Query 047389
Match_columns 89
No_of_seqs 77 out of 79
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 18:42:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebo_A Ebola virus envelope gl 28.8 25 0.00085 22.2 1.5 9 78-86 48-56 (74)
2 1ebo_A Ebola virus envelope pr 19.1 22 0.00076 24.6 -0.1 8 78-85 85-92 (131)
3 3s88_J GP2, GP2, envelope glyc 15.4 42 0.0014 24.2 0.5 7 78-84 132-138 (167)
4 1afh_A Maize nonspecific lipid 12.8 77 0.0026 19.7 1.2 31 53-88 4-35 (93)
5 2ljo_A Non-specific lipid-tran 12.7 78 0.0027 19.9 1.2 31 53-88 4-34 (93)
6 1bwo_A NS-LTP1, nonspecific li 12.1 83 0.0028 19.4 1.2 31 53-88 3-33 (90)
7 2alg_A Non-specific lipid tran 11.7 77 0.0026 19.6 1.0 31 53-88 4-34 (92)
8 2nrg_A Intrinsic membrane prot 10.8 2.8E+02 0.0094 17.8 3.4 15 36-50 63-77 (82)
9 1v90_A Delta-paluit1, delta-pa 10.6 50 0.0017 18.6 -0.2 9 78-86 13-21 (38)
10 1l6h_A LTP2, non-specific lipi 10.6 1.4E+02 0.0047 17.5 1.8 12 77-88 20-31 (69)
No 1
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=28.78 E-value=25 Score=22.24 Aligned_cols=9 Identities=44% Similarity=0.992 Sum_probs=7.2
Q ss_pred cChhhhhhh
Q 047389 78 IGPDCCRVI 86 (89)
Q Consensus 78 iGp~CCkAi 86 (89)
+||+||-.+
T Consensus 48 lgpdc~i~~ 56 (74)
T 2ebo_A 48 LGPDCAIEP 56 (74)
T ss_dssp HGGGGGCCC
T ss_pred cCCccccCH
Confidence 999999543
No 2
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=19.14 E-value=22 Score=24.60 Aligned_cols=8 Identities=50% Similarity=1.111 Sum_probs=6.7
Q ss_pred cChhhhhh
Q 047389 78 IGPDCCRV 85 (89)
Q Consensus 78 iGp~CCkA 85 (89)
+||+||-.
T Consensus 85 LGPdCcIe 92 (131)
T 1ebo_A 85 LGPDCRIE 92 (131)
T ss_dssp HGGGGGCC
T ss_pred cCCccccC
Confidence 99999953
No 3
>3s88_J GP2, GP2, envelope glycoprotein; glycosylation, viral membrane, immune system-viral protein C; HET: NAG; 3.35A {Sudan ebolavirus} PDB: 3ve0_J* 3csy_J* 2lcy_A 2lcz_A
Probab=15.45 E-value=42 Score=24.24 Aligned_cols=7 Identities=71% Similarity=2.010 Sum_probs=6.2
Q ss_pred cChhhhh
Q 047389 78 IGPDCCR 84 (89)
Q Consensus 78 iGp~CCk 84 (89)
+||+||-
T Consensus 132 lgp~CCi 138 (167)
T 3s88_J 132 LGPDCCI 138 (167)
T ss_dssp SCCSSCC
T ss_pred CCCcccc
Confidence 9999994
No 4
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=12.80 E-value=77 Score=19.65 Aligned_cols=31 Identities=16% Similarity=0.508 Sum_probs=18.4
Q ss_pred hhhhhhcCcchHHHHHHHHHhcccc-cChhhhhhhhh
Q 047389 53 CWNTLMKLKSCSNEIVIFFLNSQAD-IGPDCCRVIDH 88 (89)
Q Consensus 53 CWssl~~l~~C~~EI~~~flnG~~~-iGp~CCkAi~~ 88 (89)
|=..+.++..|.. ++.|... -.++||.+++.
T Consensus 4 C~~v~~~L~pCl~-----y~~~~~~~Ps~~CC~gv~~ 35 (93)
T 1afh_A 4 CGQVASAIAPCIS-----YARGQGSGPSAGCCSGVRS 35 (93)
T ss_dssp SHHHHHHHGGGHH-----HHTTSCCSCCHHHHHHHHH
T ss_pred hHHHHHhccCcHH-----HHcCCCCCChHHHHHHHHH
Confidence 4444555556654 3344434 66689999875
No 5
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=12.67 E-value=78 Score=19.92 Aligned_cols=31 Identities=23% Similarity=0.595 Sum_probs=18.4
Q ss_pred hhhhhhcCcchHHHHHHHHHhcccccChhhhhhhhh
Q 047389 53 CWNTLMKLKSCSNEIVIFFLNSQADIGPDCCRVIDH 88 (89)
Q Consensus 53 CWssl~~l~~C~~EI~~~flnG~~~iGp~CCkAi~~ 88 (89)
|=+.+.++-.|. .++.|.....+.||..++.
T Consensus 4 C~~v~~~L~pCl-----~Yv~g~~~p~~~CC~gv~~ 34 (93)
T 2ljo_A 4 CGAVTSDLSPCL-----TYLTGGPGPSPQCCGGVKK 34 (93)
T ss_dssp SHHHHHHHHHHH-----HHHTTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHhHH-----HHHcCCCCCCCchhhHHHH
Confidence 334444444553 3445554588999998764
No 6
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=12.14 E-value=83 Score=19.42 Aligned_cols=31 Identities=13% Similarity=0.416 Sum_probs=19.4
Q ss_pred hhhhhhcCcchHHHHHHHHHhcccccChhhhhhhhh
Q 047389 53 CWNTLMKLKSCSNEIVIFFLNSQADIGPDCCRVIDH 88 (89)
Q Consensus 53 CWssl~~l~~C~~EI~~~flnG~~~iGp~CCkAi~~ 88 (89)
|=..+.++..|..-+ .|.....++||.+++.
T Consensus 3 C~~v~~~L~pCl~y~-----~~~~~Ps~~CC~~lk~ 33 (90)
T 1bwo_A 3 CGHVDSLVRPCLSYV-----QGGPGPSGQCCDGVKN 33 (90)
T ss_dssp HHHHHHHHGGGHHHH-----TTCSCCCHHHHHHHHH
T ss_pred HHHHHHhhcccHHHH-----cCCCCCCHHHhHHHHH
Confidence 445556666776533 3333377789999874
No 7
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=11.72 E-value=77 Score=19.59 Aligned_cols=31 Identities=23% Similarity=0.555 Sum_probs=19.3
Q ss_pred hhhhhhcCcchHHHHHHHHHhcccccChhhhhhhhh
Q 047389 53 CWNTLMKLKSCSNEIVIFFLNSQADIGPDCCRVIDH 88 (89)
Q Consensus 53 CWssl~~l~~C~~EI~~~flnG~~~iGp~CCkAi~~ 88 (89)
|=..+.++..|..-+ +|.....++||.+++.
T Consensus 4 C~~v~~~L~pCl~y~-----~~~~~p~~~CC~~lk~ 34 (92)
T 2alg_A 4 CGQVSSSLAPCIPYV-----RGGGAVPPACCNGIRN 34 (92)
T ss_dssp HHHHHHHHGGGHHHH-----HHCSCCCHHHHHHHHH
T ss_pred hHHHHHhccCcHHHH-----cCCCCCCHHHHHHHHH
Confidence 445555666676533 3333477899999875
No 8
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=10.80 E-value=2.8e+02 Score=17.83 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=8.6
Q ss_pred CCCccccccccCCCh
Q 047389 36 PGYDFATRLDVRGGL 50 (89)
Q Consensus 36 ~~~~l~~rl~~~g~~ 50 (89)
|.|+....|+.+-++
T Consensus 63 P~P~~~~~~~~~~~~ 77 (82)
T 2nrg_A 63 PAPNITGALETGIEL 77 (82)
T ss_dssp SSSSSCSSSSSSCCT
T ss_pred CCCccchhHHHHHHH
Confidence 566667776633343
No 9
>1v90_A Delta-paluit1, delta-palutoxin IT1; insecticidal toxin, spider toxin, ICK fold, structure; NMR {Paracoelotes luctuosus} PDB: 1v91_A
Probab=10.57 E-value=50 Score=18.62 Aligned_cols=9 Identities=44% Similarity=1.232 Sum_probs=7.0
Q ss_pred cChhhhhhh
Q 047389 78 IGPDCCRVI 86 (89)
Q Consensus 78 iGp~CCkAi 86 (89)
-||.||+.+
T Consensus 13 ~gp~CC~gy 21 (38)
T 1v90_A 13 SGPSCCDGF 21 (38)
T ss_dssp TCSCCCTTB
T ss_pred cCCcccCCc
Confidence 688898764
No 10
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=10.55 E-value=1.4e+02 Score=17.51 Aligned_cols=12 Identities=17% Similarity=0.542 Sum_probs=9.4
Q ss_pred ccChhhhhhhhh
Q 047389 77 DIGPDCCRVIDH 88 (89)
Q Consensus 77 ~iGp~CCkAi~~ 88 (89)
...++||.+++.
T Consensus 20 ~Ps~~CC~~lk~ 31 (69)
T 1l6h_A 20 RPTAACCSSLRA 31 (69)
T ss_dssp STTHHHHHHHHH
T ss_pred CCCHHHHHhhCC
Confidence 478889998874
Done!