++.. + -+...| .
T Consensus 90 ~g~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~--~-lD~~~~----~ 162 (525)
T 1tf7_A 90 FGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY--D-ASSVVR----R 162 (525)
T ss_dssp GTCCHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT--C-CHHHHH----H
T ss_pred cCCChHHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc--C-CHHHHH----H
Confidence 888775432 234443321 122333445555566666689999999999876531 0 011222 2
Q ss_pred HHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchh-hhhccceEEEEEeec--C-CeEEEEEEeCCCCCcc
Q 047388 253 QMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHV-LAHAVTIRLMFRKGK--G-EQRVCKVFDAPNLPEA 328 (352)
Q Consensus 253 ~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~-~~~~~~~~i~L~~~~--~-~~R~~~i~Ks~~~~~~ 328 (352)
.+...++.+++ .|+|||+++|....... ..... ..+.+|.++.|+... | ..|.+.+.|.|..+..
T Consensus 163 ~l~~ll~~l~~-~g~tvl~itH~~~~~~~----------~~~~~i~~~laD~vi~L~~~~~~G~~~r~l~~~k~r~~~~~ 231 (525)
T 1tf7_A 163 ELFRLVARLKQ-IGATTVMTTERIEEYGP----------IARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHM 231 (525)
T ss_dssp HHHHHHHHHHH-HTCEEEEEEECSSSSSC----------SSTTSCHHHHCSEEEEEEEECSTTCCEEEEEEEEETTSCCC
T ss_pred HHHHHHHHHHH-CCCEEEEEecCCCCccc----------cccccceeeeeeEEEEEEEEccCCceeEEEEEEECCCCCCC
Confidence 56666666655 69999999998753211 01112 356699999998742 2 4688899998866543
Q ss_pred cccccceeeeeEEEeCCCcc
Q 047388 329 EAISFSYHIILIKITPGGIA 348 (352)
Q Consensus 329 ~~~~~~~~~~~f~I~~~Gi~ 348 (352)
.. +.+|.|++.|+.
T Consensus 232 ~~------~~~~~i~~~gi~ 245 (525)
T 1tf7_A 232 KG------EYPFTITDHGIN 245 (525)
T ss_dssp CS------EEEEEEETTEEE
T ss_pred Cc------eEEEEEcCCCEE
Confidence 22 245888888875
No 34
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.52 E-value=4.7e-15 Score=135.97 Aligned_cols=130 Identities=16% Similarity=0.171 Sum_probs=88.7
Q ss_pred ccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeC--CCCCChhhHHHHHHHc
Q 047388 107 KITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDT--EGTFRPDRIVPIAERF 184 (352)
Q Consensus 107 ~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~--e~~~~~~rl~~~~~~~ 184 (352)
.++||++.||++| ||+++|.+++|+||||+|||+|+++++.. .+.+|+|++. +..++
T Consensus 105 ~i~TGi~~LD~lL-GGi~~gsviLI~GpPGsGKTtLAlqlA~~---------~G~~VlyIs~~~eE~v~----------- 163 (331)
T 2vhj_A 105 ELVGCSPVVAEFG-GHRYASGMVIVTGKGNSGKTPLVHALGEA---------LGGKDKYATVRFGEPLS----------- 163 (331)
T ss_dssp TCCSBCCEEEEET-TEEEESEEEEEECSCSSSHHHHHHHHHHH---------HHTTSCCEEEEBSCSST-----------
T ss_pred ccccCcHHHHHHh-CCCCCCcEEEEEcCCCCCHHHHHHHHHHh---------CCCCEEEEEecchhhhh-----------
Confidence 4789999999999 99999999999999999999999999876 2457899998 32211
Q ss_pred CCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHH
Q 047388 185 GMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEE 264 (352)
Q Consensus 185 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~ 264 (352)
. .. .+.+. .+..+.+.+.+.+ +||||++..+...... .+..+...+.+.+++..|..++++
T Consensus 164 ---~---~~-------~~le~---~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~-~s~~G~v~~~lrqlL~~L~~~~k~ 224 (331)
T 2vhj_A 164 ---G---YN-------TDFNV---FVDDIARAMLQHR--VIVIDSLKNVIGAAGG-NTTSGGISRGAFDLLSDIGAMAAS 224 (331)
T ss_dssp ---T---CB-------CCHHH---HHHHHHHHHHHCS--EEEEECCTTTC------------CCHHHHHHHHHHHHHHHH
T ss_pred ---h---hh-------cCHHH---HHHHHHHHHhhCC--EEEEeccccccccccc-ccccchHHHHHHHHHHHHHHHHhh
Confidence 0 00 22222 2333444444444 9999999998653221 000111123467889999999999
Q ss_pred hCcEEEEEcccc
Q 047388 265 FNVAVYMTNQVI 276 (352)
Q Consensus 265 ~~~~viv~~h~~ 276 (352)
.++++|++++..
T Consensus 225 ~gvtVIlttnp~ 236 (331)
T 2vhj_A 225 RGCVVIASLNPT 236 (331)
T ss_dssp HTCEEEEECCCS
T ss_pred CCCEEEEEeCCc
Confidence 999999886643
No 35
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.96 E-value=5.4e-10 Score=101.22 Aligned_cols=150 Identities=13% Similarity=0.191 Sum_probs=84.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCC-ChhhHHHHHHHcCCCcc---------cc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTF-RPDRIVPIAERFGMDPG---------AV 191 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~-~~~rl~~~~~~~~~~~~---------~~ 191 (352)
-+++|+++.|.||+|||||||+..++ ...++ ..+.++++..... .......+.+..++-++ .+
T Consensus 30 ~i~~Ge~~~iiGpnGsGKSTLl~~l~--Gl~~p-----~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv 102 (275)
T 3gfo_A 30 NIKRGEVTAILGGNGVGKSTLFQNFN--GILKP-----SSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASV 102 (275)
T ss_dssp EEETTSEEEEECCTTSSHHHHHHHHT--TSSCC-----SEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHH--cCCCC-----CCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcH
Confidence 57899999999999999999999554 33332 3345666654321 22223333444444332 12
Q ss_pred cccEEEEe---cCCHHHHHHHHHHHH---------------------------HHhhcCCceEEEEcccccchhcccCCC
Q 047388 192 LDNIIYAR---AYTYEHQYNLLLGLA---------------------------AKMSEEPFRLLIVDSVIALFRVDFTGR 241 (352)
Q Consensus 192 ~~~i~~~~---~~~~~~~~~~l~~l~---------------------------~~l~~~~~~lvvIDsl~~l~~~~~~~~ 241 (352)
.+|+.+.. .....+..+.+.++. +.+ -.+|+++++|+.++-+.+
T Consensus 103 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL-~~~P~lLlLDEPts~LD~----- 176 (275)
T 3gfo_A 103 YQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL-VMEPKVLILDEPTAGLDP----- 176 (275)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH-TTCCSEEEEECTTTTCCH-----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHH-HcCCCEEEEECccccCCH-----
Confidence 22322110 011111111111111 111 137999999998876432
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEe
Q 047388 242 GELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309 (352)
Q Consensus 242 g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~ 309 (352)
..+ ..+.+.|++++++.|+|||+++|-... +...+|.++.|..
T Consensus 177 ---~~~----~~i~~~l~~l~~~~g~tvi~vtHdl~~------------------~~~~~drv~~l~~ 219 (275)
T 3gfo_A 177 ---MGV----SEIMKLLVEMQKELGITIIIATHDIDI------------------VPLYCDNVFVMKE 219 (275)
T ss_dssp ---HHH----HHHHHHHHHHHHHHCCEEEEEESCCSS------------------GGGGCSEEEEEET
T ss_pred ---HHH----HHHHHHHHHHHhhCCCEEEEEecCHHH------------------HHHhCCEEEEEEC
Confidence 222 367788888875559999999996541 3456777777764
No 36
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.92 E-value=6.6e-09 Score=97.38 Aligned_cols=136 Identities=15% Similarity=0.218 Sum_probs=78.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC--CChhhHHHHHHHcCCCcc--------cc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT--FRPDRIVPIAERFGMDPG--------AV 191 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~--~~~~rl~~~~~~~~~~~~--------~~ 191 (352)
-+++|+++.|.||||||||||+..++ .+.++ ..+.++++...- .+...+....+.+++-++ .+
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~--GL~~p-----~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV 122 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVN--LLERP-----TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTV 122 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHH--TSSCC-----SEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCH
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHh--cCCCC-----CceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCH
Confidence 58899999999999999999998554 33332 234556655432 223333333334443222 23
Q ss_pred cccEEEEe---cCCHHHH----HHHHHHH-----------------------HHHhhcCCceEEEEcccccchhcccCCC
Q 047388 192 LDNIIYAR---AYTYEHQ----YNLLLGL-----------------------AAKMSEEPFRLLIVDSVIALFRVDFTGR 241 (352)
Q Consensus 192 ~~~i~~~~---~~~~~~~----~~~l~~l-----------------------~~~l~~~~~~lvvIDsl~~l~~~~~~~~ 241 (352)
.+|+.+.. .....+. .+++..+ .+.+ -.+|+++++|+.++.+.+
T Consensus 123 ~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL-~~~P~lLLlDEPTs~LD~----- 196 (366)
T 3tui_C 123 FGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL-ASNPKVLLCDQATSALDP----- 196 (366)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHT-TTCCSEEEEESTTTTSCH-----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH-hcCCCEEEEECCCccCCH-----
Confidence 33332210 0111111 1111111 0111 137999999998877532
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 242 GELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 242 g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
..+ ..+++.|++++++.|+|||+++|-..
T Consensus 197 ---~~~----~~i~~lL~~l~~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 197 ---ATT----RSILELLKDINRRLGLTILLITHEMD 225 (366)
T ss_dssp ---HHH----HHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred ---HHH----HHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 122 37888899999889999999999653
No 37
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.91 E-value=1.3e-08 Score=89.98 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=42.9
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhh
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAH 299 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~ 299 (352)
.+|+++++|+.++-+.. ..+ ..+.+.|++++++.|.+||+++|-.. ...
T Consensus 162 ~~p~llllDEPts~LD~--------~~~----~~i~~~l~~l~~~~g~tvi~vtHd~~-------------------~~~ 210 (235)
T 3tif_A 162 NNPPIILADQPTWALDS--------KTG----EKIMQLLKKLNEEDGKTVVVVTHDIN-------------------VAR 210 (235)
T ss_dssp TCCSEEEEESTTTTSCH--------HHH----HHHHHHHHHHHHHHCCEEEEECSCHH-------------------HHT
T ss_pred cCCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHHcCCEEEEEcCCHH-------------------HHH
Confidence 37999999998877532 222 37788888888888999999999543 123
Q ss_pred ccceEEEEEe
Q 047388 300 AVTIRLMFRK 309 (352)
Q Consensus 300 ~~~~~i~L~~ 309 (352)
.+|.++.|..
T Consensus 211 ~~d~i~~l~~ 220 (235)
T 3tif_A 211 FGERIIYLKD 220 (235)
T ss_dssp TSSEEEEEET
T ss_pred hCCEEEEEEC
Confidence 5677777764
No 38
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.87 E-value=9.8e-09 Score=92.11 Aligned_cols=59 Identities=5% Similarity=0.128 Sum_probs=41.8
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhh
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAH 299 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~ 299 (352)
.+|+++++|+.++-+.. ..+ ..+.+.|++++++ |.+||+++|-... +..
T Consensus 170 ~~p~lllLDEPts~LD~--------~~~----~~l~~~l~~l~~~-g~tvi~vtHd~~~------------------~~~ 218 (257)
T 1g6h_A 170 TNPKMIVMDEPIAGVAP--------GLA----HDIFNHVLELKAK-GITFLIIEHRLDI------------------VLN 218 (257)
T ss_dssp TCCSEEEEESTTTTCCH--------HHH----HHHHHHHHHHHHT-TCEEEEECSCCST------------------TGG
T ss_pred cCCCEEEEeCCccCCCH--------HHH----HHHHHHHHHHHHC-CCEEEEEecCHHH------------------HHH
Confidence 37999999998877532 222 3677778888765 9999999996531 245
Q ss_pred ccceEEEEEe
Q 047388 300 AVTIRLMFRK 309 (352)
Q Consensus 300 ~~~~~i~L~~ 309 (352)
.+|.++.|..
T Consensus 219 ~~d~v~~l~~ 228 (257)
T 1g6h_A 219 YIDHLYVMFN 228 (257)
T ss_dssp GCSEEEEEET
T ss_pred hCCEEEEEEC
Confidence 6777777764
No 39
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.86 E-value=5e-09 Score=91.74 Aligned_cols=143 Identities=13% Similarity=0.015 Sum_probs=89.4
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCH
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTY 203 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 203 (352)
.+|.++.++|++|+||||++++++.+... .+.+|+++..+.. ..-..+++.++|+.. ..+.+ ...
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~------~g~kVli~~~~~d--~r~~~~i~srlG~~~----~~~~~---~~~ 74 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY------ADVKYLVFKPKID--TRSIRNIQSRTGTSL----PSVEV---ESA 74 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH------TTCCEEEEEECCC--GGGCSSCCCCCCCSS----CCEEE---SST
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh------cCCEEEEEEeccC--chHHHHHHHhcCCCc----ccccc---CCH
Confidence 56899999999999999999999988765 5778999965532 111113344455433 22222 222
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCc
Q 047388 204 EHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGV 283 (352)
Q Consensus 204 ~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~ 283 (352)
.+ ++..+...+...++++|+||+++.+.. .++..+..++.. +++||++.|...- .+..
T Consensus 75 ~~---i~~~i~~~~~~~~~dvViIDEaQ~l~~-----------------~~ve~l~~L~~~-gi~Vil~Gl~~df-~~~~ 132 (223)
T 2b8t_A 75 PE---ILNYIMSNSFNDETKVIGIDEVQFFDD-----------------RICEVANILAEN-GFVVIISGLDKNF-KGEP 132 (223)
T ss_dssp HH---HHHHHHSTTSCTTCCEEEECSGGGSCT-----------------HHHHHHHHHHHT-TCEEEEECCSBCT-TSSB
T ss_pred HH---HHHHHHHHhhCCCCCEEEEecCccCcH-----------------HHHHHHHHHHhC-CCeEEEEeccccc-cCCc
Confidence 22 333333334445689999999987521 233445666664 9999999997752 2332
Q ss_pred ccCCCCCCCcchhhhhccceEEEEEee
Q 047388 284 FISDPKKPAGGHVLAHAVTIRLMFRKG 310 (352)
Q Consensus 284 ~~~~~~~~~gg~~~~~~~~~~i~L~~~ 310 (352)
|. +...+...+|.+..|+..
T Consensus 133 F~-------~~~~Ll~lAD~V~el~~i 152 (223)
T 2b8t_A 133 FG-------PIAKLFTYADKITKLTAI 152 (223)
T ss_dssp CT-------THHHHHHHCSEEEECCEE
T ss_pred CC-------CcHHHHHHhheEeeccee
Confidence 31 124556688988887654
No 40
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.84 E-value=7.4e-09 Score=93.33 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=42.9
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+|+++++|+.++-+.. ..+ ..+.+.|++++++.+++||+++|-.. .+...
T Consensus 165 ~p~lLllDEPts~LD~--------~~~----~~i~~~l~~l~~~~~~tvi~vtHdl~------------------~~~~~ 214 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDL--------YHQ----QHTLRLLRQLTRQEPLAVCCVLHDLN------------------LAALY 214 (266)
T ss_dssp CCEEEEECCCCSSCCH--------HHH----HHHHHHHHHHHHHSSEEEEEECSCHH------------------HHHHH
T ss_pred CCCEEEEeCccccCCH--------HHH----HHHHHHHHHHHHcCCCEEEEEEcCHH------------------HHHHh
Confidence 7999999998876432 222 37788888888888899999999653 13456
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 215 ~d~v~vl~~ 223 (266)
T 4g1u_C 215 ADRIMLLAQ 223 (266)
T ss_dssp CSEEEEEET
T ss_pred CCEEEEEEC
Confidence 677777764
No 41
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.81 E-value=2.8e-08 Score=87.30 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=32.8
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.+|+++++|+.++.+.. ..+ ..+.+.|++++++ |.+||+++|-.
T Consensus 157 ~~p~lllLDEPt~~LD~--------~~~----~~~~~~l~~l~~~-g~tvi~vtHd~ 200 (224)
T 2pcj_A 157 NEPILLFADEPTGNLDS--------ANT----KRVMDIFLKINEG-GTSIVMVTHER 200 (224)
T ss_dssp TCCSEEEEESTTTTCCH--------HHH----HHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred cCCCEEEEeCCCCCCCH--------HHH----HHHHHHHHHHHHC-CCEEEEEcCCH
Confidence 37999999998876432 222 3677778888776 99999999954
No 42
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.80 E-value=1.1e-08 Score=92.14 Aligned_cols=149 Identities=18% Similarity=0.225 Sum_probs=82.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCC-ChhhHHHHHHHcCCCcc--------ccc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTF-RPDRIVPIAERFGMDPG--------AVL 192 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~-~~~rl~~~~~~~~~~~~--------~~~ 192 (352)
-+++|+++.|.||+|||||||+..++ ...++ ..+.++++..... .........+.+++-++ .+.
T Consensus 46 ~i~~Gei~~liG~NGsGKSTLlk~l~--Gl~~p-----~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~ 118 (263)
T 2olj_A 46 HIREGEVVVVIGPSGSGKSTFLRCLN--LLEDF-----DEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVL 118 (263)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHT--TSSCC-----SEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHH
T ss_pred EEcCCCEEEEEcCCCCcHHHHHHHHH--cCCCC-----CCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHH
Confidence 57899999999999999999999654 33332 2344555543210 11112222333433221 233
Q ss_pred ccEEEEe----cCCHHH----HHHHHHHH-----------------------HHHhhcCCceEEEEcccccchhcccCCC
Q 047388 193 DNIIYAR----AYTYEH----QYNLLLGL-----------------------AAKMSEEPFRLLIVDSVIALFRVDFTGR 241 (352)
Q Consensus 193 ~~i~~~~----~~~~~~----~~~~l~~l-----------------------~~~l~~~~~~lvvIDsl~~l~~~~~~~~ 241 (352)
+|+.+.. ...... ..++++.+ .+.+ -.+|+++++|+.++-+..
T Consensus 119 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL-~~~p~lllLDEPts~LD~----- 192 (263)
T 2olj_A 119 NNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARAL-AMEPKIMLFDEPTSALDP----- 192 (263)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH-TTCCSEEEEESTTTTSCH-----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH-HCCCCEEEEeCCcccCCH-----
Confidence 3432210 011111 11111111 0111 137999999998877532
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEe
Q 047388 242 GELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRK 309 (352)
Q Consensus 242 g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~ 309 (352)
..+ ..+.+.|++++++ +.+||+++|-.. .+...+|.++.|..
T Consensus 193 ---~~~----~~~~~~l~~l~~~-g~tvi~vtHd~~------------------~~~~~~d~v~~l~~ 234 (263)
T 2olj_A 193 ---EMV----GEVLSVMKQLANE-GMTMVVVTHEMG------------------FAREVGDRVLFMDG 234 (263)
T ss_dssp ---HHH----HHHHHHHHHHHHT-TCEEEEECSCHH------------------HHHHHCSEEEEEET
T ss_pred ---HHH----HHHHHHHHHHHhC-CCEEEEEcCCHH------------------HHHHhCCEEEEEEC
Confidence 222 3677778888776 999999999643 24556787777764
No 43
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.77 E-value=4.5e-09 Score=99.08 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=34.0
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
+|+++++|+.++-+.. ..| .++...|+++.++.|+|+|+++|-.
T Consensus 151 ~P~lLLLDEPts~LD~--------~~~----~~l~~~l~~l~~~~g~tii~vTHd~ 194 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDA--------ALR----VQMRIEISRLHKRLGRTMIYVTHDQ 194 (381)
T ss_dssp CCSEEEEESTTTTSCH--------HHH----HHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred CCCEEEEECCCcCCCH--------HHH----HHHHHHHHHHHHhCCCEEEEEECCH
Confidence 7899999998776431 222 3777888889889999999999943
No 44
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.75 E-value=1.6e-09 Score=101.41 Aligned_cols=45 Identities=9% Similarity=0.050 Sum_probs=33.3
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.+|+++++|+.++-+.. ..| .++...|+++.++.|+|+|+++|-.
T Consensus 155 ~~P~lLLLDEPts~LD~--------~~r----~~l~~~l~~~~~~~g~tvi~vTHd~ 199 (359)
T 3fvq_A 155 PDPELILLDEPFSALDE--------QLR----RQIREDMIAALRANGKSAVFVSHDR 199 (359)
T ss_dssp TCCSEEEEESTTTTSCH--------HHH----HHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred cCCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 37999999998776431 222 2566678888888899999999943
No 45
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.72 E-value=1.4e-08 Score=95.36 Aligned_cols=45 Identities=11% Similarity=0.205 Sum_probs=34.2
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.+|+++++|+.++-+.. ..| .++...|+++.++.|+++|+++|-.
T Consensus 150 ~~P~lLLLDEP~s~LD~--------~~r----~~l~~~l~~l~~~~g~tvi~vTHd~ 194 (362)
T 2it1_A 150 KEPEVLLLDEPLSNLDA--------LLR----LEVRAELKRLQKELGITTVYVTHDQ 194 (362)
T ss_dssp TCCSEEEEESGGGGSCH--------HHH----HHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred cCCCEEEEECccccCCH--------HHH----HHHHHHHHHHHHhCCCEEEEECCCH
Confidence 37999999998776432 222 3677788888888899999999943
No 46
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.71 E-value=4.9e-08 Score=87.39 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=23.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
-+++|+++.|.||+|||||||+..++
T Consensus 37 ~i~~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 37 EIEEGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999999999654
No 47
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.71 E-value=8.6e-08 Score=85.69 Aligned_cols=135 Identities=16% Similarity=0.177 Sum_probs=72.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCC--CCeEEEEeCCCCCC-hhhHHHH------------------
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG--NGKVAYIDTEGTFR-PDRIVPI------------------ 180 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~--~~~vl~i~~e~~~~-~~rl~~~------------------ 180 (352)
-+++|+++.|.||+|||||||+..++ ...++..|.- ...+.|+..+..+. ...+.+.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~--Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 104 (253)
T 2nq2_C 27 DLNKGDILAVLGQNGCGKSTLLDLLL--GIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSH 104 (253)
T ss_dssp EEETTCEEEEECCSSSSHHHHHHHHT--TSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHH
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHH
Confidence 47899999999999999999999654 3343333221 23455654432221 1112111
Q ss_pred --------HHHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHH
Q 047388 181 --------AERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLG 252 (352)
Q Consensus 181 --------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~ 252 (352)
++.+++.. ..++ .....+.. +.+.+.-+...+ .+|+++++|+.++.+.. ..+ .
T Consensus 105 ~~~~~~~~l~~~~l~~--~~~~--~~~~LSgG-q~qrv~lAraL~--~~p~lllLDEPts~LD~--------~~~----~ 165 (253)
T 2nq2_C 105 DYQVAMQALDYLNLTH--LAKR--EFTSLSGG-QRQLILIARAIA--SECKLILLDEPTSALDL--------ANQ----D 165 (253)
T ss_dssp HHHHHHHHHHHTTCGG--GTTS--BGGGSCHH-HHHHHHHHHHHH--TTCSEEEESSSSTTSCH--------HHH----H
T ss_pred HHHHHHHHHHHcCChH--HhcC--ChhhCCHH-HHHHHHHHHHHH--cCCCEEEEeCCcccCCH--------HHH----H
Confidence 11122110 0000 00011111 111111111122 37999999998876532 222 3
Q ss_pred HHHHHHHHHHHHhCcEEEEEccccc
Q 047388 253 QMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 253 ~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.+.+.|++++++.+.+||+++|-..
T Consensus 166 ~l~~~l~~l~~~~g~tvi~vtHd~~ 190 (253)
T 2nq2_C 166 IVLSLLIDLAQSQNMTVVFTTHQPN 190 (253)
T ss_dssp HHHHHHHHHHHTSCCEEEEEESCHH
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH
Confidence 6777788887766999999999643
No 48
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.71 E-value=3.4e-08 Score=88.77 Aligned_cols=58 Identities=12% Similarity=0.234 Sum_probs=41.5
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHA 300 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~ 300 (352)
+|+++++|+.++-+.. ..+ ..+.+.|++++++ |.+||+++|-.. .+...
T Consensus 171 ~p~lllLDEPts~LD~--------~~~----~~~~~~l~~l~~~-g~tvi~vtHd~~------------------~~~~~ 219 (262)
T 1b0u_A 171 EPDVLLFDEPTSALDP--------ELV----GEVLRIMQQLAEE-GKTMVVVTHEMG------------------FARHV 219 (262)
T ss_dssp CCSEEEEESTTTTSCH--------HHH----HHHHHHHHHHHHT-TCCEEEECSCHH------------------HHHHH
T ss_pred CCCEEEEeCCCccCCH--------HHH----HHHHHHHHHHHhC-CCEEEEEeCCHH------------------HHHHh
Confidence 7999999998876432 222 3677778888766 999999999643 13556
Q ss_pred cceEEEEEe
Q 047388 301 VTIRLMFRK 309 (352)
Q Consensus 301 ~~~~i~L~~ 309 (352)
+|.++.|..
T Consensus 220 ~d~v~~l~~ 228 (262)
T 1b0u_A 220 SSHVIFLHQ 228 (262)
T ss_dssp CSEEEEEET
T ss_pred CCEEEEEEC
Confidence 777777764
No 49
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.70 E-value=1.6e-08 Score=95.31 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=33.3
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQV 275 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~ 275 (352)
+|+++++|+.++-+.. ..| .++...|+++.++.|+++|+++|-
T Consensus 159 ~P~lLLLDEP~s~LD~--------~~r----~~l~~~l~~l~~~~g~tvi~vTHd 201 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDA--------KLR----VAMRAEIKKLQQKLKVTTIYVTHD 201 (372)
T ss_dssp CCSEEEEESTTTTSCH--------HHH----HHHHHHHHHHHHHHTCEEEEEESC
T ss_pred CCCEEEEcCCCccCCH--------HHH----HHHHHHHHHHHHhCCCEEEEEeCC
Confidence 7999999998776431 222 267778888888889999999994
No 50
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.70 E-value=1.4e-08 Score=94.99 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=34.1
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.+|+++++|+.++-+.. ..| .++...|+++.++.++++|+++|-.
T Consensus 162 ~~P~lLLLDEP~s~LD~--------~~r----~~l~~~l~~l~~~~g~tvi~vTHd~ 206 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDT--------QIR----RELRTFVRQVHDEMGVTSVFVTHDQ 206 (355)
T ss_dssp TCCSEEEEESTTCCSSH--------HHH----HHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred cCCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEECCCH
Confidence 37999999998776421 222 3677788888888899999999943
No 51
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.69 E-value=8e-09 Score=96.87 Aligned_cols=45 Identities=11% Similarity=0.191 Sum_probs=34.1
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.+|+++++|+.++-+.. ..| .++...|+++.++.|+|+|+++|-.
T Consensus 150 ~~P~lLLLDEP~s~LD~--------~~r----~~l~~~l~~l~~~~g~tvi~vTHd~ 194 (359)
T 2yyz_A 150 KQPKVLLFDEPLSNLDA--------NLR----MIMRAEIKHLQQELGITSVYVTHDQ 194 (359)
T ss_dssp TCCSEEEEESTTTTSCH--------HHH----HHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred cCCCEEEEECCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 37999999998776431 222 2677788888888899999999953
No 52
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.68 E-value=2.5e-08 Score=88.49 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=41.5
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhh
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAH 299 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~ 299 (352)
.+|+++++|+.++-+.. ..+ ..+.+.|+++++ .|.+||+++|-.. .+..
T Consensus 156 ~~p~lllLDEPts~LD~--------~~~----~~l~~~l~~~~~-~g~tvi~vtHd~~------------------~~~~ 204 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAP--------ILV----SEVFEVIQKINQ-EGTTILLVEQNAL------------------GALK 204 (240)
T ss_dssp TCCSEEEEECTTTTCCH--------HHH----HHHHHHHHHHHH-TTCCEEEEESCHH------------------HHHH
T ss_pred cCCCEEEEcCCcccCCH--------HHH----HHHHHHHHHHHH-CCCEEEEEecCHH------------------HHHH
Confidence 37999999998877532 222 267777788765 5899999999643 1355
Q ss_pred ccceEEEEEe
Q 047388 300 AVTIRLMFRK 309 (352)
Q Consensus 300 ~~~~~i~L~~ 309 (352)
.+|.++.|..
T Consensus 205 ~~d~v~~l~~ 214 (240)
T 1ji0_A 205 VAHYGYVLET 214 (240)
T ss_dssp HCSEEEEEET
T ss_pred hCCEEEEEEC
Confidence 6787777764
No 53
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.65 E-value=6.5e-08 Score=90.30 Aligned_cols=45 Identities=9% Similarity=0.141 Sum_probs=34.0
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.+|+++++|+.++-+.. ..| .++...|+++.++.|+++|+++|-.
T Consensus 144 ~~P~lLLLDEP~s~LD~--------~~~----~~l~~~l~~l~~~~g~tii~vTHd~ 188 (348)
T 3d31_A 144 TNPKILLLDEPLSALDP--------RTQ----ENAREMLSVLHKKNKLTVLHITHDQ 188 (348)
T ss_dssp SCCSEEEEESSSTTSCH--------HHH----HHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred cCCCEEEEECccccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 37999999998776432 222 3677788888888899999999953
No 54
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.64 E-value=2e-08 Score=94.65 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=33.6
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQV 275 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~ 275 (352)
.+|+++++|+.++-+.. ..| .++...|+++.++.++++|+++|-
T Consensus 156 ~~P~lLLLDEP~s~LD~--------~~r----~~l~~~l~~l~~~~g~tvi~vTHd 199 (372)
T 1g29_1 156 RKPQVFLMDEPLSNLDA--------KLR----VRMRAELKKLQRQLGVTTIYVTHD 199 (372)
T ss_dssp TCCSEEEEECTTTTSCH--------HHH----HHHHHHHHHHHHHHTCEEEEEESC
T ss_pred cCCCEEEECCCCccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEECCC
Confidence 37999999998776432 222 267778888888889999999994
No 55
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.64 E-value=1.1e-08 Score=95.71 Aligned_cols=45 Identities=11% Similarity=0.179 Sum_probs=34.2
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.+|+++++|+.++-+.. ..| .++...|+++.++.|+++|+++|-.
T Consensus 157 ~~P~lLLLDEP~s~LD~--------~~r----~~l~~~l~~l~~~~g~tvi~vTHd~ 201 (353)
T 1oxx_K 157 KDPSLLLLDEPFSNLDA--------RMR----DSARALVKEVQSRLGVTLLVVSHDP 201 (353)
T ss_dssp TCCSEEEEESTTTTSCG--------GGH----HHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred hCCCEEEEECCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 37999999998776532 122 2677778888888899999999953
No 56
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.61 E-value=4.1e-07 Score=79.11 Aligned_cols=45 Identities=13% Similarity=0.225 Sum_probs=32.5
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.+|+++++|+.++-+... .+ ..+.+.|++++++ +.+||+++|-..
T Consensus 150 ~~p~lllLDEPts~LD~~--------~~----~~l~~~l~~~~~~-g~tiiivtHd~~ 194 (214)
T 1sgw_A 150 VNAEIYVLDDPVVAIDED--------SK----HKVLKSILEILKE-KGIVIISSREEL 194 (214)
T ss_dssp SCCSEEEEESTTTTSCTT--------TH----HHHHHHHHHHHHH-HSEEEEEESSCC
T ss_pred hCCCEEEEECCCcCCCHH--------HH----HHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 479999999998875431 11 2666777777655 789999999654
No 57
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.61 E-value=1.1e-06 Score=79.16 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=33.4
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.+|+++++|+.++-+.. ..+ ..+.+.|++++++ |.+||+++|-..
T Consensus 155 ~~p~lllLDEPts~LD~--------~~~----~~l~~~l~~l~~~-g~tii~vtHd~~ 199 (266)
T 2yz2_A 155 HEPDILILDEPLVGLDR--------EGK----TDLLRIVEKWKTL-GKTVILISHDIE 199 (266)
T ss_dssp TCCSEEEEESTTTTCCH--------HHH----HHHHHHHHHHHHT-TCEEEEECSCCT
T ss_pred cCCCEEEEcCccccCCH--------HHH----HHHHHHHHHHHHc-CCEEEEEeCCHH
Confidence 37999999998877532 222 3677778888776 999999999643
No 58
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.60 E-value=1e-07 Score=79.97 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=21.5
Q ss_pred CCCCcEEEEecCCCCChhHHHHH
Q 047388 123 IETGAITEAFGEFRSGKTQLAHT 145 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~ 145 (352)
+++|+++.|+|+||||||||+..
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 67899999999999999999994
No 59
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.59 E-value=4.7e-08 Score=88.64 Aligned_cols=45 Identities=22% Similarity=0.269 Sum_probs=33.1
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEE--EEEccccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAV--YMTNQVIA 277 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~v--iv~~h~~~ 277 (352)
.+|+++++|+.++-+.. ..+ ..+.+.|++++++ |.+| |+++|-..
T Consensus 178 ~~p~lLlLDEPts~LD~--------~~~----~~l~~~l~~l~~~-g~tv~~iivtHd~~ 224 (279)
T 2ihy_A 178 GQPQVLILDEPAAGLDF--------IAR----ESLLSILDSLSDS-YPTLAMIYVTHFIE 224 (279)
T ss_dssp TCCSEEEEESTTTTCCH--------HHH----HHHHHHHHHHHHH-CTTCEEEEEESCGG
T ss_pred CCCCEEEEeCCccccCH--------HHH----HHHHHHHHHHHHC-CCEEEEEEEecCHH
Confidence 37999999998876532 222 3677778888776 8888 99988654
No 60
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.58 E-value=1.4e-07 Score=83.99 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=23.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
-+++|+++.|.||+|||||||+..++
T Consensus 31 ~i~~Ge~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 31 SIKQGEVIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999999999654
No 61
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.56 E-value=4.9e-08 Score=87.06 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=23.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
-+++|+++.|.||+|||||||+..++
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 57899999999999999999999654
No 62
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=98.55 E-value=1.3e-07 Score=68.79 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=61.9
Q ss_pred CCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHHHHhhcCCCchhhhHHh
Q 047388 37 QGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVNFGYITGSDALLR 101 (352)
Q Consensus 37 ~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (352)
+||++..++.|+++||.|+.|++..++.+|.+++|++++.+.++.+.+.+.+.+.++++.+++++
T Consensus 10 p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~~~~s~~~~~~~~~~~~ 74 (83)
T 2kz3_A 10 PGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEE 74 (83)
T ss_dssp TTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHCSSCCCCCCCCCC
T ss_pred CCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCcCcHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999998754
No 63
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.55 E-value=1.4e-07 Score=83.62 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=43.0
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhh
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAH 299 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~ 299 (352)
.+|+++++|+.++-+.. ..+ ..+.+.|++++++.|.+||+++|-.. .+..
T Consensus 143 ~~p~lllLDEPts~LD~--------~~~----~~~~~~l~~l~~~~g~tvi~vtHd~~------------------~~~~ 192 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDL--------KTK----GVLMEELRFVQREFDVPILHVTHDLI------------------EAAM 192 (240)
T ss_dssp TCCSSBEEESTTSSCCH--------HHH----HHHHHHHHHHHHHHTCCEEEEESCHH------------------HHHH
T ss_pred cCCCEEEEeCCcccCCH--------HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHH
Confidence 37899999998876432 222 36777888888778999999999543 1355
Q ss_pred ccceEEEEEe
Q 047388 300 AVTIRLMFRK 309 (352)
Q Consensus 300 ~~~~~i~L~~ 309 (352)
.+|.++.|..
T Consensus 193 ~~d~i~~l~~ 202 (240)
T 2onk_A 193 LADEVAVMLN 202 (240)
T ss_dssp HCSEEEEEET
T ss_pred hCCEEEEEEC
Confidence 6777777764
No 64
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.49 E-value=1.4e-07 Score=86.64 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=23.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
-+++|+++.|+||+|||||||+..++
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHT
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHH
Confidence 57899999999999999999998554
No 65
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.49 E-value=2.3e-07 Score=83.79 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=33.2
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+|+++++|+.++-+.. ..+ ..+.+.|++++++.+.+||+++|-..
T Consensus 174 ~p~lllLDEPts~LD~--------~~~----~~i~~~l~~~~~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 174 KPRLLILDNATSALDA--------GNQ----LRVQRLLYESPEWASRTVLLITQQLS 218 (271)
T ss_dssp CCSEEEEESTTTTCCH--------HHH----HHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred CCCEEEEECCccCCCH--------HHH----HHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 7999999998876532 222 26777788877667899999999543
No 66
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.49 E-value=8.4e-07 Score=72.63 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=33.0
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
+|+.+.|+|++|+|||+|+..++..... .+.+++|++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~------~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE------AGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT------TTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh------cCCcEEEEcHHH
Confidence 8999999999999999999988776543 345688988764
No 67
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=98.49 E-value=4.9e-07 Score=76.18 Aligned_cols=126 Identities=16% Similarity=0.148 Sum_probs=66.7
Q ss_pred EEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEec-CCHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARA-YTYEHQ 206 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~ 206 (352)
++.|+|++|||||+|+.+++.. +.+++|++|...++.+...++.+...-.+ .++..+.. .+..+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----------~~~~~yiaT~~~~d~e~~~rI~~h~~~R~----~~w~tiE~p~~l~~- 65 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----------APQVLYIATSQILDDEMAARIQHHKDGRP----AHWRTAECWRHLDT- 65 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----------CSSEEEEECCCC------CHHHHHHHTSC----TTEEEECCSSCGGG-
T ss_pred CEEEECCCCCcHHHHHHHHHhc----------CCCeEEEecCCCCCHHHHHHHHHHHhcCC----CCcEEEEcHhhHHH-
Confidence 4789999999999999998742 24699999987766543333332211111 12222221 22211
Q ss_pred HHHHHHHHHHhhcC--CceEEEEcccccchhcccCC-----Cc---chHH-HHHHHHHHHHHHHHHHHHhCcEEEEEccc
Q 047388 207 YNLLLGLAAKMSEE--PFRLLIVDSVIALFRVDFTG-----RG---ELAD-RQQKLGQMLSRLTKISEEFNVAVYMTNQV 275 (352)
Q Consensus 207 ~~~l~~l~~~l~~~--~~~lvvIDsl~~l~~~~~~~-----~g---~~~~-r~~~l~~i~~~L~~la~~~~~~viv~~h~ 275 (352)
.+... +.+.|+||+++.++...+.. .. +..+ ......++...+..+.+..+..|+|+|++
T Consensus 66 ---------~l~~~~~~~~~VLvDclt~wl~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~vlVsNEV 136 (180)
T 1c9k_A 66 ---------LITADLAPDDAILLECITTMVTNLLFALGGENDPEQWDYAAMERAIDDEIQILIAACQRCPAKVVLVTNEV 136 (180)
T ss_dssp ---------TSCTTSCTTCEEEEECHHHHHHHHHHHC----CTTSCCHHHHHHHHHHHHHHHHHHHHHCCSEEEEECCCC
T ss_pred ---------HHHhhcccCCeEEEcCHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHccCCCEEEEEccc
Confidence 12111 23799999999988654311 10 1110 01112344455556655555667777887
Q ss_pred cc
Q 047388 276 IA 277 (352)
Q Consensus 276 ~~ 277 (352)
..
T Consensus 137 G~ 138 (180)
T 1c9k_A 137 GM 138 (180)
T ss_dssp CS
T ss_pred cC
Confidence 65
No 68
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.48 E-value=7e-08 Score=85.77 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=24.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.||+|||||||+..++.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999999996543
No 69
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.48 E-value=1.6e-07 Score=79.21 Aligned_cols=43 Identities=23% Similarity=0.124 Sum_probs=32.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
.+++|..+.|+||||+|||+|+..++...... .+..++|++..
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-----~g~~~~~~~~~ 76 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK-----KGIRGYFFDTK 76 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH-----SCCCCCEEEHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHH-----cCCeEEEEEHH
Confidence 34568999999999999999999888766421 34567777643
No 70
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.45 E-value=2.4e-06 Score=84.42 Aligned_cols=138 Identities=14% Similarity=0.205 Sum_probs=74.7
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCC---CCCeEEEEeCCCCCC-hhhHHHHHHHcCCC---c-----cc
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRG---GNGKVAYIDTEGTFR-PDRIVPIAERFGMD---P-----GA 190 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg---~~~~vl~i~~e~~~~-~~rl~~~~~~~~~~---~-----~~ 190 (352)
+++|+++.|.|++|||||||+..++ ...++..|. .+..+.|+..+.... ...+.+........ . ++
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~--Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~ 368 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILV--GEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEE 368 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHT--TSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHH
Confidence 5799999999999999999999554 344444332 133455554322110 11122222111000 0 01
Q ss_pred ccccEEE-------EecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHH
Q 047388 191 VLDNIIY-------ARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISE 263 (352)
Q Consensus 191 ~~~~i~~-------~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~ 263 (352)
+++.+.+ ....+..+. +.+. +.+.+. .+|+++++|+.++.+. ...+ .++.+.|+++++
T Consensus 369 ~l~~~~l~~~~~~~~~~LSGGq~-QRv~-iAraL~-~~p~lLlLDEPT~gLD--------~~~~----~~i~~~l~~l~~ 433 (538)
T 3ozx_A 369 VTKRLNLHRLLESNVNDLSGGEL-QKLY-IAATLA-KEADLYVLDQPSSYLD--------VEER----YIVAKAIKRVTR 433 (538)
T ss_dssp TTTTTTGGGCTTSBGGGCCHHHH-HHHH-HHHHHH-SCCSEEEEESTTTTCC--------HHHH----HHHHHHHHHHHH
T ss_pred HHHHcCCHHHhcCChhhCCHHHH-HHHH-HHHHHH-cCCCEEEEeCCccCCC--------HHHH----HHHHHHHHHHHH
Confidence 1111100 011122221 1111 222222 4799999999988753 2222 377888899998
Q ss_pred HhCcEEEEEccccc
Q 047388 264 EFNVAVYMTNQVIA 277 (352)
Q Consensus 264 ~~~~~viv~~h~~~ 277 (352)
+.+.+||+++|-..
T Consensus 434 ~~g~tvi~vsHdl~ 447 (538)
T 3ozx_A 434 ERKAVTFIIDHDLS 447 (538)
T ss_dssp HTTCEEEEECSCHH
T ss_pred hCCCEEEEEeCCHH
Confidence 89999999999543
No 71
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.44 E-value=1.9e-06 Score=86.38 Aligned_cols=133 Identities=14% Similarity=0.135 Sum_probs=74.8
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCC--CCeEEEEeCCCCCC-hhhHHHH------------------H
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG--NGKVAYIDTEGTFR-PDRIVPI------------------A 181 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~--~~~vl~i~~e~~~~-~~rl~~~------------------~ 181 (352)
+++|+++.|.||+|+|||||+..++. ..++..|.- ...+.|+.-+.... ...+... +
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~G--l~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l 456 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAG--VEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELL 456 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHT--SSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhc--CCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHH
Confidence 47899999999999999999996643 444444432 34566765443211 1111111 1
Q ss_pred HHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHH
Q 047388 182 ERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKI 261 (352)
Q Consensus 182 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~l 261 (352)
+.+++.. ..++ .....+..+.. .+. +.+.+. .+++++++|+.++.+. ...+ ..+.+.|+++
T Consensus 457 ~~~~l~~--~~~~--~~~~LSGGe~Q-Rv~-iAraL~-~~p~lLlLDEPt~~LD--------~~~~----~~l~~~l~~l 517 (607)
T 3bk7_A 457 KPLGIID--LYDR--NVEDLSGGELQ-RVA-IAATLL-RDADIYLLDEPSAYLD--------VEQR----LAVSRAIRHL 517 (607)
T ss_dssp HHHTCTT--TTTS--BGGGCCHHHHH-HHH-HHHHHT-SCCSEEEEECTTTTCC--------HHHH----HHHHHHHHHH
T ss_pred HHcCCch--HhcC--ChhhCCHHHHH-HHH-HHHHHH-hCCCEEEEeCCccCCC--------HHHH----HHHHHHHHHH
Confidence 1122210 0010 00112222222 111 222222 4789999999988753 2222 3777888888
Q ss_pred HHHhCcEEEEEcccc
Q 047388 262 SEEFNVAVYMTNQVI 276 (352)
Q Consensus 262 a~~~~~~viv~~h~~ 276 (352)
+++.+.+||+++|-.
T Consensus 518 ~~~~g~tvi~vsHd~ 532 (607)
T 3bk7_A 518 MEKNEKTALVVEHDV 532 (607)
T ss_dssp HHHTTCEEEEECSCH
T ss_pred HHhCCCEEEEEeCCH
Confidence 888899999999954
No 72
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.42 E-value=1.5e-06 Score=86.00 Aligned_cols=138 Identities=12% Similarity=0.123 Sum_probs=75.8
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCC--CCeEEEEeCCCCCC-hhhHHHHHHHc---CCC-c---cccc
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG--NGKVAYIDTEGTFR-PDRIVPIAERF---GMD-P---GAVL 192 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~--~~~vl~i~~e~~~~-~~rl~~~~~~~---~~~-~---~~~~ 192 (352)
+++|+++.|.|++|||||||+..++. ..++..|.- ...+.|+.-+.... ...+....... ... . .+++
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~G--l~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l 386 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAG--VEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELL 386 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHT--SSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHH
Confidence 46899999999999999999996653 444443332 34567775543211 11111111110 000 0 1111
Q ss_pred ccEEE-------EecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 047388 193 DNIIY-------ARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEF 265 (352)
Q Consensus 193 ~~i~~-------~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~ 265 (352)
+.+.+ ....+..+... +. +.+.+. .+++++++|+.++.+. ...+ ..+.+.|++++++.
T Consensus 387 ~~~~l~~~~~~~~~~LSGGe~qr-v~-lAraL~-~~p~lLlLDEPt~~LD--------~~~~----~~i~~~l~~l~~~~ 451 (538)
T 1yqt_A 387 KPLGIIDLYDREVNELSGGELQR-VA-IAATLL-RDADIYLLDEPSAYLD--------VEQR----LAVSRAIRHLMEKN 451 (538)
T ss_dssp TTTTCGGGTTSBGGGCCHHHHHH-HH-HHHHHT-SCCSEEEEECTTTTCC--------HHHH----HHHHHHHHHHHHHH
T ss_pred HHcCChhhhcCChhhCCHHHHHH-HH-HHHHHH-hCCCEEEEeCCcccCC--------HHHH----HHHHHHHHHHHHhC
Confidence 11111 01122222221 11 222332 4799999999988753 2222 37778888888888
Q ss_pred CcEEEEEccccc
Q 047388 266 NVAVYMTNQVIA 277 (352)
Q Consensus 266 ~~~viv~~h~~~ 277 (352)
+.+||+++|-..
T Consensus 452 g~tvi~vsHd~~ 463 (538)
T 1yqt_A 452 EKTALVVEHDVL 463 (538)
T ss_dssp TCEEEEECSCHH
T ss_pred CCEEEEEeCCHH
Confidence 999999999543
No 73
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.38 E-value=2.2e-06 Score=84.77 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=32.7
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.+|+++++|+.++.+.. ..+ ..+...|+++++ .|.+||+++|-.
T Consensus 175 ~~P~lLlLDEPTs~LD~--------~~~----~~l~~~L~~l~~-~g~tvi~vsHd~ 218 (538)
T 1yqt_A 175 RNATFYFFDEPSSYLDI--------RQR----LNAARAIRRLSE-EGKSVLVVEHDL 218 (538)
T ss_dssp SCCSEEEEESTTTTCCH--------HHH----HHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred cCCCEEEEECCcccCCH--------HHH----HHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 47999999999887532 222 367777777766 599999999954
No 74
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.36 E-value=1e-06 Score=78.54 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=24.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.||+|||||||+..++.
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 25 VVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999997654
No 75
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.34 E-value=4.1e-06 Score=83.81 Aligned_cols=135 Identities=13% Similarity=0.162 Sum_probs=74.5
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCC--CCCeEEEEeCCCC--CChhhHHHHH---------------
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRG--GNGKVAYIDTEGT--FRPDRIVPIA--------------- 181 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg--~~~~vl~i~~e~~--~~~~rl~~~~--------------- 181 (352)
|-++.|+++.|.|++|+|||||+..++ ...++..|. ...++.|+..... +.. .+.+..
T Consensus 373 G~~~~GEiv~iiG~NGsGKSTLlk~l~--Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~-tv~e~~~~~~~~~~~~~~~~~ 449 (608)
T 3j16_B 373 GEFSDSEILVMMGENGTGKTTLIKLLA--GALKPDEGQDIPKLNVSMKPQKIAPKFPG-TVRQLFFKKIRGQFLNPQFQT 449 (608)
T ss_dssp EECCTTCEEEEESCTTSSHHHHHHHHH--TSSCCSBCCCCCSCCEEEECSSCCCCCCS-BHHHHHHHHCSSTTTSHHHHH
T ss_pred CccccceEEEEECCCCCcHHHHHHHHh--cCCCCCCCcCccCCcEEEecccccccCCc-cHHHHHHHHhhcccccHHHHH
Confidence 457788999999999999999999654 344444332 1224555543311 111 111111
Q ss_pred ---HHcCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHH
Q 047388 182 ---ERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRL 258 (352)
Q Consensus 182 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L 258 (352)
+.+++.. ..+. .....+..+.. .+. +.+.+. .+++++++|+.++.+. ...+ ..+.+.|
T Consensus 450 ~~l~~l~l~~--~~~~--~~~~LSGGqkQ-Rv~-iAraL~-~~p~lLlLDEPT~gLD--------~~~~----~~i~~ll 510 (608)
T 3j16_B 450 DVVKPLRIDD--IIDQ--EVQHLSGGELQ-RVA-IVLALG-IPADIYLIDEPSAYLD--------SEQR----IICSKVI 510 (608)
T ss_dssp HTHHHHTSTT--TSSS--BSSSCCHHHHH-HHH-HHHHTT-SCCSEEEECCTTTTCC--------HHHH----HHHHHHH
T ss_pred HHHHHcCChh--hhcC--ChhhCCHHHHH-HHH-HHHHHH-hCCCEEEEECCCCCCC--------HHHH----HHHHHHH
Confidence 1111110 0000 00112222221 111 222332 4799999999887743 2222 3777888
Q ss_pred HHHHHHhCcEEEEEccccc
Q 047388 259 TKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 259 ~~la~~~~~~viv~~h~~~ 277 (352)
++++++.|.|||+++|-..
T Consensus 511 ~~l~~~~g~tviivtHdl~ 529 (608)
T 3j16_B 511 RRFILHNKKTAFIVEHDFI 529 (608)
T ss_dssp HHHHHHHTCEEEEECSCHH
T ss_pred HHHHHhCCCEEEEEeCCHH
Confidence 8888888999999999543
No 76
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.33 E-value=7.6e-07 Score=89.04 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|+||+|||||||+..++.
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999999996654
No 77
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.33 E-value=3.6e-07 Score=82.28 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=24.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.||+|||||||+..++.
T Consensus 42 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 42 DVHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999997654
No 78
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.32 E-value=2.1e-05 Score=76.18 Aligned_cols=85 Identities=13% Similarity=0.009 Sum_probs=51.4
Q ss_pred hCCCHHHHHHHHHHHHHHhhc-CCCchhhhHHhhhcccccccCChhhHHhhc-------CCCCCCcEEEEecCCCCChhH
Q 047388 70 KGLSEAKVEKICEAAEKIVNF-GYITGSDALLRRKAVIKITTGSQALDELLG-------GGIETGAITEAFGEFRSGKTQ 141 (352)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~TG~~~LD~~L~-------GGl~~G~i~~I~G~~GsGKTt 141 (352)
.+++..-+.++++.+.+.... .......+..... ..|-++|+ =-+.+|+++.|+|++||||||
T Consensus 238 aDv~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~---------~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTT 308 (503)
T 2yhs_A 238 ADVGVETTRKIITNLTEGASRKQLRDAEALYGLLK---------EEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTT 308 (503)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCCBGGGHHHHHH---------HHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH---------HHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHH
Confidence 578877777777776654422 2222222211100 01222221 136789999999999999999
Q ss_pred HHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 142 LAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 142 l~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
|+..|+..... .+++|++.+..
T Consensus 309 Ll~~LAgll~~------~~G~V~l~g~D 330 (503)
T 2yhs_A 309 TIGKLARQFEQ------QGKSVMLAAGD 330 (503)
T ss_dssp HHHHHHHHHHH------TTCCEEEECCC
T ss_pred HHHHHHHHhhh------cCCeEEEecCc
Confidence 99988766543 45677666554
No 79
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=2.8e-06 Score=80.37 Aligned_cols=118 Identities=18% Similarity=0.235 Sum_probs=72.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
|+++-.=++++||||+|||.++..+|...- ...+.++...-++. +
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~---------~~f~~v~~s~l~sk--------------------------~ 222 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTD---------CKFIRVSGAELVQK--------------------------Y 222 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHT---------CEEEEEEGGGGSCS--------------------------S
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhC---------CCceEEEhHHhhcc--------------------------c
Confidence 677766799999999999999998887643 34555554321110 0
Q ss_pred CHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCc-chHHHHHHHHHHHHHHHHHHHHhCcEEEEEccc
Q 047388 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRG-ELADRQQKLGQMLSRLTKISEEFNVAVYMTNQV 275 (352)
Q Consensus 202 ~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g-~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~ 275 (352)
..+....+..+........|.+|+||++-++.+....+.+ .....++.+..++..|..+....++.||.++.-
T Consensus 223 -vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNr 296 (405)
T 4b4t_J 223 -IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNR 296 (405)
T ss_dssp -TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESC
T ss_pred -cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCC
Confidence 0111222333444445567999999999999765433221 222334456677777776666667777765543
No 80
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.31 E-value=1e-05 Score=73.92 Aligned_cols=138 Identities=16% Similarity=0.120 Sum_probs=79.6
Q ss_pred hCCCHHHHHHHHHHHHHHhhcC-C---CchhhhHHhhhcccccccCChhhHHhhcCCCCC-------CcEEEEecCCCCC
Q 047388 70 KGLSEAKVEKICEAAEKIVNFG-Y---ITGSDALLRRKAVIKITTGSQALDELLGGGIET-------GAITEAFGEFRSG 138 (352)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~i~TG~~~LD~~L~GGl~~-------G~i~~I~G~~GsG 138 (352)
.+++..-+.++++.+.+..... . .+..+ ..+..+...|...++++... +.++.++|++|+|
T Consensus 39 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~G 110 (297)
T 1j8m_F 39 ADVNVKLVFSLTNKIKERLKNEKPPTYIERRE--------WFIKIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTG 110 (297)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHH--------HHHHHHHHHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSS
T ss_pred cCCCHHHHHHHHHHHHHHHhhccccccCChHH--------HHHHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCC
Confidence 4666666666666665443211 1 01111 12344556677766554322 8899999999999
Q ss_pred hhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCCh--hhHHHHHHHcCCCcccccccEEEEec---CCHHHHHHHHHHH
Q 047388 139 KTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRP--DRIVPIAERFGMDPGAVLDNIIYARA---YTYEHQYNLLLGL 213 (352)
Q Consensus 139 KTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~--~rl~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~l~~l 213 (352)
|||++..++..... .+++|++++.+...+. ..+..+.++.+++. +.. .++... +...
T Consensus 111 KTT~~~~la~~~~~------~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v---------~~~~~~~~p~~~---~~~~ 172 (297)
T 1j8m_F 111 KTTTAGKLAYFYKK------KGFKVGLVGADVYRPAALEQLQQLGQQIGVPV---------YGEPGEKDVVGI---AKRG 172 (297)
T ss_dssp TTHHHHHHHHHHHH------TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCE---------ECCTTCCCHHHH---HHHH
T ss_pred HHHHHHHHHHHHHH------CCCeEEEEecCCCCHHHHHHHHHHhccCCeEE---------EecCCCCCHHHH---HHHH
Confidence 99999999887765 5789999998753221 22333444444432 211 223322 2222
Q ss_pred HHHhhcCCceEEEEcccccc
Q 047388 214 AAKMSEEPFRLLIVDSVIAL 233 (352)
Q Consensus 214 ~~~l~~~~~~lvvIDsl~~l 233 (352)
...+...+.++|+||....+
T Consensus 173 l~~~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 173 VEKFLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHHHHHTTCSEEEEECCCSC
T ss_pred HHHHHhCCCCEEEEeCCCCc
Confidence 23333356899999986544
No 81
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.29 E-value=1.2e-05 Score=73.68 Aligned_cols=39 Identities=23% Similarity=0.165 Sum_probs=31.4
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
+|+++.|+||+||||||++..++..... .+++|.+.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~------~~g~V~l~g~D 139 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN------LGKKVMFCAGD 139 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT------TTCCEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh------cCCEEEEEeec
Confidence 6899999999999999999988876553 45677766554
No 82
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.28 E-value=4.3e-06 Score=83.78 Aligned_cols=44 Identities=9% Similarity=0.174 Sum_probs=32.6
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.+|+++++|+.++.+. ...+ ..+.+.|+++++ .|.+||+++|-.
T Consensus 245 ~~P~lLlLDEPTs~LD--------~~~~----~~l~~~L~~l~~-~g~tvIivsHdl 288 (607)
T 3bk7_A 245 RKAHFYFFDEPSSYLD--------IRQR----LKVARVIRRLAN-EGKAVLVVEHDL 288 (607)
T ss_dssp SCCSEEEEECTTTTCC--------HHHH----HHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred cCCCEEEEECCcccCC--------HHHH----HHHHHHHHHHHh-cCCEEEEEecCh
Confidence 4799999999988753 2222 267777787766 499999999943
No 83
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.27 E-value=5.8e-07 Score=85.12 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=24.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.||||||||||+..++.
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 588999999999999999999996653
No 84
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.26 E-value=9.9e-06 Score=72.52 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=24.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.||+|||||||+..++.
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999999996653
No 85
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.25 E-value=2.7e-06 Score=75.11 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=23.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
-+++|+++.|.||+|||||||+..++
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHh
Confidence 58899999999999999999999654
No 86
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.25 E-value=1.6e-06 Score=76.15 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
-+++|+++.|.||+|||||||+..++
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999999999654
No 87
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=4.1e-06 Score=80.12 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=73.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
|+++-.=++++||||+|||.++..+|... +...+.++...-++..
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~---------~~~~~~v~~~~l~~~~-------------------------- 246 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST---------KAAFIRVNGSEFVHKY-------------------------- 246 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH---------TCEEEEEEGGGTCCSS--------------------------
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---------CCCeEEEecchhhccc--------------------------
Confidence 77777789999999999999999888764 3356666543321110
Q ss_pred CHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCC-cchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGR-GELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 202 ~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~-g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
..+....+..+........|.+++||.+.++......+. +.-...++.+..++..|..+....++.||.++.-.
T Consensus 247 -~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~ 321 (428)
T 4b4t_K 247 -LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRA 321 (428)
T ss_dssp -CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCS
T ss_pred -cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCCh
Confidence 001112223333344456789999999999876432211 11123334567777778777666677777665433
No 88
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=98.23 E-value=2.1e-06 Score=60.33 Aligned_cols=55 Identities=27% Similarity=0.291 Sum_probs=51.2
Q ss_pred HhCCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHHHHhh
Q 047388 35 ISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEKIVN 89 (352)
Q Consensus 35 ~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 89 (352)
+..|+++.++++|.++||+|++++++.++++|..+.|+++..+.++...+++.+.
T Consensus 10 ~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~~~l~ 64 (70)
T 1u9l_A 10 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALA 64 (70)
T ss_dssp HHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 4469999999999999999999999999999999999999999999999887753
No 89
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.21 E-value=1.1e-06 Score=87.80 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|+||+|||||||+..++.
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 365 KIPAGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp EECTTCEEEEEECTTSSHHHHHHHHTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 478999999999999999999996543
No 90
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.21 E-value=5e-06 Score=74.56 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-++ |+++.|.||+|||||||+..++.
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHHHHHHTT
T ss_pred EEC-CEEEEEECCCCCCHHHHHHHHhC
Confidence 478 99999999999999999996654
No 91
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.21 E-value=1.4e-06 Score=87.08 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=30.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
-+++|+++.|+||+|||||||+..++. ..+ ...+.++++..+
T Consensus 365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g--~~~-----~~~G~i~i~g~~ 406 (587)
T 3qf4_A 365 SVKPGSLVAVLGETGSGKSTLMNLIPR--LID-----PERGRVEVDELD 406 (587)
T ss_dssp EECTTCEEEEECSSSSSHHHHHHTTTT--SSC-----CSEEEEEESSSB
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC--Ccc-----CCCcEEEECCEE
Confidence 478999999999999999999985543 332 234556666553
No 92
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=98.20 E-value=6e-06 Score=76.40 Aligned_cols=103 Identities=6% Similarity=0.139 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhhc--CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHh--CcEEEEEcccccCCCCC
Q 047388 207 YNLLLGLAAKMSE--EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEF--NVAVYMTNQVIADPGGG 282 (352)
Q Consensus 207 ~~~l~~l~~~l~~--~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~--~~~viv~~h~~~~~~~~ 282 (352)
..++.++.+.+.. .++-.|+|=|+.+..+.... . .....+..|+..|+.|.+.+ +++++++-...-
T Consensus 201 ~~lL~~I~~~i~~~~~~ilRIvI~SLgSP~wy~~~----~-~~~~~ll~FL~~LRaLlR~~~~~~v~~iTlP~~l----- 270 (361)
T 4a8j_A 201 STILSQIEQTIKRNDKKLIRIVIPSLLHPAMYPPK----M-FESSEIIGLMHGVRSLVKKYYERVVLFASISIDI----- 270 (361)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEETTTTCTTTSCGG----G-GBHHHHHHHHHHHHHHHHHTTTTEEEEEEEECTT-----
T ss_pred HHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCc----c-cCHHHHHHHHHHHHHHHhhcCCceEEEEEEChHH-----
Confidence 3455555555533 36778889888776542111 0 11245679999999999987 446666533221
Q ss_pred cccCCCCCCCcchhhhhccceEEEEEeecC-----------------CeEEEEEEeCCCC
Q 047388 283 VFISDPKKPAGGHVLAHAVTIRLMFRKGKG-----------------EQRVCKVFDAPNL 325 (352)
Q Consensus 283 ~~~~~~~~~~gg~~~~~~~~~~i~L~~~~~-----------------~~R~~~i~Ks~~~ 325 (352)
| .+..-..|++.+|.+|.|.-..+ ..=.++|.|-|.+
T Consensus 271 -~-----~~~l~~rle~l~D~vi~L~pF~~~~~~~~~~~yk~~p~~~~~GLl~V~KLP~l 324 (361)
T 4a8j_A 271 -I-----TPPLLVLLRNMFDSVINLEPFNQEMTEFLERVYKSQPGKIQHGLVHILKLPVF 324 (361)
T ss_dssp -S-----CHHHHHHHHHHCSEEEEEEECCHHHHHHHHHHTTTCGGGCCCEEEEEEECTTH
T ss_pred -c-----ChHHHHHHHHhCcEEEEeeecCCchhhhcccccccCcccccceEEEEEecccc
Confidence 1 02345789999999999986311 2457888886654
No 93
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.19 E-value=1.5e-06 Score=87.13 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.||+|||||||+..++.
T Consensus 366 ~i~~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 366 SIPSGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp EECTTCEEEEECCTTSSSTHHHHHHTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999999996543
No 94
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=98.19 E-value=3e-06 Score=59.65 Aligned_cols=55 Identities=25% Similarity=0.360 Sum_probs=50.8
Q ss_pred cHHHHHhCCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHHH
Q 047388 30 AIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEK 86 (352)
Q Consensus 30 ~~~~l~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 86 (352)
.+..| +|+++.++.+|.++||+|+++++..+..+|..++|+++.++.+++..+++
T Consensus 8 ~l~~L--~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 8 DLLNL--EGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHSS--TTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHc--CCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 34444 59999999999999999999999999999999999999999999999987
No 95
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.19 E-value=9.1e-06 Score=73.30 Aligned_cols=119 Identities=18% Similarity=0.155 Sum_probs=65.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
|+.++.-+.|+||||+|||+++..++... +..+++++...-+...
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~---------~~~~~~v~~~~~~~~~-------------------------- 91 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATET---------NATFIRVVGSELVKKF-------------------------- 91 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHT---------TCEEEEEEGGGGCCCS--------------------------
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh---------CCCEEEEehHHHHHhc--------------------------
Confidence 56777789999999999999999887652 4466776543211100
Q ss_pred CHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCC-cchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGR-GELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 202 ~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~-g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.......+..+........+.+|+||++..+........ +...+.+..+..++..+..+....++.||.+++..
T Consensus 92 -~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 92 -IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRP 166 (285)
T ss_dssp -TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCG
T ss_pred -cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence 001112222233333445788999999998865322111 11122233333443333322233466677766543
No 96
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.19 E-value=2.2e-05 Score=71.76 Aligned_cols=44 Identities=25% Similarity=0.185 Sum_probs=33.7
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFR 173 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~ 173 (352)
+++|+++.|+|++|+||||++..++..... .+++|.+.+. +.+.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~------~~g~V~l~g~-d~~r 140 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKN------EGTKVLMAAG-DTFR 140 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHH------TTCCEEEECC-CCSC
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHH------cCCeEEEEee-cccc
Confidence 678999999999999999999988876543 4566666554 3444
No 97
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=7.4e-06 Score=78.51 Aligned_cols=118 Identities=16% Similarity=0.177 Sum_probs=71.1
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEec
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARA 200 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 200 (352)
.|+++-.=++++||||||||.|+..+|...- ...++++...-++..
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~~---------~~~~~v~~s~l~sk~------------------------- 255 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIG---------ANFIFSPASGIVDKY------------------------- 255 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHT---------CEEEEEEGGGTCCSS-------------------------
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHhC---------CCEEEEehhhhcccc-------------------------
Confidence 4788888899999999999999998887643 356666543321110
Q ss_pred CCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCC-cchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcc
Q 047388 201 YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGR-GELADRQQKLGQMLSRLTKISEEFNVAVYMTNQ 274 (352)
Q Consensus 201 ~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~-g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h 274 (352)
..+....+..+........|.+|+||.+-++......+. ..-...+..+..++..|..+....++.||.++.
T Consensus 256 --~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATN 328 (437)
T 4b4t_L 256 --IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATN 328 (437)
T ss_dssp --SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEES
T ss_pred --chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecC
Confidence 001112233333444556899999999999876432221 111233344556666665555455667776544
No 98
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.19 E-value=1.9e-06 Score=86.40 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=23.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
-+++|+++.|+||+|||||||+..++
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHT
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 47899999999999999999998554
No 99
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.19 E-value=1e-05 Score=80.94 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=23.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+++.|.||+|+|||||+..++.
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhc
Confidence 367999999999999999999995543
No 100
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.17 E-value=1.2e-05 Score=74.30 Aligned_cols=56 Identities=23% Similarity=0.208 Sum_probs=40.5
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCC---hhhHHHHHHHcCC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFR---PDRIVPIAERFGM 186 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~---~~rl~~~~~~~~~ 186 (352)
++|+++.|+|++|+||||++..++..... .+++|.+.+.+- +. .+.+..+.++.++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~------~~g~V~l~g~D~-~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN------HGFSVVIAASDT-FRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH------TTCCEEEEEECC-SSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh------cCCEEEEEeecc-cccchHHHHHHHHHHcCc
Confidence 67999999999999999999988876544 567787776543 22 2334555666653
No 101
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=4.7e-06 Score=79.84 Aligned_cols=121 Identities=18% Similarity=0.184 Sum_probs=71.1
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEec
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARA 200 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 200 (352)
.|+++-.=++++||||||||.|+..+|...- ...+.++...-.+.
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~~---------~~f~~v~~s~l~~~-------------------------- 254 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQTN---------ATFLKLAAPQLVQM-------------------------- 254 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHT---------CEEEEEEGGGGCSS--------------------------
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHhC---------CCEEEEehhhhhhc--------------------------
Confidence 4788778899999999999999998887643 34555554321110
Q ss_pred CCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCc-chHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 201 YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRG-ELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 201 ~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g-~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+ ..+....+..+........|.+|+||.+-++......+.+ .....++.+..++..|..+....++.||.++.-..
T Consensus 255 ~-vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~ 331 (434)
T 4b4t_M 255 Y-IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVD 331 (434)
T ss_dssp C-SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCC
T ss_pred c-cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCch
Confidence 0 0011122333333344457899999999998765332211 11233344556666665555555677776554333
No 102
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.15 E-value=7e-05 Score=71.70 Aligned_cols=93 Identities=17% Similarity=0.203 Sum_probs=56.5
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChh---hHHHHHHHcCCCcccccccEEEEecC
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPD---RIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~---rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
++.++.++|++|+||||++..++..... .+.+|++++... +.+. .+..+.+..++.. +...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~------~G~kVllv~~D~-~r~~a~eqL~~~~~~~gv~~---------~~~~ 159 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK------RGYKVGLVAADV-YRPAAYDQLLQLGNQIGVQV---------YGEP 159 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH------TTCCEEEEEECC-SCHHHHHHHHHHHHTTTCCE---------ECCT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEEecCc-cchhHHHHHHHHHHhcCCce---------eecc
Confidence 4789999999999999999999887765 678999998763 3433 2333444444432 1111
Q ss_pred CHHHHHHHHHHHHHHhhcCCceEEEEcccccc
Q 047388 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIAL 233 (352)
Q Consensus 202 ~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l 233 (352)
.......+.......+...++++||||....+
T Consensus 160 ~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 160 NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCS
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCc
Confidence 11111222222223333457888899976543
No 103
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.14 E-value=1.2e-05 Score=79.39 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.3
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHH
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
.++|+++.|.||+|||||||+..++
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~ 46 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILA 46 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHh
Confidence 4589999999999999999999554
No 104
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=9.6e-06 Score=77.10 Aligned_cols=123 Identities=19% Similarity=0.202 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEec
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARA 200 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 200 (352)
.|+++-.=++++||||+|||.|+..+|...- ...+.++...-++.
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~---------~~fi~v~~s~l~sk-------------------------- 255 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTS---------ATFLRIVGSELIQK-------------------------- 255 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHHT---------CEEEEEESGGGCCS--------------------------
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHhC---------CCEEEEEHHHhhhc--------------------------
Confidence 4788778899999999999999998887643 34555554321110
Q ss_pred CCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCC-cchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCC
Q 047388 201 YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGR-GELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADP 279 (352)
Q Consensus 201 ~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~-g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~ 279 (352)
+ ..+....+..+........|.+|+||++.++......+. +...+.++.+..++..+..+....++.||.++.-....
T Consensus 256 ~-vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~L 334 (437)
T 4b4t_I 256 Y-LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETL 334 (437)
T ss_dssp S-SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTC
T ss_pred c-CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhc
Confidence 0 001122233333344556789999999999876533221 11123334455666666655555566677655433333
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.13 E-value=9.3e-07 Score=75.03 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=63.2
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYE 204 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~ 204 (352)
+|.++.++|++|+||||++++++.+... .+.+++++....+-... ...+..+.+... ..+. ..+..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~------~g~~v~~~~~~~d~r~~-~~~i~s~~g~~~----~~~~---~~~~~ 67 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL------GKKKVAVFKPKIDSRYH-STMIVSHSGNGV----EAHV---IERPE 67 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH------TTCEEEEEEEC-----C-CCEECC----CE----ECEE---ESSGG
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEeeccccccC-cccEEecCCCce----eeEE---ECCHH
Confidence 4789999999999999999999887765 56788887654220000 000001111111 1111 11111
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 205 HQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 205 ~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+ +...+. .+.++|+||+++.+.. .++..|+.++.+ ++.|+++.+...
T Consensus 68 ~-------~~~~~~-~~~dvviIDE~Q~~~~-----------------~~~~~l~~l~~~-~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 68 E-------MRKYIE-EDTRGVFIDEVQFFNP-----------------SLFEVVKDLLDR-GIDVFCAGLDLT 114 (184)
T ss_dssp G-------GGGGCC-TTEEEEEECCGGGSCT-----------------THHHHHHHHHHT-TCEEEEEEESBC
T ss_pred H-------HHHHhc-CCCCEEEEECcccCCH-----------------HHHHHHHHHHHC-CCCEEEEeeccc
Confidence 1 111111 2578999999987521 233445666665 899998877543
No 106
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.13 E-value=2.9e-05 Score=72.66 Aligned_cols=41 Identities=20% Similarity=0.104 Sum_probs=32.4
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
+++|+++.|+|++||||||++..++..... .+++|.+.+.+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~------~~G~V~l~g~D 194 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKN------EGTKVLMAAGD 194 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHH------TTCCEEEECCC
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccc------cCCEEEEeccc
Confidence 568999999999999999999988876543 45666665543
No 107
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.12 E-value=1.5e-05 Score=72.43 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=31.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCC--CCCeEEEEeCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRG--GNGKVAYIDTE 169 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg--~~~~vl~i~~e 169 (352)
-+++|+++.|.||+|||||||+..++ ...++..|. .++.+.|+..+
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~--Gl~~p~~G~I~~~g~i~~v~Q~ 107 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIM--GELEPSEGKIKHSGRISFCSQN 107 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHT--TSSCEEEEEEECCSCEEEECSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHh--cCCCCCCcEEEECCEEEEEeCC
Confidence 47899999999999999999999654 334333221 13345666544
No 108
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.09 E-value=2.4e-06 Score=85.28 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.2
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
-+++|+++.|+||+|||||||+..++
T Consensus 363 ~i~~G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 363 SIEKGETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp EECTTCEEEEECSTTSSHHHHHTTTT
T ss_pred EECCCCEEEEECCCCChHHHHHHHHh
Confidence 47899999999999999999998554
No 109
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=1.4e-05 Score=76.73 Aligned_cols=118 Identities=15% Similarity=0.166 Sum_probs=69.5
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEec
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARA 200 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 200 (352)
-|+++-.=++|+||||+|||.|+..+|..+- ...+.++...-++.
T Consensus 238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~---------~~fi~vs~s~L~sk-------------------------- 282 (467)
T 4b4t_H 238 LGIDPPKGILLYGPPGTGKTLCARAVANRTD---------ATFIRVIGSELVQK-------------------------- 282 (467)
T ss_dssp HTCCCCSEEEECSCTTSSHHHHHHHHHHHHT---------CEEEEEEGGGGCCC--------------------------
T ss_pred CCCCCCCceEeeCCCCCcHHHHHHHHHhccC---------CCeEEEEhHHhhcc--------------------------
Confidence 3788888899999999999999998887643 34555554321110
Q ss_pred CCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCC-cchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcc
Q 047388 201 YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGR-GELADRQQKLGQMLSRLTKISEEFNVAVYMTNQ 274 (352)
Q Consensus 201 ~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~-g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h 274 (352)
+ ..+....+..+........+.+|+||.+.++......+. +.....++.+..++..|..+....++.||.++.
T Consensus 283 ~-vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATN 356 (467)
T 4b4t_H 283 Y-VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATN 356 (467)
T ss_dssp S-SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECS
T ss_pred c-CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCC
Confidence 0 001112233333344556789999999999876433221 222333334455555555544455666666544
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.98 E-value=9.6e-06 Score=75.92 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=24.3
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhc
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQ 151 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~ 151 (352)
..+|+++.|+||+|||||||+..++....
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 36778999999999999999997765543
No 111
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.98 E-value=3.4e-05 Score=69.07 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=29.4
Q ss_pred hhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 113 QALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 113 ~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
+.|+.+. +++|+++.|+||+|||||||+..++...
T Consensus 15 ~vl~~i~---i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 15 DKVLELC---HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp THHHHGG---GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHh---hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3566654 8999999999999999999999877654
No 112
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.97 E-value=3.8e-05 Score=70.86 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=64.2
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEec
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARA 200 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 200 (352)
|+..+..-+.|+||||+|||+|+..++... .+...++++...-+... .|
T Consensus 40 ~~~~~~~~iLL~GppGtGKT~la~ala~~~--------~~~~~~~i~~~~l~~~~--------~g--------------- 88 (322)
T 1xwi_A 40 GKRTPWRGILLFGPPGTGKSYLAKAVATEA--------NNSTFFSISSSDLVSKW--------LG--------------- 88 (322)
T ss_dssp TTCCCCSEEEEESSSSSCHHHHHHHHHHHT--------TSCEEEEEECCSSCCSS--------CC---------------
T ss_pred CCCCCCceEEEECCCCccHHHHHHHHHHHc--------CCCcEEEEEhHHHHhhh--------hh---------------
Confidence 556667789999999999999999888653 13456777765321110 00
Q ss_pred CCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHH-HhCcEEEEEcc
Q 047388 201 YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISE-EFNVAVYMTNQ 274 (352)
Q Consensus 201 ~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~-~~~~~viv~~h 274 (352)
.... .+..+........+.+|+||++..+......+..+... +.+.+++..+..+.. ..++.||.++.
T Consensus 89 -~~~~---~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~--~~~~~ll~~ld~~~~~~~~v~vI~atn 157 (322)
T 1xwi_A 89 -ESEK---LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR--RIKTEFLVQMQGVGVDNDGILVLGATN 157 (322)
T ss_dssp -SCHH---HHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHH--HHHHHHHHHHHCSSSCCTTEEEEEEES
T ss_pred -HHHH---HHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHH--HHHHHHHHHHhcccccCCCEEEEEecC
Confidence 0111 12222223334578999999999886543222112222 223344444443321 23455555443
No 113
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.97 E-value=4.6e-05 Score=79.65 Aligned_cols=133 Identities=12% Similarity=0.120 Sum_probs=69.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC--CCC---------------hhhHHHHHHHc
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG--TFR---------------PDRIVPIAERF 184 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~--~~~---------------~~rl~~~~~~~ 184 (352)
-+++|+++.|.|++|||||||+..++.......... ...++.|+..+. .+. ..++...++.+
T Consensus 457 ~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~-~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~l 535 (986)
T 2iw3_A 457 RLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQ-EECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEF 535 (986)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCT-TTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccc-cceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHc
Confidence 478999999999999999999998874211100000 112345554221 111 12333444455
Q ss_pred CCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHH
Q 047388 185 GMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEE 264 (352)
Q Consensus 185 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~ 264 (352)
|+... ..++ .....+..+.. .+. +.+.+. .+++++++|+.++.+.. ..+ ..+.+.|+.
T Consensus 536 gL~~~-~~~~--~~~~LSGGqkQ-Rva-LArAL~-~~P~lLLLDEPTs~LD~--------~~~----~~l~~~L~~---- 593 (986)
T 2iw3_A 536 GFTDE-MIAM--PISALSGGWKM-KLA-LARAVL-RNADILLLDEPTNHLDT--------VNV----AWLVNYLNT---- 593 (986)
T ss_dssp TCCHH-HHHS--BGGGCCHHHHH-HHH-HHHHHH-TTCSEEEEESTTTTCCH--------HHH----HHHHHHHHH----
T ss_pred CCChh-hhcC--CcccCCHHHHH-HHH-HHHHHh-cCCCEEEEECCccCCCH--------HHH----HHHHHHHHh----
Confidence 54310 0000 00112222221 111 112222 47999999999887532 222 245555554
Q ss_pred hCcEEEEEccccc
Q 047388 265 FNVAVYMTNQVIA 277 (352)
Q Consensus 265 ~~~~viv~~h~~~ 277 (352)
.|.+||+++|-..
T Consensus 594 ~g~tvIivSHdl~ 606 (986)
T 2iw3_A 594 CGITSITISHDSV 606 (986)
T ss_dssp SCSEEEEECSCHH
T ss_pred CCCEEEEEECCHH
Confidence 5899999999543
No 114
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.97 E-value=1.9e-05 Score=80.28 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=31.7
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+|+++++|+.++-+.+ .. ...+.+.|++++++ |.|||+++|-..
T Consensus 564 ~p~llllDEPt~~LD~--------~~----~~~i~~~l~~l~~~-g~tvi~vtHd~~ 607 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHV--------DD----IARLLDVLHRLVDN-GDTVLVIEHNLD 607 (670)
T ss_dssp SCEEEEEESTTTTCCH--------HH----HHHHHHHHHHHHHT-TCEEEEECCCHH
T ss_pred CCcEEEEeCCCCCCCH--------HH----HHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 4689999999877532 22 23677778888654 999999999653
No 115
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.94 E-value=0.00013 Score=68.44 Aligned_cols=119 Identities=16% Similarity=0.153 Sum_probs=68.8
Q ss_pred EEEEecCCCCChhHHHHHHHHHhcCCCccCCC-CCeEEEEeCCCCCCh-hhHHHHHHHcCCCcccccccEEEEecCCHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG-NGKVAYIDTEGTFRP-DRIVPIAERFGMDPGAVLDNIIYARAYTYEH 205 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~-~~~vl~i~~e~~~~~-~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 205 (352)
.+.|+||||+|||+++..++..... . +..++|++....... ..+..++..++..... .......
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~--------~~~~~~~ 111 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD------KTTARFVYINGFIYRNFTAIIGEIARSLNIPFPR--------RGLSRDE 111 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT------SCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCS--------SCCCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh------hcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCC--------CCCCHHH
Confidence 8999999999999999988766543 2 467899986554433 3344555666543210 0112233
Q ss_pred HHHHHHHHHHHhhc-CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHH--hCcEEEEEcccc
Q 047388 206 QYNLLLGLAAKMSE-EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEE--FNVAVYMTNQVI 276 (352)
Q Consensus 206 ~~~~l~~l~~~l~~-~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~--~~~~viv~~h~~ 276 (352)
..+ .+...+.. .++.+|+||++..+- . ..+..+.+.+..+... .++++|++++..
T Consensus 112 ~~~---~l~~~l~~~~~~~vlilDE~~~l~----------~---~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 112 FLA---LLVEHLRERDLYMFLVLDDAFNLA----------P---DILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHH---HHHHHHHHTTCCEEEEEETGGGSC----------H---HHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHH---HHHHHHhhcCCeEEEEEECccccc----------h---HHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 222 22233332 357899999988771 0 1122343444333321 478888876643
No 116
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.94 E-value=7.6e-06 Score=89.11 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=23.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|+.+.|+|++|||||||+.-+..
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTT
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhcc
Confidence 589999999999999999999985543
No 117
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.93 E-value=3.7e-06 Score=91.53 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
-+++|+.+.|+|++|||||||+.-+.
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHT
T ss_pred EECCCCEEEEECCCCChHHHHHHHHh
Confidence 47899999999999999999998554
No 118
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.90 E-value=7.6e-05 Score=69.57 Aligned_cols=43 Identities=26% Similarity=0.340 Sum_probs=37.4
Q ss_pred cccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 106 IKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 106 ~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
..+.||+..||.++ -+.+|+++.|+|++|+|||||+..++...
T Consensus 53 ~~~~tg~~ald~ll--~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 53 QPFILGVRAIDGLL--TCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp SEECCSCHHHHHHS--CEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eecCCCCEEEEeee--eecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35678999999986 68999999999999999999998777654
No 119
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.90 E-value=3e-05 Score=67.55 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=35.8
Q ss_pred hHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 115 LDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 115 LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
|..+..++ .+..+.|+||||+|||+++..++..... .+..++|++...
T Consensus 43 l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~------~~~~~~~~~~~~ 90 (242)
T 3bos_A 43 LKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANE------LERRSFYIPLGI 90 (242)
T ss_dssp HHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEEGGG
T ss_pred HHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEEEHHH
Confidence 44444333 5788999999999999999998876654 356788887653
No 120
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.89 E-value=4.1e-05 Score=77.78 Aligned_cols=42 Identities=10% Similarity=0.168 Sum_probs=30.1
Q ss_pred ceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 222 FRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 222 ~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
++++++|+.++.+.+. .+ ..+.+.|+++.+ .|.|||+++|-.
T Consensus 223 ~~lLlLDEPtsgLD~~--------~~----~~l~~~l~~l~~-~g~tvi~vtHd~ 264 (670)
T 3ux8_A 223 GVLYVLDEPSIGLHQR--------DN----DRLIATLKSMRD-LGNTLIVVEHDE 264 (670)
T ss_dssp SCEEEEECTTTTCCGG--------GH----HHHHHHHHHHHH-TTCEEEEECCCH
T ss_pred CCEEEEECCccCCCHH--------HH----HHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 3499999998876431 11 266777777754 599999999953
No 121
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.88 E-value=1.9e-05 Score=82.28 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=24.8
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
+++|+++.|+||+|+|||||+.+++...
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHH
Confidence 6789999999999999999999887543
No 122
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.86 E-value=3.6e-05 Score=79.06 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEec
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARA 200 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 200 (352)
-|+.+-.=++|+||||+|||+|+..+|.. .+...++++... +...+
T Consensus 233 ~g~~~p~GILL~GPPGTGKT~LAraiA~e---------lg~~~~~v~~~~---------l~sk~---------------- 278 (806)
T 3cf2_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANE---------TGAFFFLINGPE---------IMSKL---------------- 278 (806)
T ss_dssp CCCCCCCEEEEECCTTSCHHHHHHHHHTT---------TTCEEEEEEHHH---------HHSSC----------------
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHH---------hCCeEEEEEhHH---------hhccc----------------
Confidence 46766677999999999999999988753 244556555421 11000
Q ss_pred CCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccc
Q 047388 201 YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQV 275 (352)
Q Consensus 201 ~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~ 275 (352)
..+....+..+........+.+|+||++-++.+..-.+.++... +.+.+++..|..+....++.||.++.-
T Consensus 279 --~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~--riv~~LL~~mdg~~~~~~V~VIaaTN~ 349 (806)
T 3cf2_A 279 --AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER--RIVSQLLTLMDGLKQRAHVIVMAATNR 349 (806)
T ss_dssp --TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHH--HHHHHHHTHHHHCCGGGCEEEEEECSS
T ss_pred --chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHH--HHHHHHHHHHhcccccCCEEEEEecCC
Confidence 01112223333344455689999999999997654333333333 345677777777767777777766543
No 123
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.86 E-value=0.00016 Score=69.37 Aligned_cols=93 Identities=18% Similarity=0.162 Sum_probs=57.0
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChh---hHHHHHHHcCCCcccccccEEEEecC
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPD---RIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~---rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
++.++.++|++|+||||++..+|..... .+.+|++++++. +.+. .+..+++..++ .++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~------~G~kVllv~~D~-~R~aa~eqL~~~~~~~gv---------pv~~~~ 162 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK------RGYKVGVVCSDT-WRPGAYHQLRQLLDRYHI---------EVFGNP 162 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEEECCC-SSTHHHHHHHHHHGGGTC---------EEECCT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH------CCCeEEEEeCCC-cchhHHHHHHHHHHhcCC---------cEEecC
Confidence 4679999999999999999999987765 678999999864 3332 23333333333 222221
Q ss_pred CHHHHHHHHHHHHHHhhcCCceEEEEcccccc
Q 047388 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIAL 233 (352)
Q Consensus 202 ~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l 233 (352)
........+......+...++++||||....+
T Consensus 163 ~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 163 QEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp TCCCHHHHHHHHHHHHHHTTCSEEEEECCCCS
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEEECCCcc
Confidence 11112222222223334456899999977543
No 124
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.83 E-value=7.6e-05 Score=72.44 Aligned_cols=118 Identities=19% Similarity=0.183 Sum_probs=64.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
-+|+| +.|+||||+|||+|+..++... +.+.++++...-... +.. .
T Consensus 47 ~~p~g--vLL~GppGtGKT~Laraia~~~---------~~~f~~is~~~~~~~----------------~~g-------~ 92 (476)
T 2ce7_A 47 RMPKG--ILLVGPPGTGKTLLARAVAGEA---------NVPFFHISGSDFVEL----------------FVG-------V 92 (476)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHH---------TCCEEEEEGGGTTTC----------------CTT-------H
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHc---------CCCeeeCCHHHHHHH----------------Hhc-------c
Confidence 34555 8899999999999999887653 234566654321100 000 0
Q ss_pred CHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCC-CcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTG-RGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 202 ~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~-~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.......++ .......+.+|+||++..+....-.+ .+...++.+.+.+++..|..+....++.||.+++...
T Consensus 93 ~~~~~r~lf----~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLF----AQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHH----HHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHH----HHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 011111222 22233578999999999885532110 0111233334556666555444456788888777654
No 125
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.82 E-value=2.7e-05 Score=66.26 Aligned_cols=138 Identities=13% Similarity=0.096 Sum_probs=76.7
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCH
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTY 203 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 203 (352)
.+|.+..++|+.|+||||.++.++.+... .+.+|+++...-.. ......+..+.|+.. ..+.+ .+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~------~g~kV~v~k~~~d~-r~~~~~i~s~~g~~~----~a~~~---~~~ 71 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKI------AKQKIQVFKPEIDN-RYSKEDVVSHMGEKE----QAVAI---KNS 71 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEEEC--------CEEECTTSCEE----ECEEE---SSS
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH------CCCEEEEEEeccCc-cchHHHHHhhcCCce----eeEee---CCH
Confidence 45889999999999999999999988765 67788888532110 000001111122211 11111 111
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCc
Q 047388 204 EHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGV 283 (352)
Q Consensus 204 ~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~ 283 (352)
. + +...+. .+.++|+||+.+.+-. +.+..|..++.. ++.||++..-+. ..+..
T Consensus 72 ~---~----i~~~~~-~~~dvViIDEaqfl~~-----------------~~v~~l~~l~~~-~~~Vi~~Gl~~d-f~~~~ 124 (191)
T 1xx6_A 72 R---E----ILKYFE-EDTEVIAIDEVQFFDD-----------------EIVEIVNKIAES-GRRVICAGLDMD-FRGKP 124 (191)
T ss_dssp T---H----HHHHCC-TTCSEEEECSGGGSCT-----------------HHHHHHHHHHHT-TCEEEEEECSBC-TTSCB
T ss_pred H---H----HHHHHh-ccCCEEEEECCCCCCH-----------------HHHHHHHHHHhC-CCEEEEEecccc-cccCc
Confidence 1 2 212222 2479999999876411 224456666665 999999865443 22332
Q ss_pred ccCCCCCCCcchhhhhccceEEEEEe
Q 047388 284 FISDPKKPAGGHVLAHAVTIRLMFRK 309 (352)
Q Consensus 284 ~~~~~~~~~gg~~~~~~~~~~i~L~~ 309 (352)
|. +...+-..+|.+..+..
T Consensus 125 F~-------~~~~L~~~AD~V~el~~ 143 (191)
T 1xx6_A 125 FG-------PIPELMAIAEFVDKIQA 143 (191)
T ss_dssp CT-------THHHHHHHCSEEEECCE
T ss_pred Cc-------cHHHHHHHcccEEeeee
Confidence 31 23445567777666653
No 126
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.82 E-value=4.2e-05 Score=70.02 Aligned_cols=42 Identities=17% Similarity=0.056 Sum_probs=35.5
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
..+|+++.|+|++|+||||++..+|..... .+++|++++.+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~------~g~kV~lv~~D~ 142 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVD------EGKSVVLAAADT 142 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHH------TTCCEEEEEECT
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHh------cCCEEEEEcccc
Confidence 357899999999999999999999887654 567899988763
No 127
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.81 E-value=2.1e-05 Score=85.40 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=29.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
-+++|+++.|+|++|||||||+..++. ..+ ...+.++++..
T Consensus 412 ~i~~G~~~~ivG~sGsGKSTl~~ll~g--~~~-----~~~G~i~i~g~ 452 (1284)
T 3g5u_A 412 KVKSGQTVALVGNSGCGKSTTVQLMQR--LYD-----PLDGMVSIDGQ 452 (1284)
T ss_dssp EECTTCEEEEECCSSSSHHHHHHHTTT--SSC-----CSEEEEEETTE
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC--CCC-----CCCeEEEECCE
Confidence 478999999999999999999985543 332 23345566553
No 128
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.80 E-value=3.4e-05 Score=66.52 Aligned_cols=138 Identities=12% Similarity=0.067 Sum_probs=77.1
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCH
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTY 203 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 203 (352)
.+|.+..++|+.|+||||.+++++.+... .+.+|+++...-+.. .-...++.+.|.... .+ ...+.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~------~g~kVli~k~~~d~R-~ge~~i~s~~g~~~~----a~---~~~~~ 91 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQF------AKQHAIVFKPCIDNR-YSEEDVVSHNGLKVK----AV---PVSAS 91 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHH------TTCCEEEEECC------------------CC----EE---ECSSG
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH------CCCEEEEEEeccCCc-chHHHHHhhcCCeeE----Ee---ecCCH
Confidence 56899999999999999999999998876 678899986442211 111234444444321 11 11111
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCc
Q 047388 204 EHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGV 283 (352)
Q Consensus 204 ~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~ 283 (352)
. .+...+. .++++|+||+.+.+-. +.+..|..++.+ ++.||++..-+. ..+..
T Consensus 92 ~-------~~~~~~~-~~~dvViIDEaQF~~~-----------------~~V~~l~~l~~~-~~~Vi~~Gl~~D-F~~~~ 144 (214)
T 2j9r_A 92 K-------DIFKHIT-EEMDVIAIDEVQFFDG-----------------DIVEVVQVLANR-GYRVIVAGLDQD-FRGLP 144 (214)
T ss_dssp G-------GGGGGCC-SSCCEEEECCGGGSCT-----------------THHHHHHHHHHT-TCEEEEEECSBC-TTSCB
T ss_pred H-------HHHHHHh-cCCCEEEEECcccCCH-----------------HHHHHHHHHhhC-CCEEEEEecccc-cccCc
Confidence 1 1111111 2589999999987511 122445666654 999998876554 23333
Q ss_pred ccCCCCCCCcchhhhhccceEEEEEe
Q 047388 284 FISDPKKPAGGHVLAHAVTIRLMFRK 309 (352)
Q Consensus 284 ~~~~~~~~~gg~~~~~~~~~~i~L~~ 309 (352)
|. +...+-..+|.+..|..
T Consensus 145 F~-------~~~~Ll~~AD~Vtel~a 163 (214)
T 2j9r_A 145 FG-------QVPQLMAIAEHVTKLQA 163 (214)
T ss_dssp CT-------THHHHHHHCSEEEECCC
T ss_pred cc-------cHHHHHHhcccEEeeee
Confidence 32 23345567787777664
No 129
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.79 E-value=4e-05 Score=70.65 Aligned_cols=116 Identities=18% Similarity=0.220 Sum_probs=61.2
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEec
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARA 200 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 200 (352)
++..+..-++|+||||+|||+++..++... +...++++... +...+ .
T Consensus 46 ~~~~~~~~vLl~GppGtGKT~la~aia~~~---------~~~~~~v~~~~---------l~~~~---~------------ 92 (322)
T 3eie_A 46 GNRKPTSGILLYGPPGTGKSYLAKAVATEA---------NSTFFSVSSSD---------LVSKW---M------------ 92 (322)
T ss_dssp TTCCCCCEEEEECSSSSCHHHHHHHHHHHH---------TCEEEEEEHHH---------HHTTT---G------------
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHH---------CCCEEEEchHH---------Hhhcc---c------------
Confidence 444556679999999999999999887653 34566664421 10000 0
Q ss_pred CCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHH-HhCcEEEEEcc
Q 047388 201 YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISE-EFNVAVYMTNQ 274 (352)
Q Consensus 201 ~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~-~~~~~viv~~h 274 (352)
......+..+........+.+|+||++..+......+..+...+ ....++..|..+.. ..++.||.+++
T Consensus 93 ---g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~--~~~~ll~~l~~~~~~~~~v~vi~atn 162 (322)
T 3eie_A 93 ---GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRR--IKTELLVQMNGVGNDSQGVLVLGATN 162 (322)
T ss_dssp ---GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHH--HHHHHHHHHGGGGTSCCCEEEEEEES
T ss_pred ---chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHH--HHHHHHHHhccccccCCceEEEEecC
Confidence 01112223333344455789999999998865321111111222 23455555554432 23455554544
No 130
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.79 E-value=0.00011 Score=66.48 Aligned_cols=76 Identities=18% Similarity=0.107 Sum_probs=46.8
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYE 204 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~ 204 (352)
++..+.|+||||+|||+++..++... +...++++...-+... .....
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~~~l~~~~------------------------~~~~~ 99 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC---------SATFLNISAASLTSKY------------------------VGDGE 99 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT---------TCEEEEEESTTTSSSS------------------------CSCHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh---------CCCeEEeeHHHHhhcc------------------------cchHH
Confidence 46678999999999999999887653 3456666654321100 00111
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcccccchhc
Q 047388 205 HQYNLLLGLAAKMSEEPFRLLIVDSVIALFRV 236 (352)
Q Consensus 205 ~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~ 236 (352)
.. +..+........+.+|+||++..+...
T Consensus 100 ~~---~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 100 KL---VRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp HH---HHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred HH---HHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 11 122222333457899999999988653
No 131
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.78 E-value=3.7e-05 Score=65.29 Aligned_cols=134 Identities=12% Similarity=-0.006 Sum_probs=77.6
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYE 204 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~ 204 (352)
.|.+..|+|+.|+|||+.+++.+.+... .+.+|+|+..+-+.... ..+..+.|... +-+ ...+..
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~------~~~kvl~~kp~~D~R~~--~~i~S~~g~~~----~A~---~~~~~~ 83 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQI------AQYKCLVIKYAKDTRYS--SSFCTHDRNTM----EAL---PACLLR 83 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH------TTCCEEEEEETTCCCGG--GSCCHHHHHHS----EEE---EESSGG
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH------cCCeEEEEccccCccch--hhhhhccCCcc----cce---ecCCHH
Confidence 5899999999999999888888888776 57899999866331110 00111112111 111 112222
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcc
Q 047388 205 HQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVF 284 (352)
Q Consensus 205 ~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~ 284 (352)
+..+ . . .++++|+||+.+.+ . + + .+++ ..++ +.|+.||+...-+. ..+..|
T Consensus 84 d~~~---~----~--~~~DvIlIDEaQFf-k-~------~-------ve~~---~~L~-~~gk~VI~~GL~~D-F~~~~F 134 (195)
T 1w4r_A 84 DVAQ---E----A--LGVAVIGIDEGQFF-P-D------I-------VEFC---EAMA-NAGKTVIVAALDGT-FQRKPF 134 (195)
T ss_dssp GGHH---H----H--HTCSEEEESSGGGC-T-T------H-------HHHH---HHHH-HTTCEEEEEEESBC-TTSSBC
T ss_pred HHHH---h----c--cCCCEEEEEchhhh-H-H------H-------HHHH---HHHH-HCCCeEEEEecccc-cccccc
Confidence 2111 1 1 24799999999987 2 1 1 1333 5555 67999998876554 233333
Q ss_pred cCCCCCCCcchhhhhccceEEEEEe
Q 047388 285 ISDPKKPAGGHVLAHAVTIRLMFRK 309 (352)
Q Consensus 285 ~~~~~~~~gg~~~~~~~~~~i~L~~ 309 (352)
. +...+-..+|.+..|..
T Consensus 135 ~-------~~~~Ll~~Ad~v~kl~a 152 (195)
T 1w4r_A 135 G-------AILNLVPLAESVVKLTA 152 (195)
T ss_dssp T-------TGGGGGGGCSEEEECCE
T ss_pred h-------hHHHHHHhcCeEEEeee
Confidence 2 12344556777766654
No 132
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.78 E-value=8.2e-05 Score=65.89 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=29.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
|++...-+.|+||||+|||+++..++... +.+.++++...
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~---------~~~~~~~~~~~ 74 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEA---------QVPFLAMAGAE 74 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHH---------TCCEEEEETTT
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---------CCCEEEechHH
Confidence 45556678999999999999999887653 33567776653
No 133
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.78 E-value=2.9e-05 Score=72.56 Aligned_cols=129 Identities=12% Similarity=0.109 Sum_probs=66.2
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChh-hHHHHHHHcCCCcccccccEEEEecCC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPD-RIVPIAERFGMDPGAVLDNIIYARAYT 202 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~-rl~~~~~~~~~~~~~~~~~i~~~~~~~ 202 (352)
..+..+.|+|++|+|||+|+..++...... .+ .+..++|++........ .+..++..++..... ...+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~--~~-~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~--------~~~~ 111 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK--FL-GKFKHVYINTRQIDTPYRVLADLLESLDVKVPF--------TGLS 111 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH--TC-SSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCS--------SSCC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH--hc-CCceEEEEECCCCCCHHHHHHHHHHHhCCCCCC--------CCCC
Confidence 356789999999999999999887654321 00 05678888854322222 123333333322100 1112
Q ss_pred HHHHHHHHHHHHHHhhcC-CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 203 YEHQYNLLLGLAAKMSEE-PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 203 ~~~~~~~l~~l~~~l~~~-~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.... +..+...+... .+.+||||++..+..... . ..+..+++.+..+ ...++.+|++++..
T Consensus 112 ~~~~---~~~l~~~l~~~~~~~vlilDE~~~l~~~~~--~-------~~l~~l~~~~~~~-~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 112 IAEL---YRRLVKAVRDYGSQVVIVLDEIDAFVKKYN--D-------DILYKLSRINSEV-NKSKISFIGITNDV 173 (386)
T ss_dssp HHHH---HHHHHHHHHTCCSCEEEEEETHHHHHHSSC--S-------THHHHHHHHHHSC-CC--EEEEEEESCG
T ss_pred HHHH---HHHHHHHHhccCCeEEEEEcChhhhhccCc--C-------HHHHHHhhchhhc-CCCeEEEEEEECCC
Confidence 2222 23333334333 478999999988753210 0 1112332222211 34477888877644
No 134
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.77 E-value=6.4e-05 Score=68.59 Aligned_cols=119 Identities=18% Similarity=0.208 Sum_probs=65.7
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEec
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARA 200 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 200 (352)
-|++++..+.|+||||+|||+++..++... +.+.++++.. . +. ..-+|...
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---------~~~~i~v~~~-----~-l~--~~~~g~~~------------ 94 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISIKGP-----E-LL--TMWFGESE------------ 94 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT---------TCEEEEECHH-----H-HH--HHHHTTCT------------
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh---------CCCEEEEEhH-----H-HH--hhhcCchH------------
Confidence 367889999999999999999999887653 3455555431 1 11 11122111
Q ss_pred CCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCC---CcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 201 YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTG---RGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 201 ~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~---~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.....++. ......+.+++||++..+....... .+....+ .+..++..|..+....++.||.+++...
T Consensus 95 ---~~~~~~f~----~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~--~~~~lL~~l~~~~~~~~v~vi~atn~~~ 165 (301)
T 3cf0_A 95 ---ANVREIFD----KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADR--VINQILTEMDGMSTKKNVFIIGATNRPD 165 (301)
T ss_dssp ---THHHHHHH----HHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCH--HHHHHHHHHHSSCTTSSEEEEEEESCGG
T ss_pred ---HHHHHHHH----HHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHH--HHHHHHHHhhcccCCCCEEEEEecCCcc
Confidence 11112222 2233468999999999886532110 0111111 2345555555444445677777766543
No 135
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.74 E-value=2.7e-05 Score=70.87 Aligned_cols=82 Identities=10% Similarity=-0.017 Sum_probs=46.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
|.++...+.|+||||+|||+++..+|... +.++++++... +. +. ++. .
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l---------~~~~i~v~~~~---------l~-----------~~-~~g--~ 79 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKM---------GINPIMMSAGE---------LE-----------SG-NAG--E 79 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHH---------TCCCEEEEHHH---------HH-----------CC------H
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh---------CCCEEEEeHHH---------hh-----------hc-cCc--h
Confidence 55556678999999999999999988764 33466665321 00 00 000 0
Q ss_pred CHHHHHHHHHHHHHHhhcCCceEEEEcccccchh
Q 047388 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFR 235 (352)
Q Consensus 202 ~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~ 235 (352)
........+...........+.+|+||.+-.+..
T Consensus 80 ~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 80 PAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred hHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 0111222333333333456789999999988765
No 136
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.72 E-value=0.00011 Score=68.05 Aligned_cols=149 Identities=9% Similarity=0.026 Sum_probs=77.9
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYT 202 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 202 (352)
+++|+++.|+|++|||||||+..++.. .+ ...+.+.++....+. .. ...+.+.+... .
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~--~~-----~~~g~i~i~~~~e~~------------~~--~~~~~i~~~~g-g 225 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEF--IP-----KEERIISIEDTEEIV------------FK--HHKNYTQLFFG-G 225 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGG--SC-----TTSCEEEEESSCCCC------------CS--SCSSEEEEECB-T
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCC--Cc-----CCCcEEEECCeeccc------------cc--cchhEEEEEeC-C
Confidence 457999999999999999999866533 22 234455665432211 10 01123333311 1
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCC
Q 047388 203 YEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGG 282 (352)
Q Consensus 203 ~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~ 282 (352)
...+... +...+ ..+|+++++|+++.. ++...|+.+.. -+.++|+++|-.......
T Consensus 226 g~~~r~~---la~aL-~~~p~ilildE~~~~-------------------e~~~~l~~~~~-g~~tvi~t~H~~~~~~~~ 281 (330)
T 2pt7_A 226 NITSADC---LKSCL-RMRPDRIILGELRSS-------------------EAYDFYNVLCS-GHKGTLTTLHAGSSEEAF 281 (330)
T ss_dssp TBCHHHH---HHHHT-TSCCSEEEECCCCST-------------------HHHHHHHHHHT-TCCCEEEEEECSSHHHHH
T ss_pred ChhHHHH---HHHHh-hhCCCEEEEcCCChH-------------------HHHHHHHHHhc-CCCEEEEEEcccHHHHHh
Confidence 1122222 22233 247999999998751 12334555443 345788888865421100
Q ss_pred -----cccCCCC---CC--CcchhhhhccceEEEEEeecCCeEEEEEE
Q 047388 283 -----VFISDPK---KP--AGGHVLAHAVTIRLMFRKGKGEQRVCKVF 320 (352)
Q Consensus 283 -----~~~~~~~---~~--~gg~~~~~~~~~~i~L~~~~~~~R~~~i~ 320 (352)
+..+.+. .+ ..-..+....|.++.+.+ | .|+..|+
T Consensus 282 dri~~l~~g~~~~~~~~~~~i~~~i~~~id~vv~~~~--g-R~v~ei~ 326 (330)
T 2pt7_A 282 IRLANMSSSNSAARNIKFESLIEGFKDLIDMIVHINH--H-KQCDEFY 326 (330)
T ss_dssp HHHHHHHHTSGGGTTSCHHHHHHHHHTTCCEEEEECT--T-SCEEEEE
T ss_pred hhheehhcCCcccCCCCHHHHHHHHHHhCCEEEEEeC--C-cEEEEEE
Confidence 1111100 00 112356778899999987 4 4444443
No 137
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.72 E-value=0.00016 Score=61.44 Aligned_cols=130 Identities=12% Similarity=0.117 Sum_probs=75.0
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC-CChhhHHHHHHHcCCCcccccccEEEEecCCH-
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT-FRPDRIVPIAERFGMDPGAVLDNIIYARAYTY- 203 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~-~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~- 203 (352)
...+.+++++|.||||.+.-++..++- .+.+|+++.+-.. .... -..+++++++.....-..+.. +..+.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g------~G~rV~~vQF~Kg~~~~g-E~~~l~~L~v~~~~~g~gf~~-~~~~~~ 99 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG------HGKNVGVVQFIKGTWPNG-ERNLLEPHGVEFQVMATGFTW-ETQNRE 99 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH------TTCCEEEEESSCCSSCCH-HHHHHGGGTCEEEECCTTCCC-CGGGHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEEeeCCCCCcc-HHHHHHhCCcEEEEccccccc-CCCCcH
Confidence 347778888899999999999988775 7899999965432 1211 223444454222111111111 11111
Q ss_pred ---HHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccc
Q 047388 204 ---EHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQV 275 (352)
Q Consensus 204 ---~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~ 275 (352)
......+..+.+.+....+++||+|++.......+-+ ..+++..|.+ +-.+..||+|...
T Consensus 100 ~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~----------~~ev~~~l~~--Rp~~~~vIlTGr~ 162 (196)
T 1g5t_A 100 ADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLP----------LEEVISALNA--RPGHQTVIITGRG 162 (196)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSC----------HHHHHHHHHT--SCTTCEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCC----------HHHHHHHHHh--CcCCCEEEEECCC
Confidence 1122334455666666789999999998765543321 1255555542 2346788887543
No 138
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.72 E-value=0.00055 Score=62.29 Aligned_cols=42 Identities=26% Similarity=0.333 Sum_probs=34.6
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
.+|.++.|+|++|+||||++..++...... .+.+|++++.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~-----~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE-----KHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT-----TCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh-----cCCEEEEEecCc
Confidence 368899999999999999999998776531 356899998764
No 139
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.72 E-value=0.00034 Score=66.54 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=41.1
Q ss_pred eEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhhccc
Q 047388 223 RLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVT 302 (352)
Q Consensus 223 ~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 302 (352)
+++++|++++.+.. .. ...+...|++++ + +.+||+++|-.. +...+|
T Consensus 317 ~~LlLDEpt~~LD~--------~~----~~~l~~~L~~l~-~-~~~vi~itH~~~-------------------~~~~~d 363 (415)
T 4aby_A 317 PSVVFDEVDAGIGG--------AA----AIAVAEQLSRLA-D-TRQVLVVTHLAQ-------------------IAARAH 363 (415)
T ss_dssp SEEEESSTTTTCCH--------HH----HHHHHHHHHHHT-T-TSEEEEECSCHH-------------------HHTTCS
T ss_pred CEEEEECCCCCCCH--------HH----HHHHHHHHHHHh-C-CCEEEEEeCcHH-------------------HHhhcC
Confidence 99999999877532 11 236777777776 2 899999999642 123578
Q ss_pred eEEEEEeecCCeEEE
Q 047388 303 IRLMFRKGKGEQRVC 317 (352)
Q Consensus 303 ~~i~L~~~~~~~R~~ 317 (352)
.++.+.+.....|+.
T Consensus 364 ~i~~l~k~~~~G~~~ 378 (415)
T 4aby_A 364 HHYKVEKQVEDGRTV 378 (415)
T ss_dssp EEEEEEEEEETTEEE
T ss_pred eEEEEEEeccCCceE
Confidence 888887653333343
No 140
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.71 E-value=2.1e-05 Score=85.36 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=23.4
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
-+++|+++.|+|++|||||||+..++
T Consensus 1055 ~i~~Ge~v~ivG~sGsGKSTl~~~l~ 1080 (1284)
T 3g5u_A 1055 EVKKGQTLALVGSSGCGKSTVVQLLE 1080 (1284)
T ss_dssp EECSSSEEEEECSSSTTHHHHHHHHT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999999999654
No 141
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.71 E-value=0.00014 Score=66.99 Aligned_cols=42 Identities=17% Similarity=-0.030 Sum_probs=36.3
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
..+|.++.|+|++|+||||++..+|..... .+++|++++...
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~------~g~kVllid~D~ 143 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAE------LGYKVLIAAADT 143 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHH------TTCCEEEEECCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEeCCC
Confidence 467899999999999999999999887665 578999998864
No 142
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.70 E-value=9e-05 Score=65.72 Aligned_cols=32 Identities=22% Similarity=0.124 Sum_probs=24.9
Q ss_pred EEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 129 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
+.|+||||+|||+++..++... +.+.++++..
T Consensus 48 vll~G~~GtGKT~la~~la~~~---------~~~~~~i~~~ 79 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEA---------KVPFFTISGS 79 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH---------TCCEEEECSC
T ss_pred EEEECcCCCCHHHHHHHHHHHc---------CCCEEEEeHH
Confidence 8899999999999999887653 2346666654
No 143
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.70 E-value=0.00015 Score=67.77 Aligned_cols=100 Identities=18% Similarity=0.164 Sum_probs=58.0
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChh-hHHHHHHHcCCCcccccccEEEEecCC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPD-RIVPIAERFGMDPGAVLDNIIYARAYT 202 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~-rl~~~~~~~~~~~~~~~~~i~~~~~~~ 202 (352)
..+..+.|+||||+|||+++..++..........+.+..++|++.....++. -+..++..++..... ...+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~--------~~~~ 113 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPF--------TGLS 113 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCS--------SCCC
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCC--------CCCC
Confidence 3456899999999999999998876653210000125678899876543332 244555555542200 0111
Q ss_pred HHHHHHHHHHHHHHhhcC-CceEEEEcccccch
Q 047388 203 YEHQYNLLLGLAAKMSEE-PFRLLIVDSVIALF 234 (352)
Q Consensus 203 ~~~~~~~l~~l~~~l~~~-~~~lvvIDsl~~l~ 234 (352)
... .+..+...+... ++.+|+||++..+.
T Consensus 114 ~~~---~~~~l~~~l~~~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 114 VGE---VYERLVKRLSRLRGIYIIVLDEIDFLP 143 (387)
T ss_dssp HHH---HHHHHHHHHTTSCSEEEEEEETTTHHH
T ss_pred HHH---HHHHHHHHHhccCCeEEEEEccHhhhc
Confidence 222 223333344333 47799999998874
No 144
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.69 E-value=0.0004 Score=65.63 Aligned_cols=114 Identities=19% Similarity=0.146 Sum_probs=59.0
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCH
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTY 203 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 203 (352)
.++.-++|+||||+|||+++..++.. .+..+++++...-.... .+ . .
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~---------~~~~~~~v~~~~l~~~~--------~g---------------~-~ 192 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAE---------SNATFFNISAASLTSKY--------VG---------------E-G 192 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHH---------TTCEEEEECSCCC-------------------------------C
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh---------hcCcEEEeeHHHhhccc--------cc---------------h-H
Confidence 34678999999999999999988765 34567777765421110 00 0 0
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHH--hCcEEEEEccc
Q 047388 204 EHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEE--FNVAVYMTNQV 275 (352)
Q Consensus 204 ~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~--~~~~viv~~h~ 275 (352)
. ..+..+........+.+|+||++..++.....+...... ..+..++..|..+... .++.||.+++.
T Consensus 193 ~---~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~--~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 193 E---KLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASR--RLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp H---HHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHH--HHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred H---HHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHH--HHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 1 112222233344577899999999886532211112222 2234555555544332 34555555443
No 145
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.68 E-value=6e-05 Score=78.80 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=24.5
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
+.+|+++.|+||+|+|||||+.+++...
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ial~~ 686 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTGVIV 686 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999999886543
No 146
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.68 E-value=9.2e-05 Score=69.24 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=24.3
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
++..+..-++|+||||+|||+++..++...
T Consensus 79 ~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 79 GNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp SSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 445555668999999999999999888764
No 147
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.65 E-value=0.00013 Score=66.33 Aligned_cols=40 Identities=18% Similarity=0.103 Sum_probs=35.0
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
+|+++.++|++|+||||++..+|..... .+++|++++...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~------~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG------KGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH------TTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEecCCc
Confidence 6899999999999999999999887665 578899998864
No 148
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.65 E-value=0.0016 Score=63.45 Aligned_cols=51 Identities=22% Similarity=0.126 Sum_probs=37.7
Q ss_pred hhHHhhcC---CC----CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 114 ALDELLGG---GI----ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 114 ~LD~~L~G---Gl----~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
+|.+++++ ++ .+..++.|+|++|+||||++..++..... .+.+|+.++.+.
T Consensus 82 eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~------~G~kVllVd~D~ 139 (504)
T 2j37_W 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQR------KGWKTCLICADT 139 (504)
T ss_dssp HHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEEECC
T ss_pred HHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEeccc
Confidence 45566654 23 23458999999999999999999987664 567899998753
No 149
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.65 E-value=0.00064 Score=59.07 Aligned_cols=41 Identities=15% Similarity=-0.096 Sum_probs=33.6
Q ss_pred CCcE-EEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC
Q 047388 125 TGAI-TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 125 ~G~i-~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~ 171 (352)
+|.+ +.+.|++|+||||++.+++..... .+.+|++++.+..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~------~G~~V~v~d~D~q 45 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLR------QGVRVMAGVVETH 45 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHH------TTCCEEEEECCCT
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHH------CCCCEEEEEeCCC
Confidence 4555 788999999999999999988776 5778988888753
No 150
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.64 E-value=0.00016 Score=67.69 Aligned_cols=114 Identities=14% Similarity=0.191 Sum_probs=69.5
Q ss_pred cccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcC
Q 047388 106 IKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFG 185 (352)
Q Consensus 106 ~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~ 185 (352)
..+.||+..+|-++ -+.+|+.+.|+|++|+|||+|+..++..+... +.+-.|+|...... .+.+..+.+.+.
T Consensus 156 ~~~~tGiraID~~~--pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~----~~~v~~I~~lIGER--~~Ev~~~~~~~~ 227 (422)
T 3ice_A 156 STEDLTARVLDLAS--PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN----HPDCVLMVLLIDER--PEEVTEMQRLVK 227 (422)
T ss_dssp CTTHHHHHHHHHHS--CCBTTCEEEEECCSSSSHHHHHHHHHHHHHHH----CTTSEEEEEEESSC--HHHHHHHHTTCS
T ss_pred Ccccccceeeeeee--eecCCcEEEEecCCCCChhHHHHHHHHHHhhc----CCCeeEEEEEecCC--hHHHHHHHHHhC
Confidence 46889999999877 58899999999999999999999888765431 12345777654432 455555544331
Q ss_pred CCcccccccEEEEecCC-HHH-HHH---HHHHHHHHhhcCCce-EEEEcccccchh
Q 047388 186 MDPGAVLDNIIYARAYT-YEH-QYN---LLLGLAAKMSEEPFR-LLIVDSVIALFR 235 (352)
Q Consensus 186 ~~~~~~~~~i~~~~~~~-~~~-~~~---~l~~l~~~l~~~~~~-lvvIDsl~~l~~ 235 (352)
.+.+....+ +.. ... ....+.+.+...+-+ +|++||++.+..
T Consensus 228 --------~~vV~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A~ 275 (422)
T 3ice_A 228 --------GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 275 (422)
T ss_dssp --------SEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHHH
T ss_pred --------eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHHH
Confidence 233333222 211 111 111222333344444 567799998754
No 151
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.63 E-value=0.00012 Score=71.50 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=66.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
|.++..-++|+||||+|||+++..++.. .+...++++... +...+ .
T Consensus 234 g~~~~~~vLL~GppGtGKT~lAraia~~---------~~~~fv~vn~~~---------l~~~~--~-------------- 279 (489)
T 3hu3_A 234 GVKPPRGILLYGPPGTGKTLIARAVANE---------TGAFFFLINGPE---------IMSKL--A-------------- 279 (489)
T ss_dssp TCCCCCEEEEECSTTSSHHHHHHHHHHH---------CSSEEEEEEHHH---------HHTSC--T--------------
T ss_pred CCCCCCcEEEECcCCCCHHHHHHHHHHH---------hCCCEEEEEchH---------hhhhh--c--------------
Confidence 4566677999999999999999988654 245677776421 11000 0
Q ss_pred CHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 202 ~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.+....+..+........+.+|+||++..+........+++.. ..+..+++.|..+....++.||.+++..
T Consensus 280 --g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~--~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 280 --GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER--RIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp --THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHH--HHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred --chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHH--HHHHHHHHHhhccccCCceEEEEecCCc
Confidence 0111111222222334567899999998886543222233332 2344666666554444566666665543
No 152
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.61 E-value=9.5e-05 Score=63.70 Aligned_cols=154 Identities=14% Similarity=-0.003 Sum_probs=79.3
Q ss_pred ccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCc
Q 047388 109 TTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDP 188 (352)
Q Consensus 109 ~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~ 188 (352)
++|.-.--.++.+--..|.+..|+|+-|+||||.++..+.+... .+.+++.+...-+- ..-...+..+.|...
T Consensus 11 ~~~~~~~~~~m~~~~~~G~I~vitG~M~sGKTT~Llr~~~r~~~------~g~kvli~kp~~D~-R~~~~~I~Sr~G~~~ 83 (219)
T 3e2i_A 11 SSGLVPRGSHMYETYHSGWIECITGSMFSGKSEELIRRLRRGIY------AKQKVVVFKPAIDD-RYHKEKVVSHNGNAI 83 (219)
T ss_dssp ----------------CCEEEEEEECTTSCHHHHHHHHHHHHHH------TTCCEEEEEEC------------CBTTBCC
T ss_pred ccCcccCCceEeeccCCceEEEEECCCCCCHHHHHHHHHHHHHH------cCCceEEEEeccCC-cchhhhHHHhcCCce
Confidence 34443333444444467899999999999999988877777665 56778887654321 111223444455433
Q ss_pred ccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcE
Q 047388 189 GAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVA 268 (352)
Q Consensus 189 ~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~ 268 (352)
+ -+.+ .+..++.+ .+ ..++++|+||+.+.+-. .++..|..++ ..|+.
T Consensus 84 ~----a~~v---~~~~di~~-------~i-~~~~dvV~IDEaQFf~~-----------------~~v~~l~~la-~~gi~ 130 (219)
T 3e2i_A 84 E----AINI---SKASEIMT-------HD-LTNVDVIGIDEVQFFDD-----------------EIVSIVEKLS-ADGHR 130 (219)
T ss_dssp E----EEEE---SSGGGGGG-------SC-CTTCSEEEECCGGGSCT-----------------HHHHHHHHHH-HTTCE
T ss_pred e----eEEe---CCHHHHHH-------HH-hcCCCEEEEechhcCCH-----------------HHHHHHHHHH-HCCCE
Confidence 1 1111 11111111 11 23688999999987621 3455677777 58999
Q ss_pred EEEEcccccCCCCCcccCCCCCCCcchhhhhccceEEEEEee
Q 047388 269 VYMTNQVIADPGGGVFISDPKKPAGGHVLAHAVTIRLMFRKG 310 (352)
Q Consensus 269 viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~i~L~~~ 310 (352)
||+..--+ ...+..|. +...+-..+|.+..|..-
T Consensus 131 Vi~~GLd~-DF~~~~F~-------~~~~Ll~~Ad~v~kl~ai 164 (219)
T 3e2i_A 131 VIVAGLDM-DFRGEPFE-------PMPKLMAVSEQVTKLQAV 164 (219)
T ss_dssp EEEEEESB-CTTSCBCT-------THHHHHHHCSEEEEECEE
T ss_pred EEEeeccc-ccccCCCc-------cHHHHHHhcceEEEeeeE
Confidence 88865433 23333331 234556677887777643
No 153
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.61 E-value=4e-05 Score=64.61 Aligned_cols=39 Identities=21% Similarity=0.116 Sum_probs=30.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
++++|+++.|.|+|||||||++..++.. . +.+.++++++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~-------~~g~i~i~~d 43 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--P-------GVPKVHFHSD 43 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--S-------SSCEEEECTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--c-------CCCeEEEccc
Confidence 5789999999999999999999977643 1 2345677654
No 154
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.59 E-value=0.00039 Score=60.54 Aligned_cols=134 Identities=10% Similarity=-0.041 Sum_probs=75.2
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYE 204 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~ 204 (352)
.|.+..++|+.|+||||.+++.+.+... .+.+|+++...-+... - ..+..+.|.... .+.+ .+..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~------~g~kvli~kp~~D~Ry-g-~~i~sr~G~~~~----a~~i---~~~~ 82 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI------AQYKCLVIKYAKDTRY-S-SSFCTHDRNTME----ALPA---CLLR 82 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT------TTCCEEEEEETTCCCC-------------CE----EEEE---SSGG
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH------CCCeEEEEeecCCccc-h-HHHHhhcCCeeE----EEec---CCHH
Confidence 5899999999999999999999988776 6788998874433221 1 334555554431 1111 1222
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcc
Q 047388 205 HQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVF 284 (352)
Q Consensus 205 ~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~ 284 (352)
+ ++.. + .++++|+||+.+.+. + +.++++.+ .+.|+.||++..-+. ..+..|
T Consensus 83 d---i~~~----~--~~~dvViIDEaQF~~--------~-------v~el~~~l----~~~gi~VI~~GL~~D-F~~~~F 133 (234)
T 2orv_A 83 D---VAQE----A--LGVAVIGIDEGQFFP--------D-------IVEFCEAM----ANAGKTVIVAALDGT-FQRKPF 133 (234)
T ss_dssp G---GHHH----H--TTCSEEEESSGGGCT--------T-------HHHHHHHH----HHTTCEEEEECCSBC-TTSSBC
T ss_pred H---HHHH----h--ccCCEEEEEchhhhh--------h-------HHHHHHHH----HhCCCEEEEEecccc-cccCCc
Confidence 1 1221 1 358999999998762 0 12444333 347999999876554 233333
Q ss_pred cCCCCCCCcchhhhhccceEEEEEe
Q 047388 285 ISDPKKPAGGHVLAHAVTIRLMFRK 309 (352)
Q Consensus 285 ~~~~~~~~gg~~~~~~~~~~i~L~~ 309 (352)
. +...+-..+|.+..|..
T Consensus 134 ~-------~~~~Ll~~AD~Vtelka 151 (234)
T 2orv_A 134 G-------AILNLVPLAESVVKLTA 151 (234)
T ss_dssp T-------TGGGGGGGCSEEEECCE
T ss_pred c-------cHHHHHHhcccEEeeee
Confidence 2 12334456666666653
No 155
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.59 E-value=0.00017 Score=75.36 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=23.5
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
+++|+++.|.|++|+|||||+..++.
T Consensus 696 I~~GeivaIiGpNGSGKSTLLklLaG 721 (986)
T 2iw3_A 696 CSLSSRIAVIGPNGAGKSTLINVLTG 721 (986)
T ss_dssp EETTCEEEECSCCCHHHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999996653
No 156
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.59 E-value=0.00012 Score=75.82 Aligned_cols=117 Identities=14% Similarity=0.131 Sum_probs=65.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
|++++..++|+||||||||+|+..++.. .+...++++....+ +...
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~---------l~~~~i~v~~~~l~------------~~~~------------- 279 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANE---------TGAFFFLINGPEIM------------SKLA------------- 279 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHT---------TTCEEEEEEHHHHS------------SSST-------------
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHH---------cCCcEEEEEchHhh------------hhhh-------------
Confidence 7899999999999999999999987653 23345555532110 0000
Q ss_pred CHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccc
Q 047388 202 TYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVI 276 (352)
Q Consensus 202 ~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~ 276 (352)
.+....+..+.+......+.++++|.+..+........++... +....++..+..+....++.+|.+++-.
T Consensus 280 --g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~--~~~~~Ll~ll~g~~~~~~v~vI~atn~~ 350 (806)
T 1ypw_A 280 --GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER--RIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (806)
T ss_dssp --THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHH--HHHHHHHHHHHSSCTTSCCEEEEECSCT
T ss_pred --hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHH--HHHHHHHHHhhhhcccccEEEecccCCc
Confidence 0111111222222223367899999998886542222222322 2234455555444445567777776654
No 157
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.57 E-value=5.1e-05 Score=71.23 Aligned_cols=152 Identities=15% Similarity=0.093 Sum_probs=73.4
Q ss_pred hcCCCCC--CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEe----C-CCCCChhh---HHHHHHHcCCCc
Q 047388 119 LGGGIET--GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYID----T-EGTFRPDR---IVPIAERFGMDP 188 (352)
Q Consensus 119 L~GGl~~--G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~----~-e~~~~~~r---l~~~~~~~~~~~ 188 (352)
+.--+++ |+.+.|.|++|||||||+..++..... ..+...+.+ |+. . +..+.... +....+......
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i-~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~ 237 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGRE-FVFEKLGGDEQAMQYSDYPQMALGHQRYIDYA 237 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHH-HHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHH-HHHhhcCCCcccCChhHHHHHHHHHHHHHHHH
Confidence 4445677 999999999999999999987765332 211011222 221 1 11111221 222222211111
Q ss_pred ccccccEEEEecCCHHHHH-HHH------HHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHH
Q 047388 189 GAVLDNIIYARAYTYEHQY-NLL------LGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKI 261 (352)
Q Consensus 189 ~~~~~~i~~~~~~~~~~~~-~~l------~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~l 261 (352)
.++.+|+.+.......... ... ..+.......+++++++|.....+..+. .+.+++++++ ..+.+.|+++
T Consensus 238 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g-~~~sld~~~r--~~l~~~l~~l 314 (365)
T 1lw7_A 238 VRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDG-LRSLGSQKQR--QQFQQLLKKL 314 (365)
T ss_dssp HHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC------------CCSH--HHHHHHHHHH
T ss_pred HhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCC-CcCCccHHHH--HHHHHHHHHH
Confidence 2345677665432111111 110 0112222235789999985321111000 0001122222 2677888888
Q ss_pred HHHhCcEEEEEcccc
Q 047388 262 SEEFNVAVYMTNQVI 276 (352)
Q Consensus 262 a~~~~~~viv~~h~~ 276 (352)
.++++.+|++++|.+
T Consensus 315 ~~~~~~~ililde~~ 329 (365)
T 1lw7_A 315 LDKYKVPYIEIESPS 329 (365)
T ss_dssp HHGGGCCCEEEECSS
T ss_pred HHHcCCCEEEeCCCC
Confidence 888899999988753
No 158
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.57 E-value=7e-05 Score=70.53 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=31.4
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDT 168 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~ 168 (352)
+++|+++.|+||+||||||++..++...... ..+.++++..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-----~~g~I~~~e~ 173 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT-----KSYHIITIED 173 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-----SCCEEEEEES
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-----CCcEEEEecc
Confidence 6789999999999999999999887654321 1456666653
No 159
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.57 E-value=0.00031 Score=65.62 Aligned_cols=113 Identities=13% Similarity=0.091 Sum_probs=58.3
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCH
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTY 203 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 203 (352)
.+..-++|+||||+|||+++..++... +...++++...-+.. + .
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~---------~~~~~~i~~~~l~~~----------------~-----------~ 158 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS---------GATFFSISASSLTSK----------------W-----------V 158 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT---------TCEEEEEEGGGGCCS----------------S-----------T
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---------CCeEEEEehHHhhcc----------------c-----------c
Confidence 345679999999999999999887652 446677765421110 0 0
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHH--hCcEEEEEcc
Q 047388 204 EHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEE--FNVAVYMTNQ 274 (352)
Q Consensus 204 ~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~--~~~~viv~~h 274 (352)
......+..+........+.+|+||++..+....-.+...... ..+.+++..|..+... .++.||.+++
T Consensus 159 g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~--~~~~~lL~~l~~~~~~~~~~v~vI~atn 229 (357)
T 3d8b_A 159 GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSR--RIKTEFLVQLDGATTSSEDRILVVGATN 229 (357)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHH--HHHHHHHHHHHC----CCCCEEEEEEES
T ss_pred chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHH--HHHHHHHHHHhcccccCCCCEEEEEecC
Confidence 0111122222233334578999999998886532111111121 2234555555544332 2455555544
No 160
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.56 E-value=0.00032 Score=67.49 Aligned_cols=121 Identities=17% Similarity=0.138 Sum_probs=69.5
Q ss_pred cccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH
Q 047388 104 AVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER 183 (352)
Q Consensus 104 ~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 183 (352)
..+.+.||+..+|.+. -+-+|+.+.|+|+||+|||+|+..++.+.... .+.-++|...-.. .....++.+.
T Consensus 131 ~~e~l~TGir~ID~L~--pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~-----~~~i~V~~~iGer--ttev~el~~~ 201 (473)
T 1sky_E 131 EVEILETGIKVVDLLA--PYIKGGKIGLFGGAGVGKTVLIQELIHNIAQE-----HGGISVFAGVGER--TREGNDLYHE 201 (473)
T ss_dssp SCCEECCSCHHHHHHS--CEETTCEEEEECCSSSCHHHHHHHHHHHHHHH-----TCCCEEEEEESSC--HHHHHHHHHH
T ss_pred cCccccccchHHHHHh--hhccCCEEEEECCCCCCccHHHHHHHhhhhhc-----cCcEEEEeeeccC--chHHHHHHHH
Confidence 3467999999999876 46688999999999999999999988775431 2334555543222 3445555443
Q ss_pred cCCCccccccc-EEEE-ecCCHHHHHH----HHHHHHHHhhc-CC-ceEEEEcccccchh
Q 047388 184 FGMDPGAVLDN-IIYA-RAYTYEHQYN----LLLGLAAKMSE-EP-FRLLIVDSVIALFR 235 (352)
Q Consensus 184 ~~~~~~~~~~~-i~~~-~~~~~~~~~~----~l~~l~~~l~~-~~-~~lvvIDsl~~l~~ 235 (352)
+.- ...+++ +.++ ...+...... .-..+.+.+.. .+ --++++|+++.+-.
T Consensus 202 l~~--~~~l~~tvvv~~~~~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~itR~a~ 259 (473)
T 1sky_E 202 MKD--SGVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFRFTQ 259 (473)
T ss_dssp HHH--TSGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTHHHHH
T ss_pred hhh--cCCcceeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 310 112333 2232 2222221111 01133344443 33 34667899987643
No 161
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.54 E-value=0.00033 Score=73.04 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=31.4
Q ss_pred CceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 221 PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 221 ~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
+++++|+|+.++-+.. ..+ ..++..|+++++ .|.|||+++|-..
T Consensus 826 ~p~LLILDEPTsGLD~--------~~~----~~L~~lL~~L~~-~G~TVIvI~HdL~ 869 (916)
T 3pih_A 826 GRTLYILDEPTVGLHF--------EDV----RKLVEVLHRLVD-RGNTVIVIEHNLD 869 (916)
T ss_dssp SSEEEEEESTTTTCCH--------HHH----HHHHHHHHHHHH-TTCEEEEECCCHH
T ss_pred CCCEEEEECCCCCCCH--------HHH----HHHHHHHHHHHh-cCCEEEEEeCCHH
Confidence 4689999998877532 222 367777777765 5899999999543
No 162
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.54 E-value=0.0003 Score=63.26 Aligned_cols=38 Identities=18% Similarity=0.092 Sum_probs=27.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
-+++| +.|+||||+|||+|+..++... +.+.++++...
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~---------~~~~i~i~g~~ 79 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANES---------GLNFISVKGPE 79 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHT---------TCEEEEEETTT
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHc---------CCCEEEEEcHH
Confidence 34555 9999999999999999887642 22467776543
No 163
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.53 E-value=0.00033 Score=66.93 Aligned_cols=89 Identities=19% Similarity=0.161 Sum_probs=55.6
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhh---HHHHHHHcCCCcccccccEEEEec-
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDR---IVPIAERFGMDPGAVLDNIIYARA- 200 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~r---l~~~~~~~~~~~~~~~~~i~~~~~- 200 (352)
++.++.++|++|+||||++..++..... .+++|++++... +.+.. +....+..+++ ++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~------~g~~Vllvd~D~-~r~aa~~qL~~~~~~~gv~---------v~~~~ 160 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG------KGRRPLLVAADT-QRPAAREQLRLLGEKVGVP---------VLEVM 160 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEEECCS-SCHHHHHHHHHHHHHHTCC---------EEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEeeccc-cCchhHHHHHHhcccCCcc---------EEecC
Confidence 6889999999999999999999987765 678899999853 34332 23334444432 2221
Q ss_pred --CCHHHHHHHHHHHHHHhhcCCceEEEEccccc
Q 047388 201 --YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIA 232 (352)
Q Consensus 201 --~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~ 232 (352)
.++... +......+...+.++||||....
T Consensus 161 ~~~~p~~i---~~~~l~~~~~~~~DvVIIDTaG~ 191 (425)
T 2ffh_A 161 DGESPESI---RRRVEEKARLEARDLILVDTAGR 191 (425)
T ss_dssp TTCCHHHH---HHHHHHHHHHTTCSEEEEECCCC
T ss_pred CCCCHHHH---HHHHHHHHHHCCCCEEEEcCCCc
Confidence 122222 22222233334678999997644
No 164
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.52 E-value=0.00049 Score=63.17 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=31.8
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
..+..+.|+||||+|||+|+..++..... .+.+++|++.+
T Consensus 35 ~~~~~lll~G~~GtGKT~la~~i~~~~~~------~~~~~~~i~~~ 74 (324)
T 1l8q_A 35 SLYNPIFIYGSVGTGKTHLLQAAGNEAKK------RGYRVIYSSAD 74 (324)
T ss_dssp TSCSSEEEECSSSSSHHHHHHHHHHHHHH------TTCCEEEEEHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHHH------CCCEEEEEEHH
Confidence 35678999999999999999988876543 35678888764
No 165
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=97.51 E-value=0.00056 Score=66.00 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=72.1
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHc
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERF 184 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 184 (352)
.+.+.||+..+|-++ -+-+|.-+.|+|++|+|||+|+..++.+.... .+.-++|...-.. .+....+.+.+
T Consensus 146 ~e~l~TGirvID~l~--pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~-----~~~v~V~~~iGER--~rEv~e~~~~~ 216 (498)
T 1fx0_B 146 LSIFETGIKVVNLLA--PYRRGGKIGLFGGAGVGKTVLIMELINNIAKA-----HGGVSVFGGVGER--TREGNDLYMEM 216 (498)
T ss_dssp CCCCCCSCTTHHHHS--CCCTTCCEEEEECSSSSHHHHHHHHHHHTTTT-----CSSCEEEEEESCC--SHHHHHHHHHH
T ss_pred ccccccceeEeeeec--ccccCCeEEeecCCCCCchHHHHHHHHHHHhh-----CCCEEEEEEcccC--cHHHHHHHHhh
Confidence 467999999999887 57799999999999999999999999886542 2345666643322 23344443332
Q ss_pred ----CCCccccc--ccEEEEecCCHHHHHH-----HHHHHHHHhhc-CCce-EEEEcccccchh
Q 047388 185 ----GMDPGAVL--DNIIYARAYTYEHQYN-----LLLGLAAKMSE-EPFR-LLIVDSVIALFR 235 (352)
Q Consensus 185 ----~~~~~~~~--~~i~~~~~~~~~~~~~-----~l~~l~~~l~~-~~~~-lvvIDsl~~l~~ 235 (352)
++++..++ .-+.++...+..-... .-..+.+.+.. .+-+ ++++||++.+..
T Consensus 217 ~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~A~ 280 (498)
T 1fx0_B 217 KESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQ 280 (498)
T ss_dssp HHTTSSCSSTTCCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHHHH
T ss_pred hcccccccccccccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 23322222 1233433322111111 11123344454 4444 556799987753
No 166
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.51 E-value=0.00029 Score=73.29 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
-|+.|+++.|+|++|||||||+..++
T Consensus 646 ~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 646 KIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999999998754
No 167
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.50 E-value=0.00041 Score=63.87 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.4
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
|.+| ++.|+|++|+|||+|+..+..
T Consensus 22 ~~~g-~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 22 FSDR-VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp CCSS-EEEEECCTTTCSTHHHHHHHH
T ss_pred cCCC-cEEEECCCCCcHHHHHHHHHH
Confidence 4566 999999999999999987654
No 168
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.50 E-value=0.00067 Score=71.73 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=31.9
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.++++|++|+++.-..+ ..+. ..+...|+.++++.++++|+++|-..
T Consensus 867 ~~~sLlLLDEp~~Gtd~--------~dg~---~~~~~il~~L~~~~g~~vl~~TH~~e 913 (1022)
T 2o8b_B 867 TAHSLVLVDELGRGTAT--------FDGT---AIANAVVKELAETIKCRTLFSTHYHS 913 (1022)
T ss_dssp CTTCEEEEECTTTTSCH--------HHHH---HHHHHHHHHHHHTSCCEEEEECCCHH
T ss_pred CCCcEEEEECCCCCCCh--------HHHH---HHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 37899999999765321 1221 23456667777666999999999654
No 169
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=97.49 E-value=0.001 Score=63.93 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=72.2
Q ss_pred cccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH
Q 047388 104 AVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER 183 (352)
Q Consensus 104 ~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 183 (352)
..+.+.||+..+|-++ -+-+|+-..|+|++|+|||+|+..++.+.... .+.-++|...... .+.+..+.+.
T Consensus 133 ~~e~l~TGir~ID~l~--pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~-----~~~v~V~~~iGER--~rEv~e~~~~ 203 (482)
T 2ck3_D 133 EQEILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGYSVFAGVGER--TREGNDLYHE 203 (482)
T ss_dssp CCCEECCSCHHHHHHS--CEETTCEEEEEECTTSSHHHHHHHHHHHTTTT-----CSSEEEEEEESCC--HHHHHHHHHH
T ss_pred cCcCCccceEEEeccc--ccccCCeeeeecCCCCChHHHHHHHHHhhHhh-----CCCEEEEEECCCc--chHHHHHHHH
Confidence 3467999999999887 57789999999999999999999999886542 2345666543322 3344444443
Q ss_pred c----CCCccccccc-EEEEecCCH-H--HHH--HHHHHHHHHhhc-CCc-eEEEEcccccchh
Q 047388 184 F----GMDPGAVLDN-IIYARAYTY-E--HQY--NLLLGLAAKMSE-EPF-RLLIVDSVIALFR 235 (352)
Q Consensus 184 ~----~~~~~~~~~~-i~~~~~~~~-~--~~~--~~l~~l~~~l~~-~~~-~lvvIDsl~~l~~ 235 (352)
+ ++++..-..+ +.++...+. . +.. ..-..+.+.+.. .+- =++++||++.+..
T Consensus 204 ~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~A~ 267 (482)
T 2ck3_D 204 MIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQ 267 (482)
T ss_dssp HHHHTSSCSSSSCCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHHHH
T ss_pred hhhccccccccCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 3 2321110113 333333221 1 111 111123344444 444 4667899987754
No 170
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.49 E-value=0.00013 Score=70.28 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=30.6
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
|+..+..-++|+||||+|||+|+..++... .+...++++..
T Consensus 162 ~~~~~~~~vLL~GppGtGKT~lA~aia~~~--------~~~~~~~v~~~ 202 (444)
T 2zan_A 162 GKRTPWRGILLFGPPGTGKSYLAKAVATEA--------NNSTFFSISSS 202 (444)
T ss_dssp GGGCCCSEEEEECSTTSSHHHHHHHHHHHC--------CSSEEEEECCC
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHc--------CCCCEEEEeHH
Confidence 455666789999999999999999887653 13456666654
No 171
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.48 E-value=0.00033 Score=58.21 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=22.1
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
.+..+.|+|++|+|||+++..++...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999888764
No 172
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.48 E-value=0.00032 Score=72.36 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=24.5
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
++|+++.|+||+|+|||||+.+++...
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 689999999999999999999988654
No 173
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.48 E-value=0.00024 Score=58.90 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhc
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQ 151 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~ 151 (352)
+..+.|+|++|+|||+++..++....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45679999999999999998887653
No 174
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.47 E-value=0.00023 Score=73.55 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=22.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHT 145 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~ 145 (352)
-|++|+++.|+|++|||||||+..
T Consensus 519 ~i~~Geiv~I~G~nGSGKSTLl~~ 542 (842)
T 2vf7_A 519 RFPLGVMTSVTGVSGSGKSTLVSQ 542 (842)
T ss_dssp EEESSSEEEEECCTTSSHHHHCCC
T ss_pred EEcCCCEEEEEcCCCcCHHHHHHH
Confidence 589999999999999999999985
No 175
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.44 E-value=0.00041 Score=72.43 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
-|+.|+++.|+|++|||||||+..++
T Consensus 664 ~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 664 SFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 57899999999999999999998754
No 176
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.44 E-value=0.00043 Score=64.14 Aligned_cols=24 Identities=17% Similarity=0.056 Sum_probs=20.8
Q ss_pred EEEecCCCCChhHHHHHHHHHhcC
Q 047388 129 TEAFGEFRSGKTQLAHTLCVCTQL 152 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la~~~~~ 152 (352)
+.|+||+|+||||++..++.....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 899999999999999988875543
No 177
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=97.43 E-value=0.00067 Score=65.41 Aligned_cols=119 Identities=19% Similarity=0.224 Sum_probs=70.1
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHc
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERF 184 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 184 (352)
.+.+.||+..+|-++ -+-+|+-..|+|++|+|||++++....+... .+..|+|...-.. ...+..+.+.+
T Consensus 143 ~epl~TGikaID~l~--PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~------~dv~~V~~~IGeR--~~ev~e~~~~l 212 (513)
T 3oaa_A 143 DQPVQTGYKAVDSMI--PIGRGQRELIIGDRQTGKTALAIDAIINQRD------SGIKCIYVAIGQK--ASTISNVVRKL 212 (513)
T ss_dssp CCBCCCSCHHHHHHS--CCBTTCBCEEEESSSSSHHHHHHHHHHTTSS------SSCEEEEEEESCC--HHHHHHHHHHH
T ss_pred Ccccccceeeecccc--ccccCCEEEeecCCCCCcchHHHHHHHhhcc------CCceEEEEEecCC--hHHHHHHHHHH
Confidence 467999999999987 5678999999999999999998766555322 3456778765433 34445544443
Q ss_pred CCCccccccc-EEEEecC-CHHH-HHHH---HHHHHHHhhcCCc-eEEEEcccccchh
Q 047388 185 GMDPGAVLDN-IIYARAY-TYEH-QYNL---LLGLAAKMSEEPF-RLLIVDSVIALFR 235 (352)
Q Consensus 185 ~~~~~~~~~~-i~~~~~~-~~~~-~~~~---l~~l~~~l~~~~~-~lvvIDsl~~l~~ 235 (352)
. ....+++ +.+.... .+.. .... -..+.+.+...+- -++++||++.+..
T Consensus 213 ~--~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~ 268 (513)
T 3oaa_A 213 E--EHGALANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAV 268 (513)
T ss_dssp H--HHSCSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHH
T ss_pred h--hcCcccceEEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHHHH
Confidence 1 0112334 3333322 2211 1111 1123344444444 4667899987643
No 178
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.40 E-value=0.00048 Score=64.44 Aligned_cols=98 Identities=13% Similarity=0.128 Sum_probs=53.2
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCc-cCCC-CCeEEEEeCCCCC-Chh-hHHHHHHHc-CCCcccccccEEEEec
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTN-MRGG-NGKVAYIDTEGTF-RPD-RIVPIAERF-GMDPGAVLDNIIYARA 200 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~-~gg~-~~~vl~i~~e~~~-~~~-rl~~~~~~~-~~~~~~~~~~i~~~~~ 200 (352)
+..+.|+||||+|||+++..++........ ..+. +..++|++..... ++. -+..+...+ +..... ..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~--------~~ 116 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPK--------HG 116 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCS--------SS
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCC--------CC
Confidence 458999999999999999988766422100 0002 5678888854322 222 233334443 322100 01
Q ss_pred CCHHHHHHHHHHHHHHhhcCCceEEEEcccccchh
Q 047388 201 YTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFR 235 (352)
Q Consensus 201 ~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~ 235 (352)
.+... .+..+...+...+. +|+||++..+..
T Consensus 117 ~~~~~---~~~~l~~~l~~~~~-vlilDEi~~l~~ 147 (384)
T 2qby_B 117 INLGE---YIDKIKNGTRNIRA-IIYLDEVDTLVK 147 (384)
T ss_dssp SCTHH---HHHHHHHHHSSSCE-EEEEETTHHHHH
T ss_pred CCHHH---HHHHHHHHhccCCC-EEEEECHHHhcc
Confidence 11122 23333444444444 999999987743
No 179
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.39 E-value=0.00062 Score=65.29 Aligned_cols=39 Identities=21% Similarity=0.103 Sum_probs=34.1
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCC-CCeEEEEeCCC
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG-NGKVAYIDTEG 170 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~-~~~vl~i~~e~ 170 (352)
..++.++|++|+||||++..+|..... . +.+|+.++...
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~------~~G~kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLRE------KHKKKVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHH------TSCCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH------hcCCeEEEEecCC
Confidence 468889999999999999999988776 5 78999999874
No 180
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=97.36 E-value=0.00078 Score=65.16 Aligned_cols=119 Identities=15% Similarity=0.170 Sum_probs=70.3
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHc
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERF 184 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 184 (352)
.+.+.||+..+|-++ -+-+|+-..|+|++|+|||+|++....+... .+..|+|...... .+.+..+.+.+
T Consensus 156 ~epl~TGiraID~l~--PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~------~dv~~V~~~IGeR--~~Ev~e~~~~~ 225 (515)
T 2r9v_A 156 DTPLQTGIKAIDSMI--PIGRGQRELIIGDRQTGKTAIAIDTIINQKG------QGVYCIYVAIGQK--KSAIARIIDKL 225 (515)
T ss_dssp CSEECCSCHHHHHHS--CEETTCBEEEEEETTSSHHHHHHHHHHTTTT------TTEEEEEEEESCC--HHHHHHHHHHH
T ss_pred CcchhcCcccccccc--ccccCCEEEEEcCCCCCccHHHHHHHHHhhc------CCcEEEEEEcCCC--cHHHHHHHHHH
Confidence 457999999999987 5778999999999999999997755555432 3345677765433 44455554443
Q ss_pred CCCccccccc-EEEEecCC-HH-HHHH---HHHHHHHHhhcCCc-eEEEEcccccchh
Q 047388 185 GMDPGAVLDN-IIYARAYT-YE-HQYN---LLLGLAAKMSEEPF-RLLIVDSVIALFR 235 (352)
Q Consensus 185 ~~~~~~~~~~-i~~~~~~~-~~-~~~~---~l~~l~~~l~~~~~-~lvvIDsl~~l~~ 235 (352)
. ....+++ +.+....+ +. .... .-..+.+.+...+- -++++||++.+..
T Consensus 226 ~--~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr~A~ 281 (515)
T 2r9v_A 226 R--QYGAMEYTTVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSKHAV 281 (515)
T ss_dssp H--HTTGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHH
T ss_pred H--hCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHHHHH
Confidence 1 1123344 33333222 11 1111 11123344444444 4667899987654
No 181
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.36 E-value=0.00027 Score=67.87 Aligned_cols=55 Identities=24% Similarity=0.245 Sum_probs=43.4
Q ss_pred cccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 106 IKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 106 ~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
..+.||...||.++ -+.+|+++.|+|++|||||||+..++..... ...++.+..+
T Consensus 139 ~~~~tg~~vld~vl--~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~-------~~G~i~~~G~ 193 (438)
T 2dpy_A 139 HVLDTGVRAINALL--TVGRGQRMGLFAGSGVGKSVLLGMMARYTRA-------DVIVVGLIGE 193 (438)
T ss_dssp SBCCCSCHHHHHHS--CCBTTCEEEEEECTTSSHHHHHHHHHHHSCC-------SEEEEEEESC
T ss_pred eecCCCceEEeeeE--EecCCCEEEEECCCCCCHHHHHHHHhcccCC-------CeEEEEEece
Confidence 34667899999985 6899999999999999999999877765432 3446666665
No 182
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.33 E-value=0.00011 Score=63.06 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=23.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.||||||||||+..++..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4788999999999999999999977654
No 183
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.33 E-value=0.00015 Score=59.65 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=25.9
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+++|+++.|.||+|+|||||+..++...
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 46899999999999999999999887654
No 184
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.31 E-value=0.00036 Score=61.64 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=21.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++| +.|+||||+|||+|+..++..
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 34566 899999999999999988764
No 185
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.31 E-value=0.0021 Score=54.48 Aligned_cols=22 Identities=27% Similarity=0.051 Sum_probs=20.0
Q ss_pred EEEecCCCCChhHHHHHHHHHh
Q 047388 129 TEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la~~~ 150 (352)
+.|+||+|+|||+++..++...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999887654
No 186
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.30 E-value=0.0013 Score=64.53 Aligned_cols=41 Identities=15% Similarity=0.029 Sum_probs=32.0
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFR 173 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~ 173 (352)
++...+.|+||||+|||+++..++... +..+++++......
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l---------~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQEL---------GYDILEQNASDVRS 115 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHT---------TCEEEEECTTSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc---------CCCEEEEeCCCcch
Confidence 456789999999999999999887653 45788887765433
No 187
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.28 E-value=0.00015 Score=60.85 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=23.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
|-.+|.++.|+||||||||||+..++..
T Consensus 1 ~~~~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 1 GSHMRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4467899999999999999999987764
No 188
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=97.28 E-value=0.0013 Score=63.63 Aligned_cols=119 Identities=15% Similarity=0.170 Sum_probs=69.9
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHc
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERF 184 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 184 (352)
.+.+.||+..+|-++ -+-+|+-..|+|++|+|||+|++....+... .+..++|...... .+.+..+.+.+
T Consensus 143 ~epl~TGiraID~l~--PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~------~dv~~V~~~iGeR--~~Ev~~~~~~~ 212 (502)
T 2qe7_A 143 HEPLQTGIKAIDSMI--PIGRGQRELIIGDRQTGKTTIAIDTIINQKG------QDVICIYVAIGQK--QSTVAGVVETL 212 (502)
T ss_dssp CSBCCCSCHHHHHSS--CCBTTCBCEEEECSSSCHHHHHHHHHHGGGS------CSEEEEEEEESCC--HHHHHHHHHHH
T ss_pred CCccccceeeccccc--ccccCCEEEEECCCCCCchHHHHHHHHHhhc------CCcEEEEEECCCc--chHHHHHHHHH
Confidence 457999999999887 5779999999999999999998765555442 3445677764433 44444444433
Q ss_pred CCCccccccc-EEEEecCCHHHHHHH-----HHHHHHHhhcCCce-EEEEcccccchh
Q 047388 185 GMDPGAVLDN-IIYARAYTYEHQYNL-----LLGLAAKMSEEPFR-LLIVDSVIALFR 235 (352)
Q Consensus 185 ~~~~~~~~~~-i~~~~~~~~~~~~~~-----l~~l~~~l~~~~~~-lvvIDsl~~l~~ 235 (352)
.- ...+++ +.+....+..-.... -..+.+.+...+-+ ++++||++.+..
T Consensus 213 ~~--~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~A~ 268 (502)
T 2qe7_A 213 RQ--HDALDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQAA 268 (502)
T ss_dssp HH--TTCSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHH
T ss_pred hh--CCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHHH
Confidence 10 122334 333333221111111 11233444444444 667899987654
No 189
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.27 E-value=0.00048 Score=67.22 Aligned_cols=38 Identities=21% Similarity=0.146 Sum_probs=28.5
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
.-+++| +.|+||||+|||+|+..++... +.+.++++..
T Consensus 61 ~~ip~G--vLL~GppGtGKTtLaraIa~~~---------~~~~i~i~g~ 98 (499)
T 2dhr_A 61 ARIPKG--VLLVGPPGVGKTHLARAVAGEA---------RVPFITASGS 98 (499)
T ss_dssp CCCCSE--EEEECSSSSSHHHHHHHHHHHT---------TCCEEEEEGG
T ss_pred CCCCce--EEEECCCCCCHHHHHHHHHHHh---------CCCEEEEehh
Confidence 345566 8999999999999999887653 2456777654
No 190
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=97.27 E-value=0.0024 Score=62.54 Aligned_cols=119 Identities=16% Similarity=0.314 Sum_probs=72.8
Q ss_pred cccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH
Q 047388 104 AVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER 183 (352)
Q Consensus 104 ~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 183 (352)
..+.+.||+..+|-++ -+-+|.-..|+|++|+|||+|+.+++.+.. ..-++|...-.. ...+..+.+.
T Consensus 212 ~~epl~TGirvID~l~--PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~--------~~v~V~~~iGER--~~Ev~e~~~~ 279 (600)
T 3vr4_A 212 PDVPMITGQRVIDTFF--PVTKGGAAAVPGPFGAGKTVVQHQIAKWSD--------VDLVVYVGCGER--GNEMTDVVNE 279 (600)
T ss_dssp CCSBCCCCCHHHHHHS--CCBTTCEEEEECCTTSCHHHHHHHHHHHSS--------CSEEEEEEEEEC--HHHHHHHHHH
T ss_pred CCceecccchhhhccC--CccCCCEEeeecCCCccHHHHHHHHHhccC--------CCEEEEEEeccc--HHHHHHHHHH
Confidence 3467999999999987 577899999999999999999999876532 235666654332 4556666666
Q ss_pred cCC--Cc---cccccc-EEEEec-CCHHH-HHH---HHHHHHHHhhcCCce-EEEEcccccch
Q 047388 184 FGM--DP---GAVLDN-IIYARA-YTYEH-QYN---LLLGLAAKMSEEPFR-LLIVDSVIALF 234 (352)
Q Consensus 184 ~~~--~~---~~~~~~-i~~~~~-~~~~~-~~~---~l~~l~~~l~~~~~~-lvvIDsl~~l~ 234 (352)
+.- ++ ...+++ +.+... ..+.. ... .-..+.+.+...+-+ ++++||++.+.
T Consensus 280 ~~el~d~~~G~~~m~rtvvV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~tR~A 342 (600)
T 3vr4_A 280 FPELIDPNTGESLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTSRWA 342 (600)
T ss_dssp TTTCBCTTTCSBGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHH
T ss_pred HHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHHH
Confidence 532 11 234555 333322 22211 111 111233444444445 45679998654
No 191
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=97.25 E-value=0.0019 Score=63.02 Aligned_cols=119 Identities=18% Similarity=0.249 Sum_probs=73.1
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHc
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERF 184 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 184 (352)
.+.+.||+..+|-++ -+-+|.-..|+|++|+|||+|+.+++.+. ...-++|...-.. .+.+..+.+.+
T Consensus 208 ~epl~TGirvID~l~--PigkGqr~~I~g~~g~GKT~L~~~ia~~~--------~~~~~V~~~iGER--~~Ev~e~~~~~ 275 (588)
T 3mfy_A 208 EVPLITGQRVIDTFF--PQAKGGTAAIPGPAGSGKTVTQHQLAKWS--------DAQVVIYIGCGER--GNEMTDVLEEF 275 (588)
T ss_dssp CSEECCSCHHHHHHS--CEETTCEEEECSCCSHHHHHHHHHHHHHS--------SCSEEEEEECCSS--SSHHHHHHHHT
T ss_pred CcccccCcchhhccC--CcccCCeEEeecCCCCCHHHHHHHHHhcc--------CCCEEEEEEeccc--HHHHHHHHHHH
Confidence 457889999999987 56789999999999999999999987652 2346777765443 34466666665
Q ss_pred CC-----CcccccccEE-EEecCC-H-H-HHHH--HHHHHHHHhhcCCce-EEEEcccccchh
Q 047388 185 GM-----DPGAVLDNII-YARAYT-Y-E-HQYN--LLLGLAAKMSEEPFR-LLIVDSVIALFR 235 (352)
Q Consensus 185 ~~-----~~~~~~~~i~-~~~~~~-~-~-~~~~--~l~~l~~~l~~~~~~-lvvIDsl~~l~~ 235 (352)
.- .-...+++-. +....+ + . .... .-..+.+.+...+-+ ++++||++.+..
T Consensus 276 ~el~d~~~g~~~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~A~ 338 (588)
T 3mfy_A 276 PKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAE 338 (588)
T ss_dssp TTCEETTTTEEGGGGEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTCCC
T ss_pred HHhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHHHHH
Confidence 32 1123455533 332222 1 1 1111 111233444444444 456799987654
No 192
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.23 E-value=0.0017 Score=63.41 Aligned_cols=46 Identities=11% Similarity=0.049 Sum_probs=32.1
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
+..+.-++|+|.+|||||+++..++..++..... ..-.++.+|..+
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p--~~v~l~liDpK~ 209 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQP--EDVRFIMIDPKM 209 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCT--TTEEEEEECCSS
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHHhCCC--ceEEEEEECCch
Confidence 5567889999999999999999988765542111 123455566553
No 193
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.23 E-value=0.0019 Score=61.89 Aligned_cols=38 Identities=29% Similarity=0.179 Sum_probs=32.6
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
.++.|+|++|+||||++..++..... .+.+|++++...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~------~G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQK------RGLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHH------HHCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEEeccc
Confidence 58999999999999999999987764 567899998763
No 194
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.23 E-value=0.0006 Score=65.59 Aligned_cols=40 Identities=23% Similarity=0.217 Sum_probs=30.4
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
+..+.|+||||+|||+|+..++...... ..+.+++|++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~----~~~~~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN----EPDLRVMYITSE 169 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHH----CCSSCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHh----CCCCeEEEeeHH
Confidence 5679999999999999999887655321 025678888765
No 195
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.22 E-value=0.00018 Score=61.20 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=23.4
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
++|+++.|+|||||||||++..++..
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 57999999999999999999987764
No 196
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.20 E-value=0.0026 Score=59.13 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=28.3
Q ss_pred hhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhc
Q 047388 118 LLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQ 151 (352)
Q Consensus 118 ~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~ 151 (352)
.+..|..+|..+.|+||||+|||+++..++....
T Consensus 62 ~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 62 MIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp HHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3346777788999999999999999998887654
No 197
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.20 E-value=0.0003 Score=59.92 Aligned_cols=40 Identities=23% Similarity=0.183 Sum_probs=30.9
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
++|.++.|.|+|||||||++..++..... .+..++|++++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~------~G~~~~~~d~d 62 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQ------KGKLCYILDGD 62 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh------cCceEEEecCc
Confidence 67999999999999999999988765432 23345677754
No 198
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=97.20 E-value=0.0011 Score=63.50 Aligned_cols=123 Identities=16% Similarity=0.163 Sum_probs=71.0
Q ss_pred cccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH
Q 047388 104 AVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER 183 (352)
Q Consensus 104 ~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 183 (352)
..+.+.||+..+|-++ -+-+|+-..|+|++|+|||+|+.+++.......+ +.+--++|...-.. ...+..+.+.
T Consensus 131 ~~e~l~TGiraID~l~--pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d--~~~~~~V~~~iGeR--~~Ev~e~~~~ 204 (465)
T 3vr4_D 131 PDEFIQTGISAIDHLN--TLVRGQKLPVFSGSGLPHKELAAQIARQATVLDS--SDDFAVVFAAIGIT--FEEAEFFMED 204 (465)
T ss_dssp CCCBCBCSCHHHHTTS--CCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSC--SSCEEEEEEEEEEC--HHHHHHHHHH
T ss_pred cccccccCceEEeccc--ccccCCEEEEeCCCCcChHHHHHHHHHHHHhccC--CCceEEEEEEecCC--cHHHHHHHHH
Confidence 3457999999999887 5678999999999999999999988876543100 12225666654322 3344444443
Q ss_pred cCCCccccccc-EEEEe-cCCHH-HHHH---HHHHHHHHhhc-CCceEE-EEcccccch
Q 047388 184 FGMDPGAVLDN-IIYAR-AYTYE-HQYN---LLLGLAAKMSE-EPFRLL-IVDSVIALF 234 (352)
Q Consensus 184 ~~~~~~~~~~~-i~~~~-~~~~~-~~~~---~l~~l~~~l~~-~~~~lv-vIDsl~~l~ 234 (352)
+.- ...+++ +.+.. ...+. .... .-..+.+.+.. .+-+++ ++|+++.+.
T Consensus 205 ~~~--~g~~~rtvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr~A 261 (465)
T 3vr4_D 205 FRQ--TGAIDRSVMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTNYA 261 (465)
T ss_dssp HHH--HTGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHHHH
T ss_pred Hhh--cCCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHHH
Confidence 311 123344 33332 22221 1111 11133445554 355655 579998764
No 199
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.19 E-value=0.00018 Score=62.37 Aligned_cols=28 Identities=18% Similarity=0.019 Sum_probs=23.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|+||||||||||+..++..
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4788999999999999999999987764
No 200
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.16 E-value=0.00036 Score=71.50 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=23.4
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhc
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQ 151 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~ 151 (352)
|+++.|+||+|+|||||+.+++....
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 89999999999999999999887543
No 201
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.13 E-value=0.00027 Score=60.64 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=24.7
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
.++|+++.|.|+||||||||+..++...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999877654
No 202
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.12 E-value=0.00027 Score=60.16 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=23.4
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
+++|.++.|+|+|||||||++..++..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999977654
No 203
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.12 E-value=0.0016 Score=58.98 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=28.6
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeC
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDT 168 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~ 168 (352)
++.-+.|+||||+|||+++..++........ .....+++++.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~--~~~~~~~~~~~ 107 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGY--VRKGHLVSVTR 107 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTS--SSSCCEEEECG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCC--cCCCcEEEEcH
Confidence 4557999999999999999988766532100 02345677664
No 204
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.12 E-value=0.0004 Score=57.90 Aligned_cols=39 Identities=18% Similarity=0.026 Sum_probs=29.1
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDT 168 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~ 168 (352)
++|.++.|+|++||||||++..++..... .+.++++++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~------~g~~~i~~d~ 41 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC------HGIPCYTLDG 41 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH------TTCCEEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh------CCCcEEEECC
Confidence 67999999999999999999988764321 2445666663
No 205
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=97.11 E-value=0.0024 Score=61.79 Aligned_cols=118 Identities=18% Similarity=0.191 Sum_probs=70.5
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHc
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERF 184 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 184 (352)
.+.+.||+..+|-++ -+-+|+-..|+|++|+|||+|++....+... .+..++|...... .+.+..+.+.+
T Consensus 144 ~epl~TGiraID~l~--PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~------~dv~~V~~~iGeR--~~Ev~~~~~~~ 213 (507)
T 1fx0_A 144 YEPLQTGLIAIDAMI--PVGRGQRELIIGDRQTGKTAVATDTILNQQG------QNVICVYVAIGQK--ASSVAQVVTNF 213 (507)
T ss_dssp CSBCCCSCTTTTTTS--CCBTTCBCBEEESSSSSHHHHHHHHHHTCCT------TTCEEEEEEESCC--HHHHHHHHHHT
T ss_pred CCcccccceeccccc--ccccCCEEEEecCCCCCccHHHHHHHHHhhc------CCcEEEEEEcCCC--chHHHHHHHHH
Confidence 356999999999887 5779999999999999999998766555442 3456777765433 44556665554
Q ss_pred CCCccccccc-EEEEecCCH---HHHH--HHHHHHHHHhhcCCc-eEEEEcccccch
Q 047388 185 GMDPGAVLDN-IIYARAYTY---EHQY--NLLLGLAAKMSEEPF-RLLIVDSVIALF 234 (352)
Q Consensus 185 ~~~~~~~~~~-i~~~~~~~~---~~~~--~~l~~l~~~l~~~~~-~lvvIDsl~~l~ 234 (352)
. ....+++ +.+....+. .+.. ..-..+.+.+...+- -++++||++.+.
T Consensus 214 ~--~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A 268 (507)
T 1fx0_A 214 Q--ERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQA 268 (507)
T ss_dssp G--GGTGGGSEEEEEECTTSCGGGTTHHHHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred H--hcCccccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHH
Confidence 2 1223344 333322211 1111 111123333444444 466779988763
No 206
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.11 E-value=0.0041 Score=53.35 Aligned_cols=25 Identities=24% Similarity=0.097 Sum_probs=21.7
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhc
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQ 151 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~ 151 (352)
..+.|+|++|+|||+++..++....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3899999999999999998876654
No 207
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.11 E-value=0.00027 Score=61.36 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=23.0
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.-.++|+++.|+||||||||||+..++..
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 35789999999999999999999977654
No 208
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.09 E-value=0.0025 Score=59.96 Aligned_cols=99 Identities=18% Similarity=0.149 Sum_probs=55.5
Q ss_pred CCcEEEE--ecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChh-hHHHHHHHcCCCcccccccEEEEecC
Q 047388 125 TGAITEA--FGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPD-RIVPIAERFGMDPGAVLDNIIYARAY 201 (352)
Q Consensus 125 ~G~i~~I--~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~-rl~~~~~~~~~~~~~~~~~i~~~~~~ 201 (352)
.+..+.| +|++|+|||+++..++..........+.+..++|++........ -+..++..++..... ...
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--------~~~ 120 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQV--------RGA 120 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCC--------TTC
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCC--------CCC
Confidence 4567888 99999999999998876543200000124578899864333332 344556666543210 011
Q ss_pred CHHHHHHHHHHHHHHhh-cCCceEEEEcccccch
Q 047388 202 TYEHQYNLLLGLAAKMS-EEPFRLLIVDSVIALF 234 (352)
Q Consensus 202 ~~~~~~~~l~~l~~~l~-~~~~~lvvIDsl~~l~ 234 (352)
+..... ..+...+. ..++-+||||++..+.
T Consensus 121 ~~~~~~---~~l~~~l~~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 121 PALDIL---KALVDNLYVENHYLLVILDEFQSML 151 (412)
T ss_dssp CHHHHH---HHHHHHHHHHTCEEEEEEESTHHHH
T ss_pred CHHHHH---HHHHHHHHhcCCeEEEEEeCHHHHh
Confidence 222222 22333332 2357799999998774
No 209
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.09 E-value=0.00053 Score=58.43 Aligned_cols=41 Identities=24% Similarity=0.168 Sum_probs=31.9
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
.++|.++.|+|++||||||++..++..... .++.+.+++..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~------~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE------QGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHH------TTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh------cCCeEEEeccC
Confidence 567899999999999999999988765432 35667777554
No 210
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.08 E-value=0.003 Score=57.89 Aligned_cols=33 Identities=24% Similarity=0.189 Sum_probs=27.0
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
|.++.|+|++|+|||+|+.+++... +++|++..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~-----------~~~~~~~~ 63 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER-----------PGILIDCR 63 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS-----------SEEEEEHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc-----------CcEEEEee
Confidence 3699999999999999999887541 17888764
No 211
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=97.08 E-value=0.0015 Score=62.64 Aligned_cols=123 Identities=14% Similarity=0.139 Sum_probs=71.4
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHc
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERF 184 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 184 (352)
.+.+.||+..+|-++ -+-+|+-..|+|++|+|||+|+.++|.+...... +.+.-++|...-.. .+.+..+.+.+
T Consensus 133 ~e~l~TGir~ID~l~--pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~--~~~~~~V~~~iGER--~~Ev~e~~~~~ 206 (469)
T 2c61_A 133 KDFIQTGISTIDGTN--TLVRGQKLPIFSASGLPHNEIALQIARQASVPGS--ESAFAVVFAAMGIT--NEEAQYFMSDF 206 (469)
T ss_dssp CSBCBCSCHHHHTTS--CCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTC--SSCEEEEEEEEEEC--HHHHHHHHHHH
T ss_pred ccccceeeEeeeeee--ccccCCEEEEECCCCCCHHHHHHHHHHHHhhccC--CCCcEEEEEEccCC--cHHHHHHHHHH
Confidence 357999999999887 5778999999999999999999999987654210 01235666654322 33344444433
Q ss_pred CCCccccccc-EEEEec-CCHH-HHHH---HHHHHHHHhh-cC-CceEEEEcccccchh
Q 047388 185 GMDPGAVLDN-IIYARA-YTYE-HQYN---LLLGLAAKMS-EE-PFRLLIVDSVIALFR 235 (352)
Q Consensus 185 ~~~~~~~~~~-i~~~~~-~~~~-~~~~---~l~~l~~~l~-~~-~~~lvvIDsl~~l~~ 235 (352)
. ....+++ +.+... ..+. .... .-..+.+.+. +. +-=++++||++.+..
T Consensus 207 ~--~~g~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR~A~ 263 (469)
T 2c61_A 207 E--KTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAE 263 (469)
T ss_dssp H--HHSGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHHH
T ss_pred H--hccCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHH
Confidence 1 1123344 333322 2221 1111 1112334444 23 344667899987754
No 212
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.06 E-value=0.00033 Score=63.92 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=29.3
Q ss_pred hhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 114 ALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 114 ~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
.|+.+. =.+++|+++.|+||||||||||+..++...
T Consensus 115 vL~~vs-l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWL-KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHH-HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccce-EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344433 379999999999999999999999877653
No 213
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.06 E-value=0.00017 Score=62.21 Aligned_cols=27 Identities=41% Similarity=0.415 Sum_probs=24.2
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
+++|+++.|.||+|||||||+..++..
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 588999999999999999999977654
No 214
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.01 E-value=0.0006 Score=57.18 Aligned_cols=39 Identities=31% Similarity=0.254 Sum_probs=31.8
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDT 168 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~ 168 (352)
.+|.++.|.|++||||||++..++..... .+.++.+++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~------~~~~~~~~~~ 49 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK------EGYRVEVLDG 49 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH------TTCCEEEEEH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh------cCCeEEEeeH
Confidence 57899999999999999999988876543 4566777764
No 215
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.01 E-value=0.00058 Score=62.44 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=32.4
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcC-CCccCCCCCeEEEEeCCC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQL-PTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~-~~~~gg~~~~vl~i~~e~ 170 (352)
..+|+++.|+|++|||||||+..++..... | ..+.+.+++..+
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~-----~~G~i~vi~~d~ 120 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWP-----EHRRVELITTDG 120 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST-----TCCCEEEEEGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC-----CCCeEEEEecCC
Confidence 367899999999999999999977654331 2 356677776654
No 216
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=97.01 E-value=0.0025 Score=62.17 Aligned_cols=119 Identities=20% Similarity=0.314 Sum_probs=70.9
Q ss_pred cccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH
Q 047388 104 AVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER 183 (352)
Q Consensus 104 ~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 183 (352)
..+.+.||+..+|-++ -+-+|.-..|+|++|+|||+|+.+++.+.. ..-++|...-.. ...+..+.+.
T Consensus 201 ~~epl~TGirvID~l~--PigrGqr~~Ifg~~g~GKT~l~~~ia~~~~--------~~v~V~~~iGER--~~Ev~e~~~~ 268 (578)
T 3gqb_A 201 PNTPFLTGMRILDVLF--PVAMGGTAAIPGPFGSGKSVTQQSLAKWSN--------ADVVVYVGSGER--GNEMTDVLVE 268 (578)
T ss_dssp SCSEECCSCHHHHTTS--CEETTCEEEECCCTTSCHHHHHHHHHHHSS--------CSEEEEEEEEEC--HHHHHHHHTT
T ss_pred CCCcccccchhhhhcc--cccCCCEEeeeCCCCccHHHHHHHHHhccC--------CCEEEEEEeccc--HHHHHHHHHH
Confidence 3467999999999877 577899999999999999999999876532 235666654332 4445555554
Q ss_pred cCC--Cc---ccccccE-EEEec-CCHHH-HHH---HHHHHHHHhhcCCceE-EEEcccccch
Q 047388 184 FGM--DP---GAVLDNI-IYARA-YTYEH-QYN---LLLGLAAKMSEEPFRL-LIVDSVIALF 234 (352)
Q Consensus 184 ~~~--~~---~~~~~~i-~~~~~-~~~~~-~~~---~l~~l~~~l~~~~~~l-vvIDsl~~l~ 234 (352)
+.- ++ ...+++- .+... ..+.. ... .-..+.+.+...+-++ +++||++.+.
T Consensus 269 ~~el~d~~~G~~~~~rtvvv~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~tR~A 331 (578)
T 3gqb_A 269 FPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWA 331 (578)
T ss_dssp GGGCBCTTTSSBSGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCEEEECCSCHHHHH
T ss_pred HHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecChHHHH
Confidence 421 11 2345553 33322 22221 111 1112334444455554 4569998654
No 217
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.00 E-value=0.00023 Score=73.08 Aligned_cols=116 Identities=18% Similarity=0.206 Sum_probs=62.8
Q ss_pred cCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHc-CCCcccccccEEEE
Q 047388 120 GGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERF-GMDPGAVLDNIIYA 198 (352)
Q Consensus 120 ~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~-~~~~~~~~~~i~~~ 198 (352)
..|+++..-++++||||+|||.++..+|...- .. |+.... + .+...+ |-
T Consensus 505 ~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~---------~~--f~~v~~---~----~l~s~~vGe------------ 554 (806)
T 3cf2_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---------AN--FISIKG---P----ELLTMWFGE------------ 554 (806)
T ss_dssp SSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT---------CE--EEECCH---H----HHHTTTCSS------------
T ss_pred hcCCCCCceEEEecCCCCCchHHHHHHHHHhC---------Cc--eEEecc---c----hhhccccch------------
Confidence 35777777799999999999999998876532 22 333321 1 111111 11
Q ss_pred ecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCC-cchHHHHHHHHHHHHHHHHHHHHhCcEEEEE
Q 047388 199 RAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGR-GELADRQQKLGQMLSRLTKISEEFNVAVYMT 272 (352)
Q Consensus 199 ~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~-g~~~~r~~~l~~i~~~L~~la~~~~~~viv~ 272 (352)
.+ ..+.++....+...+.+|+||++-++....-.+. ++.....+.+.+++..|..+....++.||.+
T Consensus 555 ----se---~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~a 622 (806)
T 3cf2_A 555 ----SE---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGA 622 (806)
T ss_dssp ----CH---HHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC
T ss_pred ----HH---HHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEe
Confidence 11 1223333344556789999999999876421110 1111122345677777776655556555543
No 218
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=96.99 E-value=0.0015 Score=62.42 Aligned_cols=126 Identities=13% Similarity=0.135 Sum_probs=71.6
Q ss_pred cccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCC----ccC-CCCCeEEEEeCCCCCChhhHH
Q 047388 104 AVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPT----NMR-GGNGKVAYIDTEGTFRPDRIV 178 (352)
Q Consensus 104 ~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~----~~g-g~~~~vl~i~~e~~~~~~rl~ 178 (352)
..+.+.||+..+|-++ -+-+|+-..|+|++|+|||+|+.+++....... ..| +.+--++|...-.. .+.+.
T Consensus 127 ~~e~l~TGiraID~l~--pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR--~~Ev~ 202 (464)
T 3gqb_B 127 PEQFIQTGISTIDVMN--TLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGIT--QRELS 202 (464)
T ss_dssp CCCBCBCSCHHHHTTS--CCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEEC--HHHHH
T ss_pred ccccccCcceeeeccc--ccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCc--hHHHH
Confidence 3467999999999887 577899999999999999999998877654310 000 12225666654322 33444
Q ss_pred HHHHHcCCCccccccc-EEEEec-CCH--HHHHH--HHHHHHHHhhc-CCceEE-EEcccccchh
Q 047388 179 PIAERFGMDPGAVLDN-IIYARA-YTY--EHQYN--LLLGLAAKMSE-EPFRLL-IVDSVIALFR 235 (352)
Q Consensus 179 ~~~~~~~~~~~~~~~~-i~~~~~-~~~--~~~~~--~l~~l~~~l~~-~~~~lv-vIDsl~~l~~ 235 (352)
.+.+.+.- ...+++ +.+... ..+ .+... .-..+.+.+.. .+-+++ ++|+++.+..
T Consensus 203 e~~~~l~~--~g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~A~ 265 (464)
T 3gqb_B 203 YFIQEFER--TGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYSE 265 (464)
T ss_dssp HHHHHHHH--TSGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHHHHH
T ss_pred HHHHHhhh--cccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHHHH
Confidence 44444321 123344 333322 221 22111 11233445553 355655 5799987643
No 219
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.99 E-value=0.0011 Score=53.33 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=20.3
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
+.-+.|.|+||+|||+++..++..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 445899999999999999977654
No 220
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.97 E-value=0.004 Score=55.40 Aligned_cols=27 Identities=26% Similarity=0.063 Sum_probs=23.0
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-++..-+.|+||||+|||+++..++..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 455567899999999999999988775
No 221
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.96 E-value=0.00038 Score=59.33 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=21.1
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
++|.++.|+||||+|||||+..++..
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999987764
No 222
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.94 E-value=0.00048 Score=59.08 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=23.4
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
++|.++.|+||||+||||++..++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 57999999999999999999987754
No 223
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.93 E-value=0.00048 Score=58.62 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=28.6
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~ 171 (352)
++|.++.|+|+|||||||++..++... +.+++++..-
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~-----------g~~~i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET-----------GLEFAEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH-----------CCEEEEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh-----------CCeEEccccc
Confidence 579999999999999999999887542 2467776543
No 224
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.93 E-value=0.00028 Score=61.55 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=19.2
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHH
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
+++|+++.|+||+||||||++..++
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999999999776
No 225
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.93 E-value=0.0082 Score=54.74 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=27.7
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
.++.++||||+|||+++..++... +..+++++...
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l---------~~~~~~i~~~~ 83 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV---------NADMMFVNGSD 83 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT---------TEEEEEEETTT
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh---------CCCEEEEcccc
Confidence 578999999999999999887653 45678887543
No 226
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.93 E-value=0.0028 Score=58.23 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=29.2
Q ss_pred EEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~ 171 (352)
++.|.|++|||||||+..++......+ .++.+.+++.++-
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~----~~~~v~~i~~D~f 133 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWP----DHPNVEVITTDGF 133 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTST----TCCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccC----CCCeEEEEeeccc
Confidence 899999999999999997765433200 2456777877653
No 227
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.89 E-value=0.00051 Score=60.52 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=23.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|.++.|.||+|||||||+..++..
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999999987664
No 228
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.88 E-value=0.0014 Score=61.40 Aligned_cols=58 Identities=10% Similarity=0.020 Sum_probs=45.2
Q ss_pred cccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 106 IKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 106 ~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
+.+.||+..+|-++ -+-+|+-..|+|++|+|||+|+.+++.++... +.+-.|+|....
T Consensus 157 e~~~tGiraID~l~--PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~----~~dv~~V~~lIG 214 (427)
T 3l0o_A 157 DPKIYSTRLIDLFA--PIGKGQRGMIVAPPKAGKTTILKEIANGIAEN----HPDTIRIILLID 214 (427)
T ss_dssp STTCHHHHHHHHHS--CCBTTCEEEEEECTTCCHHHHHHHHHHHHHHH----CTTSEEEEEECS
T ss_pred cchhccchhhhhcc--cccCCceEEEecCCCCChhHHHHHHHHHHhhc----CCCeEEEEEEec
Confidence 46789999999887 46689999999999999999999888765431 023456776554
No 229
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.88 E-value=0.00053 Score=58.66 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=31.1
Q ss_pred ChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 112 SQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 112 ~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
+..|...+. |+|+...++|+||||+|||++|+.++..
T Consensus 45 ~~~l~~~~~-~iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLK-GTPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHH-TCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 556777774 6998888999999999999999988765
No 230
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=96.87 E-value=0.0045 Score=59.90 Aligned_cols=125 Identities=16% Similarity=0.173 Sum_probs=69.6
Q ss_pred ccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccC--CCCCeEEEEeCCCCCChhhHHHHHH
Q 047388 105 VIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMR--GGNGKVAYIDTEGTFRPDRIVPIAE 182 (352)
Q Consensus 105 ~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~g--g~~~~vl~i~~e~~~~~~rl~~~~~ 182 (352)
.+.+.||+..+|-++ -+-+|+-..|+|++|+|||+|++....+......-+ ..+..|+|...... .+.+..+.+
T Consensus 143 ~epl~TGiraID~l~--PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR--~~Ev~~~~~ 218 (510)
T 2ck3_A 143 REPMQTGIKAVDSLV--PIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQK--RSTVAQLVK 218 (510)
T ss_dssp CSBCCCSCHHHHHHS--CCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCC--HHHHHHHHH
T ss_pred Cccccccceeecccc--ccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCC--cHHHHHHHH
Confidence 457999999999987 577999999999999999999765554433200000 02335777765433 444555444
Q ss_pred HcCCCccccccc-EEEEecCC-HH-HHHH---HHHHHHHHhhcCCc-eEEEEcccccchh
Q 047388 183 RFGMDPGAVLDN-IIYARAYT-YE-HQYN---LLLGLAAKMSEEPF-RLLIVDSVIALFR 235 (352)
Q Consensus 183 ~~~~~~~~~~~~-i~~~~~~~-~~-~~~~---~l~~l~~~l~~~~~-~lvvIDsl~~l~~ 235 (352)
.+.- ...+++ +.+....+ +. .... .-..+.+.+...+- -++++||++.+..
T Consensus 219 ~~~~--~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~ 276 (510)
T 2ck3_A 219 RLTD--ADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAV 276 (510)
T ss_dssp HHHH--TTCGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHH
T ss_pred HHHh--cCCcccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHHH
Confidence 3310 122344 33333222 11 1111 11123344444444 4667899987754
No 231
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.86 E-value=0.00056 Score=58.51 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=22.6
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
++|+++.|.|++|||||||+..++..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999977654
No 232
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.84 E-value=0.00065 Score=57.01 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=24.7
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
|.+.+.++.|+|+|||||||++..++..
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5677889999999999999999988764
No 233
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=96.81 E-value=0.0088 Score=55.21 Aligned_cols=49 Identities=18% Similarity=0.107 Sum_probs=39.5
Q ss_pred hhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 114 ALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 114 ~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
.|+.++.+. .-.++.+.|..|+||||++.++|...+. .+.+|+.+|++.
T Consensus 6 ~l~~~l~~~--~~~i~~~sgkGGvGKTt~a~~lA~~la~------~g~~vllid~D~ 54 (334)
T 3iqw_A 6 TLQSILDQR--SLRWIFVGGKGGVGKTTTSCSLAIQLAK------VRRSVLLLSTDP 54 (334)
T ss_dssp SSHHHHHCT--TCCEEEEECSTTSSHHHHHHHHHHHHTT------SSSCEEEEECCS
T ss_pred cHHHHhcCC--CeEEEEEeCCCCccHHHHHHHHHHHHHh------CCCcEEEEECCC
Confidence 455556432 3468899999999999999999988876 688999999984
No 234
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.81 E-value=0.00069 Score=62.07 Aligned_cols=45 Identities=20% Similarity=0.154 Sum_probs=32.9
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~ 171 (352)
+++|+++.|.|++|||||||+..++..... ..| ...+.|+..+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~~G--~~~v~~v~qd~~ 131 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--WDH--HPRVDLVTTDGF 131 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--STT--CCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--cCC--CCeEEEEecCcc
Confidence 689999999999999999999977654332 111 145777776544
No 235
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.81 E-value=0.0014 Score=59.17 Aligned_cols=26 Identities=27% Similarity=0.143 Sum_probs=22.5
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
..+.++.|+|+|||||||++..++..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999988754
No 236
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.80 E-value=0.00012 Score=75.71 Aligned_cols=120 Identities=17% Similarity=0.153 Sum_probs=61.7
Q ss_pred cCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEe
Q 047388 120 GGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYAR 199 (352)
Q Consensus 120 ~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~ 199 (352)
.-|++++..++|+||||+|||+|+..++..... +.++++...-... ..|
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~---------~~i~v~~~~l~~~--------~~g-------------- 553 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA---------NFISIKGPELLTM--------WFG-------------- 553 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC---------CCCCCCCSSSTTC--------CTT--------------
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC---------CEEEEechHhhhh--------hcC--------------
Confidence 347889999999999999999999988876422 2333332221100 000
Q ss_pred cCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcc-hHHHHHHHHHHHHHHHHHHHHhCcEEEEEccc
Q 047388 200 AYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGE-LADRQQKLGQMLSRLTKISEEFNVAVYMTNQV 275 (352)
Q Consensus 200 ~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~-~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~ 275 (352)
........++. ......+.++++|++..+....-...++ .....+.+..++..|..+....++.||.+++.
T Consensus 554 -~~~~~i~~~f~----~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~ 625 (806)
T 1ypw_A 554 -ESEANVREIFD----KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 625 (806)
T ss_dssp -TSSHHHHHHHH----HHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBS
T ss_pred -ccHHHHHHHHH----HHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCC
Confidence 00111122222 2223357899999998876432111111 11122334555555555555567777776654
No 237
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.79 E-value=0.0058 Score=60.31 Aligned_cols=98 Identities=15% Similarity=0.147 Sum_probs=55.0
Q ss_pred CCcEEEEecCCCCChhHHHHHHHH--HhcCCCccCCCCCeEEEEeCCCCC--Ch-hhHHHHHHHcCCCcc-cccccEEEE
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCV--CTQLPTNMRGGNGKVAYIDTEGTF--RP-DRIVPIAERFGMDPG-AVLDNIIYA 198 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~--~~~~~~~~gg~~~~vl~i~~e~~~--~~-~rl~~~~~~~~~~~~-~~~~~i~~~ 198 (352)
...++.|+|..|+||||||.+++. ..... ..-..++|++..... +. .-+..+++.++.... ....+ .
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~---~ 223 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIG----INYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPS---V 223 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBT----TTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCC---C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHh----ccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccc---c
Confidence 457999999999999999998774 11111 133578899876542 22 334556666664321 00010 0
Q ss_pred ecCCHHHHHHHHHHHHHHhhcCCceEEEEccccc
Q 047388 199 RAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIA 232 (352)
Q Consensus 199 ~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~ 232 (352)
...+.. .+...+...+...+--+||+|.+..
T Consensus 224 ~~~~~~---~l~~~l~~~L~~~kr~LlVLDdv~~ 254 (549)
T 2a5y_B 224 EHVTSV---VLKRMICNALIDRPNTLFVFDDVVQ 254 (549)
T ss_dssp TTCCHH---HHHHHHHHHHTTSTTEEEEEEEECC
T ss_pred ccccHH---HHHHHHHHHHcCCCcEEEEEECCCC
Confidence 111122 2233444455443356899998754
No 238
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.78 E-value=0.0057 Score=56.17 Aligned_cols=38 Identities=18% Similarity=0.125 Sum_probs=34.4
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
.++.+.|..|+||||++.++|...+. .+.+|+.+|++.
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~------~G~rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMAR------SGKKTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH------TTCCEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHH------CCCcEEEEeCCC
Confidence 68889999999999999999998876 688999999985
No 239
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.78 E-value=0.00075 Score=57.34 Aligned_cols=29 Identities=17% Similarity=0.060 Sum_probs=23.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+++|.++.|+|+|||||||++..++...
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35688999999999999999999887653
No 240
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.77 E-value=0.00076 Score=55.81 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=22.7
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.+|.++.|+|+|||||||++..++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 46889999999999999999987653
No 241
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.76 E-value=0.009 Score=54.79 Aligned_cols=22 Identities=27% Similarity=0.125 Sum_probs=19.6
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.+.|+||||+|||+++..++..
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4799999999999999988665
No 242
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.75 E-value=0.0056 Score=53.30 Aligned_cols=44 Identities=9% Similarity=0.117 Sum_probs=28.4
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
.|+.+.+.|++|||||+++..++......... +.+.++++....
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-~~~~~~l~~~p~ 118 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-AAECNIVVTQPR 118 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC-GGGCEEEEEESS
T ss_pred cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC-CCceEEEEeccc
Confidence 46899999999999998776665543321100 013367776654
No 243
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.73 E-value=0.0015 Score=62.35 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=33.1
Q ss_pred hHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeC
Q 047388 115 LDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDT 168 (352)
Q Consensus 115 LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~ 168 (352)
|..++ ..+|+++.|+||+|||||||+..++..... ..+.++++..
T Consensus 159 L~~l~---~~~ggii~I~GpnGSGKTTlL~allg~l~~------~~g~I~~~ed 203 (418)
T 1p9r_A 159 FRRLI---KRPHGIILVTGPTGSGKSTTLYAGLQELNS------SERNILTVED 203 (418)
T ss_dssp HHHHH---TSSSEEEEEECSTTSCHHHHHHHHHHHHCC------TTSCEEEEES
T ss_pred HHHHH---HhcCCeEEEECCCCCCHHHHHHHHHhhcCC------CCCEEEEecc
Confidence 44444 368999999999999999999987665432 3456776653
No 244
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.73 E-value=0.0016 Score=55.26 Aligned_cols=37 Identities=19% Similarity=0.055 Sum_probs=30.1
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
..+.|+|++|+|||+|+..++..... .+.+++|++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~------~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK------RNVSSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT------TTCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEEEhH
Confidence 57899999999999999988876654 46678888653
No 245
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.0048 Score=56.49 Aligned_cols=106 Identities=12% Similarity=-0.022 Sum_probs=58.9
Q ss_pred hHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCC-CCeEEEEeCCCCCCh-hhHHHHHHHcCCCccccc
Q 047388 115 LDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG-NGKVAYIDTEGTFRP-DRIVPIAERFGMDPGAVL 192 (352)
Q Consensus 115 LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~-~~~vl~i~~e~~~~~-~rl~~~~~~~~~~~~~~~ 192 (352)
|...+.+| ++..+.|+||||+|||+++..++.........++. .-.++|+++....++ ..+..+++++.-.
T Consensus 36 L~~~i~~~--~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~----- 108 (318)
T 3te6_A 36 IYDSLMSS--QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKE----- 108 (318)
T ss_dssp HHHHHHTT--CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCC-----
T ss_pred HHHHhcCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCC-----
Confidence 44455454 56678999999999999999888766432111111 347889987654343 3345566655211
Q ss_pred ccEEEEecCCHHHHHHHHHHHHHHh--hcCCceEEEEcccccch
Q 047388 193 DNIIYARAYTYEHQYNLLLGLAAKM--SEEPFRLLIVDSVIALF 234 (352)
Q Consensus 193 ~~i~~~~~~~~~~~~~~l~~l~~~l--~~~~~~lvvIDsl~~l~ 234 (352)
+. ....... .+..+...+ ....+-+|++|++..+.
T Consensus 109 -~~--~~~~~~~----~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 109 -NL--CGDISLE----ALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp -C----CCCCHH----HHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred -CC--CchHHHH----HHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 11 1111122 222222222 23456788999998774
No 246
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.00059 Score=65.96 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=24.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|+++.|.||+|||||||+..++..
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3679999999999999999999977654
No 247
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.71 E-value=0.012 Score=54.42 Aligned_cols=25 Identities=24% Similarity=0.097 Sum_probs=21.7
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhc
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQ 151 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~ 151 (352)
..+.|+||+|+|||+++..++....
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999998877654
No 248
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.71 E-value=0.005 Score=55.80 Aligned_cols=22 Identities=27% Similarity=0.080 Sum_probs=20.1
Q ss_pred EEEecCCCCChhHHHHHHHHHh
Q 047388 129 TEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la~~~ 150 (352)
+.|+||+|+|||+++..++...
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999888764
No 249
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.70 E-value=0.00079 Score=56.57 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=21.5
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHh
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
|.++.|.|||||||||++..++...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5789999999999999999777543
No 250
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.68 E-value=0.00074 Score=56.70 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=20.9
Q ss_pred CcEEEEecCCCCChhHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
|+++.|+|+|||||||++..++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 67899999999999999998864
No 251
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.68 E-value=0.0014 Score=60.77 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=32.3
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
-+.+|.++.|.|+||+|||||+..++..... .++++.+++.+
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~------~~g~v~i~~~d 92 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLTA------AGHKVAVLAVD 92 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHHH------TTCCEEEEEEC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhhhh------CCCEEEEEEEc
Confidence 3567999999999999999999988765433 45667766543
No 252
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.67 E-value=0.011 Score=53.74 Aligned_cols=40 Identities=30% Similarity=0.328 Sum_probs=33.9
Q ss_pred CCcEEEEecC-CCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 125 TGAITEAFGE-FRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 125 ~G~i~~I~G~-~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
.+.++.|++. +|+||||++.++|...+. .+.+|+.||.+.
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~------~G~rVLLID~D~ 143 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQ------SDQKVLFIDADL 143 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHH------TTCCEEEEECCT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHh------CCCcEEEEECCC
Confidence 4567888875 899999999999998876 678999999885
No 253
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.67 E-value=0.00097 Score=56.87 Aligned_cols=28 Identities=32% Similarity=0.163 Sum_probs=24.2
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
--+++|.++.|+|+|||||||++..++.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999997753
No 254
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=96.67 E-value=0.002 Score=45.96 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=47.4
Q ss_pred hhhcHHHHHhCCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHH
Q 047388 27 LFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAE 85 (352)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 85 (352)
+.++|+. .+|++.....|+++||.|+.+++..+..+|.++.++....+.+|.+...
T Consensus 14 l~~~Ie~---L~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~ 69 (79)
T 3gfk_B 14 LEMTIEE---LDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLE 69 (79)
T ss_dssp GGCBGGG---SCCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHH
T ss_pred hcCcHHH---hCCCHHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHHH
Confidence 3445544 5899999999999999999999999999999999999887777765544
No 255
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.66 E-value=0.0084 Score=53.33 Aligned_cols=107 Identities=17% Similarity=0.138 Sum_probs=61.3
Q ss_pred HHHHHHHHcCCCchhhhhcCChhhHHhhh--CCCHHHHHHHHHHHHHHhhcCCCchhhhHHhh-----------------
Q 047388 42 GDVKKLQDAGIYTCNGLMMHTKKHLTGIK--GLSEAKVEKICEAAEKIVNFGYITGSDALLRR----------------- 102 (352)
Q Consensus 42 ~~~~~l~~~g~~t~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 102 (352)
..++-+-++|+.+-++++..++..-...+ .-....+.+++..++.... .-.++.+.....
T Consensus 3 ~mVqw~~d~~i~~e~~~~~~~~d~~~a~l~~~~~~~~vk~~~~m~r~~~~-~~~s~~~~i~~~~~~~~~~~n~i~~~l~~ 81 (267)
T 1u0j_A 3 ELVGWLVDKGITSEKQWIQEDQASYISFNAASNSRSQIKAALDNAGKIMS-LTKTAPDYLVGQQPVEDISSNRIYKILEL 81 (267)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-HHCCHHHHHSCSSCCSCGGGCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHhcCHHHHHHHhhcccchhHHHHHHHHHHHHHH-ccCCHHHHhcccCCCCCCchHHHHHHHHH
Confidence 45677889999999998866665333222 2234445555555554431 111222221110
Q ss_pred hcccccccCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 103 KAVIKITTGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 103 ~~~~~i~TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
.....+.. ...|...+.|..++...+.|+||||+|||.|+..+|...
T Consensus 82 qg~~~~~~-~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 82 NGYDPQYA-ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCHHHH-HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCHHHH-HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 11111111 112455565655777889999999999999999887653
No 256
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.65 E-value=0.01 Score=57.02 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.4
Q ss_pred cEEEEecCCCCChhHHHHHHHHH
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
..+.|+||||+|||+++..++..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999988765
No 257
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.64 E-value=0.0092 Score=58.76 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=30.7
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
+-=++|+|.+|||||+++..++..++..... ..-+++.||..+
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP--~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTP--SEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCT--TTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCC--cceEEEEeCCCh
Confidence 4457999999999999999988876642110 234566677664
No 258
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.63 E-value=0.00095 Score=55.00 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=21.7
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.|.++.|+|+|||||||++..++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999987654
No 259
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=96.57 E-value=0.0056 Score=43.06 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=46.1
Q ss_pred HhCCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHHH
Q 047388 35 ISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEK 86 (352)
Q Consensus 35 ~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 86 (352)
...+|++.....|+++||+|+.|++..+..+|.++.++..+.+.++.+...+
T Consensus 12 e~L~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~ 63 (73)
T 1z3e_B 12 EELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE 63 (73)
T ss_dssp GGSCCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4468999999999999999999999999999999999999888777665543
No 260
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.54 E-value=0.0013 Score=56.00 Aligned_cols=28 Identities=14% Similarity=-0.002 Sum_probs=24.3
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
..+|.++.|+|+|||||||++..++...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578899999999999999999887653
No 261
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.51 E-value=0.0015 Score=61.35 Aligned_cols=29 Identities=31% Similarity=0.143 Sum_probs=26.1
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-++++|+++.|.||||+|||||+..++..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 38999999999999999999999987753
No 262
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.51 E-value=0.0012 Score=61.66 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=29.0
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDT 168 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~ 168 (352)
+++|+++.|+|++|||||||+..++.. .+ ...+.+.++.
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~--~~-----~~~g~I~ie~ 210 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQE--IP-----FDQRLITIED 210 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTT--SC-----TTSCEEEEES
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhc--CC-----CCceEEEECC
Confidence 568999999999999999999976543 22 2345566653
No 263
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.50 E-value=0.0018 Score=55.54 Aligned_cols=41 Identities=22% Similarity=0.030 Sum_probs=30.6
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDT 168 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~ 168 (352)
+++|.++.|.|++||||||++..++...... .+.++++++.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~-----~g~~~~~~~~ 62 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD-----RRVHAYRLDG 62 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH-----HCCCEEEECH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc-----cCCcEEEECC
Confidence 5678999999999999999999887654310 2334777763
No 264
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.50 E-value=0.0016 Score=55.50 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=23.2
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.+|.++.|+||||+|||||+..++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 36899999999999999999988765
No 265
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.47 E-value=0.022 Score=50.87 Aligned_cols=41 Identities=20% Similarity=0.123 Sum_probs=34.0
Q ss_pred CCcEEEEecC-CCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC
Q 047388 125 TGAITEAFGE-FRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 125 ~G~i~~I~G~-~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~ 171 (352)
...++.|+++ +|+||||++.++|...+. .+.+|++||.+..
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~------~G~rVLLID~D~~ 122 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQ------AGYKTLIVDGDMR 122 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHH------TTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHh------CCCeEEEEeCCCC
Confidence 4567777765 899999999999998876 6789999999853
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.46 E-value=0.0017 Score=53.72 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.6
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
+.++.|+|+|||||||++..++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999988765
No 267
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.46 E-value=0.012 Score=54.56 Aligned_cols=42 Identities=19% Similarity=0.060 Sum_probs=36.3
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
-+...++.+.|..|+||||++.++|...+. .+.+|+.+|++.
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~------~G~rVLlvD~D~ 64 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAE------KGLKVVIVSTDP 64 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHH------SSCCEEEEECCT
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHH------CCCeEEEEeCCC
Confidence 355678888999999999999999988876 688999999985
No 268
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.46 E-value=0.019 Score=50.60 Aligned_cols=37 Identities=30% Similarity=0.276 Sum_probs=31.0
Q ss_pred EEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
|....+..|+||||++.++|...+. .+.+|+++|.+.
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~------~g~~VlliD~D~ 41 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQ------LGHDVTIVDADI 41 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHH------TTCCEEEEECCC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHh------CCCcEEEEECCC
Confidence 4455788899999999999988776 578999999875
No 269
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=96.46 E-value=0.0066 Score=43.96 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=49.6
Q ss_pred chhhhcHHHHHhCCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHHH
Q 047388 25 EDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEK 86 (352)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 86 (352)
..+.++|+.| +|++....-|+++||.|+.+++..+..+|.++.+++.+.+.+|.+...+
T Consensus 8 ~~l~~~I~~L---~LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~ 66 (86)
T 3k4g_A 8 PILLRPVDDL---ELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLAS 66 (86)
T ss_dssp GGGGSBGGGG---CCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHT
T ss_pred HHHhCcHHHh---CCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHH
Confidence 3345566554 8999999999999999999999999999999999999888777665543
No 270
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.45 E-value=0.012 Score=53.43 Aligned_cols=25 Identities=32% Similarity=0.215 Sum_probs=21.1
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHh
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
...+.|+||||+|||+++..++...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999887653
No 271
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.43 E-value=0.011 Score=54.74 Aligned_cols=42 Identities=17% Similarity=0.067 Sum_probs=33.3
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
...|.++.|+|+||+|||||+..++..... .++++..++.+.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~------~~~~v~v~~~d~ 94 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIR------EGLKVAVIAVDP 94 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHH------TTCCEEEEEECC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHh------cCCeEEEEeecC
Confidence 356889999999999999999988876554 466777777653
No 272
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.42 E-value=0.01 Score=55.11 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=31.9
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
.-++.|+|.||+|||||+..++..... .+.+|..++.+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~------~g~kV~vi~~Dp 117 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIE------RGHRVAVLAVDP 117 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHh------CCCceEEEecCC
Confidence 458999999999999999999887654 567888888763
No 273
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.40 E-value=0.027 Score=51.25 Aligned_cols=24 Identities=21% Similarity=-0.015 Sum_probs=21.2
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.-.+.++||+|+|||+++..++..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999988764
No 274
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.40 E-value=0.0018 Score=56.83 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=22.2
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
+++++.|.|+|||||||++..++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999988744
No 275
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.38 E-value=0.0018 Score=54.81 Aligned_cols=25 Identities=24% Similarity=0.109 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHh
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
|+++.|+|++|+|||||+..++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 6889999999999999999877654
No 276
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.38 E-value=0.0022 Score=57.00 Aligned_cols=38 Identities=16% Similarity=0.081 Sum_probs=28.1
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeC
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDT 168 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~ 168 (352)
++.++.|+|+|||||||++..++..... .+..+++++.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~------~g~~~i~~~~ 40 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSK------NNIDVIVLGS 40 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH------TTCCEEEECT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHh------CCCEEEEECc
Confidence 4668999999999999999988865332 2345555554
No 277
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.38 E-value=0.0018 Score=57.24 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=28.2
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
..+.++.|+|+|||||||++..++... +..+++++.+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l---------~~~~~~~~~D 66 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF---------QGNIVIIDGD 66 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT---------TTCCEEECGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc---------CCCcEEEecH
Confidence 456799999999999999999887642 2245666665
No 278
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.36 E-value=0.0032 Score=52.48 Aligned_cols=34 Identities=15% Similarity=-0.011 Sum_probs=26.3
Q ss_pred EEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEe
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYID 167 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~ 167 (352)
++.|.|+|||||||++..++..... .+..+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~------~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN------QGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT------TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh------cCceEEEEE
Confidence 6899999999999999988775432 344567775
No 279
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.36 E-value=0.002 Score=56.96 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=23.4
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
++|.++.|.|++||||||++..++..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999999999988744
No 280
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=96.35 E-value=0.084 Score=42.99 Aligned_cols=134 Identities=9% Similarity=-0.025 Sum_probs=71.6
Q ss_pred cccccCChhhHHhh-cCCCCCCcEEEEec-CCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHH
Q 047388 106 IKITTGSQALDELL-GGGIETGAITEAFG-EFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAER 183 (352)
Q Consensus 106 ~~i~TG~~~LD~~L-~GGl~~G~i~~I~G-~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 183 (352)
..++.|.+.+|.-+ +||++.|.++||.. .+|.|=..|+.-++..... ...++.++||........ .....
T Consensus 23 ~~~p~~~~~~~~~~~~~~~~~G~l~Ell~~~~g~gel~LL~P~La~l~~----~~~~r~vlwI~Pp~~l~~----~~L~~ 94 (161)
T 1oft_A 23 NGAPLLDDVIDSPSSASIEEPAAFSELSLSGLPGHCLTLLAPILRELSE----EQDARWLTLIAPPASLTH----EWLRR 94 (161)
T ss_dssp --------------------CCSEEEEEEESCHHHHHHHHHHHHHHHHT----CSSSSEEEEESCCTTSCH----HHHHH
T ss_pred ccCCCCcccccccCCCCCCCCcceEEEccCCCcHHHHHHHHHHHHHhcc----cccCccEEEECCCCCCCH----HHHHH
Confidence 45799999999877 78999999999984 5677766555544443221 013678999988664333 35667
Q ss_pred cCCCcccccccEEEEecCCHHHHHHHHHHHHHHhhcCCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHH
Q 047388 184 FGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISE 263 (352)
Q Consensus 184 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~l~~~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~ 263 (352)
.|+++ +++.+++..+..+..- .+++.++...+..||.. +..+ +. .-.+.|.--|+
T Consensus 95 ~Gl~~----~rll~v~~~~~~daLw---a~EqALrsG~~~aVl~W-l~~l---------~~--------~~~RRLqlAAe 149 (161)
T 1oft_A 95 AGLNR----ERILLLQAKDNAAALA---LSCEALRLGRSHTVVSW-LEPL---------SR--------AARKQLSRAAQ 149 (161)
T ss_dssp TTCCG----GGEEEECCSSTTHHHH---HHHHHHHTTCEEEEEEC-CSSC---------CH--------HHHHHHHHHHH
T ss_pred cCCCH----HHEEEEECCChHHHHH---HHHHHHhcCCccEEEEC-CCcC---------Ch--------HHHHHHHHHHH
Confidence 89998 7888888876654443 34456666677888765 2221 11 22455666666
Q ss_pred HhCcEEEEE
Q 047388 264 EFNVAVYMT 272 (352)
Q Consensus 264 ~~~~~viv~ 272 (352)
.-++..+++
T Consensus 150 ~g~~~~fll 158 (161)
T 1oft_A 150 LGQAQSLNI 158 (161)
T ss_dssp HTTCEEEEE
T ss_pred hCCCeEEEe
Confidence 666666654
No 281
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.34 E-value=0.0017 Score=54.18 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=22.1
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
+|.++.|+|+|||||||++..++..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999988754
No 282
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.33 E-value=0.0023 Score=53.15 Aligned_cols=26 Identities=23% Similarity=0.426 Sum_probs=21.8
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
+.+| ++.|+|++||||||++..++..
T Consensus 24 ~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 4466 9999999999999999876553
No 283
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.30 E-value=0.0022 Score=53.46 Aligned_cols=25 Identities=12% Similarity=-0.024 Sum_probs=22.0
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHh
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
|.++.|+|+|||||||++..++...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999887643
No 284
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.29 E-value=0.17 Score=40.21 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=19.8
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+.|+|++|+|||+|+..++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999887653
No 285
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.29 E-value=0.014 Score=49.16 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=50.8
Q ss_pred EEEEe-cCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCHHHH
Q 047388 128 ITEAF-GEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQ 206 (352)
Q Consensus 128 i~~I~-G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 206 (352)
++.|+ +..|+||||++.++|..... .+.+|+++|.+.. ..+..+.. ... .++.+..... ..+
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~------~g~~vlliD~D~~---~~~~~~~~---~~~----~~~~~~~~~~-~~l 65 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSR------SGYNIAVVDTDPQ---MSLTNWSK---AGK----AAFDVFTAAS-EKD 65 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHH------TTCCEEEEECCTT---CHHHHHHT---TSC----CSSEEEECCS-HHH
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHH------CCCeEEEEECCCC---CCHHHHHh---cCC----CCCcEEecCc-HHH
Confidence 34444 77899999999999998876 6789999999743 22223322 222 2344444333 233
Q ss_pred HHHHHHHHHHhhcCCceEEEEcccccc
Q 047388 207 YNLLLGLAAKMSEEPFRLLIVDSVIAL 233 (352)
Q Consensus 207 ~~~l~~l~~~l~~~~~~lvvIDsl~~l 233 (352)
.+.+.. +. ...++||||....+
T Consensus 66 ~~~l~~----l~-~~yD~viiD~~~~~ 87 (206)
T 4dzz_A 66 VYGIRK----DL-ADYDFAIVDGAGSL 87 (206)
T ss_dssp HHTHHH----HT-TTSSEEEEECCSSS
T ss_pred HHHHHH----hc-CCCCEEEEECCCCC
Confidence 333322 22 25799999976543
No 286
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.28 E-value=0.0048 Score=52.28 Aligned_cols=27 Identities=26% Similarity=0.156 Sum_probs=23.2
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhc
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQ 151 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~ 151 (352)
+|.++.|.|+|||||||++..++....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999998887543
No 287
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.28 E-value=0.0022 Score=52.95 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=19.9
Q ss_pred cEEEEecCCCCChhHHHHHHHH
Q 047388 127 AITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~ 148 (352)
.++.|+|+|||||||++..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999998875
No 288
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.26 E-value=0.0037 Score=57.07 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=31.0
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhc-CCCccCCCCCeEEEEeC
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQ-LPTNMRGGNGKVAYIDT 168 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~-~~~~~gg~~~~vl~i~~ 168 (352)
+.-+.|+||||+|||+|+..++..+. . .+.+++|++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~------~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEK------KGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHH------SCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHh------cCCcEEEEEH
Confidence 67899999999999999998887766 4 4677888865
No 289
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.26 E-value=0.0023 Score=53.55 Aligned_cols=23 Identities=26% Similarity=0.154 Sum_probs=20.0
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
.+.|.||||||||||+..++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999887654
No 290
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.24 E-value=0.0029 Score=52.95 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=23.3
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.+++.++.|+|++||||||++..++..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456789999999999999999988754
No 291
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.24 E-value=0.0024 Score=52.35 Aligned_cols=23 Identities=17% Similarity=-0.042 Sum_probs=20.3
Q ss_pred cEEEEecCCCCChhHHHHHHHHH
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.++.|+|+|||||||++..++..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999988765
No 292
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.21 E-value=0.0094 Score=61.21 Aligned_cols=36 Identities=25% Similarity=0.180 Sum_probs=29.3
Q ss_pred EEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
.+.|+||||+|||+++..++..... .+.+.++++..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~------~~~~~i~i~~s 558 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFG------DEESMIRIDMS 558 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHS------CTTCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC------CCcceEEEech
Confidence 5899999999999999988876533 45678888764
No 293
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=96.20 E-value=0.021 Score=50.43 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=31.3
Q ss_pred EEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~ 171 (352)
|....+..|+||||++.++|...+. .+.+|+++|....
T Consensus 21 I~v~s~kGGvGKTT~a~nLA~~la~------~G~~VlliD~D~~ 58 (262)
T 2ph1_A 21 IAVMSGKGGVGKSTVTALLAVHYAR------QGKKVGILDADFL 58 (262)
T ss_dssp EEEECSSSCTTHHHHHHHHHHHHHH------TTCCEEEEECCSS
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHH------CCCeEEEEeCCCC
Confidence 4445678899999999999988776 6789999998854
No 294
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.18 E-value=0.0042 Score=55.54 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=21.8
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++| +.|+||||+|||+|+..++..
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHH
Confidence 34556 899999999999999988764
No 295
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.15 E-value=0.0052 Score=51.18 Aligned_cols=28 Identities=18% Similarity=0.001 Sum_probs=22.4
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
...-.++.|+|++|+|||||+..++...
T Consensus 3 ~~~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 3 KTMIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3445689999999999999999887654
No 296
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.14 E-value=0.0026 Score=51.96 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=17.9
Q ss_pred EEEEecCCCCChhHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTL 146 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~l 146 (352)
++.|+|+|||||||++..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999977
No 297
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.14 E-value=0.002 Score=56.04 Aligned_cols=26 Identities=19% Similarity=0.045 Sum_probs=23.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
..++|.++.|.|++||||||++..++
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFE 41 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999998664
No 298
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.12 E-value=0.003 Score=60.16 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=24.2
Q ss_pred CCCCCcE--EEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAI--TEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i--~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++|++ +.|+|+||+|||||+..++..
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 5889999 999999999999999977654
No 299
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.09 E-value=0.03 Score=48.34 Aligned_cols=36 Identities=25% Similarity=0.205 Sum_probs=29.9
Q ss_pred EEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 129 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
....+..|+||||++.++|...+. .+.+|+++|...
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~------~g~~VlliD~D~ 41 (237)
T 1g3q_A 6 SIVSGKGGTGKTTVTANLSVALGD------RGRKVLAVDGDL 41 (237)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHH------TTCCEEEEECCT
T ss_pred EEecCCCCCCHHHHHHHHHHHHHh------cCCeEEEEeCCC
Confidence 344567899999999999988776 578999999875
No 300
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.07 E-value=0.0063 Score=55.02 Aligned_cols=40 Identities=25% Similarity=0.130 Sum_probs=31.2
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
+...+.|+||||+|||+++..++..... .+.++++++...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~------~~~~~~~~~~~~ 85 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD------TEEAMIRIDMTE 85 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS------CGGGEEEEEGGG
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC------CCcceEEeeccc
Confidence 3457999999999999999988876543 456688887654
No 301
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.06 E-value=0.0036 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=21.8
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHh
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
+.++.|+|+|||||||++..++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999887653
No 302
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.05 E-value=0.0036 Score=51.91 Aligned_cols=26 Identities=23% Similarity=0.024 Sum_probs=22.5
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
..+.++.|+|+|||||||++..++..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988754
No 303
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.05 E-value=0.0034 Score=53.21 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=21.2
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
..++.|+|+|||||||++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988764
No 304
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.05 E-value=0.013 Score=60.97 Aligned_cols=38 Identities=26% Similarity=0.176 Sum_probs=30.3
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
..+.|+||||+|||+++..++..... .+...++++...
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~------~~~~~i~i~~~~ 626 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD------TEEAMIRIDMTE 626 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS------SGGGEEEECTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC------CCCcEEEEechh
Confidence 47899999999999999988876543 356788888654
No 305
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.04 E-value=0.0067 Score=50.24 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=28.5
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
.++.|+|++|||||||+..++..... .+.+|..+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~------~g~~v~~ik~~ 41 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR------EGWRVGTVKHH 41 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH------TTCCEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh------cCCeeeEEEeC
Confidence 47899999999999999988876543 45566666644
No 306
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.02 E-value=0.16 Score=41.27 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=20.0
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+.|+|++|+|||+|+..++...
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47899999999999999887653
No 307
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.01 E-value=0.0039 Score=52.23 Aligned_cols=25 Identities=20% Similarity=0.112 Sum_probs=22.2
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
++.++.|.|+|||||||++..++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999988754
No 308
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=95.99 E-value=0.053 Score=47.40 Aligned_cols=37 Identities=22% Similarity=0.102 Sum_probs=30.7
Q ss_pred EEEE-ecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 128 ITEA-FGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 128 i~~I-~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
++.| .+..|+||||++.++|...+. .+.+|+++|...
T Consensus 4 vi~v~s~kgGvGKTt~a~~LA~~la~------~g~~VlliD~D~ 41 (260)
T 3q9l_A 4 IIVVTSGKGGVGKTTSSAAIATGLAQ------KGKKTVVIDFAI 41 (260)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHH------TTCCEEEEECCC
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHh------CCCcEEEEECCC
Confidence 4444 677889999999999998876 678999999885
No 309
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.98 E-value=0.0038 Score=52.16 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=21.2
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
+.++.|.|+|||||||++..++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999988754
No 310
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=95.98 E-value=0.0042 Score=46.21 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=46.4
Q ss_pred HHhCCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHHH
Q 047388 34 LISQGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAEK 86 (352)
Q Consensus 34 l~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 86 (352)
+...+|++....-|+++||+|+.+++..+..+|.++.++..+.+..|.+...+
T Consensus 26 Ie~L~LSvRs~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~ 78 (98)
T 1coo_A 26 VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 78 (98)
T ss_dssp GGGGTCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34458999999999999999999999999999999999999888877765543
No 311
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.97 E-value=0.0038 Score=61.58 Aligned_cols=42 Identities=21% Similarity=0.125 Sum_probs=32.1
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCC-CeEEEEeCC
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGN-GKVAYIDTE 169 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~-~~vl~i~~e 169 (352)
-+++|+++.|+|+|||||||++..++..... .+ +.+.|++.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~------~~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME------MGGRCVTLLDGD 407 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT------TCSSCEEEESSH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc------cCCceEEEECCc
Confidence 3568999999999999999999988765433 22 356677764
No 312
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.96 E-value=0.005 Score=57.31 Aligned_cols=34 Identities=35% Similarity=0.441 Sum_probs=27.0
Q ss_pred cCChhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 110 TGSQALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 110 TG~~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
.|+..|...+ +|+++.|.|+||+|||||+..++.
T Consensus 204 ~gl~~L~~~~-----~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 204 DGLKPLEEAL-----TGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp BTHHHHHHHH-----TTSEEEEECCTTSSHHHHHHHHHC
T ss_pred cCHHHHHHhc-----CCCEEEEECCCCccHHHHHHHHhc
Confidence 3556666544 578999999999999999997764
No 313
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=95.96 E-value=0.033 Score=48.98 Aligned_cols=39 Identities=18% Similarity=0.020 Sum_probs=32.4
Q ss_pred CcEEEEe-cCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 126 GAITEAF-GEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 126 G~i~~I~-G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
+.++.|+ +..|+||||++.++|...+. .+.+|+++|.+.
T Consensus 6 ~~vI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~ 45 (257)
T 1wcv_1 6 VRRIALANQKGGVGKTTTAINLAAYLAR------LGKRVLLVDLDP 45 (257)
T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHHHHH------TTCCEEEEECCT
T ss_pred CEEEEEEeCCCCchHHHHHHHHHHHHHH------CCCCEEEEECCC
Confidence 4566665 67899999999999988776 678999999875
No 314
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.95 E-value=0.005 Score=52.33 Aligned_cols=28 Identities=25% Similarity=0.172 Sum_probs=24.1
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
..+|.++.|+|++||||||++..++...
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999888653
No 315
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.91 E-value=0.0044 Score=54.79 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.6
Q ss_pred cEEEEecCCCCChhHHHHHHHHH
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.++.|+|+||||||||+..++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 37899999999999999998865
No 316
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.90 E-value=0.024 Score=59.04 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=51.4
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCC-CCCeEEEEeCCCCCChhhHHHHHHHcCCCcccccccEEEEecCCHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRG-GNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYE 204 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg-~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~ 204 (352)
..-+.|+||||+|||+++..++........... .+..+++++...-.. +.. + . .
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-----------g~~---------~-~----g 245 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-----------GAK---------Y-R----G 245 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------------------------------
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-----------cCc---------c-c----h
Confidence 345789999999999999988876532100000 255677776532110 000 0 0 0
Q ss_pred HHHHHHHHHHHHhhc-CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcc
Q 047388 205 HQYNLLLGLAAKMSE-EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQ 274 (352)
Q Consensus 205 ~~~~~l~~l~~~l~~-~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h 274 (352)
+....+..+...+.. .++.+++||.+..+....-. .+ ...+.+.|+.+....++.+|.++.
T Consensus 246 ~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~-~g--------~~~~~~~L~~~l~~~~i~~I~at~ 307 (854)
T 1qvr_A 246 EFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA-EG--------AVDAGNMLKPALARGELRLIGATT 307 (854)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------------HHHHHTTCCCEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc-cc--------hHHHHHHHHHHHhCCCeEEEEecC
Confidence 111122222223333 35779999999888542110 00 013444556655666777776544
No 317
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.88 E-value=0.0044 Score=53.63 Aligned_cols=27 Identities=15% Similarity=0.073 Sum_probs=21.7
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
..++.++.|.|+|||||||++..++..
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 455678999999999999999988754
No 318
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.88 E-value=0.0048 Score=52.49 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.5
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
.+|.++.|+|++||||||++..++...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999888654
No 319
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.88 E-value=0.0049 Score=53.03 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.1
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
+.++.|+|++||||||++..++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988754
No 320
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.88 E-value=0.0037 Score=51.84 Aligned_cols=25 Identities=40% Similarity=0.381 Sum_probs=17.5
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
++.++.|+|+|||||||++..++..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999988754
No 321
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.87 E-value=0.0055 Score=59.92 Aligned_cols=39 Identities=31% Similarity=0.404 Sum_probs=28.5
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDT 168 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~ 168 (352)
++.|.++.|+||+||||||++..++.. .+ ...+++.+..
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~--i~-----~~~giitied 295 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMF--IP-----PDAKVVSIED 295 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGG--SC-----TTCCEEEEES
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhh--CC-----CCCCEEEEcC
Confidence 468999999999999999999966433 23 2345666643
No 322
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=95.87 E-value=0.017 Score=54.17 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=32.1
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeC
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDT 168 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~ 168 (352)
.++.+.|..|+||||++.++|...+. .+.+|+.+|+
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~------~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLAS------QGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHH------TTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCeEEEeC
Confidence 46788999999999999999988776 6889999999
No 323
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.87 E-value=0.005 Score=51.97 Aligned_cols=25 Identities=28% Similarity=0.236 Sum_probs=22.2
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
+|.++.|.|++||||||++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5779999999999999999988754
No 324
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.85 E-value=0.0051 Score=53.17 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=25.7
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
.-++...++.|.|||||||+|.|..++...
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456778899999999999999999888653
No 325
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.84 E-value=0.0047 Score=56.18 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=21.8
Q ss_pred CCCcEEEEecCCCCChhHHHHHHH
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la 147 (352)
..|+++.|.|+||+|||||+..++
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH
Confidence 458899999999999999999876
No 326
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.83 E-value=0.01 Score=55.93 Aligned_cols=40 Identities=23% Similarity=0.226 Sum_probs=29.8
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
..+.-+.|+|++|+|||+++..++..... .+..++++|..
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~~~~------~~~~~~~~D~~ 72 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLREYM------QGSRVIIIDPE 72 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEEESS
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHHHHH------CCCEEEEEeCC
Confidence 35667899999999999999988876554 34556666543
No 327
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.83 E-value=0.0055 Score=55.40 Aligned_cols=28 Identities=14% Similarity=-0.057 Sum_probs=23.7
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-.++.++.|+|++|||||||+..++...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999998776654
No 328
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.82 E-value=0.015 Score=53.59 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=21.4
Q ss_pred cEEEEecCCCCChhHHHHHHHHHh
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
+.+.|+||||+|||||+..++...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999999999888764
No 329
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.81 E-value=0.0057 Score=51.71 Aligned_cols=25 Identities=20% Similarity=0.066 Sum_probs=21.9
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.+.++.|+|+|||||||++..++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988764
No 330
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.80 E-value=0.0033 Score=52.85 Aligned_cols=25 Identities=24% Similarity=0.109 Sum_probs=22.0
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.+.++.|+|+|||||||++..++..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988764
No 331
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.78 E-value=0.0056 Score=52.60 Aligned_cols=25 Identities=20% Similarity=0.045 Sum_probs=22.0
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
+|-++.|.|+|||||||++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999988764
No 332
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.78 E-value=0.24 Score=39.15 Aligned_cols=22 Identities=23% Similarity=0.142 Sum_probs=19.4
Q ss_pred EEEecCCCCChhHHHHHHHHHh
Q 047388 129 TEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la~~~ 150 (352)
+.++|++|+|||+|+..++...
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999887653
No 333
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.77 E-value=0.0051 Score=52.23 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=18.8
Q ss_pred EEEEecCCCCChhHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~ 148 (352)
++.|+|++||||||++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999997753
No 334
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.77 E-value=0.24 Score=41.16 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=19.9
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+.|+|++|+|||+|+..+...-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999887653
No 335
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.77 E-value=0.0048 Score=59.74 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=23.6
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+++ +++.|.||+|||||||+..++..
T Consensus 26 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 26 DFDE-LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp ECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence 4678 99999999999999999977654
No 336
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.76 E-value=0.24 Score=39.28 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=19.7
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+.++|++|+|||+|+..++..-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999887653
No 337
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.70 E-value=0.08 Score=47.55 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=32.5
Q ss_pred CcEEEEec-CCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC
Q 047388 126 GAITEAFG-EFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 126 G~i~~I~G-~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~ 171 (352)
..++.|++ .+|.||||++.++|...+. .+.+|++||.+..
T Consensus 92 ~kvI~vts~kgG~GKTtva~nLA~~lA~------~G~rVLLID~D~~ 132 (286)
T 3la6_A 92 NNVLMMTGVSPSIGMTFVCANLAAVISQ------TNKRVLLIDCDMR 132 (286)
T ss_dssp CCEEEEEESSSSSSHHHHHHHHHHHHHT------TTCCEEEEECCTT
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHh------CCCCEEEEeccCC
Confidence 45565555 5899999999999998876 6789999999854
No 338
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.69 E-value=0.0041 Score=54.98 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=24.1
Q ss_pred CCCC---CcEEEEecCCCCChhHHHHHHHHH
Q 047388 122 GIET---GAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 122 Gl~~---G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.+ |+++.|+|++||||||++..++..
T Consensus 41 ~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 41 EVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred hhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3455 899999999999999999988764
No 339
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.68 E-value=0.0066 Score=52.86 Aligned_cols=29 Identities=21% Similarity=0.088 Sum_probs=25.0
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
...+|.++.|.|++||||||++..++...
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999887653
No 340
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.67 E-value=0.0095 Score=49.64 Aligned_cols=23 Identities=30% Similarity=0.150 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
++.|+|++||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999887654
No 341
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.66 E-value=0.072 Score=54.74 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=27.7
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDT 168 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~ 168 (352)
..|+.+.|.||+|||||+++-.++....... +.+..++++..
T Consensus 107 ~~~~~vii~gpTGSGKTtllp~ll~~~~~~~---~~g~~ilvl~P 148 (773)
T 2xau_A 107 QNNQIMVFVGETGSGKTTQIPQFVLFDEMPH---LENTQVACTQP 148 (773)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHCGG---GGTCEEEEEES
T ss_pred hCCCeEEEECCCCCCHHHHHHHHHHHhcccc---CCCceEEecCc
Confidence 4478999999999999997766654433210 01345776653
No 342
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.66 E-value=0.01 Score=52.44 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=29.3
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
.-+.|+|+||+|||+++..++..... .+.+.++++...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~------~~~~~~~v~~~~ 67 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSR------WQGPFISLNCAA 67 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTT------TTSCEEEEEGGG
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCc------cCCCeEEEecCC
Confidence 46889999999999999987754332 356788888654
No 343
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.66 E-value=0.036 Score=56.34 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=30.7
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
+..|..+.++||+|||||+.+...+...... .+.+++|+...
T Consensus 43 ~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~il~i~P~ 84 (715)
T 2va8_A 43 LLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-----NGGKAIYVTPL 84 (715)
T ss_dssp TTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-----SCSEEEEECSC
T ss_pred hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-----CCCeEEEEeCc
Confidence 3446789999999999999987666543321 35689988654
No 344
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.62 E-value=0.006 Score=51.62 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=19.1
Q ss_pred EEEEecCCCCChhHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~ 148 (352)
++.|+|++||||||++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999998865
No 345
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.61 E-value=0.011 Score=49.55 Aligned_cols=23 Identities=22% Similarity=0.070 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
++.|.|++||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999887654
No 346
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.61 E-value=0.0057 Score=50.48 Aligned_cols=22 Identities=32% Similarity=0.265 Sum_probs=19.8
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
++.|+|+|||||||++..++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6889999999999999988764
No 347
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.61 E-value=0.006 Score=50.69 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.4
Q ss_pred cEEEEecCCCCChhHHHHHHHHH
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.++.|+|+|||||||++..++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988764
No 348
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.61 E-value=0.0067 Score=54.25 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=20.3
Q ss_pred EEEEecCCCCChhHHHHHHHHHhc
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQ 151 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~ 151 (352)
.+.|+||||+|||||+..++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999998876543
No 349
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.61 E-value=0.23 Score=40.51 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=19.7
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+.|+|++|+|||+|+..++...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999887543
No 350
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.61 E-value=0.013 Score=53.92 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.4
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
+.+.++.|+||+|+|||+|+..+|..
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34569999999999999999988754
No 351
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.59 E-value=0.011 Score=54.75 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=30.0
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
+.+.++.|+|+||+|||||+..++..... .++++..+..+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~------~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE------RGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH------TTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh------cCCeEEEEeec
Confidence 45779999999999999999988765433 34566665544
No 352
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.55 E-value=0.0069 Score=50.98 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
++.|.|++||||||++..++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999988765
No 353
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.54 E-value=0.0078 Score=50.84 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=21.0
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
..++.|+|++||||||++..++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988754
No 354
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.53 E-value=0.097 Score=47.97 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=43.7
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCcc-----C----------CCCCeEEEEeCC---CCCChhhHHHHHHHcCCCc
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNM-----R----------GGNGKVAYIDTE---GTFRPDRIVPIAERFGMDP 188 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~-----g----------g~~~~vl~i~~e---~~~~~~rl~~~~~~~~~~~ 188 (352)
..+.++||+|+|||+++..++......... | +....+.+++.+ .......++.+.+.+...+
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~ 104 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHA 104 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSCC
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhcc
Confidence 469999999999999999998776532211 0 011346667665 2234455667666655443
Q ss_pred ccccccEEEEec
Q 047388 189 GAVLDNIIYARA 200 (352)
Q Consensus 189 ~~~~~~i~~~~~ 200 (352)
..--.++.+++.
T Consensus 105 ~~~~~kvviIde 116 (334)
T 1a5t_A 105 RLGGAKVVWVTD 116 (334)
T ss_dssp TTSSCEEEEESC
T ss_pred ccCCcEEEEECc
Confidence 211134555543
No 355
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.52 E-value=0.01 Score=53.80 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=35.5
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~ 171 (352)
..+.++.|+|..|+||||++.++|...+. .+.+|+.||....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~------~G~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI------LGKRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH------CCCeEEEEeCCCC
Confidence 35678888899999999999999998876 6789999998743
No 356
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.52 E-value=0.0075 Score=51.22 Aligned_cols=25 Identities=24% Similarity=0.137 Sum_probs=21.9
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.|..++|+||||+|||+|+..++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3677999999999999999988754
No 357
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.50 E-value=0.16 Score=41.11 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.5
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.|+|++|+|||+|+..++..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999988765
No 358
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.48 E-value=0.0077 Score=51.58 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=20.2
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
++.|.|||||||+|.|..++...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999888653
No 359
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.47 E-value=0.0059 Score=54.07 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.8
Q ss_pred EEEecCCCCChhHHHHHHHHHh
Q 047388 129 TEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la~~~ 150 (352)
+.|+||||+|||+++..++...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999888764
No 360
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.47 E-value=0.0074 Score=51.90 Aligned_cols=25 Identities=16% Similarity=-0.027 Sum_probs=21.8
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.+.++.|.|+|||||||++..++..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988765
No 361
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.44 E-value=0.0077 Score=50.11 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=20.9
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
..++.|+|+|||||||++..++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999988754
No 362
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.44 E-value=0.0064 Score=56.05 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=20.6
Q ss_pred EEEecCCCCChhHHHHHHHHHhc
Q 047388 129 TEAFGEFRSGKTQLAHTLCVCTQ 151 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la~~~~ 151 (352)
+.|+||||+|||+++..++....
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999998887654
No 363
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.40 E-value=0.0089 Score=50.32 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=19.4
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.++|+||||+|||||+..++..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999988654
No 364
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.40 E-value=0.0042 Score=52.86 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=20.5
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
++.|.|++||||||++..++...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999887654
No 365
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.38 E-value=0.0096 Score=50.83 Aligned_cols=22 Identities=18% Similarity=0.034 Sum_probs=19.3
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.+.|+|+|||||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988754
No 366
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.38 E-value=0.0078 Score=49.31 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=20.3
Q ss_pred cEEEEecCCCCChhHHHHHHHHH
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.++.|+|++||||||++..++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988764
No 367
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.37 E-value=0.0094 Score=52.26 Aligned_cols=25 Identities=20% Similarity=0.053 Sum_probs=21.8
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
++-++.|+|+|||||||++..++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988754
No 368
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.35 E-value=0.0095 Score=48.69 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=20.8
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-.++.|.|.+||||||++..++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988764
No 369
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.35 E-value=0.016 Score=49.35 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=21.0
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHh
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
..++.++|+||+|||++|..++...
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3489999999999999998876554
No 370
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.31 E-value=0.022 Score=49.94 Aligned_cols=40 Identities=30% Similarity=0.322 Sum_probs=32.6
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
.+.-++.+.|.+|+||||++.+++.... . +.+++.++.+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~------g~~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-D------NYKVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-T------TSCEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-C------CCeEEEEeCCC
Confidence 3457899999999999999999987655 2 56888888764
No 371
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.30 E-value=0.0044 Score=52.47 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=23.5
Q ss_pred CCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 122 GIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 122 Gl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+++|..+.|+|++|+|||||+..++.
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999987653
No 372
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.29 E-value=0.0099 Score=51.01 Aligned_cols=25 Identities=16% Similarity=-0.047 Sum_probs=21.9
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
+|-.+.|.|+|||||||++..++..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988765
No 373
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.27 E-value=0.0097 Score=50.82 Aligned_cols=22 Identities=14% Similarity=0.009 Sum_probs=19.2
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.+.|+|+|||||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988754
No 374
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.26 E-value=0.0073 Score=54.58 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=26.5
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~ 171 (352)
+-++.|+|++||||||++..++...-. .+..+.++++..-
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~------~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRR------EGVKAVSIEGDAF 44 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHH------HTCCEEEEEGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhh------cCCCeeEeecchh
Confidence 458999999999999999988754221 2344777887654
No 375
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.24 E-value=0.0064 Score=57.77 Aligned_cols=24 Identities=29% Similarity=0.227 Sum_probs=20.5
Q ss_pred CCcEEEEecCCCCChhHHHHHHHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
.+.++.|.|+||+|||||+..++.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 344999999999999999997654
No 376
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.22 E-value=0.037 Score=56.73 Aligned_cols=26 Identities=27% Similarity=0.167 Sum_probs=22.6
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
.+.-+.|+||||+|||+++..++...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 56678999999999999999888764
No 377
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.22 E-value=0.038 Score=56.63 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=27.3
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
..+.|+||||+|||+++..++... +...++++...
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l---------~~~~~~i~~s~ 523 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL---------GIELLRFDMSE 523 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH---------TCEEEEEEGGG
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh---------cCCEEEEechh
Confidence 368999999999999999887653 34677777543
No 378
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.22 E-value=0.3 Score=40.21 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=20.0
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+.|+|++|+|||+|+..++...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999887653
No 379
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.19 E-value=0.014 Score=52.43 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=26.6
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
+.-+.|+||||+|||+++..++... +.++++++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l---------~~~~~~i~~~ 84 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA---------NAPFIKVEAT 84 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH---------TCCEEEEEGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---------CCCEEEEcch
Confidence 3467899999999999999887654 2356677654
No 380
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.19 E-value=0.35 Score=38.94 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=19.6
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.|+|++|+|||+|+..++..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988765
No 381
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.19 E-value=0.12 Score=54.68 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=34.1
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRI 177 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl 177 (352)
..++.|+|+.|+|||||+.+++........ ...+++|++....++...+
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~---Fd~gV~WVsVs~~~d~~~I 198 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCK---MDFKIFWLNLKNCNSPETV 198 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHH---HSSCEEEEECCCSSSHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHh---CCCcEEEEEeCCCCCHHHH
Confidence 579999999999999999988743211000 2346899988766555443
No 382
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.18 E-value=0.011 Score=49.62 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.4
Q ss_pred CcEEEEecCCCCChhHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
..++.|+|++||||||++..++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998875
No 383
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.17 E-value=0.14 Score=42.02 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=20.1
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+.++|++|+|||+|+..++...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999988653
No 384
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.17 E-value=0.013 Score=51.04 Aligned_cols=27 Identities=19% Similarity=0.076 Sum_probs=23.0
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-++|.++.|+|++||||||++..++..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999987753
No 385
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.17 E-value=0.17 Score=41.73 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.7
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.|+|++|+|||+|+..++..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999988765
No 386
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.16 E-value=0.16 Score=40.53 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=18.9
Q ss_pred EEEecCCCCChhHHHHHHHHH
Q 047388 129 TEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la~~ 149 (352)
+.++|++|+|||+|+..++..
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988764
No 387
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.14 E-value=0.012 Score=48.02 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.6
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
++.|.|++||||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988764
No 388
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=95.13 E-value=0.026 Score=52.40 Aligned_cols=51 Identities=20% Similarity=0.154 Sum_probs=41.0
Q ss_pred hhhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhc--CCCccCCCCCeEEEEeCCCC
Q 047388 113 QALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQ--LPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 113 ~~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~--~~~~~gg~~~~vl~i~~e~~ 171 (352)
+.|+.++.. +...++...|..|+||||++.++|...+ . .+.+|+.+|++..
T Consensus 7 ~~l~~l~~~--~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~------~G~rVLLvD~D~~ 59 (354)
T 2woj_A 7 PNLHSLITS--TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQ------PNKQFLLISTDPA 59 (354)
T ss_dssp SSCHHHHTC--SSCCEEEEEESTTSSHHHHHHHHHHHHHHHC------TTSCEEEEECCSS
T ss_pred ccHHHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhc------CCCeEEEEECCCC
Confidence 346676643 2346888889999999999999999887 6 6889999999853
No 389
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.12 E-value=0.012 Score=55.04 Aligned_cols=45 Identities=9% Similarity=0.206 Sum_probs=31.4
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEccccc
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIA 277 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~ 277 (352)
.+|+++++|+.++.+.+ ..+ ..++..|+++.+ .|.+||+++|-..
T Consensus 302 ~~p~~lllDEpt~~LD~--------~~~----~~~~~~l~~l~~-~g~tvi~itH~~~ 346 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDT--------ENK----EKIASVLKELER-LNKVIVFITHDRE 346 (365)
T ss_dssp TTCCEEEEESCCTTSCH--------HHH----HHHHHHHHGGGG-SSSEEEEEESCHH
T ss_pred CCCCEEEEeCCCccCCH--------HHH----HHHHHHHHHHHh-CCCEEEEEecchH
Confidence 47899999988776432 222 366677777754 5899999999653
No 390
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.12 E-value=0.22 Score=40.49 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.5
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.|+|++|+|||+|+..++..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988755
No 391
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.12 E-value=0.011 Score=51.51 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.0
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.-++.|.|+|||||||++..++..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988754
No 392
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.10 E-value=0.022 Score=52.09 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=28.2
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
.++.|.|++|+|||+|+.+++.... ..++|++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~---------~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN---------LPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT---------CCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC---------CCEEEEEchh
Confidence 5999999999999999998876532 2478888653
No 393
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.10 E-value=0.25 Score=40.76 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=19.9
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+.|+|++|+|||+|+..++..-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999887643
No 394
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.08 E-value=0.013 Score=50.13 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.4
Q ss_pred CcEEEEecCCCCChhHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
+-++.|+|++||||||++..++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998764
No 395
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.08 E-value=0.43 Score=38.35 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=19.3
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.|+|++|+|||+|+..++..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988754
No 396
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.06 E-value=0.013 Score=57.78 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=23.6
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
+|.++.|+||||+|||+|+..++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999887654
No 397
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.05 E-value=0.019 Score=50.69 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=32.4
Q ss_pred EEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~ 171 (352)
++.|.|..|+||||++.++|...+. .+.+|+.+|.+..
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~------~G~~VlliD~D~q 40 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHA------MGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHT------TTCCEEEEEECTT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHH------CCCcEEEEcCCCC
Confidence 5666899999999999999988876 6789999998743
No 398
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.05 E-value=0.023 Score=48.79 Aligned_cols=37 Identities=19% Similarity=0.063 Sum_probs=28.2
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEE
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYI 166 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i 166 (352)
.+|.++.|.|++||||||++..++..... .+.+|+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~------~~~~v~~~ 40 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE------RGIEVQLT 40 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT------TTCCEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH------cCCCcccc
Confidence 35889999999999999999988765543 44566544
No 399
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.01 E-value=0.017 Score=55.52 Aligned_cols=30 Identities=23% Similarity=0.138 Sum_probs=24.8
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
.|..++.-++|+||||+|||+++..++...
T Consensus 58 ~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 58 SKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 455566678999999999999999888764
No 400
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.00 E-value=0.019 Score=52.66 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=20.0
Q ss_pred EEEecCCCCChhHHHHHHHHHh
Q 047388 129 TEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la~~~ 150 (352)
+.|+||||+|||+++..++...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999888764
No 401
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.00 E-value=0.0071 Score=50.20 Aligned_cols=39 Identities=23% Similarity=0.141 Sum_probs=25.4
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
+++.|+|++|||||||+..++...... |.....+.++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~----g~~~G~I~~dg~ 41 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER----GLRVAVVKRHAH 41 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT----TCCEEEEEC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc----CCceEEEEEcCc
Confidence 578999999999999999877654421 012345565544
No 402
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.00 E-value=0.011 Score=53.78 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.0
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
+..|+++.|.|+||+|||||+..++.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHST
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcc
Confidence 34588999999999999999996653
No 403
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.96 E-value=0.013 Score=51.50 Aligned_cols=44 Identities=11% Similarity=0.059 Sum_probs=29.6
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~ 171 (352)
-++.|+|++||||||++..++...-.+.-. ..+..++++++..-
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d-~~~~~~~~i~~D~~ 66 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVD-YRQKQVVILSQDSF 66 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSC-GGGCSEEEEEGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhccc-ccCCceEEEecCcc
Confidence 489999999999999999887643221000 01345777887653
No 404
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.94 E-value=0.033 Score=51.60 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=40.5
Q ss_pred hhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhc--CCCccCCCCCeEEEEeCCC
Q 047388 114 ALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQ--LPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 114 ~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~--~~~~~gg~~~~vl~i~~e~ 170 (352)
.|+.++.. +.-.++.+.|..|+||||++.++|...+ . .+.+|+.+|+..
T Consensus 8 ~L~~~l~~--~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~------~g~~vllid~D~ 58 (348)
T 3io3_A 8 TLESIVQH--DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQ------PNEQFLLISTDP 58 (348)
T ss_dssp SSHHHHTC--TTCSEEEEECSTTSSHHHHHHHHHHHHHHHC------TTSCEEEEECCS
T ss_pred hHHHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhc------CCCeEEEEECCC
Confidence 46666753 2347999999999999999999998887 6 688999999983
No 405
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.93 E-value=0.0044 Score=56.47 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=22.5
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
+.+|+++.|.|+||+|||||+..++.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcc
Confidence 45689999999999999999997653
No 406
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.89 E-value=0.017 Score=50.14 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=21.7
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.+..+.|.|++||||||++..++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988765
No 407
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.89 E-value=0.33 Score=39.88 Aligned_cols=23 Identities=22% Similarity=0.098 Sum_probs=20.0
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+.|+|++|+|||+|+..++...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999887643
No 408
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.88 E-value=0.026 Score=52.45 Aligned_cols=26 Identities=35% Similarity=0.224 Sum_probs=22.0
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
++.-++|+||||+|||+++..++...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45568999999999999999887653
No 409
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.87 E-value=0.018 Score=46.46 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.3
Q ss_pred cEEEEecCCCCChhHHHHHHHH
Q 047388 127 AITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~ 148 (352)
.++.|+||+|+|||+++..+..
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999886654
No 410
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.86 E-value=0.02 Score=56.89 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=41.3
Q ss_pred hhhHHhhcC-CCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 113 QALDELLGG-GIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 113 ~~LD~~L~G-Gl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
+.||.++++ +-....++.+.|.+|+||||++.++|...+. .+.+|+++|+..
T Consensus 313 ~~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~------~g~~vllvD~Dp 365 (589)
T 1ihu_A 313 PSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLAD------MGFDVHLTTSDP 365 (589)
T ss_dssp CCHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEESCC
T ss_pred chhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHHH------CCCcEEEEeCCC
Confidence 567777643 2344567888999999999999999988776 678999999874
No 411
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.86 E-value=0.42 Score=37.87 Aligned_cols=43 Identities=21% Similarity=0.123 Sum_probs=28.4
Q ss_pred EEEecCCCCChhHHHHHHHHHhcCCC--ccC-------CCCCeEEEEeCCCC
Q 047388 129 TEAFGEFRSGKTQLAHTLCVCTQLPT--NMR-------GGNGKVAYIDTEGT 171 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la~~~~~~~--~~g-------g~~~~vl~i~~e~~ 171 (352)
+.+.|++|+|||+|+..++..-.... +.+ ..+..+.++|+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~ 54 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 54 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCC
T ss_pred EEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCC
Confidence 68999999999999999876533211 111 12345667777654
No 412
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.84 E-value=0.015 Score=50.17 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=19.6
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
++.|.|+|||||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988754
No 413
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.84 E-value=0.021 Score=51.89 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=30.3
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
.+.-+.|+|+||+|||+++..++..... .+.+.+++++..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~------~~~~~v~v~~~~ 63 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSAR------SDRPLVTLNCAA 63 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSC------SSSCCCEEECSS
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcc------cCCCeEEEeCCC
Confidence 3556899999999999999988765432 456677887764
No 414
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.84 E-value=0.021 Score=56.97 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=23.6
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
+..|..+.|.||||+|||||+..++...
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 4556899999999999999999877643
No 415
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.83 E-value=0.017 Score=50.16 Aligned_cols=36 Identities=22% Similarity=0.163 Sum_probs=31.4
Q ss_pred EEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 129 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
+.|.|..|+||||++.++|...+. .+.+|+.+|...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMAS------DYDKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTT------TCSCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH------CCCeEEEEeCCC
Confidence 455899999999999999998876 678999999875
No 416
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.83 E-value=0.025 Score=57.67 Aligned_cols=42 Identities=29% Similarity=0.171 Sum_probs=29.5
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
..|..+.++||+|||||+.+...+...... .+.+++|+....
T Consensus 37 ~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~~l~i~P~r 78 (720)
T 2zj8_A 37 LEGKNALISIPTASGKTLIAEIAMVHRILT-----QGGKAVYIVPLK 78 (720)
T ss_dssp GGTCEEEEECCGGGCHHHHHHHHHHHHHHH-----HCSEEEEECSSG
T ss_pred cCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----CCCEEEEEcCcH
Confidence 346789999999999998875444433221 257899987653
No 417
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.76 E-value=0.017 Score=48.79 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.9
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
++.|+|++||||||++..++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999988754
No 418
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.75 E-value=0.029 Score=52.35 Aligned_cols=27 Identities=30% Similarity=0.214 Sum_probs=22.3
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
.+...+.|+||||+|||+++..++...
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 345568999999999999999887653
No 419
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=94.75 E-value=0.019 Score=54.73 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=23.3
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHH
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
+.+|+++.|+||+|+|||+|+..++..
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 456899999999999999999877654
No 420
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.74 E-value=0.018 Score=53.10 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.6
Q ss_pred cEEEEecCCCCChhHHHHHHHHH
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.++.|+||+|||||||+..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 38999999999999999988764
No 421
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.74 E-value=0.017 Score=48.77 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=20.8
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
--++.|+|.+||||||++..++..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999988754
No 422
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.69 E-value=0.41 Score=39.33 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=20.1
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+.|+|++|+|||+|+..++...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 48899999999999999887653
No 423
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.66 E-value=0.018 Score=53.68 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.0
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
+.+| ++.|+||+|+|||+++..++.
T Consensus 24 ~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 24 FPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EcCC-eEEEECCCCCChhHHHHHHHH
Confidence 5677 999999999999999987765
No 424
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.65 E-value=0.017 Score=49.25 Aligned_cols=22 Identities=18% Similarity=0.043 Sum_probs=19.4
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.+.|.|+|||||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988764
No 425
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.63 E-value=0.22 Score=41.06 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=20.3
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+.|+|++|+|||+|+..++...
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999987654
No 426
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.63 E-value=0.024 Score=50.78 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=32.9
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~ 171 (352)
.++.|.|..|+||||++.++|...+. .+.+|+.+|....
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~------~G~rVlliD~D~q 41 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAE------MGKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHH------TTCCEEEEEECSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHH------CCCeEEEEecCCC
Confidence 35667899999999999999988876 6789999998743
No 427
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.62 E-value=0.87 Score=37.48 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.7
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.|+|++|+|||+|+..++..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999988765
No 428
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.61 E-value=0.023 Score=57.16 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=31.4
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
...+.+|.||||+|||+.+.+++..... .+.+++..+..+
T Consensus 204 ~~~~~lI~GPPGTGKT~ti~~~I~~l~~------~~~~ILv~a~TN 243 (646)
T 4b3f_X 204 QKELAIIHGPPGTGKTTTVVEIILQAVK------QGLKVLCCAPSN 243 (646)
T ss_dssp CSSEEEEECCTTSCHHHHHHHHHHHHHH------TTCCEEEEESSH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEcCch
Confidence 4569999999999999998888777665 456777766553
No 429
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.59 E-value=0.097 Score=49.84 Aligned_cols=50 Identities=12% Similarity=-0.049 Sum_probs=32.4
Q ss_pred CCcEEEEecCCCCChhHHH-HHHHHHhcCCCccCCCCCeEEEEeCCCCCChhhHHHHHHHc
Q 047388 125 TGAITEAFGEFRSGKTQLA-HTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERF 184 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~-~~la~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 184 (352)
+|..+++.||+|||||..+ ..++..+.. .+.+++|+... ..-..++.+.+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~------~g~~~lvl~Pt----~~La~Q~~~~~ 51 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK------KRLRTVILAPT----RVVASEMYEAL 51 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH------TTCCEEEEESS----HHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh------CCCCEEEECcH----HHHHHHHHHHh
Confidence 3778999999999999975 433323332 45678888754 23344555555
No 430
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.58 E-value=0.018 Score=51.82 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=20.0
Q ss_pred cEEEEecCCCCChhHHHHHHHH
Q 047388 127 AITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~ 148 (352)
.++.|.|+|||||||++..++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998876
No 431
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.58 E-value=0.031 Score=51.18 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.6
Q ss_pred cEEEEecCCCCChhHHHHHHHHH
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.++.|+||+|||||+++..++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999988764
No 432
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.54 E-value=0.029 Score=51.27 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=36.2
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
+..-.++.|+|.-|+||||.+.+++...+. .+.+|+.+|.+-
T Consensus 45 i~~aKVIAIaGKGGVGKTTtavNLA~aLA~------~GkkVllID~Dp 86 (314)
T 3fwy_A 45 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSI------LGKRVLQIGCDP 86 (314)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEEESS
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHHH------CCCeEEEEecCC
Confidence 445679999999999999999999998887 788999999873
No 433
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=94.54 E-value=0.057 Score=60.25 Aligned_cols=47 Identities=11% Similarity=0.134 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHcCCCchhhhhcCChhhHHhhhCCCHHHHHHHHHHHH
Q 047388 37 QGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVEKICEAAE 85 (352)
Q Consensus 37 ~~~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 85 (352)
++++...+.+|.++|+ +.+++...++.++..+.+... --.++.+.+.
T Consensus 732 ~~i~~~~~~~l~~~~~-~~~~l~~~~~~~l~~~~~~~~-~g~~i~~~~~ 778 (1724)
T 4f92_B 732 RKLPEEVVKKIEKKNF-PFERLYDLNHNEIGELIRMPK-MGKTIHKYVH 778 (1724)
T ss_dssp TTSCHHHHHHHHTSSC-CGGGGGGCCHHHHHHHHTCST-THHHHHHHHT
T ss_pred CCCCHHHHHHHHhcCC-CHHHHHhCCHHHHHHHHCCch-HHHHHHHHHH
Confidence 6899999999999999 899999999999998876542 2333444444
No 434
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.50 E-value=0.019 Score=54.67 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.2
Q ss_pred CCcEEEEecCCCCChhHHHHHHHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
...++.|+|+|||||||++..++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998764
No 435
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.46 E-value=0.027 Score=57.25 Aligned_cols=38 Identities=26% Similarity=0.184 Sum_probs=29.5
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
|..+.++||+|||||+.+...+..... .+.+++|+...
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~------~~~~~l~i~P~ 77 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAI------KGGKSLYVVPL 77 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHH------TTCCEEEEESS
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHH------hCCcEEEEeCc
Confidence 678999999999999988766655443 35789998754
No 436
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.45 E-value=0.021 Score=51.17 Aligned_cols=22 Identities=27% Similarity=0.172 Sum_probs=20.0
Q ss_pred CcEEEEecCCCCChhHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la 147 (352)
.-++.|+|++||||||++..++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999887
No 437
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.45 E-value=0.022 Score=46.72 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.7
Q ss_pred CCcEEEEecCCCCChhHHHHHHHH
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
+|.-+.|+|+||+|||+|+..++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567899999999999999998864
No 438
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.45 E-value=0.022 Score=51.89 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.0
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
+.++.|+||+|||||+|+..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 458899999999999999988754
No 439
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.44 E-value=0.022 Score=47.18 Aligned_cols=24 Identities=25% Similarity=0.126 Sum_probs=21.2
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
|.-++|.|+||+||||++..++..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 567899999999999999988764
No 440
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.44 E-value=0.048 Score=47.22 Aligned_cols=40 Identities=10% Similarity=0.025 Sum_probs=32.0
Q ss_pred CcEEEEe-cCCCCChhHHHHHHHHHhcCCCccCCC-CCeEEEEeCCCC
Q 047388 126 GAITEAF-GEFRSGKTQLAHTLCVCTQLPTNMRGG-NGKVAYIDTEGT 171 (352)
Q Consensus 126 G~i~~I~-G~~GsGKTtl~~~la~~~~~~~~~gg~-~~~vl~i~~e~~ 171 (352)
+.++.++ +..|+||||++.++|...+. . +.+|+++|.+..
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~------~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQ------EPDIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTT------STTCCEEEEECCTT
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHh------CcCCCEEEEECCCC
Confidence 4455555 66899999999999998876 5 889999998743
No 441
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.43 E-value=0.021 Score=47.68 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=20.1
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
.+.|.|++|+|||||+..++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999887643
No 442
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.43 E-value=0.018 Score=52.60 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.6
Q ss_pred cEEEEecCCCCChhHHHHHHHHH
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.++.|+|++|||||||+..++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 58999999999999999988754
No 443
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.37 E-value=0.046 Score=46.47 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=27.8
Q ss_pred EEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
.+.|+|.+|+|||||+..++..... ..++..++.+.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~~~-------~~~~~~i~~d~ 67 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERIGN-------EVKIGAMLGDV 67 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTT-------TSCEEEEECSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcc-------CCeEEEEecCC
Confidence 7899999999999999998876432 24566676653
No 444
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.36 E-value=0.039 Score=54.86 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=35.6
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCC
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~ 170 (352)
...++.+.|.+|+||||++.++|...+. .+.+|+++|++.
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~------~G~rVLlvd~D~ 46 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAE------QGKRVLLVSTDP 46 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEECCT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHH------CCCcEEEEECCC
Confidence 3578999999999999999999998876 678999999985
No 445
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.35 E-value=0.0044 Score=53.95 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.3
Q ss_pred cEEEEecCCCCChhHHHHHHHHHh
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
+++.|.||+|||||||+..++...
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhccc
Confidence 578899999999999999776543
No 446
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.33 E-value=0.022 Score=47.75 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=19.5
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.+.|.|++|+|||||+..++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 447
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.30 E-value=0.038 Score=48.24 Aligned_cols=32 Identities=13% Similarity=0.024 Sum_probs=24.1
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHhcC
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCTQL 152 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~ 152 (352)
+.-.+|.++.|.|++||||||++..++.....
T Consensus 22 ~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 22 SNAMNAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp ----CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44446889999999999999999988765543
No 448
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.28 E-value=0.026 Score=51.28 Aligned_cols=24 Identities=33% Similarity=0.194 Sum_probs=21.3
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
..++.|+||+|||||+|+..++..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 458999999999999999998765
No 449
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.27 E-value=0.043 Score=50.05 Aligned_cols=24 Identities=25% Similarity=0.041 Sum_probs=20.9
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
|.-+.|+||||+|||+++..++..
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 347899999999999999988765
No 450
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.26 E-value=0.029 Score=48.75 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=21.0
Q ss_pred CCCCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 121 GGIETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 121 GGl~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
|-..+|.++.|.|++||||||++..++...
T Consensus 20 ~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 20 GSMARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp ---CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 334678999999999999999999887654
No 451
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.20 E-value=0.62 Score=39.72 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.5
Q ss_pred EEEecCCCCChhHHHHHHHHHh
Q 047388 129 TEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la~~~ 150 (352)
++|.|.+|+|||+|+..++.+.
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCcCHHHHHHHHHhCC
Confidence 7899999999999999987653
No 452
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.10 E-value=0.032 Score=51.67 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=22.1
Q ss_pred CCCcE--EEEecCCCCChhHHHHHHHHHh
Q 047388 124 ETGAI--TEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 124 ~~G~i--~~I~G~~GsGKTtl~~~la~~~ 150 (352)
+.|+. +.|.|++|+||||++..++...
T Consensus 20 ~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 20 EDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp TTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 45555 9999999999999998777653
No 453
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.08 E-value=0.22 Score=41.66 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=20.7
Q ss_pred EEEEecCCCCChhHHHHHHHHHhc
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQ 151 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~ 151 (352)
-+.|+|++|+|||+|+..++.+..
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~~~ 55 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTNAF 55 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 588999999999999998886544
No 454
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.06 E-value=0.012 Score=46.91 Aligned_cols=21 Identities=19% Similarity=-0.015 Sum_probs=17.7
Q ss_pred cEEEEecCCCCChhHHHHHHH
Q 047388 127 AITEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la 147 (352)
.-+.|+|+||+|||+++..++
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGC
T ss_pred CcEEEECCCCccHHHHHHHHH
Confidence 348899999999999998553
No 455
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.01 E-value=0.064 Score=49.19 Aligned_cols=40 Identities=20% Similarity=0.067 Sum_probs=35.0
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~ 171 (352)
..++.+.|..|+||||++.++|...+. .+.+|+.+|++..
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~------~G~rVllvD~D~~ 58 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSK------VRSSVLLISTDPA 58 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHT------SSSCEEEEECCTT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCeEEEEECCCC
Confidence 568889999999999999999988876 6889999999853
No 456
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=93.99 E-value=0.14 Score=54.93 Aligned_cols=56 Identities=18% Similarity=0.084 Sum_probs=35.3
Q ss_pred hhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC
Q 047388 114 ALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 114 ~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~ 171 (352)
.|...|..+=....++.|+|+.|+|||||+.+++...... .......++|++....
T Consensus 135 ~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~--~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 135 AIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLL--EGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp HHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHH--TTTSTTCEEEEECCSC
T ss_pred HHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHH--HhhCCCeEEEEEECCc
Confidence 3444452222345689999999999999998876442100 0113467889987654
No 457
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.97 E-value=0.03 Score=45.37 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=18.9
Q ss_pred EEEEecCCCCChhHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~ 148 (352)
.+.|.|++|+|||+|+..++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999998864
No 458
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.96 E-value=0.041 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.051 Sum_probs=20.1
Q ss_pred EEEecCCCCChhHHHHHHHHHh
Q 047388 129 TEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la~~~ 150 (352)
+.|+||+|+|||+++..++...
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 8999999999999999888764
No 459
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.94 E-value=0.029 Score=50.75 Aligned_cols=22 Identities=27% Similarity=0.033 Sum_probs=20.0
Q ss_pred EEEecCCCCChhHHHHHHHHHh
Q 047388 129 TEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la~~~ 150 (352)
+.|+||+|+|||+++..++...
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999888764
No 460
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.92 E-value=0.053 Score=46.17 Aligned_cols=37 Identities=30% Similarity=0.172 Sum_probs=30.5
Q ss_pred EEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~ 171 (352)
|....+..|+||||++.++|...+. .+ +|+.+|....
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~------~g-~VlliD~D~q 39 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLAL------QG-ETLLIDGDPN 39 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHT------TS-CEEEEEECTT
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHh------cC-CEEEEECCCC
Confidence 3445688999999999999988776 56 9999998754
No 461
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=93.92 E-value=0.04 Score=52.48 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=25.9
Q ss_pred cEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeC
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDT 168 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~ 168 (352)
.-+.|+|++|+|||+++..++.+... .+.+++.+|.
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~------~g~~viv~Dp 89 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLL------RGDRMVIVDP 89 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHH------TTCEEEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH------CCCcEEEEeC
Confidence 45899999999999998777766554 3344555554
No 462
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.92 E-value=0.051 Score=46.62 Aligned_cols=28 Identities=14% Similarity=0.024 Sum_probs=23.6
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHhcC
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCTQL 152 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~~~ 152 (352)
+|.++.|.|++||||||.+..++.....
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999988765543
No 463
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.90 E-value=0.35 Score=42.90 Aligned_cols=44 Identities=30% Similarity=0.289 Sum_probs=29.5
Q ss_pred EEEEecCCCCChhHHHHHHHHHhcCCCcc-C-----------CCCCeEEEEeCCCC
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQLPTNM-R-----------GGNGKVAYIDTEGT 171 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~~~~~~-g-----------g~~~~vl~i~~e~~ 171 (352)
.+.|+|.+|+|||+|+..+.........+ | ..+..+.++|+-+.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~ 60 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGT 60 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCC
Confidence 47899999999999999887543211000 0 12457778888764
No 464
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.89 E-value=0.037 Score=47.01 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=19.5
Q ss_pred cEEEEecCCCCChhHHHHHHHHH
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.+++|+|++|+|||+++..+...
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 49999999999999998766543
No 465
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.88 E-value=0.041 Score=49.40 Aligned_cols=40 Identities=23% Similarity=0.154 Sum_probs=32.9
Q ss_pred CcEEEEec---CCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCCCC
Q 047388 126 GAITEAFG---EFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGT 171 (352)
Q Consensus 126 G~i~~I~G---~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e~~ 171 (352)
+.++.|++ ..|+||||++.++|...+. .+.+|+.+|....
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~------~G~rVlliD~D~q 76 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDK------LNLKVLMIDKDLQ 76 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHH------TTCCEEEEEECTT
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHh------CCCeEEEEeCCCC
Confidence 55666765 8999999999999988775 6789999998753
No 466
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.81 E-value=0.047 Score=50.98 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=32.8
Q ss_pred CCCcEEEEe-cCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 124 ETGAITEAF-GEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 124 ~~G~i~~I~-G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
..+.++.|+ |..|+||||++.++|...+. .+.+|+++|.+
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~------~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHAN------MGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHH------HTCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHh------CCCCEEEEECC
Confidence 345666666 59999999999999988776 57899999987
No 467
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.78 E-value=0.49 Score=38.78 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=19.6
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.|+|++|+|||+|+..++..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999988754
No 468
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.78 E-value=0.028 Score=46.52 Aligned_cols=21 Identities=33% Similarity=0.289 Sum_probs=18.3
Q ss_pred EEEEecCCCCChhHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+.|.|++|+|||+|+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999998763
No 469
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.76 E-value=0.054 Score=53.69 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=30.5
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
+.++.|.|+||+|||+++..++..... .+.+|++....
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~------~g~~Vl~~ApT 241 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAES------LGLEVGLCAPT 241 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHH------TTCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh------cCCeEEEecCc
Confidence 579999999999999999888766554 46678877654
No 470
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.74 E-value=0.036 Score=48.22 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=21.6
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
|.++.|.|.+||||||++..++..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999988765
No 471
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.60 E-value=0.24 Score=40.70 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=19.8
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+.|+|++|+|||+|+..++...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999886543
No 472
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.57 E-value=0.32 Score=41.09 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.2
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+.|+|++|+|||+|+..++...
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999987653
No 473
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.55 E-value=0.47 Score=38.80 Aligned_cols=19 Identities=26% Similarity=0.128 Sum_probs=16.2
Q ss_pred EEEEecCCCCChhHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTL 146 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~l 146 (352)
-+.|.|++|+|||+|+..+
T Consensus 16 ki~vvG~~~~GKssL~~~l 34 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWI 34 (198)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999999544
No 474
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.48 E-value=0.055 Score=53.55 Aligned_cols=54 Identities=19% Similarity=0.102 Sum_probs=34.0
Q ss_pred hhHHhhcCCCCCCcEEEEecCCCCChhHHHHHHHHHhcC-CCccCCCCCeEEEEeCCC
Q 047388 114 ALDELLGGGIETGAITEAFGEFRSGKTQLAHTLCVCTQL-PTNMRGGNGKVAYIDTEG 170 (352)
Q Consensus 114 ~LD~~L~GGl~~G~i~~I~G~~GsGKTtl~~~la~~~~~-~~~~gg~~~~vl~i~~e~ 170 (352)
.|...|..+-....++.|+|++|+|||+|+.+++..... . +.....++|++...
T Consensus 135 ~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 135 AIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLE---GCFPGGVHWVSVGK 189 (591)
T ss_dssp HHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHH---HHCTTCEEEEEEES
T ss_pred HHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHH---hhCCCceEEEECCC
Confidence 344555322234679999999999999999988643210 0 00234688887654
No 475
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.47 E-value=0.042 Score=44.09 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=19.7
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+.++|++|+|||+|+..++...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999887653
No 476
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.45 E-value=0.029 Score=51.37 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.7
Q ss_pred EEEecCCCCChhHHHHHHHHHh
Q 047388 129 TEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la~~~ 150 (352)
+.|+||||+|||+++..++...
T Consensus 48 vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHS
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 8999999999999999887653
No 477
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.39 E-value=0.07 Score=52.51 Aligned_cols=50 Identities=24% Similarity=0.249 Sum_probs=34.7
Q ss_pred hhHHhhcCCCC----CCcEEEEecCCCCChhHHHHHHHHHhcCCCccCCCCCeEEEEeCC
Q 047388 114 ALDELLGGGIE----TGAITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTE 169 (352)
Q Consensus 114 ~LD~~L~GGl~----~G~i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~~vl~i~~e 169 (352)
++.+.+--.++ .+.++.|+|.+||||||++..++..... .+..+.+++.+
T Consensus 356 eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~------~G~~~~~ld~D 409 (546)
T 2gks_A 356 EVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA------RGRKVTLLDGD 409 (546)
T ss_dssp HHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEECHH
T ss_pred hHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh------cCCeEEEECch
Confidence 44444433443 3789999999999999999988765432 34567777643
No 478
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.33 E-value=0.045 Score=43.58 Aligned_cols=22 Identities=23% Similarity=0.153 Sum_probs=19.0
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.+.|++|+|||+|+..++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999988753
No 479
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.32 E-value=0.048 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.7
Q ss_pred cEEEEecCCCCChhHHHHHHHHH
Q 047388 127 AITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 127 ~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.++.|+||+|+|||+|+..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 47899999999999999998865
No 480
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.29 E-value=0.045 Score=45.02 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=19.5
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.+.|.|++|+|||+|+..++..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988753
No 481
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.29 E-value=0.06 Score=46.31 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=23.6
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
.+|.++.|.|++|+||||.+..++...
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999887654
No 482
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.26 E-value=0.063 Score=51.30 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.2
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-++++||||+|||+++..+|...
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHc
Confidence 38899999999999999888764
No 483
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.22 E-value=0.058 Score=50.79 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=26.2
Q ss_pred cCCCCCCcEEEEecCCCCChhHHHHHHHH
Q 047388 120 GGGIETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 120 ~GGl~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
-|=++.|..+.|.|+||+|||||+..++.
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 36788899999999999999999998876
No 484
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.08 E-value=0.066 Score=51.45 Aligned_cols=36 Identities=11% Similarity=0.034 Sum_probs=28.0
Q ss_pred EEEEecCCCCChhHHHHHHHHHhcCCCccCCCCC-eEEEEeCC
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNG-KVAYIDTE 169 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~~~~~~gg~~~-~vl~i~~e 169 (352)
.+.|.|++|+|||+++..++..... .+. .++.+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~------~~~~~il~~a~T 83 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIS------TGETGIILAAPT 83 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH------TTCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh------cCCceEEEecCc
Confidence 9999999999999999988877654 233 56666554
No 485
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.08 E-value=0.057 Score=46.07 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.1
Q ss_pred EEEEecCCCCChhHHHHHHHHHhc
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCTQ 151 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~~ 151 (352)
.+.|+|.+|+|||||+..++....
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhc
Confidence 688899999999999999987643
No 486
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.07 E-value=0.06 Score=46.53 Aligned_cols=27 Identities=26% Similarity=0.127 Sum_probs=23.2
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
.+|.++.|.|.+||||||++..++...
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999998877653
No 487
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.06 E-value=0.028 Score=49.65 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=21.2
Q ss_pred CCCcEEEEecCCCCChhHHHHHHHH
Q 047388 124 ETGAITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 124 ~~G~i~~I~G~~GsGKTtl~~~la~ 148 (352)
.++.++.|.|.+||||||++..++.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999987654
No 488
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.05 E-value=0.052 Score=46.21 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=20.5
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
+-++.|+|++||||||++..++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999987653
No 489
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.00 E-value=0.054 Score=43.55 Aligned_cols=19 Identities=37% Similarity=0.372 Sum_probs=17.4
Q ss_pred EEEecCCCCChhHHHHHHH
Q 047388 129 TEAFGEFRSGKTQLAHTLC 147 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la 147 (352)
+.|.|++|+|||+|+..++
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999875
No 490
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.99 E-value=0.054 Score=43.79 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=18.4
Q ss_pred EEEEecCCCCChhHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCV 148 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~ 148 (352)
-+.|+|++|+|||+|+..++.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 378999999999999998764
No 491
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=92.94 E-value=0.14 Score=51.75 Aligned_cols=28 Identities=29% Similarity=0.157 Sum_probs=24.4
Q ss_pred CCCCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 123 IETGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 123 l~~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
++++..+.|.|++|+|||||+..++...
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhc
Confidence 4678899999999999999999887653
No 492
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.90 E-value=0.057 Score=43.27 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.3
Q ss_pred EEEecCCCCChhHHHHHHHHHh
Q 047388 129 TEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la~~~ 150 (352)
+.++|++|+|||+|+..++...
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999887654
No 493
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.90 E-value=0.057 Score=43.39 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.0
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.++|++|+|||+|+..++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999988753
No 494
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.90 E-value=0.078 Score=52.92 Aligned_cols=26 Identities=23% Similarity=0.150 Sum_probs=23.2
Q ss_pred CCcEEEEecCCCCChhHHHHHHHHHh
Q 047388 125 TGAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 125 ~G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
+|.++.|+|.|||||||++..++...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999887654
No 495
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.89 E-value=0.056 Score=44.73 Aligned_cols=24 Identities=29% Similarity=0.156 Sum_probs=20.6
Q ss_pred CcEEEEecCCCCChhHHHHHHHHH
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~ 149 (352)
.--+.|+|++|+|||+|+..++..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999988754
No 496
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.87 E-value=0.055 Score=43.42 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=18.8
Q ss_pred EEEecCCCCChhHHHHHHHHH
Q 047388 129 TEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 129 ~~I~G~~GsGKTtl~~~la~~ 149 (352)
+.|+|++|+|||+|+..++..
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 689999999999999988754
No 497
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.84 E-value=0.058 Score=43.86 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=19.4
Q ss_pred EEEEecCCCCChhHHHHHHHHH
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVC 149 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~ 149 (352)
-+.|+|++|+|||+|+..++..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988764
No 498
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=92.83 E-value=0.069 Score=49.14 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=41.7
Q ss_pred CCceEEEEcccccchhcccCCCcchHHHHHHHHHHHHHHHHHHHHhCcEEEEEcccccCCCCCcccCCCCCCCcchhhhh
Q 047388 220 EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQMLSRLTKISEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAH 299 (352)
Q Consensus 220 ~~~~lvvIDsl~~l~~~~~~~~g~~~~r~~~l~~i~~~L~~la~~~~~~viv~~h~~~~~~~~~~~~~~~~~~gg~~~~~ 299 (352)
.+|+++++|++++.+.+ ..+ ..+...|+.+.++ +.+||+++|-.. +..
T Consensus 271 ~~p~~lllDEp~~~LD~--------~~~----~~l~~~l~~~~~~-~~~vi~~sH~~~-------------------~~~ 318 (339)
T 3qkt_A 271 GEISLLILDEPTPYLDE--------ERR----RKLITIMERYLKK-IPQVILVSHDEE-------------------LKD 318 (339)
T ss_dssp TTTCEEEEECCCTTCCH--------HHH----HHHHHHHHHTGGG-SSEEEEEESCGG-------------------GGG
T ss_pred CCCCEEEEECCCCCCCH--------HHH----HHHHHHHHHHHhc-CCEEEEEEChHH-------------------HHH
Confidence 36899999998876532 222 2566667777554 779999988521 234
Q ss_pred ccceEEEEEeecCC
Q 047388 300 AVTIRLMFRKGKGE 313 (352)
Q Consensus 300 ~~~~~i~L~~~~~~ 313 (352)
.+|.++.+...+|.
T Consensus 319 ~~d~~~~l~~~~g~ 332 (339)
T 3qkt_A 319 AADHVIRISLENGS 332 (339)
T ss_dssp GCSEEEEEEEETTE
T ss_pred hCCEEEEEEecCCc
Confidence 67888888876653
No 499
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.82 E-value=0.059 Score=43.33 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=19.8
Q ss_pred EEEEecCCCCChhHHHHHHHHHh
Q 047388 128 ITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 128 i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
-+.++|++|+|||+|+..++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999887653
No 500
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.82 E-value=0.028 Score=54.69 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=21.2
Q ss_pred CcEEEEecCCCCChhHHHHHHHHHh
Q 047388 126 GAITEAFGEFRSGKTQLAHTLCVCT 150 (352)
Q Consensus 126 G~i~~I~G~~GsGKTtl~~~la~~~ 150 (352)
|.-+.|+||||+|||+++..++...
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred CCeeEeecCchHHHHHHHHHHHHHH
Confidence 4578999999999999999887543
Done!