BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047389
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SJ24|EC12_ARATH Egg cell-secreted protein 1.2 OS=Arabidopsis thaliana GN=EC1.2
PE=2 SV=1
Length = 125
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 1 MALKHVFFILTFTCLIMANIANATTRNDRLNNSMKPGYDFATRLDVRGGLTECWNTLMKL 60
MA F T L++ NI+ T + + A RL+ GGL ECWN L +L
Sbjct: 1 MASNTSFLFATIAILLVLNISGRTLP------ETEDSTNIAARLN-GGGLMECWNALYEL 53
Query: 61 KSCSNEIVIFFLNSQADIGPDCCRVID 87
KSC+NEIV+FFLN + +G DCC+ ++
Sbjct: 54 KSCTNEIVLFFLNGETKLGVDCCQAVE 80
>sp|Q9T039|EC14_ARATH Egg cell-secreted protein 1.4 OS=Arabidopsis thaliana GN=EC1.4
PE=2 SV=1
Length = 127
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 1 MALKHVFFILTFTCLIMANIANATTRNDRLNNSMKPGYDFATRLDVRGGLTECWNTLMKL 60
MA F T T LI+ + N T L + + A RL GGL ECWN L +L
Sbjct: 1 MASNTTFLFSTVTLLII--LLNTTVSGRDL--PAESSTNIAARLQ-SGGLMECWNALYEL 55
Query: 61 KSCSNEIVIFFLNSQADIGPDCCRVID 87
KSC+NEIV+FFLN + +G CC +D
Sbjct: 56 KSCTNEIVLFFLNGETKLGVSCCESVD 82
>sp|Q9SJ23|EC13_ARATH Egg cell-secreted protein 1.3 OS=Arabidopsis thaliana GN=EC1.3
PE=2 SV=1
Length = 125
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 1 MALKHVFFILTFTCLIMANIANATTRNDRLNNSMKPGYDFATRLDVRGGLTECWNTLMKL 60
MA F +T T L++ N+++ R + + A RL GGL +CW+ L +L
Sbjct: 1 MASNTSFLFVTVTLLLVLNVSS------RALPPVADSTNIAARL-TGGGLMQCWDALYEL 53
Query: 61 KSCSNEIVIFFLNSQADIGPDCCRVID 87
KSC+NEIV+FFLN + +G CC +D
Sbjct: 54 KSCTNEIVLFFLNGETKLGYGCCNAVD 80
>sp|Q9SRD8|EC11_ARATH Egg cell-secreted protein 1.1 OS=Arabidopsis thaliana GN=EC1.1
PE=2 SV=1
Length = 158
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 6 VFFILTFTCLIMANIANATTRNDRLNNSMKPGYDFATRLDVRGGLTECWNTLMKLKSCSN 65
F I+T ++ ++ A + P RL + CW++LM+L+ CS
Sbjct: 10 TFNIVTLMLMVASSTVTARPLMKPSMGTSSPTTSLVYRLKLDEDTGYCWDSLMQLQHCSG 69
Query: 66 EIVIFFLNSQADIGPDCCRVI 86
E+++FFLN + IGP CC I
Sbjct: 70 ELILFFLNGETYIGPGCCSAI 90
>sp|Q9FGG1|EC15_ARATH Egg cell-secreted protein 1.5 OS=Arabidopsis thaliana GN=EC1.5
PE=2 SV=1
Length = 155
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 41 ATRLDVRGGLTECWNTLMKLKSCSNEIVIFFLNSQADIGP--------DCCRVI 86
AT G L +CWN ++LKSC++EIV FFL+ P DCC I
Sbjct: 41 ATDHSGAGNLMDCWNAGLELKSCTDEIVKFFLSQTGTSEPPVKGGIDKDCCGAI 94
>sp|O76096|CYTF_HUMAN Cystatin-F OS=Homo sapiens GN=CST7 PE=1 SV=1
Length = 145
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 9 ILTFTCLIMANIANAT--TRNDRLNNSMKPGYDFATRLDVRGGLTECWNTLMKLKSCSNE 66
+L F CL+++ + T + LN+ +KPG+ + + G L ++ K +C+N+
Sbjct: 7 LLAFCCLVLSTTGGPSPDTCSQDLNSRVKPGFPKTIKTNDPGVLQAARYSVEKFNNCTND 66
Query: 67 IVIF 70
+ +F
Sbjct: 67 MFLF 70
>sp|Q9WVK7|HCDH_RAT Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Rattus
norvegicus GN=Hadh PE=2 SV=1
Length = 314
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 2 ALKHVFFILTFTCLIMANIANATTRNDRL 30
A +H F + L + NIANATTR DR
Sbjct: 138 AAEHTIFASNTSSLQITNIANATTRQDRF 166
>sp|Q61425|HCDH_MOUSE Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Mus musculus
GN=Hadh PE=1 SV=2
Length = 314
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 2 ALKHVFFILTFTCLIMANIANATTRNDRL 30
A +H F + L + NIANATTR DR
Sbjct: 138 AAEHTIFASNTSSLQITNIANATTRQDRF 166
>sp|A1A5S1|PRP6_RAT Pre-mRNA-processing factor 6 OS=Rattus norvegicus GN=Prpf6 PE=2
SV=1
Length = 941
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 21 ANATTRNDRLNNSMKPG-YDFATRLDVRGGLTECWNTLM--KLKSCSNEIVIF 70
A A RL N PG + + RL+ R GL NTLM L+ C N +++
Sbjct: 762 ARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILW 814
>sp|Q91YR7|PRP6_MOUSE Pre-mRNA-processing factor 6 OS=Mus musculus GN=Prpf6 PE=2 SV=1
Length = 941
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 21 ANATTRNDRLNNSMKPG-YDFATRLDVRGGLTECWNTLM--KLKSCSNEIVIF 70
A A RL N PG + + RL+ R GL NTLM L+ C N +++
Sbjct: 762 ARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILW 814
>sp|O94906|PRP6_HUMAN Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1
Length = 941
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 21 ANATTRNDRLNNSMKPG-YDFATRLDVRGGLTECWNTLM--KLKSCSNEIVIF 70
A A RL N PG + + RL+ R GL NTLM L+ C N +++
Sbjct: 762 ARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILW 814
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.140 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,282,982
Number of Sequences: 539616
Number of extensions: 895931
Number of successful extensions: 2065
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2058
Number of HSP's gapped (non-prelim): 11
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)