Query 047389
Match_columns 89
No_of_seqs 77 out of 79
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 10:38:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 100.0 1.8E-30 3.8E-35 182.8 6.8 80 1-88 1-84 (118)
2 PF05617 Prolamin_like: Prolam 99.2 5.6E-12 1.2E-16 78.4 2.8 38 52-89 1-39 (70)
3 PF07172 GRP: Glycine rich pro 94.8 0.02 4.3E-07 38.7 1.9 25 1-29 1-28 (95)
4 PF10731 Anophelin: Thrombin i 64.9 6.4 0.00014 25.6 2.2 25 1-29 1-25 (65)
5 PLN00214 putative protein; Pro 46.0 19 0.00041 25.7 2.3 33 51-87 37-70 (115)
6 cd00010 AAI_LTSS AAI_LTSS: Alp 34.0 25 0.00055 20.5 1.2 18 71-88 7-25 (63)
7 cd01960 nsLTP1 nsLTP1: Non-spe 33.1 29 0.00064 22.0 1.5 31 53-88 3-34 (89)
8 PF15284 PAGK: Phage-encoded v 27.9 69 0.0015 20.6 2.5 21 3-23 4-24 (61)
9 PF04109 APG9: Autophagy prote 27.0 43 0.00093 27.6 1.8 28 58-85 329-359 (370)
10 PF06585 JHBP: Haemolymph juve 26.8 38 0.00081 24.6 1.3 24 49-72 28-51 (248)
11 KOG0897 Predicted ubiquitin-co 23.1 66 0.0014 23.2 1.9 45 33-77 25-81 (122)
12 PF15331 TP53IP5: Cellular tum 20.8 35 0.00075 26.8 0.1 11 52-62 42-52 (220)
No 1
>PLN00213 predicted protein; Provisional
Probab=99.96 E-value=1.8e-30 Score=182.76 Aligned_cols=80 Identities=23% Similarity=0.492 Sum_probs=72.8
Q ss_pred CcchhHHHHHHHHHHHHhhhhhhcc-ccccccCCCCCCCccccccccCC--ChhhhhhhhhcCcchHHHHHHHHHhcccc
Q 047389 1 MALKHVFFILTFTCLIMANIANATT-RNDRLNNSMKPGYDFATRLDVRG--GLTECWNTLMKLKSCSNEIVIFFLNSQAD 77 (89)
Q Consensus 1 Ma~k~~f~ll~v~~ii~~~~~s~~a-~~~~p~~~~~~~~~l~~rl~~~g--~~~~CWssl~~l~~C~~EI~~~flnG~~~ 77 (89)
|++|||+++|+++||+ +|+|| .+|+|.++|+|+| +++ .+| |+.||||||+++|||+.||++++++|||+
T Consensus 1 m~iknV~~ll~v~cIv----vsVna~lpqf~~~fp~~~p--~~~--~pg~pd~~kCwSSl~~vpGCv~EI~~si~~gkf~ 72 (118)
T PLN00213 1 MSIKNVFLLLAVLCII----VSVNAQLPQFPAQLPFLFP--FQL--IPGLPDITKCFSSVMDIPGCIAEISQSIFTGKFG 72 (118)
T ss_pred CchHHHHHHHHHHHHH----heeccCCCCCCCCCCCCCC--ccC--CCCCccHHHHHHHHcCCcchHHHHHHHHHhchhc
Confidence 9999999999999999 99999 5999988888777 445 344 89999999999999999999999999997
Q ss_pred -cChhhhhhhhh
Q 047389 78 -IGPDCCRVIDH 88 (89)
Q Consensus 78 -iGp~CCkAi~~ 88 (89)
||++|||||..
T Consensus 73 ~Ig~aCCKAf~~ 84 (118)
T PLN00213 73 NLGPACCKAFLD 84 (118)
T ss_pred ccchHHHHHHHh
Confidence 99999999975
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.23 E-value=5.6e-12 Score=78.40 Aligned_cols=38 Identities=34% Similarity=0.888 Sum_probs=35.2
Q ss_pred hhhhhhhcCcchHHHHHHHHHhcc-cccChhhhhhhhhC
Q 047389 52 ECWNTLMKLKSCSNEIVIFFLNSQ-ADIGPDCCRVIDHL 89 (89)
Q Consensus 52 ~CWssl~~l~~C~~EI~~~flnG~-~~iGp~CCkAi~~I 89 (89)
|||+++.++++|..||+.+|++|+ ..||++||++|+.+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~ 39 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKM 39 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHH
Confidence 699999999999999999999999 45999999999864
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=94.79 E-value=0.02 Score=38.74 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=14.8
Q ss_pred CcchhHHHH---HHHHHHHHhhhhhhcccccc
Q 047389 1 MALKHVFFI---LTFTCLIMANIANATTRNDR 29 (89)
Q Consensus 1 Ma~k~~f~l---l~v~~ii~~~~~s~~a~~~~ 29 (89)
||+|..++| |+++++| +|.+++|++
T Consensus 1 MaSK~~llL~l~LA~lLli----sSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLI----SSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHH----HhhhhhHHh
Confidence 998885443 2223333 677777766
No 4
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=64.95 E-value=6.4 Score=25.59 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=15.7
Q ss_pred CcchhHHHHHHHHHHHHhhhhhhcccccc
Q 047389 1 MALKHVFFILTFTCLIMANIANATTRNDR 29 (89)
Q Consensus 1 Ma~k~~f~ll~v~~ii~~~~~s~~a~~~~ 29 (89)
||.|-+ ++.++|++++ +-+.++||+
T Consensus 1 MA~Kl~--vialLC~aLv--a~vQ~APQY 25 (65)
T PF10731_consen 1 MASKLI--VIALLCVALV--AIVQSAPQY 25 (65)
T ss_pred Ccchhh--HHHHHHHHHH--HHHhcCccc
Confidence 788765 5666777764 334456665
No 5
>PLN00214 putative protein; Provisional
Probab=46.01 E-value=19 Score=25.70 Aligned_cols=33 Identities=18% Similarity=0.536 Sum_probs=24.5
Q ss_pred hhhhhhhhcCcchHHHHHHHHH-hcccccChhhhhhhh
Q 047389 51 TECWNTLMKLKSCSNEIVIFFL-NSQADIGPDCCRVID 87 (89)
Q Consensus 51 ~~CWssl~~l~~C~~EI~~~fl-nG~~~iGp~CCkAi~ 87 (89)
..|---+. +-|..||+..++ ||. ....||+-+.
T Consensus 37 ~~C~~Kmt--~KCa~EI~a~i~~N~t--~s~~CC~~LV 70 (115)
T PLN00214 37 NTCLVKIT--PKCALDIIAVVFENGT--LIDPCCNDLV 70 (115)
T ss_pred HHHHhhcc--HhhHHHHHHHHHcCCC--CchHHHHHHH
Confidence 45654444 669999999999 666 5888998664
No 6
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=33.96 E-value=25 Score=20.52 Aligned_cols=18 Identities=28% Similarity=0.641 Sum_probs=12.8
Q ss_pred HHhccc-ccChhhhhhhhh
Q 047389 71 FLNSQA-DIGPDCCRVIDH 88 (89)
Q Consensus 71 flnG~~-~iGp~CCkAi~~ 88 (89)
|++|.. ...+.||.+++.
T Consensus 7 y~~~~~~~Ps~~CC~~l~~ 25 (63)
T cd00010 7 YLTGGATAPPSDCCSGLKS 25 (63)
T ss_pred HHcCCCCCCChHHHHHHHH
Confidence 455553 388889999875
No 7
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=33.12 E-value=29 Score=21.96 Aligned_cols=31 Identities=23% Similarity=0.581 Sum_probs=21.1
Q ss_pred hhhhhhcCcchHHHHHHHHHhcccc-cChhhhhhhhh
Q 047389 53 CWNTLMKLKSCSNEIVIFFLNSQAD-IGPDCCRVIDH 88 (89)
Q Consensus 53 CWssl~~l~~C~~EI~~~flnG~~~-iGp~CCkAi~~ 88 (89)
|=..+..+..|.. |++|... -++.||.+++.
T Consensus 3 C~~v~~~l~~C~~-----y~~g~~~~Ps~~CC~~v~~ 34 (89)
T cd01960 3 CGQVTSLLAPCLG-----YLTGGGPAPSPACCSGVKS 34 (89)
T ss_pred HHHHHhhHHhHHH-----HHhCCCCCCChHHhhhhHH
Confidence 5556666777753 4555544 88899999875
No 8
>PF15284 PAGK: Phage-encoded virulence factor
Probab=27.92 E-value=69 Score=20.56 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=12.7
Q ss_pred chhHHHHHHHHHHHHhhhhhh
Q 047389 3 LKHVFFILTFTCLIMANIANA 23 (89)
Q Consensus 3 ~k~~f~ll~v~~ii~~~~~s~ 23 (89)
+|++|+.+++++...+-.+++
T Consensus 4 ~ksifL~l~~~LsA~~FSasa 24 (61)
T PF15284_consen 4 FKSIFLALVFILSAAGFSASA 24 (61)
T ss_pred HHHHHHHHHHHHHHhhhhHHH
Confidence 578888776666664333343
No 9
>PF04109 APG9: Autophagy protein Apg9 ; InterPro: IPR007241 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg9 plays a direct role in the formation of the cytoplasm to vacuole targeting and autophagic vesicles, possibly serving as a marker for a specialised compartment essential for these vesicle-mediated alternative targeting pathways [].
Probab=26.96 E-value=43 Score=27.61 Aligned_cols=28 Identities=32% Similarity=0.593 Sum_probs=23.1
Q ss_pred hcCcchHHHHHHHHHhcccc---cChhhhhh
Q 047389 58 MKLKSCSNEIVIFFLNSQAD---IGPDCCRV 85 (89)
Q Consensus 58 ~~l~~C~~EI~~~flnG~~~---iGp~CCkA 85 (89)
..+|.|..||+.||.+=..+ +|.-|--|
T Consensus 329 f~Lp~~a~~IvdF~r~~TV~V~GvG~VCsfA 359 (370)
T PF04109_consen 329 FSLPKCADEIVDFFREFTVHVDGVGYVCSFA 359 (370)
T ss_pred hcccccHHHHHHHHHhceeecCCCCCeeeec
Confidence 57899999999999887775 88887543
No 10
>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP). Juvenile hormone (JH) has a profound effect on insects. It regulates embryogenesis, maintains the status quo of larva development and stimulates reproductive maturation in the adult forms. JH is transported from the sites of its synthesis to target tissues by a haemolymph carrier called juvenile hormone-binding protein (JHBP). JHBP protects the JH molecules from hydrolysis by non-specific esterases present in the insect haemolymph []. The crystal structure of the JHBP from Galleria mellonella (Wax moth) shows an unusual fold consisting of a long alpha-helix wrapped in a much curved antiparallel beta-sheet. The folding pattern for this structure closely resembles that found in some tandem-repeat mammalian lipid-binding and bactericidal permeability-increasing proteins, with a similar organisation of the major cavity and a disulphide bond linking the long helix and the beta-sheet. It would appear that JHBP forms two cavities, only one of which, the one near the N- and C-termini, binds the hormone; binding induces a conformational change, of unknown significance [, ].; PDB: 3A1Z_D 3AOS_B 3AOT_A 2RQF_A 2RCK_A 3E8W_A 3E8T_A.
Probab=26.81 E-value=38 Score=24.60 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=13.0
Q ss_pred ChhhhhhhhhcCcchHHHHHHHHH
Q 047389 49 GLTECWNTLMKLKSCSNEIVIFFL 72 (89)
Q Consensus 49 ~~~~CWssl~~l~~C~~EI~~~fl 72 (89)
.+.+|..+=-++..|..|.++.+.
T Consensus 28 ~~~~C~~~~~~~~~cl~~~~~~~~ 51 (248)
T PF06585_consen 28 YIKPCKRSDPNLNECLRESIENFR 51 (248)
T ss_dssp S---BBTT----HHHHHHHHHHHH
T ss_pred ccCcCCCCCccHHHHHHHHHHHHH
Confidence 456688776778888888877765
No 11
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=23.14 E-value=66 Score=23.20 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=35.0
Q ss_pred CCCCCCccccccccCC-----C-------hhhhhhhhhcCcchHHHHHHHHHhcccc
Q 047389 33 SMKPGYDFATRLDVRG-----G-------LTECWNTLMKLKSCSNEIVIFFLNSQAD 77 (89)
Q Consensus 33 ~~~~~~~l~~rl~~~g-----~-------~~~CWssl~~l~~C~~EI~~~flnG~~~ 77 (89)
+|.|++....+++++| + ..+=|+|-.+++.|.-.|.-....|+..
T Consensus 25 ~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~r 81 (122)
T KOG0897|consen 25 FMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGAR 81 (122)
T ss_pred CCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhcccee
Confidence 4447777777776444 1 2457999999999999999999999865
No 12
>PF15331 TP53IP5: Cellular tumour antigen p53-inducible 5
Probab=20.80 E-value=35 Score=26.80 Aligned_cols=11 Identities=36% Similarity=1.277 Sum_probs=9.4
Q ss_pred hhhhhhhcCcc
Q 047389 52 ECWNTLMKLKS 62 (89)
Q Consensus 52 ~CWssl~~l~~ 62 (89)
.||.||+.+|.
T Consensus 42 rCW~Sll~VPk 52 (220)
T PF15331_consen 42 RCWNSLLRVPK 52 (220)
T ss_pred HHHHHHhcccc
Confidence 49999999874
Done!