Query 047389
Match_columns 89
No_of_seqs 77 out of 79
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 18:42:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047389.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047389hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fk5a_ a.52.1.1 (A:) Plant no 20.3 18 0.0013 21.2 1.2 31 53-88 4-35 (93)
2 d1mida_ a.52.1.1 (A:) Plant no 18.8 20 0.0015 20.9 1.2 31 53-88 3-33 (91)
3 d1k8rb_ d.15.1.5 (B:) Protein 7.3 82 0.006 19.1 1.4 16 57-72 14-29 (95)
4 d2bbga_ g.6.1.1 (A:) Amb V all 6.8 38 0.0028 17.7 -0.4 9 78-86 14-22 (40)
5 d2axtu1 a.60.12.2 (U:37-134) P 5.6 69 0.005 19.2 0.3 46 22-72 25-73 (98)
6 d1vz0a1 a.4.14.1 (A:116-208) P 4.9 94 0.0068 17.9 0.5 25 57-81 39-63 (93)
7 d1jmkc_ c.69.1.22 (C:) Surfact 4.8 1.7E+02 0.013 16.6 1.8 13 64-76 218-230 (230)
8 d1cmra_ g.3.7.2 (A:) Charybdot 4.7 67 0.0049 15.9 -0.2 7 51-57 5-11 (31)
9 d2fyia1 c.94.1.1 (A:88-307) Ly 4.4 1.7E+02 0.013 16.9 1.6 16 64-79 44-59 (220)
10 d1o13a_ c.55.5.1 (A:) Hypothet 4.1 2E+02 0.015 15.7 1.7 13 63-75 95-107 (107)
No 1
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=20.28 E-value=18 Score=21.19 Aligned_cols=31 Identities=16% Similarity=0.469 Sum_probs=20.5
Q ss_pred hhhhhhcCcchHHHHHHHHHhcccc-cChhhhhhhhh
Q 047389 53 CWNTLMKLKSCSNEIVIFFLNSQAD-IGPDCCRVIDH 88 (89)
Q Consensus 53 CWssl~~l~~C~~EI~~~flnG~~~-iGp~CCkAi~~ 88 (89)
|=..+.++-.|. .|++|... -.+.||.+++.
T Consensus 4 C~~v~~~l~pCl-----~Yltg~~~~Ps~~CC~gv~~ 35 (93)
T d1fk5a_ 4 CGQVASAIAPCI-----SYARGQGSGPSAGCCSGVRS 35 (93)
T ss_dssp HHHHHHHHGGGH-----HHHTTCSSSCCHHHHHHHHH
T ss_pred HHHHHHHhhhhH-----HHHhCCCCCCCCchhHHHHH
Confidence 445555566664 35666655 78899998874
No 2
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=18.84 E-value=20 Score=20.91 Aligned_cols=31 Identities=19% Similarity=0.558 Sum_probs=21.8
Q ss_pred hhhhhhcCcchHHHHHHHHHhcccccChhhhhhhhh
Q 047389 53 CWNTLMKLKSCSNEIVIFFLNSQADIGPDCCRVIDH 88 (89)
Q Consensus 53 CWssl~~l~~C~~EI~~~flnG~~~iGp~CCkAi~~ 88 (89)
|=+.+.++-.|.. |++|.....+.||.+++.
T Consensus 3 C~~v~~~l~pCl~-----Yl~g~~~P~~~CC~gv~~ 33 (91)
T d1mida_ 3 CGQVDSKMKPCLT-----YVQGGPGPSGECCNGVRD 33 (91)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhHH-----HHcCCCCCCcchhhhHHH
Confidence 5556666677754 456665599999998864
No 3
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=7.32 E-value=82 Score=19.07 Aligned_cols=16 Identities=6% Similarity=0.061 Sum_probs=12.7
Q ss_pred hhcCcchHHHHHHHHH
Q 047389 57 LMKLKSCSNEIVIFFL 72 (89)
Q Consensus 57 l~~l~~C~~EI~~~fl 72 (89)
..|+.||.+||..-.+
T Consensus 14 ~vni~gC~~ai~~~~L 29 (95)
T d1k8rb_ 14 AVQSRGDYQKTLAIAL 29 (95)
T ss_dssp EEECCSCHHHHHHHHH
T ss_pred EEEeccCHHHHHHHHH
Confidence 6799999999766554
No 4
>d2bbga_ g.6.1.1 (A:) Amb V allergen {Giant ragweed (Ambrosia trifida), pollen [TaxId: 4214]}
Probab=6.76 E-value=38 Score=17.68 Aligned_cols=9 Identities=44% Similarity=1.158 Sum_probs=6.5
Q ss_pred cChhhhhhh
Q 047389 78 IGPDCCRVI 86 (89)
Q Consensus 78 iGp~CCkAi 86 (89)
+|..||.-|
T Consensus 14 vgkyccspi 22 (40)
T d2bbga_ 14 VGKYCCSPI 22 (40)
T ss_dssp TTSEEECSS
T ss_pred ccceecccc
Confidence 788888654
No 5
>d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.65 E-value=69 Score=19.25 Aligned_cols=46 Identities=11% Similarity=0.002 Sum_probs=25.3
Q ss_pred hhccccccccCCCCCCCccccccccCCChhhhhhhhhcCcchHH---HHHHHHH
Q 047389 22 NATTRNDRLNNSMKPGYDFATRLDVRGGLTECWNTLMKLKSCSN---EIVIFFL 72 (89)
Q Consensus 22 s~~a~~~~p~~~~~~~~~l~~rl~~~g~~~~CWssl~~l~~C~~---EI~~~fl 72 (89)
++..+.++|.. .|.++.|+- ..+..+=++.|++++|=.. |+++-.+
T Consensus 25 s~~eL~~lpGI----g~~~A~~Iv-~~gpf~s~edL~~V~GIg~~~~e~lk~yl 73 (98)
T d2axtu1 25 NIAAFIQYRGL----YPTLAKLIV-KNAPYESVEDVLNIPGLTERQKQILRENL 73 (98)
T ss_dssp CGGGGTTSTTC----THHHHHHHH-HSCCCSSGGGGGGCTTCCTTHHHHHHHHG
T ss_pred cHHHHHHhhhh----cHHHHHHHH-HcCCcCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 33445555544 566777765 2344555666777776443 4555433
No 6
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=4.85 E-value=94 Score=17.94 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=18.4
Q ss_pred hhcCcchHHHHHHHHHhcccccChh
Q 047389 57 LMKLKSCSNEIVIFFLNSQADIGPD 81 (89)
Q Consensus 57 l~~l~~C~~EI~~~flnG~~~iGp~ 81 (89)
.+.+=.+..||.+.+.+|+..+|++
T Consensus 39 ~LrLl~L~~~v~~~l~~g~Is~ghA 63 (93)
T d1vz0a1 39 ALRLLQLPPEALEALERGEITAGHA 63 (93)
T ss_dssp HHHGGGSCHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccHHHH
Confidence 3344456688999999999877764
No 7
>d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]}
Probab=4.77 E-value=1.7e+02 Score=16.62 Aligned_cols=13 Identities=38% Similarity=0.618 Sum_probs=9.2
Q ss_pred HHHHHHHHHhccc
Q 047389 64 SNEIVIFFLNSQA 76 (89)
Q Consensus 64 ~~EI~~~flnG~~ 76 (89)
+.+++..|+++|+
T Consensus 218 va~~I~~~L~~~~ 230 (230)
T d1jmkc_ 218 NAGILLEFLNTQT 230 (230)
T ss_dssp HHHHHHHHHTCBC
T ss_pred HHHHHHHHHhhcC
Confidence 4567777788774
No 8
>d1cmra_ g.3.7.2 (A:) Charybdotoxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]}
Probab=4.74 E-value=67 Score=15.89 Aligned_cols=7 Identities=43% Similarity=1.369 Sum_probs=4.9
Q ss_pred hhhhhhh
Q 047389 51 TECWNTL 57 (89)
Q Consensus 51 ~~CWssl 57 (89)
.+|||--
T Consensus 5 kecwsvc 11 (31)
T d1cmra_ 5 KECWSVC 11 (31)
T ss_dssp GGSSSSS
T ss_pred HHHHHHH
Confidence 5799854
No 9
>d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]}
Probab=4.40 E-value=1.7e+02 Score=16.93 Aligned_cols=16 Identities=44% Similarity=0.713 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcccccC
Q 047389 64 SNEIVIFFLNSQADIG 79 (89)
Q Consensus 64 ~~EI~~~flnG~~~iG 79 (89)
..|+.+.+.+|+.++|
T Consensus 44 ~~~~~~~l~~g~~Di~ 59 (220)
T d2fyia1 44 PQEIATLLQNGEADIG 59 (220)
T ss_dssp HHHHHHHHHHTSCSEE
T ss_pred cHHHHHHHHhhhhhhh
Confidence 5678888999998744
No 10
>d1o13a_ c.55.5.1 (A:) Hypothetical protein TM1816 {Thermotoga maritima [TaxId: 2336]}
Probab=4.11 E-value=2e+02 Score=15.68 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=9.2
Q ss_pred hHHHHHHHHHhcc
Q 047389 63 CSNEIVIFFLNSQ 75 (89)
Q Consensus 63 C~~EI~~~flnG~ 75 (89)
=+.|+++.+++||
T Consensus 95 ~v~eal~~~~~G~ 107 (107)
T d1o13a_ 95 TVEEVVNQYLSGQ 107 (107)
T ss_dssp BHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCC
Confidence 3567777777776
Done!