BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047392
(258 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449464228|ref|XP_004149831.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77405-like [Cucumis sativus]
gi|449518241|ref|XP_004166151.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77405-like [Cucumis sativus]
Length = 445
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/252 (71%), Positives = 206/252 (81%), Gaps = 3/252 (1%)
Query: 9 SNHTCLVQQVLPLILKNVPFDAKL--AASTTKTQNPFTIESVADVLKSIPRFFFQSPRSI 66
SNH LV Q+L +LKN PFD + AAST+ T ++ +SV+DVL+S+PRFFFQS RSI
Sbjct: 10 SNHR-LVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRFFFQSARSI 68
Query: 67 GRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFF 126
G Q GFRHRTPLKQR LK+EA NNVLVLGP A+R+P K LG+NKA EF++WVE F
Sbjct: 69 GTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEFFYWVETHF 128
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186
F H+E+TC+EM V ARGN + GLWDFLKEMSRR NG LVTT+T+TCLIKVLGEEGLVN
Sbjct: 129 GFQHDEITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKVLGEEGLVN 188
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
EAL FYRMKQF C+PDVYAYN VIN LCR+GNF KARFLLEQMELPGFRCPPD++TYTI
Sbjct: 189 EALTAFYRMKQFHCKPDVYAYNTVINVLCRIGNFKKARFLLEQMELPGFRCPPDIFTYTI 248
Query: 247 LISSYCKYGMQT 258
LISSYCKY +QT
Sbjct: 249 LISSYCKYSLQT 260
>gi|297839599|ref|XP_002887681.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297333522|gb|EFH63940.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 459
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 162/259 (62%), Positives = 208/259 (80%), Gaps = 6/259 (2%)
Query: 1 MIVSKPLNSNHTCLVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
M S+PL + ++ Q++ +++N PFDA LA+ST NP+T + V+DVL+SIPRFFF
Sbjct: 1 MKPSQPLCNR---IIDQLIAAMIQNRPFDAVLASSTVA--NPWTQQLVSDVLRSIPRFFF 55
Query: 61 QSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYH 120
SPRSIGRQ GFRHR+PLKQR L E+ + VLVLGP AY +P+K++LG+ KA EF+
Sbjct: 56 ISPRSIGRQKGFRHRSPLKQRNLSDESQRRRSEVLVLGPGAYIDPKKISLGLQKALEFFF 115
Query: 121 WVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE-LVTTSTVTCLIKVL 179
W+E F F HNE+TC++M + A+GN+ KGLWDFL+++SRR NG+ +VTT+++TCL+K L
Sbjct: 116 WIEIHFGFGHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCL 175
Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
GEEG V EALATFYRMK++ C+PDVYAYN +INALCRVGNF KARFLL+QM+LPGFR PP
Sbjct: 176 GEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPP 235
Query: 240 DVYTYTILISSYCKYGMQT 258
D YTYTILISSYC+YGMQT
Sbjct: 236 DTYTYTILISSYCRYGMQT 254
>gi|11079488|gb|AAG29200.1|AC078898_10 hypothetical protein [Arabidopsis thaliana]
Length = 410
Score = 346 bits (888), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 162/259 (62%), Positives = 206/259 (79%), Gaps = 6/259 (2%)
Query: 1 MIVSKPLNSNHTCLVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
M S+PL + +V Q++ +++N PFDA LA+ST P+T + V+DVL SIPRFFF
Sbjct: 1 MKPSQPLCNR---IVDQLITAMIQNRPFDAVLASSTVA--KPWTQQLVSDVLHSIPRFFF 55
Query: 61 QSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYH 120
SPRSIGRQ GFRHR+PLKQR L E+ + VLVLGP AY +P+KV++G+ KA EF+
Sbjct: 56 ISPRSIGRQKGFRHRSPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFF 115
Query: 121 WVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE-LVTTSTVTCLIKVL 179
W+E F F HNE+TC++M + A+GN+ KGLWDFL+++SRR NG+ +VTT+++TCL+K L
Sbjct: 116 WIETHFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCL 175
Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
GEEG V EALATFYRMK++ C+PDVYAYN +INALCRVGNF KARFLL+QM+LPGFR PP
Sbjct: 176 GEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPP 235
Query: 240 DVYTYTILISSYCKYGMQT 258
D YTYTILISSYC+YGMQT
Sbjct: 236 DTYTYTILISSYCRYGMQT 254
>gi|145337672|ref|NP_177865.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122244095|sp|Q1PFC5.1|PP130_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g77405
gi|91806103|gb|ABE65780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332197853|gb|AEE35974.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 458
Score = 345 bits (886), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 162/259 (62%), Positives = 206/259 (79%), Gaps = 6/259 (2%)
Query: 1 MIVSKPLNSNHTCLVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
M S+PL + +V Q++ +++N PFDA LA+ST P+T + V+DVL SIPRFFF
Sbjct: 1 MKPSQPLCNR---IVDQLITAMIQNRPFDAVLASSTVA--KPWTQQLVSDVLHSIPRFFF 55
Query: 61 QSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYH 120
SPRSIGRQ GFRHR+PLKQR L E+ + VLVLGP AY +P+KV++G+ KA EF+
Sbjct: 56 ISPRSIGRQKGFRHRSPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFF 115
Query: 121 WVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE-LVTTSTVTCLIKVL 179
W+E F F HNE+TC++M + A+GN+ KGLWDFL+++SRR NG+ +VTT+++TCL+K L
Sbjct: 116 WIETHFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCL 175
Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
GEEG V EALATFYRMK++ C+PDVYAYN +INALCRVGNF KARFLL+QM+LPGFR PP
Sbjct: 176 GEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPP 235
Query: 240 DVYTYTILISSYCKYGMQT 258
D YTYTILISSYC+YGMQT
Sbjct: 236 DTYTYTILISSYCRYGMQT 254
>gi|297734359|emb|CBI15606.3| unnamed protein product [Vitis vinifera]
Length = 381
Score = 340 bits (871), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 164/259 (63%), Positives = 196/259 (75%), Gaps = 14/259 (5%)
Query: 1 MIVSKPLNSNHTCLVQQVLPLILKNVPFDAKLAASTTKTQN-PFTIESVADVLKSIPRFF 59
MI SKP + + LV+QVL +++N P DA S K+ N P+T +SV++VL+SIPR F
Sbjct: 1 MIASKPRYHHRSSLVKQVLAAMVQNCPLDA----SPNKSCNQPWTTDSVSEVLRSIPRLF 56
Query: 60 FQSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFY 119
FQSPRSIGRQ GFRHR+PLKQR L +E + YR+P KV LG+ KA EFY
Sbjct: 57 FQSPRSIGRQKGFRHRSPLKQRNLYQEPNKFHR---------YRDPHKVKLGVEKAMEFY 107
Query: 120 HWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVL 179
WVE F F HNE+TC+EMG V ARGN +K LW+FL EM+R+G +VTT+T+TCL+KVL
Sbjct: 108 SWVETQFGFSHNEMTCREMGCVLARGNRLKVLWEFLHEMARKGGNGVVTTATITCLMKVL 167
Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
GEEGL N+ALA FYRMKQF C+PDVYAYN +I ALCRVGNF KARFLLEQMELPGFRCPP
Sbjct: 168 GEEGLANQALAAFYRMKQFHCKPDVYAYNTIIYALCRVGNFRKARFLLEQMELPGFRCPP 227
Query: 240 DVYTYTILISSYCKYGMQT 258
D +TYTILI SYCKY +QT
Sbjct: 228 DSFTYTILIGSYCKYSLQT 246
>gi|225456224|ref|XP_002279168.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77405-like [Vitis vinifera]
Length = 432
Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 162/258 (62%), Positives = 194/258 (75%), Gaps = 12/258 (4%)
Query: 1 MIVSKPLNSNHTCLVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
MI SKP + + LV+QVL +++N P DA S + P+T +SV++VL+SIPR FF
Sbjct: 1 MIASKPRYHHRSSLVKQVLAAMVQNCPLDASPNKSCNQ---PWTTDSVSEVLRSIPRLFF 57
Query: 61 QSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYH 120
QSPRSIGRQ GFRHR+PLKQR L +E + YR+P KV LG+ KA EFY
Sbjct: 58 QSPRSIGRQKGFRHRSPLKQRNLYQEPNKFHR---------YRDPHKVKLGVEKAMEFYS 108
Query: 121 WVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLG 180
WVE F F HNE+TC+EMG V ARGN +K LW+FL EM+R+G +VTT+T+TCL+KVLG
Sbjct: 109 WVETQFGFSHNEMTCREMGCVLARGNRLKVLWEFLHEMARKGGNGVVTTATITCLMKVLG 168
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
EEGL N+ALA FYRMKQF C+PDVYAYN +I ALCRVGNF KARFLLEQMELPGFRCPPD
Sbjct: 169 EEGLANQALAAFYRMKQFHCKPDVYAYNTIIYALCRVGNFRKARFLLEQMELPGFRCPPD 228
Query: 241 VYTYTILISSYCKYGMQT 258
+TYTILI SYCKY +QT
Sbjct: 229 SFTYTILIGSYCKYSLQT 246
>gi|255558614|ref|XP_002520332.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540551|gb|EEF42118.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 154/257 (59%), Positives = 200/257 (77%), Gaps = 8/257 (3%)
Query: 5 KPLNSNHTCLVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPR 64
KP+N+N L+ QV+ L++++ PFD +LA+STT + + ++DVL+SIPRFFFQS R
Sbjct: 4 KPINTN---LINQVISLMIQHRPFDIQLASSTTTSLLSSNL--ISDVLRSIPRFFFQSTR 58
Query: 65 SIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVER 124
S+GRQ+ RHR+PLKQR LK+E N +L+LGPAAY++P++V LG+ KA EF++WVE
Sbjct: 59 SVGRQSTTRHRSPLKQRSLKQETHKHNNKLLILGPAAYKDPKRVKLGVFKAMEFFYWVET 118
Query: 125 FFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRR---GNGELVTTSTVTCLIKVLGE 181
F H E TC+EMG V AR N + LW+FL+EM++R +LVTT+ VTCLIKVLGE
Sbjct: 119 NCDFIHTESTCREMGFVLARANRLDKLWNFLQEMAKREVFDGRKLVTTNAVTCLIKVLGE 178
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
EGLV EAL+ FYRMK++ C+PDVYAYN +I ALCR+GNF KAR+LLEQMELPGF CPPD
Sbjct: 179 EGLVKEALSLFYRMKKYHCKPDVYAYNTIIYALCRIGNFKKARYLLEQMELPGFYCPPDT 238
Query: 242 YTYTILISSYCKYGMQT 258
+TYTI+ISSYCKY +QT
Sbjct: 239 FTYTIMISSYCKYSLQT 255
>gi|356570227|ref|XP_003553291.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77405-like [Glycine max]
Length = 732
Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 139/259 (53%), Positives = 180/259 (69%), Gaps = 8/259 (3%)
Query: 1 MIVSKPLNSNHTCLVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
MI + L H L Q L L++K++PFDA + +T ++V +VL+ I R+
Sbjct: 287 MIRTNSLRHFHKHLASQTLVLVIKDLPFDAHPPPPSPSPPP-WTNDAVTEVLRLISRYTL 345
Query: 61 QSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVT-LGINKATEFY 119
QSPRSIGRQ FRHRTPL+QR L E + +N L+LGPAA+ +P+K LG KA EF+
Sbjct: 346 QSPRSIGRQHTFRHRTPLRQRNLNLEHHKLRSNTLLLGPAAHLDPRKAHHLGPLKALEFF 405
Query: 120 HWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVL 179
WVE F+F H+E TC+E+ + R N +K LW FLK VTT+TVTCLIK+L
Sbjct: 406 RWVEARFNFPHSEPTCRELACLLGRANALKPLWHFLKHSPH------VTTATVTCLIKLL 459
Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
GE+ L +EAL TF+RMKQFRC+PD ++YN +I+ALCRVG F KAR LL+QMELPGFRCPP
Sbjct: 460 GEQALADEALLTFHRMKQFRCKPDTHSYNTLIHALCRVGKFTKARSLLQQMELPGFRCPP 519
Query: 240 DVYTYTILISSYCKYGMQT 258
D +TYTILISSYC++G+ T
Sbjct: 520 DTFTYTILISSYCRHGILT 538
>gi|356560456|ref|XP_003548508.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g77405-like [Glycine max]
Length = 477
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 160/217 (73%), Gaps = 7/217 (3%)
Query: 43 FTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAY 102
++ ++V +VL+SI + Q PRSIGRQ FRHRTPL+QR L E + NN L+LGP A+
Sbjct: 71 WSNDAVTEVLRSISHYTLQFPRSIGRQHTFRHRTPLRQRNLNLEHRKLRNNTLLLGPTAH 130
Query: 103 RNPQKVT-LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRR 161
+P K LG KA EF+HW+E F+F H+E TC+E+ + AR +K LW FLK
Sbjct: 131 LDPYKAHHLGPLKALEFFHWLESRFNFPHSEPTCRELACLLARATALKPLWHFLKHSPH- 189
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
VTT+TVTCLIK+L E+GL +EAL TF+RMKQFRCRPD ++YN +I+ALCRVGNF
Sbjct: 190 -----VTTATVTCLIKLLSEQGLADEALLTFHRMKQFRCRPDTHSYNTLIHALCRVGNFA 244
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
KAR +L+QMELPGFRCPPD +TY+ILISSYC++G+ T
Sbjct: 245 KARSILQQMELPGFRCPPDTFTYSILISSYCRHGILT 281
>gi|357466379|ref|XP_003603474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492522|gb|AES73725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 528
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/250 (45%), Positives = 155/250 (62%), Gaps = 30/250 (12%)
Query: 14 LVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTG-F 72
L +Q L ++K++PF+ ++ + +T ++V ++L+ I R+ FQS IG Q F
Sbjct: 15 LAKQALVAVIKDIPFET----TSPPSNLIWTPDAVIELLRFISRYSFQS---IGCQNNPF 67
Query: 73 RHRT-PLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHN 131
RHR+ PL + NP L + K+ EF HW+ F+F H
Sbjct: 68 RHRSVPLSN-----------------FKHPHTNPYLTNLSLRKSHEFLHWIHSHFNFLHT 110
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRR----GNGELVTTSTVTCLIKVLGEEGLVNE 187
+ T +EM I+ A+ +N LW FLK S R + +VTT TVTCLIK+LGE+GL E
Sbjct: 111 QSTTREMAILIAKSHNTNALWTFLKHFSIRLHTNDHNTIVTTPTVTCLIKLLGEQGLAKE 170
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
AL TFYRM+QF C+PDV AYN +INA+C VGNF KAR LL+QMELPGF PPDV+TYT+L
Sbjct: 171 ALLTFYRMRQFGCKPDVQAYNALINAMCSVGNFTKARHLLQQMELPGFHSPPDVFTYTVL 230
Query: 248 ISSYCKYGMQ 257
ISSYC+YG++
Sbjct: 231 ISSYCRYGVK 240
>gi|257209027|emb|CBB36506.1| Oryza sativa fertility restorer-like protein AAP03402 [Saccharum
hybrid cultivar R570]
Length = 418
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 117/246 (47%), Gaps = 32/246 (13%)
Query: 14 LVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF-QSPRSIGRQTGF 72
LV Q+L +L+ FDA L S T F+ S+A L +IPR +S R + Q F
Sbjct: 20 LVPQLLVALLQRRRFDATLRVSPTFPG--FSPHSIAAALDAIPRLVLPRSSRRLCPQRPF 77
Query: 73 RHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNE 132
P+A +P L F W H +
Sbjct: 78 --------------------------PSAS-SPSNRRLSAAFTLAFLSWSHDHAHAHPVQ 110
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
++ + L + + R + LV+T+ +T +I+ LGEEGL ALATF
Sbjct: 111 ISEAPLRAAALALTRAHALSPLFRLL--RAHAPLVSTAAITDVIRALGEEGLPRHALATF 168
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+RM+Q RC PD YN +I ALC+ G F ARFLL+QME PG RC PD YTYT+LIS YC
Sbjct: 169 HRMRQLRCAPDAQCYNTLIAALCQNGRFRDARFLLDQMERPGARCKPDTYTYTVLISWYC 228
Query: 253 KYGMQT 258
+ G+ T
Sbjct: 229 RIGVGT 234
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 13/109 (11%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGL-----------VNEALATFYRMKQFRCRP 202
L +M R G T T T LI G+ + EA F RM + P
Sbjct: 202 LLDQMERPGARCKPDTYTYTVLISWYCRIGVGTGCRKAARRRIYEAGRLFRRMGEKGLEP 261
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
DV YN +IN LC+ +A + ++M G C P+ TY I Y
Sbjct: 262 DVVTYNCLINGLCKTYRVERAHEVFDEMLRKG--CSPNRVTYNSFIRYY 308
>gi|293334435|ref|NP_001169564.1| uncharacterized protein LOC100383443 [Zea mays]
gi|224030115|gb|ACN34133.1| unknown [Zea mays]
gi|414872643|tpg|DAA51200.1| TPA: hypothetical protein ZEAMMB73_501808 [Zea mays]
Length = 424
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 120/246 (48%), Gaps = 32/246 (13%)
Query: 14 LVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQ-SPRSIGRQTGF 72
LV Q+L +L+ FD L S T F+ S+A L +IPRF SPR + Q F
Sbjct: 26 LVPQLLVALLQRRRFDVTLRVSPTFPG--FSPHSIAAALAAIPRFLLPGSPRRLCPQRPF 83
Query: 73 RHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNE 132
P + + A+ +P V L +E
Sbjct: 84 ----PSASHPSNRRLAAALTLAFLSWSHAHAHPHPVPL--------------------SE 119
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
+ + R + + L+ L R + +V+T+ +T +I+VLGEEGL ALA F
Sbjct: 120 APLRAAALALTRAHALSPLFRLL-----RAHASVVSTAALTDVIRVLGEEGLPRHALAAF 174
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+RM+Q C PD YN +I ALCR G F+ ARFLL+QME PG RC PD YTYT+LIS YC
Sbjct: 175 HRMRQLHCAPDAQCYNTLIAALCRNGRFSDARFLLDQMERPGARCKPDTYTYTVLISWYC 234
Query: 253 KYGMQT 258
+ G+ T
Sbjct: 235 RIGVGT 240
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 13/109 (11%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGL-----------VNEALATFYRMKQFRCRP 202
L +M R G T T T LI G+ + EA F RM + P
Sbjct: 208 LLDQMERPGARCKPDTYTYTVLISWYCRIGVGTGCRKAARRRIYEAGRLFRRMGEKGLEP 267
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
DV YN +IN LC+ +A + ++M G C P+ TY I Y
Sbjct: 268 DVVTYNCLINGLCKTYRVERAHEMFDEMLRKG--CTPNRVTYNSFIRYY 314
>gi|125545643|gb|EAY91782.1| hypothetical protein OsI_13425 [Oryza sativa Indica Group]
Length = 406
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 71/98 (72%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R + LV+T+ +T +I+ LGEEGL ALA F+R +QF C PD YN ++ ALCR G F
Sbjct: 125 RDHAPLVSTAALTDVIRALGEEGLPRHALAAFHRARQFHCSPDAQCYNTLLAALCRNGRF 184
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
ARFLL+QME PG RC PD YTYT+LISSYC+ G++T
Sbjct: 185 KDARFLLDQMERPGARCGPDSYTYTVLISSYCRIGVET 222
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 51/139 (36%), Gaps = 13/139 (9%)
Query: 124 RFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG 183
R FH + + R K L +M R G + T T LI G
Sbjct: 160 RQFHCSPDAQCYNTLLAALCRNGRFKDARFLLDQMERPGARCGPDSYTYTVLISSYCRIG 219
Query: 184 L-----------VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ + EA F RM + PDV YN +IN LC+ +A + ++M
Sbjct: 220 VETGCRKAARRRIYEAGRLFRRMGEKGLEPDVVTYNCLINGLCKTYRVERAHEVFDEMLR 279
Query: 233 PGFRCPPDVYTYTILISSY 251
G C P+ TY + Y
Sbjct: 280 KG--CSPNRVTYNSFVRYY 296
>gi|115455181|ref|NP_001051191.1| Os03g0736200 [Oryza sativa Japonica Group]
gi|29788856|gb|AAP03402.1| putative fertility restorer-like protein [Oryza sativa Japonica
Group]
gi|108710950|gb|ABF98745.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113549662|dbj|BAF13105.1| Os03g0736200 [Oryza sativa Japonica Group]
gi|125587839|gb|EAZ28503.1| hypothetical protein OsJ_12484 [Oryza sativa Japonica Group]
Length = 406
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 71/98 (72%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R + LV+T+ +T +I+ LGEEGL ALA F+R +QF C PD YN ++ ALCR G F
Sbjct: 125 RDHAPLVSTAALTDVIRALGEEGLPRHALAAFHRGRQFHCSPDAQCYNTLLAALCRNGRF 184
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
ARFLL+QME PG RC PD YTYT+LISSYC+ G++T
Sbjct: 185 KDARFLLDQMERPGARCGPDSYTYTVLISSYCRIGVET 222
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 51/139 (36%), Gaps = 13/139 (9%)
Query: 124 RFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG 183
R FH + + R K L +M R G + T T LI G
Sbjct: 160 RQFHCSPDAQCYNTLLAALCRNGRFKDARFLLDQMERPGARCGPDSYTYTVLISSYCRIG 219
Query: 184 L-----------VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ + EA F RM + PDV YN +IN LC+ +A + ++M
Sbjct: 220 VETGCRKAARRRIYEAGRLFRRMGEKGLEPDVVTYNCLINGLCKTYRVERAHEVFDEMLR 279
Query: 233 PGFRCPPDVYTYTILISSY 251
G C P+ TY + Y
Sbjct: 280 KG--CSPNRVTYNSFVRYY 296
>gi|242038213|ref|XP_002466501.1| hypothetical protein SORBIDRAFT_01g008870 [Sorghum bicolor]
gi|241920355|gb|EER93499.1| hypothetical protein SORBIDRAFT_01g008870 [Sorghum bicolor]
Length = 426
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 118/246 (47%), Gaps = 32/246 (13%)
Query: 14 LVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF-QSPRSIGRQTGF 72
LV Q+L +L++ FDA L S T F+ S+A +L +IPR +S R + Q F
Sbjct: 28 LVPQLLVALLQHRRFDATLRVSPTFPG--FSPHSIAALLHAIPRLVLPRSARRLCPQRPF 85
Query: 73 RHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNE 132
PAA +P L F W H +
Sbjct: 86 --------------------------PAAS-SPSSRRLAAALTLAFLSWSHDHAHARPVQ 118
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
++ + L + + R + LV+T+ +T +I+ LGEEGL ALA F
Sbjct: 119 ISEAPLRAAALALTRAHALSPLFRLL--RAHAPLVSTAALTDVIRALGEEGLPRHALAAF 176
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+RM+Q RC PD YN +I ALC+ G F ARFLL+QME PG RC PD YTYT+LIS YC
Sbjct: 177 HRMRQLRCAPDAQCYNTLIAALCQNGRFRDARFLLDQMERPGARCKPDTYTYTVLISWYC 236
Query: 253 KYGMQT 258
+ G+ T
Sbjct: 237 RIGVGT 242
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 13/109 (11%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGL-----------VNEALATFYRMKQFRCRP 202
L +M R G T T T LI G+ + EA F RM + P
Sbjct: 210 LLDQMERPGARCKPDTYTYTVLISWYCRIGVGTGCRKAARRRIYEAGRLFRRMGEKGLEP 269
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
DV YN +IN LC+ ++A + ++M G C P+ TY I Y
Sbjct: 270 DVVTYNCLINGLCKTYRVDRAHEVFDEMLRKG--CAPNRVTYNSFIRYY 316
>gi|357115353|ref|XP_003559453.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77405-like [Brachypodium distachyon]
Length = 412
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 70/96 (72%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+ LV+T+ +T +I+ LGEEGL EALA F+R +Q RC PD YN +I ALCR G F +
Sbjct: 133 HAPLVSTAALTDVIRALGEEGLPREALAAFHRARQLRCSPDAQCYNTLIAALCRNGRFKE 192
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
ARFLL+QME PG RC PD YTYT+LIS YC+ G+ T
Sbjct: 193 ARFLLDQMERPGARCKPDSYTYTVLISWYCRIGVGT 228
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+ EA F RM + PDV YN +IN LC+ +A + ++M G C P+ TY
Sbjct: 238 IYEAGRLFRRMGEKGLEPDVVTYNCLINGLCKTYRVERAHEVFDEMLKKG--CAPNRVTY 295
Query: 245 TILISSY 251
+ Y
Sbjct: 296 NSFVRYY 302
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT ++ N V ++++EM RG+G + T+ST T LI L E G V +A
Sbjct: 291 NRVTYNSFVRYYSVVNEVDKAVEWMREMVARGHG-VATSSTYTPLIHSLYESGRVGDARR 349
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGN 219
M + P + Y +V NA+ G
Sbjct: 350 FLIEMAETGHLPREHTYKLVKNAIEEAGE 378
>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
R K +G++ +F+ W R ++ H+ T + +W ++EM R
Sbjct: 90 REVMKTDVGVSVKMQFFRWAARKRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNP 149
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+VT ++ +I++LG ++++A+A FY++K +C+P +AYN +I L G + K
Sbjct: 150 VC-VVTPMELSDIIRMLGNAKMISKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEK 208
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
L +M G +C PD TY+ LIS++CK G Q
Sbjct: 209 VHELYNEMSNEG-QCFPDTVTYSALISAFCKLGRQ 242
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK LG+ G +++A+ F M + C P+VYAYN +++ L R G ++A + +M+ G
Sbjct: 478 MIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHG 537
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD+ +Y I++++ K G
Sbjct: 538 --CIPDINSYNIILNALAKTG 556
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M ++F + +NV G +EM + V T T LI+ LG+ G ++EA F+ M++
Sbjct: 268 MALLF-KLDNVHGALGLFEEMRHQYCRPDVFTYTE--LIRGLGKAGRLDEAYNFFHEMRR 324
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
CRPD N +IN L + G + A L E+ME RC P V TY +I +
Sbjct: 325 EGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMET--LRCIPSVVTYNTIIKA 375
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D EM+R G V L+ L G+++EAL T RM+ C PD+ +YN+++N
Sbjct: 493 DLFDEMNRLGCTPNVYA--YNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILN 550
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
AL + G ++A +L M+ + PD +Y ++ + GM
Sbjct: 551 ALAKTGGPDRAMGMLCNMKQSAIK--PDAVSYNTVLGALSHAGM 592
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + ++F EM R G T + +I LG+ G +++A+ F M+ RC
Sbjct: 306 LGKAGRLDEAYNFFHEMRREGCRP--DTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCI 363
Query: 202 PDVYAYNVVINAL----CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P V YN +I AL RV + E+M+ G P +TY+ILI +CK
Sbjct: 364 PSVVTYNTIIKALFESKSRVSEISS---WFERMKGSGI--SPSPFTYSILIDGFCK 414
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 6/143 (4%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFAR-GNNVKGLWDFLKEMSRRGNGELVTTSTV 172
K E Y+ + F + VT + F + G +W L EM + NG T
Sbjct: 208 KVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIW-LLNEM--KDNGMQPTAKIY 264
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ +L + V+ AL F M+ CRPDV+ Y +I L + G ++A +M
Sbjct: 265 TMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRR 324
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C PD +I+ K G
Sbjct: 325 EG--CRPDTVLMNNMINFLGKAG 345
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ +G + ++ ++ L + G + A+ MKQ +PD +YN V+ AL G F
Sbjct: 534 QDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMF 593
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+A L+++M GF D+ TY+ ++ + K
Sbjct: 594 EEAAKLMKEMNAIGF--DYDLITYSSILEAIGK 624
>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
Length = 571
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
R K +G+N +F+ W + ++ H+ T + +W ++EM R
Sbjct: 94 REIMKTDIGVNVKMQFFRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNP 153
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+VT + ++ ++++LG +V++A+A FY++K +C+P AYN +I L G + K
Sbjct: 154 IC-VVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEK 212
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L +M G C PD TY+ LIS++CK G
Sbjct: 213 VHELYNEMSTEG-HCFPDTMTYSALISAFCKLG 244
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK LG+ G +++A+ F M + C PDVYAYN +++ L R G ++A + +M+ G
Sbjct: 482 MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHG 541
Query: 235 FRCPPDVYTYTILISSYCK 253
C PD+ +Y I+++ K
Sbjct: 542 --CIPDINSYNIILNGLQK 558
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+F + N+V G +EM + V T T LI+ LG+ G ++EA FY M++ C
Sbjct: 274 LFFKLNDVHGALSLFEEMRHQYCRPDVFTYTE--LIRGLGKAGRIDEAYHFFYEMQREGC 331
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
RPD N +IN L + G + A L ++M RC P V TY +I +
Sbjct: 332 RPDTIVMNNMINFLGKAGRLDDAMKLFQEM--GTLRCIPSVVTYNTIIKA 379
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
K E Y+ + H F + +T + F + L EM + NG TT
Sbjct: 211 EKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEM--KDNGMQPTTKIY 268
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ + + V+ AL+ F M+ CRPDV+ Y +I L + G ++A +M+
Sbjct: 269 TMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQR 328
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C PD +I+ K G
Sbjct: 329 EG--CRPDTIVMNNMINFLGKAG 349
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Query: 111 GINKATEFYHWVERFFHFFH--NEVTCKEMGIVFARGNNVKG----LWDFLKEMSRRGNG 164
G+ KA ++ +HFF+ C+ IV N G L D +K G
Sbjct: 309 GLGKAGR----IDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTL 364
Query: 165 ELV-TTSTVTCLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+ + T +IK L E + +E + F RMK+ P + Y+++I+ C+ K
Sbjct: 365 RCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEK 424
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A LLE+M+ GF PP Y LI + K
Sbjct: 425 AMMLLEEMDEKGF--PPCPAAYCSLIDALGK 453
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 26/156 (16%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIV------------FARGNNVKGLWDFLKEMSR 160
++A+E W ER KE GI F + N ++ L+EM
Sbjct: 385 SRASEVPSWFERM----------KESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDE 434
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+G + LI LG+ + A F +K+ Y V+I L + G
Sbjct: 435 KGFPP--CPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRL 492
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ A + ++M G C PDVY Y L+S + GM
Sbjct: 493 DDAINMFDEMNKLG--CAPDVYAYNALMSGLARTGM 526
>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
Length = 638
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
R K +G+N +F+ W + ++ H+ T + +W ++EM R
Sbjct: 94 REVMKTDIGVNVKMQFFRWAAKRRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNP 153
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+VT + ++ ++++LG +V++A+A FY++K +C+P AYN +I L G + K
Sbjct: 154 IC-VVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGK 212
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L +M G C PD TY+ LIS++CK G
Sbjct: 213 VHELYNEMSTEG-HCFPDTMTYSALISAFCKLG 244
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK LG+ G +++A+ F M + C PDVYAYN +++ L R G ++A + +M+ G
Sbjct: 482 MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHG 541
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD+ +Y I+++ K G
Sbjct: 542 --CIPDINSYNIILNGLAKTG 560
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L G+++EAL+T RM++ C PD+ +YN+++N L + G ++A +L M+
Sbjct: 517 LMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQST 576
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
R PDV +Y ++ + GM
Sbjct: 577 VR--PDVVSYNTVLGALSHAGM 596
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+F + ++V G +EM + V T T LI+ LG+ G ++EA FY M++ C
Sbjct: 274 LFFKLDDVHGALSLFEEMRHQYCRPDVFTYTE--LIRGLGKAGRIDEAYHFFYEMQREGC 331
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
RPD N +IN L + G + A L ++M RC P V TY +I +
Sbjct: 332 RPDTVVMNNMINFLGKAGRLDDAMKLFQEM--GTLRCIPSVVTYNTIIKA 379
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
K E Y+ + H F + +T + F + L EM + NG TT
Sbjct: 211 GKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEM--KENGMQPTTKIY 268
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI + + V+ AL+ F M+ CRPDV+ Y +I L + G ++A +M+
Sbjct: 269 TMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQR 328
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C PD +I+ K G
Sbjct: 329 EG--CRPDTVVMNNMINFLGKAG 349
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L + G + A+ MKQ RPDV +YN V+ AL G F +A L+E+M GF
Sbjct: 556 LAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEY- 614
Query: 239 PDVYTYTILISSYCK 253
D+ TY+ ++ + K
Sbjct: 615 -DLITYSSILEAIGK 628
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Query: 111 GINKATEFYHWVERFFHFFH--NEVTCKEMGIVFARGNNVKG----LWDFLKEMSRRGNG 164
G+ KA ++ +HFF+ C+ +V N G L D +K G
Sbjct: 309 GLGKAGR----IDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTL 364
Query: 165 ELV-TTSTVTCLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+ + T +IK L E + +E + F RMK+ P + Y+++I+ C+ K
Sbjct: 365 RCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEK 424
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A LLE+M+ GF PP Y LI + K
Sbjct: 425 AMMLLEEMDEKGF--PPCPAAYCSLIDALGK 453
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 28/157 (17%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIV------------FARGNNVKGLWDFLKEMSR 160
++A+E W ER KE GI F + N ++ L+EM
Sbjct: 385 SRASEVPSWFERM----------KESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDE 434
Query: 161 RGNGELVTTSTVTC-LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
+G C LI LG+ + A F +K+ Y V+I L + G
Sbjct: 435 KG---FPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGR 491
Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ A + ++M G C PDVY Y L+S + GM
Sbjct: 492 LDDAINMFDEMNKLG--CAPDVYAYNALMSGLARTGM 526
>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Brachypodium distachyon]
Length = 628
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 2/155 (1%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
R K +G+N +F+ W + ++ H+ T + +W ++EM R
Sbjct: 90 REVMKTDVGVNVKMQFFRWAAKKRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNP 149
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+VT ++ +I++LG ++++A+A FY++K +C+P AYN +I L G + K
Sbjct: 150 VC-VVTPMELSDIIRMLGNAKMISKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEK 208
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
L +M G C PD TY+ LIS++CK G Q
Sbjct: 209 VHELYNEMSNEG-HCFPDTVTYSALISAFCKLGRQ 242
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK LG+ G +++A+ F M + C P+VYAYN +++ L R G ++A + +M+ G
Sbjct: 478 MIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHG 537
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD+ +Y I+++ K G
Sbjct: 538 --CIPDINSYNIILNGLAKTG 556
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+F + NNV G +EM + V T T LI+ LG+ G +EA F+ M++ C
Sbjct: 270 LFFKLNNVHGALGLFEEMRHQYCRPDVFTYTE--LIRGLGKAGRFDEAYNFFHEMRREGC 327
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
RPD N +IN L + G + A L E+M +C P V TY +I +
Sbjct: 328 RPDTVVINNMINFLGKAGRLDDAVKLFEEM--GTLQCIPSVVTYNTIIKA 375
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L+ L G+++EAL T RM++ C PD+ +YN+++N L + G ++A +L M+
Sbjct: 512 ALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQS 571
Query: 234 GFRCPPDVYTYTILISSYCKYGM 256
+ PD +Y ++ + G+
Sbjct: 572 AIK--PDAVSYNTVLGAMSHAGL 592
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 4/142 (2%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
K E Y+ + H F + VT + F + L EM + NG T T
Sbjct: 208 KVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEM--KDNGMQPTAKIYT 265
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
LI + + V+ AL F M+ CRPDV+ Y +I L + G F++A +M
Sbjct: 266 MLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRRE 325
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G C PD +I+ K G
Sbjct: 326 G--CRPDTVVINNMINFLGKAG 345
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 111 GINKATEFYHWVERFFHFFHN--EVTCKEMGIVFARGNNVKG----LWDFLKEMSRRGNG 164
G+ KA F + ++FFH C+ +V N G L D +K G
Sbjct: 305 GLGKAGRF----DEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTL 360
Query: 165 ELV-TTSTVTCLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+ + + T +IK L E + ++E + F RMK P + Y+++I+ C+ K
Sbjct: 361 QCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEK 420
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A LLE+M+ GF PP Y LI + K
Sbjct: 421 AMMLLEEMDEKGF--PPCPAAYCSLIDALGK 449
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L + G + A+ MKQ +PD +YN V+ A+ G F +A L+++M + GF
Sbjct: 552 LAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEY- 610
Query: 239 PDVYTYTILISSYCK 253
D+ TY+ ++ + K
Sbjct: 611 -DLITYSSILEAIGK 624
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC-LIKVLGEEGLVNEALATFYRMKQFRC 200
F + N + L+EM +G C LI LG+ + A F +K+
Sbjct: 412 FCKTNRTEKAMMLLEEMDEKG---FPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCG 468
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
Y V+I L + G + A L ++M G C P+VY Y L+S + GM
Sbjct: 469 SSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLG--CTPNVYAYNALMSGLARAGM 522
>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
Length = 632
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
R K +G+N +F+ W + ++ H+ T + +W ++EM R
Sbjct: 94 REVMKTDVGVNVKMQFFRWAAKKRNYQHDTSTYMALIHCLELVEQYGEMWKMIQEMVRSP 153
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+VT ++ +I++LG ++ +A+ FY++K +C+P AYN +I L G + K
Sbjct: 154 IC-VVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEK 212
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
L +M G C PD TY+ LIS++CK G Q
Sbjct: 213 VHELYNEMSNEG-HCQPDTVTYSALISAFCKLGRQ 246
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK LG+ G +++A+ F M + C P+VYAYN +++ L R ++A + +M+ G
Sbjct: 482 MIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHG 541
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD+ +Y I+++ K G
Sbjct: 542 --CLPDINSYNIILNGLAKTG 560
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L +++EAL T +M++ C PD+ +YN+++N L + G ++A +L M+
Sbjct: 517 LMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNST 576
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
+ PD +Y ++S+ GM
Sbjct: 577 IK--PDAVSYNTVLSALSHAGM 596
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 65/151 (43%), Gaps = 14/151 (9%)
Query: 111 GINKATEFYHWVERFFHFFH--NEVTCKEMGIVFARGNNVKG----LWDFLKEMSRRGNG 164
G+ KA ++ +HF+H CK +V N G L D LK G
Sbjct: 309 GLGKAGR----IDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVS 364
Query: 165 ELV-TTSTVTCLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+ T +IK L E + V+E + F RMK P + Y+++I+ C+ K
Sbjct: 365 HCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEK 424
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A LLE+M+ GF PP Y LI + K
Sbjct: 425 AMMLLEEMDEKGF--PPCPAAYCSLIDALGK 453
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+F + +NV G +EM V T T LI+ LG+ G ++EA ++ M++ C
Sbjct: 274 LFFKLDNVHGALSLFEEMRYMYCRPDVFTYTE--LIRGLGKAGRIDEAYHFYHEMQREGC 331
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+PD N +IN L + G + L E+M + C P+V TY +I +
Sbjct: 332 KPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVS--HCIPNVVTYNTIIKA 379
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 4/142 (2%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
K E Y+ + H + VT + F + L EM + NG T T
Sbjct: 212 KVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEM--KENGMQPTAKIYT 269
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
+I + + V+ AL+ F M+ CRPDV+ Y +I L + G ++A +M+
Sbjct: 270 MIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQRE 329
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G C PD +I+ K G
Sbjct: 330 G--CKPDTVVMNNMINFLGKAG 349
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G L ++ ++ L + G + A+ MK +PD +YN V++AL G F +
Sbjct: 540 HGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEE 599
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A L+++M GF D+ TY+ ++ + K
Sbjct: 600 AAELMKEMNALGFEY--DLITYSSILEAIGK 628
>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 632
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
R K +G+N +F+ W + ++ H+ T + +W ++EM R
Sbjct: 94 REVMKTDVGVNVKMQFFRWAAKKRNYQHDTSTYMALIHCLELVEQYGEMWKMIQEMVRSP 153
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+VT ++ +I++LG ++ +A+ FY++K +C+P AYN +I L G + K
Sbjct: 154 IC-VVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEK 212
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
L +M G C PD TY+ LIS++CK G Q
Sbjct: 213 VHELYNEMSNEG-HCHPDTVTYSALISAFCKLGRQ 246
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK LG+ G +++A+ F M + C P+VYAYN +++ L R ++A + +M+ G
Sbjct: 482 MIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHG 541
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD+ +Y I+++ K G
Sbjct: 542 --CLPDINSYNIILNGLAKTG 560
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L +++EAL T +M++ C PD+ +YN+++N L + G ++A +L M+
Sbjct: 517 LMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNST 576
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
+ PD +Y ++S+ GM
Sbjct: 577 IK--PDAVSYNTVLSALSHAGM 596
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 65/151 (43%), Gaps = 14/151 (9%)
Query: 111 GINKATEFYHWVERFFHFFH--NEVTCKEMGIVFARGNNVKG----LWDFLKEMSRRGNG 164
G+ KA ++ +HF+H CK +V N G L D LK G
Sbjct: 309 GLGKAGR----IDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVS 364
Query: 165 ELV-TTSTVTCLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+ T +IK L E + V+E + F RMK P + Y+++I+ C+ K
Sbjct: 365 HCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEK 424
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A LLE+M+ GF PP Y LI + K
Sbjct: 425 AMMLLEEMDEKGF--PPCPAAYCSLIDALGK 453
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+F + +NV G +EM V T T LI+ LG+ G ++EA ++ M++ C
Sbjct: 274 LFFKLDNVHGALSLFEEMRYMYCRPDVFTYTE--LIRGLGKAGRIDEAYHFYHEMQREDC 331
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+PD N +IN L + G + L E+M + C P+V TY +I +
Sbjct: 332 KPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVS--HCIPNVVTYNTIIKA 379
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 4/142 (2%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
K E Y+ + H + VT + F + L EM + NG T T
Sbjct: 212 KVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEM--KENGMQPTAKIYT 269
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
+I + + V+ AL+ F M+ CRPDV+ Y +I L + G ++A +M+
Sbjct: 270 MIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQRE 329
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
C PD +I+ K G
Sbjct: 330 D--CKPDTVVMNNMINFLGKAG 349
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G L ++ ++ L + G + A+ MK +PD +YN V++AL G F +
Sbjct: 540 HGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEE 599
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A L+++M GF D+ TY+ ++ + K
Sbjct: 600 AAELMKEMNALGFEY--DLITYSSILEAIGK 628
>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 1627
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 2/153 (1%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
R K +G+N +F+ W + ++ H+ T + +W ++EM R
Sbjct: 1084 REVMKTDVGVNVKMQFFRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNP 1143
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+VT + ++ ++++LG +V +A+ FY++K +C+P AYN +I L G + K
Sbjct: 1144 IC-VVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEK 1202
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L +M G C PD TY+ LIS++CK G
Sbjct: 1203 VHQLYNEMSTEGH-CFPDTVTYSALISAFCKLG 1234
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK LG+ G +++A+ F M + C PDVYAYN +++ L R G ++A + +M+ G
Sbjct: 1472 MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHG 1531
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD+ +Y I+++ K G
Sbjct: 1532 --CIPDINSYNIILNGLAKTG 1550
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L+ L G+++EAL+T RM++ C PD+ +YN+++N L + G ++A +L M+
Sbjct: 1506 ALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQS 1565
Query: 234 GFRCPPDVYTYTILISSYCKYGM 256
R PDV +Y ++ + GM
Sbjct: 1566 TVR--PDVVSYNTVLGALSHAGM 1586
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ LG+ G ++EA F M++ CRPD N +IN L + G + A L ++M
Sbjct: 1292 TYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEM 1351
Query: 231 ELPGFRCPPDVYTYTILISS 250
E RC P V TY +I +
Sbjct: 1352 ET--LRCIPSVVTYNTIIKA 1369
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + + F EM R G T + +I LG+ G +++A+ F M+ RC
Sbjct: 1300 LGKAGRIDEAYHFFCEMQREGCRP--DTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCI 1357
Query: 202 PDVYAYNVVINALCRV-GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P V YN +I AL ++ E+M+ G P +TY+ILI +CK
Sbjct: 1358 PSVVTYNTIIKALFESKSRASEVPSWFERMKESGIS--PSSFTYSILIDGFCK 1408
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ L + G + A+ MKQ RPDV +YN V+ AL G F +A L+++M G
Sbjct: 1542 ILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLG 1601
Query: 235 FRCPPDVYTYTILISSYCK 253
F D+ TY+ ++ + K
Sbjct: 1602 FEY--DLITYSSILEAIGK 1618
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 171 TVTCLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T +IK L E + +E + F RMK+ P + Y+++I+ C+ KA LLE+
Sbjct: 1362 TYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEE 1421
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
M+ GF PP Y LI + K
Sbjct: 1422 MDEKGF--PPCPAAYCSLIDALGK 1443
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 4/143 (2%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
K + Y+ + H F + VT + F + L EM G TT
Sbjct: 1201 EKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQP--TTKIY 1258
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI + + + AL+ F M+ CRPDV+ Y +I L + G ++A +M+
Sbjct: 1259 TMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQR 1318
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C PD +I+ K G
Sbjct: 1319 EG--CRPDTVFMNNMINFLGKAG 1339
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 28/157 (17%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIV------------FARGNNVKGLWDFLKEMSR 160
++A+E W ER KE GI F + N ++ L+EM
Sbjct: 1375 SRASEVPSWFERM----------KESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDE 1424
Query: 161 RGNGELVTTSTVTC-LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
+G C LI LG+ + A F +K+ Y V+I L + G
Sbjct: 1425 KG---FPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGR 1481
Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ A + ++M G C PDVY Y L+S + GM
Sbjct: 1482 LDDAINMFDEMNKLG--CAPDVYAYNALMSGLARTGM 1516
>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 604
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 2/153 (1%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
R K +G+N +F+ W + ++ H+ T + +W ++EM R
Sbjct: 61 REVMKTDVGVNVKMQFFRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNP 120
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+VT + ++ ++++LG +V +A+ FY++K +C+P AYN +I L G + K
Sbjct: 121 IC-VVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEK 179
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L +M G C PD TY+ LIS++CK G
Sbjct: 180 VHQLYNEMSTEG-HCFPDTVTYSALISAFCKLG 211
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK LG+ G +++A+ F M + C PDVYAYN +++ L R G ++A + +M+ G
Sbjct: 449 MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHG 508
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD+ +Y I+++ K G
Sbjct: 509 --CIPDINSYNIILNGLAKTG 527
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L G+++EAL+T RM++ C PD+ +YN+++N L + G ++A +L M+
Sbjct: 484 LMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQST 543
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
R PDV +Y ++ + GM
Sbjct: 544 VR--PDVVSYNTVLGALSHAGM 563
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+F + N+ G +EM + V T T LI+ LG+ G ++EA F M++ C
Sbjct: 241 LFFKFNDAHGALSLFEEMRHQYCRPDVFTYTE--LIRGLGKAGRIDEAYHFFCEMQREGC 298
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
RPD N +IN L + G + A L ++ME RC P V TY +I +
Sbjct: 299 RPDTVFMNNMINFLGKAGRLDDAMKLFQEMET--LRCIPSVVTYNTIIKA 346
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + + F EM R G T + +I LG+ G +++A+ F M+ RC
Sbjct: 277 LGKAGRIDEAYHFFCEMQREGCRP--DTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCI 334
Query: 202 PDVYAYNVVINALCRV-GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P V YN +I AL ++ E+M+ G P +TY+ILI +CK
Sbjct: 335 PSVVTYNTIIKALFESKSRASEVPSWFERMKESGI--SPSSFTYSILIDGFCK 385
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L + G + A+ MKQ RPDV +YN V+ AL G F +A L+++M GF
Sbjct: 523 LAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEY- 581
Query: 239 PDVYTYTILISSYCK 253
D+ TY+ ++ + K
Sbjct: 582 -DLITYSSILEAIGK 595
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 4/143 (2%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
K + Y+ + H F + VT + F + L EM G TT
Sbjct: 178 EKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQP--TTKIY 235
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI + + + AL+ F M+ CRPDV+ Y +I L + G ++A +M+
Sbjct: 236 TMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQR 295
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C PD +I+ K G
Sbjct: 296 EG--CRPDTVFMNNMINFLGKAG 316
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 171 TVTCLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T +IK L E + +E + F RMK+ P + Y+++I+ C+ KA LLE+
Sbjct: 339 TYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEE 398
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
M+ GF PP Y LI + K
Sbjct: 399 MDEKGF--PPCPAAYCSLIDALGK 420
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 28/157 (17%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIV------------FARGNNVKGLWDFLKEMSR 160
++A+E W ER KE GI F + N ++ L+EM
Sbjct: 352 SRASEVPSWFERM----------KESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDE 401
Query: 161 RGNGELVTTSTVTC-LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
+G C LI LG+ + A F +K+ Y V+I L + G
Sbjct: 402 KG---FPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGR 458
Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ A + ++M G C PDVY Y L+S + GM
Sbjct: 459 LDDAINMFDEMNKLG--CAPDVYAYNALMSGLARTGM 493
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM R NG + T CLI LG+ G ++EA F M++ C PD + YN +I
Sbjct: 101 LLAEM--RDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYG 158
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L +VG KA LLE+ME G CPPDV TY+ LI+ K G
Sbjct: 159 LGKVGRSQKAMELLEEMERHG--CPPDVMTYSSLITGLGKDG 198
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G VK + +EM RRG + T T L+ LG+ G V++AL MK+ +P V
Sbjct: 198 GETVKA-FKLFQEMKRRGRKP--DSITFTALMDALGKAGRVDDALELLDEMKERGVKPGV 254
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN +I +VG+ +A LL++M+ G C PDV TY+ LI+ K
Sbjct: 255 VTYNALIAGFGKVGDLVEAYNLLDEMKRNG--CKPDVVTYSCLITGLIK 301
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + ++ ++ L EM R NG T +CLI L + ++EA +M++ C
Sbjct: 264 FGKVGDLVEAYNLLDEMKR--NGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCP 321
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD YN +IN L + G N A L ++M+ G C PDV TY+ LI++ K
Sbjct: 322 PDTITYNTLINGLGKAGLLNDAGRLFDRMKSKG--CNPDVVTYSTLITALGK 371
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ +CLI LG G AL M+ C+P+++ YN +++ L + G F++A LL +M
Sbjct: 46 SYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEM 105
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C PDV TY LIS+ K G
Sbjct: 106 RDNG--CVPDVRTYNCLISTLGKAG 128
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
LK+M + G T T LI LG+ GL+N+A F RMK C PDV Y+ +I AL
Sbjct: 312 LKKMEKEGCPP--DTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITAL 369
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ A L E+ME G + PD++TY +I+ K G
Sbjct: 370 GKAARVESACVLFEEMESVGIQ--PDLFTYCSIITVLGKAG 408
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQF 198
+ V + L EM RG V VT LI G+ G + EA MK+
Sbjct: 228 ALGKAGRVDDALELLDEMKERG----VKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRN 283
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
C+PDV Y+ +I L + ++A +L++ME G CPPD TY LI+ K G+
Sbjct: 284 GCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEG--CPPDTITYNTLINGLGKAGL 339
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I VLG+ G V++A F M+ PDV YN +N+L R G F +AR + E M
Sbjct: 396 TYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDM 455
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ G PDV TY L+ K
Sbjct: 456 KESGLL--PDVATYDALLLGLSK 476
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ LG+ G +EAL M+ C PDV YN +I+ L + G ++A L +M
Sbjct: 81 TYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEM 140
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C PD +TY LI K G
Sbjct: 141 RERG--CVPDTFTYNSLIYGLGKVG 163
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L+EM R G V T + LI LG++G +A F MK+ +PD + +++
Sbjct: 170 ELLEEMERHGCPPDVMT--YSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMD 227
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
AL + G + A LL++M+ G + P V TY LI+ + K G
Sbjct: 228 ALGKAGRVDDALELLDEMKERGVK--PGVVTYNALIAGFGKVG 268
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + G EA F +K + PDV +Y+ +IN+L R G + A ++ +M
Sbjct: 11 TYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEM 70
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G C P+++TY L+ K G
Sbjct: 71 QAKG--CKPNLWTYNTLVDCLGKAG 93
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
N KGLW S+ LI L + G V+EA T +K+ +PD+ +
Sbjct: 526 NSKGLWP--------------GASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVS 571
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
Y+ +I+AL + G + A LLE+M G + P Y+
Sbjct: 572 YSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYS 608
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N+ L+D +K S+ N ++VT ST LI LG+ V A F M+ +PD++
Sbjct: 341 NDAGRLFDRMK--SKGCNPDVVTYST---LITALGKAARVESACVLFEEMESVGIQPDLF 395
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +I L + G + A L +M G PDV TY ++S + G
Sbjct: 396 TYCSIITVLGKAGQVDDADRLFSEMRGKGL--SPDVITYNAFLNSLGRGG 443
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EM RG + T T LI LG+ G +A+ M++ C PDV Y+ +I L +
Sbjct: 139 EMRERGC--VPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGK 196
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
G KA L ++M+ G + PD T+T L+ + K G
Sbjct: 197 DGETVKAFKLFQEMKRRGRK--PDSITFTALMDALGKAG 233
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
MK F P+V YN ++NAL + G +A+ L E EL + PDV +Y+ LI+S +
Sbjct: 1 MKGFP-SPNVVTYNSLLNALAKAGQCEEAQLLFE--ELKAAKWTPDVVSYSCLINSLGRA 57
Query: 255 G 255
G
Sbjct: 58 G 58
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V + N++ +++M RG + T T LI ++G +++AL MKQ R
Sbjct: 339 VMCKAGNLERAVTLVRQMRERG--LQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRI 396
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+P V YN +IN C VG ++AR LL +ME G + PDV TY+ +IS+YCK
Sbjct: 397 KPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLK--PDVVTYSTIISAYCK 447
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+ G +EAL+ F M Q PDV + +I+ +C+ GN +A L+ QM G + +
Sbjct: 307 KAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQM--N 364
Query: 241 VYTYTILISSYCKYG 255
T+T LI +CK G
Sbjct: 365 EVTFTALIDGFCKKG 379
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T + LI+VL E +++A F M + +PD + Y +I+ C+ GN A
Sbjct: 465 GVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESA 524
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
L ++M G PDV TY++LI+ K
Sbjct: 525 LSLHDKMVKAGVL--PDVVTYSVLINGLSK 552
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L++ L G EAL+ M+ C P+V YN ++ A R G + A L+ M
Sbjct: 192 TYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMM 251
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + P++ T+ +++ CK G
Sbjct: 252 REGGLK--PNLVTFNSMVNGMCKAG 274
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + F R V G + L M R G G T ++ + + G + +A
Sbjct: 224 NVVTYNTLVAAFFRAGEVDG-AERLVGMMREG-GLKPNLVTFNSMVNGMCKAGKMEDARK 281
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F M + PD +YN ++ C+ G ++A + +M G PDV T+T LI
Sbjct: 282 VFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIM--PDVVTFTSLIHV 339
Query: 251 YCKYG 255
CK G
Sbjct: 340 MCKAG 344
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ L EM +G ++VT ST+ I + + A +M + PD Y+ +I
Sbjct: 421 ELLHEMEAKGLKPDVVTYSTI---ISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLI 477
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC + A L + M G + PD +TYT LI +CK G
Sbjct: 478 RVLCGEKRLSDAHVLFKNMIKLGLQ--PDEFTYTSLIDGHCKEG 519
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++EA + M+ +PDV Y+ +I+A C+ + + A L +QM G PD
Sbjct: 414 GRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVL--PDAI 471
Query: 243 TYTILISSYC 252
TY+ LI C
Sbjct: 472 TYSSLIRVLC 481
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V + N++ +++M RG + T T LI ++G +++AL M+Q R
Sbjct: 299 VMCKAGNLEWAVTLVRQMRERG--LQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRI 356
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+P V YN +IN C VG ++AR LL +ME G + PDV TY+ +IS+YCK
Sbjct: 357 KPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLK--PDVVTYSTIISAYCK 407
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T + LI+VL EE +++A F M + +PD + Y +I+ C+ GN +A
Sbjct: 425 GVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERA 484
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
L ++M G PDV TY++LI+ K
Sbjct: 485 LSLHDKMVKAGVL--PDVVTYSVLINGLSK 512
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+ G +EAL+ F M Q PDV + +I+ +C+ GN A L+ QM G + +
Sbjct: 267 KAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQM--N 324
Query: 241 VYTYTILISSYCKYG 255
T+T LI +CK G
Sbjct: 325 EVTFTALIDGFCKKG 339
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI+ L G EAL+ M+ C P+V YN ++ A R G + A L+ M
Sbjct: 152 TYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMM 211
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + P++ T+ +++ CK G
Sbjct: 212 LDGGLK--PNLVTFNSMVNGMCKAG 234
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT + F R V G + M G LVT ++ ++ + + G + +A
Sbjct: 184 NVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNS---MVNGMCKAGKMEDAR 240
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
F M + PD +YN ++ C+ G ++A + +M G PDV T+T LI
Sbjct: 241 KVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIM--PDVVTFTSLIH 298
Query: 250 SYCKYG 255
CK G
Sbjct: 299 VMCKAG 304
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ L EM +G ++VT ST+ I + + A +M + PD Y+ +I
Sbjct: 381 ELLHEMEAKGLKPDVVTYSTI---ISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLI 437
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC + A L + M G + PD +TYT LI +CK G
Sbjct: 438 RVLCEEKRLSDAHVLFKNMIKLGLQ--PDEFTYTSLIDGHCKEG 479
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++EA + M+ +PDV Y+ +I+A C+ + + A L +QM G PD
Sbjct: 374 GRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVL--PDAI 431
Query: 243 TYTILISSYCK 253
TY+ LI C+
Sbjct: 432 TYSSLIRVLCE 442
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V + N++ ++EM RG + T T LI ++G +++AL M+Q R
Sbjct: 306 VMCKAGNLERAVGLVREMRERG--LQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRI 363
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P V YN +IN C VG ++AR L+ +ME G + PDV TY+ ++S+YCK G
Sbjct: 364 QPSVVCYNALINGYCMVGRMDEARELVREMEAKGVK--PDVVTYSTILSAYCKNG 416
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG L T + LI+VL EE + +A F M +PD Y +I+ C+ GN +
Sbjct: 431 NGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVER 490
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A L ++M G PDV TY++LI+ K
Sbjct: 491 ALSLHDEMVKAGVL--PDVVTYSVLINGLSK 519
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L++ L G EAL+ M+ C P+ YN ++ A CR G ++A L++ M
Sbjct: 159 TYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMM 218
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + P++ T+ +++ CK G
Sbjct: 219 REGGLK--PNLVTFNSVVNGICKAG 241
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
RG+ + L L++M RG G T L+ G V+ A M++ +P
Sbjct: 169 GRGHRKEAL-SVLRDM--RGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKP 225
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ +N V+N +C+ G AR + ++M G PD +Y L+ YCK G
Sbjct: 226 NLVTFNSVVNGICKAGRMEDARKVFDEMVKEGL--APDGVSYNTLVGGYCKVG 276
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 131 NEVTCKEMGIVFARGNNV---KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187
N VT + F R V + L D ++E + N LVT ++V + + + G + +
Sbjct: 191 NAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPN--LVTFNSV---VNGICKAGRMED 245
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A F M + PD +YN ++ C+VG ++A + +M G PDV T+T L
Sbjct: 246 ARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIM--PDVVTFTSL 303
Query: 248 ISSYCKYG 255
I CK G
Sbjct: 304 IHVMCKAG 311
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +EAL+ F M + PDV + +I+ +C+ GN +A L+ +M G + +
Sbjct: 276 GCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQ--MNEI 333
Query: 243 TYTILISSYCKYG 255
T+T LI +CK G
Sbjct: 334 TFTALIDGFCKKG 346
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ ++EM +G ++VT ST+ + + G + A +M + PD Y+ +I
Sbjct: 388 ELVREMEAKGVKPDVVTYSTI---LSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLI 444
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC A L + M G + PD TYT LI +CK G
Sbjct: 445 RVLCEEKRLGDAHVLFKNMISLGLQ--PDEVTYTSLIDGHCKEG 486
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++EA M+ +PDV Y+ +++A C+ G+ + A L +QM G PD
Sbjct: 381 GRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVL--PDAI 438
Query: 243 TYTILISSYCK 253
TY+ LI C+
Sbjct: 439 TYSSLIRVLCE 449
>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Glycine max]
Length = 654
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 104/249 (41%), Gaps = 33/249 (13%)
Query: 9 SNHTCLVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRS--I 66
NH CL Q + L+ + + + T + F V V + + ++ + P+
Sbjct: 58 DNHGCLTNQFGLIRLQEISINH----TDDHTHDEFA-SDVEKVYRILRKYHSRVPKLELA 112
Query: 67 GRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFF 126
R++G R L +R+L + D G AYR FY W +
Sbjct: 113 LRESGVVVRPGLTERVLSRCGDA--------GNLAYR--------------FYSWASKQS 150
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186
+ K M V +R +W ++EM R+ N L+T L++ +V+
Sbjct: 151 GHRLDHDAYKAMIKVLSRMRQFGAVWALIEEM-RQENPHLITPQVFVILMRRFASARMVH 209
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+A+ M ++ C PD Y + +++ALC+ G+ +A L E M +R P V +T
Sbjct: 210 KAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMR---YRWKPSVKHFTS 266
Query: 247 LISSYCKYG 255
L+ +CK G
Sbjct: 267 LLYGWCKEG 275
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ + G + +A M++ RC P+ +Y V+I +LC+ +A L +M+ G
Sbjct: 302 LLGGYAQAGKMGDAYDLLKEMRRKRCEPNATSYTVLIQSLCKHERLEEATRLFVEMQTNG 361
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C DV TY+ LIS +CK+G
Sbjct: 362 --CQADVVTYSTLISGFCKWG 380
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ +EG + EA +MK PD+ YN ++ + G A LL++M
Sbjct: 265 TSLLYGWCKEGKLMEAKHVLVQMKDMGIEPDIVVYNNLLGGYAQAGKMGDAYDLLKEMRR 324
Query: 233 PGFRCPPDVYTYTILISSYCKY 254
RC P+ +YT+LI S CK+
Sbjct: 325 K--RCEPNATSYTVLIQSLCKH 344
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M++ C PD+ YN VI C++G + L +ME G P + T+ I+I+ + +
Sbjct: 427 MQKIGCAPDLSIYNTVIRLACKLGEVKEGIQLWNEMESSGL--SPGMDTFVIMINGFLEQ 484
Query: 255 G 255
G
Sbjct: 485 G 485
>gi|413944185|gb|AFW76834.1| hypothetical protein ZEAMMB73_287624 [Zea mays]
Length = 445
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 2/153 (1%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
R K +G+N +F+ W + ++ H+ T + +W ++EM R
Sbjct: 95 REVMKTDVGVNVKMQFFRWATKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRDP 154
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+VT + ++ +++ LG +V++A+A Y +K +C+P AYN +I L G + K
Sbjct: 155 IC-VVTPTELSDVVRKLGNAKMVSKAIAISYHIKTRKCQPTAQAYNSMIIMLMHEGQYEK 213
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L +M G C PD TY+ LI ++CK G
Sbjct: 214 VHQLYNEMSTEG-HCFPDTMTYSALIFAFCKLG 245
>gi|413944184|gb|AFW76833.1| hypothetical protein ZEAMMB73_287624 [Zea mays]
Length = 467
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 2/153 (1%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
R K +G+N +F+ W + ++ H+ T + +W ++EM R
Sbjct: 95 REVMKTDVGVNVKMQFFRWATKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRDP 154
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+VT + ++ +++ LG +V++A+A Y +K +C+P AYN +I L G + K
Sbjct: 155 IC-VVTPTELSDVVRKLGNAKMVSKAIAISYHIKTRKCQPTAQAYNSMIIMLMHEGQYEK 213
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L +M G C PD TY+ LI ++CK G
Sbjct: 214 VHQLYNEMSTEG-HCFPDTMTYSALIFAFCKLG 245
>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 12/121 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE R + + L+D +++ R NG T T LI ++ A+ T+++
Sbjct: 304 CKE-----GRLDVAEQLFDEMQQRGLRPNG-----ITFTALIDGQCRSRRIDSAMNTYHQ 353
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M +PD+ YN ++N LC+VG+ NKAR L+++M + G + PD TYT LI YCK
Sbjct: 354 MLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMK--PDKITYTTLIDGYCKE 411
Query: 255 G 255
G
Sbjct: 412 G 412
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+W F E+ G V + LI +EG + +A F +++ RP ++N +
Sbjct: 207 IWTFYSEILEYGFPPKVQYYNI--LINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTL 264
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
IN LC+ N ++ L + ME R PDV+TY++LI CK G
Sbjct: 265 INGLCKSRNLDEGFRLKKTMEEN--RIYPDVFTYSVLIHGLCKEG 307
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G ++ T LI +G V +A T M + +PD Y +VI+ C+ GN
Sbjct: 428 GVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMG 487
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL++M++ G + P V TY +L++ CK G
Sbjct: 488 FKLLKEMQINGHK--PGVITYNVLMNGLCKQG 517
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R V+ L+EM G +T T +I ++G V M+ +
Sbjct: 443 FCRDGRVRDAERTLREMVEAGMKP--DDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHK 500
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P V YNV++N LC+ G A LLE M G PD TY IL+ +CK G
Sbjct: 501 PGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGV--TPDDITYNILLEGHCKNG 552
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G TT + LI L + ++E M++ R PDV+ Y+V+I+ LC+ G
Sbjct: 250 RKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRL 309
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ A L ++M+ G R P+ T+T LI C+
Sbjct: 310 DVAEQLFDEMQQRGLR--PNGITFTALIDGQCR 340
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI +EG + A+ M + D A+ +I+ CR G A L +M
Sbjct: 400 TYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREM 459
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + PD TYT++I YCK G
Sbjct: 460 VEAGMK--PDDATYTMVIDGYCKKG 482
>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
R K+ + IN +F+ W + +F H+ T + +W ++EM R
Sbjct: 66 REVLKIDVEINVKIQFFKWAGKRRNFEHDLTTYMPLIRCLDDCGLFGEMWKMIQEMVRSP 125
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
++ + ++ ++K+LG+ +VN+AL+ FY++K +C+P YN +I L + G+ K
Sbjct: 126 TC-VIGPADLSEVVKILGKAKMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEK 184
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L +M G C PD TY++L+S++ K G
Sbjct: 185 IHELYHEMCNEG-DCFPDTMTYSVLVSAFVKLG 216
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK LG+ G +EA+ F MK+ C PDVYAYN +++ L R G +A L ME G
Sbjct: 453 MIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENG 512
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD+ ++ I+++ + G
Sbjct: 513 --CTPDLNSHNIILNGLARTG 531
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+ I F G+ K L ++EM +G T T T LIK LG+ G V +A + F M +
Sbjct: 244 LAIYFKSGDE-KALG-LVQEMKDKGCAP--TVFTYTELIKGLGKSGRVEDAYSVFLNMLK 299
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
C+PDV N +IN + G A L +QM +C P+V TY +I +
Sbjct: 300 DGCKPDVVLINNLINIFGKAGRLEDALKLFDQMR--SLKCAPNVVTYNTVIKA 350
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV-GNFNKARFLLEQMELP 233
LI + G+ G + +AL F +M+ +C P+V YN VI AL ++A E+M+
Sbjct: 312 LINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKAN 371
Query: 234 GFRCPPDVYTYTILISSYCK 253
G P +TY+ILI +CK
Sbjct: 372 GV--TPSSFTYSILIDGFCK 389
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D EM + G V L+ L G++ EA + M++ C PD+ ++N+++N
Sbjct: 468 DLFNEMKKIGCNPDVYA--YNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILN 525
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L R G +A + M++ PD +Y ++ S + GM
Sbjct: 526 GLARTGRPEQATEMF--MKMKDSLIKPDAVSYNTILGSLSRSGM 567
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 141 VFARGNNVKGLWDFLKEM-SRRGNGELVTTSTVTCLIKVLGE-EGLVNEALATFYRMKQF 198
+F + ++ +M S + +VT +TV IK L E + +EA + F +MK
Sbjct: 315 IFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTV---IKALFESKAPASEAASWFEKMKAN 371
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P + Y+++I+ C+ KA LLE+M+ GF PP Y LI++ K
Sbjct: 372 GVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGF--PPCPAAYCSLINALGK 424
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L G +A F +MK +PD +YN ++ +L R G F +A L+ +M GF
Sbjct: 527 LARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREMGSRGFEY- 585
Query: 239 PDVYTYTILISSYCK 253
D TY+ ++ + K
Sbjct: 586 -DHITYSSILEAVGK 599
>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 12/121 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE R + + L+D +++ R NG T T LI ++ A+ T+++
Sbjct: 304 CKE-----GRLDVAEQLFDEMQQRGLRPNG-----ITFTALIDGQYRSRRMDSAMNTYHQ 353
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M +PD+ YN ++N LC+VG+ NKAR L+++M++ G + PD TYT LI YCK
Sbjct: 354 MLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMK--PDKITYTTLIDGYCKE 411
Query: 255 G 255
G
Sbjct: 412 G 412
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+W F E+ G V + LI +EG + +A F +++ RP ++N +
Sbjct: 207 IWTFYSEILEYGFPPKVQYYNI--LINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTL 264
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
IN LC+ N ++ L + ME R PDV+TY++LI CK G
Sbjct: 265 INGLCKSRNLDEGFRLKKTMEEN--RIYPDVFTYSVLIHGLCKEG 307
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G ++ T LI +G V +A T M + +PD Y +VI+ C+ GN
Sbjct: 428 GVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMG 487
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL++M++ G + P V TY +L++ CK G
Sbjct: 488 FKLLKEMQINGHK--PGVITYNVLMNGLCKQG 517
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R V+ L+EM G +T T +I ++G V M+ +
Sbjct: 443 FCRDGRVRDAERTLREMVEAGMKP--DDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHK 500
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P V YNV++N LC+ G A LLE M G PD TY IL+ +CK G
Sbjct: 501 PGVITYNVLMNGLCKQGQMKNANMLLEAMLNLG--VTPDDITYNILLEGHCKNG 552
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G TT + LI L + ++E M++ R PDV+ Y+V+I+ LC+ G
Sbjct: 250 RKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRL 309
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
+ A L ++M+ G R P+ T+T LI
Sbjct: 310 DVAEQLFDEMQQRGLR--PNGITFTALIDG 337
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI +EG + A+ M + D A+ +I+ CR G A L +M
Sbjct: 400 TYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREM 459
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + PD TYT++I YCK G
Sbjct: 460 VEAGMK--PDDATYTMVIDGYCKKG 482
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L + G VN+A MK +PD Y +I+ C+ G+ A + + M G
Sbjct: 369 LLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEG 428
Query: 235 FRCPPDVYTYTILISSYCKYG 255
D +T LIS +C+ G
Sbjct: 429 VVL--DNVAFTALISGFCRDG 447
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R N++ + +M RG + T T LI G +++AL M++ R
Sbjct: 304 AMCRAGNLERAVALVGQMRERG--LRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRI 361
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P V YNV+IN C++G ++AR L+ +ME G + PDV TY+ ++S YCK G
Sbjct: 362 QPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMK--PDVVTYSTILSGYCKIG 414
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRC 200
R + + ++D EM+R G +T V+ L+ + G ++EALA F M Q
Sbjct: 239 GRMEDARKMFD---EMAREG----LTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGV 291
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV + +I+A+CR GN +A L+ QM G R + +T+T LI +C+ G
Sbjct: 292 VPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLR--MNEFTFTALIDGFCRNG 344
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
ARG + L +M RG G T L+ G V+ A M++ RP
Sbjct: 166 ARGQREEALGVVGDDM--RGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRP 223
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +N V+N LC+ G AR + ++M G PD +Y L+S YCK G
Sbjct: 224 SLVTFNTVVNGLCKAGRMEDARKMFDEMAREGL--TPDGVSYNTLVSGYCKAG 274
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI+ L EE + +A F +M Q +PD + Y +I+ C+ GN KA L ++M
Sbjct: 437 TYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEM 496
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G PDV TY++LI K
Sbjct: 497 IKKGVL--PDVVTYSVLIDGLSK 517
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT + F R V + M G LVT +TV + L + G + +A
Sbjct: 189 NVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTV---VNGLCKAGRMEDAR 245
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
F M + PD +YN +++ C+ G ++A + +M G PDV T+T LI
Sbjct: 246 KMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGV--VPDVVTFTSLIH 303
Query: 250 SYCKYG 255
+ C+ G
Sbjct: 304 AMCRAG 309
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+VY YN+++ ALC G +A ++ ++ G C P+V TY L++++C+ G
Sbjct: 152 PNVYTYNILVRALCARGQREEALGVVGD-DMRGAGCAPNVVTYNTLVAAFCRAG 204
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + EM +G ++VT ST+ +G+ + A +M + PD Y+ +I
Sbjct: 386 ELIHEMEAKGMKPDVVTYSTILSGYCKIGD---TDSAFELNRKMLKKGVVPDAITYSSLI 442
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC A L E+M G + PD +TYT LI +CK G
Sbjct: 443 RGLCEERRLGDACELFEKMLQLGLQ--PDEFTYTTLIDGHCKEG 484
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++EA + M+ +PDV Y+ +++ C++G+ + A L +M G PD
Sbjct: 379 GRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGV--VPDAI 436
Query: 243 TYTILISSYCK 253
TY+ LI C+
Sbjct: 437 TYSSLIRGLCE 447
>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Vitis vinifera]
Length = 725
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
R K+ + I+ +F+ W + +F H+ T + + +W ++EM R
Sbjct: 95 REVLKIDVEIHVKIQFFKWAGKRRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRST 154
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
++ + ++ ++KVLG+ +VN+AL+ FY++K +C+P YN +I L + G+ K
Sbjct: 155 C--VIGPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEK 212
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L +M G C PD TY+ LI+++ K G
Sbjct: 213 VHELYNEMCNEG-DCLPDTVTYSALIAAFGKLG 244
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK LG+ G ++EA+ F MK+ C PDVYAYN +++ + RVG ++A LL ME G
Sbjct: 482 MIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENG 541
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD+ ++ I+++ + + G
Sbjct: 542 --CTPDLNSHNIILNGFARTG 560
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+GI F G K L ++EM +G +T T T LIK +G+ G V EA + F M +
Sbjct: 272 LGIYFKLGRVEKAL-GLVQEMKEKGCA--LTVYTYTELIKGVGKAGKVEEAYSIFMNMLK 328
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
C+PDV N +IN L + G A L E+ME +C P+V TY +I +
Sbjct: 329 EGCKPDVVLINNLINLLGKAGRLADAIKLFEEME--SLQCTPNVVTYNTVIKA 379
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL-LEQMELP 233
LI +LG+ G + +A+ F M+ +C P+V YN VI AL FL E+M+
Sbjct: 341 LINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKEN 400
Query: 234 GFRCPPDVYTYTILISSYCK 253
G P +TY+ILI +CK
Sbjct: 401 GV--VPSSFTYSILIDGFCK 418
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ F RMK + +PDV +YN V+ L R G F +A L+++M GF D+ TY+ +
Sbjct: 565 AIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEY--DLITYSSI 622
Query: 248 ISSYCK 253
+ + K
Sbjct: 623 LEAVGK 628
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 62/156 (39%), Gaps = 28/156 (17%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIV------------FARGNNVKGLWDFLKEMSRR 161
+A+E + W E+ KE G+V F + N V+ L+EM +
Sbjct: 386 RASEAFLWYEKM----------KENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEK 435
Query: 162 GNGELVTTSTVTC-LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
G C LI LG+ A F +++ Y V+I L + G
Sbjct: 436 G---FAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRL 492
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
++A L +M+ G C PDVY Y L+S + GM
Sbjct: 493 SEAVDLFNEMKKLG--CNPDVYAYNALMSGMVRVGM 526
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 166 LVTTSTVTCLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
+VT +TV IK L E + +EA + +MK+ P + Y+++I+ C+ KA
Sbjct: 370 VVTYNTV---IKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKAL 426
Query: 225 FLLEQMELPGFRCPPDVYTYTI 246
LLE+M+ GF P Y I
Sbjct: 427 LLLEEMDEKGFAPCPAAYCSLI 448
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ L+D +KE NG T T ++ + + G V +AL MK+ C
Sbjct: 243 LGRDDSAISLFDEMKE-----NGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCA 297
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
VY Y +I + + G +A + M G C PDV LI+ K G
Sbjct: 298 LTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEG--CKPDVVLINNLINLLGKAG 349
>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
R K+ + I+ +F+ W + +F H+ T + + +W ++EM R
Sbjct: 95 REVLKIDVEIHVKIQFFKWAGKRRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRST 154
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
++ + ++ ++KVLG+ +VN+AL+ FY++K +C+P YN +I L + G+ K
Sbjct: 155 C--VIGPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEK 212
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L +M G C PD TY+ LI+++ K G
Sbjct: 213 VHELYNEMCNEG-DCLPDTVTYSALIAAFGKLG 244
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK LG+ G ++EA+ F MK+ C PDVYAYN +++ + RVG ++A LL ME G
Sbjct: 482 MIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENG 541
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD+ ++ I+++ + + G
Sbjct: 542 --CTPDLNSHNIILNGFARTG 560
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+GI F G K L ++EM +G +T T T LIK +G+ G V EA + F M +
Sbjct: 272 LGIYFKLGRVEKAL-GLVQEMKEKGCA--LTVYTYTELIKGVGKAGKVEEAYSIFMNMLK 328
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
C+PDV N +IN L + G A L E+ME +C P+V TY +I +
Sbjct: 329 EGCKPDVVLINNLINLLGKAGRLADAIKLFEEME--SLQCTPNVVTYNTVIKA 379
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL-LEQMELP 233
LI +LG+ G + +A+ F M+ +C P+V YN VI AL FL E+M+
Sbjct: 341 LINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKEN 400
Query: 234 GFRCPPDVYTYTILISSYCK 253
G P +TY+ILI +CK
Sbjct: 401 GV--VPSSFTYSILIDGFCK 418
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ F RMK + +PDV +YN V+ L R G F +A L+++M GF D+ TY+ +
Sbjct: 565 AIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEY--DLITYSSI 622
Query: 248 ISSYCK 253
+ + K
Sbjct: 623 LEAVGK 628
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 62/156 (39%), Gaps = 28/156 (17%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIV------------FARGNNVKGLWDFLKEMSRR 161
+A+E + W E+ KE G+V F + N V+ L+EM +
Sbjct: 386 RASEAFLWYEKM----------KENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEK 435
Query: 162 GNGELVTTSTVTC-LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
G C LI LG+ A F +++ Y V+I L + G
Sbjct: 436 G---FAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRL 492
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
++A L +M+ G C PDVY Y L+S + GM
Sbjct: 493 SEAVDLFNEMKKLG--CNPDVYAYNALMSGMVRVGM 526
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 166 LVTTSTVTCLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
+VT +TV IK L E + +EA + +MK+ P + Y+++I+ C+ KA
Sbjct: 370 VVTYNTV---IKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKAL 426
Query: 225 FLLEQMELPGFRCPPDVYTYTI 246
LLE+M+ GF P Y I
Sbjct: 427 LLLEEMDEKGFAPCPAAYCSLI 448
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ L+D +KE NG T T ++ + + G V +AL MK+ C
Sbjct: 243 LGRDDSAISLFDEMKE-----NGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCA 297
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
VY Y +I + + G +A + M G C PDV LI+ K G
Sbjct: 298 LTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEG--CKPDVVLINNLINLLGKAG 349
>gi|302796396|ref|XP_002979960.1| hypothetical protein SELMODRAFT_12814 [Selaginella moellendorffii]
gi|300152187|gb|EFJ18830.1| hypothetical protein SELMODRAFT_12814 [Selaginella moellendorffii]
Length = 220
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 125 FFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL 184
F H F E+ ++ G L + +K+ N +L ++ L + G
Sbjct: 20 FVHLFSAELMARQ-------GRQALALLEHMKKAEVPANAKLYNI-----ILTHLCKHGK 67
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
EAL + M C PD+Y YN++INALC+ G +KA L +E+P C PDV TY
Sbjct: 68 EKEALDLLHSMATTSCAPDIYTYNILINALCKAGMMDKAMDLF--VEMPTRGCIPDVVTY 125
Query: 245 TILISSYCKYG 255
++ +CK G
Sbjct: 126 NSIVDGFCKAG 136
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+ALA MK+ + YN+++ LC+ G +A LL M C PD+YTY I
Sbjct: 35 QALALLEHMKKAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTS--CAPDIYTYNI 92
Query: 247 LISSYCKYGM 256
LI++ CK GM
Sbjct: 93 LINALCKAGM 102
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + G++++A+ F M C PDV YN +++ C+ G +A L +M
Sbjct: 89 TYNILINALCKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEM 148
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
D +Y LIS+ CK G
Sbjct: 149 MRISKEGLVDAISYVALISTICKLG 173
>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22670, mitochondrial; Flags: Precursor
gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana]
gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 562
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 37/180 (20%)
Query: 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS 170
G N+A F+ W + H+ T M V + N +W+ + EM++ +LVT
Sbjct: 145 GWNQAYGFFIWANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLD 204
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQF-------------------------------- 198
T++ +++ L + G N+A+ F M++
Sbjct: 205 TMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLK 264
Query: 199 ---RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD +N++I+ C+ F+ AR +++ M++ F PDV TYT + +YCK G
Sbjct: 265 LFDTIKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEF--TPDVVTYTSFVEAYCKEG 322
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 73/160 (45%), Gaps = 16/160 (10%)
Query: 93 NVLVLGPAAYR--NPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKG 150
N+L+ G R + + + + K TEF V + F E CKE F R N
Sbjct: 277 NILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFV--EAYCKEGD--FRRVN---- 328
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+ L+EM R NG T T ++ LG+ V EAL + +MK+ C PD Y+ +
Sbjct: 329 --EMLEEM--RENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSL 384
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
I+ L + G F A + E M G R DV Y +IS+
Sbjct: 385 IHILSKTGRFKDAAEIFEDMTNQGVR--RDVLVYNTMISA 422
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
++A A MK PDV Y + A C+ G+F + +LE+M G C P+V TYT
Sbjct: 290 DDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENG--CNPNVVTYT 347
Query: 246 ILISSYCK 253
I++ S K
Sbjct: 348 IVMHSLGK 355
>gi|255579531|ref|XP_002530608.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529856|gb|EEF31788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 596
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 26/188 (13%)
Query: 68 RQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFH 127
+++G R L +R+L + D G YR F+ W +
Sbjct: 98 QESGVTMRAGLTERVLNRCGDA--------GNLGYR--------------FFVWASKQPG 135
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187
+ H+ K M +F++ +W L+EM R+ N L+T+ LI+ LV +
Sbjct: 136 YRHSYENYKAMVKIFSKMRQFGAVWALLEEM-RKDNSVLITSELFIVLIRRFASARLVEK 194
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ M ++ C PD Y + +++ALC+ G+ +A L E M + R P + +T L
Sbjct: 195 AIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKQAASLFEDMRV---RFSPSLRHFTSL 251
Query: 248 ISSYCKYG 255
+ +C+ G
Sbjct: 252 LYGWCREG 259
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ G + +A M + C P+ +Y ++I A C ++A + +ME G
Sbjct: 286 LLSAYSMAGKMTDAFDLLKEMVRKGCEPNANSYTIMIQAFCSQEKMDEAMRVFVEMERTG 345
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C DV TYT LIS +CK+G
Sbjct: 346 --CEADVVTYTALISGFCKWG 364
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 35/148 (23%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
++ + +D LKEM R+G ++ T +I+ + ++EA+ F M++ C
Sbjct: 289 AYSMAGKMTDAFDLLKEMVRKGCEP--NANSYTIMIQAFCSQEKMDEAMRVFVEMERTGC 346
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR------------------------ 236
DV Y +I+ C+ G N+ +L+ M+ G
Sbjct: 347 EADVVTYTALISGFCKWGKINRGYQILDAMKQKGHMPNQLTYLRILLAHEKKEELEECLE 406
Query: 237 ---------CPPDVYTYTILISSYCKYG 255
C PD+ Y ++I CK G
Sbjct: 407 LIESMRMVGCVPDLSIYNVVIRLACKLG 434
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ EG + EA +M++ PD+ +N +++A G A LL++M
Sbjct: 249 TSLLYGWCREGKLIEAKHVLVQMREAGFEPDIVVFNNLLSAYSMAGKMTDAFDLLKEMVR 308
Query: 233 PGFRCPPDVYTYTILISSYC 252
G C P+ +YTI+I ++C
Sbjct: 309 KG--CEPNANSYTIMIQAFC 326
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M+ C PD+ YNVVI C++G + + +ME F P++ T+ I+I +
Sbjct: 411 MRMVGCVPDLSIYNVVIRLACKLGEVKQGVQIWNEMEASDF--SPELDTFVIMIHGFLGQ 468
Query: 255 G 255
G
Sbjct: 469 G 469
>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
Length = 378
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTT--STVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F + + + L+EM ++G V T S + L+K EE +NEAL F MK+ +
Sbjct: 174 FGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKA--EE--INEALICFQSMKEMK 229
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+ Y Y+++IN LCRV +NKA ++M+ G P+V TYT +IS K G
Sbjct: 230 CSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGL--VPNVVTYTTMISGLAKVG 283
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M VF G+ KG F +G G L + + LI L + G E + F+ MKQ
Sbjct: 31 MDCVFKAGDVEKGRAIF---EDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQ 87
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
D AYN V++ C+ G +KA LE+M++ PP V TY +I K
Sbjct: 88 RGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVK--HVPPTVATYGSIIDGLAK 141
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ LI G+ G ++EA M + P+VY +N +++AL + N+A + M+
Sbjct: 168 SSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMK- 226
Query: 233 PGFRCPPDVYTYTILISSYCK 253
+C P+ YTY+ILI+ C+
Sbjct: 227 -EMKCSPNTYTYSILINGLCR 246
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F M + C+PD+ N ++ + + G+ K R + E ++ GF PDV +Y+ILI
Sbjct: 12 FKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGF--LPDVRSYSILIHGL 69
Query: 252 CKYG 255
K G
Sbjct: 70 TKAG 73
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V ++ L+EM + T +T +I L + ++EA F K
Sbjct: 104 FCKSGKVDKAYEALEEMKVKHVPP--TVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIE 161
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+V Y+ +I+ +VG ++A +LE+M G P+VYT+ L+ + K
Sbjct: 162 LNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGL--APNVYTWNSLMDALVK 211
>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
Length = 1184
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 4/143 (2%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
N F+ W + +FH+ CK M ++ ++ +W ++EM R+ N EL+
Sbjct: 112 NLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEM-RKTNPELIEPELF 170
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
L++ +V +A+ M ++ PD Y + +++ALC+ G+ +A + E M
Sbjct: 171 VVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMR- 229
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+ PP++ +T L+ +C+ G
Sbjct: 230 --EKFPPNLRYFTSLLYGWCREG 250
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN-FNKARFLLEQME 231
T L+ G + +A M++ P+V Y V+I ALCR ++A + +ME
Sbjct: 275 TNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEME 334
Query: 232 LPGFRCPPDVYTYTILISSYCKYGM 256
G C D+ TYT LIS +CK+GM
Sbjct: 335 RYG--CEADIVTYTALISGFCKWGM 357
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG--LVNEALATFYRMKQFR 199
F + + + L +M ++G V S VT + ++ E E L +MK+
Sbjct: 352 FCKWGMIDKGYSVLDDMRKKG----VMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRG 407
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C PD+ YNVVI C++G +A L +ME G P V T+ I+I+ + G
Sbjct: 408 CHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGL--SPGVDTFVIMINGFTSQG 461
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 36/148 (24%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE-EGLVNEALATFYRMKQFRC 200
+A + +D + +M +RG V TV LI+ L E ++EA+ F M+++ C
Sbjct: 281 YAHAGKMADAYDLMNDMRKRGFEPNVNCYTV--LIQALCRTEKRMDEAMRVFVEMERYGC 338
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR------------------------ 236
D+ Y +I+ C+ G +K +L+ M G
Sbjct: 339 EADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLE 398
Query: 237 ---------CPPDVYTYTILISSYCKYG 255
C PD+ Y ++I CK G
Sbjct: 399 LIEKMKRRGCHPDLLIYNVVIRLACKLG 426
>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
R K+ + ++ +F+ W + +F H+ T + V LW +++M +
Sbjct: 96 REVLKIDVEVHVKIQFFKWAGKKRNFEHDSTTYMALIRCLDENRLVGELWRTIQDMVKSP 155
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+ S ++ ++K+LG +VN+AL+ FY++K +CRP YN VI L + G+ K
Sbjct: 156 CA--IGPSELSEIVKILGRVKMVNKALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEK 213
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
L +M G C PD TY+ LIS++ K
Sbjct: 214 VHELYNEMCSEG-HCFPDTVTYSALISAFGK 243
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK G+ G NEA+ F MK+ C PDVYAYN +I + R ++A L ME G
Sbjct: 483 MIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENG 542
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD+ ++ I+++ + G
Sbjct: 543 --CNPDINSHNIILNGLARTG 561
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
MGI F G V+ + + EM R + T T T LI+ LG+ G V +A + M +
Sbjct: 273 MGIYFKLGK-VEEALNLVHEMRMRRC--VPTVYTYTELIRGLGKSGRVEDAYGVYKNMLK 329
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
C+PDV N +IN L R +A L E+M L C P+V TY +I S
Sbjct: 330 DGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRL--LNCTPNVVTYNTIIKS 380
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 10/139 (7%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFA---RGNNVKGLWDFLKEMSRRGNGELVTTS 170
K E Y+ + H F + VT + F R ++ L+D +KE NG T
Sbjct: 213 KVHELYNEMCSEGHCFPDTVTYSALISAFGKLNRDDSAVRLFDEMKE-----NGLQPTAK 267
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ + + G V EAL + M+ RC P VY Y +I L + G A + + M
Sbjct: 268 IYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNM 327
Query: 231 ELPGFRCPPDVYTYTILIS 249
G C PDV LI+
Sbjct: 328 LKDG--CKPDVVLMNNLIN 344
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR-VGNFNKARFLLEQMELP 233
LI +LG + EA+ F M+ C P+V YN +I +L ++A LE+M+
Sbjct: 342 LINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKD 401
Query: 234 GFRCPPDVYTYTILISSYCK 253
G P +TY+ILI +CK
Sbjct: 402 GV--VPSSFTYSILIDGFCK 419
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
R N GL++ +K++ G + LI + +++EA + F M++ C P
Sbjct: 491 GRFNEAMGLFNEMKKL-----GCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNP 545
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
D+ ++N+++N L R G +A + +M+ + PD +Y ++ + G+
Sbjct: 546 DINSHNIILNGLARTGGPKRAMEMFAKMKSSTIK--PDAVSYNTVLGCLSRAGL 597
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L G A+ F +MK +PD +YN V+ L R G F +A L+++M GF
Sbjct: 557 LARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFEY- 615
Query: 239 PDVYTYTILISSYCK 253
D+ TY+ ++ + K
Sbjct: 616 -DLITYSSILEAVGK 629
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 171 TVTCLIKVLGEEGLV-NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T +IK L E+ +EA + RMK+ P + Y+++I+ C+ KA LLE+
Sbjct: 373 TYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEE 432
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
M+ GF PP Y LI+S K
Sbjct: 433 MDEKGF--PPCPAAYCSLINSLGK 454
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC-LIKVLGEEGLVNEALATFYRMKQFRC 200
F + N V+ L+EM +G C LI LG+ A F +K+
Sbjct: 417 FCKTNRVEKALLLLEEMDEKG---FPPCPAAYCSLINSLGKAKRYEAANELFQELKENCG 473
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
V Y V+I + G FN+A L +M+ G C PDVY Y LI+ + M
Sbjct: 474 SSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLG--CIPDVYAYNALITGMVRADM 527
>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Glycine max]
Length = 747
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LIK L ++GL+ AL M + C P+++ YN+VIN LC++G + A L++ G
Sbjct: 371 LIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKG 430
Query: 235 FRCPPDVYTYTILISSYCK 253
CPPD++TY LI YCK
Sbjct: 431 --CPPDIFTYNTLIDGYCK 447
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
KA E ++ + F H T K + + + L EM N L+ + +
Sbjct: 22 KALEMFNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSEMRENVNNALLEGAYIE 81
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
+ K G +G V EA+ TF RM + C P V+++N ++N L G N+A + +M
Sbjct: 82 AM-KNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDR 140
Query: 234 GFRCPPDVYTYTILISSYCK 253
G + DVYTYTI I S+CK
Sbjct: 141 GVQ--SDVYTYTIRIKSFCK 158
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
D EM R + +T +T L+ L + G E + F M++ C P++ YN++
Sbjct: 452 DSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNII 511
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+++LC+ N+A LL +M+ G + PDV ++ L + +CK G
Sbjct: 512 VDSLCKAKKVNEAVDLLGEMKSKGLK--PDVVSFGTLFTGFCKIG 554
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + ++ G + + M ++ + TT+T ++ E+ +N A+ F MK C
Sbjct: 550 FCKIGDIDGAYQLFRRMEKQYD-VCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCD 608
Query: 202 PDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYC 252
PD Y Y VVI+ C++GN + +FLLE ME R P + T+ +++ C
Sbjct: 609 PDNYTYRVVIDGFCKMGNITQGYKFLLENMEK---RFIPSLTTFGRVLNCLC 657
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTV-TCLIKVLGEEGLVNEALATFYRM-KQF 198
+ V D L EM +G ++V+ T+ T K+ G ++ A F RM KQ+
Sbjct: 515 LCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKI----GDIDGAYQLFRRMEKQY 570
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN++++A N N A L M+ G C PD YTY ++I +CK G
Sbjct: 571 DVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSG--CDPDNYTYRVVIDGFCKMG 625
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+ EM+ NG L T +I L + G V++A C PD++ YN +I+
Sbjct: 387 LMNEMAE--NGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDG 444
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ + A ++ +M G PDV TY L++ CK G
Sbjct: 445 YCKQLKLDSATEMVNRMWSQGM--TPDVITYNTLLNGLCKAG 484
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA---------RF 225
L+ VL ++GLV E+ ++ + P+++ +N+ + LCR G ++A
Sbjct: 222 LVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEE 281
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L +M GF PD TY +I YCK GM
Sbjct: 282 YLRKMVNGGFE--PDDLTYNSIIDGYCKKGM 310
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V EA +M PD YN +I+ C+ G A +L+ GF+ PD +TY
Sbjct: 276 VVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFK--PDEFTY 333
Query: 245 TILISSYCKYG 255
LI+ +CK G
Sbjct: 334 CSLINGFCKDG 344
>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 642
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 78/149 (52%), Gaps = 2/149 (1%)
Query: 107 KVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL 166
K+ + IN +F+ W + +F H+ + + +W +++M R +
Sbjct: 102 KIDVEINVKIQFFKWAGKRRNFEHDSSSFMALIHSLDEAGFYGEMWKTIQDMVRSSTC-V 160
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
+++ ++ ++K+LG+ +VN+AL+ FY++K +C+P YN +I L + G+ K +
Sbjct: 161 ISSVYLSEIVKLLGKAKMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEI 220
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
+M G C PD TY+ LIS++ K G
Sbjct: 221 YNEMCNDG-NCFPDTVTYSALISAFGKLG 248
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+GI F + + V+ D +KEM +G +T T T IK LG+ G V++A F M +
Sbjct: 276 LGIYF-KLDKVEKALDVIKEMKDKGC--TLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIK 332
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
C+PDV N +IN L +VG L +ME ++C P+V TY +I +
Sbjct: 333 DGCKPDVVLINSLINILGKVGRLEVTLKLFRKME--SWQCKPNVVTYNTVIKA 383
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK G+ G ++EA+ F M++ +PDVYAYN +++ + R G ++A+ LL M+ G
Sbjct: 486 MIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENG 545
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
C PD+ ++ I+++ + G+
Sbjct: 546 --CSPDLNSHNIILNGLARTGV 565
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL--CRVGNFNKARFLLEQ 229
+ LI +LG+ G + L F +M+ ++C+P+V YN VI AL C+ A + E+
Sbjct: 342 INSLINILGKVGRLEVTLKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASW-FEK 400
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
M+ G P +TY+ILI +CK
Sbjct: 401 MK--GCGIAPSSFTYSILIDGFCK 422
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 171 TVTCLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T +IK L E + +EA + F +MK P + Y+++I+ C+ KA LLE+
Sbjct: 376 TYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEE 435
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
M+ GF PP Y LI+S K
Sbjct: 436 MDEKGF--PPCPAAYCSLINSLGK 457
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L G+ + A+ F +MK +PD +YN V+ L G F +A L+ +M L GF
Sbjct: 560 LARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKLMREMNLKGFEYN 619
Query: 239 PDVYT 243
YT
Sbjct: 620 NITYT 624
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D EM + G+ V L+ + G+++EA + M + C PD+ ++N+++N
Sbjct: 501 DLFNEMEKLGSKPDVYA--YNALMSGMVRAGMIDEAQSLLRTMDENGCSPDLNSHNIILN 558
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L R G ++A + +M+ + PD +Y ++ G+
Sbjct: 559 GLARTGVPDRAIEMFAKMKSSIIK--PDAVSYNTVLGCLSHAGL 600
>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 721
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 3/144 (2%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL-VTTSTV 172
KA F++W+ F HN T M + R N+ +FL + +R NGE+ +
Sbjct: 100 KAFLFFNWIHEK-GFSHNPQTYFIMLEILGREKNLNIARNFLYSIEKRSNGEVKLEDRFF 158
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
LI+ GE GL E++ F MK P V +N V+ L + G N A+ + ++M L
Sbjct: 159 NSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEM-L 217
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
+ PD YTY ILI +CK M
Sbjct: 218 KTYGVKPDTYTYNILIRGFCKNSM 241
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI+ + +V+E F M F C PDV YN +++ LCR G A L+
Sbjct: 226 TYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKIKVAHNLVN 285
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
M PDV TYT LI YC+
Sbjct: 286 GMSKKCKDLSPDVVTYTTLIRGYCR 310
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R +K + + MS++ T T LI+ + V+EAL M +
Sbjct: 271 LCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLK 330
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++ YN +I LC ++K + +LEQM+ G PD T+ LI+S+C G
Sbjct: 331 PNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSI-PDACTFNTLINSHCCAG 383
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 19/112 (16%)
Query: 148 VKGL-----WDFLKEM--SRRGNGELVTTS-TVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+KGL WD +KE+ +G+G + + T LI G ++EA F MK+
Sbjct: 340 IKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVFENMKKLE 399
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
D +Y+V+I LC+ G++ KA L +++ + IL+SSY
Sbjct: 400 VSADSASYSVLIRTLCQKGDYGKAEMLFDEL-----------FEKEILLSSY 440
>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Cucumis sativus]
Length = 576
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
GNNVK + + M R +G TT T T LI V G+E + A F M+ RC+P++
Sbjct: 239 GNNVKAV-EIFHRMKR--DGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNI 295
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ ++NAL R G KA + EQM+ G+ PDVY Y L+ SY + G
Sbjct: 296 CTFTALVNALAREGLCEKAEEIFEQMQEAGYE--PDVYAYNALMESYSRAG 344
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L+K + GL+ +A A F M+++ P YN I+ L + GN KA +
Sbjct: 189 TEDTYALLLKAYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIF 248
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
+M+ G C P TYT+LI+ Y K
Sbjct: 249 HRMKRDG--CQPTTDTYTMLINVYGK 272
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
++ NV D + +M + +G T + ++ + G G + F M++ C
Sbjct: 409 AYSSAGNVAKCEDIIGQMHK--SGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPC 466
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
R D+ YN++IN R G + L + LP PDV T+T I +Y +
Sbjct: 467 RADISTYNILINVYGRAGFVERMEELFQL--LPAKNLEPDVVTWTSRIGAYSR 517
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L++ G A F M+ C PD +YN++++A R G A+ + E+M+ G
Sbjct: 336 LMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIG 395
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P + ++ +L+S+Y G
Sbjct: 396 I--TPTMKSHMLLLSAYSSAG 414
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 182 EGLVN-----EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
+GLV +A+ F+RMK+ C+P Y ++IN + + A+ + ++M R
Sbjct: 233 DGLVKGGNNVKAVEIFHRMKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQ--R 290
Query: 237 CPPDVYTYTILISSYCKYGM 256
C P++ T+T L+++ + G+
Sbjct: 291 CKPNICTFTALVNALAREGL 310
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ G GL +A A F MK+ P + ++ ++++A GN K ++ QM G
Sbjct: 371 MVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSG 430
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ PD + +++ Y + G
Sbjct: 431 LK--PDTFVMNSMLNLYGRLG 449
Score = 37.0 bits (84), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 150 GLWDFLKEMSRRGN--GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
GLWD L + + ++++ + L K G L+ E + M + RPDV Y
Sbjct: 104 GLWDSLDTLPATNSTWDDIISVAVQLRLNKKWGPIILICEWI-----MNKSTFRPDVIVY 158
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
N++++A + + +EL C P TY +L+ +YCK G+
Sbjct: 159 NLLMDAYGQRSLYKDVESTY--LELLESHCIPTEDTYALLLKAYCKSGL 205
>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
Length = 1320
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+EVT + + + +K + +M ++G V T T L L + G ++ A
Sbjct: 416 DEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVT--YTALADGLCKNGEIDVANE 473
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+ M + +P+VY YN ++N LC++GN + L+E+M+L GF PD TYT L+ +
Sbjct: 474 LLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFY--PDTITYTTLMDA 531
Query: 251 YCKYG 255
YCK G
Sbjct: 532 YCKMG 536
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I + G V+ A F M++ + PD+ Y VI+ +C+ G +AR + +M +
Sbjct: 351 TTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLV 410
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G PD TYT LI YCK G
Sbjct: 411 KGLE--PDEVTYTALIDGYCKAG 431
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I +L + G V EA M+++ PD Y VI+ C++GN + A L ++M
Sbjct: 318 IILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRK- 376
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ PD+ TYT +I CK G
Sbjct: 377 -KIVPDIVTYTSVIHGICKSG 396
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN----GELVTTSTVTCLIKVLGEEGLVN 186
N V+C + + V+ + L +M+ RGN + C I G ++
Sbjct: 241 NTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRI------GELD 294
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+ L +K +PD Y YN +I LC+ G +A LL M G PD YT
Sbjct: 295 KVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVF--PDNVVYTT 352
Query: 247 LISSYCKYG 255
+IS +CK G
Sbjct: 353 VISGFCKLG 361
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 153 DFLKEMSRRGNGELVTT--STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+ L EMSR+G V T + V L K+ G + + + M PD Y +
Sbjct: 473 ELLHEMSRKGLQPNVYTYNTIVNGLCKI----GNIEQTVKLMEEMDLAGFYPDTITYTTL 528
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
++A C++G KA LL M R P + T+ +L++ +C GM
Sbjct: 529 MDAYCKMGEMAKAHELLRIM--LNKRLQPTLVTFNVLMNGFCMSGM 572
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + NV EM R+ + T T +I + + G + EA F M
Sbjct: 357 FCKLGNVSAACKLFDEMRRKKIVPDIVT--YTSVIHGICKSGKMVEAREMFNEMLVKGLE 414
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y +I+ C+ G +A + QM G P+V TYT L CK G
Sbjct: 415 PDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLT--PNVVTYTALADGLCKNG 466
Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 167 VTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
V +TV+C ++ L + G V EA +M PDV +Y VV++ CR+G +K
Sbjct: 238 VCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVL 297
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L+++++ G + PD Y Y +I CK G
Sbjct: 298 KLVDELKGKGLK--PDEYIYNNIILLLCKNG 326
>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1163
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL-VTTST 171
+KA +F++W F HN+ + M + R N+ +FL + RR NG + +
Sbjct: 100 SKALQFFNWAPEL-GFTHNDQSYFLMLEILGRARNLNVARNFLFSIKRRSNGTVKLEDRF 158
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
LI+ G+ GL E++ F MK P V +N ++ L + G N A+ + ++M
Sbjct: 159 FNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEM- 217
Query: 232 LPGFRCPPDVYTYTILISSYCKYGM 256
L + PD YT+ ILI +CK M
Sbjct: 218 LSTYGVTPDTYTFNILIRGFCKNSM 242
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI+ + +V+E F M +F+C PD+ YN +++ LCR G N A ++
Sbjct: 227 TYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVN 286
Query: 229 QMELPGFRCPPDVYTYTILISSYC 252
M PDV TYT L+ YC
Sbjct: 287 GMVKKSTNLNPDVVTYTTLVRGYC 310
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G + T T+ L+ G +N+AL F +M RPD Y+V+I LC+ GNF
Sbjct: 363 GGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFE 422
Query: 222 KARFLLEQME-----LPGFRCPPDVYTYTILISSYCKYG 255
+A L +++ L C P V Y + C+ G
Sbjct: 423 RAEQLFDELSEKEILLRDDGCTPLVAAYKSMFEFLCRNG 461
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L++ + ++EAL F M +P+ YN +I LC V +K + + E
Sbjct: 301 TYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGA 360
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L G PD T L++++C G
Sbjct: 361 -LGGGGFIPDTCTLNTLMNAHCNAG 384
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 142 FARGNNVKGLWDFLKEMSR-RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM--KQF 198
F + + V + F KEMSR + + +LVT +T L+ L G VN A M K
Sbjct: 237 FCKNSMVDEGFRFFKEMSRFKCDPDLVTYNT---LVDGLCRAGKVNIAHNVVNGMVKKST 293
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDV Y ++ C ++A + E+M G + P+ TY LI C+
Sbjct: 294 NLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLK--PNEITYNTLIKGLCE 346
>gi|356509602|ref|XP_003523536.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Glycine max]
Length = 598
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T TV L++ L G ++EA ++ F C PDV YN +I+ LCR+ ++AR LL
Sbjct: 175 VTYTVNILMRGLCRAGEIDEAFRLLNDLRSFGCLPDVITYNTLIHGLCRINEVDRARSLL 234
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKY 254
+++ L G PDV +YT +IS YCK+
Sbjct: 235 KEVCLNG-EFAPDVVSYTTIISGYCKF 260
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R V D +M+ + G T T + L+ L +++A + +
Sbjct: 327 YFRLGQVHQAMDMWHKMNDKNIG--ATLYTFSVLVSGLCNNNRLHKARDILRLLNESDIV 384
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P + YN VI+ C+ GN ++A ++ +ME+ RC PD T+TILI +C G
Sbjct: 385 PQPFIYNPVIDGYCKSGNVDEANKIVAEMEVN--RCKPDKLTFTILIIGHCMKG 436
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EM R G T T LI G+ G + ALA + +M C PDV + +IN R
Sbjct: 272 EMIRSGTAP--NTFTFNALIGGFGKLGDMASALALYEKMLVQGCVPDVATFTSLINGYFR 329
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+G ++A + +M +YT+++L+S C
Sbjct: 330 LGQVHQAMDMWHKMNDKNI--GATLYTFSVLVSGLC 363
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R N V LKE+ NGE + T +I + + E F M +
Sbjct: 221 LCRINEVDRARSLLKEVCL--NGEFAPDVVSYTTIISGYCKFSKMEEGNLLFGEMIRSGT 278
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ + +N +I ++G+ A L E+M + G C PDV T+T LI+ Y + G
Sbjct: 279 APNTFTFNALIGGFGKLGDMASALALYEKMLVQG--CVPDVATFTSLINGYFRLG 331
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + +T T LI G V++A+ +++M +Y ++V+++ LC +KA
Sbjct: 312 GCVPDVATFTSLINGYFRLGQVHQAMDMWHKMNDKNIGATLYTFSVLVSGLCNNNRLHKA 371
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R +L + P + Y +I YCK G
Sbjct: 372 RDILRLLNESDI--VPQPFIYNPVIDGYCKSG 401
>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 712
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query: 136 KEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
K M + + R + + +LK+M RG V +T T +I E+G VN A F +
Sbjct: 232 KLMVVGYCRMGRISDVDRWLKDMIERGYA--VDNATCTLMISTFSEKGFVNRAFWYFKKW 289
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Q P++ ++ +IN LC++G+ +A +LE+M G++ P+VYT+T LI CK G
Sbjct: 290 VQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWK--PNVYTHTALIDGLCKKG 347
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVY 205
++K ++ L+EM R+G V T T LI L ++G +A F ++ + +P+VY
Sbjct: 313 SIKQAFEMLEEMVRKGWKPNVYTHTA--LIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVY 370
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +IN C+ N+A LL +M+ G P+ TYT LI +CK G
Sbjct: 371 TYTCMINGYCKEEKLNRAEMLLIRMKEQGL--VPNTNTYTCLIDGHCKAG 418
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T TC+I +E +N A RMK+ P+ Y +I+ C+ GNF +A L++ M
Sbjct: 371 TYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLM 430
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF P+++TY +I CK G
Sbjct: 431 GKEGF--TPNIFTYNAIIDGLCKKG 453
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 131 NEVTCKEMGIVFARGNNV-KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189
+ TC M F+ V + W F K + N L+ S+ LI L + G + +A
Sbjct: 262 DNATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSS---LINGLCKIGSIKQAF 318
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILI 248
M + +P+VY + +I+ LC+ G KA R L+ + ++ P+VYTYT +I
Sbjct: 319 EMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYK--PNVYTYTCMI 376
Query: 249 SSYCK 253
+ YCK
Sbjct: 377 NGYCK 381
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G L T T T +I +G ++ A+ F++M+ + C+PD Y +I+ LC +
Sbjct: 537 GLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLD 596
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A L E M G P T L YCK G
Sbjct: 597 EACQLYETMIDNGL--SPCEVTRVTLAYEYCKQG 628
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ G + T+T TCLI + G A M + P+++ YN +I+ LC+ G F
Sbjct: 396 KEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRF 455
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+A LL + G D TYTILIS +C+
Sbjct: 456 PEAYKLLRRGLKSGLH--ADKVTYTILISEFCR 486
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 160 RRG--NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
RRG +G T T LI + +ALA F RM + +PD++ YNV+I CR
Sbjct: 463 RRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQ 522
Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ L E E G P TYT +I YC+ G
Sbjct: 523 KKVEESEKLFE--EAVGLGLLPTKETYTSMICGYCRDG 558
>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
Length = 699
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 11/122 (9%)
Query: 141 VFARGNNVKGLWD----FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
+ RG + G D L+EM G G V +T L+K L + G V EAL F M
Sbjct: 62 ILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTT---LMKGLCDAGRVVEALEHFRAM 118
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ C PDV Y +++ALC+ G F++A+ +L +M G C PD T++ LI CK+G
Sbjct: 119 AK-DCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQG--CAPDTVTFSTLIDGLCKFG 175
Query: 256 MQ 257
+
Sbjct: 176 SE 177
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ N V L++M G + +VT STV I L ++G V++A F M++ C
Sbjct: 277 LCKANRVGEAQQLLEKMVMGGCSPNVVTYSTV---INGLCKQGQVDDAYELFQLMERRNC 333
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+V +N++I+ LC+ +AR L +M G C PD+ TY LI CK
Sbjct: 334 PPNVVTHNILIDGLCKAKRIEEARQLYHRMRETG--CAPDIITYNSLIDGLCK 384
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 113 NKATEFYHWVERFFHFFHN-EVTCKEMGIVFARG------------------NNVKGLWD 153
N F ++R + +++ E+ K +G+V A+G ++ +
Sbjct: 194 NSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYK 253
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+ M +G V T T+ LI L + V EA +M C P+V Y+ VIN
Sbjct: 254 LLEVMIEKGCVPNVFTFTI--LITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVING 311
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC+ G + A L + ME CPP+V T+ ILI CK
Sbjct: 312 LCKQGQVDDAYELFQLMERR--NCPPNVVTHNILIDGLCK 349
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M + C P+V+ + ++I LC+ +A+ LLE+M + G C P+V TY+ +I+ CK
Sbjct: 258 MIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGG--CSPNVVTYSTVINGLCKQ 315
Query: 255 G 255
G
Sbjct: 316 G 316
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L +MS RG V S+ L+ L +EA F M P++ NVVI+
Sbjct: 573 LLHKMSERGFAAAV--SSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISW 630
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC + A L+++M G C PD+ T LI YCK G
Sbjct: 631 LCSAAKVDDAYELVQRMSKLG--CCPDIETCNTLIGGYCKSG 670
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
STV +I L V++A RM + C PD+ N +I C+ G + AR LLE+
Sbjct: 622 STVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEE 681
Query: 230 MELPGFRCPPDVYTYTIL 247
M G P+ T+ +L
Sbjct: 682 MTEAGLE--PNDTTHDLL 697
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ V ++ + M RR V T + LI L + + EA ++RM++ C
Sbjct: 312 LCKQGQVDDAYELFQLMERRNCPPNVVTHNI--LIDGLCKAKRIEEARQLYHRMRETGCA 369
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ YN +I+ LC+ ++A L + + G + TY+ L Y G
Sbjct: 370 PDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVS-AANAVTYSTLFHGYAALG 422
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 32/117 (27%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ C + +L EALA F C P+ + Y ++I G+ + A LLE+M
Sbjct: 24 SCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEM 83
Query: 231 ELPGFR--------------------------------CPPDVYTYTILISSYCKYG 255
+ GF C PDV TYT L+ + CK G
Sbjct: 84 KSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCAPDVMTYTALVHALCKAG 140
>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 445
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG---LVNEALATFYRMKQF 198
F +K + L EM + V T +V LI LG+EG +V+EA++ F MK
Sbjct: 243 FCIMGKMKEAFSLLNEMKLKNINPDVYTFSV--LIDALGKEGKKKMVDEAMSLFEEMKHK 300
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ YN +I+ LC+ + +A LL++M+ G + PDVY+YTIL+ CK G
Sbjct: 301 NMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQ--PDVYSYTILLDGLCKGG 355
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + + A+A MK+ +PDVY+Y ++++ LC+ G A+ + +
Sbjct: 308 TYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHL 367
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
+ G C +V+ Y ++I+ CK G+
Sbjct: 368 LVKG--CHLNVWPYNVMINGLCKAGL 391
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
LKEM G V + T+ L+ L + G + A F + C +V+ YNV+IN
Sbjct: 328 LLKEMKEHGIQPDVYSYTI--LLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMING 385
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
LC+ G F +A L +ME G C P+ T+ +I +
Sbjct: 386 LCKAGLFGEAMDLKSKME--GKGCMPNAITFRTIICA 420
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D EM +G V T T LI G + EA + MK PDVY ++V+I+
Sbjct: 219 DVYSEMIVKGISPDVVTYTT--LIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLID 276
Query: 213 ALCRVGN---FNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
AL + G ++A L E+M+ PD+ TY LI CK
Sbjct: 277 ALGKEGKKKMVDEAMSLFEEMKHKNMI--PDIVTYNSLIDGLCK 318
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G +++ +PDV YN +IN+LC+ A + +M + G
Sbjct: 169 LINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKG 228
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PDV TYT LI +C G
Sbjct: 229 IS--PDVVTYTTLIHGFCIMG 247
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG T++ LI + + A + F + + PD N +I LC G K
Sbjct: 87 NGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKK 146
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +Q+ GF+ D +Y LI+ CK G
Sbjct: 147 TLYFHDQVVAQGFQL--DQVSYGTLINGLCKAG 177
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+ LIK L G + + L ++ + D +Y +IN LC+ G LL ++
Sbjct: 130 TLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKL 189
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E G PDV Y +I+S CK
Sbjct: 190 E--GHSVKPDVVMYNTIINSLCK 210
>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
Length = 768
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Query: 125 FFHFFHNEVT-CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG 183
F F + VT C + + A G+ + L F + ++ +LV ++ L+K L +G
Sbjct: 343 FKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNS---LVKGLCRQG 399
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
L+ AL M + C PD++ YN++IN LC++GN + A ++ + G+ PDV+T
Sbjct: 400 LILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYL--PDVFT 457
Query: 244 YTILISSYCK 253
+ LI YCK
Sbjct: 458 FNTLIDGYCK 467
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
L ++ +RG ++ + TC I + G E+G + EA+A RM + PDV YN ++
Sbjct: 233 LLAKVLKRG----MSANKFTCNIWIRGLCEDGRLEEAVALVERMGAY-VAPDVVTYNTLM 287
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC+ +A L +M G C PD +TY +I YCK GM
Sbjct: 288 RGLCKDSKVQEAAQYLGRMMNQG--CIPDDFTYNTIIDGYCKSGM 330
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L EG + AL F + +PD+ YN ++ LCR G A ++ +M
Sbjct: 352 TYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEM 411
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C PD++TY I+I+ CK G
Sbjct: 412 VEEG--CHPDIWTYNIIINGLCKMG 434
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++ AL RM + PDV YN V+N LC+ G + E+M L G C P+ TY
Sbjct: 471 LDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKG--CRPNAITY 528
Query: 245 TILISSYCK 253
ILI ++CK
Sbjct: 529 NILIENFCK 537
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 164 GELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G V VT L++ L ++ V EA RM C PD + YN +I+ C+ G
Sbjct: 273 GAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQ 332
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A LL+ GF PD TY LI+ C G
Sbjct: 333 EATELLKDAVFKGF--VPDRVTYCSLINGLCAEG 364
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
I+ G + A+ F RM F C P AYN +++AL ++A + +M G
Sbjct: 78 IQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGV 137
Query: 236 RCPPDVYTYTILISSYCKYG 255
PD T+T+ + S+C G
Sbjct: 138 --APDARTHTVRLKSFCLTG 155
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+ EA RM Q PD ++N +I+ CR G+ + A L ++++ G+ D T+
Sbjct: 541 LEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATAD--TF 598
Query: 245 TILISSY-CKYGMQ 257
ILI +Y K MQ
Sbjct: 599 NILIGAYSSKLNMQ 612
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T ++ L + G E TF M CRP+ YN++I C++ +A ++ +M
Sbjct: 492 TYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRM 551
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PD ++ LI +C+ G
Sbjct: 552 CQDGL--VPDAVSFNTLIHGFCRNG 574
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R ++ G + +++ +G T T LI + + A F M +
Sbjct: 570 FCRNGDLDGAYLLFQKLDEKGYS--ATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYK 627
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
PD+Y Y ++++ LC+ N ++A L +M GF
Sbjct: 628 PDLYTYRILVDGLCKAANVDRAYAHLAEMISKGF 661
>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
Length = 847
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Query: 125 FFHFFHNEVT-CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG 183
F F + VT C + + A G+ + L F + ++ +LV ++ L+K L +G
Sbjct: 247 FKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNS---LVKGLCRQG 303
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
L+ AL M + C PD++ YN+VIN LC++GN + A ++ + G+ PDV+T
Sbjct: 304 LILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYL--PDVFT 361
Query: 244 YTILISSYCK 253
+ +I YCK
Sbjct: 362 FNTMIDGYCK 371
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L EG V AL F + +PD+ YN ++ LCR G A ++ +M
Sbjct: 256 TYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEM 315
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C PD++TY I+I+ CK G
Sbjct: 316 VEDG--CHPDIWTYNIVINGLCKMG 338
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++ AL RM + PD YN V+N LC+ G + E+M L G C P+ TY
Sbjct: 375 LDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKG--CRPNAITY 432
Query: 245 TILISSYCK 253
ILI ++CK
Sbjct: 433 NILIENFCK 441
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
L ++ +RG ++ + TC I + G E G + EA+A M + PDV YN ++
Sbjct: 137 LLAKVLKRG----MSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAY-IAPDVVTYNTLM 191
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC+ +A L +M G C PD +TY +I YCK M
Sbjct: 192 RGLCKDSKVQEAAQYLRRMMNQG--CIPDDFTYNTIIDGYCKRDM 234
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N+ TC G ++ ++ M ++VT +T L++ L ++ V EA
Sbjct: 149 NKFTCNIWIRGLCEGGRLEEAVALVESMDAYIAPDVVTYNT---LMRGLCKDSKVQEAAQ 205
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
RM C PD + YN +I+ C+ +A LL+ GF PD TY LI+
Sbjct: 206 YLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGF--VPDRVTYCSLING 263
Query: 251 YCKYG 255
C G
Sbjct: 264 LCAEG 268
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+ EA RM Q PD ++N +I+ CR G+ + A L ++++ G+ D T+
Sbjct: 445 LEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATAD--TF 502
Query: 245 TILISSY-CKYGMQ 257
ILI +Y K MQ
Sbjct: 503 NILIGAYSSKLNMQ 516
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L + G E TF M CRP+ YN++I C++ +A ++ +M G
Sbjct: 404 LCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGL--V 461
Query: 239 PDVYTYTILISSYCKYG 255
PD ++ LI +C+ G
Sbjct: 462 PDTISFNTLIHGFCRNG 478
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R ++ G + +++ +G T T LI + + A F M +
Sbjct: 474 FCRNGDLDGAYLLFQKLDEKGYS--ATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYK 531
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
PD+Y Y V+++ C+ N ++A L +M GF P + T+ +++S
Sbjct: 532 PDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGF--VPSMATFGRVLNS 578
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV+ +N +I+ C+ + A L+E+M + G PD TY +++ CK G
Sbjct: 357 PDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGI--APDAITYNSVLNGLCKAG 408
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTT--STVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F + + + L+EM ++G V T S + L+K EE +NEAL F MK+ +
Sbjct: 678 FGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVK--AEE--INEALVCFQSMKEMK 733
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+ Y Y+++IN LCRV +NKA + M+ G P+V TYT +IS K G
Sbjct: 734 CPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGL--VPNVVTYTTMISGLAKVG 787
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ LI G+ G ++EA M + P+VY +N +++AL + N+A + M+
Sbjct: 672 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMK- 730
Query: 233 PGFRCPPDVYTYTILISSYCK 253
+CPP+ YTY+ILI+ C+
Sbjct: 731 -EMKCPPNTYTYSILINGLCR 750
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L++M G V T L++ L EG V +ALA +K PD+ YNV I+
Sbjct: 200 ELLRQMQEVGYE--VGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCID 257
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ GN + A +++ G + PD +YT +I CK G
Sbjct: 258 CFGKAGNVDMAWKFFHELKAQGLK--PDDVSYTSMIWVLCKAG 298
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + NV W F E+ + G + T +I VL + G + EA F +M+ R
Sbjct: 259 FGKAGNVDMAWKFFHEL--KAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSV 316
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P YAYN +I G F A LLE++ G C P V ++ +++ K
Sbjct: 317 PCAYAYNTMIMGYGSAGRFEDAYKLLERLRERG--CIPSVVSFNSILTCLGK 366
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTT--STVTCLIKVLGEEGLVNEALATFYRM 195
M + + + + L+ + RG V + S +TCL G++ V+EAL+ F M
Sbjct: 325 MIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCL----GKKRKVDEALSLFEVM 380
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
K+ P+ YN++I+ LC G +A +L++ME P++ T I++ CK
Sbjct: 381 KK-DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLF--PNLLTVNIMVDRLCK 435
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M VF G KG F R G L + + LI L + G E F+ MKQ
Sbjct: 535 MDCVFKAGEVEKGRMIF---EDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQ 591
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC-PPDVYTYTILISSYCK 253
D AYN V++ C+ G +KA +LE+M+ +C P V TY ++ K
Sbjct: 592 QGFALDARAYNAVVDGFCKSGKVHKAYEILEEMK---EKCVQPTVATYGAIVDGLAK 645
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 85/218 (38%), Gaps = 63/218 (28%)
Query: 82 ILKKEAD------NIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFH--FFHNEV 133
++KK+A+ NI ++L LG + E Y ++ H F N +
Sbjct: 379 VMKKDAEPNSSTYNIIIDMLCLG--------------GRVEEAYRILDEMEHASLFPNLL 424
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATF 192
T M + ++ + + S+RG N + VT + LI LG++G V+EA F
Sbjct: 425 TVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCS---LIDGLGKKGQVDEAYRLF 481
Query: 193 YRM-----------------------------KQFR------CRPDVYAYNVVINALCRV 217
+M K F+ C+PD+ N ++ + +
Sbjct: 482 EKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKA 541
Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
G K R + E + GF PDV +Y+ILI K G
Sbjct: 542 GEVEKGRMIFEDIRSYGFL--PDVRSYSILIHGLTKAG 577
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
I G+ G V+ A F+ +K +PD +Y +I LC+ G +A L QME
Sbjct: 256 IDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAE-- 313
Query: 236 RCPPDVYTYTILISSYCKYG 255
R P Y Y +I Y G
Sbjct: 314 RSVPCAYAYNTMIMGYGSAG 333
>gi|224068054|ref|XP_002302657.1| predicted protein [Populus trichocarpa]
gi|222844383|gb|EEE81930.1| predicted protein [Populus trichocarpa]
Length = 602
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A +F+ W + + H K M V ++ +W L+EM RR N L+T+
Sbjct: 98 AYKFFVWASKQPCYRHCYENYKAMIKVLSKMKQFGAVWALLEEM-RRDNSVLITSEVFVV 156
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++ +VN+A+ M ++ C PD Y + +++ALC+ G+ +A L E M +
Sbjct: 157 VMRRFASSRMVNKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRV-- 214
Query: 235 FRCPPDVYTYTILISSYCKYG 255
R P + +T L+ +CK G
Sbjct: 215 -RFSPSLKHFTCLLYGWCKEG 234
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + +A +++ C P+ +Y ++I ALC ++A + +ME G C DV
Sbjct: 269 GKMGDAFDLLKEIRRKGCDPNATSYTILIQALCGQEKMDEAMRVFVEMERSG--CDADVV 326
Query: 243 TYTILISSYCKYGM 256
TYT L+S +CK+ M
Sbjct: 327 TYTALVSGFCKWRM 340
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 35/147 (23%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+A + +D LKE+ R+G T+ T+ LI+ L + ++EA+ F M++ C
Sbjct: 265 YATAGKMGDAFDLLKEIRRKGCDPNATSYTI--LIQALCGQEKMDEAMRVFVEMERSGCD 322
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQM------------------------------- 230
DV Y +++ C+ +K +L+ M
Sbjct: 323 ADVVTYTALVSGFCKWRMIDKGYQILQSMIQKGHMPNQLTYLHLMLAHEKKEELEECKEL 382
Query: 231 --ELPGFRCPPDVYTYTILISSYCKYG 255
E+ C PD+ Y ++I CK G
Sbjct: 383 MGEMQKIGCIPDLSIYNVVIRLACKLG 409
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
TCL+ +EG + EA +M++ PD+ YN +++ G A LL+++
Sbjct: 224 TCLLYGWCKEGKLLEAKHVLVQMREAGFEPDIVVYNNLLSGYATAGKMGDAFDLLKEIRR 283
Query: 233 PGFRCPPDVYTYTILISSYC 252
G C P+ +YTILI + C
Sbjct: 284 KG--CDPNATSYTILIQALC 301
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M++ C PD+ YNVVI C++G N +ME+ G P + T+ I+I+ + +
Sbjct: 386 MQKIGCIPDLSIYNVVIRLACKLGEVNAGVDAWNEMEVSGL--SPGLDTFVIMINGFLGH 443
Query: 255 G 255
G
Sbjct: 444 G 444
>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE +R GL+D + EM NG T T LI + G ++ AL F
Sbjct: 307 CKE-----SRVEEANGLFDEMCEMGLVPNG-----VTFTTLIDGQCKHGKIDLALRNFEI 356
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
MK RPD+ YN +IN LCR G+ +AR LL +M GF+ PD T+T L+ CK
Sbjct: 357 MKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFK--PDKITFTTLMDGCCKD 414
Query: 255 G 255
G
Sbjct: 415 G 415
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++K L EM GNG T T L+ ++G ++ AL RM +
Sbjct: 376 LCRDGDLKEARKLLNEMI--GNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIE 433
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D A+ +I+ LCR G A +L+ M G + PD TYT++I +CK G
Sbjct: 434 LDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHK--PDDPTYTMVIDCFCKKG 485
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVT---CLIKVLGEEGLVNEALATFYRMKQ 197
F + +V E+SRRG +V+ +T+ C K + EEG V +++ M+
Sbjct: 236 FCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNV-EEGFVLKSV-----MES 289
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R PDV+ Y+ +IN LC+ +A L ++M G P+ T+T LI CK+G
Sbjct: 290 ERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGL--VPNGVTFTTLIDGQCKHG 345
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+VY +N++++ C++G+ AR + +++ G R P V ++ LIS YC+
Sbjct: 224 PNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLR--PSVVSFNTLISGYCR 273
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R V+ LK+M G+ T T +I ++G V M++
Sbjct: 446 LCRDGRVRDAERMLKDMLSAGHKP--DDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRV 503
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P V YN ++N C+ G A+ LL M P+ T+ IL+ +CK+G
Sbjct: 504 PGVVTYNALMNGFCKQGQMKNAKMLLHAML--NMEVVPNDITFNILLDGHCKHG 555
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI L +G V +A M +PD Y +VI+ C+ G+ LL++M+
Sbjct: 440 TALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQR 499
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G P V TY L++ +CK G
Sbjct: 500 DGR--VPGVVTYNALMNGFCKQG 520
>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
Length = 2052
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L + G EAL + M C PD+Y YN++INALC+VG A+ L+E M+ CP
Sbjct: 1742 LCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQ--ARECP 1799
Query: 239 PDVYTYTILISSYCKYG 255
D+ TY LI C+ G
Sbjct: 1800 TDIVTYNTLIHGLCRKG 1816
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 20/144 (13%)
Query: 124 RFFHFFHNEVTCKEMGIVFARGNNVKGLWDFL--KEMSRRGNGELVTTS----------T 171
+FF + H F R L +FL K +R + L+ S T
Sbjct: 1646 QFFEWCHGRHGYTHTAFAFNR------LLEFLVNKRQYKRAHQMLIAESKPSSFQANAFT 1699
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ +++ E+G +ALA MK+ + YN+++ LC+ G +A LL M
Sbjct: 1700 YSTIVRGYCEDGETRQALALLEHMKKAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMA 1759
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
C PD+YTY ILI++ CK G
Sbjct: 1760 TTS--CAPDIYTYNILINALCKVG 1781
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G T+ T T +I L + +A M + C D+ YN++IN + G +KA
Sbjct: 1836 GHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKA 1895
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L +E+P C PDV TY ++ +CK G
Sbjct: 1896 MDLF--VEMPTRGCIPDVVTYNSIVDGFCKAG 1925
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG T LI + G++++A+ F M C PDV YN +++ C+ G +
Sbjct: 1870 NGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEE 1929
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A L +M+ G P+ TYT + + K G
Sbjct: 1930 ANKLFAEMKARGIF--PNGRTYTSITDACLKAG 1960
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN----FNKARFL 226
T LI L + G + +A M+ C D+ YN +I+ LCR GN +A L
Sbjct: 1769 TYNILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRKGNGRFRVERAFRL 1828
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
E+M G P TYT++I + + M
Sbjct: 1829 FEEMVDKGH--TPTSVTYTVVIDALLRVKMD 1857
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG----LVNEALATFYRMKQF 198
R + +GL + ++ +R ++VT +T LI L +G V A F M
Sbjct: 1781 GRLEDAQGLVEMMQ--ARECPTDIVTYNT---LIHGLCRKGNGRFRVERAFRLFEEMVDK 1835
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P Y VVI+AL RV +A+ +L+ M G C D+ TY +LI+ + K GM
Sbjct: 1836 GHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENG--CAFDLVTYNMLINRFAKAGM 1891
>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Vitis vinifera]
Length = 641
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
RGN V F +E + G + + LI+ L G V++A F M+ F C
Sbjct: 212 LVRGNQVDEAVCFFRE--QMGLHGPFDSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCS 269
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV YN +IN CRV ++ LL+++ L PDV TYT +IS YCK G
Sbjct: 270 PDVITYNTLINGFCRVNEVDRGHDLLKEL-LSKNDLSPDVVTYTSIISGYCKLG 322
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++KA E ++ + R F + +T + F R N V D LKE+ + N T
Sbjct: 253 VDKAFELFNEM-RGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSK-NDLSPDVVT 310
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
T +I + G + +A F M +P+ + +N++IN +VG+ A + E+M
Sbjct: 311 YTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEML 370
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
L G CPPD+ T+T LI +C+ G
Sbjct: 371 LLG--CPPDIITFTSLIDGHCRTG 392
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L L +E ++EA +K + YN VI+ C+ GN ++A +L +M
Sbjct: 415 TFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEM 474
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E RC PD TYTILI +C G
Sbjct: 475 EEK--RCKPDKITYTILIIGHCMKG 497
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I + G V+EA M++ RC+PD Y ++I C G ++A + +M G
Sbjct: 454 VIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRM--LG 511
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
C PD T T LIS K GM
Sbjct: 512 TGCAPDSITMTSLISCLLKAGM 533
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI G+ G + A + M C PD+ + +I+ CR G ++ L
Sbjct: 345 TFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWH-- 402
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
EL P+ YT+ IL ++ CK
Sbjct: 403 ELNARNLSPNEYTFAILTNALCK 425
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTT--STVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F + + + L+EM ++G V T S + L+K EE +NEAL F MK+ +
Sbjct: 681 FGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVK--AEE--INEALICFQSMKEMK 736
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+ Y Y+++IN LCRV +NKA ++M+ G P+V TYT +I+ K G
Sbjct: 737 CSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGL--VPNVVTYTTMIAGLAKVG 790
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M VF G+ KG F +G G L + + LI L + G E + F+ MKQ
Sbjct: 538 MDCVFKAGDVEKGRAIF---EDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQ 594
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
D AYN V++ C+ G +KA +LE+M++ R PP V TY +I K
Sbjct: 595 QGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVK--RVPPTVATYGSIIDGLAK 648
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + NV W F E+ + G + T +I VL + G ++EA F +M+ R
Sbjct: 262 FGKAGNVDMAWKFFHEL--KSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAV 319
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P YAYN +I G F A LL+Q++ G C P V ++ +++ K
Sbjct: 320 PCAYAYNTMIMGYGSAGQFENAYKLLDQLKERG--CIPSVVSFNSILTCLGK 369
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ LI G+ G ++EA M + P+VY +N +++AL + N+A + M+
Sbjct: 675 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMK- 733
Query: 233 PGFRCPPDVYTYTILISSYCK 253
+C P+ YTY+ILI+ C+
Sbjct: 734 -EMKCSPNTYTYSILINGLCR 753
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L++M G V T L++ L EG V ALA +K PD+ YNV I+
Sbjct: 203 ELLRQMQEVGYE--VGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCID 260
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ GN + A +++ G + PD +YT +I CK G
Sbjct: 261 CFGKAGNVDMAWKFFHELKSQGLK--PDDVSYTSMIWVLCKAG 301
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTT--STVTCLIKVLGEEGLVNEALATFYRM 195
M + + + + L ++ RG V + S +TCL G++ V+EAL F M
Sbjct: 328 MIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCL----GKKRKVDEALTLFEAM 383
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
K+ P+ YN++I+ LC G +A + ++ME G P++ T I++ CK
Sbjct: 384 KK-DAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLF--PNLLTVNIMVDRLCK 438
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
I G+ G V+ A F+ +K +PD +Y +I LC+ G ++A L QME
Sbjct: 259 IDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETE-- 316
Query: 236 RCPPDVYTYTILISSYCKYG 255
R P Y Y +I Y G
Sbjct: 317 RAVPCAYAYNTMIMGYGSAG 336
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI+ G + F M + C+PD+ N ++ + + G+ K R + E ++
Sbjct: 500 TSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKG 559
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
GF PDV +Y+ILI K G
Sbjct: 560 YGFL--PDVRSYSILIHGLTKAG 580
>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 4/143 (2%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
N F+ W + +FH+ CK M ++ ++ +W ++EM R+ N EL+
Sbjct: 112 NLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEM-RKTNPELIEPELF 170
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
L++ +V +A+ M ++ PD Y + +++ALC+ G+ +A + E M
Sbjct: 171 VVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMRE 230
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+ PP++ +T L+ +C+ G
Sbjct: 231 ---KFPPNLRYFTSLLYGWCREG 250
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN-FNKARFLLEQME 231
T L+ G + +A M++ P+V Y V+I ALCR ++A + +ME
Sbjct: 275 TNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEME 334
Query: 232 LPGFRCPPDVYTYTILISSYCKYGM 256
G C D+ TYT LIS +CK+GM
Sbjct: 335 RYG--CEADIVTYTALISGFCKWGM 357
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG--LVNEALATFYRMKQFR 199
F + + + L +M ++G V S VT + ++ E E L +MK+
Sbjct: 352 FCKWGMIDKGYSVLDDMRKKG----VMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRG 407
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C PD+ YNVVI C++G +A L +ME G P V T+ I+I+ + G
Sbjct: 408 CHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGL--SPGVDTFVIMINGFTSQG 461
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 36/148 (24%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE-EGLVNEALATFYRMKQFRC 200
+A + +D + +M +RG V TV LI+ L E ++EA+ F M+++ C
Sbjct: 281 YAHAGKMADAYDLMNDMRKRGFEPNVNCYTV--LIQALCRTEKRMDEAMRVFVEMERYGC 338
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR------------------------ 236
D+ Y +I+ C+ G +K +L+ M G
Sbjct: 339 EADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLE 398
Query: 237 ---------CPPDVYTYTILISSYCKYG 255
C PD+ Y ++I CK G
Sbjct: 399 LIEKMKRRGCHPDLLIYNVVIRLACKLG 426
>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
Length = 651
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 11/122 (9%)
Query: 141 VFARGNNVKGLWD----FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
+ RG + G D L+EM G G V +T L+K L + G V EAL F M
Sbjct: 14 ILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTT---LMKGLCDAGRVVEALEHFRAM 70
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ C PDV Y +++ALC+ G F++A+ +L +M G C PD T++ LI CK+G
Sbjct: 71 AK-DCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARG--CAPDTVTFSTLIDGLCKFG 127
Query: 256 MQ 257
+
Sbjct: 128 SE 129
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ N V L++M G + +VT STV I L ++G V++A F M++ C
Sbjct: 229 LCKANRVGEAQQLLEKMVTGGCSPNVVTYSTV---INGLCKQGQVDDAYELFQLMERRNC 285
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+V +N++I+ LC+ +AR L +M G C PD+ TY LI CK
Sbjct: 286 PPNVVTHNILIDGLCKAKRIEEARQLYHRMRETG--CAPDIITYNSLIDGLCK 336
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 113 NKATEFYHWVERFFHFFHN-EVTCKEMGIVFARG------------------NNVKGLWD 153
N F ++R + +++ E+ K +G+V A+G ++ +
Sbjct: 146 NSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYK 205
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+ M +G V T T+ LI L + V EA +M C P+V Y+ VIN
Sbjct: 206 LLEVMIEKGCVPNVFTFTI--LITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVING 263
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC+ G + A L + ME CPP+V T+ ILI CK
Sbjct: 264 LCKQGQVDDAYELFQLMERR--NCPPNVVTHNILIDGLCK 301
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M + C P+V+ + ++I LC+ +A+ LLE+M G C P+V TY+ +I+ CK
Sbjct: 210 MIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGG--CSPNVVTYSTVINGLCKQ 267
Query: 255 G 255
G
Sbjct: 268 G 268
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L +MS RG V S+ L+ L +EA F M P++ NVVI+
Sbjct: 525 LLHKMSERGFAAAV--SSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISW 582
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC + A L+++M G C PD+ T LI YCK G
Sbjct: 583 LCSAAKVDDAYELVQRMSKLG--CCPDIETCNTLIGGYCKSG 622
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
STV +I L V++A RM + C PD+ N +I C+ G + AR LLE+
Sbjct: 574 STVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEE 633
Query: 230 MELPGFRCPPDVYTYTIL 247
M G P+ T+ +L
Sbjct: 634 MTEAGLE--PNDTTHDLL 649
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ V ++ + M RR V T + LI L + + EA ++RM++ C
Sbjct: 264 LCKQGQVDDAYELFQLMERRNCPPNVVTHNI--LIDGLCKAKRIEEARQLYHRMRETGCA 321
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ YN +I+ LC+ ++A L + + G + TY+ L Y G
Sbjct: 322 PDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVS-AANAVTYSTLFHGYAALG 374
>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g16010-like [Cucumis sativus]
Length = 637
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 3/146 (2%)
Query: 108 VTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV 167
+ + I +F+ W + HF H+ T + V +W +++M R V
Sbjct: 100 IDVEIRAKIQFFKWAGKRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCS--V 157
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+ + ++K+LG+ +VN+AL+ FY++K +C P YN +I L G+ K L
Sbjct: 158 GPAEWSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELY 217
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++ G C PD TY+ LIS++ K
Sbjct: 218 NEICSEG-NCSPDTITYSALISAFGK 242
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N V+ ++EM +G G T T T LIK LG+ G V++A + F+ M + C+PDV
Sbjct: 279 NKVEAALRLVEEM--KGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVV 336
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
N +IN L R G A L +M+ +C P+V TY +I +
Sbjct: 337 LINNLINILGRAGRLEDALKLFGKMD--SLQCAPNVVTYNTVIKA 379
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK G G +++A+ F ++ C PDVY YN +++ + R G ++A L+ M G
Sbjct: 482 MIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENG 541
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD+ ++ I+++ K G
Sbjct: 542 --CTPDIKSHNIILNGLAKTG 560
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV-GNFNKARFLLEQMELP 233
LI +LG G + +AL F +M +C P+V YN VI A+ ++A E+M+
Sbjct: 341 LINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKAN 400
Query: 234 GFRCPPDVYTYTILISSYCK 253
G P +TY ILI +CK
Sbjct: 401 GI--APSSFTYAILIDGFCK 418
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 150 GLWDFLKEMSR--RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G+ D + R R NG + ++ L + G A+ F +MK+ PD +Y
Sbjct: 525 GMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSY 584
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N +++ L R G F A L+ +M+L GF D TY+ ++ + K
Sbjct: 585 NTILSCLSRAGMFEMAAKLMREMKLKGFEY--DSITYSSILEAVGK 628
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ + G+++EA + M++ C PD+ ++N+++N L + G +A + +M
Sbjct: 513 TYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKM 572
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
+ PD +Y ++S + GM
Sbjct: 573 KESEIM--PDAVSYNTILSCLSRAGM 596
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC-LIKVLGEEGLVNEALATFYRMKQFRC 200
F + N V+ L+EM +G C LI LG A F +K+
Sbjct: 416 FCKTNRVEKALLLLEEMDEKG---FPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCG 472
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
R Y V+I G + A L + E G C PDVYTY L+S + GM
Sbjct: 473 RSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLG--CSPDVYTYNALMSGMIRAGM 526
>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Cucumis sativus]
Length = 637
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 3/146 (2%)
Query: 108 VTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV 167
+ + I +F+ W + HF H+ T + V +W +++M R V
Sbjct: 100 IDVEIRAKIQFFKWAGKRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCS--V 157
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+ + ++K+LG+ +VN+AL+ FY++K +C P YN +I L G+ K L
Sbjct: 158 GPAEWSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELY 217
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++ G C PD TY+ LIS++ K
Sbjct: 218 NEICSEG-NCSPDTITYSALISAFGK 242
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N V+ ++EM +G G T T T LIK LG+ G V++A + F+ M + C+PDV
Sbjct: 279 NKVEAALRLVEEM--KGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVV 336
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
N +IN L R G A L +M+ +C P+V TY +I +
Sbjct: 337 LINNLINILGRAGRLEDALKLFGKMD--SLQCAPNVVTYNTVIKA 379
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK G G +++A+ F MK+ C PDVY YN +++ + R G ++A L+ M G
Sbjct: 482 MIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENG 541
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD+ ++ I+++ K G
Sbjct: 542 --CTPDIKSHNIILNGLAKTG 560
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV-GNFNKARFLLEQMELP 233
LI +LG G + +AL F +M +C P+V YN VI A+ ++A E+M+
Sbjct: 341 LINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKAN 400
Query: 234 GFRCPPDVYTYTILISSYCK 253
G P +TY ILI +CK
Sbjct: 401 GI--APSSFTYAILIDGFCK 418
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 150 GLWDFLKEMSR--RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G+ D + R R NG + ++ L + G A+ F +MK+ PD +Y
Sbjct: 525 GMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSY 584
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N +++ L R G F A L+ +M+L GF D TY+ ++ + K
Sbjct: 585 NTILSCLSRAGMFEMAAKLMREMKLKGFEY--DSITYSSILEAVGK 628
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D EM + G V T L+ + G+++EA + M++ C PD+ ++N+++N
Sbjct: 497 DLFCEMKKLGCSPDVYT--YNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILN 554
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L + G +A + +M+ PD +Y ++S + GM
Sbjct: 555 GLAKTGGPKRAIEMFTKMKESEIM--PDAVSYNTILSCLSRAGM 596
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC-LIKVLGEEGLVNEALATFYRMKQFRC 200
F + N V+ L+EM +G C LI LG A F +K+
Sbjct: 416 FCKTNRVEKALLLLEEMDEKG---FPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCG 472
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
R Y V+I G + A L +M+ G C PDVYTY L+S + GM
Sbjct: 473 RSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLG--CSPDVYTYNALMSGMIRAGM 526
>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
Length = 577
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG--ELVTTSTVTCLIKVLGEEGLVNEALA 190
VT M ++ + K M RG E+V ++ LI L + ++ AL
Sbjct: 127 VTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSA----LIHGLCKARKMDCALE 182
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+MK+ C PD YNV+I+ LC+ G+ AR ++M G C PDVYTY ILIS
Sbjct: 183 MLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAG--CKPDVYTYNILISG 240
Query: 251 YCKYG 255
+CK G
Sbjct: 241 FCKAG 245
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG--ELVTTSTVTCLIKVLGEEGLVNEALA 190
VT M ++ + K M RG E+V ++ LI L + ++ AL
Sbjct: 408 VTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSA----LIHGLCKARKMDCALE 463
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+MK+ C PD YN++I+ LC+ G+ AR ++M G C PDVYTY ILIS
Sbjct: 464 MLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAG--CKPDVYTYNILISG 521
Query: 251 YCKYG 255
+CK G
Sbjct: 522 FCKAG 526
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
D EM + T T+T LI L + G V A A F M + C+PDVY YN+
Sbjct: 458 MDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNI 517
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+I+ C+ GN + A + + M RC +V TY LIS CK
Sbjct: 518 LISGFCKAGNTDAACGVFDDM--SSSRCSANVVTYGALISGLCK 559
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
D EM + T T+T LI L + G V A A F M + C+PDVY YN+
Sbjct: 177 MDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNI 236
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
+I+ C+ GN + A L Q E C D++TYT ++
Sbjct: 237 LISGFCKAGNTDAASHSLAQ-ETTINGCTIDIHTYTAIVD 275
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + T T ++ L + + EA+A ++ C P + YN ++N LC++G +
Sbjct: 261 NGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEE 320
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A LL ++ G C PDV TYT LI K
Sbjct: 321 AIDLLRKIVDNG--CTPDVVTYTSLIDGLGK 349
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+ EA+A ++ C P + YN ++N LC++G +A LL ++ G C PDV TY
Sbjct: 2 IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG--CTPDVVTY 59
Query: 245 TILISSYCK 253
T LI K
Sbjct: 60 TSLIDGLGK 68
>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 647
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G V + LI LG+ G V+EA FY M + C PD Y YN +I+AL + G +
Sbjct: 417 GKGVAVNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYNALIDALAKCGKID 476
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISS 250
+A L ++ME+ G C VYTYTILI+
Sbjct: 477 EALALSKRMEVDG--CDQTVYTYTILITG 503
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
Query: 115 ATEFYHWVERFFHFFHN-EVTCKEMGIVFARG--NNVKGLWDFLKEMSRRGNGELVTTST 171
A F+ W + + HN E + ++ G ++VK ++ KEM G ++T +
Sbjct: 127 AIRFFTWAGKQKKYTHNLECYVSLIDVLATNGVLDSVKSVFSKFKEM-----GLIMTVYS 181
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
LIK G G+V E L + RMK+ P +++YN ++N L A + E ME
Sbjct: 182 SNSLIKSFGNLGMVEEVLWVWRRMKENGIEPSLFSYNFLVNGLVNSKFIESAERVFEVME 241
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
+ PDV TY +I YC+ G
Sbjct: 242 --NGKIGPDVVTYNTMIKGYCEVG 263
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 58/154 (37%), Gaps = 42/154 (27%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+G + G V+G F +S+ G + T LI + G + EA+ F RMK+
Sbjct: 326 IGGLCKDGKRVEGYTVFENMISK---GCKANVAIYTALIDSNAKCGNMGEAMLLFKRMKK 382
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR--------------------- 236
PD Y V++N+LC+ G ++A LE ME +
Sbjct: 383 EGLEPDEVTYGVIVNSLCKSGRLDEA---LEYMEFCSGKGVAVNAMFYSSLIDGLGKSGR 439
Query: 237 ---------------CPPDVYTYTILISSYCKYG 255
CPPD Y Y LI + K G
Sbjct: 440 VDEAERIFYEMVKKGCPPDSYCYNALIDALAKCG 473
>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
Length = 1393
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Query: 125 FFHFFHNEVT-CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG 183
F F ++VT C + + A G+ + L F + ++ ++V ++ L+K L +G
Sbjct: 318 FKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNS---LVKGLCLQG 374
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
L+ AL M + C PD+ YN+VIN LC++GN + A ++ + G+ PDV+T
Sbjct: 375 LILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYL--PDVFT 432
Query: 244 YTILISSYCK 253
+ LI YCK
Sbjct: 433 FNTLIDGYCK 442
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++ AL RM ++ PD YN V+N LC+ G N+ ++M L G C P+ TY
Sbjct: 446 LDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKG--CHPNPITY 503
Query: 245 TILISSYCK 253
ILI ++C+
Sbjct: 504 NILIENFCR 512
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 16/172 (9%)
Query: 95 LVLGPAAYRNPQKVTL-----GINKAT---EFYHWVERFFH--FFHNEVTCKEMGIVFAR 144
LV G AY P VT G+ K + E H++ R + ++ T + + +
Sbjct: 243 LVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCK 302
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTC-LIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ V+ + LK+ +G V C LI L EG V AL F + +PD
Sbjct: 303 ISMVQEATELLKDAVFKG---FVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPD 359
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ YN ++ LC G A ++ +M G C PD+ TY I+I+ CK G
Sbjct: 360 IVVYNSLVKGLCLQGLILHALQVMNEMAEEG--CHPDIQTYNIVINGLCKMG 409
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
I+ G + +A+ F RM F C P AYN +++AL ++A + +M G
Sbjct: 57 IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 116
Query: 236 RCPPDVYTYTILISSYC 252
PD++T+TI + S+C
Sbjct: 117 S--PDLHTHTIRLRSFC 131
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T I+ L E G + EA+ M+ + PDV YN +I LC+ +A L +M
Sbjct: 223 TYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRM 281
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
G C PD +TY +I YCK M
Sbjct: 282 MNQG--CLPDDFTYNTIIDGYCKISM 305
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T ++ L + G VNE TF M C P+ YN++I CR +A ++
Sbjct: 465 TITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIV 524
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M G PD ++ LI +C+ G
Sbjct: 525 KMSQEGLH--PDAVSFNTLIYGFCRNG 549
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI+ + EA +M Q PD ++N +I CR G+ A L +++
Sbjct: 502 TYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKL 561
Query: 231 ELPGFRCPPDVYTYTILISSY 251
E G+ D T+ LI ++
Sbjct: 562 EEKGYSATAD--TFNTLIGAF 580
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+ + RG V TV C L G ++A F +M P++ A+N V++A
Sbjct: 142 LLRALPHRG---AVAYCTVVC---GLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHA 195
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G+ +A LL ++ G +++TY I I C+ G
Sbjct: 196 LCKRGDVLEAGLLLGKVIQRGMSI--NLFTYNIWIRGLCEAG 235
>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
Length = 1380
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Query: 125 FFHFFHNEVT-CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG 183
F F ++VT C + + A G+ + L F + ++ ++V ++ L+K L +G
Sbjct: 319 FKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNS---LVKGLCLQG 375
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
L+ AL M + C PD+ YN+VIN LC++GN + A ++ + G+ PDV+T
Sbjct: 376 LILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYL--PDVFT 433
Query: 244 YTILISSYCK 253
+ LI YCK
Sbjct: 434 FNTLIDGYCK 443
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++ AL RM ++ PD YN V+N LC+ G N+ ++M L G C P+ TY
Sbjct: 447 LDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKG--CHPNPITY 504
Query: 245 TILISSYCK 253
ILI ++C+
Sbjct: 505 NILIENFCR 513
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 16/172 (9%)
Query: 95 LVLGPAAYRNPQKVTL-----GINKAT---EFYHWVERFFH--FFHNEVTCKEMGIVFAR 144
LV G AY P VT G+ K + E H++ R + ++ T + + +
Sbjct: 244 LVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCK 303
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTC-LIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ V+ + LK+ +G V C LI L EG V AL F + +PD
Sbjct: 304 ISMVQEATELLKDAVFKG---FVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPD 360
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ YN ++ LC G A ++ +M G C PD+ TY I+I+ CK G
Sbjct: 361 IVVYNSLVKGLCLQGLILHALQVMNEMAEEG--CHPDIQTYNIVINGLCKMG 410
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T I+ L E G + EA+ M+ + PDV YN +I LC+ +A L +M
Sbjct: 224 TYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRM 282
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
G C PD +TY +I YCK M
Sbjct: 283 MNQG--CLPDDFTYNTIIDGYCKISM 306
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
I+ G + +A+ F RM F C P AYN +++AL ++A + +M G
Sbjct: 58 IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 117
Query: 236 RCPPDVYTYTILISSYC 252
PD++T+TI + S+C
Sbjct: 118 S--PDLHTHTIRLRSFC 132
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T ++ L + G VNE TF M C P+ YN++I CR +A ++
Sbjct: 466 TITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIV 525
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M G PD ++ LI +C+ G
Sbjct: 526 KMSQEGLH--PDAVSFNTLIYGFCRNG 550
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI+ + EA +M Q PD ++N +I CR G+ A L +++
Sbjct: 503 TYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKL 562
Query: 231 ELPGFRCPPDVYTYTILISSY 251
E G+ D T+ LI ++
Sbjct: 563 EEKGYSATAD--TFNTLIGAF 581
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+ + RG V TV C L G ++A F +M P++ A+N V++A
Sbjct: 143 LLRALPHRG---AVAYCTVVC---GLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHA 196
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G+ +A LL ++ G +++TY I I C+ G
Sbjct: 197 LCKRGDVLEAGLLLGKVIQRGMSI--NLFTYNIWIRGLCEAG 236
>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
Length = 664
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 3/144 (2%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL-VTTSTV 172
KA EF++W R F H+ + M + R N+ +FL + RR NG + +
Sbjct: 42 KAFEFFNWASRN-GFAHDSRSYFMMLDILGRNGNLNIARNFLFSIERRSNGSVKIEDRFC 100
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
L++ G GL NEA+ F MK P V +N ++ L + G N A + ++M
Sbjct: 101 NTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEM-C 159
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
+ PD YT+ ILI +CK M
Sbjct: 160 GTYGVTPDTYTFNILIRGFCKNSM 183
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI+ + +V+E F M +F C PDV YN +++ LCR G A +++
Sbjct: 168 TYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVK 227
Query: 229 QMELPGFRCPPDVYTYTILISSYC 252
M PDV TYT L+ YC
Sbjct: 228 GMVKKMKDLSPDVVTYTTLVRGYC 251
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 148 VKGL-----WDFLKEM---SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+KGL +D +KE+ + G G + T T L+ + G +EAL F +MK+ +
Sbjct: 282 IKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELK 341
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQME-----LPGFRCPPDVYTYTILISSYCKY 254
+PD Y+V+I LC+ G+F +A L +++ L C P V Y + CK
Sbjct: 342 VQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKN 401
Query: 255 G 255
G
Sbjct: 402 G 402
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N VKG+ +K++S ++VT +T L++ + ++EAL F M +P+
Sbjct: 224 NVVKGMVKKMKDLS----PDVVTYTT---LVRGYCMKQEIDEALVVFEEMVSRGLKPNDI 276
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN +I LC V F+K + +L + G PD TY L+++ C G
Sbjct: 277 TYNTLIKGLCEVQKFDKIKEILGG-AVGGRGFVPDTCTYNTLMNAQCDAG 325
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRM-------KQFRCRPDVYAYNVVINALCRVGNFN 221
++T + LI+ L + G A F ++ + C P V AYN + + LC+ G +
Sbjct: 346 SATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTH 405
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
KA + Q+ G + PP +Y LI +CK G
Sbjct: 406 KAERVFRQLMKKGTQDPP---SYKTLIIGHCKEG 436
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTT--STVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F + + + L+EM ++G V T S + L+K EE ++EAL F MK+ +
Sbjct: 675 FGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKT--EE--IDEALICFQSMKEMK 730
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+ Y Y+++IN LCRV +NKA ++M+ G P+V TYT +IS K G
Sbjct: 731 CSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGL--IPNVVTYTTMISGLAKVG 784
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 152 WDFLKEMSRRGNGELVTT--STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
+ L+ + RG V + S +TCL G++ V+EAL F MK+ +P++ YN+
Sbjct: 336 YKLLERLRERGCIPSVVSFNSILTCL----GKKRKVDEALTLFDVMKK-DAKPNISTYNI 390
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+I+ LC G N+A + ++MEL G P++ + I++ CK
Sbjct: 391 IIDMLCMAGRVNEAYKIRDEMELAGLF--PNLLSVNIMVDRLCK 432
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L++M + G V+ T L++ L EG + ALA +K PD+ YNV I+
Sbjct: 197 ELLRQM--QDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCID 254
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G+ + A +++ G R PD +YT ++ CK G
Sbjct: 255 CFGKAGSVDMAWKFFHELKAHGLR--PDDVSYTSMVWVLCKAG 295
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + +V W F E+ + +G + T ++ VL + G + EA F +M+ R
Sbjct: 256 FGKAGSVDMAWKFFHEL--KAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDV 313
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P YAYN +I F+ A LLE++ G C P V ++ +++ K
Sbjct: 314 PCAYAYNTMIMGYGSAERFDDAYKLLERLRERG--CIPSVVSFNSILTCLGK 363
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 16/112 (14%)
Query: 154 FLKEMSRRGNGE----LVTTSTVTCL----------IKVLGEEGLVNEALATFYRMKQFR 199
++ ++R G E LV +CL I G+ G V+ A F+ +K
Sbjct: 217 LVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHG 276
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
RPD +Y ++ LC+ G +A L QME R P Y Y +I Y
Sbjct: 277 LRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAE--RDVPCAYAYNTMIMGY 326
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M VF G KG F ++M + G L + + LI L + G E F M Q
Sbjct: 532 MDCVFKAGEVEKGRAIF-EDM--KSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQ 588
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
D AYN V++ LC+ G +KA +LE+M++ P V TY ++ K
Sbjct: 589 QGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVH--PTVATYGSIVDGLAK 642
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
ST +I +L G VNEA M+ P++ + N++++ LC+ +A + E
Sbjct: 386 STYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFES 445
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
G C P+ TY LI K G
Sbjct: 446 ASERG--CNPNSVTYCSLIDGLGKKG 469
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
+++ L L+EMS G G + L+ L + +A M+ + RP
Sbjct: 120 HDLAALEKVLEEMSHLGYG--LPNPACAALVATLVRSRRLEDAFRVIGAMRHLKFRPPFS 177
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
AY V+I AL +A LL QM+ G+ V +T L+ + + G
Sbjct: 178 AYTVLIGALAEARQPERALELLRQMQDVGYEV--SVPLFTTLVRALAREG 225
>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + +WD + EM RG +++T S+ LI L + G ++ A+A F +MK
Sbjct: 384 LCKSGRISYVWDLIDEMRDRGQPADVITYSS---LIDGLCKNGHLDRAIALFNKMKDQEI 440
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
RP+++ + ++++ LC+ G A+ + + + G+ +VYTY ++I+ +CK G+
Sbjct: 441 RPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHL--NVYTYNVMINGHCKQGL 494
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L +EG V EA + M + +PDV Y+ +++ V KA+ + M
Sbjct: 271 TYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAM 330
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
L G PDV+TYTILI+ +CK M
Sbjct: 331 SLMGV--TPDVHTYTILINGFCKNKM 354
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 160 RRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
R+ +G L V +I + + LV+EA F M DV YN +I C V
Sbjct: 188 RKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIV 247
Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
G +A LL +M L P+VYTY IL+ + CK G
Sbjct: 248 GKLKEAIGLLNEMVLKTIN--PNVYTYNILVDALCKEG 283
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + +V+EAL F M Q P + Y+ +I+ LC+ G + L+++M
Sbjct: 341 TYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEM 400
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P DV TY+ LI CK G
Sbjct: 401 RDRG--QPADVITYSSLIDGLCKNG 423
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 152 WDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+ EM+ +G + ++VT +T+ ++G+ + EA+ M P+VY YN++
Sbjct: 219 YGLFSEMAVKGISADVVTYNTLIYGFCIVGK---LKEAIGLLNEMVLKTINPNVYTYNIL 275
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
++ALC+ G +A+ +L M + PDV TY+ L+ Y
Sbjct: 276 VDALCKEGKVKEAKSVLAVMLKACVK--PDVITYSTLMDGY 314
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++A++ F RM R P + +N ++++ ++ +++ A L ++EL G + PD+ T
Sbjct: 40 VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQ--PDLITL 97
Query: 245 TILISSYCKYGMQT 258
ILI+ +C G T
Sbjct: 98 NILINCFCHMGQIT 111
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T+ LIK L +G V +AL ++ + + +Y +IN +C++G+ A L
Sbjct: 129 TVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLR 188
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
+++ G PDV Y +I + CKY +
Sbjct: 189 KID--GRLTKPDVVMYNTIIDAMCKYQL 214
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V +A F M PDV+ Y ++IN C+ ++A L ++M P + TY
Sbjct: 320 VKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNM--VPGIVTY 377
Query: 245 TILISSYCKYG 255
+ LI CK G
Sbjct: 378 SSLIDGLCKSG 388
>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g09680-like [Glycine max]
Length = 509
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G + T T LI + G V+ AL F M RPD+ YN +IN LC+VG+
Sbjct: 240 GKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLK 299
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+AR L+ +M G R PD T+T LI CKYG
Sbjct: 300 EARRLVNEMSASGLR--PDRITFTTLIDGCCKYG 331
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + G + AL RM + D A+ V+I+ LCR G + A +L M
Sbjct: 319 TFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDM 378
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF+ PD TYT+++ +CK G
Sbjct: 379 LSAGFK--PDDPTYTMVVDCFCKKG 401
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T + LI + G V E M+ R PDV+ ++ +IN LC+ G ++ L
Sbjct: 176 TVVSFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLF 235
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++M G P+ T+T+LI CK G
Sbjct: 236 DEMCGKGL--VPNGVTFTVLIDGQCKGG 261
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
E+ RR E + V T LI L +G V++A M +PD Y +V++
Sbjct: 338 EIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCF 397
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ GN LL++M+ G P V TY L++ CK G
Sbjct: 398 CKKGNVXMGFKLLKEMQSDGH--VPGVVTYNALMNGLCKQG 436
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T ++ ++G V M+ P V YN ++N LC+ G A+ LL+ M
Sbjct: 389 TYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAM 448
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P+ TY IL+ + K+G
Sbjct: 449 LNVGV--APNDITYNILLEGHSKHG 471
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ + +NV+++ C+VG AR + +++ G R P V ++ LIS CK G
Sbjct: 140 PNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLR--PTVVSFNTLISGCCKAG 191
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G V A F + + RP V ++N +I+ C+ G + L ME R PDV+
Sbjct: 156 GGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVME--SERVCPDVF 213
Query: 243 TYTILISSYCKYG 255
T++ LI+ CK G
Sbjct: 214 TFSALINGLCKEG 226
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTT--STVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F + + + L+EM ++G V T S + L+K EE +NEAL F MK+ +
Sbjct: 544 FGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVK--AEE--INEALVCFQSMKEMK 599
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+ Y Y+++IN LCRV +NKA + M+ G P+V TYT +IS K G
Sbjct: 600 CPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGL--VPNVVTYTTMISGLAKVG 653
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ LI G+ G ++EA M + P+VY +N +++AL + N+A + M+
Sbjct: 538 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMK- 596
Query: 233 PGFRCPPDVYTYTILISSYCK 253
+CPP+ YTY+ILI+ C+
Sbjct: 597 -EMKCPPNTYTYSILINGLCR 616
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L++M G V T L++ L EG V +ALA +K PD+ YNV I+
Sbjct: 66 ELLRQMQEVGYE--VGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCID 123
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ GN + A +++ G + PD +YT +I CK G
Sbjct: 124 CFGKAGNVDMACKFFHELKAQGLK--PDDVSYTSMIWVLCKAG 164
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M VF G KG F R G L + + LI L + G E F+ MKQ
Sbjct: 401 MDCVFKAGEVEKGRMIF---EDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQ 457
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC-PPDVYTYTILISSYCK 253
D AYN V++ C+ G +KA +LE+M+ +C P V TY ++ K
Sbjct: 458 QGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKE---KCVQPTVATYGAIVDGLAK 511
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 152 WDFLKEMSRRGNGELVTT--STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
+ L+ + RG V + S +TCL G++ V+EAL+ F MK+ P+ YN+
Sbjct: 205 YKLLERLRERGCIPSVVSFNSILTCL----GKKRKVDEALSLFEVMKK-DAEPNSSTYNI 259
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+I+ LC G +A +L++ME P++ T I++ CK
Sbjct: 260 IIDMLCLGGRVEEAYRILDEMEHASLF--PNLLTVNIMVDRLCK 301
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + NV F E+ + G + T +I VL + G + EA F +M+ R
Sbjct: 125 FGKAGNVDMACKFFHEL--KAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSV 182
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P YAYN +I G F A LLE++ G C P V ++ +++ K
Sbjct: 183 PCAYAYNTMIMGYGSAGRFEDAYKLLERLRERG--CIPSVVSFNSILTCLGK 232
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
I G+ G V+ A F+ +K +PD +Y +I LC+ G +A L QME
Sbjct: 122 IDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAE-- 179
Query: 236 RCPPDVYTYTILISSYCKYG 255
R P Y Y +I Y G
Sbjct: 180 RSVPCAYAYNTMIMGYGSAG 199
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 85/219 (38%), Gaps = 63/219 (28%)
Query: 81 RILKKEAD------NIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFH--FFHNE 132
++KK+A+ NI ++L LG + E Y ++ H F N
Sbjct: 244 EVMKKDAEPNSSTYNIIIDMLCLG--------------GRVEEAYRILDEMEHASLFPNL 289
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+T M + ++ + + S+RG N + VT + LI LG++G V+EA
Sbjct: 290 LTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCS---LIDGLGKKGQVDEAYRL 346
Query: 192 FYRM-----------------------------KQFR------CRPDVYAYNVVINALCR 216
F +M K F+ C+PD+ N ++ + +
Sbjct: 347 FEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFK 406
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
G K R + E + GF PDV +Y+ILI K G
Sbjct: 407 AGEVEKGRMIFEDIRSYGFL--PDVRSYSILIHGLTKAG 443
>gi|414883744|tpg|DAA59758.1| TPA: hypothetical protein ZEAMMB73_211431 [Zea mays]
Length = 732
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 83/207 (40%), Gaps = 23/207 (11%)
Query: 67 GRQTGFRHRTP--------LKQRILKKEADNIANNVLVLG-PAAYRNPQKVTL-----GI 112
GRQ GFRH P L L AD + + + G P ++ PQ L
Sbjct: 155 GRQKGFRHCFPAFHALASLLSAAGLPAAADQLPDLMRAHGRPISH--PQLTLLVRLHTAA 212
Query: 113 NKATEFYHWVERFFHFFHNEV---TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTT 169
+ H + RF H F + C + A +V+ EMS G + T
Sbjct: 213 RRPLRALHALRRFRHEFDVQPQVHACNRVLGALAAAGHVEDALKLFDEMSEGGVQPIPVT 272
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+ +++ L G+V+ L RM+ CRPDV+ Y ++ + R G + + ++
Sbjct: 273 FAI--MVRALAHAGMVDRLLEMIGRMRNEVCRPDVFVYTALVKTMVRRGYMDGCMRVWDE 330
Query: 230 MELPGFRCPPDVYTYTILISSYCKYGM 256
ME G PD Y ++ CK GM
Sbjct: 331 MEKDGVE--PDTMAYATMVGGLCKAGM 355
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
+ T + +I +EG V EA + + M + P + AY V++ LC++G N A L++
Sbjct: 550 SCTYSHMIPCFVDEGNVKEACSCYNTMMKENWIPSMSAYCVLVKGLCKMGEINTAISLVK 609
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
L P + YT+ I C+
Sbjct: 610 DC-LGNIENGPAEFKYTLTILEACR 633
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTT--STVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F + + + L+EM ++G V T S + L+K EE +NEAL F MK+ +
Sbjct: 412 FGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVK--AEE--INEALVCFQSMKEMK 467
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+ Y Y+++IN LCRV +NKA + M+ G P+V TYT +IS K G
Sbjct: 468 CPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGL--VPNVVTYTTMISGLAKVG 521
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ LI G+ G ++EA M + P+VY +N +++AL + N+A + M+
Sbjct: 406 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMK- 464
Query: 233 PGFRCPPDVYTYTILISSYCK 253
+CPP+ YTY+ILI+ C+
Sbjct: 465 -EMKCPPNTYTYSILINGLCR 484
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M VF G KG F R G L + + LI L + G E F+ MKQ
Sbjct: 269 MDCVFKAGEVEKGRMIF---EDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQ 325
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC-PPDVYTYTILISSYCK 253
D AYN V++ C+ G +KA +LE+M+ +C P V TY ++ K
Sbjct: 326 QGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKE---KCVQPTVATYGAIVDGLAK 379
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 153 DFLKEMSR-RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
D K + R R G + + + ++ LG++ V+EAL+ F MK+ P+ YN++I
Sbjct: 71 DAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK-DAEPNSSTYNIII 129
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ LC G +A +L++ME P++ T I++ CK
Sbjct: 130 DMLCLGGRVEEAYRILDEMEHASLF--PNLLTVNIMVDRLCK 169
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W F E+ + G + T +I VL + G + EA F +M+ R P YAYN +I
Sbjct: 3 WKFFHEL--KAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMI 60
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
G F A LLE++ G C P V ++ +++
Sbjct: 61 MGYGSAGRFEDAYKLLERLRERG--CIPSVVSFNSILT 96
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 85/219 (38%), Gaps = 63/219 (28%)
Query: 81 RILKKEAD------NIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFH--FFHNE 132
++KK+A+ NI ++L LG + E Y ++ H F N
Sbjct: 112 EVMKKDAEPNSSTYNIIIDMLCLG--------------GRVEEAYRILDEMEHASLFPNL 157
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+T M + ++ + + S+RG N + VT + LI LG++G V+EA
Sbjct: 158 LTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCS---LIDGLGKKGQVDEAYRL 214
Query: 192 FYRM-----------------------------KQFR------CRPDVYAYNVVINALCR 216
F +M K F+ C+PD+ N ++ + +
Sbjct: 215 FEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFK 274
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
G K R + E + GF PDV +Y+ILI K G
Sbjct: 275 AGEVEKGRMIFEDIRSYGFL--PDVRSYSILIHGLTKAG 311
>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Glycine max]
Length = 631
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 3/159 (1%)
Query: 95 LVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDF 154
L + P R K+ + ++ +F+ W + +F H+ T + +W
Sbjct: 81 LKVDPRLVREILKIDVEVSVKIQFFKWAGKRRNFEHDSTTYMALIRCLDEHRMFGEVWKT 140
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
+++M + + + ++ ++++LG+ +VN AL+ FY++K +CRP YN +I L
Sbjct: 141 IQDMVKGSCA--MAPAELSEIVRILGKAKMVNRALSVFYQVKGRKCRPTASTYNSIILML 198
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ G+ K L +M C PD TY+ LIS++ K
Sbjct: 199 MQEGHHEKVHELYNEM-CSEVHCFPDTVTYSALISAFAK 236
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
MGI F G V+ +KEM R L+T T T LI+ LG+ G V +A T+ M +
Sbjct: 266 MGIYFKVGK-VEEALGLVKEM--RARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLK 322
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
C+PDV N +IN L R + A L ++M+L C P+V TY +I S
Sbjct: 323 DGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKL--LNCAPNVVTYNTIIKS 373
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK G+ G +NEA+ F MK+ C PDVYAYN ++ + R ++A L ME G
Sbjct: 476 MIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENG 535
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD+ ++ I+++ + G
Sbjct: 536 --CTPDINSHNIILNGLARTG 554
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV-GNFNKARFLLEQMELP 233
LI +LG + +A+ F MK C P+V YN +I +L ++A E+M+
Sbjct: 335 LINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKD 394
Query: 234 GFRCPPDVYTYTILISSYCK 253
G P +TY+ILI YCK
Sbjct: 395 GI--VPSSFTYSILIDGYCK 412
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE-EGLVNEALATFYRMKQFR 199
+ R N+++ EM V T +IK L E + ++EA + F RMK+
Sbjct: 338 ILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNT--IIKSLFEAKAPLSEASSWFERMKKDG 395
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
P + Y+++I+ C+ KA LLE+M+ GF PP Y LI++
Sbjct: 396 IVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGF--PPCPAAYCSLINT 444
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 4/136 (2%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
K E Y+ + H F + VT + FA+ N EM + NG T T
Sbjct: 206 KVHELYNEMCSEVHCFPDTVTYSALISAFAKLNRDDSAIRLFDEM--KENGLQPTAKIYT 263
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L+ + + G V EAL M+ RC V+ Y +I L + G A + M
Sbjct: 264 TLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKD 323
Query: 234 GFRCPPDVYTYTILIS 249
G C PDV LI+
Sbjct: 324 G--CKPDVVLMNNLIN 337
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L G AL F +MK +PDV ++N ++ L R G F +A L+++M GF+
Sbjct: 550 LARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAAKLMQEMSSKGFQ-- 607
Query: 239 PDVYTYTILISSYCK 253
D+ TY+ ++ + K
Sbjct: 608 YDLITYSSILEAVGK 622
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA + F M++ C PD+ ++N+++N L R G A + +M+ + PDV ++
Sbjct: 521 MDEAFSLFRTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIK--PDVVSF 578
Query: 245 TILISSYCKYGM 256
++ + G+
Sbjct: 579 NTILGCLSRAGL 590
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ LI G++G+V+ AL F M++ +C P++ YN +++ L + G N A LLE+ME
Sbjct: 847 SSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEK 906
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
G C PD+ TY ILI K GM
Sbjct: 907 VG--CVPDLVTYNILIDGVGKMGM 928
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ VLG+ G ++ AL F M + RC PDV Y+ +I++L + G +A + E
Sbjct: 777 TSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSIS 836
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
G C P+V Y+ LI S+ K GM
Sbjct: 837 KG--CTPNVGVYSSLIDSFGKKGM 858
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ L + G + EA F MK+ C PD AYN +I+ L + G + A L ++M
Sbjct: 359 TYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEM 418
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQ 257
+ G P++ TY I+IS K G Q
Sbjct: 419 KDRGL--VPNLRTYNIMISVLGKAGRQ 443
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ LG+ G + EA F +M + PDV AY +++ L + G + A + M
Sbjct: 740 TYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAM 799
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
RC PDV TY+ LI S K G
Sbjct: 800 AKK--RCVPDVVTYSSLIDSLGKEG 822
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 71/169 (42%), Gaps = 23/169 (13%)
Query: 106 QKVTLGINKATEFYHWVERFF---HFFHNEVTC-KEMGI-----------VFARGNNVKG 150
Q + G N +T Y++V F+H+ V ++G +F N G
Sbjct: 242 QMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSG 301
Query: 151 LWDF----LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
D ++EM + G V T TV LI L + G ++EA F MK RC P+V
Sbjct: 302 RLDPAAEPIQEMIKSGIDPGVHTFTV--LIDALVKSGNIDEACKFFNGMKNLRCSPNVVT 359
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y ++N L + G +A + +E+ C PD Y LI K G
Sbjct: 360 YTTLVNGLAKAGRLEEACEVF--VEMKENNCSPDAIAYNTLIDGLGKAG 406
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ G V+EA+ MK+ C P V Y +++ L + G ++A LL +M
Sbjct: 530 TYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREM 589
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E G C P V TY+ L++S+ K
Sbjct: 590 EKQG--CEPSVVTYSSLMASFYK 610
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%)
Query: 118 FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK 177
F+ W + + H T M A + L M + G+ ++ +T L++
Sbjct: 168 FFTWAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGH--RISMHLLTSLLR 225
Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
G V+ AL F +MK F C P YN V+ L + G ++ A + + L FR
Sbjct: 226 TFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGK--LGQFRI 283
Query: 238 PPDVYTYTILISSYCKYG 255
PD T+ I + S+ + G
Sbjct: 284 QPDAQTFRIFVHSFNRSG 301
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+EM + G + T + LI +G+ G+V+EA + F RMK+ PDV + +I +
Sbjct: 900 LLEEMEKVGCVPDLVTYNI--LIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIES 957
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L +V +A L + ME G+ P V TY +LI + G
Sbjct: 958 LGKVDKLLEACELFDSMEEEGYN--PSVVTYNVLIDILGRAG 997
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 13/141 (9%)
Query: 122 VERFFHFFHNEVT--CK-EMGIV------FARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
VE ++FF N ++ C +G+ F + V + +EM RR + T
Sbjct: 824 VEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVT--Y 881
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
L+ L + G +N A M++ C PD+ YN++I+ + ++G ++A ++M+
Sbjct: 882 NNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKE 941
Query: 233 PGFRCPPDVYTYTILISSYCK 253
G PDV T+T LI S K
Sbjct: 942 KGI--VPDVITFTSLIESLGK 960
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 154 FLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
KEM RG LV T +I VLG+ G EA F+ +K+ PDV+ YN +I+
Sbjct: 414 LFKEMKDRG---LVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLID 470
Query: 213 ALCRVGNFNKARFLLEQMELPGFRC 237
L + G +K ++++M G C
Sbjct: 471 VLGKGGQMDKVLAIIKEMVEKGGEC 495
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T L+ LG+ G ++EA++ M++ C P V Y+ ++ + + ++ L
Sbjct: 562 TVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLF 621
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++M G C DV TY+++I+ CK
Sbjct: 622 DEMVRKG--CVADVSTYSLVINCLCK 645
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ LG+ + EA F M++ P V YNV+I+ L R G ++A + +M
Sbjct: 950 TFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEM 1009
Query: 231 ELPGFRCPPDVYTYTIL 247
++ G C PD T I+
Sbjct: 1010 KVKG--CMPDGITIGIM 1024
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI LG+ G + A F MK P++ YN++I+ L + G +A L ++ G
Sbjct: 398 LIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQG 457
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PDV+TY LI K G
Sbjct: 458 --AVPDVFTYNTLIDVLGKGG 476
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++V D M G L+ L+ L ++ ++ AL F +++
Sbjct: 643 LCKSDDVDQALDVFGRMKEEGMEPLL--GNYKTLLSSLVKDEKIDFALQIFNELQESSLV 700
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD + YN+++N L + ++A L++ M+ PD++TYT L+ K G
Sbjct: 701 PDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNIL--PDLFTYTSLLDGLGKSG 752
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L+EM ++G +VT S++ +E E+L+ F M + C DV Y++VIN
Sbjct: 585 LLREMEKQGCEPSVVTYSSLMASFYKRDQE---EESLSLFDEMVRKGCVADVSTYSLVIN 641
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC+ + ++A + +M+ G P + Y L+SS K
Sbjct: 642 CLCKSDDVDQALDVFGRMKEEGME--PLLGNYKTLLSSLVK 680
>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
Length = 738
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Query: 125 FFHFFHNEVT-CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG 183
F F ++VT C + + A G+ + L F + ++ ++V ++ L+K L +G
Sbjct: 321 FKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNS---LVKGLCLQG 377
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
L+ AL M + C PD+ YN+VIN LC++GN + A ++ + G+ PDV+T
Sbjct: 378 LILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYL--PDVFT 435
Query: 244 YTILISSYCK 253
+ LI YCK
Sbjct: 436 FNTLIDGYCK 445
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++ AL RM ++ PD YN V+N LC+ G N+ ++M L G C P+ TY
Sbjct: 449 LDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKG--CHPNPITY 506
Query: 245 TILISSYCK 253
ILI ++C+
Sbjct: 507 NILIENFCR 515
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 16/172 (9%)
Query: 95 LVLGPAAYRNPQKVTL-----GINKAT---EFYHWVERFFH--FFHNEVTCKEMGIVFAR 144
LV G AY P VT G+ K + E H++ R + ++ T + + +
Sbjct: 246 LVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCK 305
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTC-LIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ V+ + LK+ +G V C LI L EG V AL F + +PD
Sbjct: 306 ISMVQEATELLKDAVFKG---FVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPD 362
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ YN ++ LC G A ++ +M G C PD+ TY I+I+ CK G
Sbjct: 363 IVVYNSLVKGLCLQGLILHALQVMNEMAEEG--CHPDIQTYNIVINGLCKMG 412
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
I+ G + +A+ F RM F C P AYN +++AL ++A + +M G
Sbjct: 60 IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 119
Query: 236 RCPPDVYTYTILISSYC 252
PD++T+TI + S+C
Sbjct: 120 --SPDLHTHTIRLRSFC 134
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
I+ L E G + EA+ M+ + PDV YN +I LC+ +A L +M G
Sbjct: 231 IRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG- 288
Query: 236 RCPPDVYTYTILISSYCKYGM 256
C PD +TY +I YCK M
Sbjct: 289 -CLPDDFTYNTIIDGYCKISM 308
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
V+ +W++ G T T ++ L + G VNE TF M C P+ Y
Sbjct: 456 VERMWEY---------GIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITY 506
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N++I CR +A ++ +M G PD ++ LI +C+ G
Sbjct: 507 NILIENFCRSNKMEEASKVIVKMSQEGLH--PDAVSFNTLIYGFCRNG 552
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+ + RG V TV C L G ++A F +M P++ A+N V++A
Sbjct: 145 LLRALPHRGA---VAYCTVVC---GLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHA 198
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G+ +A LL ++ G +++TY I I C+ G
Sbjct: 199 LCKRGDVLEAGLLLGKVIQRGMSI--NLFTYNIWIRGLCEAG 238
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI+ + EA +M Q PD ++N +I CR G+ A L +++
Sbjct: 505 TYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKL 564
Query: 231 ELPGFRCPPDVYTYTILISSY 251
E G+ D T+ LI ++
Sbjct: 565 EEKGYSATAD--TFNTLIGAF 583
>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 63/107 (58%), Gaps = 6/107 (5%)
Query: 151 LWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
+WD + EM RG +++T S+ LI L + G ++ A+A F +MK RP+++ + +
Sbjct: 393 VWDLIDEMRDRGQPADVITYSS---LIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTI 449
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+++ LC+ G A+ + + + G+ +VYTY ++I+ +CK G+
Sbjct: 450 LLDGLCKGGRLKDAQEVFQDLLTKGYHL--NVYTYNVMINGHCKQGL 494
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L +EG V EA + M + +PDV Y+ +++ V KA+ + M
Sbjct: 271 TYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAM 330
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
L G PDV+TYTILI+ +CK M
Sbjct: 331 SLMGV--TPDVHTYTILINGFCKNKM 354
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 152 WDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+ EM+ +G + ++VT ST LI EG + EA+ M P+VY YN++
Sbjct: 219 YGLFSEMTVKGISADVVTYST---LIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNIL 275
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
++ALC+ G +A+ +L M + PDV TY+ L+ Y
Sbjct: 276 VDALCKEGKVKEAKSVLAVMLKACVK--PDVITYSTLMDGY 314
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + +V+EAL F M Q P + Y+ +I+ LC+ G L+++M
Sbjct: 341 TYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEM 400
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P DV TY+ LI CK G
Sbjct: 401 RDRG--QPADVITYSSLIDGLCKNG 423
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELV--TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
++ R+ +G L + +I L + LV+EA F M DV Y+ +I
Sbjct: 185 KLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGF 244
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C G +A LL +M L P+VYTY IL+ + CK G
Sbjct: 245 CIEGKLKEAIGLLNEMVLKTIN--PNVYTYNILVDALCKEG 283
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++A++ F RM R P + +N ++++ ++ +++ A L ++EL G + PD+ T
Sbjct: 40 VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQ--PDLITL 97
Query: 245 TILISSYCKYGMQT 258
ILI+ +C G T
Sbjct: 98 NILINCFCHMGQIT 111
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T+ LIK L +G V +AL ++ + + +Y +IN +C++G+ A LL
Sbjct: 129 TVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLR 188
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
+++ G P+V Y+ +I + CKY +
Sbjct: 189 KID--GRLTKPNVEMYSTIIDALCKYQL 214
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V +A F M PDV+ Y ++IN C+ ++A L ++M P + TY
Sbjct: 320 VKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNM--VPGIVTY 377
Query: 245 TILISSYCKYG 255
+ LI CK G
Sbjct: 378 SSLIDGLCKSG 388
>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
Length = 501
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 11/183 (6%)
Query: 72 FRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHN 131
FR L R +K+E ++ ++L+ AY K I +H ++ F H
Sbjct: 95 FRLAETLLDR-MKEEKIDVTEDILLSICRAYGRIHKPLDSI----RVFHKMQDF-HCKPT 148
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE-EGLVNEALA 190
E + + + N +K + F ++M + G VT+ V LIK + G +++A+
Sbjct: 149 EKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNV--LIKAFCKNSGTMDKAMH 206
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F M C PD Y Y +IN LCR + +A+ LL++ME G C P V TYT +I
Sbjct: 207 LFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKG--CSPSVVTYTSIIHG 264
Query: 251 YCK 253
C+
Sbjct: 265 LCQ 267
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 153 DFLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
D L+ M +R +++ ST L+ L EG +NEAL F RMK +PD Y ++
Sbjct: 311 DILELMIQKRLRPNMISYST---LLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIV 367
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
N LC V F +A L++M L G + P+ T+++ + ++
Sbjct: 368 NCLCDVSRFQEAANFLDEMVLCGIK--PNRITWSLHVRTH 405
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L+EM +G V T T +I L + V+EA+ MK P+V+ Y+ +++
Sbjct: 241 ELLQEMETKGCSPSVVT--YTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMD 298
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ G+ ++AR +LE M R P++ +Y+ L++ C G
Sbjct: 299 GFCKTGHSSRARDILELMIQKRLR--PNMISYSTLLNGLCNEG 339
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR-VGNFNKARFL 226
T + ++ +L EE + A + M++ P V + NV+I A C+ G +KA L
Sbjct: 148 TEKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKAFCKNSGTMDKAMHL 207
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKY 254
M G C PD YTY LI+ C++
Sbjct: 208 FRTMSNHG--CEPDSYTYGTLINGLCRF 233
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ + G + A M Q R RP++ +Y+ ++N LC G N+A + ++M
Sbjct: 292 TYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRM 351
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
+L GF+ PD Y +++ C
Sbjct: 352 KLQGFK--PDAGLYGKIVNCLC 371
>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
Length = 698
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALAT 191
VT M ++ + K M RG L V + LI L + ++ AL
Sbjct: 400 VTLSTMIDGLSKAGRIGAAVRIFKSMEARG---LAPNEVVYSALIHGLCKARKMDCALEM 456
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+MK+ C PD YN++I+ LC+ G+ AR ++M G C PDVYTY ILIS
Sbjct: 457 LAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAG--CKPDVYTYNILISGL 514
Query: 252 CKYG 255
CK G
Sbjct: 515 CKAG 518
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI L + G V A A F M + C+PDVY YN++I+ LC+ GN + A +L+
Sbjct: 469 TITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLD 528
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
M F Y+ L+ CK G
Sbjct: 529 DMSSSRF-------VYSSLVDGLCKSG 548
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + T T ++ L + + EA+A ++ C P + YN ++N LC++G +
Sbjct: 253 NGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEE 312
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A LL ++ G C PDV TYT LI K
Sbjct: 313 AIDLLRKIVDNG--CTPDVVTYTSLIDGLGK 341
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
V+ +T + LI L + G++ +A + C D++ Y ++N L + +A L
Sbjct: 222 VSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVAL 281
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
+E++ G C P + TY L++ CK G
Sbjct: 282 MEKITANG--CTPTIATYNALLNGLCKMG 308
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG T T LI LG+E EA F M D Y +I L + G +
Sbjct: 323 NGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQ 382
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A + + M G C PDV T + +I K G
Sbjct: 383 ASSVYKTMTSHG--CVPDVVTLSTMIDGLSKAG 413
>gi|302781572|ref|XP_002972560.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
gi|300160027|gb|EFJ26646.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
Length = 341
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L + G EAL + M C PD+Y YN++INALC+VG A+ L+E M+ CP
Sbjct: 49 LCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQ--ARDCP 106
Query: 239 PDVYTYTILISSYCKYG 255
D+ TY LI C+ G
Sbjct: 107 TDIVTYNTLIHGLCRKG 123
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + +++ E+G +ALA MK + YN+++ LC+ G +A LL M
Sbjct: 6 TYSTIVRGYCEDGETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALDLLHSM 65
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
C PD+YTY ILI++ CK G
Sbjct: 66 ATTS--CAPDIYTYNILINALCKVG 88
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 144 RGNN---VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+GN V+ + +EM +G+ T+ T T +I L + +A M + C
Sbjct: 122 KGNGRFRVERAFRLFEEMVDKGHTP--TSVTYTVVIDALLRVKMDEQAQKVLDLMHENGC 179
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D+ YN++IN + G +KA L +E+P C PDV TY ++ +CK G
Sbjct: 180 AFDLVTYNMLINRFAKAGMMDKAMDLF--VEMPTRGCIPDVVTYNSVVDGFCKAG 232
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG T LI + G++++A+ F M C PDV YN V++ C+ G +
Sbjct: 177 NGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEE 236
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A L +M+ G P+ TYT + + K G
Sbjct: 237 ANKLFAEMKARGIF--PNGRTYTSITDACLKAG 267
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN----FNKARFL 226
T LI L + G + +A M+ C D+ YN +I+ LCR GN +A L
Sbjct: 76 TYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRKGNGRFRVERAFRL 135
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
E+M G P TYT++I + + M
Sbjct: 136 FEEMVDKGH--TPTSVTYTVVIDALLRVKMD 164
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG----LVNEALATFYRMKQF 198
R + +GL + ++ +R ++VT +T LI L +G V A F M
Sbjct: 88 GRLEDAQGLVEMMQ--ARDCPTDIVTYNT---LIHGLCRKGNGRFRVERAFRLFEEMVDK 142
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P Y VVI+AL RV +A+ +L+ M G C D+ TY +LI+ + K GM
Sbjct: 143 GHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENG--CAFDLVTYNMLINRFAKAGM 198
>gi|115447913|ref|NP_001047736.1| Os02g0679200 [Oryza sativa Japonica Group]
gi|50253128|dbj|BAD29374.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537267|dbj|BAF09650.1| Os02g0679200 [Oryza sativa Japonica Group]
Length = 491
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV---TCLIKVLGEEGLVNEALATFYRMKQF 198
F R ++ WDF +M +RG+ + V T ++ LG G + +A F M +
Sbjct: 244 FFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKE 303
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P V YN +I +C+ GN A + + M + G+ P+V TYT+LI C G
Sbjct: 304 GCAPSVATYNALIQVICKKGNVEDAVTVFDGMRVKGY--VPNVVTYTVLIRGLCHAG 358
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EM++ G + +T LI+V+ ++G V +A+ F M+ P+V Y V+I LC
Sbjct: 299 EMAKEGCAP--SVATYNALIQVICKKGNVEDAVTVFDGMRVKGYVPNVVTYTVLIRGLCH 356
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
G ++ LLE+M+ G C P V TY +LI
Sbjct: 357 AGKIDRGLKLLERMKNGG--CEPIVQTYNVLI 386
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G + T T LI+ L G ++ L RMK C P V YNV+I L G
Sbjct: 336 RVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEM 395
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
K L E+M G C P+ TY I+IS+
Sbjct: 396 EKGLDLFEKMS-KGEECLPNQDTYNIIISA 424
>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
Length = 609
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 13/145 (8%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
IN+ T F + F F+ + TCKE G+ G +K L EM +G+ V T
Sbjct: 71 INQQTLFPCFSLSGFSFY-VQTTCKESGV----GQAMK----LLDEMRNKGSKPDVVTYN 121
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
V LI + +EG ++EA+ M + C+P+V +N+++ ++C G + A LL M
Sbjct: 122 V--LINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDML 179
Query: 232 LPGFRCPPDVYTYTILISSYCKYGM 256
G C P V T+ ILI+ C+ G+
Sbjct: 180 RKG--CSPSVVTFNILINFLCRQGL 202
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L +M R+G V T + LI L +GL+ A+ +M C P+ +YN +++
Sbjct: 174 LLSDMLRKGCSPSVVTFNI--LINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHG 231
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ ++A L+ M G C PD+ TY L+++ CK G
Sbjct: 232 FCKEKKMDRAIEYLDIMVSRG--CYPDIVTYNTLLTALCKDG 271
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + + ++L M RG ++VT +T L+ L ++G V+ A+ ++ C
Sbjct: 232 FCKEKKMDRAIEYLDIMVSRGCYPDIVTYNT---LLTALCKDGKVDVAVEILNQLSSKGC 288
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P + YN VI+ L +VG +A LL++M G + PD+ TY+ L+S + G
Sbjct: 289 SPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLK--PDIITYSSLVSGLSREG 341
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L EM R+G +++T S+ L+ L EG V+EA+ F+ ++ RP+ YN ++
Sbjct: 314 LLDEMRRKGLKPDIITYSS---LVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIML 370
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC+ ++A L M RC P TYTILI G+
Sbjct: 371 GLCKSRQTDRAIDFLAYM--ISKRCKPTEATYTILIEGIAYEGL 412
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 153 DFLKEMSRRGNGE-LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ L ++S +G L+T +TV I L + G A+ M++ +PD+ Y+ ++
Sbjct: 278 EILNQLSSKGCSPVLITYNTV---IDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLV 334
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ L R G ++A +E G R P+ TY ++ CK
Sbjct: 335 SGLSREGKVDEAIKFFHDLEGLGIR--PNAITYNSIMLGLCK 374
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+EVT + + + +K + +M +G V T T L+ L + G V+ A
Sbjct: 426 DEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVT--YTALVDGLCKCGEVDIANE 483
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+ M + +P+V YN +IN LC+VGN +A L+E+M+L GF PD TYT ++ +
Sbjct: 484 LLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFF--PDTITYTTIMDA 541
Query: 251 YCKYG 255
YCK G
Sbjct: 542 YCKMG 546
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI G+ G V+ F MK+ + PD Y +I+ LC+ G +AR L +M
Sbjct: 361 TTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLS 420
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G + PD TYT LI YCK G
Sbjct: 421 KGLK--PDEVTYTALIDGYCKAG 441
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTT-STVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + NV + EM R+ ++V T T +I L + G V EA F M
Sbjct: 367 FGKSGNVSVEYKLFDEMKRK---KIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGL 423
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD Y +I+ C+ G +A L QM G P+V TYT L+ CK G
Sbjct: 424 KPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGL--TPNVVTYTALVDGLCKCG 476
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR-PDVYAYNVVINALCRVGNFNKARFLL 227
T + ++ +L + G V EA + +M +FR PDV +Y+V+++ C+V K L+
Sbjct: 252 TVSYNIILHLLCQLGKVKEAHSLLIQM-EFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLM 310
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
E+++ G + P+ YTY +IS CK G
Sbjct: 311 EELQRKGLK--PNQYTYNSIISFLCKTG 336
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L EMS +G V T LI L + G + +A+ M PD Y +++
Sbjct: 483 ELLHEMSEKGLQPNVCT--YNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMD 540
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
A C++G KA LL M G + P + T+ +L++ +C GM
Sbjct: 541 AYCKMGEMAKAHELLRIMLDKGLQ--PTIVTFNVLMNGFCMSGM 582
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 12/112 (10%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVT----CLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
VK L +M RGN V + +V C ++ LG+ L +++ +P+
Sbjct: 268 VKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGK------VLKLMEELQRKGLKPN 321
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y YN +I+ LC+ G +A +L M+ R PD YT LIS + K G
Sbjct: 322 QYTYNSIISFLCKTGRVVEAEQVLRVMK--NQRIFPDNVVYTTLISGFGKSG 371
>gi|356517946|ref|XP_003527646.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Glycine max]
Length = 511
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T TV LI+ L G ++EA ++ F C PDV YN +I+ LC + ++AR LL
Sbjct: 176 VTYTVNILIRGLCRVGEIDEAFKLLKDLRSFGCLPDVITYNTLIHGLCLINEVDRARSLL 235
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++ L G PDV +YT++IS YCK
Sbjct: 236 REVCLNG-EFAPDVVSYTMIISGYCK 260
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R V D +M+ + G + T +V L+ L +++A + + P
Sbjct: 330 RVRQVHQAMDMWHKMNEKNIGASLYTYSV--LVSGLCNNNRLHKARDILRLLNESDIVPQ 387
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ YN VI+ C+ GN ++A ++ +ME+ RC PD T+TILI +C G
Sbjct: 388 PFIYNPVIDGYCKSGNVDEANKIVAEMEVN--RCKPDKLTFTILIIGHCMKG 437
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G T T LI G+ G + ALA + +M C PDV + +IN RV ++
Sbjct: 277 SGTAPNTFTFNALIDGFGKLGDMASALALYSKMLVQGCLPDVATFTSLINGHFRVRQVHQ 336
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYC 252
A + +M +YTY++L+S C
Sbjct: 337 AMDMWHKMNEKNI--GASLYTYSVLVSGLC 364
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L +T T LI V++A+ +++M + +Y Y+V+++ LC +KA
Sbjct: 313 GCLPDVATFTSLINGHFRVRQVHQAMDMWHKMNEKNIGASLYTYSVLVSGLCNNNRLHKA 372
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R +L + P + Y +I YCK G
Sbjct: 373 RDILRLLNESDI--VPQPFIYNPVIDGYCKSG 402
>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
lyrata]
gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
lyrata]
Length = 1010
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+ CKE + ARG +EM RG + T T +I G+ G +++ +
Sbjct: 103 DCMCKEGDVEAARG--------LFEEMKFRG--LIPDTVTYNSMIDGFGKVGRLDDTVCF 152
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F MK C PDV YN +IN C+ G K +M+ G + P+V +Y+ L+ ++
Sbjct: 153 FEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLK--PNVVSYSTLVDAF 210
Query: 252 CKYGM 256
CK GM
Sbjct: 211 CKEGM 215
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 6/149 (4%)
Query: 108 VTLG-INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL 166
+ LG + +A + + ++RF F +C + FA+ G+ F K+M G G
Sbjct: 36 IDLGMVEEAIQCFSKMKRF-RVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMI--GAGAK 92
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
T T +I + +EG V A F MK PD YN +I+ +VG +
Sbjct: 93 PTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCF 152
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
E+M+ C PDV TY LI+ +CK+G
Sbjct: 153 FEEMK--DMCCEPDVITYNALINCFCKFG 179
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 149 KGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
KGL +F +EM R G +V+ ST L+ +EG++ +A+ + M++ P+ Y Y
Sbjct: 183 KGL-EFFREMKRNGLKPNVVSYST---LVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTY 238
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+I+A C++GN + A L +M G +V TYT LI C +
Sbjct: 239 TSLIDAYCKIGNLSDAFRLANEMLQVGVEW--NVVTYTALIDGLCGW 283
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 37/116 (31%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFR----------------------------------- 199
L VL + G+V EA+ F +MK+FR
Sbjct: 31 LFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAG 90
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P V+ YN++I+ +C+ G+ AR L E+M+ G PD TY +I + K G
Sbjct: 91 AKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGL--IPDTVTYNSMIDGFGKVG 144
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 5/141 (3%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++KA +++ + F N M +GN V+ ++M+++G LV T
Sbjct: 321 VSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKG---LVPDRT 377
Query: 172 V-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ ++G V EALA +M + + D+ AY ++ L KAR LE+M
Sbjct: 378 AYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 437
Query: 231 ELPGFRCPPDVYTYTILISSY 251
G P +V ++L Y
Sbjct: 438 IGEGIH-PDEVLCISVLKKHY 457
>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
Length = 633
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + T +I G GLV++A F M+ C+PDV YN +IN L + G+
Sbjct: 452 RANGVVPDVFTYNIMISSFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDL 511
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++A L + M+ G+ PDV+TY+ILI + K
Sbjct: 512 DEAHMLFKDMQEKGY--DPDVFTYSILIECFGK 542
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
MG+ R ++ W R NG T CL++ V + + +M++
Sbjct: 163 MGVEVGRCLDLASKWGL------RLNG-----YTYKCLVQAHLRSREVWKGFEVYEKMRR 211
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
+ D++AYN+++NAL + G ++A + E M+ C PD YTYTILI K G
Sbjct: 212 KGYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQN--YCDPDAYTYTILIRMSGKAGKT 269
Query: 258 T 258
T
Sbjct: 270 T 270
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 153 DFLKEMSRRGNGELVTTST--VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
D L M +G +TT + LG+ V+ + + M+ PDV+ YN++
Sbjct: 411 DLLHMMPEKG----ITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIM 466
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I++ RVG +KA L E+ME C PDV TY +I+ K G
Sbjct: 467 ISSFGRVGLVDKASELFEEME--DGSCKPDVVTYNSMINCLGKNG 509
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L + G+V++A F MKQ C PD Y Y ++I + G K LLE+M G
Sbjct: 224 LLNALAKAGMVDQAYQVFEDMKQNYCDPDAYTYTILIRMSGKAGKTTKFVSLLEEMVSEG 283
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
C ++ Y +I + K M
Sbjct: 284 --CVLNLIAYNTVIEALGKNKM 303
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I LG+ G ++EA F M++ PDV+ Y+++I + + A L ++M
Sbjct: 497 TYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEM 556
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQT 258
G C P++ TY IL+ + G T
Sbjct: 557 VAQG--CIPNIVTYNILLDCLERRGKTT 582
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++KA+E + +E + VT M + ++ K+M +G V T +
Sbjct: 476 VDKASELFEEMEDG-SCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYS 534
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ LI+ G+ V+ A + F M C P++ YN++++ L R G +A E ++
Sbjct: 535 I--LIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTTEAHKFYETLK 592
Query: 232 LPGFRCPPDVYTYTIL 247
G PD TY+IL
Sbjct: 593 QQGL--TPDSITYSIL 606
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 154 FLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L+EM G L+ +TV I+ LG+ +V+EA+ +M + CRP+ + Y+++++
Sbjct: 275 LLEEMVSEGCVLNLIAYNTV---IEALGKNKMVDEAIFMLSKMIESDCRPNQFTYSIMLD 331
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L G ++ +L+ G P VY+Y LI + CK G
Sbjct: 332 VLSTGGQLHRLNEILDICS--GCLNRP-VYSY--LIKALCKSG 369
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 33/115 (28%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LIK L + G +EA + F RM + D YA+ ++ ALC +A LL M G
Sbjct: 361 LIKALCKSGHASEAHSVFCRMWNSHEKGDRYAFVSMLEALCNAEKTTEAIDLLHMMPEKG 420
Query: 235 FRCP---------------------------------PDVYTYTILISSYCKYGM 256
PDV+TY I+ISS+ + G+
Sbjct: 421 ITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFGRVGL 475
>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
chloroplastic-like [Glycine max]
Length = 556
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N +T + + + +WD + +M R +L T + LI L + +++A+A
Sbjct: 383 NTITFNSLIDGLCKSGRIAYVWDLVDKM--RDRSQLADVITYSSLIDALCKNCHLDQAIA 440
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F +M +PD+Y Y ++I+ LC+ G A+ + + + + G+ D+ TYT++IS
Sbjct: 441 LFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHL--DIRTYTVMISG 498
Query: 251 YCKYGM 256
+CK G+
Sbjct: 499 FCKAGL 504
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI LG+EG + A M + +PDV YN +++ V A+++ M
Sbjct: 281 TFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSM 340
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
G P V +YTI+I CK M
Sbjct: 341 AQSGV--TPGVQSYTIMIDGLCKTKM 364
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L + LV EA + M + P+V Y +I C +G +A LL +M+L
Sbjct: 215 IIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKN 274
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PDVYT++ILI + K G
Sbjct: 275 IN--PDVYTFSILIDALGKEG 293
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+T LIK L G V +AL + + D +Y +IN LC++G A L+ +
Sbjct: 141 TLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNL 200
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E + PDV Y I+I S CK
Sbjct: 201 EERSIK--PDVVMYNIIIDSLCK 221
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI G + EA+A MK PDVY ++++I+AL + G A+ +L M
Sbjct: 246 TYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVM 305
Query: 231 ELPGFRCPPDVYTYTILISSY 251
+ PDV TY L+ Y
Sbjct: 306 MKAYVK--PDVVTYNSLVDGY 324
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N VK M++ G V + T+ +I L + +V+EA++ F MK P+
Sbjct: 328 NEVKHAKYVFNSMAQSGVTPGVQSYTI--MIDGLCKTKMVDEAISLFEEMKHKNVIPNTI 385
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+N +I+ LC+ G L+++M DV TY+ LI + CK
Sbjct: 386 TFNSLIDGLCKSGRIAYVWDLVDKMR--DRSQLADVITYSSLIDALCK 431
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G A+ +++ +PDV YN++I++LC+ +A L +M
Sbjct: 180 LINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAK- 238
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ P+V TYT LI +C G
Sbjct: 239 -QIYPNVVTYTTLIYGFCIMG 258
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
N+A+A F RM R P + +N ++++L ++ F A L + ++ G D+ T
Sbjct: 51 NDAVALFNRMLLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGI--TSDLVTLN 108
Query: 246 ILISSYCKYGMQT 258
ILI+ +C G T
Sbjct: 109 ILINCFCHLGQIT 121
>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
Length = 570
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 154 FLKEMSRRGNG--ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
K M RG E+V ++ LI L + ++ AL +MK+ C PD YN++I
Sbjct: 327 IFKSMEARGLAPNEVVYSA----LIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 382
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ LC+ G+ AR ++M G C PDVYTY IL+S +CK G
Sbjct: 383 DGLCKSGDVEAARAFFDEMLEAG--CKPDVYTYNILVSGFCKAG 424
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
D EM + T T+T LI L + G V A A F M + C+PDVY YN++
Sbjct: 357 DCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL 416
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++ C+ GN + A + + M C P+V TY LIS CK
Sbjct: 417 VSGFCKAGNTDAACGVFDDMS--SSHCSPNVVTYGTLISGLCK 457
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ +V+ F EM G V T + L+ + G + A F M C
Sbjct: 385 LCKSGDVEAARAFFDEMLEAGCKPDVYTYNI--LVSGFCKAGNTDAACGVFDDMSSSHCS 442
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V Y +I+ LC+ KA + M+ G CPPD + Y+ L+ CK G
Sbjct: 443 PNVVTYGTLISGLCKRRQLTKASLYFQHMKERG--CPPDSFVYSSLVDGLCKSG 494
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 86/215 (40%), Gaps = 31/215 (14%)
Query: 54 SIPRFFFQSPRSIGRQT------GFRHRTPLKQRILKKE------ADNIANNVLVLGPAA 101
S PRF FQ G RHR +LK E D NVL+ G
Sbjct: 49 SSPRFGFQHSVHTGNALLDVFARTKRHREA--GNLLKNELATTFLPDVETWNVLITGYCL 106
Query: 102 YRNPQKVTLGINKATEFYHWVERFFHFFHNEVT---CKEMGIVFARGNNVKGLWDFLKEM 158
R P++ I + E Y HN V CK G V A ++ +
Sbjct: 107 AREPEEAFAVIREMEEDYGVAPSLKT--HNLVLHGLCKS-GKVLAAMDHFE--------- 154
Query: 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
+ NG + T T ++ L + + +A+A ++ C P + YN ++N LC++G
Sbjct: 155 TTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMG 214
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+A LL ++ G C PDV TYT LI K
Sbjct: 215 RLEEAIDLLRKIVDNG--CTPDVVTYTSLIDGLGK 247
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ KEM+ RG ++ T T LI+ L + G + +A + + M C PDV + +I
Sbjct: 255 YKLFKEMALRG--LVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMI 312
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ LC+ G A + + ME G P+ Y+ LI CK
Sbjct: 313 DGLCKAGRIGAAVRIFKSMEARGL--APNEVVYSALIHGLCK 352
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT ST +I L + G + A+ F M+ P+ Y+ +I+ LC+ + A
Sbjct: 304 DVVTLST---MIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCAL 360
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+L QM+ F C PD TY ILI CK G
Sbjct: 361 EMLAQMK-KAF-CTPDTITYNILIDGLCKSG 389
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 142 FARGNNVKGLWDFLKEMSR-RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + N +MS + +VT T LI L + + +A F MK+ C
Sbjct: 420 FCKAGNTDAACGVFDDMSSSHCSPNVVTYGT---LISGLCKRRQLTKASLYFQHMKERGC 476
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD + Y+ +++ LC+ G L ++ME G + T T LI CK
Sbjct: 477 PPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV---ANSQTRTRLIFHLCK 526
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG T T LI LG+E EA F M D Y +I L + G +
Sbjct: 229 NGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQ 288
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A + + M G C PDV T + +I CK G
Sbjct: 289 ASSVYKTMTSQG--CVPDVVTLSTMIDGLCKAG 319
>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
Length = 443
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 154 FLKEMSRRGNG--ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
K M RG E+V ++ LI L + ++ AL +MK+ C PD YN++I
Sbjct: 196 IFKSMEARGLAPNEVVYSA----LIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 251
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ LC+ G+ AR ++M G C PDVYTY ILIS +CK G
Sbjct: 252 DGLCKSGDVAAARAFFDEMLEAG--CKPDVYTYNILISGFCKAG 293
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
D EM + T T+T LI L + G V A A F M + C+PDVY YN+
Sbjct: 225 MDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNI 284
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+I+ C+ GN + A + + M RC P+V TY LIS CK
Sbjct: 285 LISGFCKAGNTDAACGVFDDMS--SSRCSPNVVTYGTLISGLCK 326
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ +V F EM G V T + LI + G + A F M RC
Sbjct: 254 LCKSGDVAAARAFFDEMLEAGCKPDVYTYNI--LISGFCKAGNTDAACGVFDDMSSSRCS 311
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V Y +I+ LC+ KA + M+ G CPPD + Y+ L+ CK G
Sbjct: 312 PNVVTYGTLISGLCKRRQLTKASLYYQHMKERG--CPPDSFVYSSLVDGLCKSG 363
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + T T ++ L + + EA+A ++ C P + YN ++N LC++G +
Sbjct: 28 NGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEE 87
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A LL ++ G C PDV TYT LI K
Sbjct: 88 AIDLLRKIVDNG--CTPDVVTYTSLIDGLGK 116
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ KEM+ RG + T T LI+ L + G + +A + + M C PDV + +I
Sbjct: 124 YKLFKEMASRGLA--LDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMI 181
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ LC+ G A + + ME G P+ Y+ LI CK
Sbjct: 182 DGLCKAGRIGAAVRIFKSMEARGL--APNEVVYSALIHGLCK 221
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT ST +I L + G + A+ F M+ P+ Y+ +I+ LC+ + A
Sbjct: 173 DVVTLST---MIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCAL 229
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+L QM+ F C PD TY ILI CK G
Sbjct: 230 EMLAQMK-KAF-CTPDTITYNILIDGLCKSG 258
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 142 FARGNNVKGLWDFLKEMSR-RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + N +MS R + +VT T LI L + + +A + MK+ C
Sbjct: 289 FCKAGNTDAACGVFDDMSSSRCSPNVVTYGT---LISGLCKRRQLTKASLYYQHMKERGC 345
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD + Y+ +++ LC+ G L ++ME G + T T LI CK
Sbjct: 346 PPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV---ANSQTRTRLIFHLCK 395
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG T T LI LG++ EA F M D Y +I L + G +
Sbjct: 98 NGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQ 157
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A + + M G C PDV T + +I CK G
Sbjct: 158 ASSVYKTMTSQG--CVPDVVTLSTMIDGLCKAG 188
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L + G++ +A + C D++ Y +++ L + +A L+E++
Sbjct: 1 TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P + TY L++ CK G
Sbjct: 61 TANG--CTPTIATYNALLNGLCKMG 83
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 11/166 (6%)
Query: 90 IANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVK 149
I +NV++ G + R ++ A E + +E + T + + V
Sbjct: 913 ILHNVVIKGLCSARK-------LDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVD 965
Query: 150 GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
+++M +G V T + L+ L + G ++EA A RM + C P++ YN
Sbjct: 966 DACRLVEDMVSKGCSPNVVT--YSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNT 1023
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+I+ C++G ++A LLE+M G C P+V TYT+L+ ++CK G
Sbjct: 1024 IIDGHCKLGRIDEAYHLLEEMVDGG--CQPNVVTYTVLLDAFCKCG 1067
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G + T + +I ++ ++ A RMK+ +C PDV Y+ +IN LC+ G
Sbjct: 537 RAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTV 596
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+KA + ++M G C P++ TY LI CK
Sbjct: 597 DKAFDVFQEM--LGCGCAPNLVTYNTLIDGLCK 627
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+N+A F RM+ PDV Y++VI++ C+ N + A +LE+M+ +C PDV TY
Sbjct: 526 INDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEA--KCVPDVVTY 583
Query: 245 TILISSYCKYG 255
+ LI+ CK G
Sbjct: 584 SALINGLCKAG 594
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 39/149 (26%)
Query: 142 FARGNNVK-GLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F + N V+ LW L++M RG ++V+ +TV I L + V+EA +M Q
Sbjct: 275 FCKANRVENALW-LLEQMVTRGCPPDVVSYTTV---INGLCKLDQVDEACRVMDKMIQRG 330
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR----------------------- 236
C+P+V Y +++ CRVG+ + A L+ +M G+R
Sbjct: 331 CQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAH 390
Query: 237 ----------CPPDVYTYTILISSYCKYG 255
CPPD Y+ +IS +CK G
Sbjct: 391 QVLQMMIQTGCPPDAINYSTIISGFCKAG 419
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 142 FARGNNVKGLWDFLKEMSR-RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + NN+ + L+ M + ++VT S LI L + G V++A F M C
Sbjct: 555 FCKDNNLDSAFKMLERMKEAKCVPDVVTYSA---LINGLCKAGTVDKAFDVFQEMLGCGC 611
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P++ YN +I+ LC++ +A +LE M C PD TYT LI+ C
Sbjct: 612 APNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQS--CTPDSITYTCLINGLC 661
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EMS+ + VT +T +I L + +++A+ M P+V++YN V++ C
Sbjct: 220 REMSKTCPPDSVTYNT---MINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFC 276
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ A +LLEQM G CPPDV +YT +I+ CK
Sbjct: 277 KANRVENALWLLEQMVTRG--CPPDVVSYTTVINGLCK 312
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + + EA + M + RC PDV YN V++ LC+ N A L ++M G
Sbjct: 481 LIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAG 540
Query: 235 FRCPPDVYTYTILISSYCK 253
PDV TY+I+I S+CK
Sbjct: 541 VM--PDVVTYSIVIHSFCK 557
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + ++ D L++M RRG V + ++ LI L + ++ A C
Sbjct: 415 FCKAGKLREAHDLLEQMIRRGCRPDV--ACLSTLIDALCKAAAIDSAQELLRMSIGMDCA 472
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDV AY+++I+ALC+ +A L+ M RC PDV TY ++ CK
Sbjct: 473 PDVVAYSILIHALCKAKRLPEAESWLDVM--VKNRCYPDVVTYNSVVDGLCK 522
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R ++ G + +++M+ RG T ++ V + A M Q C
Sbjct: 345 FCRVGDLDGAVELVRKMTERGYRP--NAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCP 402
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y+ +I+ C+ G +A LLEQM G C PDV + LI + CK
Sbjct: 403 PDAINYSTIISGFCKAGKLREAHDLLEQMIRRG--CRPDVACLSTLIDALCK 452
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRC 200
F R + ++ EM+R+G L + V +++ L + G ++A+ F M + C
Sbjct: 171 FIRAGKILPAYELFDEMNRKG---LKAHAGVHKSILRGLCDAGQCSDAVLHFREMSK-TC 226
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD YN +IN L + + A LLE+M GF P+V++Y ++ +CK
Sbjct: 227 PPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGF--APNVFSYNTVLHGFCK 277
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L G + A M + +V +NVVI LC + A L ++M
Sbjct: 879 TFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEM 938
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G CPPDV+TY+ ++ S K G
Sbjct: 939 EESG-SCPPDVFTYSTIVDSLVKSG 962
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
C PD+ YN VI+ LC+ ++A L QM G PD TY+I+ISS CK+
Sbjct: 1225 CSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL--APDDVTYSIVISSLCKW 1277
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ + ++ V A M Q C P+V +YN VI LC+ ++ LLEQM
Sbjct: 1090 TYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQM 1149
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C PD+ T+ +I + CK
Sbjct: 1150 --LSNNCVPDIVTFNTIIDAMCK 1170
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L+ M+R G + +VT +T+ I + G ++EA M C+P+V Y V+++
Sbjct: 1005 LLQRMTRSGCSPNIVTYNTI---IDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLD 1061
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A C+ G A L+E M G+ P+++TY L+ +CK
Sbjct: 1062 AFCKCGKAEDAIGLVEVMVEKGY--VPNLFTYNSLLDMFCK 1100
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT +T+ I + + V+ A F +++ C P++ YN +++ LC+ F++A
Sbjct: 1157 DIVTFNTI---IDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAE 1213
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCK 253
+LL +M C PD+ TY +I CK
Sbjct: 1214 YLLREMTRKQ-GCSPDIITYNTVIDGLCK 1241
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 154 FLKEMSRRG--NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
L+EM+R+ + +++T +TV I L + V+ A F +M PD Y++VI
Sbjct: 1215 LLREMTRKQGCSPDIITYNTV---IDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVI 1271
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++LC+ ++A +LE M GF P TY LI +CK G
Sbjct: 1272 SSLCKWRFMDEANNVLELMLKNGF--DPGAITYGTLIDGFCKTG 1313
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ V +D +EM G LVT +T LI L + V +A M++ C
Sbjct: 590 LCKAGTVDKAFDVFQEMLGCGCAPNLVTYNT---LIDGLCKINKVEQAAEMLEIMRKQSC 646
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
PD Y +IN LC +A +L +M+ G C PD TY L+ +
Sbjct: 647 TPDSITYTCLINGLCNASRLEEAWRVLREMKDKG--CLPDRMTYGTLLRA 694
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ L+EM G V T TV L+ + G +A+ M + P+++ YN ++
Sbjct: 1038 YHLLEEMVDGGCQPNVVTYTV--LLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLL 1095
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ C+ +A LL M G C P+V +Y +I+ CK
Sbjct: 1096 DMFCKKDEVERACQLLSSMIQKG--CVPNVVSYNTVIAGLCK 1135
Score = 37.0 bits (84), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T TCLI L + EA MK C PD Y ++ AL + N LL++M
Sbjct: 652 TYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEM 711
Query: 231 E 231
E
Sbjct: 712 E 712
>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
Length = 556
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L ++G ++A+ F M+ R PD++ YN VI+ LC+ GN KAR LLE+M G
Sbjct: 103 LIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRG 162
Query: 235 FRCPPDVYTYTILISS-YCKYG 255
+ PD+ TY LI++ CK G
Sbjct: 163 GKSAPDIVTYNTLINAGICKDG 184
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV-LGEEGLVNEALATFYRMKQFRC 200
+ N++ + L+EM RRG T LI + ++G V EAL MK
Sbjct: 142 LCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGP 201
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PDV YN +I+ALC G +A +L+ M C PD+ T+ L+ +CK GM
Sbjct: 202 APDVITYNSIIHALCVAGRVVEAAEILKTMS-----CSPDLVTFNTLLDGFCKAGM 252
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ LK MS + +LVT +T L+ + G++ AL M + PDV Y +++N
Sbjct: 226 EILKTMS--CSPDLVTFNT---LLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVN 280
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LCRVG A +LLE++ G+ PDV YT L+ CK G
Sbjct: 281 GLCRVGQVQVAFYLLEEIVRQGY--IPDVIAYTSLVDGLCKSG 321
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA---------LATFYRMKQFRCRPDV 204
L+E+ R+G + T L+ L + G + EA M P +
Sbjct: 294 LLEEIVRQGY--IPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPL 351
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ YN+V+ L + G+ +KA L+ + G+ PDV TY LI CK
Sbjct: 352 FTYNIVLGGLIKDGSISKAVSLISDLVARGY--VPDVVTYNTLIDGLCK 398
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + V EA M C P+ V+ LCRVG + A L+ +M
Sbjct: 388 TYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEM 447
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
R P+V YT LI CK
Sbjct: 448 SRK--RHAPNVVVYTSLIDGLCK 468
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + + L+EM R L T T L+ L G V A + +
Sbjct: 247 FCKAGMLPRALEVLEEMCRENI--LPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYI 304
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQM-------ELPGFRCPPDVYTYTILISSYCKY 254
PDV AY +++ LC+ G +A L+++M E+ P ++TY I++ K
Sbjct: 305 PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKD 364
Query: 255 G 255
G
Sbjct: 365 G 365
>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T CL+ L + ++EAL F MK +C P+ Y+++I+ LC++ FNKA ++M
Sbjct: 726 TWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEM 785
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ GF+ P+V+TYT +IS K G
Sbjct: 786 QKQGFK--PNVFTYTTMISGLAKAG 808
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V W F EM + NG ++ T T +I VL + +NEA+ F M Q +
Sbjct: 280 FGKAGKVDMAWKFFHEM--KANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQV 337
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P YAYN +I G F A LLE+ G C P V +Y ++S + G
Sbjct: 338 PCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKG--CIPSVVSYNCILSCLGRKG 389
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 138 MGIVFARGNNVKG--LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
M VF G KG L+ +K + G + + T LI L + G +EA FY M
Sbjct: 556 MDCVFKAGEIEKGRALFQEIKNL-----GFIPDARSYTILIHGLVKAGFAHEAYELFYTM 610
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
K+ C D AYN VI+ C+ G NKA LLE+M+ G P V TY +I K
Sbjct: 611 KEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHE--PTVVTYGSVIDGLAK 666
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G V T LI+V EG V+ AL+ MK PDV YNV I+ + G + A
Sbjct: 230 GYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMA 289
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M+ G D TYT +I CK
Sbjct: 290 WKFFHEMKANGL--VLDDVTYTSMIGVLCK 317
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+N A ++ W ER H + +V AR L L+EMS G G S
Sbjct: 110 VNNAVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFG----PSN 165
Query: 172 VTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
TC+ VL + + EA M++ + RP AY +I AL + + L +Q
Sbjct: 166 NTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQ 225
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M+ G+ +V+ +T LI + + G
Sbjct: 226 MQELGY--AVNVHLFTTLIRVFAREG 249
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 76/202 (37%), Gaps = 46/202 (22%)
Query: 93 NVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHN-EVTC----KEMGIVFARGNN 147
N LVL Y + V + KA VE F H N +V C M + +
Sbjct: 299 NGLVLDDVTYTSMIGV---LCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGK 355
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ---------- 197
+ + L+ R+G + + + C++ LG +G V+EAL F MK+
Sbjct: 356 FEDAYSLLERQRRKGC--IPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYN 413
Query: 198 ----FRCR--------------------PDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
C+ P+V N++++ LC+ + A + E ++
Sbjct: 414 IMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHK 473
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
C PD TY LI ++G
Sbjct: 474 --TCRPDAVTYCSLIEGLGRHG 493
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI+ + G + + M + C PD+ N ++ + + G K R L ++++
Sbjct: 518 TSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKN 577
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
GF PD +YTILI K G
Sbjct: 578 LGF--IPDARSYTILIHGLVKAG 598
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 43/115 (37%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
VFAR V L EM V V I G+ G V+ A F+ MK
Sbjct: 244 VFAREGRVDAALSLLDEMKSNSLEPDVVLYNVC--IDCFGKAGKVDMAWKFFHEMKANGL 301
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D Y +I LC+ N+A L E M+ + P Y Y +I Y G
Sbjct: 302 VLDDVTYTSMIGVLCKADRLNEAVELFEHMDQN--KQVPCAYAYNTMIMGYGMAG 354
>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T CL+ L + ++EAL F MK +C P+ Y+++I+ LC++ FNKA ++M
Sbjct: 726 TWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEM 785
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ GF+ P+V+TYT +IS K G
Sbjct: 786 QKQGFK--PNVFTYTTMISGLAKAG 808
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 138 MGIVFARGNNVKG--LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
M VF G KG L+ +K + G + + T LI L + G +EA FY M
Sbjct: 556 MDCVFKAGEIEKGRALFQEIKNL-----GFIPDARSYTILIHGLVKAGFAHEAYELFYTM 610
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
K+ C D AYN VI+ C+ G NKA LLE+M+ G P V TY +I K
Sbjct: 611 KEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHE--PTVVTYGSVIDGLAK 666
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V W EM + NG ++ T T +I VL + +NEA+ F M Q +
Sbjct: 280 FGKAGKVDMAWKXFHEM--KANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQV 337
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P YAYN +I G F A LLE+ G C P V +Y ++S + G
Sbjct: 338 PCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKG--CIPSVVSYNCILSCLGRKG 389
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G V T LI+V EG V+ AL+ MK PDV YNV I+ + G + A
Sbjct: 230 GYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMA 289
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M+ G D TYT +I CK
Sbjct: 290 WKXFHEMKANGL--VLDDVTYTSMIGVLCK 317
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+N A ++ W ER H + +V AR L L+EMS G G S
Sbjct: 110 VNNAVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFG----PSN 165
Query: 172 VTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
TC+ VL + + EA M++ + RP AY +I AL + + L +Q
Sbjct: 166 NTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQ 225
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M+ G+ +V+ +T LI + + G
Sbjct: 226 MQELGY--AVNVHLFTTLIRVFAREG 249
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 76/202 (37%), Gaps = 46/202 (22%)
Query: 93 NVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHN-EVTC----KEMGIVFARGNN 147
N LVL Y + V + KA VE F H N +V C M + +
Sbjct: 299 NGLVLDDVTYTSMIGV---LCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGK 355
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ---------- 197
+ + L+ R+G + + + C++ LG +G V+EAL F MK+
Sbjct: 356 FEDAYSLLERQRRKGC--IPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYN 413
Query: 198 ----FRCR--------------------PDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
C+ P+V N++++ LC+ + A + E ++
Sbjct: 414 IMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHK 473
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
C PD TY LI ++G
Sbjct: 474 --TCRPDAVTYCSLIEGLGRHG 493
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 43/115 (37%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
VFAR V L EM V V I G+ G V+ A F+ MK
Sbjct: 244 VFAREGRVDAALSLLDEMKSNSLEPDVVLYNVC--IDCFGKAGKVDMAWKXFHEMKANGL 301
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D Y +I LC+ N+A L E M+ + P Y Y +I Y G
Sbjct: 302 VLDDVTYTSMIGVLCKADRLNEAVELFEHMDQN--KQVPCAYAYNTMIMGYGMAG 354
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI+ + G + + M + C PD+ N ++ + + G K R L ++++
Sbjct: 518 TSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKN 577
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
GF PD +YTILI K G
Sbjct: 578 LGF--IPDARSYTILIHGLVKAG 598
>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
Length = 932
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+ + L EM + L+ V + + G +G + EA+ TF RM F C P VY+YN +
Sbjct: 138 MENLLSEMRSNLDNTLLEGVYVEAM-RFYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAI 196
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+N L G FN+A + M + + DVYTYTI I S+C+ G
Sbjct: 197 MNILVEFGYFNQAHKVY--MRMKDKKVESDVYTYTIRIKSFCRTG 239
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LIK L ++GL+ AL M + C+PD++ YN++IN LC++G + A L+ G
Sbjct: 476 LIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKG 535
Query: 235 FRCPPDVYTYTILISSYCK 253
C PD++TY L+ YC+
Sbjct: 536 --CIPDIFTYNTLVDGYCR 552
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + ++ G + + M ++ + TT+T +I E+ + AL F MK+ C
Sbjct: 655 FCKVGDLDGAYGLFRGMEKQYDVSH-TTATYNIIISAFSEQLNMKMALRLFSEMKKNGCD 713
Query: 202 PDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYC 252
PD Y Y V+I+ C+ GN N+ +FLLE +E GF P + T+ +++ C
Sbjct: 714 PDNYTYRVLIDGFCKTGNVNQGYKFLLENIE-KGF--IPSLTTFGRVLNCLC 762
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T I+ L +EG ++ A+ + + RPDV YN VI LCR +A L +M
Sbjct: 332 TFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKM 391
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
GF P+ +TY +I YCK GM
Sbjct: 392 VNGGFE--PNDFTYNSIIDGYCKKGM 415
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ ++G ++A+A F RP + YN +I LC+ G A L+ +M
Sbjct: 437 TYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEM 496
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C PD++TY ++I+ CK G
Sbjct: 497 AEKG--CKPDIWTYNLIINGLCKMG 519
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + E + F M + C P++ YN +I +LC N+A LL +M
Sbjct: 577 TYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEM 636
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G PDV ++ LI+ +CK G
Sbjct: 637 KSKGL--TPDVVSFGTLITGFCKVG 659
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVV 210
D L EM +G ++V+ T LI + G ++ A F M KQ+ YN++
Sbjct: 631 DLLGEMKSKGLTPDVVSFGT---LITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNII 687
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I+A N A L +M+ G C PD YTY +LI +CK G
Sbjct: 688 ISAFSEQLNMKMALRLFSEMKKNG--CDPDNYTYRVLIDGFCKTG 730
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 141 VFARGNNVKGLWD----FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
+F +G +G D L +SR G ++VT +TV C L + V EA ++M
Sbjct: 335 IFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVIC---GLCRKSRVVEAEECLHKM 391
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ + YN +I+ C+ G A +L+ GF+ PD +TY L++ +C+ G
Sbjct: 392 VNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFK--PDEFTYCSLVNGFCQDG 449
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T L+ L ++G V E+ F ++ + P+++ +N+ I LC+ G+ ++A LL
Sbjct: 296 TTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGC 355
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
+ G R PDV TY +I C+
Sbjct: 356 VSREGLR--PDVVTYNTVICGLCR 377
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ +L E G N+A + RMK + DVY Y + I + CR G A LL M P
Sbjct: 196 IMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNM--PV 253
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C + Y +++ + ++G
Sbjct: 254 LGCFSNAVAYCTVVTGFYEFG 274
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+ EM+ +G + T + +I L + G +++A C PD++ YN +++
Sbjct: 492 LMNEMAEKGCKPDIWTYNL--IINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDG 549
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
CR + A L+ +M G PDV TY L++ CK
Sbjct: 550 YCRQLKLDSAIELVNRMWSQGM--TPDVITYNTLLNGLCK 587
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++ A+ RM PDV YN ++N LC+ + + + M G C P++ TY
Sbjct: 556 LDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKG--CAPNIITY 613
Query: 245 TILISSYC 252
+I S C
Sbjct: 614 NTIIESLC 621
>gi|218191356|gb|EEC73783.1| hypothetical protein OsI_08468 [Oryza sativa Indica Group]
Length = 616
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV---TCLIKVLGEEGLVNEALATFYRMKQF 198
F R ++ WDF +M +RG+ + V T ++ LG G + +A F M +
Sbjct: 244 FFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKE 303
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P V YN +I +C+ GN A + + M + G+ P+V TYT+LI C G
Sbjct: 304 GCAPSVATYNALIQVICKKGNVEDAVTVFDGMLVKGY--VPNVVTYTVLIRGLCHAG 358
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EM++ G + +T LI+V+ ++G V +A+ F M P+V Y V+I LC
Sbjct: 299 EMAKEGCAP--SVATYNALIQVICKKGNVEDAVTVFDGMLVKGYVPNVVTYTVLIRGLCH 356
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
G ++ LLE+M+ G C P V TY +LI
Sbjct: 357 AGKIDRGLKLLERMKNGG--CEPIVQTYNVLI 386
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ L G ++ L RMK C P V YNV+I L G K L E+M
Sbjct: 346 TYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKM 405
Query: 231 ELPGFRCPPDVYTYTILISS 250
G C P+ TY I+IS+
Sbjct: 406 S-KGEECLPNQDTYNIIISA 424
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F+R + + + +++M + G + +LVT + CL+ L + G + EA M + C
Sbjct: 312 FSRADRLADAYRVMEDMFKAGISPDLVTYN---CLLDGLCKAGKLEEAHELLEVMVEKDC 368
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV Y++++N LC++G + AR LLE M G C P++ T+ +I +CK G
Sbjct: 369 APDVVTYSILVNGLCKLGKVDDARLLLEMMLERG--CQPNLVTFNTMIDGFCKAG 421
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ N ++ + L+EM G T + ++ L E G EA +M + +C
Sbjct: 207 LCKQNQLEEVSKLLEEMVEAGREP--DTFSYNTVVACLCESGKYEEAGKILEKMIEKKCG 264
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
PDV YN +++ C+V ++A LLE M G RC P V TYT LI +
Sbjct: 265 PDVVTYNSLMDGFCKVSKMDEAERLLEDM--VGRRCAPTVITYTTLIGGF 312
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+EAL M + C P++Y Y+++IN LC+ A +L+ M G C PDV TYT
Sbjct: 523 DEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKG--CVPDVATYT 580
Query: 246 ILISSYCK 253
LI +CK
Sbjct: 581 SLIDGFCK 588
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ L + G V++A M + C+P++ +N +I+ C+ G ++ +LE M
Sbjct: 374 TYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELM 433
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ C PDV TY+ LI YCK
Sbjct: 434 K--EVSCTPDVVTYSTLIDGYCK 454
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 8/115 (6%)
Query: 142 FARGNNVKGLWDFLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F+R N K + + EM +RR + +++T +T+ +K + G ++ AL+ F R K + C
Sbjct: 34 FSRAGNSKMVLEIANEMLARRFSPDVITHNTI---LKAYCQIGDLDRALSHF-RGKMW-C 88
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P + Y ++I+ LC+ ++A LL++M C PD Y LI+ CK G
Sbjct: 89 SPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQK--DCHPDAAVYNCLIAGLCKMG 141
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LI L + ++EA M Q C PD YN +I LC++G + AR +L
Sbjct: 91 TAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVL 150
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
+ M C PDV TYT LI C+
Sbjct: 151 KMM--LERSCVPDVITYTSLIVGCCQ 174
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+ MS RG + T ++ LI L + V +A+ M + C PDV Y +I+
Sbjct: 528 MLQVMSERGCEPNLYTYSI--LINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDG 585
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C++ + A + M G C PD Y ILIS +C+ G
Sbjct: 586 FCKINKMDAAYQCFKTMRDSG--CEPDKLAYNILISGFCQSG 625
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
CLI L + G ++ A M + C PDV Y +I C+ ++AR L+E+M+
Sbjct: 132 CLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKES 191
Query: 234 GFRCPPDVYTYTILISSYCK 253
G PD Y L++ CK
Sbjct: 192 GL--TPDTVAYNALLNGLCK 209
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + ++EA +MK+ PD AYN ++N LC+ + LLE+M
Sbjct: 164 TYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEM 223
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PD ++Y +++ C+ G
Sbjct: 224 VEAGRE--PDTFSYNTVVACLCESG 246
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD ++YN V+ LC G + +A +LE+M +C PDV TY L+ +CK
Sbjct: 229 EPDTFSYNTVVACLCESGKYEEAGKILEKM--IEKKCGPDVVTYNSLMDGFCK 279
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T T LI + ++ A F M+ C PD AYN++I+ C+ GN KA +++
Sbjct: 577 ATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQL 636
Query: 230 MELPGFRCPPDVYTYTILISS 250
M G C PD TY L+ S
Sbjct: 637 MLEKG--CNPDAATYFSLMRS 655
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
++ + +++ L G V EA M + C P Y ++I LC V ++A +L+
Sbjct: 472 ASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQV 531
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
M G C P++YTY+ILI+ CK
Sbjct: 532 MSERG--CEPNLYTYSILINGLCK 553
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+ ST LI G L M R PDV +N ++ A C++G+ ++A
Sbjct: 23 SNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRA---- 78
Query: 228 EQMELPGFR----CPPDVYTYTILISSYCK 253
L FR C P +TY ILI C+
Sbjct: 79 ----LSHFRGKMWCSPTAFTYCILIHGLCQ 104
>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Cucumis sativus]
Length = 857
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+K L ++GLV +AL M + C PD++ YN+V+N LC++G + A +L G
Sbjct: 397 LVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKG 456
Query: 235 FRCPPDVYTYTILISSYCK 253
C PD++T+ LI YCK
Sbjct: 457 --CIPDIFTFNTLIDGYCK 473
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A + ++ V+ F H T K M + + D L EM + + +++ +
Sbjct: 23 ALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIG- 81
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++ G +G V EA+ F RM + C P V +YN ++N L G F++A + +M+ G
Sbjct: 82 IMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG 141
Query: 235 FRCPPDVYTYTILISSYCKYGMQT 258
PDVYT+TI + S+C G T
Sbjct: 142 IY--PDVYTHTIRMKSFCITGRPT 163
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + V + KEM RG ++VT T+ C + GE E T K+++
Sbjct: 541 FCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIE--KEYKF 598
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+N++INA C N + A L +M G C PD YTY ++I SYCK G
Sbjct: 599 SYSTAIFNIMINAFCEKLNVSMAEKLFHKM--GGSDCAPDNYTYRVMIDSYCKTG 651
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI VL ++G V E+ F ++ + P+++ +N+ I LCR G ++A LLE + G
Sbjct: 222 LIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEG 281
Query: 235 FRCPPDVYTYTILISSYCKY 254
PDV +Y LI +CK+
Sbjct: 282 L--TPDVISYNTLICGFCKH 299
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G++N+A+A C PD++ +N +I+ C+ N +KA +L+ M G PDV
Sbjct: 447 GILNDAIAK-------GCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGI--TPDVI 497
Query: 243 TYTILISSYCK 253
TY L++ CK
Sbjct: 498 TYNTLLNGLCK 508
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+ M PDV YN ++N LC+ + + M G C P++ TY
Sbjct: 477 MDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKG--CTPNIITY 534
Query: 245 TILISSYCK 253
ILI S+CK
Sbjct: 535 NILIESFCK 543
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
EA ++M P+ + YN +IN C+ G A +L GF PD +TY+
Sbjct: 304 EAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGF--IPDEFTYSS 361
Query: 247 LISSYCKYG 255
LI+ C G
Sbjct: 362 LINGLCNDG 370
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V + NV+ ++ +RG + T + I+ L +G ++EA +
Sbjct: 225 VLCKKGNVQESEKLFSKVMKRGVCPNLFTFNI--FIQGLCRKGAIDEAARLLESIVSEGL 282
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PDV +YN +I C+ +A L +M G P+ +TY +I+ +CK GM
Sbjct: 283 TPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVE--PNEFTYNTIINGFCKAGM 336
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+ + ++ +L E G ++A + RMK PDVY + + + + C G A LL
Sbjct: 110 SVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLL 169
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
M PG C + +Y +IS + K Q
Sbjct: 170 NNM--PGQGCEFNAVSYCAVISGFYKENCQ 197
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR-FL 226
+T+ +I E+ V+ A F++M C PD Y Y V+I++ C+ GN + A FL
Sbjct: 601 STAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFL 660
Query: 227 LEQME---LPGF 235
LE + +P F
Sbjct: 661 LENISKGLVPSF 672
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + N+ + L M G +++T +T L+ L + ++ + TF M + C
Sbjct: 471 YCKQRNMDKAIEILDTMLSHGITPDVITYNT---LLNGLCKARKLDNVVDTFKAMLEKGC 527
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++ YN++I + C+ ++A L ++M+ G PD+ T LI C G
Sbjct: 528 TPNIITYNILIESFCKDRKVSEAMELFKEMKTRGL--TPDIVTLCTLICGLCSNG 580
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 187 EALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
EA F M KQ C PD+ +N +I+ LC+ GN ++ L ++ G P+++T+
Sbjct: 199 EAYHLFDEMLKQGIC-PDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGV--CPNLFTFN 255
Query: 246 ILISSYCKYG 255
I I C+ G
Sbjct: 256 IFIQGLCRKG 265
>gi|449485620|ref|XP_004157226.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g55630-like [Cucumis sativus]
Length = 476
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 4/139 (2%)
Query: 117 EFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLI 176
+F+ W R ++ H + + +FA K +W L EM+ +G VT T LI
Sbjct: 136 KFFIWSGRIENYRHTVNSYHIIMKIFAECEEFKAMWRVLDEMTEKGYP--VTARTFMILI 193
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
GE GL + F + K F RP ++YN +++ L V + ++ +QM L
Sbjct: 194 CTCGEAGLAKRVVERFIKSKTFNFRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDH- 252
Query: 237 CPPDVYTYTILISSYCKYG 255
PD+ TY +L+ S CK G
Sbjct: 253 -SPDILTYNVLLFSSCKLG 270
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L EM+R+G T + L+ VLG+ AL M++ P+V + +IN L
Sbjct: 279 LDEMARKGFSPDFHTYNI--LLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLINGL 336
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
R GN + ++ +++ G C PDV YT++I+S+ + G
Sbjct: 337 SRAGNLDACKYFFDELGNNG--CIPDVVCYTVMITSFTEAGQH 377
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
+R N+ F E+ NG + T +I E G +A A F M P
Sbjct: 337 SRAGNLDACKYFFDELG--NNGCIPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKGQLP 394
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
+V+ YN +I C VG F +A +L +ME G C P+ Y+ L+S
Sbjct: 395 NVFTYNSMIRGFCMVGKFKEAYSMLSEMESRG--CRPNFLVYSTLVS 439
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V +G+ + L M G G V T LI L G ++ F + C
Sbjct: 300 VLGKGDKPLAALNLLNHMREVGFGPNVLH--FTTLINGLSRAGNLDACKYFFDELGNNGC 357
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV Y V+I + G KAR ++M + G P+V+TY +I +C G
Sbjct: 358 IPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKG--QLPNVFTYNSMIRGFCMVG 410
>gi|449446161|ref|XP_004140840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g55630-like [Cucumis sativus]
Length = 476
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 4/139 (2%)
Query: 117 EFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLI 176
+F+ W R ++ H + + +FA K +W L EM+ +G VT T LI
Sbjct: 136 KFFIWSGRIENYRHTVNSYHIIMKIFAECEEFKAMWRVLDEMTEKGYP--VTARTFMILI 193
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
GE GL + F + K F RP ++YN +++ L V + ++ +QM L
Sbjct: 194 CTCGEAGLAKRVVERFIKSKTFNFRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDH- 252
Query: 237 CPPDVYTYTILISSYCKYG 255
PD+ TY +L+ S CK G
Sbjct: 253 -SPDILTYNVLLFSSCKLG 270
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L EM+R+G T + L+ VLG+ AL M++ P+V + +IN L
Sbjct: 279 LDEMARKGFSPDFHTYNI--LLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLINGL 336
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
R GN + ++ +++ G C PDV YT++I+S+ + G
Sbjct: 337 SRAGNLDACKYFFDELGNNG--CIPDVVCYTVMITSFTEAGQH 377
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
+R N+ F E+ NG + T +I E G +A A F M P
Sbjct: 337 SRAGNLDACKYFFDELG--NNGCIPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKGQLP 394
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
+V+ YN +I C VG F +A +L +ME G C P+ Y+ L+S
Sbjct: 395 NVFTYNSMIRGFCMVGKFKEAYSMLSEMESRG--CRPNFLVYSTLVS 439
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V +G+ + L M G G V T LI L G ++ F + C
Sbjct: 300 VLGKGDKPLAALNLLNHMREVGFGPNVLH--FTTLINGLSRAGNLDACKYFFDELGNNGC 357
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV Y V+I + G KAR ++M + G P+V+TY +I +C G
Sbjct: 358 IPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKG--QLPNVFTYNSMIRGFCMVG 410
>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 566
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK + + G V +AL RM +F C PD +N+++N LCR +K R +L +++ G
Sbjct: 240 VIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDG 299
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+V TYT +IS YCK G
Sbjct: 300 V-CMPNVVTYTSVISGYCKAG 319
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 66/146 (45%), Gaps = 8/146 (5%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIV--FARGNNVKGLWDFLKEMSRRGNGELVTT 169
+ KA E VER F + T +V R V + L+ + R G +
Sbjct: 250 VQKALEL---VERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVC-MPNV 305
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T T +I + G + +A+A + M P+V YNV+IN + GN A + +Q
Sbjct: 306 VTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQ 365
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M L RC PDV T++ LI YC+ G
Sbjct: 366 MIL--RRCLPDVVTFSSLIDGYCRCG 389
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRC-RPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L+ + G V +A+A F Q PDV+++NVVI +C+VG+ KA L+E+M+
Sbjct: 204 LMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVERMD-- 261
Query: 234 GFRCPPDVYTYTILISSYCK 253
F C PD T+ IL++ C+
Sbjct: 262 EFGCSPDTVTHNILVNGLCR 281
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 11/166 (6%)
Query: 88 DNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN 147
D + +N+LV G + ++K E ++R N VT + + +
Sbjct: 268 DTVTHNILVNGLCRAKE-------VSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGR 320
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
++ +M G V T V LI G+ G + A+A + +M RC PDV +
Sbjct: 321 MEDAMAVYNDMVAVGTSPNVVTYNV--LINGYGKAGNMGSAVAVYQQMILRRCLPDVVTF 378
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ +I+ CR G + A + +M + P+ +T+ I+I ++CK
Sbjct: 379 SSLIDGYCRCGQLDDAMKIWTEMA--QYHIQPNAHTFCIIIHTFCK 422
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMK-QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T +I ++ EAL +M + P + YN VI+ LC+ G ++A +L +
Sbjct: 412 TFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIE 471
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
ME G C PD YTYTILI +C G
Sbjct: 472 MEEKG--CRPDKYTYTILIIGHCMKG 495
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + N FLK+M+ R ++ + + +I VL + G V+EA M++ C
Sbjct: 420 FCKQNRSGEALHFLKKMNMRT--DIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGC 477
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
RPD Y Y ++I C G +A +M G C PD IS K GM
Sbjct: 478 RPDKYTYTILIIGHCMKGRIAEAVTFFHKMVETG--CSPDSIVVNSFISCLLKSGM 531
>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g74580-like [Cucumis
sativus]
Length = 877
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+K L ++GLV +AL M + C PD++ YN+V+N LC++G + A +L G
Sbjct: 397 LVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKG 456
Query: 235 FRCPPDVYTYTILISSYCK 253
C PD++T+ LI YCK
Sbjct: 457 --CIPDIFTFNTLIDGYCK 473
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A + ++ V+ F H T K M + + D L EM + + +++ +
Sbjct: 23 ALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIG- 81
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++ G +G V EA+ F RM + C P V +YN ++N L G F++A + +M+ G
Sbjct: 82 IMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG 141
Query: 235 FRCPPDVYTYTILISSYCKYGMQT 258
PDVYT+TI + S+C G T
Sbjct: 142 IY--PDVYTHTIRMKSFCITGRPT 163
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + V + KEM RG ++VT T+ C + GE E T K+++
Sbjct: 541 FCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIE--KEYKF 598
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+N++INA C N + A L +M G C PD YTY ++I SYCK G
Sbjct: 599 SYSTAIFNIMINAFCXKLNVSMAEKLFHKM--GGSDCAPDNYTYRVMIDSYCKTG 651
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI VL ++G V E+ F ++ + P+++ +N+ I LCR G ++A LLE + G
Sbjct: 222 LIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEG 281
Query: 235 FRCPPDVYTYTILISSYCKY 254
PDV +Y LI +CK+
Sbjct: 282 L--TPDVISYNTLICGFCKH 299
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G++N+A+A C PD++ +N +I+ C+ N +KA +L+ M G PDV
Sbjct: 447 GILNDAIAK-------GCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGI--TPDVI 497
Query: 243 TYTILISSYCK 253
TY L++ CK
Sbjct: 498 TYNTLLNGLCK 508
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+ M PDV YN ++N LC+ + + M G C P++ TY
Sbjct: 477 MDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKG--CTPNIITY 534
Query: 245 TILISSYCK 253
ILI S+CK
Sbjct: 535 NILIESFCK 543
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
EA ++M P+ + YN +IN C+ G A +L GF PD +TY+
Sbjct: 304 EAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGF--IPDEFTYSS 361
Query: 247 LISSYCKYG 255
LI+ C G
Sbjct: 362 LINGLCNDG 370
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T I+ L +G ++EA + PDV +YN +I C+ +A L +M
Sbjct: 253 TFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKM 312
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
G P+ +TY +I+ +CK GM
Sbjct: 313 VNSGVE--PNEFTYNTIINGFCKAGM 336
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+ + ++ +L E G ++A + RMK PDVY + + + + C G A LL
Sbjct: 110 SVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLL 169
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
M PG C + +Y +IS + K Q
Sbjct: 170 NNM--PGQGCEFNAVSYCAVISGFYKENCQ 197
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++ + TF M + C P++ YN++I + C+ ++A L ++M+ G PD+ T
Sbjct: 512 LDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGL--TPDIVTL 569
Query: 245 TILISSYCKYG 255
LI C G
Sbjct: 570 CTLICGLCSNG 580
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR-FLLEQME---LPGF 235
V+ A F++M C PD Y Y V+I++ C+ GN + A FLLE + +P F
Sbjct: 618 VSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSF 672
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 187 EALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
EA F M KQ C PD+ +N +I+ LC+ GN ++ L ++ G P+++T+
Sbjct: 199 EAYHLFDEMLKQGIC-PDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGV--CPNLFTFN 255
Query: 246 ILISSYCKYG 255
I I C+ G
Sbjct: 256 IFIQGLCRKG 265
>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Glycine max]
Length = 623
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 103/242 (42%), Gaps = 18/242 (7%)
Query: 16 QQVLPLI--LKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFR 73
Q VL L+ L+N P LA S+ + + S + I R SP R T F
Sbjct: 75 QLVLHLLSHLQNHPHSLDLATSSLAICVLYRLPSPKPSINLIQRLIL-SPTCTNR-TIFD 132
Query: 74 HRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEV 133
+ R+ K + ++LV + P N+A E ++ ++ F N
Sbjct: 133 ELALARDRVDAKTT--LIFDLLVRAYCELKKP-------NEALECFYLIKEK-GFVPNIE 182
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193
TC +M +F + N + W EM R + T + +I VL +EG + +A
Sbjct: 183 TCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNI--MINVLCKEGKLKKAKEFIG 240
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
M+ +P+V YN +I+ C G F +AR + + M+ G PD YTY IS CK
Sbjct: 241 HMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLE--PDCYTYNSFISGLCK 298
Query: 254 YG 255
G
Sbjct: 299 EG 300
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R + K + L EM G G T T T LI VLG+ + EA A F +++Q
Sbjct: 401 YCRCGDAKRAFGLLDEMV--GKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLL 458
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ +N +I+ C GN ++A LL++M+ + PD TY L+ YC+ G
Sbjct: 459 PDIIVFNALIDGHCANGNIDRAFQLLKEMD--NMKVLPDEITYNTLMQGYCREG 510
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + + ++ + + EM +G + + T I L EG + +A
Sbjct: 320 NAVTYNALIDGYCNKGDLDKAYAYRDEMISKGI--MASLVTYNLFIHALFMEGRMGDADN 377
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
M++ PD +N++IN CR G+ +A LL++M G + P + TYT LI
Sbjct: 378 MIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQ--PTLVTYTSLI 433
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
N+ + LKEM L T L++ EG V EA MK+ +PD +
Sbjct: 476 NIDRAFQLLKEMDNMK--VLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHIS 533
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN +I+ + G+ A + ++M GF P + TY LI CK
Sbjct: 534 YNTLISGYSKRGDMKDAFRVRDEMMTTGF--DPTILTYNALIQGLCK 578
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ R + + D L+EM G + T T+ I+VLG G +++A M+
Sbjct: 235 VALGRRRDTGTIMDLLEEMETLGLRPNIYTYTIC--IRVLGRAGRIDDAYGILKTMEDEG 292
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C PDV Y V+I+ALC G +KA+ L +M + PD+ TY L+S + YG
Sbjct: 293 CGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHK--PDLVTYITLMSKFGNYG 346
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V R + + LK M G G V T TV LI L G +++A + +M+
Sbjct: 271 VLGRAGRIDDAYGILKTMEDEGCGPDVVTYTV--LIDALCAAGKLDKAKELYTKMRASSH 328
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD+ Y +++ G+ + +ME G+ PDV TYTIL+ + CK G
Sbjct: 329 KPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGY--APDVVTYTILVEALCKSG 381
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+ VT M +++ + L EM G + V LI L + G V+EA
Sbjct: 506 DSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIV--VNSLIDTLYKAGRVDEAWQ 563
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F R+K + P V YN++I L + G KA L M+ G CPP+ T+ L+
Sbjct: 564 MFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESG--CPPNTVTFNALLDC 621
Query: 251 YCK 253
CK
Sbjct: 622 LCK 624
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LI L + G EA+ F M ++C+P+ YN++IN + GN N A L
Sbjct: 892 TPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLF 951
Query: 228 EQMELPGFRCPPDVYTYTILI 248
++M G R PD+ +YTIL+
Sbjct: 952 KRMIKEGIR--PDLKSYTILV 970
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + NV D K M + G + + T+ L++ L G V++A+ F +K
Sbjct: 938 FGKAGNVNIACDLFKRMIKEGIRPDLKSYTI--LVECLFMTGRVDDAVHYFEELKLTGLD 995
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD +YN++IN L + +A L +M+ G P++YTY LI + GM
Sbjct: 996 PDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGIS--PELYTYNALILHFGNAGM 1048
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LI LG+EG + +AL F MK+ C P+ +N +++ LC+ + A +
Sbjct: 576 TVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMF 635
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M + C PDV TY +I K G
Sbjct: 636 CRMTI--MNCSPDVLTYNTIIYGLIKEG 661
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T + +I LG+ + EAL+ F MK P++Y YN +I G ++A + E
Sbjct: 998 TVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFE 1057
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+++ G P+V+TY LI + K G
Sbjct: 1058 ELQFMGLE--PNVFTYNALIRGHSKSG 1082
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G ++ + LI L + G EAL + RM +P + Y+ ++ AL R +
Sbjct: 184 RQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDT 243
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILI 248
LLE+ME G R P++YTYTI I
Sbjct: 244 GTIMDLLEEMETLGLR--PNIYTYTICI 269
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
+ + L++ EM RG + T + +I L + +N+AL +Y + P
Sbjct: 834 GKSKRIDELFELYNEMLCRGCKPNIITHNI--IISALVKSNSINKALDLYYEIISGDFSP 891
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +I L + G +A + E+M P ++C P+ Y ILI+ + K G
Sbjct: 892 TPCTYGPLIGGLLKAGRSEEAMKIFEEM--PDYQCKPNCAIYNILINGFGKAG 942
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T L+ L + V+ AL F RM C PDV YN +I L + G A +
Sbjct: 612 TVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYH 671
Query: 229 QMELPGFRCPPDVYTYTIL 247
QM+ F P V YT+L
Sbjct: 672 QMK--KFLSPDHVTLYTLL 688
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKV--LGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
D ++M +RG + S C + L E G + EA F + PD YN++
Sbjct: 458 DTFEKMKKRG----IMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMM 513
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ + G +KA LL +M G C PD+ LI + K G
Sbjct: 514 MKCYSKAGQIDKATKLLTEMLSEG--CEPDIIVVNSLIDTLYKAG 556
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T + CL+ L + AL F MK C P+++ YN++++A + ++ L
Sbjct: 787 TPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELY 846
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
+M G C P++ T+ I+IS+ K
Sbjct: 847 NEMLCRG--CKPNIITHNIIISALVK 870
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
EM RG + EL T + LI G G+V++A F ++ P+V+ YN +I
Sbjct: 1020 LFSEMKNRGISPELYTYNA---LILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIR 1076
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
+ GN ++A + ++M + G C P+ T+ L
Sbjct: 1077 GHSKSGNKDRAFSVFKKMMIVG--CSPNAGTFAQL 1109
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T ++K + G +++A M C PD+ N +I+ L + G ++A + +
Sbjct: 509 TYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGR- 567
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L + P V TY ILI+ K G
Sbjct: 568 -LKDLKLAPTVVTYNILITGLGKEG 591
>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
Length = 500
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL+EM+ R V T TV LI L + G V+EA+A +M++ +C P YN +I+
Sbjct: 68 FLEEMANRNLTPNVVTYTV--LIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISG 124
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC+ ++A LLE+M G C PD++TYT LI+ +CK
Sbjct: 125 LCKAERASEAYDLLEEMVYSG--CIPDIFTYTTLITGFCK 162
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T +CLI L +EG + EA+ F RM K C P+ YN +I+ CR+G ++A LLE+
Sbjct: 187 TYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLER 246
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
M G PDV TYT L++ +CK
Sbjct: 247 MAETGS--SPDVVTYTTLMNGFCK 268
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 8/113 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + +D L +M+R+G V T T L+ L E +++A+ M++ C
Sbjct: 266 FCKLARLDDAYDLLNQMTRKGLTPDVVT--FTSLMDGLCRENRLSDAVHILGEMRRKSCS 323
Query: 202 PDVYAYNVVINALCRVGNFNKAR-FLLEQMELPGFRCPPDVYTYTILISSYCK 253
P VY YN +++ CR +AR F+LE+M+ CPP+V ++ I+I CK
Sbjct: 324 PTVYTYNTILDGYCRANQLEEARKFMLEEMD-----CPPNVVSFNIMIRGLCK 371
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ +K D M + G+ + T T LI G ++EA+ RM +
Sbjct: 195 LCKEGRLKEAIDLFGRMIKSGSC-MPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSS 253
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDV Y ++N C++ + A LL QM G PDV T+T L+ C+
Sbjct: 254 PDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL--TPDVVTFTSLMDGLCR 303
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ L + + +AL +M PDVY Y VI+ALC ++AR LE+M
Sbjct: 13 TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
P+V TYT+LI CK G
Sbjct: 73 ANRNL--TPNVVTYTVLIDGLCKGG 95
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELP 233
+I+ L + +EA+ ++ RC PDV Y VI+ LCR ++A R + +E P
Sbjct: 365 MIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEP 424
Query: 234 GFRCPPDVYTYTILISSYCKYGM 256
G C P+ TY+ L++ C GM
Sbjct: 425 G--CLPNSITYSTLVTGLCNAGM 445
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+G V L +M ++ + T T LI L + +EA M C
Sbjct: 91 LCKGGRVDEAVALLSKMRKKC---VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCI 147
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD++ Y +I C+ + A + EQ+ GFR PDV TY+ LI CK G
Sbjct: 148 PDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR--PDVVTYSCLIDGLCKEG 199
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+D L+EM +G + T T LI + ++AL F ++ RPDV Y+ +I
Sbjct: 135 YDLLEEMVY--SGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 192
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ LC+ G +A L +M G C P+ TY LIS +C+ G
Sbjct: 193 DGLCKEGRLKEAIDLFGRMIKSG-SCMPNTVTYNSLISGFCRMG 235
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I L E ++EA M P+V Y V+I+ LC+ G ++A LL +M
Sbjct: 48 TYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM 107
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+C P TY LIS CK
Sbjct: 108 RK---KCVPTAVTYNSLISGLCK 127
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 4/142 (2%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+ +A + + + + N VT + F R + + L+ M+ G+ V T T
Sbjct: 201 LKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYT 260
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
L+ + +++A +M + PDV + +++ LCR + A +L +M
Sbjct: 261 T--LMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMR 318
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
C P VYTY ++ YC+
Sbjct: 319 RKS--CSPTVYTYNTILDGYCR 338
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 160 RRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVG 218
RR N ++V +TV I L E V+EA + +M ++ C P+ Y+ ++ LC G
Sbjct: 388 RRCNPDVVMYTTV---IDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAG 444
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
++AR +E+ C P++ TY +LI ++
Sbjct: 445 MLDRARGYIEK------GCVPNIGTYNLLIDAF 471
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C D Y +I LC+V +A L +M GF PDVYTYT +I + C
Sbjct: 7 CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFH--PDVYTYTAVIHALC 57
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 154 FLKEMSRRGN--GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
L++M G+ ++VT STV I L + ++ EA RM + C PDV Y +I
Sbjct: 411 ILEQMQESGDVLPDVVTYSTV---INGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTII 467
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ LC+ G +A +LL+ M+ G C P+V TYT LIS CK
Sbjct: 468 DGLCKCGRLEEAEYLLQGMKRAG--CAPNVVTYTTLISGLCK 507
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 156 KEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
++M RR G T V + +I + G + EA T M++ R PDV YN VI+
Sbjct: 339 EQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDG 398
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC++G +A+ +LEQM+ G PDV TY+ +I+ CK M
Sbjct: 399 LCKLGKIAEAQVILEQMQESG-DVLPDVVTYSTVINGLCKSDM 440
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
A ++ G D L+ M N T T LI + EA+ M++ C
Sbjct: 156 AMANAGDLDGAMDHLRSMGCDPN-----VVTYTALIAAFARAKKLEEAMKLLEEMRERGC 210
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++ YNV+++ALC++ A+ ++++M GF P+V T+ L+ +CK G
Sbjct: 211 PPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGF--APNVMTFNSLVDGFCKRG 263
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + FAR ++ L+EM RG + T V L+ L + +V A
Sbjct: 178 NVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNV--LVDALCKLSMVGAAQD 235
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+M + P+V +N +++ C+ GN + AR LL M G R P+V TY+ LI
Sbjct: 236 VVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMR--PNVVTYSALIDG 293
Query: 251 YCK 253
CK
Sbjct: 294 LCK 296
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 153 DFLKEMSRRGNGELVTTS--TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+ L+EM RG VT T + LI L + + EA RM C PDV Y+ +
Sbjct: 305 EVLEEMKTRG----VTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSI 360
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I+A C+ G +A+ L++M R PDV TY +I CK G
Sbjct: 361 IHAFCKSGKLLEAQKTLQEMRKQ--RKSPDVVTYNTVIDGLCKLG 403
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L M + G N ++VT +T+ I L + G + EA MK+ C P+V Y +I+
Sbjct: 447 LLDRMCKAGCNPDVVTYTTI---IDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLIS 503
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ ++A ++E+M G CPP++ TY +++ C G
Sbjct: 504 GLCKARKVDEAERVMEEMRNAG--CPPNLVTYNTMVNGLCVSG 544
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C PDV +YN+VI+ C G+ + A LLE+M+ GF PD +T+T +I++ G
Sbjct: 108 CEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGF--APDAFTHTPIITAMANAG 161
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F ++ + L+EM G T T +I + G ++ A+ ++ C
Sbjct: 122 FCNAGDLHAALELLEEMKSAGFAPDAFTHTP--IITAMANAGDLDGAMD---HLRSMGCD 176
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P+V Y +I A R +A LLE+M G CPP++ TY +L+ + CK M
Sbjct: 177 PNVVTYTALIAAFARAKKLEEAMKLLEEMRERG--CPPNLVTYNVLVDALCKLSM 229
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+ M R G V T T LI L + V+EA M+ C P++ YN ++N
Sbjct: 482 LLQGMKRAGCAPNVVTYTT--LISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNG 539
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
LC G +A+ L+++M+ C PD TY ++++
Sbjct: 540 LCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNA 576
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + NV L M +G V T + LI L + EA MK
Sbjct: 259 FCKRGNVDDARKLLGIMVAKGMRPNVVTYSA--LIDGLCKSQKFLEAKEVLEEMKTRGVT 316
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD + Y+ +I+ LC+ +A +L +M G C PDV Y+ +I ++CK G
Sbjct: 317 PDAFTYSALIHGLCKADKIEEAEQMLRRM--AGSGCTPDVVVYSSIIHAFCKSG 368
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
V D +K+M G V T L+ + G V++A M RP+V Y
Sbjct: 230 VGAAQDVVKKMIEGGFAPNVMT--FNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTY 287
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ +I+ LC+ F +A+ +LE+M+ G PD +TY+ LI CK
Sbjct: 288 SALIDGLCKSQKFLEAKEVLEEMKTRGV--TPDAFTYSALIHGLCK 331
>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Glycine max]
Length = 564
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
++ F++W F + EM + + W + M RG +T T +
Sbjct: 160 QSLAFFNWSSSLDGFPASPEPYNEMLDLAGKLRQFDLAWHVIDLMKSRGVE--ITVHTFS 217
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L++ GL EA+ F RM+ + C PD+ A+++VI++LC+ N+A+ + ++
Sbjct: 218 ALVRRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLK-- 275
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
R PDV YT L+ +C+ G
Sbjct: 276 -HRFEPDVVVYTSLVHGWCRAG 296
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R N + +D LK R ++V T L+ G +++A F MK +P+
Sbjct: 263 RANEAQSFFDSLKH---RFEPDVVV---YTSLVHGWCRAGDISKAEEVFSDMKMAGIKPN 316
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
VY Y++VI++LCR G +A + +M G C P+ T+ L+ + K G
Sbjct: 317 VYTYSIVIDSLCRCGQITRAHDVFSEMIDAG--CDPNAVTFNSLMRVHVKAG 366
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R N++ L M ++G ST + + + VN A + RMK+ C+P+
Sbjct: 399 RDENLEEAAKILNLMVKKGVAP--NASTFNFIFGCIAKLHDVNGAHRMYARMKELNCQPN 456
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
YN+++ + + L + E+ + P+V TY ILIS +C
Sbjct: 457 TLTYNILMRMFAESRSTDMV--LKMKKEMDESQVEPNVNTYRILISMFC 503
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R ++ + +M G V T ++ +I L G + A F M C
Sbjct: 292 WCRAGDISKAEEVFSDMKMAGIKPNVYTYSI--VIDSLCRCGQITRAHDVFSEMIDAGCD 349
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+ +N ++ + G K + QM+ G CP D +Y +I S+C+
Sbjct: 350 PNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLG--CPADTISYNFIIESHCR 399
Score = 36.6 bits (83), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L++V + G + L + +MK+ C D +YN +I + CR N +A +L M
Sbjct: 354 TFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESHCRDENLEEAAKILNLM 413
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G P+ T+ + K
Sbjct: 414 VKKGV--APNASTFNFIFGCIAK 434
>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 718
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+E+T + F ++ G K+M G G L+T +V L+ +EG V EAL
Sbjct: 192 DEITFTTLMQGFIEEGDLNGALKMKKQM--LGYGCLLTNVSVKVLVNGFCKEGRVEEALR 249
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+ + PD +N ++N CR+GN N A +++ M GF PDVYTY LIS
Sbjct: 250 FVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGF--DPDVYTYNSLISG 307
Query: 251 YCKYG 255
CK G
Sbjct: 308 MCKLG 312
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V+ F+ E+S G T L+ G VN+AL M +
Sbjct: 238 FCKEGRVEEALRFVLEVSEEGFSP--DQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFD 295
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDVY YN +I+ +C++G F KA +L+QM L C P+ TY LIS+ CK
Sbjct: 296 PDVYTYNSLISGMCKLGEFEKAIEILQQMILR--ECSPNTVTYNTLISALCK 345
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 167 VTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
V+ S+VT LI L + V EA +M +PD + YN ++ CRVG+ KA
Sbjct: 469 VSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAG 528
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+++ M G C PD++TY LI C+ G
Sbjct: 529 DIVQTMASNG--CEPDIFTYGTLIGGLCRAG 557
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 9/148 (6%)
Query: 111 GINKATEFYHWVERFFHFF-----HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE 165
G+ K EF +E N VT + + N ++ D + + +G
Sbjct: 307 GMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKG--L 364
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
L T LI+ L + A+ F MK C+PD + Y+++I++LC +A
Sbjct: 365 LPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALM 424
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCK 253
LL++ME G C + Y LI CK
Sbjct: 425 LLKEMESSG--CARNAVVYNTLIDGLCK 450
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
LKEM G LI L + + +A F +M+ YN +I+
Sbjct: 425 LLKEMESSGCAR--NAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDG 482
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ +A L++QM + G + PD +TY L++ +C+ G
Sbjct: 483 LCKNKRVEEASQLMDQMIMEGLK--PDKFTYNSLLTYFCRVG 522
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L E + EAL M+ C + YN +I+ LC+ A + +QM
Sbjct: 405 TYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQM 464
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
EL G TY LI CK
Sbjct: 465 ELLGVS--RSSVTYNTLIDGLCK 485
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 4/125 (3%)
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187
F ++VT + F R NV D + M +G V T LI + + G +
Sbjct: 259 FSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYT--YNSLISGMCKLGEFEK 316
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ +M C P+ YN +I+ALC+ A L + G PDV T+ L
Sbjct: 317 AIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLL--PDVCTFNTL 374
Query: 248 ISSYC 252
I C
Sbjct: 375 IQGLC 379
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + +A M C PD++ Y +I LCR G + A LL +++ G P Y
Sbjct: 522 GDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAY 581
Query: 243 TYTI 246
I
Sbjct: 582 NPVI 585
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
DV +NV+I ALC+ A +LE+M G + PD T+T L+ + + G
Sbjct: 157 DVSTFNVLIKALCKAHQLRPAILMLEEMANHGLK--PDEITFTTLMQGFIEEG 207
>gi|168040538|ref|XP_001772751.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675976|gb|EDQ62465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 526
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI LGE G +N+AL TF RM C PD YNVVIN L VG + A L EQM+ G
Sbjct: 388 LIYQLGEAGRINDALKTFERMCSESCYPDTRTYNVVINLLGGVGKVDLAHQLFEQMKEKG 447
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P++ TY I++ + G
Sbjct: 448 --CKPNLQTYNIMVGHLVRAG 466
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
LW L +M R +G VT + +I+ + + ++L TF+ M ++ C+P YN +
Sbjct: 18 LWALLDDMKR--DGHRVTPTIFLGVIRSYVKANQIEDSLKTFHAMDKYDCKPTTLVYNSM 75
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I+ L G++ +A L M P C PD TYT++I K G
Sbjct: 76 IDILRTSGDYVQAEKLFRSMN-PS-SCAPDTITYTMMIDCMGKAG 118
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
TT +I +L G +A F M C PD Y ++I+ + + G+ A L
Sbjct: 68 TTLVYNSMIDILRTSGDYVQAEKLFRSMNPSSCAPDTITYTMMIDCMGKAGHIQAAFDLF 127
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++M G++ +V TY+ LI S CK G
Sbjct: 128 QEMHRMGYK--ANVITYSSLIRSLCKAG 153
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T +I +LG G V+ A F +MK+ C+P++ YN+++ L R G + L
Sbjct: 417 TRTYNVVINLLGGVGKVDLAHQLFEQMKEKGCKPNLQTYNIMVGHLVRAGRYQLGPKLCR 476
Query: 229 QM 230
+M
Sbjct: 477 EM 478
>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 894
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L + T LI E G ++EAL F++MK+ C PDV Y V++ A C VG +A
Sbjct: 255 GCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEA 314
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
E+M G P+VYTYT+LI +CK G
Sbjct: 315 LKFFEEMVENGIE--PNVYTYTVLIDYFCKVG 344
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L +EG V +A++ M +F +P V+ Y ++I + R +F++A L+QM
Sbjct: 542 TFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQM 601
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P+V TYT I +YC+ G
Sbjct: 602 ISSG--CQPNVVTYTAFIKAYCRQG 624
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ +G T T L+ E G EAL F M + P+VY Y V+I+ C+VG
Sbjct: 287 KEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKM 346
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
++ +L M G V + LI YCK GM
Sbjct: 347 DEGMEMLSTMLEKGL--VSSVVPFNALIDGYCKRGM 380
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+ +A F M Q C + +Y +I+ C VG ++A L QM+ G C PDV TY
Sbjct: 241 LGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDG--CFPDVPTY 298
Query: 245 TILISSYCKYGMQT 258
T+L++++C+ G +T
Sbjct: 299 TVLVAAFCEVGKET 312
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L VL GL++E F M P++ ++N ++NA C++GN A+ + G
Sbjct: 161 LFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFG 220
Query: 235 FRCPPDVYTYTILISSYCK 253
F C D +TYT LI YCK
Sbjct: 221 FCC--DSFTYTSLILGYCK 237
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F +M + C P+V Y+ +I LC+V + + A L M+ G P + L+SS
Sbjct: 729 FEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGI--SPSENIHNSLLSSC 786
Query: 252 CKYGMQ 257
CK GM
Sbjct: 787 CKLGMH 792
>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
Length = 1245
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T+T LIK L EG V+EA+ RM + C+PDV YN ++N +CR G+ + A LL
Sbjct: 148 TTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLR 207
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+ME + DV+TY+ +I S C+ G
Sbjct: 208 KMEERNVK--ADVFTYSTIIDSLCRDG 232
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R + D L++M R ++ T ST+ I L +G ++ A++ F M+
Sbjct: 193 ICRSGDTSLALDLLRKMEERNVKADVFTYSTI---IDSLCRDGCIDAAISLFKEMETKGI 249
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ V YN ++ LC+ G +N LL+ M P+V T+ +L+ + K G
Sbjct: 250 KSSVVTYNSLVRGLCKAGKWNDGALLLKDM--VSREIVPNVITFNVLLDVFVKEG 302
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T ++ + G + AL +M++ + DV+ Y+ +I++LCR G + A L ++M
Sbjct: 185 TYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 244
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G + V TY L+ CK G
Sbjct: 245 ETKGIK--SSVVTYNSLVRGLCKAG 267
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 142 FARGNNVKGLWD----FLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMK 196
RG G W+ LK+M R E+V T L+ V +EG + EA + M
Sbjct: 259 LVRGLCKAGKWNDGALLLKDMVSR---EIVPNVITFNVLLDVFVKEGKLQEANELYKEMI 315
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P++ YN +++ C ++A +L+ M +C PD+ T+T LI YC
Sbjct: 316 TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRN--KCSPDIVTFTSLIKGYC 369
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + +K + +EM +G L T L+ L + G + +AL F +++ +
Sbjct: 403 FCQSGKIKLAEELFQEMV--SHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 460
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ Y +I +C+ G A L + G + P+V TYT++IS CK G
Sbjct: 461 LGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVK--PNVMTYTVMISGLCKKG 512
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I+ + + G V +A F + +P+V Y V+I+ LC+ G+ ++A LL +ME
Sbjct: 467 TTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 526
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G P+ TY LI ++ + G
Sbjct: 527 DGN--APNDCTYNTLIRAHLRDG 547
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
R + KEM +G + +S VT L++ L + G N+ M
Sbjct: 228 LCRDGCIDAAISLFKEMETKG----IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE 283
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P+V +NV+++ + G +A L ++M G P++ TY L+ YC
Sbjct: 284 IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGI--SPNIITYNTLMDGYC 334
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 122 VERFFHFFHNEVTCK-EMGIVF--------ARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
+E+ F + K ++GIV +G V+ W+ + +G V T TV
Sbjct: 444 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 503
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+I L ++G ++EA +M++ P+ YN +I A R G+ + L+E+M+
Sbjct: 504 --MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKS 561
Query: 233 PGF 235
GF
Sbjct: 562 CGF 564
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI L G EAL F MK+ C P+V+ Y V+I+ LC+ ++AR +L
Sbjct: 298 TVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKML 357
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
+M G P V TY LI YCK GM
Sbjct: 358 SEMSEKGL--IPSVVTYNALIDGYCKEGM 384
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI L E G +NEAL F M + C P V Y V+I AL G +A L +M+
Sbjct: 268 TNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKE 327
Query: 233 PGFRCPPDVYTYTILISSYCK 253
G C P+V+TYT+LI CK
Sbjct: 328 KG--CEPNVHTYTVLIDGLCK 346
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+ CKE R L+D +K + N E++ T+ + KV G ++ A +
Sbjct: 482 DTLCKE-----GRVEEAGTLFDSVKAKGVKAN-EVIYTALIDGYCKV----GKIDVAYSL 531
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
RM C P+ Y YNV+I LC+ +A L+ +M G + P V TYTILI
Sbjct: 532 LERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVK--PTVVTYTILIGEM 589
Query: 252 CKYG 255
K G
Sbjct: 590 LKDG 593
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N+++ + L M+ NG + T + I L +EG V EA F +K + +
Sbjct: 453 NDLESAYRLLSLMNE--NGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEV 510
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
Y +I+ C+VG + A LLE+M C P+ YTY +LI CK
Sbjct: 511 IYTALIDGYCKVGKIDVAYSLLERM--LNDACLPNSYTYNVLIEGLCK 556
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 154 FLKEMSRRGN--GELVTTSTVTC---LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
F+ E+ R+ N GE T+ C ++ L + L++E + + + P++Y +N
Sbjct: 139 FVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFN 198
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++N C++GN +A ++ G PD +TYT LI +C+
Sbjct: 199 AMVNGYCKIGNVVEAELYASKIVQAGLH--PDTFTYTSLILGHCR 241
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
G V+ L + EM +G V T TV LI L +E ++EA M + P
Sbjct: 311 GSGRKVEAL-NLFNEMKEKGCEPNVHTYTV--LIDGLCKENKMDEARKMLSEMSEKGLIP 367
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
V YN +I+ C+ G + A +L+ ME C P+ TY LI CK
Sbjct: 368 SVVTYNALIDGYCKEGMIDDAFEILDLME--SNSCGPNTRTYNELICGLCK 416
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ N + L EMS +G + + T LI +EG++++A M+ C
Sbjct: 344 LCKENKMDEARKMLSEMSEKG--LIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCG 401
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+ YN +I LC+ +KA LL +M + P + TY LI CK
Sbjct: 402 PNTRTYNELICGLCKKRKVHKAMALLNKM--LERKLSPSLITYNSLIHGQCK 451
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI L ++ V++A+A +M + + P + YN +I+ C+V + A LL
Sbjct: 404 TRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLS 463
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
M G PD +TY++ I + CK G
Sbjct: 464 LMNENGL--VPDQWTYSVFIDTLCKEG 488
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI + ++G + AL F M +PDV Y ++A G + ++
Sbjct: 578 TVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVI 637
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
+M G PD+ TYT+LI Y + G+
Sbjct: 638 AKMNEEGIL--PDLVTYTVLIDGYARLGL 664
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+ A F M Q C+ + +Y +I+ LC G N+A L M C P V TY
Sbjct: 245 VDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTED--NCCPTVRTY 302
Query: 245 TILISSYCKYG 255
T+LI + G
Sbjct: 303 TVLIYALSGSG 313
>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
Length = 500
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL+EM+ R V T TV LI L + G V+EA+A +M++ +C P YN +I+
Sbjct: 68 FLEEMANRNLTPNVVTYTV--LIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISG 124
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC+ ++A LLE+M G C PD++TYT LI+ +CK
Sbjct: 125 LCKAERASEAYDLLEEMVYSG--CIPDIFTYTTLITGFCK 162
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T +CLI L +EG + EA+ F RM K C P+ YN +I+ CR+G ++A LLE+
Sbjct: 187 TYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLER 246
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
M G PDV TYT L++ +CK
Sbjct: 247 MAETGS--SPDVVTYTTLMNGFCK 268
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 8/113 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + +D L +M+R+G V T T L+ L E +++A+ M++ C
Sbjct: 266 FCKLARLDDAYDLLNQMTRKGLTPDVVT--FTSLMDGLCRENRLSDAVHILGEMRRKSCS 323
Query: 202 PDVYAYNVVINALCRVGNFNKAR-FLLEQMELPGFRCPPDVYTYTILISSYCK 253
P VY YN +++ CR +AR F+LE+M+ CPP+V ++ I+I CK
Sbjct: 324 PTVYTYNTILDGYCRANQLEEARKFMLEEMD-----CPPNVVSFNIMIRGLCK 371
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELP 233
+I+ L + +EA+ ++ RC PDV Y VI+ LCR ++A R + +E P
Sbjct: 365 MIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEP 424
Query: 234 GFRCPPDVYTYTILISSYCKYGM 256
G C P+ TY+ LI+ C GM
Sbjct: 425 G--CLPNSITYSTLITGLCNAGM 445
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ +K D M + G+ + T T LI G ++EA+ RM +
Sbjct: 195 LCKEGRLKEAIDLFGRMIKSGSC-MPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSS 253
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDV Y ++N C++ + A LL QM G PDV T+T L+ C+
Sbjct: 254 PDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL--TPDVVTFTSLMDGLCR 303
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ L + + +AL +M PDVY Y VI+ALC ++AR LE+M
Sbjct: 13 TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
P+V TYT+LI CK G
Sbjct: 73 ANRNL--TPNVVTYTVLIDGLCKGG 95
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+G V L +M ++ + T T LI L + +EA M C
Sbjct: 91 LCKGGRVDEAVALLSKMRKKC---VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCI 147
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD++ Y +I C+ + A + EQ+ GFR PDV TY+ LI CK G
Sbjct: 148 PDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR--PDVVTYSCLIDGLCKEG 199
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+D L+EM +G + T T LI + ++AL F ++ RPDV Y+ +I
Sbjct: 135 YDLLEEMVY--SGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 192
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ LC+ G +A L +M G C P+ TY LIS +C+ G
Sbjct: 193 DGLCKEGRLKEAIDLFGRMIKSG-SCMPNTVTYNSLISGFCRMG 235
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I L E ++EA M P+V Y V+I+ LC+ G ++A LL +M
Sbjct: 48 TYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM 107
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+C P TY LIS CK
Sbjct: 108 RK---KCVPTAVTYNSLISGLCK 127
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 4/142 (2%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+ +A + + + + N VT + F R + + L+ M+ G+ V T T
Sbjct: 201 LKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYT 260
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
L+ + +++A +M + PDV + +++ LCR + A +L +M
Sbjct: 261 T--LMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMR 318
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
C P VYTY ++ YC+
Sbjct: 319 RKS--CSPTVYTYNTILDGYCR 338
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ +++ C P+V ++N++I LC+V ++A L+E E RC PDV YT +I C
Sbjct: 348 FMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVE--EARRRRCNPDVVMYTTVIDGLC 405
Query: 253 K 253
+
Sbjct: 406 R 406
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 160 RRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVG 218
RR N ++V +TV I L E V+EA + +M ++ C P+ Y+ +I LC G
Sbjct: 388 RRCNPDVVMYTTV---IDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAG 444
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
++AR +E+ C P++ TY +LI ++
Sbjct: 445 MLDRARGYIEK------GCVPNIGTYNLLIDAF 471
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C D Y +I LC+V +A L +M GF PDVYTYT +I + C
Sbjct: 7 CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFH--PDVYTYTAVIHALC 57
>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1188
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 4/143 (2%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
N F+ W + + H+ CK M + ++ +W ++EM R+ N EL+
Sbjct: 115 NLGYRFFLWATKQPGYCHSYEVCKSMVKILSKMRQFGAVWGLIEEM-RKENPELIEPELF 173
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
LI+ +V +A+ M ++ PD Y + +++ALC+ G+ A + E M
Sbjct: 174 VVLIRRFASANMVKKAVEVLDEMPKYGFEPDEYVFGCLLDALCKNGSVKDASKVFEDMR- 232
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+ PP++ +T L+ +C+ G
Sbjct: 233 --EKIPPNLRYFTSLLYGWCREG 253
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN-FNKARFLLEQME 231
T L+ G + +A M++ P+ Y V+I ALCR ++A + +ME
Sbjct: 278 TNLLSGYAHAGKMADAYDLLNDMRKRGYEPNANCYTVLIQALCRTEKRMDEAMRVFVEME 337
Query: 232 LPGFRCPPDVYTYTILISSYCKYGM 256
G C D+ TYT LIS +CK+GM
Sbjct: 338 RYG--CEADIVTYTALISGFCKWGM 360
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE-EGLVNEALATFYRMKQFRC 200
+A + +D L +M +RG + T LI+ L E ++EA+ F M+++ C
Sbjct: 284 YAHAGKMADAYDLLNDMRKRGYEP--NANCYTVLIQALCRTEKRMDEAMRVFVEMERYGC 341
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
D+ Y +I+ C+ G +K +L+ M G P V IL++
Sbjct: 342 EADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGV-MPSQVTYMQILVA 389
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG--LVNEALATFYRMKQFR 199
F + + + L +M ++G V S VT + ++ E E L +MKQ
Sbjct: 355 FCKWGMIDKGYSVLDDMRKKG----VMPSQVTYMQILVAHEKKEQFEECLELIEKMKQIG 410
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C PD+ YNVVI C +A L +ME G P + I+I+ + G
Sbjct: 411 CHPDLLIYNVVIRLACNFREVKEAVRLWNEMEANGL--SPGADMFVIMINGFTSQG 464
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ L + G ++EA A RM + C P++ YN +I+ C++G ++A LLE+M
Sbjct: 257 TYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEM 316
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P+V TYT+L+ ++CK G
Sbjct: 317 VDGG--CQPNVVTYTVLLDAFCKCG 339
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNG--ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
G + KEM G+ ++ T ST+ + L + G V++A M
Sbjct: 194 LCSGRKLDSALQLFKEMEESGSCPPDVFTYSTI---VDSLVKSGKVDDACRLVEAMVSKG 250
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+V Y+ +++ LC+ G ++A LL++M G C P++ TY +I +CK G
Sbjct: 251 CSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSG--CSPNIVTYNTIIDGHCKLG 304
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EMS+ + VT +T +I L + +++A+ M P+V++YN V++ C
Sbjct: 34 REMSKTCPPDSVTYNT---MINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFC 90
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ A +LLEQM + G CPPDV +YT +I+ CK
Sbjct: 91 KANRVENALWLLEQMVMRG--CPPDVVSYTTVINGLCK 126
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 40/150 (26%)
Query: 142 FARGNNVK-GLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F + N V+ LW L++M RG ++V+ +TV I L + V+EA +M Q
Sbjct: 89 FCKANRVENALW-LLEQMVMRGCPPDVVSYTTV---INGLCKLDQVDEACRVMDKMIQRG 144
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR----------------------- 236
C+P+V Y +++ CRVG+ + A L+ +M G+R
Sbjct: 145 CQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSAL 204
Query: 237 -----------CPPDVYTYTILISSYCKYG 255
CPPDV+TY+ ++ S K G
Sbjct: 205 QLFKEMEESGSCPPDVFTYSTIVDSLVKSG 234
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
C PD+ YN VI+ LC+ ++A L QM G PD TY+I+ISS CK+
Sbjct: 497 CSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL--APDDVTYSIVISSLCKW 549
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ + ++ V A M Q C P+V +YN VI LC+ ++ LLEQM
Sbjct: 362 TYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQM 421
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C PD+ T+ +I + CK
Sbjct: 422 --LSNNCVPDIVTFNTIIDAMCK 442
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L+ M+R G + +VT +T+ I + G ++EA M C+P+V Y V+++
Sbjct: 277 LLQRMTRSGCSPNIVTYNTI---IDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLD 333
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A C+ G A L+E M G+ P+++TY L+ +CK
Sbjct: 334 AFCKCGKAEDAIGLVEVMVEKGY--VPNLFTYNSLLDMFCK 372
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+ A F +++ C P++ YN +++ LC+ F++A +LL +M C PD+ TY
Sbjct: 446 VDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQ-GCSPDIITY 504
Query: 245 TILISSYCK 253
+I CK
Sbjct: 505 NTVIDGLCK 513
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 154 FLKEMSRRGNG--ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
L+EM+R+ +++T +TV I L + V+ A F +M PD Y++VI
Sbjct: 487 LLREMTRKQGCSPDIITYNTV---IDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVI 543
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++LC+ ++A +LE M GF P TY LI +CK G
Sbjct: 544 SSLCKWRFMDEANNVLELMLKNGF--DPGAITYGTLIDGFCKTG 585
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++ L + G ++A+ F M + C PD YN +IN L + + A LLE+M G
Sbjct: 16 ILRGLCDAGQCSDAVLHFREMSK-TCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNG 74
Query: 235 FRCPPDVYTYTILISSYCK 253
F P+V++Y ++ +CK
Sbjct: 75 F--APNVFSYNTVLHGFCK 91
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ L+EM G V T TV L+ + G +A+ M + P+++ YN ++
Sbjct: 310 YHLLEEMVDGGCQPNVVTYTV--LLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLL 367
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ C+ +A LL M G C P+V +Y +I+ CK
Sbjct: 368 DMFCKKDEVERACQLLSSMIQKG--CVPNVVSYNTVIAGLCK 407
>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
Length = 715
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+ V+ K M I + R + +LK+M RRG +V +T T +I E+G +
Sbjct: 230 DSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGF--VVDNATCTLMISTFCEKGFASRVFW 287
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F + + +P++ + +IN LC+ G+ +A +LE+M G++ P+VYT+T LI
Sbjct: 288 YFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWK--PNVYTHTALIDG 345
Query: 251 YCKYG 255
CK G
Sbjct: 346 LCKKG 350
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 42/217 (19%)
Query: 72 FRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATE--------FYHWVE 123
+ +TP R+L+ + N++ N P + + Q +T+ + A+E F++W
Sbjct: 79 YSQQTP-HVRLLQSPSINLSVN-----PDSLTHEQAITVVASLASEAGSMVALSFFNWAI 132
Query: 124 RF--FHFF--------------------HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRR 161
F F +F H + C M VFA + + + EM
Sbjct: 133 GFPKFRYFMRFYIVCATSFIGNENFERAHEVMDC--MVRVFAEIGKFQEAVNMVIEM--E 188
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
+G ++T T+ C+ V GE GLV A F M+ PD +Y ++ A CR+G +
Sbjct: 189 NHGLVLTVRTLNCVTGVAGEMGLVGYAENVFDEMRVRGVCPDSVSYKLMAIAYCRMGRIS 248
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
L+ M GF D T T++IS++C+ G +
Sbjct: 249 DTDRWLKDMVRRGF--VVDNATCTLMISTFCEKGFAS 283
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDV 204
++K ++ L+EM ++G V T T LI L ++G +A F ++ + +P+V
Sbjct: 315 GSIKQAFEMLEEMVKKGWKPNVYTHTA--LIDGLCKKGWTEKAFRLFLKLVRSDDYKPNV 372
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ Y +I+ C+ N+A LL +M+ G P+ TYT LI + K G
Sbjct: 373 HTYTSMIHGYCKEDKLNRAEMLLSRMKEQGL--VPNTKTYTCLIDGHSKAG 421
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I +E +N A RMK+ P+ Y +I+ + GNF KA L++ M
Sbjct: 374 TYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLM 433
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF +++TY I S CK G
Sbjct: 434 GKEGF--SANIFTYNAFIDSLCKKG 456
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ G + T T TCLI + G +A M + +++ YN I++LC+ G F
Sbjct: 399 KEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRF 458
Query: 221 NKARFLLEQMELPGFR--CPPDVYTYTILISSYCK 253
+A LL++ GFR D TYTILIS C+
Sbjct: 459 LEACKLLKK----GFRLGLQADTVTYTILISELCR 489
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G T T T LI L EAL F +M + +PD++ YN +I A R ++
Sbjct: 472 GLQADTVTYTILISELCRRADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEES 531
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
L E G P TYT +I YC+
Sbjct: 532 EKLFA--EAVGLGLVPTKETYTSMICGYCR 559
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G + T T T +I + V+ AL F RM C PD Y +I+ LC+ +
Sbjct: 540 GLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKESKLD 599
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+A L E M G P T L YCK
Sbjct: 600 EACQLYEAMVDKGL--SPCEVTRLTLAYEYCK 629
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
KGL F EM R NG L T LI + G ++EA M +P++ +YN
Sbjct: 28 KGLGCF-GEMER--NGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYN 84
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V+IN LCR G+ +A +LE+M GF PD TY L++ YCK G
Sbjct: 85 VIINGLCREGSMKEAWEILEEMGYKGF--TPDEVTYNTLLNGYCKEG 129
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
R ++K W+ L+EM +G T VT L+ +EG ++AL M +
Sbjct: 90 LCREGSMKEAWEILEEMGYKG----FTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNG 145
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P V Y +IN++C+ N N+A +QM + G R P+ TYT LI + + G+
Sbjct: 146 VSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLR--PNERTYTTLIDGFSRQGL 200
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M + R P+VY YN++I C VG K +ME G C P+V TY LI +YCK
Sbjct: 1 MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNG--CLPNVVTYNTLIDAYCKM 58
Query: 255 G 255
G
Sbjct: 59 G 59
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI+ G + + L F M++ C P+V YN +I+A C++G ++A LL+ M
Sbjct: 12 TYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSM 71
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + P++ +Y ++I+ C+ G
Sbjct: 72 SSKGMQ--PNLISYNVIINGLCREG 94
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + + + + + LK MS +G + + V +I L EG + EA
Sbjct: 44 NVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNV--IINGLCREGSMKEAWE 101
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M PD YN ++N C+ GNF++A + +M G P V TYT LI+S
Sbjct: 102 ILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGV--SPSVVTYTALINS 159
Query: 251 YCK 253
CK
Sbjct: 160 MCK 162
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI +GL+NEA M + P V YN I+ C + +A ++++M
Sbjct: 187 TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEM 246
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PDV +Y+ +IS +C+ G
Sbjct: 247 VEKGL--APDVVSYSTIISGFCRKG 269
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+N+A EF+ + R NE T + F+R + + L EM+ G V T
Sbjct: 166 LNRAMEFFDQM-RIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYN 224
Query: 172 V----TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
C+++ + EAL M + PDV +Y+ +I+ CR G ++A +
Sbjct: 225 AFIHGHCVLERM------EEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMK 278
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++M G PD TY+ LI C+
Sbjct: 279 QEMVEKGV--SPDAVTYSSLIQGLCE 302
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
F R + + +EM +G V+ VT LI+ L E + EA M
Sbjct: 265 FCRKGELDRAFQMKQEMVEKG----VSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMG 320
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD + Y +INA C G+ NKA L ++M GF PD TY++LI+ K
Sbjct: 321 LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFL--PDAVTYSVLINGLNK 372
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+V LIK +GL++EA F M + +P YNV+I+ CR GN KA L ++M
Sbjct: 412 SVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEM 471
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
GF P T LI + K GM
Sbjct: 472 IHSGF--VPHTVTVITLIKALFKEGM 495
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EM R NG + T T LI + + +N A+ F +M+ RP+ Y +I+ R
Sbjct: 140 EMVR--NGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSR 197
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
G N+A +L +M GF P V TY I +C
Sbjct: 198 QGLLNEAYRILNEMTESGF--SPSVVTYNAFIHGHC 231
>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M VF G KG F +E++ +G + + + LI L + GL NE FY MK+
Sbjct: 551 MDCVFKAGETEKGRALF-REIN--AHGFIPDARSYSILIHGLVKAGLANETYELFYAMKE 607
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C D +AYN VI+ C+ G NKA LLE+M++ G PP V TY +I K
Sbjct: 608 QGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGH--PPTVVTYGSVIDGLAK 661
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T CL+ L + +NEAL F MK +C P+ Y+++IN LCRV FNKA ++M
Sbjct: 721 TWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEM 780
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G + P+ TYT +IS K G
Sbjct: 781 QKLGLK--PNTITYTTMISGLAKAG 803
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 160 RRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
++ G + + C++ LG++ V EAL F MK+ P+V YN++I+ LCR G
Sbjct: 361 QKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKR-DAVPNVPTYNILIDMLCREGK 419
Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N A + + ME G P+V T I+I CK
Sbjct: 420 LNAALEIRDDMERAGLF--PNVLTVNIMIDRLCK 451
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ NG + + LI G+ G ++EA + Q P+VY +N +++AL +
Sbjct: 676 KSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEI 735
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N+A + M+ +CPP+ TY+ILI+ C+
Sbjct: 736 NEALICFQSMK--DLKCPPNQITYSILINGLCR 766
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V W F EM + +G + T T +I VL + ++EA+ F +++Q R
Sbjct: 275 FGKAGKVDMSWKFFHEM--KSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKV 332
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P YAYN +I G F++A LLE+ + G P V Y +++ K
Sbjct: 333 PCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKG--SIPSVIAYNCILTCLGK 382
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 95/246 (38%), Gaps = 33/246 (13%)
Query: 17 QVLPLILKNVPFD------AKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQT 70
+L ++ +N FD +++ S + +IE VA+ +KS R ++ I
Sbjct: 130 SLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKS--RKLREAFDIIQTMR 187
Query: 71 GFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFH 130
F+ R A +L+ + R P + + ++ E + V H F
Sbjct: 188 KFKFRPAFS-----------AYTILIGALSEVREPDPMLILFHQMQELGYEVN--VHLFT 234
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189
+ VFAR V L EM S + ++V + I G+ G V+ +
Sbjct: 235 TLIR------VFAREGRVDAALSLLDEMKSNSLDADIVLYNVC---IDCFGKAGKVDMSW 285
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
F+ MK PD Y +I LC+ ++A L EQ+E R P Y Y +I
Sbjct: 286 KFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQN--RKVPCAYAYNTMIM 343
Query: 250 SYCKYG 255
Y G
Sbjct: 344 GYGSAG 349
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 4/143 (2%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
N A ++ W E+ H + +V AR L L+EMS G G +++
Sbjct: 106 NTAVNYFQWAEKQTEKVHCPEAYNSLLMVMARNTEFDHLERILEEMSLSGFGP--SSNIS 163
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
L+ + + EA M++F+ RP AY ++I AL V + L QM+
Sbjct: 164 IELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQE 223
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G+ +V+ +T LI + + G
Sbjct: 224 LGYEV--NVHLFTTLIRVFAREG 244
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 11/138 (7%)
Query: 124 RFFH------FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK 177
+FFH ++VT M V + N + + +++ + N ++ +I
Sbjct: 286 KFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQ--NRKVPCAYAYNTMIM 343
Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
G G +EA R K P V AYN ++ L + +A + E+M+
Sbjct: 344 GYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAV-- 401
Query: 238 PPDVYTYTILISSYCKYG 255
P+V TY ILI C+ G
Sbjct: 402 -PNVPTYNILIDMLCREG 418
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI +L EG +N AL M++ P+V N++I+ LC+ +A + E M
Sbjct: 406 TYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGM 465
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ C P+ T++ LI K G
Sbjct: 466 DDK--VCTPNAVTFSSLIDGLGKCG 488
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G +V TS + K G + + M C PD+ N ++ + + G K
Sbjct: 508 GAIVYTSLIRSFFKC----GRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKG 563
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
R L ++ GF PD +Y+ILI K G+
Sbjct: 564 RALFREINAHGF--IPDARSYSILIHGLVKAGL 594
>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
Length = 1205
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+WD + EM RG + T + LI L + G ++ A+A F +MK RP+ + + ++
Sbjct: 393 VWDLIDEMHDRG--QPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTIL 450
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
++ LC+ G A+ + + + G+ +VYTY ++I +CK G+
Sbjct: 451 LDGLCKGGRLKDAQEVFQDLLTKGYHL--NVYTYNVMIDGHCKQGL 494
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L +EG V EA + M + +PDV Y+ +++ V KA+ + M
Sbjct: 271 TYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAM 330
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
L G PDV+TYTILI+ +CK M
Sbjct: 331 SLMGV--TPDVHTYTILINGFCKNKM 354
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 152 WDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+ EM+ +G + ++VT ST LI EG + EA+ M P+VY YN++
Sbjct: 219 YGLFSEMTVKGISADVVTYST---LIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNIL 275
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
++ALC+ G +A+ +L M + PDV TY+ L+ Y
Sbjct: 276 VDALCKEGKVKEAKSVLAVMLKACVK--PDVITYSTLMDGY 314
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
++ R+ +G L V +I L + LV++A F+ M DV YN +I
Sbjct: 1052 KLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGF 1111
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C VG +A LL +M L P+V TY IL+ + CK G
Sbjct: 1112 CIVGKLKEAIGLLNKMVLKTIN--PNVRTYNILVDALCKEG 1150
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + +V+EAL F M Q P + Y+ +I+ LC+ G L+++M
Sbjct: 341 TYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEM 400
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P +V TY+ LI CK G
Sbjct: 401 HDRG--QPANVITYSSLIDGLCKNG 423
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ +I L + LV+EA F M DV Y+ +I C G +A LL +M L
Sbjct: 203 STIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVL 262
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
P+VYTY IL+ + CK G
Sbjct: 263 KTIN--PNVYTYNILVDALCKEG 283
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++A++ F RM R P + +N ++++ ++ +++ A L ++EL G + PD+ T
Sbjct: 40 VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQ--PDLITL 97
Query: 245 TILISSYCKYGMQT 258
ILI+ +C G T
Sbjct: 98 NILINCFCHMGQIT 111
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T+ LIK L +G V +AL ++ + + +Y +IN +C++G+ A LL+
Sbjct: 129 TVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQ 188
Query: 229 QMELPGFRCPPDVYTYTILISSYCKY 254
+++ G P+V Y+ +I + CKY
Sbjct: 189 KID--GRLTKPNVVMYSTIIDALCKY 212
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T T LI L +G VN+AL ++ + + +Y +IN +C++G+ A LL
Sbjct: 996 TITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLR 1055
Query: 229 QMELPGFRCPPDVYTYTILISSYCKY 254
+++ G PDV Y +I + CK+
Sbjct: 1056 KID--GRLTKPDVVMYNTIIDALCKH 1079
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 55/97 (56%), Gaps = 8/97 (8%)
Query: 157 EMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
EM+ +G + ++VT +T+ ++G+ + EA+ +M P+V YN++++ALC
Sbjct: 1091 EMNVKGISADVVTYNTLIYGFCIVGK---LKEAIGLLNKMVLKTINPNVRTYNILVDALC 1147
Query: 216 RVGN--FNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+ G +++ +L +ME G C + T+ I+IS+
Sbjct: 1148 KEGKDLLDESLSMLSKMEDNG--CKANAVTFEIIISA 1182
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V +A F M PDV+ Y ++IN C+ ++A L ++M P + TY
Sbjct: 320 VKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNM--VPGIVTY 377
Query: 245 TILISSYCKYG 255
+ LI CK G
Sbjct: 378 SSLIDGLCKSG 388
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A++ +R++ +PD++ N++IN C +G +L ++ G+ PD T+T L
Sbjct: 945 AVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYH--PDTITFTTL 1002
Query: 248 ISSYCKYG 255
I+ C G
Sbjct: 1003 INGLCLKG 1010
>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like isoform 1 [Vitis vinifera]
Length = 610
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E TCKE G+ G +K L EM +G+ V T V LI + +EG ++EA+
Sbjct: 259 EATCKESGV----GQAMK----LLDEMRNKGSKPDVVTYNV--LINGICKEGRLDEAIKF 308
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
M + C+P+V +N+++ ++C G + A LL M G C P V T+ ILI+
Sbjct: 309 LNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKG--CSPSVVTFNILINFL 366
Query: 252 CKYGM 256
C+ G+
Sbjct: 367 CRQGL 371
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ +E V +A+ M+ +PDV YNV+IN +C+ G ++A L M
Sbjct: 253 TYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNM 312
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
P + C P+V T+ I++ S C G
Sbjct: 313 --PSYGCQPNVITHNIILRSMCSTG 335
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT +T+ ++ L + G + +A+ R Q C PDV Y ++I A C+ +A
Sbjct: 215 DVVTYNTI---LRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAM 271
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL++M G + PDV TY +LI+ CK G
Sbjct: 272 KLLDEMRNKGSK--PDVVTYNVLINGICKEG 300
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 150 GLW----DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
G W L +M R+G V T + LI L +GL+ A+ +M C P+
Sbjct: 335 GRWMDAEKLLSDMLRKGCSPSVVTFNI--LINFLCRQGLLGRAIDILEKMPMHGCTPNSL 392
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+YN +++ C+ ++A L+ M G C PD+ TY L+++ CK G
Sbjct: 393 SYNPLLHGFCKEKKMDRAIEYLDIMVSRG--CYPDIVTYNTLLTALCKDG 440
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + + ++L M RG ++VT +T L+ L ++G V+ A+ ++ C
Sbjct: 401 FCKEKKMDRAIEYLDIMVSRGCYPDIVTYNT---LLTALCKDGKVDVAVEILNQLSSKGC 457
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P + YN VI+ L +VG +A LL++M G + PD+ TY+ L+S + G
Sbjct: 458 SPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLK--PDIITYSSLVSGLSREG 510
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L EM R+G +++T S+ L+ L EG V+EA+ F+ ++ RP+ YN ++
Sbjct: 483 LLDEMRRKGLKPDIITYSS---LVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIML 539
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC+ ++A L M RC P TYTILI G+
Sbjct: 540 GLCKSRQTDRAIDFLAYM--ISKRCKPTEATYTILIEGIAYEGL 581
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G + T LI + G ++ AL RM PDV YN ++ LC G +
Sbjct: 178 SGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQ 234
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A +L++ C PDV TYTILI + CK
Sbjct: 235 AMEVLDRQLQK--ECYPDVITYTILIEATCK 263
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ + FL+ M RG ++ T LI+ G +A ++Q
Sbjct: 124 LVRNGELEDGFKFLESMVYRG--DIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAV 181
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV YNV+I+ C+ G + A +L++M + PDV TY ++ + C G
Sbjct: 182 PDVITYNVLISGYCKSGEIDNALQVLDRMNV-----APDVVTYNTILRTLCDSG 230
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 153 DFLKEMSRRGNGE-LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ L ++S +G L+T +TV I L + G A+ M++ +PD+ Y+ ++
Sbjct: 447 EILNQLSSKGCSPVLITYNTV---IDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLV 503
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ L R G ++A +E G R P+ TY ++ CK
Sbjct: 504 SGLSREGKVDEAIKFFHDLEGLGIR--PNAITYNSIMLGLCK 543
>gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
Length = 481
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 32/213 (15%)
Query: 45 IESVADVLKSIPRFFFQSPR----SIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPA 100
+ VADV K+I + SP+ S Q+G R + ++ +++ N G
Sbjct: 29 VRDVADVAKNISKVLMSSPQLVLDSALDQSGLR--------VSQEVVEDVLNRFRNAGLL 80
Query: 101 AYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSR 160
YR F+ W E+ H+ H+ M A+ K +WD + M +
Sbjct: 81 TYR--------------FFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRK 126
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ +++ T +++ V+EA+ F M+++ P++ A+N +++ALC+ N
Sbjct: 127 K---KMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNV 183
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
KA+ + E M R PD TY+IL+ + K
Sbjct: 184 RKAQEVFENMR---DRFTPDSKTYSILLEGWGK 213
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ NV+ + + M R + + T + L++ G+E + +A F M C
Sbjct: 177 LCKSKNVRKAQEVFENMRDRFTPD---SKTYSILLEGWGKEPNLPKAREVFREMIDAGCH 233
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
PD+ Y+++++ LC+ G ++A ++ M+ P C P + Y++L+ +Y
Sbjct: 234 PDIVTYSIMVDILCKAGRVDEALGIVRSMD-PSI-CKPTTFIYSVLVHTY 281
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + ++ +L + G V+EAL M C+P + Y+V+++ +A +M
Sbjct: 238 TYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEM 297
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E G + DV + LI ++CK
Sbjct: 298 ERSGMK--ADVAVFNSLIGAFCK 318
>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 528
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 38/179 (21%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
+A F++W F H+ EM + + N W + M R N E ++ T +
Sbjct: 124 QALSFFNWATSRPGFTHHPEPYNEMIDLAGKVRNFDLGWQVIDLMKAR-NVE-ISIETFS 181
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL------------------- 214
LI+ GL +EA+ F RM+ + C+PD A++++I+ L
Sbjct: 182 ILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSLKDK 241
Query: 215 ---------------CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
CR GN +A + +M++ G C P+VYTYTI+I + C+ G T
Sbjct: 242 FEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAG--CMPNVYTYTIVIDALCRCGQIT 298
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 46/116 (39%), Gaps = 33/116 (28%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-- 230
T L++ G + EA F MK C P+VY Y +VI+ALCR G +A + +M
Sbjct: 250 TNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAEMLD 309
Query: 231 -------------------------------ELPGFRCPPDVYTYTILISSYCKYG 255
++ CPPD TY LI S+CK G
Sbjct: 310 VGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHCKDG 365
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L++V + G + L + +MK+ C PD YN +I + C+ GN ++A +L M G
Sbjct: 322 LLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKG 381
Query: 235 FRCPPDVYTYTILISSYCK 253
C P+ T+ L S K
Sbjct: 382 --CSPNASTFNGLFGSIAK 398
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ N+ L M ++G ST L + + VN A + +MK+ +C+ +
Sbjct: 363 KDGNLDEALKVLNSMVKKGCSP--NASTFNGLFGSIAKLRDVNGAHRLYAKMKELKCKAN 420
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN+++ + + L ++M+ P+V TY +LI+ YC G
Sbjct: 421 TVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVE--PNVNTYCVLIAMYCGMG 470
>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
Length = 762
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + + +V+ + L EMS +G + T LI L + G +++A+
Sbjct: 468 NVVTYTALSDGLCKQGDVQAANELLHEMSNKGLE--LNACTYNSLINGLCKAGYLDQAMR 525
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
T M +PDVY Y +I+ALC+ G ++A LL++M G + P + TY +L++
Sbjct: 526 TMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIK--PTIVTYNVLMNG 583
Query: 251 YCKYG 255
+C G
Sbjct: 584 FCMSG 588
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 198 FRCRPD--VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
F+ PD V +YN+++ LC G AR L ++M PPDV TY ILI YC G
Sbjct: 254 FQGLPDKNVCSYNILLKVLCGAGRVEDARQLFDEMA-----SPPDVVTYGILIHGYCALG 308
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F M++ D Y +IN LCR G +A +L++M R D TYT+L+ Y
Sbjct: 387 FDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEM--LARRLDVDEVTYTVLVDGY 444
Query: 252 CKYG 255
CK G
Sbjct: 445 CKRG 448
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 53/148 (35%), Gaps = 37/148 (25%)
Query: 142 FARGNNVKGLWDFLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R +K L+EM +RR + V T T L+ + G + EA M Q
Sbjct: 409 LCRAGELKEAEKVLQEMLARRLD---VDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGV 465
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR------------------------ 236
P+V Y + + LC+ G+ A LL +M G
Sbjct: 466 APNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMR 525
Query: 237 ---------CPPDVYTYTILISSYCKYG 255
PDVYTYT LI + CK G
Sbjct: 526 TMADMDAAGLKPDVYTYTTLIDALCKSG 553
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L + G ++ A M +P + YNV++N C G + LLE M
Sbjct: 541 TYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWM 600
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
P+ TY L+ YC
Sbjct: 601 LEKNIH--PNATTYNSLMKQYC 620
>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
Length = 385
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + +D L +M+R+G V T T L+ L E +++A+ M++ C
Sbjct: 205 FCKLARLDDAYDLLNQMTRKGLTPNVVT--FTSLMDGLCRENRLSDAVHILGEMRRKSCS 262
Query: 202 PDVYAYNVVINALCRVGNFNKAR-FLLEQMELPGFRCPPDVYTYTILISSYCK 253
P VY YN +++ CRV +AR F+LE+M+ CPP+V ++ I+I CK
Sbjct: 263 PTVYTYNTILDGYCRVNQLEEARKFMLEEMD-----CPPNVVSFNIMIRGLCK 310
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T +CLI L +EG + EA+ F RM K C P+ YN +I+ CR+G ++A LLE+
Sbjct: 126 TYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLER 185
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
M G PDV TYT L++ +CK
Sbjct: 186 MAETGS--SPDVVTYTTLMNGFCK 207
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 160 RRGNG-------ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
RRG G E+ T T LI L + +EA M C PD++ Y +I
Sbjct: 38 RRGCGAAVQDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLIT 97
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ + A + EQ+ GFR PDV TY+ LI CK G
Sbjct: 98 GFCKSKKSDDALRVFEQLVARGFR--PDVVTYSCLIDGLCKEG 138
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+D L+EM +G + T T LI + ++AL F ++ RPDV Y+ +I
Sbjct: 74 YDLLEEMVY--SGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLI 131
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ LC+ G +A L +M G C P+ TY LIS +C+ G
Sbjct: 132 DGLCKEGRLKEAIDLFGRMIKSG-SCMPNTVTYNSLISGFCRMG 174
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ +K D M + G+ + T T LI G ++EA+ RM +
Sbjct: 134 LCKEGRLKEAIDLFGRMIKSGSC-MPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSS 192
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDV Y ++N C++ + A LL QM G P+V T+T L+ C+
Sbjct: 193 PDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL--TPNVVTFTSLMDGLCR 242
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT----CLIKVLGEEGLVNEALATFYRMKQ 197
R N + L EM R+ V T C + L E A + +++
Sbjct: 240 LCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEE--------ARKFMLEE 291
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C P+V ++N++I LC+V ++A L+E E RC PDV YT +I C+
Sbjct: 292 MDCPPNVVSFNIMIRGLCKVNRSSEAMELVE--EARRRRCNPDVVMYTTVIDVLCR 345
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 4/142 (2%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+ +A + + + + N VT + F R + + L+ M+ G+ V T T
Sbjct: 140 LKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYT 199
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
L+ + +++A +M + P+V + +++ LCR + A +L +M
Sbjct: 200 T--LMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMR 257
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
C P VYTY ++ YC+
Sbjct: 258 RKS--CSPTVYTYNTILDGYCR 277
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELP 233
+I+ L + +EA+ ++ RC PDV Y VI+ LCR ++A R + +E P
Sbjct: 304 MIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEP 363
Query: 234 GFRCPPDVYTYT 245
G C P+ TY+
Sbjct: 364 G--CLPNSITYS 373
>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 477
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F N+K + L EM + V T + LI LG+EG ++EA++ F MK
Sbjct: 278 FCIMGNLKEAFSLLNEMKLKNINPDVYTFNI--LIDALGKEGKIDEAISLFEEMKHKNMF 335
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++ Y +I+ LC+ + +A L ++M+ G + PDVY+YTIL+ + CK G
Sbjct: 336 PNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQ--PDVYSYTILLDALCKGG 387
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L + + A+A +MK+ +PDVY+Y ++++ALC+ G A+ + +
Sbjct: 340 TYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHL 399
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
+ G+ +V TY ++I+ CK G+
Sbjct: 400 LVKGYHL--NVRTYNVMINGLCKAGL 423
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 12/161 (7%)
Query: 104 NPQKVTLG-INKATEFYHWVERFFHFFHNEVTCKEMGI-VFARGNNVKGLWDF-----LK 156
+P +TL + K F ++R +FH++V + + + G + GL +
Sbjct: 160 HPDAITLNTLIKGLCFCGEIKRAL-YFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVA 218
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
+ R+ G V V T +I L + V +A + M P+V+ YN +I
Sbjct: 219 RLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGF 278
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C +GN +A LL +M+L PDVYT+ ILI + K G
Sbjct: 279 CIMGNLKEAFSLLNEMKLKNIN--PDVYTFNILIDALGKEG 317
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 4/124 (3%)
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186
+ F N VT + + ++++ K+M +G V + T+ L+ L + G +
Sbjct: 333 NMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTI--LLDALCKGGRLE 390
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
A F + +V YNV+IN LC+ G F L +ME G C PD T+
Sbjct: 391 NAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKG--CMPDAITFKT 448
Query: 247 LISS 250
+I +
Sbjct: 449 IICA 452
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G KGL F EM R NG L T LI + G ++EA M +P++
Sbjct: 228 GELQKGLGCF-GEMER--NGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNL 284
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+YNV+IN LCR G+ +A +LE+M GF PD TY L++ YCK G
Sbjct: 285 ISYNVIINGLCREGSMKEAWEILEEMGYKGF--TPDEVTYNTLLNGYCKEG 333
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R ++K W+ L+EM +G + VT +T L+ +EG ++AL M +
Sbjct: 294 LCREGSMKEAWEILEEMGYKGFTPDEVTYNT---LLNGYCKEGNFHQALVIHAEMVRNGV 350
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P V Y +IN++C+ N N+A +QM + G R P+ TYT LI + + G+
Sbjct: 351 SPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLR--PNERTYTTLIDGFSRQGL 404
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 139 GIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
IV +RG+ + +EM R V T + LI+ G + + L F M++
Sbjct: 186 AIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNI--LIRGFCSVGELQKGLGCFGEMERN 243
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+V YN +I+A C++G ++A LL+ M G + P++ +Y ++I+ C+ G
Sbjct: 244 GCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQ--PNLISYNVIINGLCREG 298
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + + + + + LK MS +G + + V +I L EG + EA
Sbjct: 248 NVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNV--IINGLCREGSMKEAWE 305
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M PD YN ++N C+ GNF++A + +M G P V TYT LI+S
Sbjct: 306 ILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGV--SPSVVTYTALINS 363
Query: 251 YCK 253
CK
Sbjct: 364 MCK 366
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ N+ +F +M RG T T LI +GL+NEA M + P
Sbjct: 366 KARNLNRAMEFFDQMRIRGLRP--NERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPS 423
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V YN I+ C + +A ++++M G PDV +Y+ +IS +C+ G
Sbjct: 424 VVTYNAFIHGHCVLERMEEALGVVQEMVEKGL--APDVVSYSTIISGFCRKG 473
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F R + + +EM +G + + VT S+ LI+ L E + EA M
Sbjct: 469 FCRKGELDRAFQMKQEMVEKGVSPDAVTYSS---LIQGLCEMRRLTEACDLSQEMLDMGL 525
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD + Y +INA C G+ NKA L ++M GF PD TY++LI+ K
Sbjct: 526 PPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFL--PDAVTYSVLINGLNK 576
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+N+A EF+ + R NE T + F+R + + L EM+ G V T
Sbjct: 370 LNRAMEFFDQM-RIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYN 428
Query: 172 V----TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
C+++ + EAL M + PDV +Y+ +I+ CR G ++A +
Sbjct: 429 AFIHGHCVLERM------EEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMK 482
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++M G PD TY+ LI C+
Sbjct: 483 QEMVEKGV--SPDAVTYSSLIQGLCE 506
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+V LIK +GL++EA F M + +P YNV+I+ CR GN KA L ++M
Sbjct: 616 SVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEM 675
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
GF P T LI + K GM
Sbjct: 676 IHSGF--VPHTVTVITLIKALFKEGM 699
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EM R NG + T T LI + + +N A+ F +M+ RP+ Y +I+ R
Sbjct: 344 EMVR--NGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSR 401
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
G N+A +L +M GF P V TY I +C
Sbjct: 402 QGLLNEAYRILNEMTESGF--SPSVVTYNAFIHGHC 435
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 154 FLKEMSRRGN--GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
L +M G+ ++VT STV I L + ++ EA RM + C PDV Y +I
Sbjct: 289 ILDQMQESGDVLPDVVTYSTV---INGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTII 345
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ LC+ G +A +LL+ M+ G C P+V TYT LIS CK
Sbjct: 346 DGLCKCGRLEEAEYLLQGMKRAG--CAPNVVTYTTLISGLCK 385
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 156 KEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
++M RR G T V + +I + G + EA T M++ R PDV YN VI+
Sbjct: 217 EQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDG 276
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC++G +A+ +L+QM+ G PDV TY+ +I+ CK M
Sbjct: 277 LCKLGKIAEAQVILDQMQESG-DVLPDVVTYSTVINGLCKSDM 318
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
A ++ G D L+ M N T T LI + EA+ M++ C
Sbjct: 35 MANAGDLDGAMDHLRSMGCDPN-----VVTYTALIAAFARAKKLEEAMKLLEEMRERGCP 89
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++ YNV+++ALC++ A+ ++++M GF P+V T+ L+ +CK G
Sbjct: 90 PNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGF--APNVMTFNSLVDGFCKRG 141
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + FAR ++ L+EM RG + T V L+ L + +V A
Sbjct: 56 NVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNV--LVDALCKLSMVGAAQD 113
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+M + P+V +N +++ C+ GN + AR LL M G R P+V TY+ LI
Sbjct: 114 VVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMR--PNVVTYSALIDG 171
Query: 251 YCK 253
CK
Sbjct: 172 LCK 174
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L M + G N ++VT +T+ I L + G + EA MK+ C P+V Y +I+
Sbjct: 325 LLDRMCKAGCNPDVVTYTTI---IDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLIS 381
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ ++A ++E+M G CPP++ TY +++ C G
Sbjct: 382 GLCKARKVDEAERVMEEMRNAG--CPPNLVTYNTMVNGLCVSG 422
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L+EM + +G T + LI L + + EA RM C PDV Y+ +I+
Sbjct: 183 EVLEEM--KASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIH 240
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A C+ G +A+ L++M R PDV TY +I CK G
Sbjct: 241 AFCKSGKLLEAQKTLQEMRKQ--RKSPDVVTYNTVIDGLCKLG 281
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+ M R G V T T LI L + V+EA M+ C P++ YN ++N
Sbjct: 360 LLQGMKRAGCAPNVVTYTT--LISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNG 417
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
LC G +A+ L+++M+ C PD TY ++++
Sbjct: 418 LCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNA 454
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + NV L M +G V T + LI L + EA MK
Sbjct: 137 FCKRGNVDDARKLLGIMVAKGMRPNVVTYSA--LIDGLCKSQKFLEAKEVLEEMKASGVT 194
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD + Y+ +I+ LC+ +A +L +M G C PDV Y+ +I ++CK G
Sbjct: 195 PDAFTYSALIHGLCKADKIEEAEQMLRRM--AGSGCTPDVVVYSSIIHAFCKSG 246
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
++ + L+EM G T T +I + G ++ A+ ++ C P+V
Sbjct: 3 AGDLHAALELLEEMKSAGFAPDAFTHTP--IITAMANAGDLDGAMD---HLRSMGCDPNV 57
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
Y +I A R +A LLE+M G CPP++ TY +L+ + CK M
Sbjct: 58 VTYTALIAAFARAKKLEEAMKLLEEMRERG--CPPNLVTYNVLVDALCKLSM 107
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
V D +K+M G V T L+ + G V++A M RP+V Y
Sbjct: 108 VGAAQDVVKKMIEGGFAPNVMT--FNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTY 165
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ +I+ LC+ F +A+ +LE+M+ G PD +TY+ LI CK
Sbjct: 166 SALIDGLCKSQKFLEAKEVLEEMKASGV--TPDAFTYSALIHGLCK 209
>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI L + G +A+ F M C+PDVY YN +IN LC++G A LL
Sbjct: 162 TIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLL 221
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++ME G C P++ TY+ LI S C+
Sbjct: 222 KKMEEAG--CQPNMVTYSTLIDSLCR 245
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
LK+M G +VT ST LI L + LVNEAL F MK PD++ Y +I
Sbjct: 220 LLKKMEEAGCQPNMVTYST---LIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQ 276
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ + +A LL E+ PD+ T+ +L+ ++CK G
Sbjct: 277 GLCKFSRWKEASALLN--EMTSLNIMPDIVTFNVLVDTFCKEG 317
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + ++ D + M GN L T + L+ ++G + +A F M+ +
Sbjct: 418 FCQLGKLREAQDLFRNMCTNGN--LPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLK 475
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P++ Y ++++A+C+ GN AR L ++ + G + P V YT +I+ CK G+
Sbjct: 476 PNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQ--PHVQLYTTIINGLCKEGL 528
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+ + ++ + +P + + +IN LC+VG F +A L + M G C PDVYTY
Sbjct: 144 VDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKG--CQPDVYTY 201
Query: 245 TILISSYCKYG 255
+I+ CK G
Sbjct: 202 NTIINGLCKIG 212
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L + G A +M++ C+P++ Y+ +I++LCR N+A + M
Sbjct: 200 TYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYM 259
Query: 231 ELPGFRCPPDVYTYTILISSYCKY 254
+ G PD++TYT LI CK+
Sbjct: 260 KAKGI--SPDIFTYTSLIQGLCKF 281
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+ F M P+ +YN +I+ C++G +A+ L M G PD++TY
Sbjct: 389 IDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNL--PDLFTY 446
Query: 245 TILISSYCKYG 255
+IL+ +CK G
Sbjct: 447 SILLDGFCKQG 457
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ +EG V+EAL M + P+V Y+ ++ + +AR L M
Sbjct: 305 TFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVM 364
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C P++++Y ILI+ YCK
Sbjct: 365 ITKG--CKPNIFSYNILINGYCK 385
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V EA F+ M C+P++++YN++IN C+ ++A L +M G P+ +Y
Sbjct: 354 VVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGL--TPNNVSY 411
Query: 245 TILISSYCKYG 255
LI +C+ G
Sbjct: 412 NTLIHGFCQLG 422
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L +EGL++EAL F M+ C PD +YNV+I L + + ++A L+ +M
Sbjct: 517 TTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRD 576
Query: 233 PGF 235
GF
Sbjct: 577 RGF 579
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ + + G +A F + +P V Y +IN LC+ G ++A ME
Sbjct: 482 TILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEA 541
Query: 233 PGFRCPPDVYTYTILI 248
G CPPD +Y ++I
Sbjct: 542 DG--CPPDEISYNVII 555
>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M VF G KG F +E++ +G + + + LI L + GL NE FY MK+
Sbjct: 306 MDCVFKAGETEKGRALF-REIN--AHGFIPDARSYSILIHGLVKAGLANETYELFYAMKE 362
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C D +AYN VI+ C+ G NKA LLE+M++ G PP V TY +I K
Sbjct: 363 QGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGH--PPTVVTYGSVIDGLAK 416
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T CL+ L + +NEAL F MK +C P+ Y+++IN LCRV FNKA ++M
Sbjct: 476 TWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEM 535
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G + P+ TYT +IS K G
Sbjct: 536 QKLGLK--PNTITYTTMISGLAKAG 558
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 160 RRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
++ G + + C++ LG++ V EAL F MK+ P+V YN++I+ LCR G
Sbjct: 116 QKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKR-DAVPNVPTYNILIDMLCREGK 174
Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N A + + ME G P+V T I+I CK
Sbjct: 175 LNAALEIRDDMERAGLF--PNVLTVNIMIDRLCK 206
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ NG + + LI G+ G ++EA + Q P+VY +N +++AL +
Sbjct: 431 KSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEI 490
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N+A + M+ +CPP+ TY+ILI+ C+
Sbjct: 491 NEALICFQSMK--DLKCPPNQITYSILINGLCR 521
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI +L EG +N AL M++ P+V N++I+ LC+ +A + E M
Sbjct: 161 TYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGM 220
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ C P+ T++ LI K G
Sbjct: 221 DDK--VCTPNAVTFSSLIDGLGKCG 243
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G +V TS + K G + + M C PD+ N ++ + + G K
Sbjct: 263 GAIVYTSLIRSFFKC----GRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKG 318
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
R L ++ GF PD +Y+ILI K G+
Sbjct: 319 RALFREINAHGF--IPDARSYSILIHGLVKAGL 349
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I G G +EA R K P V AYN ++ L + +A + E+M+
Sbjct: 96 MIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDA 155
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+V TY ILI C+ G
Sbjct: 156 V---PNVPTYNILIDMLCREG 173
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
VL + ++EA+ F +++Q R P YAYN +I G F++A LLE+ + G
Sbjct: 64 VLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKG--S 121
Query: 238 PPDVYTYTILIS 249
P V Y +++
Sbjct: 122 IPSVIAYNCILT 133
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ N++ + +M RG + T T LI ++G +++AL M++ +P
Sbjct: 305 KAGNLEQAVALVAQMRERG--LRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPS 362
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V YN +IN C++G + AR L+ +ME R PDV TY+ +IS YCK G
Sbjct: 363 VVCYNALINGYCKLGRMDLARELIREMEAK--RVKPDVVTYSTIISGYCKVG 412
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT M + ++G EM R G ++V+ +T L+ + G ++E+L
Sbjct: 222 NLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNT---LLSGYCKVGCLHESL 278
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
A F M Q PDV + +I+A C+ GN +A L+ QM G R + T+T LI
Sbjct: 279 AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRM--NEVTFTALID 336
Query: 250 SYCKYG 255
+CK G
Sbjct: 337 GFCKKG 342
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + N+ + ++M ++G L T + LI+ L EE +N+A F M Q +
Sbjct: 408 YCKVGNLDSAFQLNQKMLKKG--VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQ 465
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD + Y +I+ C+ GN KA L ++M G PDV TY++LI+ K
Sbjct: 466 PDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVL--PDVVTYSVLINGLSK 515
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL M R G V T + L++ L G + EA+ M+ C P+ YN ++ A
Sbjct: 139 FLSSMLRHGVAPNVYTYNI--LVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAA 196
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CR G + A ++ M G P++ T+ +++ CK G
Sbjct: 197 FCRAGELDGAERVVSLMREEG-NAKPNLVTFNSMVNGLCKAG 237
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 157 EMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
EM++RG LV T T LI + G + +A+A +M++ R + + +I+ C
Sbjct: 283 EMTQRG---LVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFC 339
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G + A +E+M G + P V Y LI+ YCK G
Sbjct: 340 KKGFLDDALLAVEEMRKCGIQ--PSVVCYNALINGYCKLG 377
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 153 DFLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ ++EM ++R ++VT ST+ I + G ++ A +M + PD Y+ +I
Sbjct: 384 ELIREMEAKRVKPDVVTYSTI---ISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 440
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC N A L E M G + PD +TYT LI +CK G
Sbjct: 441 RGLCEEKRLNDACELFENMLQLGVQ--PDEFTYTTLIDGHCKEG 482
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++ A M+ R +PDV Y+ +I+ C+VGN + A L ++M G PD
Sbjct: 377 GRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVL--PDAI 434
Query: 243 TYTILISSYCK 253
TY+ LI C+
Sbjct: 435 TYSSLIRGLCE 445
>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
Length = 735
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T+T LIK L EG V+EA+ RM + C+PDV YN ++N +CR G+ + A LL
Sbjct: 158 TTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLR 217
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+ME + DV+TY+ +I S C+ G
Sbjct: 218 KMEERNVK--ADVFTYSTIIDSLCRDG 242
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R + D L++M R ++ T ST+ I L +G ++ A++ F M+
Sbjct: 203 ICRSGDTSLALDLLRKMEERNVKADVFTYSTI---IDSLCRDGCIDAAISLFKEMETKGI 259
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ V YN ++ LC+ G +N LL+ M P+V T+ +L+ + K G
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDM--VSREIVPNVITFNVLLDVFVKEG 312
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 142 FARGNNVKGLWD----FLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMK 196
RG G W+ LK+M R E+V T L+ V +EG + EA + M
Sbjct: 269 LVRGLCKAGKWNDGALLLKDMVSR---EIVPNVITFNVLLDVFVKEGKLQEANELYKEMI 325
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P++ YN +++ C ++A +L+ M +C PD+ T+T LI YC
Sbjct: 326 TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRN--KCSPDIVTFTSLIKGYC 379
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + +K + +EM +G L T L+ L + G + +AL F +++ +
Sbjct: 413 FCQSGKIKLAEELFQEMV--SHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 470
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ Y +I +C+ G A L + G + P+V TYT++IS CK G
Sbjct: 471 LGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVK--PNVMTYTVMISGLCKKG 522
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I+ + + G V +A F + +P+V Y V+I+ LC+ G+ ++A LL +ME
Sbjct: 477 TTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 536
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G P+ TY LI ++ + G
Sbjct: 537 DGN--APNDCTYNTLIRAHLRDG 557
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
R + KEM +G + +S VT L++ L + G N+ M
Sbjct: 238 LCRDGCIDAAISLFKEMETKG----IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE 293
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P+V +NV+++ + G +A L ++M G P++ TY L+ YC
Sbjct: 294 IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGI--SPNIITYNTLMDGYC 344
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 122 VERFFHFFHNEVTCK-EMGIVF--------ARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
+E+ F + K ++GIV +G V+ W+ + +G V T TV
Sbjct: 454 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 513
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+I L ++G ++EA +M++ P+ YN +I A R G+ + L+E+M+
Sbjct: 514 --MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKS 571
Query: 233 PGF 235
GF
Sbjct: 572 CGF 574
>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
Length = 717
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G + T T LI ++G +++AL M++ +P V YN +IN C++G
Sbjct: 320 RERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRM 379
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ AR L+ +ME R PDV TY+ +IS YCK G
Sbjct: 380 DLARELIREMEAK--RVKPDVVTYSTIISGYCKVG 412
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT M + ++G EM R G ++V+ +T L+ + G ++E+L
Sbjct: 222 NLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNT---LLSGYCKVGCLHESL 278
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
A F M Q PDV + +I+A C+ GN +A L+ QM G R + T+T LI
Sbjct: 279 AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRM--NEVTFTALID 336
Query: 250 SYCKYG 255
+CK G
Sbjct: 337 GFCKKG 342
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T + LI+ L EE +N+A F M Q +PD + Y +I+ C+ GN KA
Sbjct: 428 GVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKA 487
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
L ++M G PDV TY++LI+ K
Sbjct: 488 LSLHDEMIRKGVL--PDVVTYSVLINGLSK 515
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL M R G V T + L++ L G + EA+ M+ C P+ YN ++ A
Sbjct: 139 FLSSMLRHGVAPNVYTYNI--LVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAA 196
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CR G + A ++ M G P++ T+ +++ CK G
Sbjct: 197 FCRAGELDGAERVVSLMREEG-NAKPNLVTFNSMVNGLCKAG 237
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 157 EMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
EM++RG LV T T LI + G + +A+A +M++ R + + +I+ C
Sbjct: 283 EMTQRG---LVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFC 339
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G + A +E+M G + P V Y LI+ YCK G
Sbjct: 340 KKGFLDDALLAVEEMRKCGIQ--PSVVCYNALINGYCKLG 377
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 153 DFLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ ++EM ++R ++VT ST+ I + G ++ A +M + PD Y+ +I
Sbjct: 384 ELIREMEAKRVKPDVVTYSTI---ISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 440
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC N A L E M G + PD +TYT LI +CK G
Sbjct: 441 RGLCEEKRLNDACELFENMLQLGVQ--PDEFTYTTLIDGHCKEG 482
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++ A M+ R +PDV Y+ +I+ C+VGN + A L ++M G PD
Sbjct: 377 GRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVL--PDAI 434
Query: 243 TYTILISSYCK 253
TY+ LI C+
Sbjct: 435 TYSSLIRGLCE 445
>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
Length = 553
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E TCKE G+ G +K L EM +G+ V T V LI + +EG ++EA+
Sbjct: 202 EATCKESGV----GQAMK----LLDEMRNKGSKPDVVTYNV--LINGICKEGRLDEAIKF 251
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
M + C+P+V +N+++ ++C G + A LL M G C P V T+ ILI+
Sbjct: 252 LNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKG--CSPSVVTFNILINFL 309
Query: 252 CKYGM 256
C+ G+
Sbjct: 310 CRQGL 314
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ +E V +A+ M+ +PDV YNV+IN +C+ G ++A L M
Sbjct: 196 TYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNM 255
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
P + C P+V T+ I++ S C G
Sbjct: 256 --PSYGCQPNVITHNIILRSMCSTG 278
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT +T+ ++ L + G + +A+ R Q C PDV Y ++I A C+ +A
Sbjct: 158 DVVTYNTI---LRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAM 214
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL++M G + PDV TY +LI+ CK G
Sbjct: 215 KLLDEMRNKGSK--PDVVTYNVLINGICKEG 243
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L +M R+G V T + LI L +GL+ A+ +M C P+ +YN +++
Sbjct: 286 LLSDMLRKGCSPSVVTFNI--LINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHG 343
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ ++A L+ M G C PD+ TY L+++ CK G
Sbjct: 344 FCKEKKMDRAIEYLDIMVSRG--CYPDIVTYNTLLTALCKDG 383
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + + ++L M RG ++VT +T L+ L ++G V+ A+ ++ C
Sbjct: 344 FCKEKKMDRAIEYLDIMVSRGCYPDIVTYNT---LLTALCKDGKVDVAVEILNQLSSKGC 400
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P + YN VI+ L +VG +A LL++M G + PD+ TY+ L+S + G
Sbjct: 401 SPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLK--PDIITYSSLVSGLSREG 453
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L EM R+G +++T S+ L+ L EG V+EA+ F+ ++ RP+ YN ++
Sbjct: 426 LLDEMRRKGLKPDIITYSS---LVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIML 482
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC+ ++A L M RC P TYTILI G+
Sbjct: 483 GLCKSRQTDRAIDFLAYM--ISKRCKPTEATYTILIEGIAYEGL 524
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G + T LI + G ++ AL RM PDV YN ++ LC G +
Sbjct: 121 SGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQ 177
Query: 223 ARFLLE-QMELPGFRCPPDVYTYTILISSYCK 253
A +L+ Q++ C PDV TYTILI + CK
Sbjct: 178 AMEVLDRQLQ---KECYPDVITYTILIEATCK 206
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ + FL+ M RG ++ T LI+ G +A ++Q
Sbjct: 67 LVRNGELEDGFKFLESMVYRG--DIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAV 124
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV YNV+I+ C+ G + A +L++M + PDV TY ++ + C G
Sbjct: 125 PDVITYNVLISGYCKSGEIDNALQVLDRMNV-----APDVVTYNTILRTLCDSG 173
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 153 DFLKEMSRRGNGE-LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ L ++S +G L+T +TV I L + G A+ M++ +PD+ Y+ ++
Sbjct: 390 EILNQLSSKGCSPVLITYNTV---IDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLV 446
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ L R G ++A +E G R P+ TY ++ CK
Sbjct: 447 SGLSREGKVDEAIKFFHDLEGLGIR--PNAITYNSIMLGLCK 486
>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
Length = 737
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 42/180 (23%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLK--------------- 156
++KA +F+ W + H++ TC + F R + +D K
Sbjct: 112 LDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYS 171
Query: 157 --------------------EMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRM 195
EM +RG +V + V +IK L + G V+ AL YR
Sbjct: 172 TLINGFCKARDFQQAYRLLDEMEKRG---IVPHNAVYNTIIKGLCDNGRVDSAL-VHYRD 227
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Q C P V Y ++++ALC+ + A +LE M G C P+V TY LI+ +CK G
Sbjct: 228 MQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAG--CAPNVVTYNTLINGFCKLG 285
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I + + G ++ A F M C PD+Y YN++I+ CR + AR LLE+M
Sbjct: 378 TFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERM 437
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G CPPDV TY ++S CK
Sbjct: 438 TEAG--CPPDVVTYNSIVSGLCK 458
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ L + +++A M + C P+V YN +IN C++GN ++A L QM
Sbjct: 238 TYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQM 297
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C PDV+TY ILI YCK
Sbjct: 298 LENS--CSPDVFTYNILIDGYCK 318
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+++A E Y V R +F + VTC + + + L+EM R G+ V T
Sbjct: 462 VDEAYEVYE-VLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYT 520
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ LI + ++++LA F M C P V Y++VI+ LC+ LL+ M
Sbjct: 521 I--LIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTML 578
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
G PD YT +I CK
Sbjct: 579 ERGV--TPDAIVYTSVIDGLCK 598
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 154 FLKEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
LK M RG VT + T +I L + +EA + MKQ C P V YNV++
Sbjct: 573 LLKTMLERG----VTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLV 628
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ LC+V ++A LLE ME G C PD TY + + K
Sbjct: 629 DKLCKVSRLDEAIHLLEVMESDG--CLPDTVTYNSVFDGFWK 668
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L+EM + G +T +T L+ L + G +A M + C+P + +N++I+
Sbjct: 328 LLQEMVKYGCEPNFITYNT---LMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMID 384
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C+VG + A L + M G C PD+YTY I+IS C+
Sbjct: 385 MFCKVGQLDLAYELFQLMTDRG--CLPDIYTYNIMISGACR 423
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L++M G V T LI + G ++EA+ F +M + C PDV+ YN++I+
Sbjct: 258 ILEDMIEAGCAPNVVTYNT--LINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDG 315
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ LL++M G C P+ TY L+ S K G
Sbjct: 316 YCKQERPQDGAKLLQEMVKYG--CEPNFITYNTLMDSLVKSG 355
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R N + L+ M+ G V T ++ L + V+EA + ++ D
Sbjct: 423 RANRIDDARQLLERMTEAGCPPDVVT--YNSIVSGLCKASQVDEAYEVYEVLRNGGYFLD 480
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
V + +I+ LC+ + A LL +ME G PDV YTILI +CK
Sbjct: 481 VVTCSTLIDGLCKSRRLDDAEKLLREMERNG--SAPDVVAYTILIHGFCK 528
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++ ++ K M + G V T V L+ L + ++EA+ M+ C
Sbjct: 596 LCKSDSYDEAYELYKLMKQTGCAPTVVTYNV--LVDKLCKVSRLDEAIHLLEVMESDGCL 653
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
PD YN V + + +KA L + M+ G C P + Y++L++
Sbjct: 654 PDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRG--CSPTPFMYSLLLT 699
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
M ++ C P+ YN ++++L + G + A F L QM L C P +T+ ++I +CK
Sbjct: 331 EMVKYGCEPNFITYNTLMDSLVKSGKYIDA-FNLAQMMLRR-DCKPSHFTFNLMIDMFCK 388
Query: 254 YG 255
G
Sbjct: 389 VG 390
>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Glycine max]
Length = 479
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGE-EGLVNEALATFYRMKQ 197
+ N+VK F +EM G + +S V+ LIK L + + V+ AL F M
Sbjct: 129 ILVEENHVKRAIGFYREMRELG----IPSSVVSLNILIKALCKNKETVDSALRIFQEMPN 184
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C+PD Y Y +IN LCR+GN ++A+ L ++ME GF V TYT LI C+
Sbjct: 185 RGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGF--SASVVTYTSLIHGLCQ 238
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R N+ + KEM ++G V T T LI L + ++EA+ MK+
Sbjct: 201 LCRLGNISEAKELFKEMEQKGFSASVVT--YTSLIHGLCQSNNLDEAIGLLEEMKRNDIE 258
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+V+ Y+ +++ LC+ G+ ++A LLE M+ P++ TY+ LI+ CK
Sbjct: 259 PNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHH--LPNMVTYSTLINGLCK 308
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T ++ +L EE V A+ + M++ V + N++I ALC+ + +
Sbjct: 119 TQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLNILIKALCKNKETVDSALRI 178
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
Q E+P C PD YTY LI+ C+ G
Sbjct: 179 FQ-EMPNRGCQPDSYTYGTLINGLCRLG 205
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+EM RG + T LI L G ++EA F M+Q V Y +I+
Sbjct: 178 IFQEMPNRGCQP--DSYTYGTLINGLCRLGNISEAKELFKEMEQKGFSASVVTYTSLIHG 235
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ N ++A LLE+M+ P+V+TY+ L+ CK G
Sbjct: 236 LCQSNNLDEAIGLLEEMKRNDIE--PNVFTYSSLMDGLCKGG 275
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
I++A E + +E+ F + VT + + NN+ L+EM R N T
Sbjct: 207 ISEAKELFKEMEQK-GFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKR--NDIEPNVFT 263
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ L+ L + G ++A+ M + P++ Y+ +IN LC+ +A +L++M
Sbjct: 264 YSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMR 323
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
+ G + P+ Y +IS C G
Sbjct: 324 IQGLK--PNAGLYGKIISGLCAAG 345
>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
Length = 608
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T ST LI L EG + EA+ F M + P+V +YN +IN LC+ GN + A +
Sbjct: 157 TASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVF 216
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++ME G C PDV TY +I S CK
Sbjct: 217 KKMEQNG--CKPDVVTYNTIIDSLCK 240
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
+K + EM RRG+ V + +I L + G + A+ F +M+Q C+PDV Y
Sbjct: 174 IKEAVELFNEMVRRGHEPNVISYNT--IINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTY 231
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N +I++LC+ N A L +M G PP+V+TY ++ +C G
Sbjct: 232 NTIIDSLCKDRLVNDAMEFLSEMLDRGI--PPNVFTYNCMVHGFCILG 277
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
KEM G + T T+T L+ L +EG+V+EA F M + P++ YN +++
Sbjct: 285 LFKEMV--GRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDG 342
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C N+A+ + E M G C P V++Y ILI+ +CK
Sbjct: 343 YCLQRLMNEAKKVFEIMIRQG--CAPGVHSYNILINGFCK 380
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ N D K+M + G ++VT +T+ I L ++ LVN+A+ M
Sbjct: 203 LCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTI---IDSLCKDRLVNDAMEFLSEMLDRGI 259
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P+V+ YN +++ C +G N+A L ++M G PD T TIL+ CK GM
Sbjct: 260 PPNVFTYNCMVHGFCILGQLNEATRLFKEM--VGRDVMPDTVTLTILVDGLCKEGM 313
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
ST L+ + L+NEA F M + C P V++YN++IN C+ ++A+ LL +
Sbjct: 334 STYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAE 393
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M PD TY+ L+ C++G
Sbjct: 394 MYHKALN--PDTVTYSTLMQGLCQFG 417
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
V +FL EM RG V T C++ G +NEA F M PD
Sbjct: 244 VNDAMEFLSEMLDRGIPPNVFT--YNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTL 301
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
++++ LC+ G ++AR + E M G P++ TY L+ YC
Sbjct: 302 TILVDGLCKEGMVSEARLVFETMTEKGVE--PNISTYNALMDGYC 344
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + + L EM + N + VT ST L++ L + G EAL F M +
Sbjct: 378 FCKSRRMDEAKSLLAEMYHKALNPDTVTYST---LMQGLCQFGRPKEALNIFKEMCSYGL 434
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
P++ Y+++++ C+ G+ ++A LL+ M+ + P++ +TILI
Sbjct: 435 LPNLVTYSILLDGFCKHGHLDEALKLLKSMQEK--KLEPNIVHHTILI 480
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
K + KEM G L T + L+ + G ++EAL M++ + P++ +
Sbjct: 420 KEALNIFKEMCSYG--LLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHT 477
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
++I + G A+ L ++ G R P + TYT++I K G+
Sbjct: 478 ILIEGMFIAGKLEVAKELFSKLFADGIR--PTIRTYTVMIKGLLKEGLS 524
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++ALA+FYRM + RP V + + + + ++ L QM+L F +VY+
Sbjct: 69 IDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDL--FGVTHNVYSL 126
Query: 245 TILISSYCK 253
+LI+ C+
Sbjct: 127 NVLINCLCR 135
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRR--GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
+ G + G + KE+ + +G T T T +IK L +EGL +EA F +M+
Sbjct: 478 ILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDD 537
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
P+ +YNV+I + + + A L+++M G R ++ T+ +L+
Sbjct: 538 GFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEM--VGKRFSANLSTFQMLLD 586
>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Vitis vinifera]
Length = 531
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 38/175 (21%)
Query: 118 FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK 177
F++W F H+ EM + + W + M R N E + T T L++
Sbjct: 132 FFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTR-NVE-IPVETFTILVR 189
Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL----------------------- 214
+ GL EA+ F RM+ + C+PD A++VVI++L
Sbjct: 190 RYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPD 249
Query: 215 -----------CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
CR GN ++A + +M++ G + P+VYTY+I+I + C+ G T
Sbjct: 250 VVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQ--PNVYTYSIVIDALCRSGQIT 302
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 33/114 (28%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-- 230
T L+ G ++EA F MK +P+VY Y++VI+ALCR G +A + +M
Sbjct: 254 TSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMID 313
Query: 231 -------------------------------ELPGFRCPPDVYTYTILISSYCK 253
++ CPPD TY LI S+C+
Sbjct: 314 VGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCR 367
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R +N++ L + + N + S+ + + + G VN A F +MK +CRP+
Sbjct: 367 RDDNLEEAVKILNSVKKGCN---LNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPN 423
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN+++ + + L ++M+ P+ TY +LIS++C G
Sbjct: 424 TVTYNILMRMFADKKSTDMVLKLRKEMDENEIE--PNANTYRVLISTFCGIG 473
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI L G EAL F MK+ C P+V+ Y V+I+ LC+ ++AR +L
Sbjct: 298 TVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKML 357
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
+M G P V TY LI YCK GM
Sbjct: 358 SEMSEKGL--IPSVVTYNALIDGYCKEGM 384
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ T LI L E G +NEAL F M + C P V Y V+I AL G +A L +M
Sbjct: 266 SYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEM 325
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ G C P+V+TYT+LI CK
Sbjct: 326 KEKG--CEPNVHTYTVLIDGLCK 346
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+ CKE R L+D +K + N E++ T+ + KV G ++ A +
Sbjct: 482 DTLCKE-----GRVEEAGTLFDSVKAKGVKAN-EVIYTALIDGYCKV----GKIDVAYSL 531
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
RM C P+ Y YNV+I LC+ +A L+ +M G + P V TYTILI
Sbjct: 532 LERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVK--PTVVTYTILIGEM 589
Query: 252 CKYG 255
K G
Sbjct: 590 LKDG 593
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N+++ + L M+ NG + T + I L +EG V EA F +K + +
Sbjct: 453 NDLESAYRLLSLMNE--NGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEV 510
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
Y +I+ C+VG + A LLE+M C P+ YTY +LI CK
Sbjct: 511 IYTALIDGYCKVGKIDVAYSLLERM--LNDACLPNSYTYNVLIEGLCK 556
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 154 FLKEMSRRGN--GELVTTSTVTC---LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
F+ E+ R+ N GE T+ C ++ L + L++E + + + P++Y +N
Sbjct: 139 FVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFN 198
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++N C++GN +A ++ G PD +TYT LI +C+
Sbjct: 199 AMVNGYCKIGNVVEAELYASKIVQAGLH--PDTFTYTSLILGHCR 241
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
G V+ L + EM +G V T TV LI L +E ++EA M + P
Sbjct: 311 GSGRKVEAL-NLFNEMKEKGCEPNVHTYTV--LIDGLCKENKMDEARKMLSEMSEKGLIP 367
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
V YN +I+ C+ G + A +L+ ME C P+ TY LI CK
Sbjct: 368 SVVTYNALIDGYCKEGMIDDAFEILDLME--SNSCGPNTRTYNELICGLCK 416
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ N + L EMS +G + + T LI +EG++++A M+ C
Sbjct: 344 LCKENKMDEARKMLSEMSEKG--LIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCG 401
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+ YN +I LC+ +KA LL +M + P + TY LI CK
Sbjct: 402 PNTRTYNELICGLCKKRKVHKAMALLNKM--LERKLSPSLITYNSLIHGQCK 451
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI L ++ V++A+A +M + + P + YN +I+ C+V + A LL
Sbjct: 404 TRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLS 463
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
M G PD +TY++ I + CK G
Sbjct: 464 LMNENGL--VPDQWTYSVFIDTLCKEG 488
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI + ++G + AL F M +PDV Y ++A G + ++
Sbjct: 578 TVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVI 637
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
+M G PD+ TYT+LI Y + G+
Sbjct: 638 AKMNEEGIL--PDLVTYTVLIDGYARLGL 664
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+ A F M Q C+ + +Y +I+ LC G N+A L M C P V TY
Sbjct: 245 VDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTED--NCCPTVRTY 302
Query: 245 TILI 248
T+LI
Sbjct: 303 TVLI 306
>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 527
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + F + + D LKEM RG V T T L+ L + +++A A
Sbjct: 324 NTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVT--YTSLLDALCKNQNLDKATA 381
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F +MK+ +P+ Y Y +I+ LC+ G A+ L + + + G C +V+TY ++IS
Sbjct: 382 LFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKG--CRINVWTYNVMISG 439
Query: 251 YCKYGM 256
CK GM
Sbjct: 440 LCKEGM 445
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+N+A + Y ++ F N +T + F + + L EM + V T T
Sbjct: 166 VNEAYDLYSEMDAR-GIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYT 224
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ L+ L +EG V EA M + +P+V +YN +++ C +G A+ + M
Sbjct: 225 I--LMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMV 282
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
G P+VY+Y I+I CK
Sbjct: 283 QKGVN--PNVYSYNIMIDRLCK 302
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L ++ LVNEA + M P+V Y+ +I C G +A LL +M L
Sbjct: 156 IIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKN 215
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+VYTYTIL+ + CK G
Sbjct: 216 IN--PNVYTYTILMDALCKEG 234
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVT---CLIKVLGEEGLVNEALATFYRMKQ 197
+ VK + L M++ G +V+ +T+ CLI G V A F+ M Q
Sbjct: 230 LCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLI------GEVQNAKQMFHTMVQ 283
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+VY+YN++I+ LC+ ++A LL E+ P+ TY+ LI +CK G
Sbjct: 284 KGVNPNVYSYNIMIDRLCKSKRVDEAMNLLR--EVLHKNMVPNTVTYSSLIDGFCKLG 339
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L + G AL ++ RP+V YN +I+ LC+ N+A L +M+ G
Sbjct: 121 LLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARG 180
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+V TY+ LI +C G
Sbjct: 181 IF--PNVITYSTLIYGFCLAG 199
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+EA+ + P+ Y+ +I+ C++G A LL++M G P DV TY
Sbjct: 306 VDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQ--PADVVTY 363
Query: 245 TILISSYCK 253
T L+ + CK
Sbjct: 364 TSLLDALCK 372
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L +EG+++EALA +M++ C PD + ++I +L +KA LL +M
Sbjct: 432 TYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEM 491
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
R P + +N ++ +L ++ ++ A L +QM++ G PD++T ILI+ +C G T
Sbjct: 5 RDTPPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIE--PDLFTLNILINCFCHLGQMT 62
>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial; Flags: Precursor
Length = 602
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T+T LIK L EG V+EA+ RM + C+PDV YN ++N +CR G+ + A LL
Sbjct: 158 TTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLR 217
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+ME + DV+TY+ +I S C+ G
Sbjct: 218 KMEERNVK--ADVFTYSTIIDSLCRDG 242
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R + D L++M R ++ T ST+ I L +G ++ A++ F M+
Sbjct: 203 ICRSGDTSLALDLLRKMEERNVKADVFTYSTI---IDSLCRDGCIDAAISLFKEMETKGI 259
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ V YN ++ LC+ G +N LL+ M P+V T+ +L+ + K G
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDM--VSREIVPNVITFNVLLDVFVKEG 312
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 142 FARGNNVKGLWD----FLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMK 196
RG G W+ LK+M R E+V T L+ V +EG + EA + M
Sbjct: 269 LVRGLCKAGKWNDGALLLKDMVSR---EIVPNVITFNVLLDVFVKEGKLQEANELYKEMI 325
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P++ YN +++ C ++A +L+ M +C PD+ T+T LI YC
Sbjct: 326 TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRN--KCSPDIVTFTSLIKGYC 379
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + +K + +EM +G L T L+ L + G + +AL F +++ +
Sbjct: 413 FCQSGKIKLAEELFQEMV--SHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 470
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ Y +I +C+ G A L + G + P+V TYT++IS CK G
Sbjct: 471 LGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVK--PNVMTYTVMISGLCKKG 522
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I+ + + G V +A F + +P+V Y V+I+ LC+ G+ ++A LL +ME
Sbjct: 477 TTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 536
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G P+ TY LI ++ + G
Sbjct: 537 DGN--APNDCTYNTLIRAHLRDG 557
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
R + KEM +G + +S VT L++ L + G N+ M
Sbjct: 238 LCRDGCIDAAISLFKEMETKG----IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE 293
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P+V +NV+++ + G +A L ++M G P++ TY L+ YC
Sbjct: 294 IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGI--SPNIITYNTLMDGYC 344
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 122 VERFFHFFHNEVTCK-EMGIVF--------ARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
+E+ F + K ++GIV +G V+ W+ + +G V T TV
Sbjct: 454 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 513
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+I L ++G ++EA +M++ P+ YN +I A R G+ + L+E+M+
Sbjct: 514 --MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKS 571
Query: 233 PGF 235
GF
Sbjct: 572 CGF 574
>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
Length = 528
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 9/115 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + +V + L E++RRG ++VT STV I L + G + +A+ F M C
Sbjct: 189 FCKSRDVGRGLELLGEVTRRGFTPDIVTYSTV---IDGLCKAGRLRDAVDIFEEMS---C 242
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P YN +I CR G+ ++A LL +M +C PDV TYT L+S++CK G
Sbjct: 243 APTAITYNSLIGGYCRAGDMDEAIRLLGKM--VDDKCAPDVVTYTTLMSAFCKMG 295
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G+ V + ++EM RG T + L+ L + ++EA+A M + C P V
Sbjct: 87 GDRVDDARELVEEMLHRGMA--ANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTV 144
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN +I CR ++A +EQM G C PD+ TYT LI +CK
Sbjct: 145 VTYNSIITGFCRARRVDEAHGFMEQMVAEG--CHPDIITYTALIGGFCK 191
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 25/180 (13%)
Query: 89 NIANNVLVLGPAAYRN--PQKVTL-----GINKATEFYHWVERFFHFFHNEVTCKEMGIV 141
++ + +LG R P VT G+ KA V+ F E++C I
Sbjct: 194 DVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIF-----EEMSCAPTAIT 248
Query: 142 FARGNNVKGLWDFLKEMSR--RGNGELVTTS------TVTCLIKVLGEEGLVNEALATFY 193
+ N++ G + +M R G++V T T L+ + G +++A F
Sbjct: 249 Y---NSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQ 305
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M + PDV + +++ LC G A LLE++ G CPP +YTY ++ YCK
Sbjct: 306 QMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRG--CPPTIYTYNCVVDGYCK 363
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++ D +EMS T T LI G ++EA+ +M +C
Sbjct: 224 LCKAGRLRDAVDIFEEMSC-----APTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCA 278
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV Y +++A C++G + A L +QM + PDV T+T L+ C G
Sbjct: 279 PDVVTYTTLMSAFCKMGRLDDAYELFQQM--VANKLSPDVVTFTSLVDGLCGEG 330
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ L EG + +AL + + C P +Y YN V++ C+ KA L+
Sbjct: 318 TFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADF 377
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF P+ TY IL++ C+ G
Sbjct: 378 RSRGF--VPNTVTYNILVAGCCRAG 400
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA--LATFYRMKQFRCRPDVYAYNV 209
+ L+E++RRG T T C++ + V +A L +R + F P+ YN+
Sbjct: 336 LELLEEITRRGCPP--TIYTYNCVVDGYCKANQVRKAEELVADFRSRGFV--PNTVTYNI 391
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ CR G ++A L+Q+ G CP V Y I++ + C+ G
Sbjct: 392 LVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDG 437
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R V F+++M G + T T LI + V L + +
Sbjct: 154 FCRARRVDEAHGFMEQMVAEGCHPDIITYTA--LIGGFCKSRDVGRGLELLGEVTRRGFT 211
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ Y+ VI+ LC+ G A + E+M C P TY LI YC+ G
Sbjct: 212 PDIVTYSTVIDGLCKAGRLRDAVDIFEEMS-----CAPTAITYNSLIGGYCRAG 260
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 2/129 (1%)
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187
F N VT + R +L +++ G + + ++ L +G ++
Sbjct: 382 FVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDD 441
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ + M Q P + V+ ALC+ +A LLE+M G P T +
Sbjct: 442 AVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGH--TPGPGTCDAV 499
Query: 248 ISSYCKYGM 256
+S+YC+ GM
Sbjct: 500 VSAYCRAGM 508
>gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g77360, mitochondrial; Flags: Precursor
gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 517
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 32/213 (15%)
Query: 45 IESVADVLKSIPRFFFQSPR----SIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPA 100
+ VADV K+I + SP+ S Q+G R + ++ +++ N G
Sbjct: 65 VRDVADVAKNISKVLMSSPQLVLDSALDQSGLR--------VSQEVVEDVLNRFRNAGLL 116
Query: 101 AYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSR 160
YR F+ W E+ H+ H+ M A+ K +WD + M +
Sbjct: 117 TYR--------------FFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRK 162
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ +++ T +++ V+EA+ F M+++ P++ A+N +++ALC+ N
Sbjct: 163 K---KMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNV 219
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
KA+ + E M R PD TY+IL+ + K
Sbjct: 220 RKAQEVFENMR---DRFTPDSKTYSILLEGWGK 249
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ NV+ + + M R + + T + L++ G+E + +A F M C
Sbjct: 213 LCKSKNVRKAQEVFENMRDRFTPD---SKTYSILLEGWGKEPNLPKAREVFREMIDAGCH 269
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
PD+ Y+++++ LC+ G ++A ++ M+ P C P + Y++L+ +Y
Sbjct: 270 PDIVTYSIMVDILCKAGRVDEALGIVRSMD-PSI-CKPTTFIYSVLVHTY 317
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + ++ +L + G V+EAL M C+P + Y+V+++ +A +M
Sbjct: 274 TYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEM 333
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E G + DV + LI ++CK
Sbjct: 334 ERSGMK--ADVAVFNSLIGAFCK 354
>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
Length = 479
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE-EGLVNEALATFYRMKQFR 199
+ N+VK F KEM +G V + + LIK L + E V A F M
Sbjct: 129 ILVEENHVKRAIGFYKEMREKGIPPTVVSLNI--LIKALCKNEETVESAFRLFREMPNRG 186
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C+PD Y Y +IN LC++G ++A+ LL++ME G P V +YT LI C+
Sbjct: 187 CQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGL--SPSVVSYTSLIHGLCQ 238
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
V+ + +EM RG + T LI L + G +++A M++ P V +Y
Sbjct: 172 VESAFRLFREMPNRGCQP--DSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSY 229
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+I+ LC+ N ++A LLE+M + G P+V+TY+ L+ CK G
Sbjct: 230 TSLIHGLCQSNNLDEAIELLEEMIINGIE--PNVFTYSSLMDGLCKSG 275
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ NN+ + L+EM NG T + L+ L + G ++A+ M + R
Sbjct: 236 LCQSNNLDEAIELLEEMII--NGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLL 293
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P++ Y+ +IN LC+ G +A +L++M L G + PD Y +IS C
Sbjct: 294 PNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLK--PDAGMYGRIISGLC 342
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L EM +G V + T LI L + ++EA+ M P+V+ Y+ +++
Sbjct: 212 ELLDEMEEKGLSPSVVS--YTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMD 269
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G+ ++A LLE M R P++ TY+ LI+ CK G
Sbjct: 270 GLCKSGHSSQAMELLEVM--VRRRLLPNMVTYSTLINGLCKEG 310
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
+VT ST LI L +EG EA+ RM+ +PD Y +I+ LC N+ +A
Sbjct: 296 MVTYST---LINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAAN 352
Query: 226 LLEQMELPGFRCPPDVYTYT 245
+++M L G P+ ++T
Sbjct: 353 FIDEMALGGI--SPNRASWT 370
>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Glycine max]
Length = 892
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R +G T T T L+ L E G EAL+ F M++ C P+VY Y V+I+ LC+ G
Sbjct: 282 REDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRM 341
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
++A +L +M G P V + LI SYCK GM
Sbjct: 342 DEALKMLNEMVEKGV--APSVVPFNALIGSYCKRGM 375
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R ++V+ M RR + T LI L E G ++EAL + RM++ C
Sbjct: 234 YCRNDDVERACGVFCVMPRR------NAVSYTNLIHGLCEAGKLHEALEFWARMREDGCF 287
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P V Y V++ ALC G +A L +M G C P+VYTYT+LI CK G
Sbjct: 288 PTVRTYTVLVCALCESGRELEALSLFGEMRERG--CEPNVYTYTVLIDYLCKEG 339
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L +EG V +A+ M +F +P ++ YN+++ + + +F++A +L ++
Sbjct: 537 TFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRL 596
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G++ P+V TYT I +YC G
Sbjct: 597 ISSGYQ--PNVVTYTAFIKAYCSQG 619
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 11/127 (8%)
Query: 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188
+NE+ C F RG ++ L +M + + ++VT +T LI L E G+V+ A
Sbjct: 398 YNELICG-----FCRGKSMDRAMALLNKMVESKLSPDVVTYNT---LIHGLCEVGVVDSA 449
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
F M + PD + +N + LCR+G +A +LE ++ + + + YT LI
Sbjct: 450 SRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVK--ANEHAYTALI 507
Query: 249 SSYCKYG 255
YCK G
Sbjct: 508 DGYCKAG 514
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EM RG V T TV LI L +EG ++EAL M + P V +N +I + C+
Sbjct: 315 EMRERGCEPNVYTYTV--LIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCK 372
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
G A +L ME + P+V TY LI +C+
Sbjct: 373 RGMMEDAVGVLGLME--SKKVCPNVRTYNELICGFCR 407
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F +M + C P++ Y+ +IN LC+VG N A L M G P + L+SS
Sbjct: 727 FEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGI--SPSEIIHNSLLSSC 784
Query: 252 CKYGM 256
CK GM
Sbjct: 785 CKLGM 789
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 154 FLKEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
L EM +G V S V LI + G++ +A+ M+ + P+V YN +I
Sbjct: 347 MLNEMVEKG----VAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELI 402
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
CR + ++A LL +M + PDV TY LI C+ G+
Sbjct: 403 CGFCRGKSMDRAMALLNKM--VESKLSPDVVTYNTLIHGLCEVGV 445
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 42/183 (22%)
Query: 104 NPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWD---------- 153
NP +T A F+ W+ R +F H+ T + ++ R ++ +
Sbjct: 63 NPDPLT-----ALNFFRWIRRHHNFPHSLATHHSLLLLLVRHRTLRAAENVRNSMIKSCT 117
Query: 154 ------FLKEMSRRGNGEL------------VTTSTVTCLIKVLGEEGLVNEALATFYRM 195
FL + RR N ++ ++ L+ L +V+E ++ + M
Sbjct: 118 SPHDATFLLNLLRRMNTAAAAADHQHQLAFKLSLTSYNRLLMCLSRFSMVDEMISLYKEM 177
Query: 196 KQFRCR---PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP--DVYTYTILISS 250
P++ N ++N+ C++GN AR ++ RC P D++TYT L+
Sbjct: 178 LTDNGNSVFPNLITLNTMLNSYCKLGNMAVARLFFVRI----LRCEPGPDLFTYTSLVLG 233
Query: 251 YCK 253
YC+
Sbjct: 234 YCR 236
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI + G + A + F RM C P+ +NV+I+ L + G A L+E M
Sbjct: 504 TALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDM-- 561
Query: 233 PGFRCPPDVYTYTILISSYCK 253
F P ++TY IL+ K
Sbjct: 562 AKFDVKPTLHTYNILVEEVLK 582
>gi|242064536|ref|XP_002453557.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
gi|241933388|gb|EES06533.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
Length = 390
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ NG T +I G GLV++A F M C+PDV YN +IN L + G+
Sbjct: 209 KANGVAPDVFTYNIMISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDL 268
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++A L + M+ G+ PDV+TY+ILI + K
Sbjct: 269 DEAHMLFKDMQEKGY--DPDVFTYSILIECFGK 299
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 153 DFLKEMSRRGNGELVTTST--VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
D L M +G +TT + LG+ V+ + + +MK PDV+ YN++
Sbjct: 168 DLLHMMPEKG----ITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIM 223
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I++ RVG +KA L E+M+ C PDV TY +I+ K G
Sbjct: 224 ISSFGRVGLVDKASELFEEMD--DSSCKPDVITYNSMINCLGKNG 266
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I LG+ G ++EA F M++ PDV+ Y+++I + + A L ++M
Sbjct: 254 TYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEM 313
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P++ TY IL+ ++G
Sbjct: 314 IAQG--CVPNIVTYNILLDCLERHG 336
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
K+M +G V T ++ LI+ G+ V+ A + F M C P++ YN++++
Sbjct: 274 LFKDMQEKGYDPDVFTYSI--LIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLDC 331
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
L R G +A L E ++ G PD TY+IL
Sbjct: 332 LERHGKTREAHKLYETLKQQGL--APDSITYSIL 363
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 154 FLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
FL+EM +G L+ +TV I+ LG+ +V++A+ +M + C+P+ + Y+++++
Sbjct: 32 FLEEMVSKGCVLNLIAYNTV---IEALGKNKMVDKAIFMLSKMIESDCQPNQFTYSIMLD 88
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L G ++ L E +++ VY+Y L+ + CK G
Sbjct: 89 VLATGGQLHR---LNEILDICSGHLNRSVYSY--LVKALCKSG 126
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
EA+ + M + DV YN++ +AL ++ + L ++M+ G PDV+TY I
Sbjct: 165 EAIDLLHMMPEKGITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGV--APDVFTYNI 222
Query: 247 LISSYCKYGM 256
+ISS+ + G+
Sbjct: 223 MISSFGRVGL 232
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI++ G+ G + ++ M C ++ AYN VI AL + +KA F+L +M
Sbjct: 12 TYTILIRMSGKAGKATKFVSFLEEMVSKGCVLNLIAYNTVIEALGKNKMVDKAIFMLSKM 71
Query: 231 ELPGFRCPPDVYTYTILIS 249
C P+ +TY+I++
Sbjct: 72 --IESDCQPNQFTYSIMLD 88
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ N++ + +M RG + T T LI ++G +++AL M++ +P
Sbjct: 163 KAGNLEQAVALVAQMRERG--LRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPS 220
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V YN +IN C++G + AR L+ +ME R PDV TY+ +IS YCK G
Sbjct: 221 VVCYNALINGYCKLGRMDLARELIREMEAK--RVKPDVVTYSTIISGYCKVG 270
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T + LI+ L EE +N+A F M Q +PD + Y +I+ C+ GN KA
Sbjct: 286 GVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKA 345
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
L ++M G PDV TY++LI+ K
Sbjct: 346 LSLHDEMIRKGVL--PDVVTYSVLINGLSK 373
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT M + ++G EM R G ++V+ +T L+ + G ++E+L
Sbjct: 80 NLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNT---LLSGYCKVGCLHESL 136
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
A F M Q PDV + +I+A C+ GN +A L+ QM G R + T+T LI
Sbjct: 137 AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLR--MNEVTFTALID 194
Query: 250 SYCKYG 255
+CK G
Sbjct: 195 GFCKKG 200
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L++ L G + EA+ M+ C P+ YN ++ A CR G + A ++ M
Sbjct: 12 TYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLM 71
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P++ T+ +++ CK G
Sbjct: 72 REEG-NAKPNLVTFNSMVNGLCKAG 95
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 157 EMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
EM++RG LV T T LI + G + +A+A +M++ R + + +I+ C
Sbjct: 141 EMTQRG---LVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFC 197
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G + A +E+M G + P V Y LI+ YCK G
Sbjct: 198 KKGFLDDALLAVEEMRKCGIQ--PSVVCYNALINGYCKLG 235
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+VY YN+++ ALC G +A ++ M G C P+ TY L++++C+ G
Sbjct: 8 PNVYTYNILVRALCARGRLEEAVGVVGDMR--GAGCAPNAVTYNTLVAAFCRAG 59
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 153 DFLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ ++EM ++R ++VT ST+ I + G ++ A +M + PD Y+ +I
Sbjct: 242 ELIREMEAKRVKPDVVTYSTI---ISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 298
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC N A L E M G + PD +TYT LI +CK G
Sbjct: 299 RGLCEEKRLNDACELFENMLQLGVQ--PDEFTYTTLIDGHCKEG 340
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++ A M+ R +PDV Y+ +I+ C+VGN + A L ++M G PD
Sbjct: 235 GRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVL--PDAI 292
Query: 243 TYTILISSYCK 253
TY+ LI C+
Sbjct: 293 TYSSLIRGLCE 303
>gi|414882131|tpg|DAA59262.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
Length = 1604
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ ARG VK ++D EM G + T T +I L + GLV A F M+
Sbjct: 1200 LLARGC-VKKVYDLQLEME--NEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGL 1256
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV YN ++N C+ GN +A L + G P V TY ILI YC+ G
Sbjct: 1257 LPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGL--APTVLTYNILIDGYCRLG 1309
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G L T L+ + G + EAL F +++ P V YN++I+ CR+G+
Sbjct: 1252 RAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDL 1311
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILI 248
+AR L E+M G C P+V TYTIL+
Sbjct: 1312 EEARILKEEMGEQG--CLPNVCTYTILM 1337
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 156 KEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+EM+ G V C +++VL + ++ A M + P + YN ++++
Sbjct: 1073 REMASHG----VAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDS 1128
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G +K LL++ME G C P+ TY ++I+ + G
Sbjct: 1129 FLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKG 1170
>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 804
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 23/160 (14%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
+NP LG F+ W +F + V+ + + + N + W LKE+ R G
Sbjct: 67 KNPPNSLLGF----RFFIWASKFRRL-RSWVSHNMIIDMLIKDNGFELYWQVLKEIKRCG 121
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR------ 216
++ T LI+ + ++ +A+ +F MK F C+PDV+ YN V++ + R
Sbjct: 122 FS--ISADAFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVMVRKEVVLL 179
Query: 217 -VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+G +N+ + C P++ T++ILI CK G
Sbjct: 180 ALGIYNR---------MLKLNCLPNIATFSILIDGMCKSG 210
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
++ K L EM+ RG LV T LIK + GL++EA + + + C
Sbjct: 346 LSKAGKFKDALRLLNEMTERG---LVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDC 402
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y ++I +CR G A+ + +ME G C P V T+ LI +CK G
Sbjct: 403 FSSACTYTILICGMCRSGLVGDAQQIFNEMEKHG--CYPSVVTFNALIDGFCKAG 455
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+G ++ T+++ +++ L + GL+ +A ++ P++ YN++I+ C+ GN
Sbjct: 481 QGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNI 540
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
N A L ++++L G PD TY LI+
Sbjct: 541 NGAFKLFKELQLKGL--SPDSVTYGTLING 568
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+ T T LI + GLV +A F M++ C P V +N +I+ C+ GN KA+ L
Sbjct: 405 SACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLF 464
Query: 228 EQMEL 232
+ME+
Sbjct: 465 YKMEI 469
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+CLI L +A + +M + +PDV Y +++ L + G F A LL +M
Sbjct: 305 SCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTE 364
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
G PD + Y LI YC G+
Sbjct: 365 RGL--VPDTHCYNALIKGYCDLGL 386
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T + LI + + G AL F M Q R P+ Y ++I+ LC+ + A L
Sbjct: 197 ATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLFIA 256
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M+ G C PD TY L+ +CK G
Sbjct: 257 MKDHG--CIPDSVTYNALLHGFCKLG 280
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T ++K L + G +AL M + PD + YN +I C +G ++A+ L +E+
Sbjct: 340 TIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSL--HLEI 397
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
C TYTILI C+ G+
Sbjct: 398 SKNDCFSSACTYTILICGMCRSGL 421
>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
Length = 1603
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ ARG VK ++D EM G + T T +I L + GLV A F M+
Sbjct: 1200 LLARGC-VKKVYDLQLEM--ENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGL 1256
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV YN ++N C+ GN +A L + G P V TY ILI YC+ G
Sbjct: 1257 LPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGL--APTVLTYNILIDGYCRLG 1309
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G L T L+ + G + EAL F +++ P V YN++I+ CR+G+
Sbjct: 1252 RAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDL 1311
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILI 248
+AR L E+M G C P+V TYTIL+
Sbjct: 1312 EEARILKEEMGEQG--CLPNVCTYTILM 1337
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
+M NG T TCLI E GL+ EA F M P + V+I+A CR
Sbjct: 1423 QMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCR 1482
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
GN A +M G P+ TY +LI + C+ G
Sbjct: 1483 RGNLYSAYGWFRKMLEEGVE--PNEITYNVLIHALCRMG 1519
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
+G L + T T +I G + A F +M + P+ YNV+I+ALCR+G
Sbjct: 1463 SDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQ 1522
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A +M G + YTYT+LI CK G
Sbjct: 1523 LASHHFHEMLERGLVA--NKYTYTLLIDGNCKVG 1554
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
D YN++I+ LC+ GN A+ L QM++ PD TYT LI ++C+ G+
Sbjct: 1399 DTVTYNILIHGLCKTGNLKDAKEL--QMKMVSNGLQPDCITYTCLIHAHCERGL 1450
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 156 KEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+EM+ G V C +++VL + ++ A M + P + YN ++++
Sbjct: 1073 REMASHG----VAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDS 1128
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G +K LL++ME G C P+ TY ++I+ + G
Sbjct: 1129 FLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKG 1170
>gi|297842515|ref|XP_002889139.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334980|gb|EFH65398.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 482
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 32/213 (15%)
Query: 45 IESVADVLKSIPRFFFQSPR----SIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPA 100
+ VADV K+I + SP+ S Q+G R + + +L + + G
Sbjct: 30 VRDVADVAKNISKVLMSSPQLVIDSALDQSGLRVSPEVVEDVLYRFRNA--------GLL 81
Query: 101 AYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSR 160
AYR F+ W E+ H+ H+ M A+ K +WD + M +
Sbjct: 82 AYR--------------FFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMMK 127
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ +++ T +++ V+EA+ F M+++ P++ A+N +++ALC+ N
Sbjct: 128 K---KMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNV 184
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
KA+ + E M R PD TY+IL+ + K
Sbjct: 185 RKAQEIFENMR---DRFTPDSKTYSILLEGWGK 214
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ NV+ + + M R + + T + L++ G+E + +A F M
Sbjct: 178 LCKSKNVRKAQEIFENMRDRFTPD---SKTYSILLEGWGKEPNLPKAREVFREMVDAGSL 234
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
PD+ Y+++++ LC+ G ++A ++ M+ P C P + Y++L+ +Y
Sbjct: 235 PDIVTYSIMVDILCKAGRVDEALGIVRSMD-PSI-CKPTTFIYSVLVHTY 282
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T + ++ +L + G V+EAL M C+P + Y+V+++ +A
Sbjct: 232 GSLPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTETRLEEA 291
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ME G + DV + LI ++CK
Sbjct: 292 VDTFLEMERSGMKA--DVAVFNSLIGAFCK 319
>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Vitis vinifera]
Length = 746
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 93/208 (44%), Gaps = 14/208 (6%)
Query: 61 QSPRSIGRQTGFRHRTPLKQ-----RILKKE--ADNIANNVLVLGPAAYRNPQKVTLGI- 112
Q P I G + T K+ R++ E + + +++ L P+ + TL +
Sbjct: 46 QQPIKITPNEGLKAATKTKRSQAMARLINTEPWSHELQSSLAELAPSLSKTTVLQTLQLI 105
Query: 113 ---NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL-VT 168
KA F+ WVE F HNE + M + R N+ +F+ + ++ G + +
Sbjct: 106 RTPAKALHFFRWVEAK-GFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLG 164
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
LI+ G GL E++ F MK+ P V +N +++ + + G + A+ L +
Sbjct: 165 DRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFD 224
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
+M L + PD YT+ ILI +C M
Sbjct: 225 EM-LDTYGVTPDTYTFNILIRGFCMNSM 251
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 138 MGIVFARGNN--VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
+ IV RG K L+D + + G T T LI+ +V+E F M
Sbjct: 207 LSIVLKRGRTSMAKQLFDEMLDT----YGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEM 262
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+F+C PDV YN +++ LCR G A +++ M P+V TYT LI YC
Sbjct: 263 SRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYC 319
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 162 GNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
G+G + T T+ LIK G + EA + F +M + R +PD Y+V++ +LC+ G+F
Sbjct: 371 GDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDF 430
Query: 221 NKARFLLEQME-----LPGFRCPPDVYTYTILISSYCKYG 255
+A +++ L C P V Y + C G
Sbjct: 431 RRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNG 470
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R VK + +K M ++ T T LI+ + + EAL+ M +
Sbjct: 281 LCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLK 340
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ YN +I LC +K + +LE M G PD T LI ++C G
Sbjct: 341 PNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFI-PDTCTLNTLIKAHCTMG 393
>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
Length = 745
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + + +V+ + L EMS +G + T LI L + G + +A+
Sbjct: 465 NVVTYTALTDGLCKQGDVQAANELLHEMSNKGLE--LNACTYNSLINGLCKAGYLEQAMR 522
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
T M +PDVY Y +I+ALC+ G+ ++A LL++M G + P + TY +L++
Sbjct: 523 TMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIK--PTIVTYNVLMNG 580
Query: 251 YCKYG 255
+C G
Sbjct: 581 FCMSG 585
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+ F + +V +YN+++ ALC G AR L ++M PDV TY
Sbjct: 244 LDEAIELFQELPH----KNVCSYNILLKALCDAGRVKDARQLFDEMA-----SAPDVVTY 294
Query: 245 TILISSYCKYG 255
ILI +C G
Sbjct: 295 GILIHGHCALG 305
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 50/136 (36%), Gaps = 37/136 (27%)
Query: 154 FLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L+EM +RR + V T T LI + G + EA M Q P+V Y + +
Sbjct: 418 LLQEMWARRLD---VDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTD 474
Query: 213 ALCRVGNFNKARFLLEQMELPGFR---------------------------------CPP 239
LC+ G+ A LL +M G P
Sbjct: 475 GLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKP 534
Query: 240 DVYTYTILISSYCKYG 255
DVYTYT LI + CK G
Sbjct: 535 DVYTYTTLIDALCKSG 550
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F M++ D Y +IN LCR +A LL++M R D TYT+LI Y
Sbjct: 384 FDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMW--ARRLDVDEVTYTVLIDGY 441
Query: 252 CKYG 255
CK G
Sbjct: 442 CKRG 445
>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 93/208 (44%), Gaps = 14/208 (6%)
Query: 61 QSPRSIGRQTGFRHRTPLKQ-----RILKKE--ADNIANNVLVLGPAAYRNPQKVTLGI- 112
Q P I G + T K+ R++ E + + +++ L P+ + TL +
Sbjct: 46 QQPIKITPNEGLKAATKTKRSQAMARLINTEPWSHELQSSLAELAPSLSKTTVLQTLQLI 105
Query: 113 ---NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL-VT 168
KA F+ WVE F HNE + M + R N+ +F+ + ++ G + +
Sbjct: 106 RTPAKALHFFRWVEAK-GFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLG 164
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
LI+ G GL E++ F MK+ P V +N +++ + + G + A+ L +
Sbjct: 165 DRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFD 224
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
+M L + PD YT+ ILI +C M
Sbjct: 225 EM-LDTYGVTPDTYTFNILIRGFCMNSM 251
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 138 MGIVFARGNN--VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
+ IV RG K L+D + + G T T LI+ +V+E F M
Sbjct: 207 LSIVLKRGRTSMAKQLFDEMLDT----YGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEM 262
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+F+C PDV YN +++ LCR G A +++ M P+V TYT LI YC
Sbjct: 263 SRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYC 319
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 162 GNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
G+G + T T+ LIK G + EA + F +M + R +PD Y+V++ +LC+ G+F
Sbjct: 371 GDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDF 430
Query: 221 NKARFLLEQME-----LPGFRCPPDVYTYTILISSYCKYG 255
+A +++ L C P V Y + C G
Sbjct: 431 RRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNG 470
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R VK + +K M ++ T T LI+ + + EAL+ M +
Sbjct: 281 LCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLK 340
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ YN +I LC +K + +LE M G PD T LI ++C G
Sbjct: 341 PNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFI-PDTCTLNTLIKAHCTMG 393
>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
Length = 702
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + V ++ L EM RG +++ ST LI+ L +G ++EAL F M + C
Sbjct: 121 FCKAGQVDQAFELLDEMKERGVKMDVLLHST---LIQGLCRKGRIDEALEQFKSMGE-EC 176
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMEL---PGFRCPPDVYTYTILISSYCK 253
P+V YN V+N LC+ ++A L + ME C PDV +Y+ +I + CK
Sbjct: 177 SPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCK 232
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 111/277 (40%), Gaps = 63/277 (22%)
Query: 15 VQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSI--PRFFFQSPRSIGRQTGF 72
V ++L ILK P+ + A T P E VL+ + P + + G + GF
Sbjct: 16 VAEILLGILKPGPYLCRDLAGYASTVTP---EVAGRVLQQVEDPDVAWTFFQWAGNKPGF 72
Query: 73 RH----------------RTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGIN--- 113
+H R R+LK+E L P + N T IN
Sbjct: 73 QHNAYTCAVLLNAFVKAKRHEEAHRLLKEE----------LEPLCFPNEIMYTTVINGFC 122
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGI---VFARGNNVKGL---------WDFLKEMSRR 161
KA + V++ F KE G+ V ++GL + K M
Sbjct: 123 KAGQ----VDQAFELLDEM---KERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEE 175
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-----FRCRPDVYAYNVVINALCR 216
+ ++T +TV + L + ++EAL F M++ C PDV +Y+ VI+ALC+
Sbjct: 176 CSPNVITYNTV---VNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCK 232
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+KA ++M G C P+V TY+ LI CK
Sbjct: 233 AQRVDKAYEYFKRMRAVG--CAPNVVTYSSLIDGLCK 267
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L M +G G + ++ L + +A F R+ + +P+V YNV ++
Sbjct: 276 ELLLHMKEKGFG--INIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVH 333
Query: 213 ALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G ++A R LLE +E + PDV TY+ +I +CK G
Sbjct: 334 GLCKAGRVDEAYRILLEMVE---SKVTPDVITYSSIIDGFCKAG 374
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 132 EVTCKEMGIVF---ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188
EV C+ +G F ++ W+ ++ R G + +T + + + + G +EA
Sbjct: 528 EVGCQPLGETFKILVEELYLRKKWEAASKL-LRSPGFVADAATYSLCVAEICKAGKPDEA 586
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+ +M RPD Y V+ +LC + A E+M G C P + TYT+LI
Sbjct: 587 VEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRG--CAPGLVTYTLLI 644
Query: 249 SSYCKYGM 256
C M
Sbjct: 645 GEACSADM 652
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNG------ELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
+ N + + +M +R ++++ STV I L + V++A F RM
Sbjct: 190 LCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTV---IDALCKAQRVDKAYEYFKRM 246
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
+ C P+V Y+ +I+ LC+V ++ LL M+ GF
Sbjct: 247 RAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGF 286
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
F + + + G V T V + L + G V+EA M + + PDV Y+ +I+
Sbjct: 312 FFERLLKSGKKPNVVTYNVA--VHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDG 369
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
C+ G +KA + +M + C P T+ L+ + ++
Sbjct: 370 FCKAGRMDKADDVFTRMMV--HECIPHPVTFMTLLHGFSEH 408
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+ Y VIN C+ G ++A LL++M+ G + DV ++ LI C+ G
Sbjct: 107 CFPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVK--MDVLLHSTLIQGLCRKG 160
>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
Length = 448
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 7/115 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + + + + L EM +RG +V + V +IK L + G V+ AL YR Q C
Sbjct: 43 FCKARDFQQAYRLLDEMEKRG---IVPHNAVYNTIIKGLCDNGRVDSAL-VHYRDMQRHC 98
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P V Y ++++ALC+ + A +LE M G C P+V TY LI+ +CK G
Sbjct: 99 APSVITYTILVDALCKSARISDASLILEDMIEAG--CAPNVVTYNTLINGFCKLG 151
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 14/115 (12%)
Query: 148 VKGLWD---------FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
+KGL D ++M R ++T T L+ L + +++A M +
Sbjct: 75 IKGLCDNGRVDSALVHYRDMQRHCAPSVIT---YTILVDALCKSARISDASLILEDMIEA 131
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C P+V YN +IN C++GN ++A L QM C PDV+TY ILI YCK
Sbjct: 132 GCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENS--CSPDVFTYNILIDGYCK 184
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I + + G ++ A F M C PD+Y YN++I+ CR + AR LLE+M G
Sbjct: 248 MIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG 307
Query: 235 FRCPPDVYTYTILISSYCK 253
CPPDV TY ++S CK
Sbjct: 308 --CPPDVVTYNSIVSGLCK 324
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L+EM + G +T +T L+ L + G +A M + C+P + +N++I+
Sbjct: 194 LLQEMVKYGCEPNFITYNT---LMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMID 250
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C+VG + A L + M G C PD+YTY I+IS C+
Sbjct: 251 MFCKVGQLDLAYELFQLMTDRG--CLPDIYTYNIMISGACR 289
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+++A E Y V R +F + VTC + + + L+EM R G+ V T
Sbjct: 328 VDEAYEVYE-VLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYT 386
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ LI + ++++LA F M C P V Y++VI+ LC+ LL+ M
Sbjct: 387 I--LIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTM 443
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L++M G V T LI + G ++EA+ F +M + C PDV+ YN++I+
Sbjct: 124 ILEDMIEAGCAPNVVTYNT--LINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDG 181
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ LL++M G C P+ TY L+ S K G
Sbjct: 182 YCKQERPQDGAKLLQEMVKYG--CEPNFITYNTLMDSLVKSG 221
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G + T + LI L + +++A M++ PDV AY ++I+ C+
Sbjct: 339 RNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQL 398
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+K+ +M G C P V TY+I+I CK
Sbjct: 399 DKSLAFFSEMLDKG--CVPTVITYSIVIDKLCK 429
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R N + L+ M+ G ++VT +++ + L + V+EA + ++
Sbjct: 288 CRANRIDDARQLLERMTEAGCPPDVVTYNSI---VSGLCKASQVDEAYEVYEVLRNGGYF 344
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
DV + +I+ LC+ + A LL +ME G PDV YTILI +CK
Sbjct: 345 LDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGS--APDVVAYTILIHGFCK 394
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 40/112 (35%), Gaps = 32/112 (28%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
CL+ + EA F C PD Y+ +IN C+ +F +A LL++ME
Sbjct: 3 CLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKR 62
Query: 234 GF--------------------------------RCPPDVYTYTILISSYCK 253
G C P V TYTIL+ + CK
Sbjct: 63 GIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCK 114
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
M ++ C P+ YN ++++L + G + A F L QM L C P +T+ ++I +CK
Sbjct: 197 EMVKYGCEPNFITYNTLMDSLVKSGKYIDA-FNLAQMMLRR-DCKPSHFTFNLMIDMFCK 254
Query: 254 YG 255
G
Sbjct: 255 VG 256
>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
[Arabidopsis thaliana]
gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 606
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 170 STVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
S ++C L+ L +E + + M + + +P+V+ +NVVINALC+ G NKAR ++
Sbjct: 187 SALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVM 246
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
E M++ G C P+V +Y LI YCK G
Sbjct: 247 EDMKVYG--CSPNVVSYNTLIDGYCKLG 272
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 153 DFLKEM-----SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
D LKE S +G G + TT LI + G +++ A M++ PDV Y
Sbjct: 380 DMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTY 439
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N +I LCR GN A+ L +Q+ G PD+ T+ IL+ YC+ G
Sbjct: 440 NCLIAGLCRNGNIEAAKKLFDQLTSKGL---PDLVTFHILMEGYCRKG 484
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI + ++ EAL F +K P YN++I+A C++G + L E+M
Sbjct: 368 TYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEM 427
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G PDV TY LI+ C+ G
Sbjct: 428 EREGI--VPDVGTYNCLIAGLCRNG 450
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 88 DNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN 147
++I ++LVL AY N + LG ++ + + ++CK + I + N
Sbjct: 152 NSIIADMLVL---AYANNSRFELGFEAFKR-----SGYYGYKLSALSCKPLMIALLKENR 203
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
+ KEM RR V T V +I L + G +N+A MK + C P+V +Y
Sbjct: 204 SADVEYVYKEMIRRKIQPNVFTFNV--VINALCKTGKMNKARDVMEDMKVYGCSPNVVSY 261
Query: 208 NVVINALCRVGN---FNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N +I+ C++G KA +L++M P++ T+ ILI + K
Sbjct: 262 NTLIDGYCKLGGNGKMYKADAVLKEMVENDV--SPNLTTFNILIDGFWK 308
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM R G + T CLI L G + A F ++ + PD+ +++++ C
Sbjct: 425 EEMEREG--IVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTS-KGLPDLVTFHILMEGYC 481
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R G KA LL++M G + P TY I++ YCK G
Sbjct: 482 RKGESRKAAMLLKEMSKMGLK--PRHLTYNIVMKGYCKEG 519
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
++ F M +P+V +YN +IN LC G ++A + ++M G + P++ TY L
Sbjct: 315 SMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQ--PNLITYNAL 372
Query: 248 ISSYCKYGM 256
I+ +CK M
Sbjct: 373 INGFCKNDM 381
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R N++ +++ +G +LVT L++ +G +A M + +
Sbjct: 446 LCRNGNIEAAKKLFDQLTSKGLPDLVT---FHILMEGYCRKGESRKAAMLLKEMSKMGLK 502
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P YN+V+ C+ GN A + QME R +V +Y +L+ Y + G
Sbjct: 503 PRHLTYNIVMKGYCKEGNLKAATNMRTQME-KERRLRMNVASYNVLLQGYSQKG 555
>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 907
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+ + V+ L++ L + G V EAL R+ +F P+++ YN +I++LC+ NF++A L
Sbjct: 331 SEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLF 390
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++M G CP DV TY+ILI +C+ G
Sbjct: 391 DRMGKIGL-CPNDV-TYSILIDMFCRRG 416
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G + + T T L+ L GL+ +A+ F M ++ +P+ YNV+I C GN +
Sbjct: 500 GKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMS 559
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
KA L +M G PD Y+Y LI C G +
Sbjct: 560 KAFEFLNEMIEKGI--VPDTYSYRPLIHGLCLTGQAS 594
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI + G ++ AL+ M +P VY YN +IN C+ G+ + A L+ +M
Sbjct: 404 TYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEM 463
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ P V TYT L+ YC G
Sbjct: 464 --INKKLEPTVVTYTSLMGGYCSKG 486
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ F M RPDVY Y VI +LC + + ++A+ ++ QME G C ++ Y +L
Sbjct: 211 AMELFDDMINVGIRPDVYIYTGVIRSLCELKDLSRAKEMIVQMEATG--CDVNIVPYNVL 268
Query: 248 ISSYCK 253
I CK
Sbjct: 269 IDGLCK 274
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+EA F RM + P+ Y+++I+ CR G + A L +M G + P VY Y
Sbjct: 384 DEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLK--PSVYPYN 441
Query: 246 ILISSYCKYG 255
LI+ +CK+G
Sbjct: 442 SLINGHCKFG 451
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Query: 149 KGLWDFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
KG+ D K + G L T+T LI+ +G + EA RM PD
Sbjct: 764 KGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCI 823
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +I+ LCR + KA L M G R PD Y LI C G
Sbjct: 824 TYTTMISELCRRNDVKKAIELWNSMTEKGIR--PDRVAYNTLIHGCCVAG 871
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T L+ +G +N+AL ++ M P +Y + +++ L R G A L
Sbjct: 471 TVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLF 530
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M + P+ TY ++I YC+ G
Sbjct: 531 TEM--AEWNVKPNRVTYNVMIEGYCEEG 556
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 154 FLKEMSRRG--NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
LKEM RG +++ TS +I + G EA + M C P+ Y VI
Sbjct: 669 LLKEMHDRGLKPDDVIYTS----MIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVI 724
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDV 241
N LC+ G N+A L +M PG P V
Sbjct: 725 NGLCKAGFVNEAEILCSKMR-PGNSVPNQV 753
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I+ EEG +++A M + PD Y+Y +I+ LC G ++A+ ++
Sbjct: 544 TYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDG- 602
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L C + YT L+ +C+ G
Sbjct: 603 -LHKGNCELNEICYTGLLHGFCREG 626
Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTS--TVTCLIKVLGEEGLVNEALATFYRMKQF 198
+ RG +G + E+ R G+ V+ T T +I L V +A+ + M +
Sbjct: 792 MLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEK 851
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
RPD AYN +I+ C G KA L +M G + P+ T IS+
Sbjct: 852 GIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLK--PNTETSETTISN 901
>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
Length = 724
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ FA+ +V FL + +GNG T+T+ +I LG G EA A F +K+
Sbjct: 335 VGFAKSGDVNRAMSFLAMV--QGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGG 392
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P AYN ++ + G+ A ++ +ME GF PD +TY++LI +Y G
Sbjct: 393 LMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGF--SPDEHTYSLLIDAYANAG 446
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 149 KGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
+G W L+EM R +G +I G+ ++ ALATF RM+ +PD
Sbjct: 480 RGKWQKSFQVLREM--RNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDA 537
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+N +I+ C+ G+ NKA L E M+ G C P TY I+I+S+
Sbjct: 538 VTWNTLIDCHCKSGHHNKAEELFEAMQESG--CSPCTTTYNIMINSF 582
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R +G + + LI GE+ EA + MK+ +PDV Y ++ AL RV F
Sbjct: 627 RADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKF 686
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
+K + E+M L G C PD +L S+
Sbjct: 687 DKVPAVYEEMTLSG--CTPDRKARAMLRSA 714
>gi|357127090|ref|XP_003565218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Brachypodium distachyon]
Length = 886
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEA 188
+EVTC+ + F R + + +M+R G S C ++ L ++G V EA
Sbjct: 266 DEVTCRTLVYGFCRTEELDMALEMTGDMARLG----FVPSEANCSFMLDGLRKKGRVEEA 321
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
++ + R P+++AYN ++N +C+ G F++A L+ +M G P+ TY ILI
Sbjct: 322 FRLACQLGELRMVPNIFAYNALLNNMCKNGMFSEADRLVNEMSDKGLE--PNEVTYAILI 379
Query: 249 SSYCKYGM 256
S CK GM
Sbjct: 380 HSLCKRGM 387
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ G + ++M+ +G T T T LI + ++EA F +M +
Sbjct: 452 LCRKGDLSGAVELHRKMAEKGVA--WNTYTFTALINGFCKAKKMDEASRLFNKMTESNLE 509
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P+ +N VI C VG+ KA L +QM G PD YTY LIS C
Sbjct: 510 PNEVTFNAVIEGYCLVGDIRKAFQLYDQMMCRGL--TPDNYTYRSLISGLC 558
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186
HF N T FA N++ D M + G L +V LIK + G +
Sbjct: 717 HFLPNSYTFNCFLDYFATEGNLETAKDLYFAMLQ---GFLANIVSVNTLIKGFCKVGQIQ 773
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
EA+ R + PD +Y+ VI+ LC+ G+ N+A L +M G + PD+ Y I
Sbjct: 774 EAIDLISRSTENGFFPDCISYSTVIHELCKKGDINEAIELWNEMLYKGVK--PDIVAYNI 831
Query: 247 LI 248
LI
Sbjct: 832 LI 833
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+ EMS +G T + LI L + G++++AL RM++ R VY YN +IN
Sbjct: 359 LVNEMSDKGLEPNEVTYAI--LIHSLCKRGMMDDALCMLDRMREKGVRMTVYPYNSLINC 416
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ + + A L +M G P+ +Y+ +I+ C+ G
Sbjct: 417 CCKKDDLDMAMGFLSEMVEIGL--TPNAASYSPVIAGLCRKG 456
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G +T LI ++ ++ A+ M + P+ +Y+ VI LCR G+
Sbjct: 399 REKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRKGDL 458
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ A L +M G + YT+T LI+ +CK
Sbjct: 459 SGAVELHRKMAEKGV--AWNTYTFTALINGFCK 489
>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 586
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G T+T T LI+ L EG + +AL F +M +P+V Y +IN LC+VGN N A
Sbjct: 134 GHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAA 193
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LL ME C PDV YT +I S CK
Sbjct: 194 IRLLRSMEQG--NCQPDVVVYTSIIDSLCK 221
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
+G++ +T L+ L ++ ++EA+A ++ PD+ Y +VI+ +CR G
Sbjct: 411 AHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELE 470
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
AR + + G R P+V TYTI+I+ C+ G+
Sbjct: 471 AARDIFSNLSSKGLR--PNVRTYTIMINGLCRRGL 503
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 144 RGNNVKG-LWDFLKEMSRR-GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
RG V+G + D L + G G T LI L + G N A+ M+Q C+
Sbjct: 147 RGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQ 206
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
PDV Y +I++LC+ +A L +M G PD++TYT LI S C
Sbjct: 207 PDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGIS--PDIFTYTSLIHSLC 255
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + +A+A F+ M PD+ Y ++++ LC+ + ++A LL+ +E G PD+
Sbjct: 397 GRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIE--GSNMDPDIQ 454
Query: 243 TYTILISSYCKYG 255
YTI+I C+ G
Sbjct: 455 IYTIVIDGMCRAG 467
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ D +S +G V T T+ +I L GL++EA F M C
Sbjct: 463 MCRAGELEAARDIFSNLSSKGLRPNVRTYTI--MINGLCRRGLLDEANKLFMEMDGNGCS 520
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD YN + L + +A LL++M GF DV T T+L+ C
Sbjct: 521 PDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFS--ADVSTTTLLVEMLCD 570
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++AL++F RM P +N ++ ++ + + L QM+ F PPDVYT
Sbjct: 50 LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMD--SFGIPPDVYTL 107
Query: 245 TILISSYC 252
ILI+S+C
Sbjct: 108 NILINSFC 115
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L ++ V EA F +M PD++ Y +I++LC + + LL QM
Sbjct: 213 TSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQM-- 270
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+ PDV ++ ++ + CK G
Sbjct: 271 INSKIMPDVVIFSTVVDALCKEG 293
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I + G + A F + RP+V Y ++IN LCR G ++A L ME+
Sbjct: 457 TIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLF--MEM 514
Query: 233 PGFRCPPDVYTY 244
G C PD TY
Sbjct: 515 DGNGCSPDGCTY 526
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A + ++ + +PD + +I LC G A L ++M GF+ P+V TY L
Sbjct: 123 AFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQ--PNVVTYGTL 180
Query: 248 ISSYCKYG 255
I+ CK G
Sbjct: 181 INGLCKVG 188
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+M + PDV ++ V++ALC+ G +A +++ M + G P+V TY L+ +C
Sbjct: 269 QMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVE--PNVVTYNALMDGHC 325
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M F PDVY N++IN+ C + A +L ++ G + PD T+T LI C
Sbjct: 94 QMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQ--PDTATFTTLIRGLCV 151
Query: 254 YG 255
G
Sbjct: 152 EG 153
>gi|225189441|emb|CAR70004.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
[Arabidopsis thaliana]
Length = 278
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T+T LIK L EG V+EA+ RM + C+PDV YN ++N +CR G+ + A LL
Sbjct: 158 TTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLR 217
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+ME + DV+TY+ +I S C+ G
Sbjct: 218 KMEERNVK--ADVFTYSTIIDSLCRDG 242
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
G + AL +M++ + DV+ Y+ +I++LCR G + A L ++ME G + V
Sbjct: 206 SGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIK--SSV 263
Query: 242 YTYTILISSYCKYG 255
TY L+ CK G
Sbjct: 264 VTYNSLVRGLCKAG 277
>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI L + G +AL F M C+PDVY Y +IN LC++G A L+
Sbjct: 160 TIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLI 219
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++M G C PDV TY+ LI S CK
Sbjct: 220 KKMGEVG--CQPDVVTYSTLIDSLCK 243
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + ++ + K+M NG L T + L++ ++G + +A F M+ +
Sbjct: 416 FCQLGKLREARELFKDM--HTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLK 473
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P++ Y ++I+++C+ GN N AR L ++ + G + PDV YT +I+ CK G+
Sbjct: 474 PNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQ--PDVQIYTTIINGLCKEGL 526
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+K+M G ++VT ST LI L ++ LVNEAL F MK P V +Y +I
Sbjct: 218 LIKKMGEVGCQPDVVTYST---LIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQ 274
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC + +A +L +M PD+ T+++LI +CK G
Sbjct: 275 GLCSFSRWKEASAMLNEM--TSLNIMPDIVTFSLLIDIFCKEG 315
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T+ LI V+ + ++ + +P + + +IN LC+ G F +A L +
Sbjct: 126 TCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFD 185
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
M G C PDVYTYT +I+ CK G
Sbjct: 186 DMVARG--CQPDVYTYTTIINGLCKMG 210
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
++ CKE ++ A+G LK M+ G V T L+ + V EA
Sbjct: 309 DIFCKEGNVLEAQG--------VLKTMTEMGVEPNVIT--YNSLMHGYSLQMEVVEARKL 358
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F M C+PDV++Y+++IN C V ++A+ L +M G P+ +YT LI ++
Sbjct: 359 FDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGL--TPNTVSYTTLIHAF 416
Query: 252 CKYG 255
C+ G
Sbjct: 417 CQLG 420
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI + + G +N A F + +PDV Y +IN LC+ G ++A +ME
Sbjct: 480 TILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEE 539
Query: 233 PGFRCPPDVYTYTILISSYCKY 254
G CPP+ ++Y ++I + ++
Sbjct: 540 DG--CPPNEFSYNVIIRGFLQH 559
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI + +EG V EA M + P+V YN +++ +AR L + M
Sbjct: 303 TFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVM 362
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
G C PDV++Y+ILI+ YC
Sbjct: 363 ITRG--CKPDVFSYSILINGYC 382
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T + T LI + G + EA F M PD+ Y+V++ C+ G KA L
Sbjct: 406 TVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFR 465
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
M+ G P++ YTILI S CK G
Sbjct: 466 AMQ--GTYLKPNLVMYTILIDSMCKSG 490
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I L + G A +M + C+PDV Y+ +I++LC+ N+A + M
Sbjct: 198 TYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYM 257
Query: 231 ELPGFRCPPDVYTYTILISSYCKY 254
+ G P V +YT LI C +
Sbjct: 258 KAKGI--SPTVVSYTSLIQGLCSF 279
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L +EGL++EAL F +M++ C P+ ++YNV+I + + ++A L+ +M
Sbjct: 515 TTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRD 574
Query: 233 PGF 235
GF
Sbjct: 575 KGF 577
>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
Length = 585
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T+T T LI+ L EG + +AL F +M +P+V Y +IN LC+VGN N A LL
Sbjct: 137 TATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLR 196
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
ME C PDV YT +I S CK
Sbjct: 197 SMEQG--NCQPDVVVYTSIIDSLCK 219
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
+G++ +T L+ L ++ ++EA+A ++ PD+ Y +VI+ +CR G
Sbjct: 410 AHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELE 469
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
AR + + G R P+V TYTI+I+ C+ G+
Sbjct: 470 AARDIFSNLSSKGLR--PNVRTYTIMINGLCRRGL 502
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 144 RGNNVKG-LWDFLKEMSRR-GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
RG V+G + D L + G G T LI L + G N A+ M+Q C+
Sbjct: 145 RGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQ 204
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
PDV Y +I++LC+ +A L +M G PD++TYT LI S C
Sbjct: 205 PDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGIS--PDIFTYTSLIHSLC 253
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+EM ++ EL+ T T L+ L G + +A+A F+ M PD+ Y ++++
Sbjct: 369 LFEEMCQK---ELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLD 425
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ + ++A LL+ +E G PD+ YTI+I C+ G
Sbjct: 426 YLCKKSHLDEAMALLKTIE--GSNMDPDIQIYTIVIDGMCRAG 466
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ D +S +G V T T+ +I L GL++EA F M C
Sbjct: 462 MCRAGELEAARDIFSNLSSKGLRPNVRTYTI--MINGLCRRGLLDEANKLFMEMDGNGCS 519
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD YN + L + +A LL++M GF DV T T+L+ C
Sbjct: 520 PDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFS--ADVSTTTLLVEMLCD 569
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++AL++F RM P +N ++ ++ + + L QM+ F PPDVYT
Sbjct: 48 LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMD--SFGIPPDVYTL 105
Query: 245 TILISSYC 252
ILI+S+C
Sbjct: 106 NILINSFC 113
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L ++ V EA F +M PD++ Y +I++LC + + LL QM
Sbjct: 211 TSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQM-- 268
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+ PDV ++ ++ + CK G
Sbjct: 269 INSKIMPDVVIFSTVVDALCKEG 291
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I + G + A F + RP+V Y ++IN LCR G ++A L ME+
Sbjct: 456 TIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLF--MEM 513
Query: 233 PGFRCPPDVYTY 244
G C PD TY
Sbjct: 514 DGNGCSPDGCTY 525
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM---ELPGFRCPPDV 241
++EA+ F M P+V +YN +IN C++ +KA +L E+M EL P+
Sbjct: 328 MDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKEL-----IPNT 382
Query: 242 YTYTILISSYCKYG 255
TY L+ C G
Sbjct: 383 VTYNTLMHGLCHVG 396
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A + ++ + +PD + +I LC G A L ++M GF+ P+V TY L
Sbjct: 121 AFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQ--PNVVTYGTL 178
Query: 248 ISSYCKYG 255
I+ CK G
Sbjct: 179 INGLCKVG 186
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A F M Q P+ YN +++ LC VG A L +M G PD+ TY
Sbjct: 363 MDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQI--PDLATY 420
Query: 245 TILISSYCK 253
IL+ CK
Sbjct: 421 RILLDYLCK 429
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+M + PDV ++ V++ALC+ G +A +++ M + G P+V TY L+ +C
Sbjct: 267 QMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVE--PNVVTYNALMDGHC 323
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M F PDVY N++IN+ C + A +L ++ G + PD T+T LI C
Sbjct: 92 QMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQ--PDTATFTTLIRGLCV 149
Query: 254 YG 255
G
Sbjct: 150 EG 151
>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 670
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 10/139 (7%)
Query: 125 FFHFFHNEVTCKE--------MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLI 176
FFH N++ CK+ + ++ G+ +L G T +I
Sbjct: 146 FFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLII 205
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
K L + G ++ A+ TF M C PDV+ Y+ ++N LC+ ++A FLL++M+ G
Sbjct: 206 KALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEG-- 263
Query: 237 CPPDVYTYTILISSYCKYG 255
C P+ T+ +LI + K G
Sbjct: 264 CLPNPVTFNVLIDALSKNG 282
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F +G++ K + + + MS+ +V S L+ L E G + EAL + M +
Sbjct: 454 FKKGDSQKAILVWKEMMSQDMRHNVVCCSV---LLNGLCESGRLREALTVWTHMLGEGLK 510
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDV AY+ +I LC VG+ +K L +M+ + PDV TY IL ++ C+
Sbjct: 511 PDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCR 562
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK--QFRCRPDVYAYNVVINALCRVGN 219
G G + +IK L + G V++ L FY M+ + + RPDV YN++ NALCR N
Sbjct: 506 GEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDN 565
Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+A LL M G C PD T I + +
Sbjct: 566 LTRAIDLLNSMLDEG--CDPDSLTCNIFLET 594
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
D +EM + N ++ T ST L+ L +E V+EA+ M+ C P+ +NV+I
Sbjct: 219 DTFREMPLKNCNPDVFTYST---LMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLI 275
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+AL + G+ ++A L++ M L G C P+ TY LI C G
Sbjct: 276 DALSKNGDLSRAAKLVDNMFLKG--CVPNEVTYNTLIHGLCLKG 317
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
MS G+ + LI L +EG A+ + M + C+P+V Y I+ LCR
Sbjct: 362 MSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRD 421
Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++A +L++M GF P+ +TY+ L+ + K G
Sbjct: 422 EKPDEAEDILQEMLSKGFL--PNAFTYSSLMKGFFKKG 457
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM + G L T LI L + G ++ A M C P+ YN +I+
Sbjct: 255 LLDEM--QAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHG 312
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC G +KA LLE+M +C P+ TY +I+ K
Sbjct: 313 LCLKGKLDKALSLLEKM--VSSKCVPNQVTYGTIINGLVK 350
>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 646
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 10/139 (7%)
Query: 125 FFHFFHNEVTCKE--------MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLI 176
FFH N++ CK+ + ++ G+ +L G T +I
Sbjct: 122 FFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLII 181
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
K L + G ++ A+ TF M C PDV+ Y+ ++N LC+ ++A FLL++M+ G
Sbjct: 182 KALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEG-- 239
Query: 237 CPPDVYTYTILISSYCKYG 255
C P+ T+ +LI + K G
Sbjct: 240 CLPNPVTFNVLIDALSKNG 258
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F +G++ K + + + MS+ +V S L+ L E G + EAL + M +
Sbjct: 430 FKKGDSQKAILVWKEMMSQDMRHNVVCCSV---LLNGLCESGRLREALTVWTHMLGEGLK 486
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDV AY+ +I LC VG+ +K L +M+ + PDV TY IL ++ C+
Sbjct: 487 PDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCR 538
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK--QFRCRPDVYAYNVVINALCRVGN 219
G G + +IK L + G V++ L FY M+ + + RPDV YN++ NALCR N
Sbjct: 482 GEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDN 541
Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+A LL M G C PD T I + +
Sbjct: 542 LTRAIDLLNSMLDEG--CDPDSLTCNIFLET 570
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
D +EM + N ++ T ST L+ L +E V+EA+ M+ C P+ +NV+I
Sbjct: 195 DTFREMPLKNCNPDVFTYST---LMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLI 251
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+AL + G+ ++A L++ M L G C P+ TY LI C G
Sbjct: 252 DALSKNGDLSRAAKLVDNMFLKG--CVPNEVTYNTLIHGLCLKG 293
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
MS G+ + LI L +EG A+ + M + C+P+V Y I+ LCR
Sbjct: 338 MSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRD 397
Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++A +L++M GF P+ +TY+ L+ + K G
Sbjct: 398 EKPDEAEDILQEMLSKGFL--PNAFTYSSLMKGFFKKG 433
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM + G L T LI L + G ++ A M C P+ YN +I+
Sbjct: 231 LLDEM--QAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHG 288
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC G +KA LLE+M +C P+ TY +I+ K
Sbjct: 289 LCLKGKLDKALSLLEKM--VSSKCVPNQVTYGTIINGLVK 326
>gi|242043100|ref|XP_002459421.1| hypothetical protein SORBIDRAFT_02g004410 [Sorghum bicolor]
gi|241922798|gb|EER95942.1| hypothetical protein SORBIDRAFT_02g004410 [Sorghum bicolor]
Length = 735
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 19/205 (9%)
Query: 67 GRQTGFRHRTP--------LKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATE- 117
GRQ GFRH P L L AD + + + G + + + ++ A
Sbjct: 158 GRQKGFRHCFPAFHALASLLSAAGLPAAADQLPDLMRAHGKPVSHSQLTLLVRLHTAARR 217
Query: 118 ---FYHWVERFFHFFHNEV---TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
H + RF H F + C + A +V+ EMS G + T
Sbjct: 218 PLRALHALRRFRHEFDVQPQVHACNRVLGALAAAGHVEDALKLFDEMSEGGVQPIPVTFA 277
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ +++ L G+ + L RM+ CRPDV+ Y ++ + R G + + E+ME
Sbjct: 278 I--VVRALAHAGMTDRLLEMIGRMRNEVCRPDVFVYTALVKTMVRRGYMDGCIRVWEEME 335
Query: 232 LPGFRCPPDVYTYTILISSYCKYGM 256
G PD Y ++ +C GM
Sbjct: 336 KDGVE--PDTMAYATMVGGFCNTGM 358
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
DFL EM +G ++VT +T+ + LG+ +NEA+ F +M+Q C+PDV AYN +I
Sbjct: 324 DFLSEMVDQGIPPDVVTYTTILHGLCYLGQ---LNEAIRLFKKMEQKGCKPDVVAYNTII 380
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++LC+ N A L +M G PP+ TY+ ++ +C G
Sbjct: 381 DSLCKDRLVNDAMEFLSEMVDRGI--PPNAVTYSTILHGFCNLG 422
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 148 VKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
V DFL EM RG + +T +++ + LG+ +NEA F RM+Q C+PDV
Sbjct: 249 VNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQ---LNEATRLFKRMEQNGCKPDVVT 305
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN++I++L + N A L +M G PPDV TYT ++ C G
Sbjct: 306 YNIIIDSLYKDRLVNDAADFLSEMVDQGI--PPDVVTYTTILHGLCYLG 352
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
KEM G + T T + L+ L +EG+V+EA F M + P++Y YN ++N
Sbjct: 430 LFKEMV--GRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNG 487
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C N+AR + E M G C PD+++Y ILI+ YC
Sbjct: 488 YCLRCKMNEARKVFEIMVGKG--CAPDLHSYNILINGYC 524
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + EG + A+ + M + PDV +YN +IN LC GN N A + ++M
Sbjct: 165 TFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKM 224
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E G C P+V TY +I S CK
Sbjct: 225 EQNG--CKPNVVTYNTIIDSLCK 245
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
K M + G V T + +I L ++ LVN+A M PDV Y +++
Sbjct: 290 LFKRMEQNGCKPDVVTYNI--IIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHG 347
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC +G N+A L ++ME G C PDV Y +I S CK
Sbjct: 348 LCYLGQLNEAIRLFKKMEQKG--CKPDVVAYNTIIDSLCK 385
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 148 VKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
+K + EM R G+ ++++ +T LI L G N A+ F +M+Q C+P+V
Sbjct: 179 IKVAVELYNEMVRSGHEPDVISYNT---LINGLCNSGNTNMAVHVFKKMEQNGCKPNVVT 235
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN +I++LC+ N A L +M G PPD TY ++ C G
Sbjct: 236 YNTIIDSLCKDRLVNDAMDFLSEMVGRGI--PPDAITYNSIVHGLCCLG 282
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 156 KEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
K+M + G +VT +T+ I L ++ LVN+A+ M PD YN +++ L
Sbjct: 222 KKMEQNGCKPNVVTYNTI---IDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGL 278
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C +G N+A L ++ME G C PDV TY I+I S K
Sbjct: 279 CCLGQLNEATRLFKRMEQNG--CKPDVVTYNIIIDSLYK 315
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+NEA F M C PD+++YN++IN C +KA+ LL QM + + P+ TY
Sbjct: 494 MNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVK--KLTPNTVTY 551
Query: 245 TILISSYCKYG 255
++ C G
Sbjct: 552 NTIMKGLCYVG 562
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G L T T + L+ L + G ++EAL F MK+ + PD+ Y ++I + G
Sbjct: 577 SGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEV 636
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
A+ L ++ G + PP TY ++I K G+
Sbjct: 637 AKGLFSKLSADGIQ-PPG-RTYNVMIKGLLKEGLS 669
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++ALA+FYRM + RP + + + ++ ++ ++ +L QM+L F VY+
Sbjct: 74 VDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDL--FGVTHTVYSL 131
Query: 245 TILISSYCK 253
ILI+ C+
Sbjct: 132 NILINCLCR 140
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A A +M + P+ YN ++ LC VG A+ L ++M G P + TY
Sbjct: 529 MDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGML--PTLMTY 586
Query: 245 TILISSYCKYG 255
+IL++ CK+G
Sbjct: 587 SILLNGLCKHG 597
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T ++ LI L V+ A++ + +M + +PDV + +IN +C G A L
Sbjct: 127 TVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELY 186
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M G PDV +Y LI+ C G
Sbjct: 187 NEMVRSGHE--PDVISYNTLINGLCNSG 212
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T ++K L G + +A F +M P + Y++++N LC+ G+ ++A L +
Sbjct: 548 TVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFK 607
Query: 229 QMELPGFRCPPDVYTYTILISS 250
M+ + PD+ YTILI
Sbjct: 608 SMKEK--KLEPDIILYTILIEG 627
>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL-EQMELP 233
LI+ L G +++A F M F C PD+ +YN +IN CRV +K LL E M +
Sbjct: 220 LIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIK 279
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G PDV TYT +IS YCK G
Sbjct: 280 GV--SPDVITYTSIISGYCKLG 299
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 6/145 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKE-MSRRGNGELVTTS 170
I+KA EF+ + F F + V+ + F R N + D LKE M +G V T
Sbjct: 230 IDKAFEFFQNMGNF-GCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVIT- 287
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I + G + A F M +P+ + +NV+I+ +VGN A + E+M
Sbjct: 288 -YTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKM 346
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L G C PDV T+T LI YC+ G
Sbjct: 347 LLLG--CLPDVVTFTSLIDGYCREG 369
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+AR + +FL E+ G V+ L+ +L ++ LV+EA+ F +
Sbjct: 154 YARMGKLDSAKNFLNEV--HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFV 211
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDVY++N++I LCR+G +KA + M F C PD+ +Y LI+ +C+
Sbjct: 212 PDVYSFNILIRGLCRIGEIDKAFEFFQNM--GNFGCFPDIVSYNTLINGFCR 261
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI G+ G + A+ + +M C PDV + +I+ CR G N+ L E+M
Sbjct: 322 TFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEM 381
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
++ P+VYTY +LI++ CK
Sbjct: 382 KVRNL--SPNVYTYAVLINALCK 402
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
LW+ EM R V T V LI L +E + EA +K P + YN V
Sbjct: 377 LWE---EMKVRNLSPNVYTYAV--LINALCKENRIREARNFLRHLKSSEVVPKPFIYNPV 431
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I+ C+ G ++A F++ +M+ +C PD T+TILI C G
Sbjct: 432 IDGFCKAGKVDEANFIVAEMQEK--KCRPDKITFTILIIGNCMKG 474
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T T LI EG VN+ L + MK P+VY Y V+INALC+ +A
Sbjct: 350 GCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREA 409
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R L L P + Y +I +CK G
Sbjct: 410 RNFLRH--LKSSEVVPKPFIYNPVIDGFCKAG 439
>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
Length = 948
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 16/178 (8%)
Query: 86 EADNIANNVLVLGPAA----YRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIV 141
EA + N +L++G AA + + + G+ + E V+R +T M V
Sbjct: 228 EAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRM-------MTKGCMPGV 280
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLG---EEGLVNEALATFYRMKQF 198
G ++GL + R V V V+G EG + EA + M
Sbjct: 281 MTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLK 340
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
C+PD + Y+++++ LC++G + A LL +ME GF P+V TYTI++ S+CK GM
Sbjct: 341 GCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGF--APNVVTYTIVLHSFCKNGM 396
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
TT T + L G NEALA M + C PD Y VI+ALC G +A LL
Sbjct: 174 TTFTFGVAARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLL 233
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M L G C DV T+ ++ C G
Sbjct: 234 NEMLLMG--CAADVNTFDDVVRGMCGLG 259
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQF 198
+ NV L+EM+ +G + + V+ LI L +E V +AL +M
Sbjct: 530 AMCKDGNVDRSLVLLEEMAEKG----IKPNNVSYNILISELCKERRVRDALELSKQMLNQ 585
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD+ YN +IN LC++G + A LLE++ PD+ TY ILIS +CK
Sbjct: 586 GLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVH--PDIITYNILISWHCK 638
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T +I L +G +A+ M C DV +YN +I A+C+ GN +++
Sbjct: 481 GVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRS 540
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LLE+M G + P+ +Y ILIS CK
Sbjct: 541 LVLLEEMAEKGIK--PNNVSYNILISELCK 568
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LIK + ++G V+ +L M + +P+ +YN++I+ LC+ A L +QM G
Sbjct: 527 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQG 586
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD+ TY LI+ CK G
Sbjct: 587 L--APDIVTYNTLINGLCKMG 605
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 43/145 (29%)
Query: 150 GLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
G+WD L+EMS +G + + +I L ++G ++EA+ M+ C PD+
Sbjct: 395 GMWDDTRALLEEMSAKG--LTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDIC 452
Query: 206 AYNVVINALC-----------------------------------RVGNFNKARFLLEQM 230
+YN +I LC R G + A L ++M
Sbjct: 453 SYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEM 512
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L G C DV +Y LI + CK G
Sbjct: 513 ILHG--CSLDVVSYNGLIKAMCKDG 535
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
++ VL +ALA + RM + R P + + V ALCR+G N+A LL M
Sbjct: 145 VLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRANEALALLRGMARH 204
Query: 234 GFRCPPDVYTYTILISSYCKYGMQT 258
G C PD Y +I + C G T
Sbjct: 205 G--CVPDAVLYQTVIHALCDQGGVT 227
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+EM ++G V T T+ ++ + G+ ++ A M + YN +I A
Sbjct: 368 LLREMEKKGFAPNVVTYTI--VLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYA 425
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
LC+ G ++A L+++M G C PD+ +Y +I C
Sbjct: 426 LCKDGRMDEAMGLIQEMRSQG--CNPDICSYNTIIYHLC 462
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ L + G ++ A+ M++ P+V Y +V+++ C+ G ++ R LLE+M
Sbjct: 348 TYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEM 407
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + Y +I + CK G
Sbjct: 408 SAKGLTL--NSQGYNGMIYALCKDG 430
>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial [Vitis vinifera]
gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ FA+ +V FL + +GNG T+T+ +I LG G EA A F +K+
Sbjct: 264 VGFAKSGDVNRAMSFLAMV--QGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGG 321
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P AYN ++ + G+ A ++ +ME GF PD +TY++LI +Y G
Sbjct: 322 LMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGF--SPDEHTYSLLIDAYANAG 375
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 149 KGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
+G W L+EM R +G +I G+ ++ ALATF RM+ +PD
Sbjct: 409 RGKWQKSFQVLREM--RNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDA 466
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+N +I+ C+ G+ NKA L E M+ G C P TY I+I+S+
Sbjct: 467 VTWNTLIDCHCKSGHHNKAEELFEAMQESG--CSPCTTTYNIMINSF 511
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R +G + + LI GE+ EA + MK+ +PDV Y ++ AL RV F
Sbjct: 598 RADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKF 657
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
+K + E+M L G C PD +L S+
Sbjct: 658 DKVPAVYEEMTLSG--CTPDRKARAMLRSA 685
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 152 WDFLKEM--SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
W+ +K + + G L T T L+ + G+ G +A+ MK +P YN
Sbjct: 517 WEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNA 576
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+INA + G +A M G + P V LI+++
Sbjct: 577 LINAYAQRGLSEQAINAFRVMRADGLK--PSVLVLNSLINAF 616
>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL-EQMELP 233
LI+ L G +++A F M F C PD+ +YN +IN CRV +K LL E M +
Sbjct: 220 LIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIK 279
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G PDV TYT +IS YCK G
Sbjct: 280 GV--SPDVITYTSIISGYCKLG 299
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 6/145 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKE-MSRRGNGELVTTS 170
I+KA EF+ + F F + V+ + F R N + D LKE M +G V T
Sbjct: 230 IDKAFEFFQNMGNF-GCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVIT- 287
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I + G + A F M +P+ + +NV+I+ +VGN A + E+M
Sbjct: 288 -YTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKM 346
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L G C PDV T+T LI YC+ G
Sbjct: 347 LLLG--CLPDVVTFTSLIDGYCREG 369
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+AR + +FL E+ G V+ L+ +L ++ LV+EA+ F +
Sbjct: 154 YARMGKLDSAKNFLNEV--HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFV 211
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDVY++N++I LCR+G +KA + M F C PD+ +Y LI+ +C+
Sbjct: 212 PDVYSFNILIRGLCRIGEIDKAFEFFQNM--GNFGCFPDIVSYNTLINGFCR 261
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI G+ G + A+ + +M C PDV + +I+ CR G N+ L E+M
Sbjct: 322 TFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEM 381
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
++ P+VYTY +LI++ CK
Sbjct: 382 KVRNL--SPNVYTYAVLINALCK 402
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
LW+ EM R V T V LI L +E + EA +K P + YN V
Sbjct: 377 LWE---EMKVRNLSPNVYTYAV--LINALCKENRIREARNFLRHLKSSEVVPKPFIYNPV 431
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I+ C+ G ++A F++ +M+ +C PD T+TILI C G
Sbjct: 432 IDGFCKAGKVDEANFIVAEMQEK--KCRPDKITFTILIIGNCMKG 474
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T T LI EG VN+ L + MK P+VY Y V+INALC+ +A
Sbjct: 350 GCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREA 409
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R L L P + Y +I +CK G
Sbjct: 410 RNFLRH--LKSSEVVPKPFIYNPVIDGFCKAG 439
>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
+K + EM+ G + T T T L+ VL ++G+V+EA F M + P++Y Y
Sbjct: 172 IKEAVELFNEMA--GRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTY 229
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N ++N C N A + E M G C P V++Y+ILI+ YCK
Sbjct: 230 NALMNGYCLRLEMNDASKVFEIMVGKG--CAPSVHSYSILINGYCK 273
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L EG + EA+ F M P+ + ++++ LC+ G ++AR + E M
Sbjct: 158 TFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETM 217
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
G P++YTY L++ YC
Sbjct: 218 TEKGVE--PNIYTYNALMNGYC 237
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G L T + L+ L + G + EAL M++ + PD+ YN++I + G
Sbjct: 325 SGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEV 384
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
A+ L ++ G R P V TY I+I K G+
Sbjct: 385 AKELFSKLFANGIR--PSVRTYNIMIKGLLKEGL 416
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+ LI L ++ A++ +M + +PD + +IN LC G +A L +M
Sbjct: 123 TLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEM 182
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
G P+ T+TIL+ CK GM
Sbjct: 183 --AGRDAMPNTVTFTILVDVLCKKGM 206
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G + + + LI + ++EA A +M + P+ YN ++ LC +
Sbjct: 254 GKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLL 313
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A+ L ++M G P++ TY+IL+ CK+G
Sbjct: 314 EAQELFKKMCSSGML--PNLRTYSILLDGLCKHG 345
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRR--GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
+ +G + G + KE+ + NG + T +IK L +EGL +EA F +M+
Sbjct: 371 ILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDD 430
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
PD +YNV+I + + + A L+++M G R D T+ +L+
Sbjct: 431 GFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEM--VGRRFSADSSTFKMLLD 479
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 37/106 (34%)
Query: 185 VNEALATFYRMKQFRCRPDV-----------------------------------YAYNV 209
+++A+A+FYRM RP Y N+
Sbjct: 67 IDDAMASFYRMIHMNPRPSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNI 126
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+IN+LCR+ + + A +L +M G + PD T+T LI+ C G
Sbjct: 127 LINSLCRLSHIHFAVSVLSKMFKLGIQ--PDSVTFTTLINGLCNEG 170
>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
Length = 637
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
+ L+D +K NG + T +I G GLV++A F M+ C+PDV Y
Sbjct: 447 ISNLFDKMKT-----NGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTY 501
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N +IN L + G+ ++A L ++M+ G+ PDV+TY+ILI + K
Sbjct: 502 NSLINCLGKHGDLDEAHMLFKEMQEKGY--DPDVFTYSILIECFGK 545
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F +MK PDV+ YN++I++ RVG +KA L E ME C PDV TY LI+
Sbjct: 451 FDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASS--CKPDVVTYNSLINCL 508
Query: 252 CKYG 255
K+G
Sbjct: 509 GKHG 512
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T C+++ V++ + M++ + D++AYN++++AL + G ++A + E M
Sbjct: 188 TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDM 247
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ C PD YTYTILI K G
Sbjct: 248 KQK--HCVPDAYTYTILIRMSGKAG 270
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
KEM +G V T ++ LI+ G+ V A + F M C P++ YN++++
Sbjct: 520 LFKEMQEKGYDPDVFTYSI--LIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDC 577
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
L R G +A L E M+ G PD TY+IL
Sbjct: 578 LERRGKTEEAHKLYETMKQQGL--IPDSITYSIL 609
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI LG+ G ++EA F M++ PDV+ Y+++I + A L ++M
Sbjct: 500 TYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEM 559
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P++ TY IL+ + G
Sbjct: 560 ISEG--CTPNIVTYNILLDCLERRG 582
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R V + +EM R+G + L+ L + G+V++A F MKQ C PD
Sbjct: 198 RSREVSKGFQVYEEMRRKGYK--LDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPD 255
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
Y Y ++I + G +K ++M G C ++ + +I + K M
Sbjct: 256 AYTYTILIRMSGKAGRTSKFLSFFDEMVSKG--CVLNLIAFNTIIEALGKNKM 306
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++VL EA+ + M + DV YN+V +AL ++ + L ++M+ G
Sbjct: 399 MLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNG 458
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
PDV+TY I+ISSY + G+
Sbjct: 459 I--IPDVFTYNIMISSYGRVGL 478
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI++ G+ G ++ L+ F M C ++ A+N +I AL + +K F+L +M
Sbjct: 258 TYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKM 317
Query: 231 ELPGFRCPPDVYTYTILIS 249
C P+ +TY+I +
Sbjct: 318 VEND--CQPNQFTYSITLD 334
>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 520
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 6/107 (5%)
Query: 151 LWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
+ D KEM RG LVT ++ L+ L + +++A+A F +MK+ +P+ Y Y
Sbjct: 344 ILDLTKEMHHRGQPANLVTYNS---LLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTA 400
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+I+ LC+ G K + L + + + G+ C DV+TYT++IS CK GM
Sbjct: 401 LIDGLCKGGRLKKGQALFQHLLVKGY-C-IDVWTYTVMISGLCKEGM 445
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 152 WDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+D EM+ RG +++T +T+ C + G+ + EA M P++Y YN +
Sbjct: 170 YDLYSEMNARGIFPDVITYTTLICGFCLAGQ---LMEAFGLLNEMILKNINPNIYTYNTL 226
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I+ LC+ G +++ LL M G + PDV Y+IL+ YC G
Sbjct: 227 IDTLCKEGKVKESKNLLAVMTKKGVK--PDVVIYSILMDGYCLVG 269
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT----CLIKVLGEEGLVNEALATFYRMKQ 197
+ VK + L M+++G V ++ CL+ G V +A F M Q
Sbjct: 230 LCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLV------GEVQKAKQIFLVMVQ 283
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDVY+YN++IN LC+ ++A LL +M PD TY+ LI CK G
Sbjct: 284 TGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNM--IPDTVTYSSLIDGLCKLG 339
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L +EG V E+ M + +PDV Y+++++ C VG KA+ + M
Sbjct: 222 TYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVM 281
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G PDVY+Y I+I+ CK
Sbjct: 282 VQTGVN--PDVYSYNIIINGLCK 302
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+G V + L+EM + + T T + LI L + G + L M
Sbjct: 300 LCKGKRVDEAMNLLREMLHKN--MIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQP 357
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ YN +++ LC+ N +KA L +M+ G + P+ YTYT LI CK G
Sbjct: 358 ANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQ--PNKYTYTALIDGLCKGG 409
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RPDV Y+ +I+ LC+ ++A L +M G PDV TYT LI +C G
Sbjct: 147 RPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIF--PDVITYTTLICGFCLAG 199
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T +I L +EG+ +EALA +M+ C P+ + ++I +L +KA
Sbjct: 425 GYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKA 484
Query: 224 RFLLEQMELPGF 235
LL +M G
Sbjct: 485 EKLLHEMIAKGL 496
>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g22470, mitochondrial-like [Glycine max]
Length = 468
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + + + EM RG V T T L+ L + +++A A F +MK+ +
Sbjct: 298 LCKSGRITSALNLMNEMHHRGQPADVVT--YTSLLDALCKNQNLDKATALFMKMKERGIQ 355
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P +Y Y +I+ LC+ G A+ L + + + G C DV+TYT++IS CK GM
Sbjct: 356 PTMYTYTALIDGLCKGGRLKNAQELFQHLLVKG--CCIDVWTYTVMISGLCKEGM 408
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 7/144 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+N+A + Y ++ F N +T + F + G + L EM + V T +
Sbjct: 166 VNEAYDLYSEMDAR-EIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFS 224
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ LI L +EG A F+ M Q P+VY+YN++IN LC+ ++A LL +M
Sbjct: 225 I--LIDALCKEG--KNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREML 280
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
PD TY LI CK G
Sbjct: 281 HKNM--VPDTVTYNSLIDGLCKSG 302
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ +I L ++ LVNEA + M P+V YN +I A C G A LL +M L
Sbjct: 154 SAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMIL 213
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
PDVYT++ILI + CK G
Sbjct: 214 KNIN--PDVYTFSILIDALCKEG 234
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI L + G + AL M DV Y +++ALC+ N +KA L
Sbjct: 288 TVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFM 347
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M+ G + P +YTYT LI CK G
Sbjct: 348 KMKERGIQ--PTMYTYTALIDGLCKGG 372
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 12/163 (7%)
Query: 88 DNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN 147
D + N L+ G ++T +N E +H + + VT + + N
Sbjct: 287 DTVTYNSLIDGLC---KSGRITSALNLMNEMHHRGQP-----ADVVTYTSLLDALCKNQN 338
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
+ +M RG T T T LI L + G + A F + C DV+ Y
Sbjct: 339 LDKATALFMKMKERGIQP--TMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTY 396
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
V+I+ LC+ G F++A + +ME G C P+ T+ I+I S
Sbjct: 397 TVMISGLCKEGMFDEALAIKSKMEDNG--CIPNAVTFEIIIRS 437
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+EA+ M PD YN +I+ LC+ G A L+ +M G P DV TY
Sbjct: 269 VDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQ--PADVVTY 326
Query: 245 TILISSYCK 253
T L+ + CK
Sbjct: 327 TSLLDALCK 335
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+G +K + + + +G + T T +I L +EG+ +EALA +M+ C
Sbjct: 368 LCKGGRLKNAQELFQHLLVKGC--CIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCI 425
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQM---ELPGFR 236
P+ + ++I +L +KA LL +M L GFR
Sbjct: 426 PNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLGFR 463
>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
Length = 579
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ NG + T +I G GLV++A F M+ C+PDV YN +IN L + G+
Sbjct: 397 KTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDL 456
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++A L ++M+ G+ PDV+TY+ILI + K
Sbjct: 457 DEAHMLFKEMQEKGY--DPDVFTYSILIECFGK 487
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F +MK PDV+ YN++I++ RVG +KA L E ME C PDV TY LI+
Sbjct: 393 FDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASS--CKPDVVTYNSLINCL 450
Query: 252 CKYG 255
K+G
Sbjct: 451 GKHG 454
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T C+++ V++ + M++ + D++AYN++++AL + G ++A + E M
Sbjct: 130 TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDM 189
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ C PD YTYTILI K G
Sbjct: 190 KQK--HCVPDAYTYTILIRMSGKAG 212
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
KEM +G V T ++ LI+ G+ V A + F M C P++ YN++++
Sbjct: 462 LFKEMQEKGYDPDVFTYSI--LIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDC 519
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
L R G +A L E M+ G PD TY+IL
Sbjct: 520 LERRGKTEEAHKLYETMKQQGL--IPDSITYSIL 551
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI LG+ G ++EA F M++ PDV+ Y+++I + A L ++M
Sbjct: 442 TYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEM 501
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P++ TY IL+ + G
Sbjct: 502 ISEG--CTPNIVTYNILLDCLERRG 524
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R V + +EM R+G + L+ L + G+V++A F MKQ C PD
Sbjct: 140 RSREVSKGFQVYEEMRRKGYK--LDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPD 197
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
Y Y ++I + G +K ++M G C ++ + +I + K M
Sbjct: 198 AYTYTILIRMSGKAGRTSKFLSFFDEMVSKG--CVLNLIAFNTIIEALGKNKM 248
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
EA+ + M + DV YN+V +AL ++ + L ++M+ G PDV+TY I
Sbjct: 353 EAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGI--IPDVFTYNI 410
Query: 247 LISSYCKYGM 256
+ISSY + G+
Sbjct: 411 MISSYGRVGL 420
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI++ G+ G ++ L+ F M C ++ A+N +I AL + +K F+L +M
Sbjct: 200 TYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKM 259
Query: 231 ELPGFRCPPDVYTYTILIS 249
C P+ +TY+I +
Sbjct: 260 --VENDCQPNQFTYSITLD 276
>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
Length = 1023
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193
+C + FAR G+ F K+M G G T T +I + +EG + A F
Sbjct: 100 SCNGLLHKFARLGKTDGMKRFFKDMI--GAGSKPTVFTYNIMIDCMCKEGDIEAASGLFE 157
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
MK PD YN +I+ +VG + + E+M+ C PDV TY LI+ +CK
Sbjct: 158 EMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMK--SMSCEPDVITYNTLINCFCK 215
Query: 254 YG 255
+G
Sbjct: 216 FG 217
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+ CKE I A G +EM RG + T T +I G+ G +++ +
Sbjct: 141 DCMCKEGDIEAASG--------LFEEMKFRG--LIPDTVTYNSMIDGYGKVGRLDDTVYF 190
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F MK C PDV YN +IN C+ G K +M+ G + P+V +Y+ L+ ++
Sbjct: 191 FEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLK--PNVVSYSTLVDAF 248
Query: 252 CKYGM 256
CK M
Sbjct: 249 CKEDM 253
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 7/105 (6%)
Query: 149 KGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
KGL +F +EM + G +V+ ST L+ +E ++ +AL + M++ P+ + Y
Sbjct: 221 KGL-EFFREMKQSGLKPNVVSYST---LVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTY 276
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+++A C++GN + A L ++M G +V TYT LI C
Sbjct: 277 TSLVDAYCKIGNLSDAFRLADEMSQVGVEW--NVVTYTALIDGLC 319
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 37/116 (31%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFR----------------------------------- 199
L VL EE + EAL F +MK+ R
Sbjct: 69 LFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAG 128
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P V+ YN++I+ +C+ G+ A L E+M+ G PD TY +I Y K G
Sbjct: 129 SKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGL--IPDTVTYNSMIDGYGKVG 182
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMK-QFRCRPDVYAYNVVINALCRVGNFNKARF 225
VT T LI L + LV++A+ F R+ F + + Y +I+ LC+ A
Sbjct: 446 VTAVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATT 505
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L EQM G PD YT LI K G
Sbjct: 506 LFEQMAQKGL--VPDRTAYTSLIDGKLKQG 533
>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
Length = 579
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ NG + T +I G GLV++A F M+ C+PDV YN +IN L + G+
Sbjct: 397 KTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDL 456
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++A L ++M+ G+ PDV+TY+ILI + K
Sbjct: 457 DEAHMLFKEMQEKGY--DPDVFTYSILIECFGK 487
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F +MK PDV+ YN++I++ RVG +KA L E ME C PDV TY LI+
Sbjct: 393 FDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASS--CKPDVVTYNSLINCL 450
Query: 252 CKYG 255
K+G
Sbjct: 451 GKHG 454
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T C+++ V++ + M++ + D++AYN++++AL + G ++A + E M
Sbjct: 130 TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDM 189
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ C PD YTYTILI K G
Sbjct: 190 KQK--HCVPDAYTYTILIRMSGKAG 212
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
KEM +G V T ++ LI+ G+ V A + F M C P++ YN++++
Sbjct: 462 LFKEMQEKGYDPDVFTYSI--LIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDC 519
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
L R G +A L E M+ G PD TY+IL
Sbjct: 520 LERRGKTEEAHKLYETMKQQGL--IPDSITYSIL 551
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI LG+ G ++EA F M++ PDV+ Y+++I + A L ++M
Sbjct: 442 TYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEM 501
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P++ TY IL+ + G
Sbjct: 502 ISEG--CTPNIVTYNILLDCLERRG 524
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R V + +EM R+G + L+ L + G+V++A F MKQ C PD
Sbjct: 140 RSREVSKGFQVYEEMRRKGYK--LDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPD 197
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
Y Y ++I + G +K ++M G C ++ + +I + K M
Sbjct: 198 AYTYTILIRMSGKAGRTSKFLSFFDEMVSKG--CVLNLIAFNTIIEALGKNKM 248
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
EA+ + M + DV YN+V +AL ++ + L ++M+ G PDV+TY I
Sbjct: 353 EAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGI--IPDVFTYNI 410
Query: 247 LISSYCKYGM 256
+ISSY + G+
Sbjct: 411 MISSYGRVGL 420
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI++ G+ G ++ L+ F M C ++ A+N +I AL + +K F+L +M
Sbjct: 200 TYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKM 259
Query: 231 ELPGFRCPPDVYTYTILIS 249
C P+ +TY+I +
Sbjct: 260 VEND--CQPNQFTYSITLD 276
>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
Length = 529
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
NEVT + F + NV G EM R+G V T + LI L +G V+EA+A
Sbjct: 227 NEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNI--LINGLCSDGKVDEAVA 284
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+M P+V +NV+IN C+ N+A L ME G P+ TYT LI +
Sbjct: 285 LRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGV--DPNAMTYTTLIDA 342
Query: 251 YCKYG 255
YCK G
Sbjct: 343 YCKDG 347
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V + +M ++G T T LI ++G + +A A + M
Sbjct: 308 FCKNKTVNEAINLFNDMEKQGVDP--NAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIF 365
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V YN +I LCR G+ AR L+ +M + DV TY ILI S CK G
Sbjct: 366 PEVSTYNCLIAGLCRKGDVKAARSLMNEM--VSKKLSADVVTYNILIDSLCKKG 417
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 8/130 (6%)
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLV 185
F N + + + F R N+K L F E +R S ++C L+ L +E
Sbjct: 81 FCVNSILADMLVLAFVR--NLKILRGF--EAFKRAGDYGFKLSLISCNPLLSGLVKESEN 136
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+ + M + + +V ++N+V+N LC+VG N+A ++E M++ G P+V TY
Sbjct: 137 GDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGV--SPNVITYN 194
Query: 246 ILISSYCKYG 255
LI YCK G
Sbjct: 195 TLIDGYCKMG 204
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
ST CLI L +G V A + M + DV YN++I++LC+ G KA LL+
Sbjct: 368 VSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLD 427
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M G P TY L+ YC+ G
Sbjct: 428 EMFEKGLN--PSHVTYNTLMDGYCREG 452
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALC---RVGNFNKARFLLEQMELPGFRCPP 239
G +N A MK + P+V YN +I+ C R+G KA +L++M G CP
Sbjct: 169 GKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGI-CPN 227
Query: 240 DVYTYTILISSYCK 253
+V TY ILI +CK
Sbjct: 228 EV-TYNILIDGFCK 240
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R +VK + EM S++ + ++VT + LI L ++G +A+ M +
Sbjct: 378 LCRKGDVKAARSLMNEMVSKKLSADVVTYNI---LIDSLCKKGESRKAVKLLDEMFEKGL 434
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P YN +++ CR GN A + +ME G + +V T+ +LI +C G
Sbjct: 435 NPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQ--ANVVTHNVLIKGFCLKG 487
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
+G G + +A A M P+ YN++I+ C+ N + A + +M+ G R
Sbjct: 203 MGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLR-- 260
Query: 239 PDVYTYTILISSYCKYG 255
P+V TY ILI+ C G
Sbjct: 261 PNVVTYNILINGLCSDG 277
>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 447
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 69/126 (54%), Gaps = 7/126 (5%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALA 190
+ CKE G V + +WD + EM RG +++T S+ LI L + G ++ A+A
Sbjct: 276 DALCKE-GKVKEAKRRISYVWDLIDEMRDRGQPADVITYSS---LIDGLCKNGHLDRAIA 331
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F +MK RP+++ + ++++ L + G A+ + + + G+ +VYTY ++I+
Sbjct: 332 LFNKMKDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQDLLTKGYHL--NVYTYNVMING 389
Query: 251 YCKYGM 256
+CK G+
Sbjct: 390 HCKQGL 395
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
++ ++ +G L V + +I L + LV+EA F M DV YN +I
Sbjct: 184 KLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGF 243
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C VG +A LL M L PDVYTYTIL+ + CK G
Sbjct: 244 CIVGKLKEAIGLLNVMVLKTIN--PDVYTYTILVDALCKEG 282
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 13/112 (11%)
Query: 152 WDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+ EM+ +G + ++VT +T+ ++G+ + EA+ M PDVY Y ++
Sbjct: 218 YGLFSEMTVKGISADVVTYNTLIYGFCIVGK---LKEAIGLLNVMVLKTINPDVYTYTIL 274
Query: 211 INALCRVGNFNKAR-------FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ALC+ G +A+ L+++M G P DV TY+ LI CK G
Sbjct: 275 VDALCKEGKVKEAKRRISYVWDLIDEMRDRG--QPADVITYSSLIDGLCKNG 324
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T T+ LIK L +G V +AL ++ + + Y +IN +C++G+ A LL
Sbjct: 127 STVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVGYGTLINGVCKIGDTRAAIKLL 186
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKY 254
++++ G PDV Y+ +I + CKY
Sbjct: 187 KKID--GRLTKPDVVMYSTIIDALCKY 211
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++A++ F RM R P + +N ++++ ++ +++ L ++EL G + PD++T
Sbjct: 40 VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTVS-LSHRLELKGIQ--PDLFTL 96
Query: 245 TILISSYCKYGMQT 258
ILI+ +C G T
Sbjct: 97 NILINCFCHMGQIT 110
>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 529
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + + + EM RG V T T L+ L + +++A A F +MK+ +
Sbjct: 335 LCKSGRITSALNLMNEMHHRGQPADVVT--YTSLLDALCKNQNLDKATALFMKMKERGIQ 392
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P +Y Y +I+ LC+ G A+ L + + + G C DV+TYT++IS CK GM
Sbjct: 393 PTMYTYTALIDGLCKGGRLKNAQELFQHLLVKG--CCIDVWTYTVMISGLCKEGM 445
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVT---CLIKVLGEEGLVNEALATFYRMKQ 197
+ NVK + L M++ G +VT ST+ CL+ G V A F+ M Q
Sbjct: 230 LCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLV------GEVQNAKQIFHAMVQ 283
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+VY+YN++IN LC+ ++A LL +M PD TY LI CK G
Sbjct: 284 MGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNM--VPDTVTYNSLIDGLCKSG 339
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 152 WDFLKEMSRRGN-GELVTTSTVT---CLI-KVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
+D EM RG + +T +T+ CL+ +++G L++E + P VY
Sbjct: 170 YDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILK-------NINPGVYI 222
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN++INALC+ GN +A+ LL M G + P V TY+ L+ YC G
Sbjct: 223 YNILINALCKEGNVKEAKNLLAVMTKEGIK--PGVVTYSTLMDGYCLVG 269
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI L + G + AL M DV Y +++ALC+ N +KA L
Sbjct: 325 TVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFM 384
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M+ G + P +YTYT LI CK G
Sbjct: 385 KMKERGIQ--PTMYTYTALIDGLCKGG 409
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L ++ LVNEA + M PD Y +I C +G A LL++M L
Sbjct: 156 IIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKN 215
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P VY Y ILI++ CK G
Sbjct: 216 IN--PGVYIYNILINALCKEG 234
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+EA+ M PD YN +I+ LC+ G A L+ +M G P DV TY
Sbjct: 306 VDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQ--PADVVTY 363
Query: 245 TILISSYCK 253
T L+ + CK
Sbjct: 364 TSLLDALCK 372
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 12/163 (7%)
Query: 88 DNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN 147
D + N L+ G ++T +N E +H + + VT + + N
Sbjct: 324 DTVTYNSLIDGLC---KSGRITSALNLMNEMHHRGQP-----ADVVTYTSLLDALCKNQN 375
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
+ +M RG T T T LI L + G + A F + C DV+ Y
Sbjct: 376 LDKATALFMKMKERGIQP--TMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTY 433
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
V+I+ LC+ G F++A + +ME G C P+ T+ I+I S
Sbjct: 434 TVMISGLCKEGMFDEALAIKSKMEDNG--CIPNAVTFEIIIRS 474
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 5/142 (3%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+N+A + Y ++ F + +T + F + G + L EM + V
Sbjct: 166 VNEAYDLYSEMDAR-GIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYN 224
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ LI L +EG V EA M + +P V Y+ +++ C VG A+ + M
Sbjct: 225 I--LINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMV 282
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
G P+VY+Y I+I+ CK
Sbjct: 283 QMGVN--PNVYSYNIMINGLCK 302
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+G +K + + + +G + T T +I L +EG+ +EALA +M+ C
Sbjct: 405 LCKGGRLKNAQELFQHLLVKGC--CIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCI 462
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
P+ + ++I +L +KA LL +M G
Sbjct: 463 PNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 496
>gi|413938248|gb|AFW72799.1| hypothetical protein ZEAMMB73_717335 [Zea mays]
Length = 501
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQF 198
F R ++ WDF +M RRG N E V T ++ LG G +++A F M
Sbjct: 254 FFRSGQLQHAWDFFLQMKRRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSIE 313
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+P YN +I C+ GN A + + M G+ P+V TYT+LI C G
Sbjct: 314 GCKPSTATYNALIQVTCKKGNLEDAVAVFDDMVRKGY--IPNVVTYTVLIRGLCHAG 368
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+VTCK+ N++ +M R+G V T TV LI+ L G V A+
Sbjct: 327 QVTCKK--------GNLEDAVAVFDDMVRKGYIPNVVTYTV--LIRGLCHAGKVVRAMKL 376
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
RMK C P+V YNV+I G K L E M G C P+ TY I+IS+
Sbjct: 377 LDRMKSEGCEPNVQTYNVLIRYSLEEGEIEKGLDLFETMS-KGEECLPNQDTYNIIISA 434
>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
Length = 577
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + V ++ L EM RG +++ ST LI+ L +G ++EAL F M + C
Sbjct: 9 FCKAGQVDQAFELLDEMKERGVKMDVLLHST---LIQGLCRKGRIDEALEQFKSMGE-EC 64
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMEL---PGFRCPPDVYTYTILISSYCK 253
P+V YN V+N LC+ ++ L + ME C PDV +Y+ +I + CK
Sbjct: 65 SPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCK 120
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R + L M +G G + ++ L + +A F R+ + +
Sbjct: 188 FKRQGKPSECLELLLHMKEKGFG--INIIDFNAMLHALWKNDEQEKACQFFERLLKSGKK 245
Query: 202 PDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V YNV ++ LC+ G ++A R LLE +E + PDV TY+ +I +CK G
Sbjct: 246 PNVVTYNVAVHGLCKAGKVDEAYRILLEMVE---SKVTPDVITYSSIIDGFCKAG 297
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I + G V++A MK+ + DV ++ +I LCR G ++A LEQ +
Sbjct: 3 TTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEA---LEQFKS 59
Query: 233 PGFRCPPDVYTYTILISSYCK 253
G C P+V TY +++ CK
Sbjct: 60 MGEECSPNVITYNTVVNGLCK 80
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNG------ELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
+ N + + +M +R ++++ STV I L + V++A F RM
Sbjct: 78 LCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTV---IDALCKAQRVDKAYEYFKRM 134
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ C P+V Y+ +I+ LC+V ++A LL M+L G P Y +++ + + G
Sbjct: 135 RAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLL--MQLKGEDMVPRAMYYNAVVNGFKRQG 192
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
GE+ +V + + + G +EA+ +M RPD Y V+ +LC + +
Sbjct: 436 QGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDS 495
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
A E+M G C P + TYT+LI C M
Sbjct: 496 AIAEFEKMASRG--CAPGLVTYTLLIGEACSADM 527
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
F + + + G V T V + L + G V+EA M + + PDV Y+ +I+
Sbjct: 235 FFERLLKSGKKPNVVTYNVA--VHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDG 292
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
C+ G +KA + +M + C P T+ L+ + ++
Sbjct: 293 FCKAGRMDKADDVFTRMMV--HECIPHPVTFMTLLHGFSEH 331
>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 784
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G V T+T LI E ++EA+ +MK F C PD +YN +++ LC+ G N+A
Sbjct: 207 GVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEA 266
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R LL M+ G P+ T+ IL+S YCK G
Sbjct: 267 RDLLLDMKNNGLL--PNRNTFNILVSGYCKLG 296
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 12/157 (7%)
Query: 93 NVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLW 152
N+L+ G + I K +F + + + +V CK+ + AR
Sbjct: 216 NILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEAR-------- 267
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D L +M + NG L +T L+ + G + EA M Q PDV+ YN++I
Sbjct: 268 DLLLDM--KNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIG 325
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
LC+ G ++A L ++ME + PDV TY LI+
Sbjct: 326 GLCKDGKIDEAFRLKDEME--NLKLLPDVVTYNTLIN 360
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L++ L EG++++AL F D YN +I+ LC+ F +A LL +M
Sbjct: 599 TCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEM 658
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E + PD YTY ++S+ G
Sbjct: 659 EEK--KLGPDCYTYNAILSALADAG 681
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 142 FARGNNVKG--LWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
F G +V+ LWD +KE E++ + T +I L G ++++ + +
Sbjct: 503 FKDGKSVEAMKLWDEMKE------KEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLES 556
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD YN +I CR G KA +M F+ PD++T IL+ C GM
Sbjct: 557 GLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFK--PDLFTCNILLRGLCTEGM 612
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L ++G ++EA M+ + PDV YN +IN + K L+++M
Sbjct: 319 TYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKM 378
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G + P+ TY +++ Y K G
Sbjct: 379 EGKGVK--PNAVTYNVVVKWYVKEG 401
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M+ +P+ YNVV+ + G + A L +ME GF PD T+ LI+ YCK
Sbjct: 377 KMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGF--SPDCVTFNTLINGYCK 434
Query: 254 YG 255
G
Sbjct: 435 AG 436
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ L S+RG V + LI ++G EA+ + MK+ P + YN +I
Sbjct: 477 YKLLSSASKRG--YFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMI 534
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC G +++ L ++ G PD TY +I YC+ G
Sbjct: 535 GGLCHSGKTDQSIDKLNELLESGL--VPDETTYNTIILGYCREG 576
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F +++KG ++ + +M G G T ++K +EG ++ A +M++
Sbjct: 363 FDCSSSLKG-FELIDKM--EGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFS 419
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
PD +N +IN C+ G ++A ++++M G +
Sbjct: 420 PDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLK 454
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 122 VERFFHFFHNEVTCKEMG------IVFARGNNVKGLWDFLKEM--SRRGNGELVTTSTVT 173
VE+ F F HN++ K + RG +G+ D ++ + G+ + T
Sbjct: 578 VEKAFQF-HNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYN 636
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+I L +E EA M++ + PD Y YN +++AL G +A + ++
Sbjct: 637 TIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRI 693
>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 530
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
++ F++W F + EM + + + W + M RG +T ST +
Sbjct: 125 QSLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRG--VRITVSTFS 182
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L++ GL EA+ F RM+ + C+PD ++++VI++LC+ ++A + ++
Sbjct: 183 VLVRRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLK-- 240
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
+ PDV YT L+ +C+ G
Sbjct: 241 -HKFEPDVIVYTSLVHGWCRAG 261
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ G + +A F MK+ +P+VY Y++VI++LCR G +A + +M
Sbjct: 251 TSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMID 310
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C P+ T+ L+ + K G
Sbjct: 311 AG--CDPNAVTFNSLMRVHVKAG 331
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ N+ L M ++G ST + + E VN A + +MK+ +C P+
Sbjct: 364 KDENLDEAVKVLDTMVKKGVAP--NASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPN 421
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN+++ + + L ++M+ P+V TY ILI +C+ G
Sbjct: 422 TLTYNILMRMFADSKSIDMVLKLKKEMD--ESEVEPNVNTYRILILMFCEKG 471
>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
Length = 1315
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 129 FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188
+ + T K + + + R NV ++ EM RG +V +T+T +I E+ LVN A
Sbjct: 828 YPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGF--VVDNATLTLIITAFCEKSLVNRA 885
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+ F+++ + P++ Y+ +I+ LC+ G+ +A LLE+M G++ P+VYT+T LI
Sbjct: 886 VWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWK--PNVYTHTSLI 943
Query: 249 SSYCKYG 255
CK G
Sbjct: 944 HGLCKKG 950
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 6/145 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+N+A F+H V + N + M + +VK ++ L+EM + NG T
Sbjct: 882 VNRAVWFFHKVTKM-GLSPNLINYSSMISGLCKRGSVKQAFELLEEMVK--NGWKPNVYT 938
Query: 172 VTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L ++G A F ++ + +P+V+ Y +I+ C+ ++A L E+M
Sbjct: 939 HTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERM 998
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G P+ TYT LI +CK G
Sbjct: 999 KEQGL--VPNTNTYTTLIDGHCKAG 1021
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I +E ++ A F RMK+ P+ Y +I+ C+ GNF+KA L+E M
Sbjct: 974 TYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELM 1033
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF P+ TY ++ CK G
Sbjct: 1034 SNEGFF--PNTCTYNSIVDGLCKRG 1056
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ N ++ ++ MS G T T ++ L + G EA Q + D
Sbjct: 1019 KAGNFSKAYELMELMSNEGF--FPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEAD 1076
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
Y ++I+ C+ + N+A L +M GF+ PD++ YT LI+++C+ M
Sbjct: 1077 GVTYTILISEQCKRADMNQALVFLNKMFKVGFQ--PDIHLYTTLIAAFCRQNM 1127
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189
H V C M VFA +K D + +M R G ++TT + +I V E LV A
Sbjct: 761 HEVVEC--MVGVFAEIGKLKEAVDMILDM--RNQGLVLTTRVMNRIILVAAEMRLVEYAG 816
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILI 248
F M PD Y +I CR GN +A R++ E ME GF D T T++I
Sbjct: 817 NVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMME-RGFVV--DNATLTLII 873
Query: 249 SSYCKYGM 256
+++C+ +
Sbjct: 874 TAFCEKSL 881
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F R N +K E+ + G T T T +I E V+ A+ F +M C
Sbjct: 1121 AFCRQNMMKDSEKLFDEVIKLGLAP--TKETYTSMICGYCREKKVSLAVKFFQKMSDHGC 1178
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD +Y +I+ LC+ ++AR L + M G P T L YCK
Sbjct: 1179 APDSISYGALISGLCKESRLDEARQLYDTMIDKGL--SPCEVTRVTLTYEYCK 1229
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + +N+AL +M + +PD++ Y +I A CR + L +++
Sbjct: 1079 TYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEV 1138
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G P TYT +I YC+
Sbjct: 1139 IKLGL--APTKETYTSMICGYCR 1159
Score = 36.6 bits (83), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ G + T+T T LI + G ++A M P+ YN +++ LC+ G
Sbjct: 999 KEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRA 1058
Query: 221 NKARFLLEQMELPGF--RCPPDVYTYTILISSYCK 253
+A LL GF + D TYTILIS CK
Sbjct: 1059 EEAFKLLNT----GFQNQIEADGVTYTILISEQCK 1089
>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
Length = 616
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L ++G ++A+ F M+ R +P++ YN VI+ LC+ GN KAR LLE+M G
Sbjct: 103 LIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKG 162
Query: 235 FRCPPDVYTYTILISSY 251
+ PD+ TY LI+++
Sbjct: 163 GKSAPDIVTYNTLINAF 179
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLG--EEGLVNEALATFYRMKQFR 199
F R + ++ F ++M G + +TC I V G ++G V EAL MK
Sbjct: 179 FYRASRIREACAFREKMKAAG----INPDVLTCNILVSGICKDGDVEEALEILDGMKLAG 234
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PDV YN +I+ALC G +A +L+ M C PD+ T+ L+ +CK GM
Sbjct: 235 PVPDVITYNSIIHALCVAGKVVEAAEILKTMS-----CSPDLVTFNTLLDGFCKAGM 286
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ LK MS + +LVT +T L+ + G++ AL M + PDV Y +++N
Sbjct: 260 EILKTMS--CSPDLVTFNT---LLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVN 314
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LCRVG A +LLE++ G+ PDV YT L+ CK G
Sbjct: 315 GLCRVGQVQVAFYLLEEIVRQGY--IPDVIAYTSLVDGLCKSG 355
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ N++ + L+EM R+G T LI + EA A +MK
Sbjct: 142 LCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGIN 201
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP-PDVYTYTILISSYCKYG 255
PDV N++++ +C+ G+ +A +L+ M+L G P PDV TY +I + C G
Sbjct: 202 PDVLTCNILVSGICKDGDVEEALEILDGMKLAG---PVPDVITYNSIIHALCVAG 253
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI+ + G AL + +F PDVY +NV+I+ L + GN ++A L E M
Sbjct: 64 TFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENM 123
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E R P++ TY +IS CK G
Sbjct: 124 E--SSRVKPEIVTYNTVISGLCKSG 146
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 154 FLKEMSRRG--NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+KEMS RG G ++ +S V+ + G V++A M P ++ YN+V+
Sbjct: 363 LVKEMSVRGCRTGVVMYSSLVSGYCRA----GNVHKAREILAEMVSINMVPPLFTYNIVL 418
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
L + G+ +KA L+ + G+ PDV TY LI CK
Sbjct: 419 GGLIKDGSISKAVSLISDLVARGY--VPDVVTYNTLIDGLCK 458
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+E+ R+G + T L+ L + G + EA M CR V Y+ +++
Sbjct: 328 LLEEIVRQGY--IPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSG 385
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CR GN +KAR +L +M P ++TY I++ K G
Sbjct: 386 YCRAGNVHKAREILAEM--VSINMVPPLFTYNIVLGGLIKDG 425
>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 794
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + +WD + EM RG +++T ++ LI L + G +++A+A F +MK
Sbjct: 632 LCKSGRISYVWDLIDEMRDRGQPADVITYNS---LIDGLCKNGHLDKAIALFNKMKDQGI 688
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
RP+ + + ++++ LC+ G A+ + + + G+ DVY Y ++I +CK G+
Sbjct: 689 RPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHL--DVYIYNVMIYGHCKQGL 742
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ LG+EG V EA + M + +PDV+ YN ++N V KA+ + M
Sbjct: 519 TYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAM 578
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
L G PDV+TYTILI+ +CK M
Sbjct: 579 SLMGV--TPDVHTYTILINGFCKSKM 602
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V + KEM ++ + T T + L+ L + G ++ M+
Sbjct: 597 FCKSKMVDEALNLFKEMHQKN--MVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQP 654
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
DV YN +I+ LC+ G+ +KA L +M+ G R P+ +T+TIL+ CK G
Sbjct: 655 ADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIR--PNTFTFTILLDGLCKGG 706
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + +V+EAL F M Q PD Y+ +++ LC+ G + L+++M
Sbjct: 589 TYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEM 648
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P DV TY LI CK G
Sbjct: 649 RDRGQ--PADVITYNSLIDGLCKNG 671
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELV--TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
++ R+ +G L + +I L + LV+EA F M DV Y+ +I
Sbjct: 433 KLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGF 492
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C VG +A LL +M L PDV TYTIL+ + K G
Sbjct: 493 CIVGKLKEAIGLLNEMVLKTIN--PDVRTYTILVDALGKEG 531
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
Query: 117 EFYHWVERFFH--FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRR---GNGELVTTST 171
E H+ ++ F N+V+ + R + + FL+++ R N E+ T
Sbjct: 81 EALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNT-- 138
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+I L + LV+EA F M +V Y+ +I C VG +A LL M
Sbjct: 139 ---IIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMV 195
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
L P+V TY IL+ + CK G
Sbjct: 196 LKTIN--PNVCTYNILVDALCKEG 217
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 12/104 (11%)
Query: 152 WDFLKEMSRRG-NGELVTTSTVT---CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
+ EM+ +G + ++VT ST+ C++ G + EA+ M PDV Y
Sbjct: 467 YGLFSEMTVKGISADVVTYSTLIYGFCIV------GKLKEAIGLLNEMVLKTINPDVRTY 520
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
++++AL + G +A+ +L M + PDV+TY L++ Y
Sbjct: 521 TILVDALGKEGKVKEAKSVLAVMLKACVK--PDVFTYNTLMNGY 562
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V +A F M PDV+ Y ++IN C+ ++A L ++M PD TY
Sbjct: 568 VKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNM--VPDTVTY 625
Query: 245 TILISSYCKYG 255
+ L+ CK G
Sbjct: 626 SSLVDGLCKSG 636
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T+ LIK L +G V EAL ++ + + +Y +IN +CR+G+ A L
Sbjct: 63 TVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKFLR 122
Query: 229 QMELPGFRCPPDVYTYTILISSYCKY 254
+++ G P+V Y +I + CKY
Sbjct: 123 KID--GRLAKPNVEMYNTIIDALCKY 146
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 36/108 (33%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-------------- 230
V +A F M PDV++YN++IN C++ +KA L ++M
Sbjct: 254 VKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKI 313
Query: 231 --------------------ELPGFRCPPDVYTYTILISSYCKYGMQT 258
EL G + PD++T ILI+ +C G T
Sbjct: 314 LDSFAKMKHYSTAVSLSHRLELKGIQ--PDLFTLNILINCFCHMGQIT 359
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
++GL+ EAL +M++ C P+ ++++INAL + +KA LL QM G
Sbjct: 739 KQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARGL 793
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T T+ LIK L +G V +AL ++ + + +Y +IN +C++G+ A LL
Sbjct: 376 STVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLL 435
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKY 254
+++ G P+V Y+ +I + CKY
Sbjct: 436 RKID--GRLTKPNVEMYSTIIDALCKY 460
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 152 WDFLKEMSRRG-NGELVTTSTVT---CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
+ EM+ +G + +VT ST+ C++ G + EAL M P+V Y
Sbjct: 153 YGLFSEMTVKGISANVVTYSTLIYGFCIV------GKLKEALGLLNVMVLKTINPNVCTY 206
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
N++++ALC+ G +A+ +L M + +V TY+ L+ Y
Sbjct: 207 NILVDALCKEGKVKEAKSVLAVMLKACVK--SNVITYSTLMDGY 248
>gi|297820862|ref|XP_002878314.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324152|gb|EFH54573.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 475
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F+ W F H + + +FA K +W + EM + +G T T
Sbjct: 134 AYRFFVWSGEQDCFRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQ--DGFPTTARTFNL 191
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI GE GL +A+ F + K F RP ++YN ++N+L V + ++ EQM G
Sbjct: 192 LICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYEQMLEDG 251
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F PDV TY IL+ + + G
Sbjct: 252 F--SPDVLTYNILLWTNYRLG 270
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
EM+R G T + L+ +LG+ AL T MK+ V Y +I+
Sbjct: 278 LFDEMARDGLSPDFYTYNI--LLHILGKGNKPLAALTTLNHMKEVGIDLSVLHYTTLIDG 335
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L R GN ++ L++M G C PDV YT++I+ Y G
Sbjct: 336 LSRAGNLEACKYFLDEMVKAG--CRPDVVCYTVMITGYVVSG 375
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+R N++ FL EM + G V TV V+ G + +A F M
Sbjct: 336 LSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVS--GELEKAKEMFKEMTVEGQL 393
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V+ YN +I LC G F +A +LL++ME G C P+ Y+ L+S K G
Sbjct: 394 PNVFTYNSMIRGLCMAGEFREACWLLKEMESRG--CNPNFVVYSTLVSYLRKAG 445
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI L G + M + CRPDV Y V+I G KA+ + ++M +
Sbjct: 330 TTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELEKAKEMFKEMTV 389
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G P+V+TY +I C G
Sbjct: 390 EG--QLPNVFTYNSMIRGLCMAG 410
>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 536
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI+ L G +AL M F C PD+ YN +I C+ NKA + +
Sbjct: 206 TKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFK 265
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
++ G C PDV TYT +IS YCK G
Sbjct: 266 DVK-SGSVCSPDVVTYTSMISGYCKAG 291
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
V L+ L + V +A+ F +F+ D +N++I LC VG KA LL M
Sbjct: 174 VNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMS 233
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
GF C PD+ TY LI +CK
Sbjct: 234 --GFGCEPDIVTYNTLIQGFCK 253
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 85 KEADNIANNVLVLGPAAYRNPQKVTL-----GINKATEFYHWVER-----FFHFFHNEVT 134
+EA ++ +++L LG P VT G KA E E F F + VT
Sbjct: 294 REASSLLDDMLRLGIY----PTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVT 349
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
+ + R V + +EM+ RG T + LI L E + +A +
Sbjct: 350 FTSLIDGYCRVGQVSQGFRLWEEMNARG--MFPNAFTYSILINALCNENRLLKARELLGQ 407
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+ P + YN VI+ C+ G N+A ++E+ME +C PD T+TILI +C
Sbjct: 408 LASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKK--KCKPDKITFTILIIGHCMK 465
Query: 255 G 255
G
Sbjct: 466 G 466
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+NKA+E + V+ + VT M + + ++ L +M R G T T
Sbjct: 257 LNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLG--IYPTNVT 314
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
L+ + G + A +M F C PDV + +I+ CRVG ++ L E+M
Sbjct: 315 FNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMN 374
Query: 232 LPGFRCPPDVYTYTILISSYC 252
G P+ +TY+ILI++ C
Sbjct: 375 ARGMF--PNAFTYSILINALC 393
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G VNEA M++ +C+PD + ++I C G +A + +M G C PD
Sbjct: 431 GKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIG--CSPDKI 488
Query: 243 TYTILISSYCKYGM 256
T + L+S K GM
Sbjct: 489 TVSSLLSCLLKAGM 502
>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 560
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A +F+ W + + H+ T M + R N + L+EM R G V T
Sbjct: 50 ALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNR-- 107
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G + EA+ FY+M++ C PD Y +++ + G + A + ++M+ G
Sbjct: 108 LIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAG 167
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PD +TY+++I K G
Sbjct: 168 FQ--PDTFTYSVIIHCLGKAG 186
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T + +I LG+ G V+EAL F M + P + YN++I+ + GN+ A L
Sbjct: 172 TFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYN 231
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
M+ GF PD TY+I++ + G
Sbjct: 232 DMQDAGFH--PDRVTYSIMMEVLGQIG 256
>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
Length = 536
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI+ L G +AL M F C PD+ YN +I C+ NKA + +
Sbjct: 206 TKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFK 265
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
++ G C PDV TYT +IS YCK G
Sbjct: 266 DVK-SGSVCSPDVVTYTSMISGYCKAG 291
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 85 KEADNIANNVLVLGPAAYRNPQKVTL-----GINKATEFYHWVER-----FFHFFHNEVT 134
+EA ++ +++L LG P VT G KA E E F F + VT
Sbjct: 294 REASSLLDDMLRLGIY----PTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVT 349
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
+ + R V + +EM+ RG T + LI L E + +A +
Sbjct: 350 FTSLIDGYCRVGQVSQGFRLWEEMNARG--MFPNAFTYSILINALCNENRLLKARELLGQ 407
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+ P + YN VI+ C+ G N+A ++E+ME +C PD T+TILI +C
Sbjct: 408 LASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKK--KCKPDKITFTILIIGHCMK 465
Query: 255 G 255
G
Sbjct: 466 G 466
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
V L+ L + V +A+ F +F+ D +N++I LC VG KA LL M
Sbjct: 174 VNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMS 233
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
GF C PD+ TY LI +CK
Sbjct: 234 --GFGCEPDIVTYNTLIQGFCK 253
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+NKA+E + V+ + VT M + + ++ L +M R G T T
Sbjct: 257 LNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLG--IYPTNVT 314
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
L+ + G + A +M F C PDV + +I+ CRVG ++ L E+M
Sbjct: 315 FNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMN 374
Query: 232 LPGFRCPPDVYTYTILISSYC 252
G P+ +TY+ILI++ C
Sbjct: 375 ARGMF--PNAFTYSILINALC 393
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G VNEA M++ +C+PD + ++I C G +A + +M G C PD
Sbjct: 431 GKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIG--CSPDKI 488
Query: 243 TYTILISSYCKYGM 256
T + L+S K GM
Sbjct: 489 TVSSLLSCLLKAGM 502
>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
A+ N+ +W +KEMSR+G + + + +T+ + LG+ + A F RM + C
Sbjct: 285 LAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTI---MDALGKANKPDAAREVFARMVESGC 341
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+PD+ +YN++I++ R G+ +AR +LE+M GF P+ TY LI
Sbjct: 342 KPDLISYNILIDSYARFGDAAQARQMLEEMVEAGF--IPETKTYNSLI 387
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ + G ++ AL F MK+ +P V YN++++ALC G AR L +M
Sbjct: 172 TYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKM 231
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C PD YTY+ L++ K G
Sbjct: 232 TGDG--CSPDSYTYSTLVNGLGKSG 254
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R + + +EM +G+ T L+ LG+ G V EA + F M +
Sbjct: 110 FGRSGQLDSAMEMFREMKIKGSEP--DEYTYGFLVNALGKAGRVQEARSFFDAMLERGLT 167
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++ YN++++A +VG + A L +M+ GF+ P V TY IL+ + C G
Sbjct: 168 PNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQ--PSVVTYNILLDALCSAG 219
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+AR + L+EM G + T T LI L +G V+EA A M+ CR
Sbjct: 355 YARFGDAAQARQMLEEMVEAGF--IPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCR 412
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
PDV YN +++ L + G +A L +QM+ G PD +Y + I
Sbjct: 413 PDVVTYNRLMDMLGKRGENQRAARLFQQMKDKG--VEPDTLSYAVRIDG 459
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI+ G G ++ A+ F MK PD Y Y ++NAL + G +AR + M G
Sbjct: 106 LIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERG 165
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P++ TY +L+ ++ K G
Sbjct: 166 L--TPNIPTYNLLMDAFRKVG 184
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ RGN +D + T T LI +L G A + ++ Q C
Sbjct: 39 AYGRGNKSGDAFDLFNQAESFACSP--TVHAFTKLIDILVNSGEFERAELVYKKLVQKGC 96
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ D +AYNV+I R G + A + +M++ G PD YTY L+++ K G
Sbjct: 97 QLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKG--SEPDEYTYGFLVNALGKAG 149
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM RG V L+ L + G ++ M + PD +++N +++AL
Sbjct: 264 REMVDRGVA--VDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALG 321
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ + AR + +M G C PD+ +Y ILI SY ++G
Sbjct: 322 KANKPDAAREVFARMVESG--CKPDLISYNILIDSYARFG 359
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M +V A + L LKEM G + +T+ LI G +A F + +
Sbjct: 1 MLVVLASWGILDPLETLLKEMV--AEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAES 58
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
F C P V+A+ +I+ L G F +A + +++ G C D + Y +LI + + G
Sbjct: 59 FACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKG--CQLDRFAYNVLIRYFGRSG 114
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EM RRG V T + L+ L G V A F++M C PD Y Y+ ++N L +
Sbjct: 195 EMKRRGFQPSVVTYNI--LLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGK 252
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
G +A + +M G D+ Y L+++ K G
Sbjct: 253 SGRVEEAHKVFREMVDRGVAV--DLVNYNSLLATLAKAG 289
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ +LG+ G A F +MK PD +Y V I+ L ++A L + M
Sbjct: 417 TYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDM 476
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G CP D Y ILI + + G
Sbjct: 477 KAVG--CPVDKAMYRILIRAAHRAG 499
>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
Length = 1128
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 6/149 (4%)
Query: 108 VTLG-INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL 166
+ LG + +AT+ + ++RF F +C + FA+ G+ F K+M G G
Sbjct: 74 IDLGMLEEATQCFSKMKRF-RVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMI--GAGSK 130
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
T T +I + +EG + A F MK PD YN +I+ +VG + +
Sbjct: 131 PTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYF 190
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
E+M+ C PDV TY LI+ +CK G
Sbjct: 191 FEEMK--SMSCEPDVITYNSLINCFCKSG 217
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 136 KEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
KE I ARG +EM RG + T T +I G+ G +++ + F M
Sbjct: 145 KEGDIEAARG--------LFEEMKFRG--LIPDTVTYNSMIDGYGKVGRLDDTVYFFEEM 194
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
K C PDV YN +IN C+ G K +M+ G + P+V +Y+ L+ ++CK
Sbjct: 195 KSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLK--PNVVSYSTLVDAFCKED 252
Query: 256 M 256
M
Sbjct: 253 M 253
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK- 196
M F GN +GL L+EM + VT T LI L + LV++A+ F RM
Sbjct: 420 MDAYFKSGNPTEGLH-LLEEMQELDHE--VTVVTFCVLIDGLCKNKLVSKAIDYFGRMSN 476
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
F +P+ Y +I+ LC+ A L EQM G PD YT L+ K G
Sbjct: 477 DFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGL--VPDRTAYTSLMDGNLKQG 533
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 37/116 (31%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFR----------------------------------- 199
L VL + G++ EA F +MK+FR
Sbjct: 69 LFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAG 128
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P V+ YN++I+ + + G+ AR L E+M+ G PD TY +I Y K G
Sbjct: 129 SKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGL--IPDTVTYNSMIDGYGKVG 182
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 149 KGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
KGL +F +EM + G +V+ ST L+ +E ++ +A+ + M++ P+ + Y
Sbjct: 221 KGL-EFYREMKQSGLKPNVVSYST---LVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTY 276
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+++A C++GN + A L +M G +V TYT LI C
Sbjct: 277 TSLVDANCKIGNLSDAFRLANEMLEVGVEW--NVVTYTALIDGLC 319
>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
Length = 761
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LIK L +EGL+ +AL M + C D++ YN+VIN LC++G + A L+ G
Sbjct: 397 LIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKG 456
Query: 235 FRCPPDVYTYTILISSYCK 253
+ PDV+T+ LI YCK
Sbjct: 457 Y--VPDVFTFNTLIDGYCK 473
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 6/154 (3%)
Query: 100 AAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMS 159
AA QK L KA E ++ V+R F H+ +T K + N + + L E
Sbjct: 11 AAVLKQQKDPL---KALEMFNKVKREDGFKHSLLTYKCIIQKLGFHGNFVAMENVLAETR 67
Query: 160 RRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
+ L+ + + K G +G V EA+ F RM + C P V +YN ++N L G
Sbjct: 68 MDIDNSLLEGVYIGAM-KSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGY 126
Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
F +A + +M+ G PDVYT+TI I S+C+
Sbjct: 127 FKQAHKVFLRMKNVGI--VPDVYTFTIRIKSFCR 158
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T I+ L +G+++ A++ + + PDV YN +I LC+ N +A L ++
Sbjct: 253 TFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKL 312
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
G PD +TY LI YCK GM
Sbjct: 313 VNGGLE--PDGFTYNTLIDGYCKMGM 336
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
FA ++KG + + M + TT+T +I E+ ++ F M C
Sbjct: 576 FANNGDLKGAYQLFRRMGEQYKVSH-TTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCA 634
Query: 202 PDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYC 252
PD Y Y V+I+ C GN + +FLLE +E GF P + T+ +I+ C
Sbjct: 635 PDTYTYRVMIDGFCITGNTDSGYKFLLEMIE-KGF--IPSLTTFGRVINCLC 683
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + ++ ALA F +P V YN++I LC+ G +A ++ +M
Sbjct: 358 TYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEM 417
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C D++TY ++I+ CK G
Sbjct: 418 SENG--CSSDIWTYNLVINGLCKMG 440
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 14/153 (9%)
Query: 111 GINKATEFYHWVERFFHFFH-----NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE 165
G++KA + +E F N++T + + V D + E+ +G
Sbjct: 505 GLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKG--- 561
Query: 166 LVTTSTVT--CLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNK 222
+T TV+ +I G + A F RM +Q++ YN++INA + +
Sbjct: 562 -ITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHM 620
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L +M G C PD YTY ++I +C G
Sbjct: 621 GEKLFLEMGAGG--CAPDTYTYRVMIDGFCITG 651
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R + G L + R G ++VT +T+ C L + V EA +++
Sbjct: 261 LCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLIC---GLCKNSNVVEAEKYLHKLVNGGL 317
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD + YN +I+ C++G A +L+ GF PD +TY LI+ C+
Sbjct: 318 EPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGF--VPDEFTYCSLINGLCQ 368
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
ST L+ L ++G V E+ ++ + +++ +N+ I LCR G + A +L+
Sbjct: 217 STFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDS 276
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
+ G PDV TY LI CK
Sbjct: 277 VIREGL--TPDVVTYNTLICGLCK 298
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ +L E G +A F RMK PDVY + + I + CR + A LL M G
Sbjct: 117 IMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQG 176
Query: 235 FRCPPDVYTYTILISSY 251
C + Y +++ +
Sbjct: 177 --CQLNAVAYCTVVAGF 191
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
EE EA F M + PDV +N +++ LC+ G ++ LL ++ G +
Sbjct: 193 EENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGM--CSN 250
Query: 241 VYTYTILISSYCKYGM 256
++T+ I I C+ GM
Sbjct: 251 LFTFNIFIQGLCRKGM 266
>gi|116787233|gb|ABK24422.1| unknown [Picea sitchensis]
Length = 504
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
+A +F+ W H+ + + + +WD +K M +G +V+T T++
Sbjct: 94 EAMKFFRWAGLKLSSKHSPLAWNLLVDLLGSDKLFDAMWDCIKIMKNQG---IVSTETLS 150
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
+ + G V+EA TF M+Q+ CR DV A N I+ALCR + + + LE +
Sbjct: 151 SVFGNYVQAGKVDEARMTFEVMEQYGCRQDVVALNCYISALCR---YKQVKAALEFFDSV 207
Query: 234 GFRCPPDVYTYTILISSY 251
R PD TY +L+ +
Sbjct: 208 KERIAPDADTYALLLEGW 225
>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Glycine max]
Length = 905
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
F + + + L+E+ ++G +T +T T CL+ L + ++EAL F MK +
Sbjct: 701 FGKVGRIDEAYLILEELMQKG----LTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLK 756
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+ Y++++N LC+V FNKA ++M+ G + P+ TYT +IS + G
Sbjct: 757 CPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLK--PNTITYTTMISGLARVG 810
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V W F E+ + G + T T +I VL + V+EA+ F + +
Sbjct: 282 FGKVGKVDMAWKFFHEL--KSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSV 339
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P VYAYN +I VG FN+A LLE+ + G C P V Y +++ + G
Sbjct: 340 PCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKG--CIPSVIAYNCILTCLGRKG 391
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M VF G KG F +E+ +G V + ++ LI L + G + FY MK+
Sbjct: 558 MDCVFKAGEIEKGRALF-EEIKAQGLTPDVRSYSI--LIHGLVKGGFSKDTYKLFYEMKE 614
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
D AYN+VI+ C+ G NKA LLE+M+ G + P V TY +I K
Sbjct: 615 QGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQ--PTVVTYGSVIDGLAK 668
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 14/143 (9%)
Query: 122 VERFFHFFH---------NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
V+ + FFH ++VT M V + V + +E+ N +
Sbjct: 288 VDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELD--SNKSVPCVYAY 345
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+I G G NEA + R K+ C P V AYN ++ L R G +A +LE M++
Sbjct: 346 NTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKM 405
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
P++ +Y ILI CK G
Sbjct: 406 DA---APNLTSYNILIDMLCKAG 425
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A ++ WVER H+ + ++ AR N++ L L+EMS G G + +T
Sbjct: 115 ALHYFRWVERKTKQLHSPEAYNALLMLMARTRNLEYLEQILEEMSMAGFGP--SNNTCIE 172
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ + + EA M++F+ RP AY +I AL + LL QM+ G
Sbjct: 173 MVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIG 232
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ V+ +T LI + + G
Sbjct: 233 YEVT--VHLFTTLICVFAREG 251
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ L+ R+G + + C++ LG +G V EAL MK P++ +YN++I
Sbjct: 362 YSLLERQKRKGC--IPSVIAYNCILTCLGRKGKVEEALRILEAMK-MDAAPNLTSYNILI 418
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ LC+ G A + + M+ G P++ T I+I CK
Sbjct: 419 DMLCKAGELEAALKVQDSMKEAGLF--PNIITVNIMIDRLCK 458
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G VT T LI V EG V+ AL+ MK D+ YNV I+ +VG + A
Sbjct: 232 GYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMA 291
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+++ G PD T+T +I CK
Sbjct: 292 WKFFHELKSQGL--VPDDVTFTSMIGVLCK 319
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V + L+EM +G T T +I L + ++EA F K
Sbjct: 631 FCKSGKVNKAYQLLEEMKTKGLQP--TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVD 688
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+V Y+ +I+ +VG ++A +LE++ G P+ YT+ L+ + K
Sbjct: 689 LNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGL--TPNTYTWNCLLDALVK 738
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G+ T LI+ + G + + M C PD+ N ++ + + G K
Sbjct: 510 SGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEK 569
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R L E+++ G PDV +Y+ILI K G
Sbjct: 570 GRALFEEIKAQGL--TPDVRSYSILIHGLVKGG 600
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 156 KEMSRRGNGE--LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
KEM RG ++ + + C+ K G + + A F +K PDV +Y+++I+
Sbjct: 540 KEMMHRGCSPDLMLLNNYMDCVFKA----GEIEKGRALFEEIKAQGLTPDVRSYSILIHG 595
Query: 214 LCRVGNFNKARF-LLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L + G F+K + L +M+ G D Y I+I +CK G
Sbjct: 596 LVK-GGFSKDTYKLFYEMKEQGLHL--DTRAYNIVIDGFCKSG 635
>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 864
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T T T LIK L + GL+++A F M C+P+V+ Y V+I+ LCR G +A +
Sbjct: 300 STRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVC 359
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M G P V TY LI+ YCK G
Sbjct: 360 RKMVKDGIF--PSVITYNALINGYCKDG 385
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Query: 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS 170
G +A E + F + + + F RG N++ MSR G + S
Sbjct: 209 GYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCRGLNLRDALKVFDLMSREGTCAPNSVS 268
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ LI L E G + EA +M + C+P Y V+I ALC G +KA L ++M
Sbjct: 269 -YSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEM 327
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P+V+TYT+LI C+ G
Sbjct: 328 IARG--CKPNVHTYTVLIDGLCRDG 350
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
L T ++ ++ +L + + E LA ++ + P V Y +++ L R G+ + +
Sbjct: 543 LTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFR 602
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+LE M+L G C P+VY YTI+I+ C++G
Sbjct: 603 MLELMKLSG--CLPNVYPYTIIINGLCQFG 630
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+A+ RM PD+ +YNV+I+ LCR G+ N A LL M F PD T+T
Sbjct: 424 KAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMN--SFDLEPDCLTFTA 481
Query: 247 LISSYCKYG 255
+I+++CK G
Sbjct: 482 IINAFCKQG 490
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + + T T L+ L G ++ + MK C P+VY Y ++IN LC+ G +A
Sbjct: 576 GLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEA 635
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL M+ G P+ TYT+++ Y G
Sbjct: 636 EKLLSAMQDSGV--SPNHVTYTVMVKGYVNNG 665
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G + T LI ++G V A M++ C+P+V +N ++ LCRVG K
Sbjct: 365 DGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYK 424
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A LL++M G PD+ +Y +LI C+ G
Sbjct: 425 AVHLLKRMLDNGL--SPDIVSYNVLIDGLCREG 455
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 185 VNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
+ +AL F M ++ C P+ +Y+++I+ LC VG +A L +QM G C P T
Sbjct: 246 LRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKG--CQPSTRT 303
Query: 244 YTILISSYCKYGM 256
YT+LI + C G+
Sbjct: 304 YTVLIKALCDRGL 316
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 149 KGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
+GL D EM RG V T TV LI L +G + EA +M + P V
Sbjct: 314 RGLIDKAFNLFDEMIARGCKPNVHTYTV--LIDGLCRDGKIEEANGVCRKMVKDGIFPSV 371
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN +IN C+ G A LL ME C P+V T+ L+ C+ G
Sbjct: 372 ITYNALINGYCKDGRVVPAFELLTVMEKRA--CKPNVRTFNELMEGLCRVG 420
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L EG +N A M F PD + +INA C+ G + A L M G
Sbjct: 447 LIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKG 506
Query: 235 FRCPPDVYTYTILISSYCKYG 255
D T T LI C G
Sbjct: 507 I--SLDEVTGTTLIDGVCNVG 525
>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI L + G +A+ F M CRPDVY Y +IN LC++G A LL
Sbjct: 167 TIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLL 226
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++ME G C P+V TY+ +I S+ K
Sbjct: 227 KKMEEAG--CQPNVVTYSTIIDSHRK 250
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T++ LI V+ A + ++ + +P + + +IN LC+VG F +A L + M
Sbjct: 135 TLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDM 194
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C PDVYTYT +I+ CK G
Sbjct: 195 VARG--CRPDVYTYTTIINGLCKIG 217
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG L T + L+ ++G +A F M+ +P++ YN++I+A+C+ GN
Sbjct: 442 NGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRD 501
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
AR L ++ + G + P+ YT +I+ CK G+
Sbjct: 502 ARKLFSELFVKGLQ--PNAQIYTTIINGLCKEGL 533
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
LK+M G +VT ST+ I ++ VNEAL F MK PD++ YN +I
Sbjct: 225 LLKKMEEAGCQPNVVTYSTI---IDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQ 281
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC + +A LL +M PD+ T+ +L+ + CK G
Sbjct: 282 GLCNFSQWKEASALLNEMR--SLNIMPDIVTFNVLVDTICKEG 322
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 14/125 (11%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALA 190
+ CKE + A+G LK M+ G ++VT S++ + E V EA
Sbjct: 316 DTICKEGKVSEAQG--------VLKTMTEMGVEPDVVTYSSLMYGYSLRSE---VVEARK 364
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F M C+PDV++YN++IN C+V ++A+ L +M G P+ +Y LI
Sbjct: 365 LFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGL--TPNNVSYNTLIHG 422
Query: 251 YCKYG 255
C+ G
Sbjct: 423 LCQLG 427
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ + +EG V+EA M + PDV Y+ ++ +AR L + M
Sbjct: 310 TFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAM 369
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C PDV++Y ILI+ YCK
Sbjct: 370 ITKG--CKPDVFSYNILINGYCK 390
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA F M P+ +YN +I+ LC++G+ +AR L + M G P+++TY
Sbjct: 394 IDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNL--PNLFTY 451
Query: 245 TILISSYCKYG 255
+IL+ +CK G
Sbjct: 452 SILLDGFCKQG 462
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L +EGL++EAL F M++ C PD +YNV+I + ++A L+ +M
Sbjct: 522 TTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRD 581
Query: 233 PGF 235
GF
Sbjct: 582 KGF 584
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G + EA F M P+++ Y+++++ C+ G F KA L M+
Sbjct: 419 LIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQ--S 476
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P++ Y ILI + CK G
Sbjct: 477 TYSKPNLVMYNILIDAMCKSG 497
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I L + G A +M++ C+P+V Y+ +I++ + N+A + M
Sbjct: 205 TYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYM 264
Query: 231 ELPGFRCPPDVYTYTILISSYCKY 254
++ G PD++TY LI C +
Sbjct: 265 KVKGI--SPDIFTYNSLIQGLCNF 286
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI + + G + +A F + +P+ Y +IN LC+ G ++A ME G
Sbjct: 489 LIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDG 548
Query: 235 FRCPPDVYTYTILISSY 251
CPPD +Y ++I +
Sbjct: 549 --CPPDEISYNVIIRGF 563
>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
Length = 628
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D L+EMS+ G + T ++ L + G V+ AL+ MK PD+ YN +++
Sbjct: 395 DLLEEMSKEGV--FPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLD 452
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G ++A L +M +C PDV++YTI+I++ C+ G
Sbjct: 453 GLCKAGRIDEAITFLAKM--VAAKCTPDVFSYTIIITALCRSG 493
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
++ V L+ M RG+ +LVT +T L+ L + G ++EA+ +M +
Sbjct: 418 ALSKAGKVDYALSHLETMKARGSTPDLVTYNT---LLDGLCKAGRIDEAITFLAKMVAAK 474
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
C PDV++Y ++I ALCR G A + ++M G PD Y L+ + G++
Sbjct: 475 CTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVL--PDTVLYHSLLDGLARNGLE 530
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ + V + K MS G G + T L+K L ++EA F M + C P+
Sbjct: 120 KASRVDDALEIFKTMSS-GGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPN 178
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
V +Y+ +++ LC+ G ++A L E+M C PD+ YT ++ CK
Sbjct: 179 VISYSTLLDGLCKAGRLDEACRLWEEMVEKS--CVPDLVAYTSFVTGLCK 226
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
MK+F C P++ YN++++ LC+ ++A+ L+ +M G PDV TY+ L+ CK
Sbjct: 330 MKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGL--SPDVVTYSALVDGLCKL 387
Query: 255 G 255
G
Sbjct: 388 G 388
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R G +EM +RG L T L+ L GL + AL +K C
Sbjct: 488 ALCRSGQAAGAHAIFQEMVKRGV--LPDTVLYHSLLDGLARNGLEDLALEL---LKTSLC 542
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD + +V++ LC+ G A ++E+M GF P D +TY ++S K G
Sbjct: 543 KPDFVMHKMVLDGLCKAGKAEDACEVVERMADAGF--PADAFTYISVVSGLRKLG 595
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
L+D+L R G + T C + L + A F +M++ PD + Y++V
Sbjct: 24 LFDWLG----RQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIV 79
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ LC+ G +KA+ LL Q+ G + +V TY+++I CK
Sbjct: 80 LRGLCKAGELDKAKELLGQLRESGVK--LNVITYSVVIDGCCK 120
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 141 VFARGNNVKGLWDFLKEM--SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
+ RG G D KE+ R +G + T + +I + V++AL F M
Sbjct: 78 IVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSG 137
Query: 199 R-CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C PDV +N ++ LC ++A L E M G C P+V +Y+ L+ CK G
Sbjct: 138 GGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAG--CEPNVISYSTLLDGLCKAG 193
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 65/141 (46%), Gaps = 3/141 (2%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
I+ + W+ R + H+ T A+ N + ++ ++M RRG T +
Sbjct: 18 ISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYS 77
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ +++ L + G +++A ++++ + +V Y+VVI+ C+ + A + + M
Sbjct: 78 I--VLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMS 135
Query: 232 LPGFRCPPDVYTYTILISSYC 252
G C PDV T+ L+ C
Sbjct: 136 -SGGGCVPDVVTFNSLLKGLC 155
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA M + PDV Y+ +++ LC++G ++A LLE+M G PD +T
Sbjct: 355 LDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVF--PDSFTD 412
Query: 245 TILISSYCKYG 255
++++ K G
Sbjct: 413 ASILNALSKAG 423
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ + EM+ G V T + L+ L + G ++ A M + PD + ++N
Sbjct: 360 ELVNEMANYGLSPDVVTYSA--LVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILN 417
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
AL + G + A LE M+ G PD+ TY L+ CK G
Sbjct: 418 ALSKAGKVDYALSHLETMKARGS--TPDLVTYNTLLDGLCKAG 458
>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
Length = 628
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D L+EMS+ G + T ++ L + G V+ AL+ MK PD+ YN +++
Sbjct: 395 DLLEEMSKEGV--FPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLD 452
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G ++A L +M +C PDV++YTI+I++ C+ G
Sbjct: 453 GLCKAGRIDEAITFLAKM--VAAKCTPDVFSYTIIITALCRSG 493
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
++ V L+ M RG+ +LVT +T L+ L + G ++EA+ +M +
Sbjct: 418 ALSKAGKVDYALSHLETMKARGSTPDLVTYNT---LLDGLCKAGRIDEAITFLAKMVAAK 474
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
C PDV++Y ++I ALCR G A + ++M G PD Y L+ + G++
Sbjct: 475 CTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVL--PDTVLYHSLLDGLARNGLE 530
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ + V + K MS G G + T L+K L ++EA F M + C P+
Sbjct: 120 KASRVDDALEIFKTMSA-GGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPN 178
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
V +Y+ +++ LC+ G ++A L E+M C PD+ YT ++ CK
Sbjct: 179 VISYSTLLDGLCKAGRLDEACRLWEEMVEKS--CVPDLVAYTSFVTGLCK 226
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
MK+F C P++ YN++++ LC+ ++A+ L+ +M G PDV TY+ L+ CK
Sbjct: 330 MKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGL--SPDVVTYSALVDGLCKL 387
Query: 255 G 255
G
Sbjct: 388 G 388
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
L+D+L R G + T C + L + A F +M++ PD + Y++V
Sbjct: 24 LFDWLG----RQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIV 79
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ LC+ G +KA+ LL Q+ G + +V TY+++I CK
Sbjct: 80 LRGLCKAGELDKAKELLGQLRESGVK--LNVITYSVVIDGCCK 120
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R G +EM +RG L T L+ L GL + AL +K C
Sbjct: 488 ALCRSGQAAGAHAIFQEMVKRGV--LPDTVLYHSLLDGLARNGLEDLALEL---LKTSLC 542
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD + +V++ LC+ G A ++E+M GF P D +TY ++ K G
Sbjct: 543 KPDFVMHKMVVDGLCKAGKAEDACEVVERMADAGF--PADAFTYINVVRGLRKLG 595
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 141 VFARGNNVKGLWDFLKEM--SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
+ RG G D KE+ R +G + T + +I + V++AL F M
Sbjct: 78 IVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAG 137
Query: 199 R-CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C PDV +N ++ LC ++A L E M G C P+V +Y+ L+ CK G
Sbjct: 138 GGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAG--CEPNVISYSTLLDGLCKAG 193
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 65/141 (46%), Gaps = 3/141 (2%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
I+ + W+ R + H+ T A+ N + ++ ++M RRG T +
Sbjct: 18 ISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYS 77
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ +++ L + G +++A ++++ + +V Y+VVI+ C+ + A + + M
Sbjct: 78 I--VLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMS 135
Query: 232 LPGFRCPPDVYTYTILISSYC 252
G C PDV T+ L+ C
Sbjct: 136 -AGGGCVPDVVTFNSLLKGLC 155
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA M + PDV Y+ +++ LC++G ++A LLE+M G PD +T
Sbjct: 355 LDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVF--PDSFTD 412
Query: 245 TILISSYCKYG 255
++++ K G
Sbjct: 413 ASILNALSKAG 423
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ + EM+ G V T + L+ L + G ++ A M + PD + ++N
Sbjct: 360 ELVNEMANYGLSPDVVTYSA--LVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILN 417
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
AL + G + A LE M+ G PD+ TY L+ CK G
Sbjct: 418 ALSKAGKVDYALSHLETMKARGS--TPDLVTYNTLLDGLCKAG 458
>gi|356564752|ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Glycine max]
Length = 544
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI+ L G V+EA M F C PD+ YN++++ LCR+ ++AR LLE++
Sbjct: 215 TFNILIRGLCTAGDVDEAFELLGDMGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEV 274
Query: 231 ELPGFRC--PPDVYTYTILISSYCK 253
L +C P+V +YT +IS YC+
Sbjct: 275 CL---KCEFAPNVVSYTTVISGYCR 296
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N +T + + R V D +EM+ R + T +V LI L + + EA
Sbjct: 353 NVITLTSLINGYCRAGWVNHGLDLWREMNARNIPANLYTYSV--LISALCKSNRLQEARN 410
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+KQ P + YN VI+ C+ GN ++A ++ +ME +C PD T+TILI
Sbjct: 411 LLRILKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVAEMEE---KCKPDKLTFTILIIG 467
Query: 251 YCKYG 255
+C G
Sbjct: 468 HCMKG 472
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
+ +L + +++A+ F + + D + +N++I LC G+ ++A LL M F
Sbjct: 185 LNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDVDEAFELLGDM--GSF 242
Query: 236 RCPPDVYTYTILISSYCK 253
C PD+ TY IL+ C+
Sbjct: 243 GCSPDIVTYNILLHGLCR 260
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA + FY M + +P+V+ ++ +++ + G+ A + +++ G C P+V T
Sbjct: 300 MDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGMHKKILFHG--CAPNVITL 357
Query: 245 TILISSYCKYG 255
T LI+ YC+ G
Sbjct: 358 TSLINGYCRAG 368
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EM R G V T + L+ + G + AL ++ C P+V +IN CR
Sbjct: 309 EMVRSGTKPNVFT--FSALVDGFVKAGDMASALGMHKKILFHGCAPNVITLTSLINGYCR 366
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
G N L +M P ++YTY++LIS+ CK
Sbjct: 367 AGWVNHGLDLWREMNARNI--PANLYTYSVLISALCK 401
>gi|326513138|dbj|BAK06809.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ NG T +I G GLV++A F M C+PDV YN +IN L + G+
Sbjct: 455 KANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMNASSCKPDVITYNSLINCLGKNGDL 514
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++A L ++M+ G+ PDV+TY+ILI + K
Sbjct: 515 DEAHMLFKEMQEKGY--GPDVFTYSILIECFGK 545
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R V ++ +EM R+G ++ L+ L + G+V++A F MKQ C PD
Sbjct: 198 RSREVSKGFEVYEEMRRKGY--MLDIFGYNMLLDALAKSGMVDQAYQVFEDMKQKYCEPD 255
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
Y Y ++I R G +K ++M G C ++ Y LI + K M
Sbjct: 256 AYTYTILIRMSGRAGKASKFLSFFDEMVSKG--CALNLIAYNTLIEALGKNKM 306
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D L M +G V + + LG+ V+ + F +MK PD++ YN++I+
Sbjct: 414 DLLHMMPEKGVATDVGMYNM--VFSALGKLKQVSFITSLFDKMKANGIAPDLFTYNIMIS 471
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ RVG +KA L E M C PDV TY LI+ K G
Sbjct: 472 SYGRVGLVDKASGLFEDMNASS--CKPDVITYNSLINCLGKNG 512
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++VL G EA+ + M + DV YN+V +AL ++ + L ++M+ G
Sbjct: 399 MLEVLCNSGKTLEAIDLLHMMPEKGVATDVGMYNMVFSALGKLKQVSFITSLFDKMKANG 458
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
PD++TY I+ISSY + G+
Sbjct: 459 I--APDLFTYNIMISSYGRVGL 478
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T C+++ V++ + M++ D++ YN++++AL + G ++A + E M
Sbjct: 188 TYKCILQAHLRSREVSKGFEVYEEMRRKGYMLDIFGYNMLLDALAKSGMVDQAYQVFEDM 247
Query: 231 ELPGFRCPPDVYTYTILI 248
+ C PD YTYTILI
Sbjct: 248 KQK--YCEPDAYTYTILI 263
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI LG+ G ++EA F M++ PDV+ Y+++I + + A L M
Sbjct: 500 TYNSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMACNLFLDM 559
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P+V TY IL+ ++G
Sbjct: 560 IAEG--CIPNVVTYNILLDCLERHG 582
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
KEM +G G V T ++ LI+ G+ V+ A F M C P+V YN++++
Sbjct: 520 LFKEMQEKGYGPDVFTYSI--LIECFGKSNKVDMACNLFLDMIAEGCIPNVVTYNILLDC 577
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
L R G +A E M+ G PD T +IL
Sbjct: 578 LERHGKTAEAHKHYETMKQQGL--TPDSITCSIL 609
>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
Length = 442
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T T LI+ L EG + EAL F +M +P+V Y +IN LC+VGN + A LL
Sbjct: 116 TTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRS 175
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
ME C PDV YT +I S CK
Sbjct: 176 MEQG--NCQPDVVIYTSIIDSLCK 197
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G + A+ M+Q C+PDV Y +I++LC+ +A L QM G
Sbjct: 156 LINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQG 215
Query: 235 FRCPPDVYTYTILISSYC 252
PD++TYT L+ + C
Sbjct: 216 IS--PDIFTYTSLVHALC 231
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L ++ V EA F +M PD++ Y +++ALC + + LL QM
Sbjct: 189 TSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQM-- 246
Query: 233 PGFRCPPDVYTYTILISSYCKYGMQT 258
+ PDV ++ ++ + CK G T
Sbjct: 247 VNSKILPDVVIFSTVVDALCKEGKVT 272
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+M + PDV ++ V++ALC+ G +A +++ M G PDV TYT L+ +C
Sbjct: 245 QMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVE--PDVVTYTTLMDGHC 301
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++AL++F R+ P + + ++ ++ ++ +++ L QM+ F PP+VYT
Sbjct: 26 LDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMD--SFGVPPNVYTL 83
Query: 245 TILISSYC 252
ILI+S+C
Sbjct: 84 NILINSFC 91
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++V STV + L +EG V EA M Q PDV Y +++ C ++A
Sbjct: 254 DVVIFSTV---VDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAV 310
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ + M GF PDV +YT LI++ K G
Sbjct: 311 KVFDMMVRKGF--APDVISYTTLINAGKKDG 339
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A + ++ + +PD + +I LC G +A L ++M GF+ P+V TY L
Sbjct: 99 AFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQ--PNVVTYGTL 156
Query: 248 ISSYCKYG 255
I+ CK G
Sbjct: 157 INGLCKVG 164
>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
Length = 1563
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 38/175 (21%)
Query: 118 FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK 177
F++W F H+ EM + + W + M R N E + T T L++
Sbjct: 1164 FFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTR-NVE-IPVETFTILVR 1221
Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL----------------------- 214
+ GL EA+ F RM+ + C+PD A++VVI++L
Sbjct: 1222 RYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPD 1281
Query: 215 -----------CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
CR GN ++A + +M++ G P+VYTY+I+I + C+ G T
Sbjct: 1282 VVVYTSLVHGWCRAGNISEAERVFGEMKMAGIX--PNVYTYSIVIDALCRSGQIT 1334
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 33/114 (28%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-- 230
T L+ G ++EA F MK P+VY Y++VI+ALCR G +A + +M
Sbjct: 1286 TSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSEMID 1345
Query: 231 -------------------------------ELPGFRCPPDVYTYTILISSYCK 253
++ CPPD TY LI S+C+
Sbjct: 1346 VGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCR 1399
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
+ S+ + + + G VN A F +MK +CRP+ YN+++ + + L
Sbjct: 1419 LNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKL 1478
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
++M+ P+ TY +LIS++C G
Sbjct: 1479 RKEMDENEIE--PNANTYRVLISTFCGIG 1505
>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
Length = 855
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ +KEM R+G + TST + +I L V +A F MK PDVY Y ++I
Sbjct: 273 FQLIKEMMRKGF--VPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 330
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++ C+ G +A++L E+M G C P V TYT LI +Y K
Sbjct: 331 DSFCKAGLIEQAQWLFEEMRSVG--CSPTVVTYTALIHAYLK 370
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + + +M++ G L + T T LI + ++G ++ A+ +M + C
Sbjct: 489 FCKAGKIDSAQEVFLQMTK--CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT 546
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V Y +I+ LCR+G KA LL ME G C P+V TYT LI K G
Sbjct: 547 PNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG--CSPNVVTYTALIDGLGKAG 598
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G + K L L M +G V T T LI LG+ G ++ +L F +M + C P+
Sbjct: 563 GESEKAL-KLLSLMEEKGCSPNVVTYTA--LIDGLGKAGKIDLSLDLFTQMSRKGCSPNY 619
Query: 205 YAYNVVINALCRVGNFNKARFLLEQME-------LPGFRCPPDVYTYTILIS 249
Y V+IN LC G +KAR LL +M+ L G+RC ++ + + S
Sbjct: 620 VTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIAS 671
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD Y+ VI LC KA L ++M++ G PDVYTYTILI S+CK G+
Sbjct: 286 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGV--TPDVYTYTILIDSFCKAGL 338
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 63/162 (38%), Gaps = 6/162 (3%)
Query: 96 VLGPAAYRNPQKVTLGINKATEFYHWVERFFH--FFHNEVTCKEMGIVFARGNNVKGLWD 153
VL N + G+ K + + ++ F + T ++ V+ +
Sbjct: 250 VLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFL 309
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+EM G V T T+ LI + GL+ +A F M+ C P V Y +I+A
Sbjct: 310 LFQEMKMVGVTPDVYTYTI--LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHA 367
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +A + +M G C P+ TY L+ CK G
Sbjct: 368 YLKAKQVPQANDIFHRMVDAG--CRPNDVTYGALVDGLCKAG 407
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W F +EM R G T T T LI + V +A F+RM CRP+ Y ++
Sbjct: 344 WLF-EEM--RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALV 400
Query: 212 NALCRVGNFNKARFLLEQMELPG--------FRC------PPDVYTYTILISSYCK 253
+ LC+ GN +KA + ++ F C P+V TY L+ CK
Sbjct: 401 DGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCK 456
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFR 199
FA +G W +M R + +L TV C +I L E +EA++ +RM+
Sbjct: 81 FAHALCKEGRWADALDMIEREDFKL---DTVLCTHMISGLMEASYFDEAMSFLHRMRCNS 137
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C P+V Y +++ + + ++ M G C P+ + L+ SYC
Sbjct: 138 CIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEG--CNPNPSLFNSLVHSYC 188
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + V+ A M C P+ Y+ +I+ C+ G + A+ + QM
Sbjct: 446 TYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 505
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G+ P V+TYT LI K G
Sbjct: 506 TKCGYL--PSVHTYTSLIDRMFKDG 528
>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 761
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 16/127 (12%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALA 190
++ CKE ++ A + L+ M +RG ++VT ST LIK L + ++EA
Sbjct: 199 DILCKEGKVIEAN--------ELLEVMIQRGCILDIVTYST---LIKGLCMKHRISEATR 247
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP----GFRCPPDVYTYTI 246
F M++ CRPD AY ++ LC+ GN N A L ++M G +C P + +Y+I
Sbjct: 248 LFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSI 307
Query: 247 LISSYCK 253
+I CK
Sbjct: 308 IIDGLCK 314
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 8/118 (6%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+F + V + L+ M +RG ++VT ST LIK L + ++EA F MK+
Sbjct: 19 MFCKEGKVIEANELLEVMVQRGCILDIVTYST---LIKGLCMKHRISEATQLFMSMKKLG 75
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQM----ELPGFRCPPDVYTYTILISSYCK 253
CRPD AY ++ LC+ G N A L ++M G +C P + +Y+I+I CK
Sbjct: 76 CRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCK 133
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
++ CKE ++ A + L+ M +RG + T T T L+K L ++EA
Sbjct: 561 DMLCKEGKVIEAN--------ELLEVMIQRGC--IPNTVTYTTLVKGLCMNDRISEATQL 610
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP----GFRCPPDVYTYTIL 247
F +M++ C PDV Y ++ LC+ GN A L ++M G PDV +Y+I+
Sbjct: 611 FMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSII 670
Query: 248 ISSYCKYG 255
I CK+G
Sbjct: 671 IDGLCKHG 678
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 7/148 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEM----SRRGNGELV 167
I+KAT+ + +++ N VTC + + N+K + K M S G
Sbjct: 423 ISKATQLFLKMQKL-GCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKP 481
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+ + +I L + G +EA F MK PDV +Y +I+ CR G + A++L
Sbjct: 482 NAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLF 541
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M G + PDV T+++LI CK G
Sbjct: 542 NEMVDIGVQ--PDVTTFSVLIDMLCKEG 567
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA----RFL 226
T T L+K L + +++A F +M++ C P+V ++ LC+ GN A + +
Sbjct: 409 TCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNM 468
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
L G C P+ +Y+I+I CK G
Sbjct: 469 LSDTSPYGINCKPNAISYSIIIDGLCKCG 497
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PDV +Y+++I+ LC+ G ++AR L ++M+ G P+V +YT LI +C+ G
Sbjct: 661 KPDVISYSIIIDGLCKHGREDEARELFKEMKALGV--IPNVISYTSLIHGFCRSG 713
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R K EM G VTT +V LI +L +EG V EA M Q C
Sbjct: 528 FCRSGKWKDAKYLFNEMVDIGVQPDVTTFSV--LIDMLCKEGKVIEANELLEVMIQRGCI 585
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ Y ++ LC ++A L +M+ G C PDV TY L+ C+ G
Sbjct: 586 PNTVTYTTLVKGLCMNDRISEATQLFMKMQKLG--CLPDVVTYGTLMKGLCQTG 637
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+EA F MK PDV +Y +I+ CR G + KA+ L +M G R DV T +
Sbjct: 138 DEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIR--SDVTTSS 195
Query: 246 ILISSYCKYG 255
+LI CK G
Sbjct: 196 MLIDILCKEG 205
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+EA F MK PDV +Y +I+ C G + KA+ L +M G + PDV T +
Sbjct: 319 DEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQ--PDVTTSS 376
Query: 246 ILISSYCKYG 255
+LI CK G
Sbjct: 377 VLIDMLCKKG 386
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L + G +EA F MK P+V +Y +I+ CR G A+ L +M G
Sbjct: 670 IIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQG 729
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ + TY+++I +CK G
Sbjct: 730 VQ--LNAVTYSVMIHGFCKEG 748
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ KEM + G + + T LI G +A F M +PDV ++V+I+
Sbjct: 504 ELFKEM--KALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLID 561
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
LC+ G +A LLE M G C P+ TYT L+ C
Sbjct: 562 MLCKEGKVIEANELLEVMIQRG--CIPNTVTYTTLVKGLC 599
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 142 FARGNNVKGLWDFLK----EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
G + G W+ K EM G VTTS+V LI +L ++G V EA + Q
Sbjct: 343 LIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSV--LIDMLCKKGKVIEANKLLEVVIQ 400
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C PDV ++ LC +KA L +M+ G C P+V T L+ C+ G
Sbjct: 401 RGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLG--CMPNVVTCATLMKGLCQSG 456
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
VTTS V LI + +EG V EA M Q C D+ Y+ +I LC ++A L
Sbjct: 10 VTTSGV--LIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQL 67
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
M+ G C PD Y L+ C+ G
Sbjct: 68 FMSMKKLG--CRPDAIAYGTLMKGLCQTG 94
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ KEM + G + + T LI G +A F M +PDV +V+I+
Sbjct: 323 ELFKEM--KAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLID 380
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
LC+ G +A LLE + G C PDV T T L+ C
Sbjct: 381 MLCKKGKVIEANKLLEVVIQRG--CIPDVVTCTTLVKGLC 418
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ KEM + G + + T LI G +A F M R DV +++I+
Sbjct: 142 ELFKEM--KAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLID 199
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
LC+ G +A LLE M G C D+ TY+ LI C
Sbjct: 200 ILCKEGKVIEANELLEVMIQRG--CILDIVTYSTLIKGLC 237
>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
Length = 649
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFR 199
F R V+ F KEM +RG VT V +CLI + G ++ A A MK
Sbjct: 272 FCRVGEVEEAMKFYKEMQQRG----VTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLG 327
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y +VI CR G+ ++A L + E+ G C PDV TY L++ CK
Sbjct: 328 LVPDGVIYTMVIGGFCRAGSMSEA--LRVRDEMVGLGCLPDVVTYNTLLNGLCK 379
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 153 DFLKEMSRRGNGELVTTS--TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+ L EM RG VT T T LI +G +AL F + R RPDV AYN +
Sbjct: 388 ELLNEMKERG----VTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSL 443
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I+ +CR G+ KA L + M P+ TY+ILI S+C+ G
Sbjct: 444 IDGMCRKGDLAKANELWDDMH--AREIFPNHVTYSILIDSHCEKG 486
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+L+EM +G G + T +I G ++EAL M C PDV YN ++N
Sbjct: 319 YLREM--KGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNG 376
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ A LL +M+ G PD+ T+T LI YC+ G
Sbjct: 377 LCKQHRLLDAEELLNEMKERGV--TPDLCTFTTLIHGYCRDG 416
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R NVK FL++M + + L T LI +E ++ A F M++ +
Sbjct: 517 YCRSGNVKKGQQFLQKMMQ--DNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQ 574
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD YN++IN GN +A + ++M G PD YTY LI+ + G
Sbjct: 575 PDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIE--PDRYTYMSLINGHVTAG 626
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
+ EM +R V T V LI G V+ A+A M +P + +N V+ L
Sbjct: 180 ISEMEKRCVFPDVVTHNV--LIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGL 237
Query: 215 CRVGNFNKARFLLEQMELPGFRC--PPDVYTYTILISSYCKYG 255
C+ F+KA+ + M+ +C PDV ++ ILI +C+ G
Sbjct: 238 CKHRRFDKAKEVFRAMD----QCSVAPDVRSFNILIGGFCRVG 276
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 144 RGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
R +V + M+ +G +VT ++V +K L + ++A F M Q P
Sbjct: 204 RAGDVDAAIALVDSMANKGLKPGIVTFNSV---LKGLCKHRRFDKAKEVFRAMDQCSVAP 260
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
DV ++N++I CRVG +A ++M+ G PDV +++ LI + G
Sbjct: 261 DVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGV--TPDVVSFSCLIGLFSTRG 311
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI E+G V EA M P++ YN +I CR GN K + L++M
Sbjct: 474 TYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKM 533
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
PD+ T+ LI Y K
Sbjct: 534 MQDNIL--PDLITFNTLIHGYIK 554
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
++L E L+NE MK+ PD+ + +I+ CR GNF KA L + L R
Sbjct: 382 RLLDAEELLNE-------MKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDT--LLHQR 432
Query: 237 CPPDVYTYTILISSYCKYG 255
PDV Y LI C+ G
Sbjct: 433 LRPDVVAYNSLIDGMCRKG 451
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G V EA+ + M+Q PDV +++ +I G + A L +M+ G PD
Sbjct: 276 GEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMK--GLGLVPDGV 333
Query: 243 TYTILISSYCKYG 255
YT++I +C+ G
Sbjct: 334 IYTMVIGGFCRAG 346
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 15/180 (8%)
Query: 76 TPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTC 135
T L QR+ D +A N L+ G + K N+ + H E F N VT
Sbjct: 427 TLLHQRL---RPDVVAYNSLIDGMCRKGDLAKA----NELWDDMHARE----IFPNHVTY 475
Query: 136 KEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
+ V+ + FL EM +GN L T +IK G V + +M
Sbjct: 476 SILIDSHCEKGQVEEAFGFLDEMVSKGN--LPNIMTYNSIIKGYCRSGNVKKGQQFLQKM 533
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Q PD+ +N +I+ + N + A + ME + PD TY ++I+ + + G
Sbjct: 534 MQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQ--PDAVTYNMIINGFSEQG 591
>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Brachypodium distachyon]
Length = 692
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N TC + + AR + + W +++ T +I L +EG + EA A
Sbjct: 162 NTRTCNHILLCLARERSSELAWRLFEQLPAP------NVFTFNIMIDFLCKEGDLAEARA 215
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
RMK C PDV YN +I+ + G + L+ +M G C PDV TY L++
Sbjct: 216 LLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMR--GCGCRPDVVTYNALVNC 273
Query: 251 YCKYG 255
+CK+G
Sbjct: 274 FCKFG 278
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + ++ + + EM R G +VT ST + + G+V EA+ F +M+
Sbjct: 274 FCKFGRMERAYSYFAEMKREGVMANVVTFST---FVDAFCKNGMVREAMKLFAQMRMKGM 330
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P+ Y +++ C+ G + A L +M G P +V TYT+L+ CK G
Sbjct: 331 KPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGV--PLNVVTYTVLVDGLCKEG 383
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI G+ G + E M+ CRPDV YN ++N C+ G +A +M
Sbjct: 231 TYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEM 290
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
+ G +V T++ + ++CK GM
Sbjct: 291 KREGVM--ANVVTFSTFVDAFCKNGM 314
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + G ++EA++ F +M P+V AY +++ LC+ G +KA LL++M
Sbjct: 511 TYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEM 570
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G D T L+ + K G
Sbjct: 571 IDKGMSL--DNVVCTSLMDGHLKQG 593
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+EA+A +M RP++ Y +++ LC+ G+ ++A +M G P+V YT
Sbjct: 491 SEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLE--PNVQAYT 548
Query: 246 ILISSYCKYG 255
L+ CK G
Sbjct: 549 ALVDGLCKNG 558
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
RG G T L+ + G + A + F MK+ +V ++ ++A C+ G
Sbjct: 256 RGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMV 315
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A L QM + G + P+ TYT L+ CK G
Sbjct: 316 REAMKLFAQMRMKGMK--PNEVTYTCLVDGTCKAG 348
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T TCL+ + G +++AL M Q +V Y V+++ LC+ G +A + M
Sbjct: 336 TYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLM 395
Query: 231 ELPGFRCPPDVYTYTI 246
E G R +YT I
Sbjct: 396 ERAGIRANELLYTTLI 411
>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Vitis vinifera]
Length = 708
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+L M RG +V +T T +I ++G VN + F++M + P+V + +IN
Sbjct: 246 WLNAMVERGF--IVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALING 303
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G+ +A LLE+M G++ P+VYT+T LI CK G
Sbjct: 304 LCKQGSIKQAFELLEEMVRRGWK--PNVYTHTTLIDGLCKKG 343
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+G K FLK + R +G T T +I +E +N A RM++ P+
Sbjct: 342 KGWTEKAFRLFLKLV--RSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPN 399
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +I+ C+VGNF +A L++ M GF P++YTY +I CK G
Sbjct: 400 TNTYTTLIDGHCKVGNFVRAYELMDLMGKEGF--SPNIYTYNAIIDGLCKKG 449
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQME 231
T LI L ++G + +A M + +P+VY + +I+ LC+ G KA R L+ +
Sbjct: 298 TALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVR 357
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
G++ P+V+TYT +I+ YCK
Sbjct: 358 SDGYK--PNVHTYTAMINGYCK 377
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P++Y YN +I+ LC+ G+ ++A LL ++ + G + D TYTIL+S +C+
Sbjct: 433 PNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQ--ADGVTYTILMSVHCR 482
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ V + N +L F +M + PD+++Y +I+ CR ++ L E+
Sbjct: 472 TYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEA 531
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P TYT +I YC+YG
Sbjct: 532 VSLGL--IPTKKTYTSMICGYCRYG 554
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEAL 189
NEV + M + FA +K + + EM +G LV +T T+ C++ V GLV A
Sbjct: 154 NEVM-QCMVMNFAENGKLKEAVNMVVEMQNQG---LVPSTQTLNCVLDVAVGMGLVEIAE 209
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
F M Q PD ++ +++ A C +G +A L M GF D T T++I
Sbjct: 210 NMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGF--IVDNATCTLIID 267
Query: 250 SYCKYG 255
++C+ G
Sbjct: 268 AFCQKG 273
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
GN V+ ++ + M + G + T +I L ++G ++EA ++ + D
Sbjct: 414 GNFVRA-YELMDLMGKEGFSPNIYTYNA--IIDGLCKKGSLDEAYRLLNKVSVHGLQADG 470
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
Y ++++ CR + N++ +M GF PD+++YT LIS++C+
Sbjct: 471 VTYTILMSVHCRQADTNRSLVFFNKMLKVGF--TPDIHSYTTLISTFCR 517
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T T +I G + A+ F RM C PD Y +I+ LC+ + A
Sbjct: 535 GLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDA 594
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
R L + M G P T L YCK
Sbjct: 595 RNLYDAMMDKGL--SPCEVTRLTLAYEYCK 622
>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 694
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + + + D +KE+ RG V T T L+ L + +++A+A
Sbjct: 446 NTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVIT--YTSLLDGLCKNQNLDKAIA 503
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F +MK+ +P+ Y Y +I+ LC+ A+ L + + + G C DVYTY ++I
Sbjct: 504 LFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKG--CCIDVYTYNVMIGG 561
Query: 251 YCKYGM 256
CK GM
Sbjct: 562 LCKEGM 567
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 152 WDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+DF EM+ RG +++T ST+ C + G+ + A + M PDVY Y ++
Sbjct: 292 YDFYTEMNSRGIFPDVITYSTLICGFCLAGQ---LMGAFSLLNEMTLKNINPDVYTYTIL 348
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I+ALC+ G +A+ LL M G + P+V TY+ L+ YC G
Sbjct: 349 IDALCKEGKLKEAKNLLGVMTKEGVK--PNVVTYSTLMDGYCLVG 391
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L ++ LVNEA + M PDV Y+ +I C G A LL +M L
Sbjct: 278 IIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKN 337
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PDVYTYTILI + CK G
Sbjct: 338 IN--PDVYTYTILIDALCKEG 356
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+N+A +FY + F + +T + F + G + L EM+ + V T T
Sbjct: 288 VNEAYDFYTEMNSR-GIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYT 346
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ LI L +EG + EA M + +P+V Y+ +++ C VG + A+ + M
Sbjct: 347 I--LIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMV 404
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
P V +Y I+I+ CK
Sbjct: 405 QT--EVNPSVCSYNIMINGLCK 424
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVT---CLIKVLGEEGLVNEALATFYRMKQ 197
+ +K + L M++ G +VT ST+ CL+ G V+ A F+ M Q
Sbjct: 352 LCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLV------GEVHNAKQIFHAMVQ 405
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P V +YN++IN LC+ + ++A LL +M P+ TY LI CK G
Sbjct: 406 TEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNV--VPNTVTYNSLIDGLCKSG 461
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
+V++A++ F M R P + + ++ +L ++ +F A L +QME+ G PD+ T
Sbjct: 112 VVHDAVSQFNGMLLMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIE--PDLVT 169
Query: 244 YTILISSYCKYG 255
+ILI+ +C G
Sbjct: 170 LSILINCFCHLG 181
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+EA+ M P+ YN +I+ LC+ G A L++++ G P DV TY
Sbjct: 428 VDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQ--PADVITY 485
Query: 245 TILISSYCK 253
T L+ CK
Sbjct: 486 TSLLDGLCK 494
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 192 FYRMKQFRC-RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
RM + R RPDV YN +I+ LC+ N+A +M G PDV TY+ LI
Sbjct: 259 LLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIF--PDVITYSTLICG 316
Query: 251 YCKYG 255
+C G
Sbjct: 317 FCLAG 321
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T +I L +EG+++EALA +M+ C PD + ++I +L +KA
Sbjct: 547 GCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKA 606
Query: 224 RFLLEQMELPGF 235
LL +M G
Sbjct: 607 EKLLHEMIAKGL 618
>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
Length = 801
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ +KEM R+G + TST + +I L V +A F MK PDVY Y ++I
Sbjct: 273 FQLIKEMMRKGF--VPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 330
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++ C+ G +A++L E+M G C P V TYT LI +Y K
Sbjct: 331 DSFCKAGLIEQAQWLFEEMRSVG--CSPTVVTYTALIHAYLK 370
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + + +M++ G L + T T LI + ++G ++ A+ +M + C
Sbjct: 489 FCKAGKIDSAQEVFLQMTK--CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT 546
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V Y +I+ LCR+G KA LL ME G C P+V TYT LI K G
Sbjct: 547 PNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG--CSPNVVTYTALIDGLGKAG 598
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G + K L L M +G V T T LI LG+ G ++ +L F +M + C P+
Sbjct: 563 GESEKAL-KLLSLMEEKGCSPNVVTYTA--LIDGLGKAGKIDLSLDLFTQMSRKGCSPNY 619
Query: 205 YAYNVVINALCRVGNFNKARFLLEQME-------LPGFRCPPDVYTYTILIS 249
Y V+IN LC G +KAR LL +M+ L G+RC ++ + + S
Sbjct: 620 VTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIAS 671
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD Y+ VI LC KA L ++M++ G PDVYTYTILI S+CK G+
Sbjct: 286 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGV--TPDVYTYTILIDSFCKAGL 338
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 63/162 (38%), Gaps = 6/162 (3%)
Query: 96 VLGPAAYRNPQKVTLGINKATEFYHWVERFFH--FFHNEVTCKEMGIVFARGNNVKGLWD 153
VL N + G+ K + + ++ F + T ++ V+ +
Sbjct: 250 VLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFL 309
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+EM G V T T+ LI + GL+ +A F M+ C P V Y +I+A
Sbjct: 310 LFQEMKMVGVTPDVYTYTI--LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHA 367
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +A + +M G C P+ TY L+ CK G
Sbjct: 368 YLKAKQVPQANDIFHRMVDAG--CRPNDVTYGALVDGLCKAG 407
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W F +EM R G T T T LI + V +A F+RM CRP+ Y ++
Sbjct: 344 WLF-EEM--RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALV 400
Query: 212 NALCRVGNFNKARFLLEQMELPG--------FRC------PPDVYTYTILISSYCK 253
+ LC+ GN +KA + ++ F C P+V TY L+ CK
Sbjct: 401 DGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCK 456
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFR 199
FA +G W +M R + +L TV C +I L E +EA++ +RM+
Sbjct: 81 FAHALCKEGRWADALDMIEREDFKL---DTVLCTHMISGLMEASYFDEAMSFLHRMRCNS 137
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C P+V Y +++ + + ++ M G C P+ + L+ SYC
Sbjct: 138 CIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEG--CNPNPSLFNSLVHSYC 188
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + V+ A M C P+ Y+ +I+ C+ G + A+ + QM
Sbjct: 446 TYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 505
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G+ P V+TYT LI K G
Sbjct: 506 TKCGYL--PSVHTYTSLIDRMFKDG 528
>gi|302776386|ref|XP_002971363.1| hypothetical protein SELMODRAFT_451140 [Selaginella moellendorffii]
gi|300161345|gb|EFJ27961.1| hypothetical protein SELMODRAFT_451140 [Selaginella moellendorffii]
Length = 745
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+ A F++WVE+ + H+ +M + R ++ + + L M + + V+ T
Sbjct: 482 VTAALRFFYWVEKQPGYKHDSFVYTKMISLLGRHHHFSQVEELL--MKLQSSDIEVSIVT 539
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ +I L + A+ FY MK + +P+ Y VI+ L ++ +F++A + ++M
Sbjct: 540 MNSIIFTLSVSHNPDLAMKIFYWMKDLKVKPNTRTYTTVIDMLVKMRHFDRAMAIYQEML 599
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
G C PD +TYT+LI S + G
Sbjct: 600 DAG--CKPDAHTYTVLIQSLGREG 621
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T T +I +L + + A+A + M C+PD + Y V+I +L R G + A LLE
Sbjct: 572 TRTYTTVIDMLVKMRHFDRAMAIYQEMLDAGCKPDAHTYTVLIQSLGREGKIDAAEHLLE 631
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M L G C P+V YT LI+S YG
Sbjct: 632 KMPLNG--CKPNVVNYTSLINSLIHYG 656
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 4/143 (2%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
+ A F+ W++ + H E T + VF R +V G+ L +MS G G +
Sbjct: 162 DAAWGFFQWLKGVEGYRHTEHTYNSLIEVFGRVKDVTGIQKVLDDMSAYGCG--MNVVLF 219
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I ++ A+ + +M + C P+V Y ++++ L ++ F + + + M
Sbjct: 220 TTVIHWYSRADDIDRAVEMWNQMLKVGCLPNVVTYTMLMSLLTKLKRFRQVGEIFKDMVS 279
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C P+V TYT+LI G
Sbjct: 280 AG--CRPNVRTYTVLIQCLASSG 300
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ LG EG ++ A +M C+P+V Y +IN+L G + A + ++M
Sbjct: 609 TYTVLIQSLGREGKIDAAEHLLEKMPLNGCKPNVVNYTSLINSLIHYGRVSHALAVFKRM 668
Query: 231 ELPGFRCPPDVYTYTIL 247
+ G P+ TY+++
Sbjct: 669 QDEGVM--PNSITYSLM 683
>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 794
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 4/144 (2%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+++A EFY + H + +C + V + V+ EM R NGE V T
Sbjct: 117 VDRALEFYRTFIKIHHCVPDVFSCNSLLNVLVKHGKVEIACKVYDEMVDR-NGE-VDNYT 174
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
V ++K L +EG V + + C P++ YN +I+ C+ G+ +A L ++++
Sbjct: 175 VCIMVKGLCKEGKVEDGWKLIEKRWGRGCMPNIVFYNTLIDGYCKKGDTERANVLFKELK 234
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
+ GF P V TY +I+ +CK G
Sbjct: 235 MKGFL--PTVKTYGAIINGFCKKG 256
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
AL F M + C+P+V Y ++IN C G+ N+A +QM R P+V TYTIL
Sbjct: 541 ALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQM--LSLRLKPNVVTYTIL 598
Query: 248 ISSYCK 253
I +CK
Sbjct: 599 IGCFCK 604
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EMS RG V+ +I + G EA T M + C PD+ YN++I
Sbjct: 264 LLVEMSERGLD--VSIHIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITG 321
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C G +KA LLEQ G P+ +YT LI +YCK G
Sbjct: 322 SCSCGEVHKAEQLLEQAIKRGLL--PNKVSYTPLIHNYCKQG 361
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
D L +MS RG+ +LVT + + + V GE V+ AL +M + PD YNV++
Sbjct: 368 DLLIKMSERGHKPDLVTYAALIHGLIVAGE---VDVALTVRNKMVEKGVLPDANIYNVLM 424
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ LC+ G A+ LL +M PD + L+ + ++G
Sbjct: 425 SGLCKKGRLPAAKVLLAEM--LDQNVAPDAFITATLVDGFIRHG 466
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI G +N A TF +M R +P+V Y ++I C+ N KA EQM
Sbjct: 559 TYTLLINGFCLSGDINRAEKTFKQMLSLRLKPNVVTYTILIGCFCKGVNLTKACSFFEQM 618
Query: 231 ELPGFRCPPDVYTYTILISS 250
+ +C P+ TY L++
Sbjct: 619 LME--KCLPNDVTYNYLMNG 636
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK + G++ +AL F RM Q PD + Y+ +I+ ++ + + A + M + G
Sbjct: 493 MIKGYCKFGMMKDALLCFKRMIQGLHSPDEFTYSTIIDGYIKMNDLHGALRMFGLM-VKG 551
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+V TYT+LI+ +C G
Sbjct: 552 -ACKPNVVTYTLLINGFCLSG 571
>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Cucumis sativus]
Length = 728
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 129 FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188
+ + T K + + + R NV ++ EM RG +V +T+T +I E+ LVN A
Sbjct: 241 YPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGF--VVDNATLTLIITAFCEKSLVNRA 298
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+ F+++ + P++ Y+ +I+ LC+ G+ +A LLE+M G++ P+VYT+T LI
Sbjct: 299 VWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWK--PNVYTHTSLI 356
Query: 249 SSYCKYG 255
CK G
Sbjct: 357 HGLCKKG 363
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 6/145 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+N+A F+H V + N + M + +VK ++ L+EM + NG T
Sbjct: 295 VNRAVWFFHKVTKM-GLSPNLINYSSMISGLCKRGSVKQAFELLEEMVK--NGWKPNVYT 351
Query: 172 VTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L ++G A F ++ + +P+V+ Y +I+ C+ ++A L E+M
Sbjct: 352 HTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERM 411
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G P+ TYT LI +CK G
Sbjct: 412 KEQGL--VPNTNTYTTLIDGHCKAG 434
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I +E ++ A F RMK+ P+ Y +I+ C+ GNF+KA L+E M
Sbjct: 387 TYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELM 446
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF P+ TY ++ CK G
Sbjct: 447 SNEGFF--PNTCTYNSIVDGLCKRG 469
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189
H V C M VFA +K D + +M R G ++TT + +I V E LV A
Sbjct: 174 HEVVEC--MVGVFAEIGKLKEAVDMILDM--RNQGLVLTTRVMNRIILVAAEMRLVEYAG 229
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILI 248
F M PD Y +I CR GN +A R++ E ME GF D T T++I
Sbjct: 230 NVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMME-RGF--VVDNATLTLII 286
Query: 249 SSYCK 253
+++C+
Sbjct: 287 TAFCE 291
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ N ++ ++ MS G T T ++ L + G EA Q + D
Sbjct: 432 KAGNFSKAYELMELMSNEGF--FPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEAD 489
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
Y ++I+ C+ + N+A L +M GF+ PD++ YT LI+++C+ M
Sbjct: 490 GVTYTILISEQCKRADMNQALVFLNKMFKVGFQ--PDIHLYTTLIAAFCRQNM 540
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F R N +K E+ + G T T T +I E V+ A+ F +M C
Sbjct: 534 AFCRQNMMKDSEKLFDEVIKLGLAP--TKETYTSMICGYCREKKVSLAVKFFQKMSDHGC 591
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD +Y +I+ LC+ ++AR L + M G P T L YCK
Sbjct: 592 APDSISYGALISGLCKESRLDEARQLYDTMIDKGL--SPCEVTRVTLTYEYCK 642
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + +N+AL +M + +PD++ Y +I A CR + L +++
Sbjct: 492 TYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEV 551
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G P TYT +I YC+
Sbjct: 552 IKLGL--APTKETYTSMICGYCR 572
>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
Length = 834
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F+HW+++ F H+ T M + R + L +M R +G T T
Sbjct: 321 ALGFFHWLKQLPGFKHDGYTYTTMVGILGRAKQFVAINKLLDQMVR--DGCQPTVVTYNR 378
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G +N+A+ F +M++ C PD Y +I+ + G N A + ++M+ G
Sbjct: 379 LIHSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAG 438
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD +TY+++I+ K G
Sbjct: 439 LS--PDTFTYSVMINCLGKAG 457
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 150 GLWDFLKEMSRR--GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G +F EM +R G T T + +I LG+ G + A F M + C P++ Y
Sbjct: 422 GFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTY 481
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
N++I + N+ A L M+ GF PD TY+I++
Sbjct: 482 NIMIALQAKARNYQNALKLYRDMQNAGFE--PDKVTYSIVM 520
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT M + A+ N + ++M G + VT S V ++VLG G ++EA
Sbjct: 477 NLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVTYSIV---MEVLGHSGYLDEAE 533
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
A F MK+ PD Y ++++ + GN KA + M G C P+V T L+S
Sbjct: 534 AIFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWEWYQAMLHAGL-C-PNVPTCNSLLS 591
Query: 250 SYCK 253
++ +
Sbjct: 592 AFLR 595
>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
Length = 708
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
V C MG V +L M RG +V +T T +I ++G VN + F
Sbjct: 232 VACCNMGRVLEAEK-------WLNAMVERGF--IVDNATCTLIIDAFCQKGYVNRVVGYF 282
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
++M + P+V + +IN LC+ G+ +A LLE+M G++ P+VYT+T LI C
Sbjct: 283 WKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWK--PNVYTHTTLIDGLC 340
Query: 253 KYG 255
K G
Sbjct: 341 KKG 343
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+G K FLK + R +G T T +I +E +N A RM++ P+
Sbjct: 342 KGWTEKAFRLFLKLV--RSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPN 399
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +I+ C+VGNF +A L++ M GF P++YTY +I CK G
Sbjct: 400 TNTYTTLIDGHCKVGNFVRAYELMDLMGKEGF--SPNIYTYNAIIDGLCKKG 449
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQME 231
T LI L ++G + +A M + +P+VY + +I+ LC+ G KA R L+ +
Sbjct: 298 TALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVR 357
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
G++ P+V+TYT +I+ YCK
Sbjct: 358 SDGYK--PNVHTYTAMINGYCK 377
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P++Y YN +I+ LC+ G+ ++A LL ++ + G + D TYTIL+S +C+
Sbjct: 433 PNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQ--ADGVTYTILMSVHCR 482
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ V + N +L F +M + PD+++Y +I+ CR ++ L E+
Sbjct: 472 TYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEA 531
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P TYT +I YC+YG
Sbjct: 532 VSLGL--IPTKKTYTSMICGYCRYG 554
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
NEV + M + FA +K + + EM + G + +T T+ C++ V GLV A
Sbjct: 154 NEVM-QCMVMNFAENGKLKEAVNMVVEM--QNQGLVXSTQTLNCVLDVAVGMGLVEIAEN 210
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F M Q PD ++ +++ A C +G +A L M GF D T T++I +
Sbjct: 211 MFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGF--IVDNATCTLIIDA 268
Query: 251 YCKYG 255
+C+ G
Sbjct: 269 FCQKG 273
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L ++G ++EA ++ + D Y ++++ CR + N++ +M
Sbjct: 437 TYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKM 496
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
GF PD+++YT LIS +C+
Sbjct: 497 LKVGF--TPDIHSYTTLISXFCR 517
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T T +I G + A+ F RM C PD Y +I+ LC+ + A
Sbjct: 535 GLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDA 594
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
R L + M G P T L YCK
Sbjct: 595 RNLYDAMMDKGL--SPCEVTRLTLAYEYCK 622
>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
Length = 764
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
F + V + ++EM ++G +T + T CL+ L + +NEAL F MK +
Sbjct: 560 FGKVGRVDEAYLVMEEMMQKG----LTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLK 615
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+ Y ++IN LC+V FNKA ++M+ G + P+ TYT +IS K G
Sbjct: 616 CTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLK--PNTITYTAMISGLAKSG 669
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M VF G KG F +E+ RG L T + + LI L + G E +Y MK
Sbjct: 417 MDCVFKAGETEKGRALF-EEIKARGF--LPDTRSYSILIHSLVKAGFARETYELYYAMKD 473
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C D AYN VI+ C+ G NKA LLE+M+ G P V TY ++ K
Sbjct: 474 QGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHH--PTVVTYGSVVDGLAK 527
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V W F EM + NG + T T ++ VL + ++EA+ F +M+Q R
Sbjct: 141 FGKVGKVDMAWKFFHEM--KANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQV 198
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P YAYN +I G F++A LLE+ G C P V Y +++ K G
Sbjct: 199 PCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKG--CIPSVVAYNCILTCLGKKG 250
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 160 RRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
+R G + + C++ LG++G ++AL F MK+ P++ YN++I LC+ GN
Sbjct: 227 QRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKR-DAMPNLPTYNIIIGMLCKAGN 285
Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A + + M+ G P+V T I+I CK
Sbjct: 286 VEAAFKVRDAMKEAGLF--PNVRTINIMIDRLCK 317
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 14/143 (9%)
Query: 122 VERFFHFFH---------NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
V+ + FFH ++VT M V + N + + ++M + N ++
Sbjct: 147 VDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQ--NRQVPCAYAY 204
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+I G G +EA + R + C P V AYN ++ L + G +KA + E+M+
Sbjct: 205 NTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKR 264
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
P++ TY I+I CK G
Sbjct: 265 DAM---PNLPTYNIIIGMLCKAG 284
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ NG + + LI G+ G V+EA M Q P+VY +N +++ L +
Sbjct: 542 KSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEI 601
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N+A + M+ +C P+ TY ILI+ CK
Sbjct: 602 NEALVCFQSMK--DLKCTPNQITYCILINGLCK 632
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 150 GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
L++ ++E+ N L+TT LI+V EG V+ AL+ MK D+ YNV
Sbjct: 82 ALFNQMQELGYEVNVHLLTT-----LIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNV 136
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
I+ +VG + A +M+ G PD TYT ++ CK
Sbjct: 137 CIDCFGKVGKVDMAWKFFHEMKANGL--VPDDVTYTSMMGVLCK 178
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Query: 141 VFARGNNVKGLWDFLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
VF+R V L EM S + ++V + I G+ G V+ A F+ MK
Sbjct: 105 VFSREGRVDAALSLLDEMKSNTFDADIVLYNVC---IDCFGKVGKVDMAWKFFHEMKANG 161
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y ++ LC+ ++A + EQME R P Y Y +I Y G
Sbjct: 162 LVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQN--RQVPCAYAYNTMIMGYGSAG 215
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+ M + C PD+ N ++ + + G K R L E+++ GF PD +Y+ILI S
Sbjct: 398 YKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGF--LPDTRSYSILIHSL 455
Query: 252 CKYG 255
K G
Sbjct: 456 VKAG 459
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R N L L EMS G G T T L+ + + EA M+ F+ RP
Sbjct: 3 RTRNFDYLEQILGEMSIAGFGP--TNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPA 60
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
AY +I AL VG ++ L QM+ G+ +V+ T LI + + G
Sbjct: 61 FSAYTTLIGALSEVGESDRMLALFNQMQELGYEV--NVHLLTTLIRVFSREG 110
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTT--STVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F + V + L+EM G+ V T S V L K+ ++EA F K
Sbjct: 490 FCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKI----DRLDEAYMLFEEAKSNG 545
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ Y+ +I+ +VG ++A ++E+M G P+VYT+ L+ K
Sbjct: 546 IELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGL--TPNVYTWNCLLDGLVK 597
>gi|413918448|gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
Length = 414
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK + G + +AL RM +F C PD N++++ LCRV NK +L +++ G
Sbjct: 88 VIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILVDGLCRVKQVNKGHEVLRRLQRDG 147
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+V TYT +IS YCK G
Sbjct: 148 V-CMPNVVTYTSVISGYCKAG 167
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRC-RPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L+ L G +A+A F Q PDV+++NVVI +CRVGN KA L+E+M
Sbjct: 52 LLNTLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERM--T 109
Query: 234 GFRCPPDVYTYTILISSYCK 253
F C PD T IL+ C+
Sbjct: 110 EFGCSPDTITQNILVDGLCR 129
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 88 DNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN 147
D I N+LV G + +NK E ++R N VT + + +
Sbjct: 116 DTITQNILVDGLCRVKQ-------VNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGR 168
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
+K + +M + G T T LI G+ + A+ ++++ C PDV +
Sbjct: 169 MKDAFSVYNDMLQSGTRP--NTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTF 226
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
N +I+ CR G + A + ME+ P+VYT++I+I S C
Sbjct: 227 NSLIDGYCRCGQLDDAMRIW--MEMGQHHIQPNVYTFSIIIHSLC 269
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P + YN +I+ LC+ G ++A ++ ME G C PD YTYTILI +C G
Sbjct: 292 PQTFIYNPIIDILCKGGKVDEANLIVTDMEEKG--CHPDKYTYTILIIGHCMKG 343
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I + G + +A + + M Q RP+ YNV+IN + + A + Q+
Sbjct: 155 TYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQL 214
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L CPPDV T+ LI YC+ G
Sbjct: 215 IL--HSCPPDVVTFNSLIDGYCRCG 237
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I +L + G V+EA M++ C PD Y Y ++I C G +A L +M G
Sbjct: 300 IIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAVTLFHKMVETG 359
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
C PD T IS K GM
Sbjct: 360 --CRPDNITINSFISCVLKAGM 379
>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI G+ GL++E + F +MK C PDV YN +IN C+ KA L +M
Sbjct: 93 TYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEM 152
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
+ G + P+V TY+ I ++CK GM
Sbjct: 153 KANGLK--PNVVTYSTFIDAFCKEGM 176
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
++FL EM + NG T + I +EG++ EA+ F M++ P+ + Y +I
Sbjct: 146 FEFLHEM--KANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLI 203
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A C+ GN +A L+E++ G + +V TYT L+ C+ G
Sbjct: 204 DANCKAGNLAEALKLVEEILQAGIKL--NVVTYTALLDGLCEEG 245
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
F K+M G V T + +I L +EG + A + F +MK+ PD+ YN +I+
Sbjct: 43 FFKDMGAAGIKRSVFTYNI--MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDG 100
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
++G ++ + EQM+ C PDV TY LI+ +CK+
Sbjct: 101 HGKLGLLDECICIFEQMK--DADCDPDVITYNALINCFCKF 139
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F M + V+ YN++I+ LC+ G+ AR L QM+ GF PD+ TY LI +
Sbjct: 44 FKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGF--TPDIVTYNSLIDGH 101
Query: 252 CKYGM 256
K G+
Sbjct: 102 GKLGL 106
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI + G + EAL RM + D++AY +I L G KAR LL++M
Sbjct: 398 TALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEM-- 455
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G PD Y LI Y G
Sbjct: 456 IGKGVLPDEVVYMCLIKKYYALG 478
>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
Length = 2021
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T T LI+ L EG + EAL F +M +P+V Y +IN LC+VGN + A LL
Sbjct: 136 TTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRS 195
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
ME C PDV YT +I S CK
Sbjct: 196 MEQG--NCQPDVVIYTSIIDSLCK 217
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G++ T + L+ L + + EA+A ++ PD+ YN++I+ +CR G A
Sbjct: 410 GQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAA 469
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
R L + G P V+TY I+I CK G+
Sbjct: 470 RDLFSNLSSKGLH--PSVWTYNIMIHGLCKRGL 500
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + G + A+ M+Q C+PDV Y +I++LC+ +A L QM
Sbjct: 172 TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 231
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
G PD++TYT L+ + C
Sbjct: 232 VGQGI--SPDIFTYTSLVHALC 251
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++V STV + L +EG V EA M Q PDV Y +++ C ++A
Sbjct: 274 DVVIFSTV---VDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAV 330
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ + M GF PDV +YT LI+ YCK
Sbjct: 331 KVFDMMVRKGF--APDVISYTTLINGYCK 357
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T L+ L G + +A+A F+ M PD+ Y++++++LC+ + +A LL+
Sbjct: 380 TKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLK 439
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+E PD+ Y I+I C+ G
Sbjct: 440 AIEASNLN--PDIQVYNIIIDGMCRAG 464
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+ F M + PD YN ++ LC VG A L +M G PD+ TY
Sbjct: 361 IDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQM--PDLVTY 418
Query: 245 TILISSYCK 253
+IL+ S CK
Sbjct: 419 SILLDSLCK 427
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+ F M + PDV +Y +IN C++ +KA +L E+M + PD TY
Sbjct: 326 MDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEW--IPDTKTY 383
Query: 245 TILISSYCKYG 255
L+ C G
Sbjct: 384 NTLMYGLCHVG 394
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L ++ V EA F +M PD++ Y +++ALC + + LL QM
Sbjct: 209 TSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQM-- 266
Query: 233 PGFRCPPDVYTYTILISSYCKYGMQT 258
+ PDV ++ ++ + CK G T
Sbjct: 267 VNSKILPDVVIFSTVVDALCKEGKVT 292
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I + G + A F + P V+ YN++I+ LC+ G N+A L ME+ G
Sbjct: 456 IIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLF--MEMDG 513
Query: 235 FRCPPDVYTYTILISSYCK 253
C PD TY + + +
Sbjct: 514 NDCSPDGCTYNTIARGFLQ 532
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
PDV ++ V++ALC+ G +A +++ M G PDV TYT L+ +C
Sbjct: 273 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVE--PDVVTYTTLMDGHC 321
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++AL++F R+ P + + ++ ++ ++ +++ L QM+ F PP+VYT
Sbjct: 46 LDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMD--SFGVPPNVYTL 103
Query: 245 TILISSYC 252
ILI+S+C
Sbjct: 104 NILINSFC 111
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+ LI V A + ++ + +PD + +I LC G +A L ++M
Sbjct: 102 TLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKM 161
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF+ P+V TY LI+ CK G
Sbjct: 162 IDEGFQ--PNVVTYGTLINGLCKVG 184
Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 2/111 (1%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R ++ D +S +G V T + +I L + GL+NEA F M C PD
Sbjct: 462 RAGELEAARDLFSNLSSKGLHPSVWTYNI--MIHGLCKRGLLNEANKLFMEMDGNDCSPD 519
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
YN + + +A LLE+M GF ++L +Y
Sbjct: 520 GCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADSCFLMLSVLSEDDRRY 570
>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Vitis vinifera]
Length = 755
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI G+ GL++E + F +MK C PDV YN +IN C+ KA L +M
Sbjct: 292 TYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEM 351
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
+ G + P+V TY+ I ++CK GM
Sbjct: 352 KANGLK--PNVVTYSTFIDAFCKEGM 375
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC-LIKVLGEEGLVNEALATFYRMK 196
M F G + L L+EM G L+ T C LI L + GLV EA+ F RM
Sbjct: 542 MDAYFKSGQATEAL-TLLEEMLDLG---LIATEVTYCALIDGLCKSGLVQEAMHHFGRMS 597
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +P+V Y +++ LC+ F A+ L ++M G PD YT LI K+G
Sbjct: 598 EIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMM--PDKIAYTALIDGNMKHG 654
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
++FL EM + NG T + I +EG++ EA+ F M++ P+ + Y +I
Sbjct: 345 FEFLHEM--KANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLI 402
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A C+ GN +A L+E++ G + +V TYT L+ C+ G
Sbjct: 403 DANCKAGNLAEALKLVEEILQAGIKL--NVVTYTALLDGLCEEG 444
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
F K+M G V T + +I L +EG + A + F +MK+ PD+ YN +I+
Sbjct: 242 FFKDMGAAGIKRSVFTYNI--MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDG 299
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
++G ++ + EQM+ C PDV TY LI+ +CK+
Sbjct: 300 HGKLGLLDECICIFEQMK--DADCDPDVITYNALINCFCKF 338
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 37/117 (31%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRP-------------------------------- 202
L L E G++ EA F +M++FR P
Sbjct: 191 LFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAG 250
Query: 203 ---DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
V+ YN++I+ LC+ G+ AR L QM+ GF PD+ TY LI + K G+
Sbjct: 251 IKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGF--TPDIVTYNSLIDGHGKLGL 305
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI + G + EAL RM + D++AY +I L G KAR LL++M
Sbjct: 644 TALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIG 703
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G PD Y LI Y G
Sbjct: 704 KGVL--PDEVVYMCLIKKYYALG 724
>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Glycine max]
Length = 1476
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
KA E + +E FF + VT + F+R N + + D +EM +RG G+ T
Sbjct: 374 KAEELFKELESK-GFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQ--DEMTYN 430
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
+I + G++G ++A+ + MK PD Y V+I++L + +A ++ +M
Sbjct: 431 TIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDA 490
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G + P ++TY+ LI +Y K G
Sbjct: 491 GVK--PTLHTYSALICAYAKAG 510
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L E+ R G +++T +T LI E + EA+A F M+ RC+PD++ YN +I+
Sbjct: 308 LLNEVRRSGIRPDIITYNT---LISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMIS 364
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R KA L +++E GF PD TY L+ ++ + G
Sbjct: 365 VYGRCARARKAEELFKELESKGFF--PDAVTYNSLLYAFSREG 405
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLV--NEALATFYR 194
MG V+AR + + L M RG +LV+ +T LI + G + N AL
Sbjct: 256 MG-VYARNGRFSKVKELLDLMRERGCVPDLVSFNT---LINARMKSGAMEPNLALQLLNE 311
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+++ RPD+ YN +I+A R N +A + ME RC PD++TY +IS Y
Sbjct: 312 VRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDME--SHRCQPDLWTYNAMISVY 366
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T + LI + G EA TF M++ +PD AY+V+++ R KA L
Sbjct: 495 TLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLY 554
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
+M GF PD Y +++ + + M
Sbjct: 555 HEMIREGF--TPDNGLYEVMMHALVRENM 581
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF--NKARF 225
T ++ V G ++ M++ C PD+ ++N +INA + G N A
Sbjct: 248 TVQVYNAMMGVYARNGRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAMEPNLALQ 307
Query: 226 LLEQMELPGFRCPPDVYTYTILISS 250
LL ++ G R PD+ TY LIS+
Sbjct: 308 LLNEVRRSGIR--PDIITYNTLISA 330
>gi|357167657|ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Brachypodium distachyon]
Length = 560
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
IK + + G V +AL RM +F C PD N+++ LCRV ++ R +L +++ G
Sbjct: 235 IKGVCQVGDVQKALELVERMAEFGCSPDTVTNNILVGGLCRVKEVSRGREVLRRLQRDGV 294
Query: 236 RCPPDVYTYTILISSYCKYG 255
C P+V TYT +IS YCK G
Sbjct: 295 -CMPNVVTYTSVISGYCKSG 313
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I + G + +A+A + M P+ YNV+IN + GN A + +QM
Sbjct: 301 TYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQM 360
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L RCPPDV T++ LI YC+ G
Sbjct: 361 IL--RRCPPDVVTFSTLIDGYCRCG 383
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 11/166 (6%)
Query: 88 DNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN 147
D + NN+LV G + +++ E ++R N VT + + +
Sbjct: 262 DTVTNNILVGGLCRVKE-------VSRGREVLRRLQRDGVCMPNVVTYTSVISGYCKSGR 314
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
++ +M G G T LI G+ G + A+A + +M RC PDV +
Sbjct: 315 MEDAMAVYNDMI--GCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQMILRRCPPDVVTF 372
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ +I+ CR G + A + E+ ++ P+ +T++I+I S+CK
Sbjct: 373 STLIDGYCRCGQLDDA--MRTWTEMSQYQIQPNAHTFSIIILSFCK 416
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 183 GLVNEALATFYRMKQFRC-RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
G V +A+A F Q PDV+++NV I +C+VG+ KA L+E+M F C PD
Sbjct: 206 GRVQDAVALFEGWIQGGAYSPDVWSFNVAIKGVCQVGDVQKALELVERMA--EFGCSPDT 263
Query: 242 YTYTILISSYCK 253
T IL+ C+
Sbjct: 264 VTNNILVGGLCR 275
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQ 197
+ F + N FLKE++ R + + C +I VL + G V+EA M+
Sbjct: 412 LSFCKQNRSAEALRFLKELNMRTD---IAPRAFICNPVIDVLCKGGKVDEANLILMEMEG 468
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
CRPD Y Y ++I C G ++A +M G C PD T I K GM
Sbjct: 469 KGCRPDKYTYTILIIGHCMKGRISEAITFFNKMVDTG--CSPDSITVNSFIGCLLKAGMP 526
Query: 258 T 258
+
Sbjct: 527 S 527
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
+R + L+D + + S G ++ L G ++ A A + QF C
Sbjct: 135 SRHTDALKLFDQMTDQS----GHFPNARFLSFLAGSCANAGFLDAAAALLSKAPQFGCCV 190
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ YAYN ++N+ G A L E + G PDV+++ + I C+ G
Sbjct: 191 EAYAYNKLMNSFIGCGRVQDAVALFEGW-IQGGAYSPDVWSFNVAIKGVCQVG 242
>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 744
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T T LI+ L EG + EAL F +M +P+V Y +IN LC+VGN + A LL
Sbjct: 127 TTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRS 186
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
ME C PDV YT +I S CK
Sbjct: 187 MEQG--NCQPDVVIYTSIIDSLCK 208
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
EM RG ++ T + L+ L + + EA+A ++ PD+ YN++I+
Sbjct: 393 LFHEMVARG--QMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDG 450
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+CR G AR L + G P V+TY I+I CK G+
Sbjct: 451 MCRAGELEAARDLFSNLSSKGLH--PSVWTYNIMIHGLCKRGL 491
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + G + A+ M+Q C+PDV Y +I++LC+ +A L QM
Sbjct: 163 TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 222
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
G PD++TYT L+ + C
Sbjct: 223 VGQGI--SPDIFTYTSLVHALC 242
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++V STV + L +EG V EA M Q PDV Y +++ C ++A
Sbjct: 265 DVVIFSTV---VDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAV 321
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ + M GF PDV +YT LI+ YCK
Sbjct: 322 KVFDMMVRKGF--APDVISYTTLINGYCK 348
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T L+ L G + +A+A F+ M PD+ Y++++++LC+ + +A LL+
Sbjct: 371 TKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLK 430
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+E PD+ Y I+I C+ G
Sbjct: 431 AIEASNLN--PDIQVYNIIIDGMCRAG 455
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+ F M + PD YN +++ LC VG A L +M G PD+ TY
Sbjct: 352 IDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQM--PDLVTY 409
Query: 245 TILISSYCK 253
+IL+ S CK
Sbjct: 410 SILLDSLCK 418
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+ CKE + A + + M +RG V T T L E ++EA+
Sbjct: 274 DALCKEGKVTEAH--------EIVDMMIQRGVEPDVVTYTTLMDGHCLQSE--MDEAVKV 323
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F M + PDV +Y +IN C++ +KA +L E+M + PD TY L+
Sbjct: 324 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEW--IPDTKTYNTLMHGL 381
Query: 252 CKYG 255
C G
Sbjct: 382 CHVG 385
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L ++ V EA F +M PD++ Y +++ALC + + LL QM
Sbjct: 200 TSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQM-- 257
Query: 233 PGFRCPPDVYTYTILISSYCKYGMQT 258
+ PDV ++ ++ + CK G T
Sbjct: 258 VNSKILPDVVIFSTVVDALCKEGKVT 283
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R ++ D +S +G V T + +I L + GL+NEA F M C PD
Sbjct: 453 RAGELEAARDLFSNLSSKGLHPSVWTYNI--MIHGLCKRGLLNEANKLFMEMDGNDCSPD 510
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
YN + + +A LLE+M GF DV T T+L+ G+
Sbjct: 511 GCTYNTIARGFLQNNETLRAIQLLEEMLARGF--SADVSTTTLLVEMLSDDGLD 562
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+M + PDV ++ V++ALC+ G +A +++ M G PDV TYT L+ +C
Sbjct: 256 QMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVE--PDVVTYTTLMDGHC 312
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++AL++F R+ P + + ++ ++ ++ +++ L QM+ F PP+VYT
Sbjct: 37 LDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMD--SFGVPPNVYTL 94
Query: 245 TILISSYC 252
ILI+S+C
Sbjct: 95 NILINSFC 102
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+ LI V A + ++ + +PD + +I LC G +A L ++M
Sbjct: 93 TLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKM 152
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF+ P+V TY LI+ CK G
Sbjct: 153 IDEGFQ--PNVVTYGTLINGLCKVG 175
>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
Length = 585
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T LIK L E ++EA F RM++ C P+V Y +I LCR GN N A
Sbjct: 156 GYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLA 215
Query: 224 RFLLEQMELPG-----FRCPPDVYTYTILISSYCKYG 255
L ++M L G C P++++Y I+I CK G
Sbjct: 216 LKLHQEM-LNGTSPYAINCKPNIFSYNIIIDELCKIG 251
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQ------FRCRPDVYAYNVVINALCRVGNFNKAR 224
T LIK L G +N AL M C+P++++YN++I+ LC++G + +A+
Sbjct: 198 TYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAK 257
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L +M G R PDV T++ LI + CK GM
Sbjct: 258 RLFNEMVDQGVR--PDVVTFSALIDTLCKEGM 287
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L +EG+V EA M PD++ + +I C VG+ + A+ L M
Sbjct: 274 TFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSM 333
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G+ PDV +YT+LI YCK
Sbjct: 334 PSKGYE--PDVISYTVLIYGYCK 354
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 86 EADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARG 145
E D I+ VL+ G T + +A + Y+ + R + + C + +F G
Sbjct: 339 EPDVISYTVLIYGYCK-------TFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAG 391
Query: 146 --NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ K L+ +K + N + + + L + G + EA+ F +K + + D
Sbjct: 392 KVGDAKKLFGVVKPHAVPKNLYICSV-----FLDGLCKNGCLFEAMELFNELKSYNMKLD 446
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ ++N +I+ LC+ A L E++ G + PDV TY I+I+ +CK G
Sbjct: 447 IESFNCLIDGLCKARKLETAWELFEKLSQEGLQ--PDVVTYCIMINGFCKNG 496
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
+ + CLI L + + A F ++ Q +PDV Y ++IN C+ G + A L
Sbjct: 445 LDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANIL 504
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCK 253
+ ME G C P++ TY+ L+ + K
Sbjct: 505 FQMMEENG--CTPNLLTYSALLHGFYK 529
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L + G EA F M RPDV ++ +I+ LC+ G +A+ LE M L G
Sbjct: 243 IIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRG 302
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD++T+T LI +C G
Sbjct: 303 I--VPDLFTFTSLIEGFCLVG 321
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+ LI L V E L+ + + PDV Y +I LC ++A L +M
Sbjct: 128 TLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRM 187
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G C P+V TY LI C+ G
Sbjct: 188 QKLG--CWPNVVTYGTLIKGLCRTG 210
>gi|308082018|ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea mays]
gi|238014984|gb|ACR38527.1| unknown [Zea mays]
gi|414872746|tpg|DAA51303.1| TPA: hypothetical protein ZEAMMB73_971718 [Zea mays]
Length = 623
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM +G + T T+ ++ LG+ G EAL TF ++KQ C D YN +I
Sbjct: 358 ILDEMHTKGCTPNIITYTI--VMHALGKAGRTQEALDTFDKVKQDGCALDASFYNCLIYI 415
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LCR G A F++E+M G P++ T+ LIS+ C + +
Sbjct: 416 LCRAGRLQDANFVVEEMHRTGI--SPNLTTFNTLISAACDHSL 456
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G LV+ +T+T +++ L ++A+ F++M +F D A NV+++ LC+ + +A
Sbjct: 227 GGLVSLATMTKVMRRLCGANRWSDAIDAFHKMDRFGVAKDTKAMNVLLDTLCKERSVKRA 286
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
R + ++ PPD ++ L+ +CK M
Sbjct: 287 RGAFQALK---GTIPPDESSFNTLVHGWCKARM 316
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D +M R G + T + L+ L +E V A F +K PD ++N +++
Sbjct: 253 DAFHKMDRFGVAK--DTKAMNVLLDTLCKERSVKRARGAFQALKG-TIPPDESSFNTLVH 309
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C+ +AR +++ME GF P V TYT LI +YC
Sbjct: 310 GWCKARMLKEARETMKEMERHGF--SPSVTTYTCLIEAYC 347
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
++EM R G +TT LI + L AL +M++ C PD+ Y ++
Sbjct: 429 VEEMHRTGISPNLTTFNT--LISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLC 486
Query: 215 CRVGNFNKARFLLEQMELPGFR--CPPDVYTYTILISSYCKYGMQT 258
CR FL+ M FR PD TYT+L+ C+ G T
Sbjct: 487 CRRKWVKTLLFLICHM----FRKDITPDFSTYTLLVCWLCRNGRLT 528
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
++ EA T M++ P V Y +I A C +F +L++M G C P++ T
Sbjct: 316 MLKEARETMKEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKG--CTPNIIT 373
Query: 244 YTILISSYCKYG 255
YTI++ + K G
Sbjct: 374 YTIVMHALGKAG 385
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G + S CLI +L G + +A M + P++ +N +I+A C
Sbjct: 400 DGCALDASFYNCLIYILCRAGRLQDANFVVEEMHRTGISPNLTTFNTLISAACDHSLAEN 459
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A LL QME C PD+ TYT L+ C+
Sbjct: 460 ALKLLVQMEEQS--CNPDIKTYTPLLKLCCR 488
>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 641
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 110/256 (42%), Gaps = 33/256 (12%)
Query: 2 IVSKPLNSNHTCLVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQ 61
++S + N T P+ LK P ++ + + + F+++ V V + + +F +
Sbjct: 36 LISSQTSPNGTTQRGGFGPIHLKTTPHES----AHDRDADEFSVD-VEKVYRILRKFHTR 90
Query: 62 SPRS--IGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFY 119
P+ +++G R+ L +R+L + D G YR F+
Sbjct: 91 VPKLELALQESGVIMRSGLPERVLSRCGDA--------GNLGYR--------------FF 128
Query: 120 HWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVL 179
W + + H+ K M + +W ++EM R+ N ++T L++
Sbjct: 129 VWASKQPGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEM-RKENPYMLTPEVFIVLMRRF 187
Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
+V +A+ M ++ C PD Y + +++ALC+ G+ +A L E M + R P
Sbjct: 188 ASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRV---RFNP 244
Query: 240 DVYTYTILISSYCKYG 255
++ +T L+ +C+ G
Sbjct: 245 NLRHFTSLLYGWCREG 260
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ + G + +A MK+ C P+ ++ ++I + C+ ++A + +M+ G
Sbjct: 287 LLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSG 346
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C DV TYT LIS +CK+G
Sbjct: 347 --CEADVVTYTTLISGFCKWG 365
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 35/147 (23%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+A+ ++ +D L EM + G ++ T LI+ + ++EA+ F M+ C
Sbjct: 291 YAQAGKMRDAFDLLAEMKKVNCGP--NAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCE 348
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQM------------------------------- 230
DV Y +I+ C+ GN +KA +L+ M
Sbjct: 349 ADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMEL 408
Query: 231 --ELPGFRCPPDVYTYTILISSYCKYG 255
E+ C PD+ Y +I CK G
Sbjct: 409 IEEMRKIGCVPDLNIYNTMIRLVCKLG 435
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + N ++ L +M ++G+ + + C++ ++ + E + M++ C
Sbjct: 361 FCKWGNTDKAYEILDDMIQKGHDP--SQLSYLCIMMAHEKKEELEECMELIEEMRKIGCV 418
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ YN +I +C++G+ +A L +M+ G P + TY +++ + G
Sbjct: 419 PDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLN--PGLDTYILMVHGFLSQG 470
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ EG + EA ++K+ PD+ YN ++ + G A LL +M+
Sbjct: 250 TSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMK- 308
Query: 233 PGFRCPPDVYTYTILISSYCK 253
C P+ ++TILI S+CK
Sbjct: 309 -KVNCGPNAASFTILIQSFCK 328
>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
Length = 502
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV---TCLIKVLGEEGLVNEALATFYRMKQF 198
F R ++ WDF +M +RG+ + V T ++ LG G +++A F M +
Sbjct: 255 FFRSGQLQHAWDFFLQMKKRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSRE 314
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P + YN +I C+ GN A + + M G+ P+V TYT+LI C G
Sbjct: 315 GCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGY--IPNVVTYTVLIRGLCHAG 369
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+VTCK+ NV+ +M R+G V T TV LI+ L G ++ A+
Sbjct: 328 QVTCKK--------GNVEDAVAVFDDMIRKGYIPNVVTYTV--LIRGLCHAGKIDRAMKL 377
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+MK+ C P+V YNV+I L G+ KA L E M G C P+ TY I+IS+
Sbjct: 378 LDKMKREGCEPNVQTYNVLIGYLFEEGDIEKALHLFETMS-KGEECLPNQDTYNIIISA 435
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 11/132 (8%)
Query: 131 NEVTCKEMGIVFA---RGNNVKGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEG 183
N+ CK + + G V G D EMSR G + +T LI+V ++G
Sbjct: 277 NDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGCTP--SIATYNALIQVTCKKG 334
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
V +A+A F M + P+V Y V+I LC G ++A LL++M+ G C P+V T
Sbjct: 335 NVEDAVAVFDDMIRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREG--CEPNVQT 392
Query: 244 YTILISSYCKYG 255
Y +LI + G
Sbjct: 393 YNVLIGYLFEEG 404
>gi|115446101|ref|NP_001046830.1| Os02g0470000 [Oryza sativa Japonica Group]
gi|47497415|dbj|BAD19472.1| putative PPR protein [Oryza sativa Japonica Group]
gi|47497530|dbj|BAD19582.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113536361|dbj|BAF08744.1| Os02g0470000 [Oryza sativa Japonica Group]
Length = 649
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 14/155 (9%)
Query: 108 VTLGINKATEFYHWVERFFHFFHNEVTCKEMGI-----VFARGNNVKGLWDFLKEMSR-R 161
V G +A ++ E F ++ EM + + V ++M R R
Sbjct: 400 VLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRYR 459
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
++VT S+ L+ E+GLV A+ F M C+PD+++YN V+ LCR +
Sbjct: 460 CTPDIVTYSS---LLNGFSEQGLVEVAIQLFRSMP---CKPDIFSYNAVLKGLCRAARWE 513
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
A L+ +M G CPP+ T+ ILI+S C+ G+
Sbjct: 514 DAGELIAEM--VGKDCPPNEVTFNILINSLCQKGL 546
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
+ + + + EM R+G +T + LI L + LV+ A+ +M+++ C PD YN
Sbjct: 309 EDIGELMAEMVRKGCSP--NEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYN 366
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++IN+L G + A LL M C PD + ++ +C+
Sbjct: 367 IIINSLSERGRVDDALRLLNSMV-----CKPDALGFNAVLKGFCR 406
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 11/128 (8%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
NE T + + N V + L++M + G T +I L E G V++AL
Sbjct: 326 NEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEP--DTVNYNIIINSLSERGRVDDALR 383
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR--CPPDVYTYTILI 248
M C+PD +N V+ CR ++ A L+ QM FR CP T+ ILI
Sbjct: 384 LLNSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQM----FRDDCPLIEMTFNILI 436
Query: 249 SSYCKYGM 256
C+ G+
Sbjct: 437 DMLCQNGL 444
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 141 VFARGNNVKGL-----WDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFY 193
+F+ +KGL W+ E+ G+ + VT LI L ++GLV+ A+
Sbjct: 496 IFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLE 555
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M + PD++ YN +IN G + A LL M C PD +Y + C+
Sbjct: 556 QMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTMS-----CKPDAISYNSTLKGLCR 610
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
NEVT F + + L +M R G ++V ST LI E+G V++AL
Sbjct: 224 NEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYST---LINGFSEQGHVDQAL 280
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
M C+P+ YN + LC + L+ +M G C P+ T+++LIS
Sbjct: 281 DLLNTML---CKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKG--CSPNEATFSMLIS 335
Query: 250 SYCK 253
S C+
Sbjct: 336 SLCQ 339
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RC P+ + I + C+ G ++A LL+QM P + C PDV Y+ LI+ + + G
Sbjct: 220 RCPPNEVTFATQIRSFCQNGLLDRAVQLLDQM--PRYGCTPDVVIYSTLINGFSEQG 274
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 149 KGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
KGL D L++M G+ + T LI E+G +++AL M C+PD
Sbjct: 544 KGLVDRAIEVLEQMPNYGSTPDIFTYNA--LINGFSEQGRLDDALKLLSTMS---CKPDA 598
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+YN + LCR + A L+ +M +C P+ T+
Sbjct: 599 ISYNSTLKGLCRAERWQDAEELVAEMLRN--KCTPNEVTF 636
>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
Length = 768
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ G N+ G ++M G T TV LI ++G +++AL+ R
Sbjct: 248 YIEGGNLDGALRIKEQMVEYGCP--CTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFR 305
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD + YN ++N LC++G+ A +++ M L G PD+YTY LIS CK G
Sbjct: 306 PDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGL--DPDIYTYNSLISGLCKLG 357
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
F + ++ + EM +G V+ +VT LI L + V +A +M
Sbjct: 493 FCKNKRIEEAEEIFDEMELQG----VSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEG 548
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RPD + YN ++ C+ G+ KA +++ M G C PD+ TY LIS CK G
Sbjct: 549 LRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSG--CNPDIVTYATLISGLCKAG 602
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T LI+ L A+ F MK CRPD + YN++I++LC +A
Sbjct: 408 GILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEA 467
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LL++MEL G C +V Y LI +CK
Sbjct: 468 LNLLKEMELNG--CARNVVIYNTLIDGFCK 495
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + G A+ M PD+Y YN +I+ LC++G +A +L+QM
Sbjct: 310 TYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQM 369
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C P+ TY +ISS CK
Sbjct: 370 --VSRDCSPNAVTYNAIISSLCK 390
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T T +++ E G ++ AL +M ++ C NV+IN C+ G ++A +++
Sbjct: 239 TTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQE 298
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
GFR PD +TY L++ CK G
Sbjct: 299 AVSEGFR--PDQFTYNTLVNGLCKIG 322
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
+N K D +EM +G G T LI L + EAL M+ C +V
Sbjct: 427 SNHKSAMDLFEEM--KGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVV 484
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN +I+ C+ +A + ++MEL G D TY LI CK
Sbjct: 485 IYNTLIDGFCKNKRIEEAEEIFDEMELQGV--SRDSVTYNTLIDGLCK 530
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
LV A ++ R R R DV +N++I ALC+ A ++E+M P + PD T
Sbjct: 186 LVESAHSSMVRR---RIRHDVSTFNILIKALCKAHQVRPAILMMEEM--PSYGLSPDETT 240
Query: 244 YTILISSYCKYG 255
+T ++ Y + G
Sbjct: 241 FTTIMQGYIEGG 252
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + G + EA+ +M C P+ YN +I++LC+ ++A + +
Sbjct: 345 TYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLL 404
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
G PDV T+ LI C
Sbjct: 405 TSKGIL--PDVCTFNSLIQGLC 424
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 16/149 (10%)
Query: 110 LGINKATEFYHWVE---RFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL 166
+GI K E + ++ RF++ N V N +K + M RR
Sbjct: 152 VGIVKVMEDEYRIKPDTRFYNVLLN---------VLVDANKLKLVESAHSSMVRRRIRHD 202
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
V+T + LIK L + V A+ M + PD + ++ GN + A +
Sbjct: 203 VSTFNI--LIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRI 260
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
EQM G CP T +LI+ +CK G
Sbjct: 261 KEQMVEYG--CPCTDVTVNVLINGFCKQG 287
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + +A M C PD+ Y +I+ LC+ G A LL +++ G P Y
Sbjct: 567 GDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAY 626
Query: 243 TYTI 246
I
Sbjct: 627 NPVI 630
>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
Length = 767
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L+EM R NGE T T + I L G V AL + +VY YN +I+
Sbjct: 276 EILEEMER--NGESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIH 333
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G ++A +LE+M+ G PDVYTY+ILI +CK G
Sbjct: 334 GLCKKGELDEALKVLEEMKSCGI--SPDVYTYSILIHGFCKQG 374
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R V+ DF++ + NG LV +I L ++G ++EAL MK
Sbjct: 300 LCRVGYVESALDFVRSLIS-ANG-LVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGIS 357
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDVY Y+++I+ C+ G+ K +L+E+M+ P + +Y+ L CK
Sbjct: 358 PDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNME--PSLVSYSSLFHGLCK 407
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI +L + EA F +M + PD +Y VI CR+G+ KA L +M
Sbjct: 609 TILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQ 668
Query: 233 PGFRCPPDVYTYTILISSYCK 253
G P V TYT L+ YCK
Sbjct: 669 RGHL--PTVVTYTSLVDGYCK 687
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R +++ W EM +RG+ L T T T L+ + ++ A MK+
Sbjct: 650 FCRIGDMRKAWALFNEMLQRGH--LPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGIT 707
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
PDV YNV+I A R GN +KA +L +M+ G PD TY +L
Sbjct: 708 PDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVL--PDHMTYMML 751
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ LI ++ +AL + RM + PD+ AY ++IN LC +A L ++M
Sbjct: 574 STLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTE 633
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G PD +YT +I+ +C+ G
Sbjct: 634 NGM--TPDKISYTSVIAGFCRIG 654
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
++ K+M+ NG + T +I G + +A A F M Q P V Y ++
Sbjct: 625 YNLFKKMTE--NGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLV 682
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ C++ + A L+++M+ G PDV TY +LI+++ + G
Sbjct: 683 DGYCKMNRIDIADMLIDEMKRKGI--TPDVVTYNVLIAAHRRRG 724
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 16/124 (12%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQF 198
VFA + ++ D + + G + ST +C L+K L E + F MK
Sbjct: 188 VFAANSMLENAVDVFLQAKKTG----LELSTRSCNFLLKCLAEANRREFLRSLFEEMKST 243
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARF-------LLEQMELPGFRCPPDVYTYTILISSY 251
P+V+ Y +++N C+ GNF +A +LE+ME G P V TY+ I
Sbjct: 244 GPPPNVFTYTIMMNFYCK-GNFGEADIDTRQATEILEEMERNGE--SPTVVTYSTYIYGL 300
Query: 252 CKYG 255
C+ G
Sbjct: 301 CRVG 304
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LIKV ++ A+ F + K+ + N ++ L R L E+M+ G
Sbjct: 185 LIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEEMKSTG 244
Query: 235 FRCPPDVYTYTILISSYCK 253
PP+V+TYTI+++ YCK
Sbjct: 245 --PPPNVFTYTIMMNFYCK 261
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 150 GLW----DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
GLW +F M G L + +T +I EG V EAL M+ P+++
Sbjct: 479 GLWVNALEFFNMMLE--GGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLF 536
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFR-CPPDVYTYTILISSYCK 253
YN VIN LC+ +A LE L R P V Y+ LI + K
Sbjct: 537 TYNAVINRLCKERKSERA---LELFPLMLKRNVLPSVVVYSTLIDGFAK 582
>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
Length = 736
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ +KEM R+G + TST + +I L V +A F MK PDVY Y ++I
Sbjct: 208 FQLIKEMMRKGF--VPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 265
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++ C+ G +A++L E+M G C P V TYT LI +Y K
Sbjct: 266 DSFCKAGLIEQAQWLFEEMRSVG--CSPTVVTYTALIHAYLK 305
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + + +M++ G L + T T LI + ++G ++ A+ +M + C
Sbjct: 424 FCKAGKIDSAQEVFLQMTK--CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT 481
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V Y +I+ LCR+G KA LL ME G C P+V TYT LI K G
Sbjct: 482 PNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG--CSPNVVTYTALIDGLGKAG 533
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G + K L L M +G V T T LI LG+ G ++ +L F +M + C P+
Sbjct: 498 GESEKAL-KLLSLMEEKGCSPNVVTYTA--LIDGLGKAGKIDLSLDLFTQMSRKGCSPNY 554
Query: 205 YAYNVVINALCRVGNFNKARFLLEQME-------LPGFRCPPDVYTYTILIS 249
Y V+IN LC G +KAR LL +M+ L G+RC ++ + + S
Sbjct: 555 VTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIAS 606
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD Y+ VI LC KA L ++M++ G PDVYTYTILI S+CK G+
Sbjct: 221 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGV--TPDVYTYTILIDSFCKAGL 273
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 63/162 (38%), Gaps = 6/162 (3%)
Query: 96 VLGPAAYRNPQKVTLGINKATEFYHWVERFFH--FFHNEVTCKEMGIVFARGNNVKGLWD 153
VL N + G+ K + + ++ F + T ++ V+ +
Sbjct: 185 VLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFL 244
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+EM G V T T+ LI + GL+ +A F M+ C P V Y +I+A
Sbjct: 245 LFQEMKMVGVTPDVYTYTI--LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHA 302
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +A + +M G C P+ TY L+ CK G
Sbjct: 303 YLKAKQVPQANDIFHRMVDAG--CRPNDVTYGALVDGLCKAG 342
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W F +EM R G T T T LI + V +A F+RM CRP+ Y ++
Sbjct: 279 WLF-EEM--RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALV 335
Query: 212 NALCRVGNFNKARFLLEQMELPG--------FRC------PPDVYTYTILISSYCK 253
+ LC+ GN +KA + ++ F C P+V TY L+ CK
Sbjct: 336 DGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCK 391
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
FA +G W +M R + +L T T +I L E +EA++ +RM+ C
Sbjct: 16 FAHALCKEGRWADALDMIEREDFKL-DTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCI 74
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P+V Y +++ + + ++ M G C P+ + L+ SYC
Sbjct: 75 PNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEG--CNPNPSLFNSLVHSYC 123
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + V+ A M C P+ Y+ +I+ C+ G + A+ + QM
Sbjct: 381 TYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 440
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G+ P V+TYT LI K G
Sbjct: 441 TKCGYL--PSVHTYTSLIDRMFKDG 463
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R + W KEM G G V T TV LI L G +++A + +M+
Sbjct: 280 LGRARRIDDAWGIFKEMDDEGCGPDVITYTV--LIDALCAAGKLDKAKELYVKMRASSHS 337
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y +++ +VG+ + +ME+ G+ PDV TYTILI + CK G
Sbjct: 338 PDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGY--APDVVTYTILIEALCKSG 389
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTT-STVTCLIKVLGEEGLVNEAL 189
N +T + + NN+ D E+ +G+ T T LI L + G +A+
Sbjct: 865 NAITHNIIISALVKSNNLNKALDLYYELM---SGDFSPTPCTYGPLIDGLLKAGRSEQAM 921
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
F M + C P+ YN++IN + G + A L ++M G R PD+ +YTIL+
Sbjct: 922 KIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIR--PDLKSYTILVE 979
Query: 250 SYCKYG 255
C G
Sbjct: 980 CLCITG 985
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G NEAL + RM +P + Y+ ++ AL R G+ K LLE+M+ G R P++Y
Sbjct: 214 GFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLR--PNIY 271
Query: 243 TYTILISS 250
TYTI I +
Sbjct: 272 TYTICIRA 279
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I LG+ ++EAL+ F MK PD+Y YN +I L G + A + E+++L G
Sbjct: 1012 IINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVG 1071
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P V+TY LI + G
Sbjct: 1072 LE--PSVFTYNALIRGHSLSG 1090
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + + K+M + G + + T+ L++ L G ++EA+ F +K
Sbjct: 946 FGKSGEIDFACELFKKMVKEGIRPDLKSYTI--LVECLCITGRIDEAVQYFEELKLTGLD 1003
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
PD +YN +IN L + ++A L +M+ G PD+YTY LI
Sbjct: 1004 PDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGI--SPDLYTYNALI 1048
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T L+ L + V+ AL F RM C PDV YN +I L R G + A +
Sbjct: 620 TITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFH 679
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
QM+ PD T LI ++G
Sbjct: 680 QMKK---FLSPDYVTLCTLIPGVVRHG 703
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 5/144 (3%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++KA E Y + H + VT + F + +++ + F EM G V T T
Sbjct: 321 LDKAKELYVKMRASSHS-PDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYT 379
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ LI+ L + G V+ A M P+++ YN +I L + ++A LLE ME
Sbjct: 380 I--LIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENME 437
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
G + P ++Y + I Y K G
Sbjct: 438 SLGVK--PTAFSYVLFIDYYGKSG 459
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 10/137 (7%)
Query: 123 ERFFHFFH------NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLI 176
E F+ H + VT + +++ + L EM +G V + LI
Sbjct: 500 EDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMI--INSLI 557
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
L + G V+ A F R+K + P V YN+++ L + G KA L M G
Sbjct: 558 NTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESG-- 615
Query: 237 CPPDVYTYTILISSYCK 253
CPP+ T+ L+ K
Sbjct: 616 CPPNTITFNSLLDCLSK 632
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G+ G ++ A F +M + RPD+ +Y +++ LC G ++A E+++L G
Sbjct: 942 LINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTG 1001
Query: 235 FRCPPDVYTYTILISSYCK 253
PD +Y +I+ K
Sbjct: 1002 L--DPDTVSYNFIINGLGK 1018
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 153 DFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
D + M +RG + S C + L E G ++EA F + + PD YN++
Sbjct: 466 DTFETMKKRG----IMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNML 521
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ + G +KA LL +M G C PDV LI++ K G
Sbjct: 522 MKCYSKAGQIDKATQLLSEMISKG--CEPDVMIINSLINTLYKAG 564
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T + CL+ L +AL F MK P+ + YN++++A + NK L
Sbjct: 795 TLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLY 854
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
+M G C P+ T+ I+IS+ K
Sbjct: 855 SEMRSRG--CEPNAITHNIIISALVK 878
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ G+ +N+ + M+ C P+ +N++I+AL + N NKA L ++
Sbjct: 833 TYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYEL 892
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
F P TY LI K G
Sbjct: 893 MSGDF--SPTPCTYGPLIDGLLKAG 915
Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
EM RG T LI LG G V+ A+ + ++ P V+ YN +I
Sbjct: 1028 LFSEMKNRGISP--DLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRG 1085
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
GN ++A + ++M + G C P+ T+ L + Y + G+
Sbjct: 1086 HSLSGNKDQAFSVFKKMMVVG--CSPNTETFAQLPNKYPRAGL 1126
>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
Length = 670
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 106 QKVTLGINKATEFYHWVERFFHFFHN---EVTCKEMGIVFARGNNV---KGLWDFLKE-- 157
+K + I KA H E+ F E CK G F NV +GL+ E
Sbjct: 125 EKCFIVIFKAYGKAHLPEKAVDLFDRMACEFECKRTGKSFNSVLNVIIQEGLFHRALEFY 184
Query: 158 ---MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
+ +G T +IK + + GLV++A+ F M +C PDVY Y +++ L
Sbjct: 185 NHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGL 244
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ ++A LL++M++ G C P T+ +LI+ CK G
Sbjct: 245 CKADRIDEAVSLLDEMQIDG--CFPSPVTFNVLINGLCKKG 283
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N TC + F N + K+M++ + +V LI L ++G V EA+
Sbjct: 443 NAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSV--LIHGLCKDGKVKEAMM 500
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+ +M C+PDV AY+ +IN L G A L +M G PDV TY IL+++
Sbjct: 501 VWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNT 560
Query: 251 YCK 253
CK
Sbjct: 561 LCK 563
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 121 WVERFFH-FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKV 178
W + H F NEV + + VK +M +G ++V S+ +I
Sbjct: 467 WKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSS---MING 523
Query: 179 LGEEGLVNEALATFYRM--KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
L GLV +A+ + M + +PDV YN+++N LC+ + ++A LL M G
Sbjct: 524 LSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRG-- 581
Query: 237 CPPDVYTYTILI 248
C PD+ T TI +
Sbjct: 582 CDPDLVTCTIFL 593
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + + L EM + +G + T LI L ++G ++ A M C
Sbjct: 244 LCKADRIDEAVSLLDEM--QIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCI 301
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ YN +I+ LC G KA LL++M +C P+V TY +I+ K G
Sbjct: 302 PNEVTYNTLIHGLCLKGKLEKAISLLDRM--VSSKCVPNVVTYGTIINGLVKQG 353
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 146 NNVKGLWDF--LKEMSRRGNGE--LVTTSTVTCLIKVLGEEGLVNEALATFYRMK-QFRC 200
NN L DF L+++ R E ++ + K G+ L +A+ F RM +F C
Sbjct: 98 NNYANLGDFKSLEKVLDRMKCEKRVIFEKCFIVIFKAYGKAHLPEKAVDLFDRMACEFEC 157
Query: 201 RPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ ++N V+N + + G F++A F + G P+V T+ ++I + CK G+
Sbjct: 158 KRTGKSFNSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGL 214
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L +G + +A++ RM +C P+V Y +IN L + G +L M
Sbjct: 306 TYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALM 365
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G+ C + Y Y+ LIS K G
Sbjct: 366 EERGY-CVNE-YVYSTLISGLFKEG 388
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G V + LI L +EG EA+ F M + Y+ VI+ LCR G + A
Sbjct: 369 GYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDA 428
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+L +M G C P+ YT + L+ + + G
Sbjct: 429 VEVLSEMTNKG--CTPNAYTCSSLMKGFFEAG 458
>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
Length = 913
Score = 64.3 bits (155), Expect = 5e-08, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 16/178 (8%)
Query: 86 EADNIANNVLVLGPAA----YRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIV 141
EA + N +L++G AA + + + G+ + E V+R +T M V
Sbjct: 228 EAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRM-------MTKGCMPGV 280
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLG---EEGLVNEALATFYRMKQF 198
G ++GL + R V V V+G EG + EA + M
Sbjct: 281 MTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLK 340
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
C+PD + Y+++++ LC++G A LL +ME GF P+V TYTI++ S+CK GM
Sbjct: 341 GCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGF--APNVVTYTIVLHSFCKNGM 396
Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 154 FLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
L+EM+ +G + + V+ LI L +E V +AL +M PD+ YN +I
Sbjct: 543 LLEEMAEKG----IKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLI 598
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N LC++G + A LLE++ PD+ TY ILIS +CK
Sbjct: 599 NGLCKMGWMHAALNLLEKLHNENVH--PDIITYNILISWHCK 638
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
TT T + L G +EALA M + C PD Y VI+ALC G +A LL
Sbjct: 174 TTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLL 233
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M L G C DV T+ ++ C G
Sbjct: 234 NEMLLMG--CAADVNTFDDVVRGMCGLG 259
Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L +G +A+ M C DV +YN +I A+C+ GN +++ LLE+M
Sbjct: 488 TYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEM 547
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G + P+ +Y ILIS CK
Sbjct: 548 AEKGIK--PNNVSYNILISELCK 568
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LIK + ++G V+ +L M + +P+ +YN++I+ LC+ A L +QM G
Sbjct: 527 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQG 586
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD+ TY LI+ CK G
Sbjct: 587 L--APDIVTYNTLINGLCKMG 605
Score = 45.4 bits (106), Expect = 0.025, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 43/145 (29%)
Query: 150 GLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
G+WD L+EMS +G + + +I L ++G ++EA+ M+ C PD+
Sbjct: 395 GMWDDTRALLEEMSAKG--LTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDIC 452
Query: 206 AYNVVINALC-----------------------------------RVGNFNKARFLLEQM 230
+YN +I LC R G + A L ++M
Sbjct: 453 SYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEM 512
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L G C DV +Y LI + CK G
Sbjct: 513 ILHG--CSLDVVSYNGLIKAMCKDG 535
Score = 43.5 bits (101), Expect = 0.078, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+EM ++G V T T+ ++ + G+ ++ A M + YN +I A
Sbjct: 368 LLREMEKKGFAPNVVTYTI--VLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYA 425
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
LC+ G ++A L+++M G C PD+ +Y +I C
Sbjct: 426 LCKDGRMDEAMGLIQEMRSQG--CNPDICSYNTIIYHLC 462
Score = 43.5 bits (101), Expect = 0.091, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
++ VL +ALA + RM + R P + + V ALCR+G ++A LL M
Sbjct: 145 VLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARH 204
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G C PD Y +I + C G
Sbjct: 205 G--CVPDAVLYQTVIHALCDQG 224
Score = 38.1 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ L + G + A+ M++ P+V Y +V+++ C+ G ++ R LLE+M
Sbjct: 348 TYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEM 407
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + Y +I + CK G
Sbjct: 408 SAKGLTL--NSQGYNGMIYALCKDG 430
>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
Length = 897
Score = 64.3 bits (155), Expect = 5e-08, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 16/178 (8%)
Query: 86 EADNIANNVLVLGPAA----YRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIV 141
EA + N +L++G AA + + + G+ + E V+R +T M V
Sbjct: 212 EAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRM-------MTKGCMPGV 264
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLG---EEGLVNEALATFYRMKQF 198
G ++GL + R V V V+G EG + EA + M
Sbjct: 265 MTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLK 324
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
C+PD + Y+++++ LC++G A LL +ME GF P+V TYTI++ S+CK GM
Sbjct: 325 GCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGF--APNVVTYTIVLHSFCKNGM 380
Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 154 FLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
L+EM+ +G + + V+ LI L +E V +AL +M PD+ YN +I
Sbjct: 527 LLEEMAEKG----IKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLI 582
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N LC++G + A LLE++ PD+ TY ILIS +CK
Sbjct: 583 NGLCKMGWMHAALNLLEKLHNENVH--PDIITYNILISWHCK 622
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
TT T + L G +EALA M + C PD Y VI+ALC G +A LL
Sbjct: 158 TTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLL 217
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M L G C DV T+ ++ C G
Sbjct: 218 NEMLLMG--CAADVNTFDDVVRGMCGLG 243
Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L +G +A+ M C DV +YN +I A+C+ GN +++ LLE+M
Sbjct: 472 TYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEM 531
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G + P+ +Y ILIS CK
Sbjct: 532 AEKGIK--PNNVSYNILISELCK 552
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LIK + ++G V+ +L M + +P+ +YN++I+ LC+ A L +QM G
Sbjct: 511 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQG 570
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD+ TY LI+ CK G
Sbjct: 571 L--APDIVTYNTLINGLCKMG 589
Score = 45.4 bits (106), Expect = 0.025, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 43/145 (29%)
Query: 150 GLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
G+WD L+EMS +G + + +I L ++G ++EA+ M+ C PD+
Sbjct: 379 GMWDDTRALLEEMSAKG--LTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDIC 436
Query: 206 AYNVVINALC-----------------------------------RVGNFNKARFLLEQM 230
+YN +I LC R G + A L ++M
Sbjct: 437 SYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEM 496
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L G C DV +Y LI + CK G
Sbjct: 497 ILHG--CSLDVVSYNGLIKAMCKDG 519
Score = 43.5 bits (101), Expect = 0.078, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+EM ++G V T T+ ++ + G+ ++ A M + YN +I A
Sbjct: 352 LLREMEKKGFAPNVVTYTI--VLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYA 409
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
LC+ G ++A L+++M G C PD+ +Y +I C
Sbjct: 410 LCKDGRMDEAMGLIQEMRSQG--CNPDICSYNTIIYHLC 446
Score = 38.9 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 189 LATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A + RM + R P + + V ALCR+G ++A LL M G C PD Y +
Sbjct: 143 FALYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHG--CVPDAVLYQTV 200
Query: 248 ISSYCKYG 255
I + C G
Sbjct: 201 IHALCDQG 208
Score = 38.1 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ L + G + A+ M++ P+V Y +V+++ C+ G ++ R LLE+M
Sbjct: 332 TYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEM 391
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + Y +I + CK G
Sbjct: 392 SAKGLTL--NSQGYNGMIYALCKDG 414
>gi|2827705|emb|CAA16678.1| predicted protein [Arabidopsis thaliana]
Length = 598
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 99/244 (40%), Gaps = 47/244 (19%)
Query: 34 ASTTKTQNPFTIESVADVLKS---IPRFFFQSPRS--IGRQTGFRHRTPLKQRILKKEAD 88
+ +T+N E +DV KS + +F + P+ ++G R L +R+L + D
Sbjct: 59 SHNDRTKNSKYDEFASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGD 118
Query: 89 NIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNV 148
G YR F+ W + + H+ K M + ++
Sbjct: 119 A--------GNLGYR--------------FFVWAAKQPRYCHSIEVYKSMVKILSKMRQF 156
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
+W ++EM R+ N +L+ L++ +V +A+ M +F PD Y +
Sbjct: 157 GAVWGLIEEM-RKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFG 215
Query: 209 VVINALC-----------------RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+++ALC RVG +A+++L QM GF PD+ YT L+S Y
Sbjct: 216 CLLDALCKHGSVKDAAKLFEDMRMRVGKMMEAKYVLVQMNEAGF--EPDIVDYTNLLSGY 273
Query: 252 CKYG 255
G
Sbjct: 274 ANAG 277
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+A + +D L++M RRG + T LI+ L + + EA+ F M+++ C
Sbjct: 273 YANAGKMADAYDLLRDMRRRGFEP--NANCYTVLIQALCKVDRMEEAMKVFVEMERYECE 330
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
DV Y +++ C+ G +K +L+ M G P TY ++ ++ K
Sbjct: 331 ADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLM--PSELTYMHIMVAHEK 380
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ G + +A M++ P+ Y V+I ALC+V +A + +ME
Sbjct: 267 TNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEME- 325
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+ C DV TYT L+S +CK+G
Sbjct: 326 -RYECEADVVTYTALVSGFCKWG 347
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
E L +M+Q PD+ YNVVI C++G +A L +ME G P V T+
Sbjct: 385 EECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGL--SPGVDTFV 442
Query: 246 ILISSYCKYG 255
I+I+ G
Sbjct: 443 IMINGLASQG 452
>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 545
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+ VT + + + +WD EM RG V T LI L + G ++ A+A
Sbjct: 372 DTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNN--LIDALCKNGHLDRAIA 429
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F +MK RP+VY + ++++ LC+VG A + + G+ +V TYT++I+
Sbjct: 430 LFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGY--CLNVRTYTVMING 487
Query: 251 YCKYGM 256
CK G+
Sbjct: 488 LCKEGL 493
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L ++ LV+EA + M PDV Y+++++ C VG N+A LL +M L
Sbjct: 204 IIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLEN 263
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD+YTYTIL+ + CK G
Sbjct: 264 IN--PDIYTYTILVDALCKEG 282
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
VN A FY M Q PDV+ Y+++IN LC++ ++A L E++ PD TY
Sbjct: 319 VNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNM--VPDTVTY 376
Query: 245 TILISSYCKYG 255
T LI CK G
Sbjct: 377 TSLIDCLCKSG 387
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+EAL F + Q PD Y +I+ LC+ G + L ++M G PPDV TY
Sbjct: 354 VDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQ--PPDVITY 411
Query: 245 TILISSYCKYG 255
LI + CK G
Sbjct: 412 NNLIDALCKNG 422
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI + + G A+ R++++ RP+V Y+++I+ LC+ ++A L +M G
Sbjct: 169 LINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKG 228
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PDV TY+IL+S +C G
Sbjct: 229 I--SPDVVTYSILVSGFCIVG 247
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 148 VKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
V +D EM +G + ++VT S + ++G+ +N A+ M PD+Y
Sbjct: 214 VDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQ---LNRAIDLLNEMVLENINPDIYT 270
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
Y ++++ALC+ G +A +L M DV Y+ L+ YC
Sbjct: 271 YTILVDALCKEGKVKEAENVLAVMVKACVNL--DVVVYSTLMDGYC 314
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T+ L+K L EG V EAL ++ R +Y ++IN +C++G A LL
Sbjct: 128 TITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLR 187
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
++E R P+V Y+++I CK
Sbjct: 188 RIERWSIR--PNVVIYSMIIDRLCK 210
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
+K +F +++ +G V T TV +I L +EGL++EALA RM+ C D +
Sbjct: 459 LKNALEFFQDLLTKGYCLNVRTYTV--MINGLCKEGLLDEALALQSRMEDNGCISDAVTF 516
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGF 235
++I A +KA L+ +M G
Sbjct: 517 EIMIRAFFDKDENDKAEKLVREMIARGL 544
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
++A++ F M P + +N ++ +L V + A L +QMEL PD +T
Sbjct: 40 DDAVSQFNHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELS--EVEPDYFTLN 97
Query: 246 ILISSYCKYG 255
I+I+ +C +G
Sbjct: 98 IIINCFCHFG 107
>gi|413921612|gb|AFW61544.1| hypothetical protein ZEAMMB73_526638 [Zea mays]
Length = 456
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
LW +M RG G ++ +T + +I G L ++A+ F R+ +F C YN +
Sbjct: 128 LWSLASDM--RGLGLPLSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNAL 185
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ALC GNF A LL +M G PD T++ L+ S+C G
Sbjct: 186 LDALCANGNFTGAYKLLRRMARKG--VAPDRATFSTLVDSWCAAG 228
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
++A E ++ + RF EV + + A GN G + L+ M+R+G +T
Sbjct: 161 DQAVEVFNRLPRFGCPQTTEVYNALLDALCANGN-FTGAYKLLRRMARKGVAP--DRATF 217
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ L+ G + EA A M RP V +++++ L R G+ +A+ +M
Sbjct: 218 STLVDSWCAAGKLQEAQAFLDDMAGRGLRPPVRGRDLLVDGLVRAGHLEQAKAFALRMTK 277
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G PDV T+ L + C G
Sbjct: 278 EGIL--PDVATFNSLAEALCNAG 298
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL +M+ RG V + L+ L G + +A A RM + PDV +N + A
Sbjct: 236 FLDDMAGRGLRPPVRGRDL--LVDGLVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEA 293
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC G+ + A LL G C PD+ TY +++ + K G
Sbjct: 294 LCNAGDVDFAVSLLADASSRGL-C-PDISTYKVMLPAVAKVG 333
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L + S RG ++T V ++ + + G + EA FY + RP Y +I A
Sbjct: 306 LLADASSRGLCPDISTYKV--MLPAVAKVGKIEEAFRLFYAAVEDGHRPFPSLYAAIIKA 363
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G F A M+ G PP+ Y +L+ + G
Sbjct: 364 LCKAGRFADAFAFFGDMKTKGH--PPNRPVYVMLVKMCVRGG 403
>gi|224137884|ref|XP_002326464.1| predicted protein [Populus trichocarpa]
gi|222833786|gb|EEE72263.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 118 FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK 177
F+ W ++ HN + +F N + + D ++ + + +V T +++
Sbjct: 81 FFIWAGDQPNYRHNLYIYNKACSLFKIKQNPQVILDLIE--TYKLEKCVVCVDTFKVVLR 138
Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
+ GL +EAL +M +F RPD AYNVVI +LC G+ + A+ L+ +M L
Sbjct: 139 LCKAGGLADEALMVLKKMPEFNIRPDTTAYNVVIRSLCEKGDVDMAKKLMGEMGLIDLY- 197
Query: 238 PPDVYTYTILISSYCKYG 255
PD+ TY +I +C G
Sbjct: 198 -PDMITYVSMIKGFCDVG 214
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +IK + G + EA A F M C P+V AY+ +++ +CR G +A LL +M
Sbjct: 202 TYVSMIKGFCDVGRLEEAFALFPVMSVHGCYPNVVAYSALLDGICRFGIVERAFELLAEM 261
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G C P+V TYT +I S+C+ G
Sbjct: 262 EKQGEGCCPNVITYTSVIQSFCEQG 286
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 44/100 (44%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
V+ ++ L EM ++G G T T +I+ E+G +AL+ M+ C P+
Sbjct: 251 VERAFELLAEMEKQGEGCCPNVITYTSVIQSFCEQGRTKDALSVLELMEVRGCAPNRVTA 310
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
+ IN +C G +E++ G D Y+ ++
Sbjct: 311 SAWINGICTNGQLQDVYNFIERIVAGGSVSIGDCYSSLVV 350
>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
Length = 619
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L +EG + EA + F RMK+ C PDV +N +I+ + G ++ L+E+M
Sbjct: 190 TFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEM 249
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG-MQT 258
G C DV TY LI+ +CK+G M+T
Sbjct: 250 RRSG--CKADVVTYNALINCFCKFGRMET 276
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + ++ + + M R G + T + + +EGLV EA+ F +M+
Sbjct: 268 FCKFGRMETAYGYFAAMKR--EGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMA 325
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ + Y +I+ C+ G + A LL++M G P +V TYT+L+ CK
Sbjct: 326 LNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGV--PLNVVTYTVLVDGLCK 375
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 33/118 (27%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRC---------------------------- 200
S V L+ VL + GL+++A+ R+++ R
Sbjct: 122 ASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFE 181
Query: 201 ---RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V+ +N+VI+ LC+ G +AR L +M+ G C PDV T+ LI Y K G
Sbjct: 182 QLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMG--CLPDVVTFNSLIDGYGKCG 237
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE + AR L+ +KEM G L T LI G+ G ++E
Sbjct: 199 CKEGELAEARS-----LFSRMKEM-----GCLPDVVTFNSLIDGYGKCGELDEVEQLVEE 248
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M++ C+ DV YN +IN C+ G A M+ G +V T++ + ++CK
Sbjct: 249 MRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVM--ANVVTFSTFVDAFCKE 306
Query: 255 GM 256
G+
Sbjct: 307 GL 308
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVT-TSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ + + + ++EM R G ++VT + + C K G + A F MK+
Sbjct: 233 YGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKF----GRMETAYGYFAAMKREG 288
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+V ++ ++A C+ G +A L QM + G + +TYT LI CK G
Sbjct: 289 VMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGM--ALNEFTYTCLIDGTCKAG 342
>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Glycine max]
Length = 615
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G + T T LI + G V+ AL F M RPD+ YN +IN LC+VG+
Sbjct: 346 GRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLK 405
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+AR L+ +M G + PD T+T LI CK G
Sbjct: 406 EARRLVNEMTASGLK--PDKITFTTLIDGCCKDG 437
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI ++G + AL RM + D A+ +I+ LCR G + A +L M
Sbjct: 425 TFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDM 484
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF+ PD TYT++I +CK G
Sbjct: 485 LSAGFK--PDDPTYTMVIDCFCKKG 507
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
E+ RR E + V T LI L EG V++A M +PD Y +VI+
Sbjct: 444 EIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCF 503
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ G+ LL++M+ G P V TY L++ CK G
Sbjct: 504 CKKGDVKMGFKLLKEMQSDGHV--PGVVTYNALMNGLCKQG 542
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I ++G V M+ P V YN ++N LC+ G A+ LL+ M
Sbjct: 495 TYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAM 554
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P+ TY IL+ + K+G
Sbjct: 555 LNVGV--APNDITYNILLDGHSKHG 577
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + +V E+ +RG T + LI + G V E M+
Sbjct: 258 FCKAGDVGNARLVFDEIPKRGLRP--TVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVC 315
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV+ ++ +IN LC+ G ++ L ++M G P+ T+T LI CK G
Sbjct: 316 PDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLV--PNGVTFTTLIDGQCKGG 367
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P +Y +NV+++ C+ G+ AR + +++ G R P V ++ LIS CK G
Sbjct: 246 PKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLR--PTVVSFNTLISGCCKSG 297
>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 775
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE +V A K L+ +K+M G T LI G+ GL++E+ F
Sbjct: 263 CKEGDMVTA-----KSLFHQMKQM-----GLTPDIVTYNSLIDGYGKLGLLDESFCLFEE 312
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
MK C PDV YN +IN C+ KA L +M+ G + P+V TY+ LI + CK
Sbjct: 313 MKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLK--PNVVTYSTLIDALCKE 370
Query: 255 GM 256
M
Sbjct: 371 HM 372
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
F ++M G + V T + +I + +EG + A + F++MKQ PD+ YN +I+
Sbjct: 239 FFRDMVGAGIAQSVFTYNI--MIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDG 296
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
++G +++ L E+M+ G C PDV TY LI+ +CKY
Sbjct: 297 YGKLGLLDESFCLFEEMKDVG--CEPDVITYNALINCFCKY 335
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M F G V+ L + L+EM G VT T LI L ++GLV EA+ F RM
Sbjct: 539 MDAYFKTGKTVEAL-NLLQEMCDLGVE--VTIVTFCVLIDGLCKKGLVEEAIDYFARMAD 595
Query: 198 FRCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
F +P +V +I+ LC+ A+ L ++M+ PD YT LI K+
Sbjct: 596 FNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNM--VPDKIAYTALIDGNLKH 651
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + + + FL EM G +VT ST LI L +E ++ +A+ M++
Sbjct: 332 FCKYEQMPKAFHFLHEMKNSGLKPNVVTYST---LIDALCKEHMLQQAIKFLLDMRRVGL 388
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQM--ELPGFRCPPDVYTYTILISSYCKYG 255
P+ + Y +I+A C+ G + A L ++M GF +V TYT L+ CK G
Sbjct: 389 SPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGF----NVVTYTTLLDGLCKEG 441
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 13/144 (9%)
Query: 119 YHWVERFFHFFH---------NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTT 169
Y + + FHF H N VT + + + ++ FL +M R G
Sbjct: 335 YEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSP--NE 392
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T T LI + G +++AL M Q + +V Y +++ LC+ G +A L
Sbjct: 393 FTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRA 452
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
M G P++ TYT L+ + K
Sbjct: 453 MIKAGV--TPNLKTYTALVHGHIK 474
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 26/161 (16%)
Query: 115 ATEFYHWVERFFHF-FHNEVTCKEMGIVFARGNNVKGLWD---FLKEM--SRR-----GN 163
A +F+ W + F F E C + I+F + +D FLKE+ SRR
Sbjct: 112 ALKFFRWAKTKFGFCLTTESYCLLVHILFY----ARMYFDANFFLKELISSRRILPGFDV 167
Query: 164 GELVTTSTVTC---------LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
E++ ++ C L V E G++ EA F RM +FR P + N + L
Sbjct: 168 FEVLWSTRNVCVPGFGVFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRL 227
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G + + M G V+TY I+I CK G
Sbjct: 228 AKTGKGDLSNKFFRDMVGAGI--AQSVFTYNIMIGYMCKEG 266
>gi|125582060|gb|EAZ22991.1| hypothetical protein OsJ_06687 [Oryza sativa Japonica Group]
Length = 466
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 14/152 (9%)
Query: 111 GINKATEFYHWVERFFHFFHNEVTCKEMGI-----VFARGNNVKGLWDFLKEMSR-RGNG 164
G +A ++ E F ++ EM + + V ++M R R
Sbjct: 220 GFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRYRCTP 279
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT S+ L+ E+GLV A+ F M C+PD+++YN V+ LCR + A
Sbjct: 280 DIVTYSS---LLNGFSEQGLVEVAIQLFRSMP---CKPDIFSYNAVLKGLCRAARWEDAG 333
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L+ +M G CPP+ T+ ILI+S C+ G+
Sbjct: 334 ELIAEM--VGKDCPPNEVTFNILINSLCQKGL 363
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
+ + + + EM R+G +T + LI L + LV+ A+ +M+++ C PD YN
Sbjct: 126 EDIGELMAEMVRKGCSP--NEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYN 183
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++IN+L G + A LL M C PD + ++ +C+
Sbjct: 184 IIINSLSERGRVDDALRLLNSM-----VCKPDALGFNAVLKGFCR 223
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 11/128 (8%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
NE T + + N V + L++M + G T +I L E G V++AL
Sbjct: 143 NEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEP--DTVNYNIIINSLSERGRVDDALR 200
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR--CPPDVYTYTILI 248
M C+PD +N V+ CR ++ A L+ QM FR CP T+ ILI
Sbjct: 201 LLNSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQM----FRDDCPLIEMTFNILI 253
Query: 249 SSYCKYGM 256
C+ G+
Sbjct: 254 DMLCQNGL 261
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 141 VFARGNNVKGL-----WDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFY 193
+F+ +KGL W+ E+ G+ + VT LI L ++GLV+ A+
Sbjct: 313 IFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLE 372
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M + PD++ YN +IN G + A LL M C PD +Y + C+
Sbjct: 373 QMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTMS-----CKPDAISYNSTLKGLCR 427
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 150 GLWD----FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
GL D L +M R G ++V ST LI E+G V++AL M C+P+
Sbjct: 56 GLLDRAVQLLDQMPRYGCTPDVVIYST---LINGFSEQGHVDQALDLLNTM---LCKPNT 109
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN + LC + L+ +M G C P+ T+++LISS C+
Sbjct: 110 VCYNAALKGLCIAERWEDIGELMAEMVRKG--CSPNEATFSMLISSLCQ 156
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RC P+ + I + C+ G ++A LL+QM P + C PDV Y+ LI+ + + G
Sbjct: 37 RCPPNEVTFATQIRSFCQNGLLDRAVQLLDQM--PRYGCTPDVVIYSTLINGFSEQG 91
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
I+ + GL++ A+ +M ++ C PDV Y+ +IN G+ ++A LL M
Sbjct: 49 IRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTM----- 103
Query: 236 RCPPDVYTYTILISSYC 252
C P+ Y + C
Sbjct: 104 LCKPNTVCYNAALKGLC 120
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 149 KGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
KGL D L++M G+ + T LI E+G +++AL M C+PD
Sbjct: 361 KGLVDRAIEVLEQMPNYGSTPDIFTYNA--LINGFSEQGRLDDALKLLSTMS---CKPDA 415
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+YN + LCR + A L+ +M +C P+ T+
Sbjct: 416 ISYNSTLKGLCRAERWQDAEELVAEMLRN--KCTPNEVTF 453
>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
Length = 687
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L +EG + EA + F RMK+ C PDV +N +I+ + G ++ L+E+M
Sbjct: 190 TFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEM 249
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG-MQT 258
G C DV TY LI+ +CK+G M+T
Sbjct: 250 RRSG--CKADVVTYNALINCFCKFGRMET 276
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + ++ + + M R G +VT ST + +EGLV EA+ F +M+
Sbjct: 268 FCKFGRMETAYGYFAAMKREGVMANVVTFST---FVDAFCKEGLVREAMKLFAQMRVRGM 324
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ + Y +I+ C+ G + A LL++M G P +V TYT+L+ CK
Sbjct: 325 ALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGV--PLNVVTYTVLVDGLCK 375
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 33/118 (27%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRC---------------------------- 200
S V L+ VL + GL+++A+ R+++ R
Sbjct: 122 ASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFE 181
Query: 201 ---RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V+ +N+VI+ LC+ G +AR L +M+ G C PDV T+ LI Y K G
Sbjct: 182 QLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMG--CLPDVVTFNSLIDGYGKCG 237
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + G ++EA++ F +M+ P+V AY +++ LC+ G N+A L +M
Sbjct: 505 TYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEM 564
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G D YT L+ Y K G
Sbjct: 565 VHKGM--SLDKVVYTALLDGYLKQG 587
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE + AR L+ +KEM G L T LI G+ G ++E
Sbjct: 199 CKEGELAEARS-----LFSRMKEM-----GCLPDVVTFNSLIDGYGKCGELDEVEQLVEE 248
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M++ C+ DV YN +IN C+ G A M+ G +V T++ + ++CK
Sbjct: 249 MRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVM--ANVVTFSTFVDAFCKE 306
Query: 255 GM 256
G+
Sbjct: 307 GL 308
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
+ K L + E N + TT C + G V EA+A ++ +P+V
Sbjct: 450 DEAKSLLTKMDESGLEPNYIIYTTMMDACF-----KSGKVPEAIAMLQKILDSGFQPNVI 504
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +I+ LC+ G+ ++A +M G P+V YT L+ CK G
Sbjct: 505 TYCALIDGLCKAGSIDEAISHFNKMRDLGL--DPNVQAYTALVDGLCKNG 552
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVT-TSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ + + + ++EM R G ++VT + + C K G + A F MK+
Sbjct: 233 YGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKF----GRMETAYGYFAAMKREG 288
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+V ++ ++A C+ G +A L QM + G + +TYT LI CK G
Sbjct: 289 VMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGM--ALNEFTYTCLIDGTCKAG 342
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ L + G +NEA+ F M D Y +++ + GN + A L +M
Sbjct: 542 TALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMID 601
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
G + D++ YT IS +C M
Sbjct: 602 SGLQL--DLFCYTCFISGFCNLNM 623
>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
Length = 769
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ +KEM R+G + TST + +I L V +A F MK PDVY Y ++I
Sbjct: 442 FQLIKEMMRKGF--VPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 499
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++ C+ G +A++L E+M G C P V TYT LI +Y K
Sbjct: 500 DSFCKAGLIEQAQWLFEEMRSVG--CSPTVVTYTALIHAYLK 539
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + + +M++ G L + T T LI + ++G ++ A+ +M + C
Sbjct: 658 FCKAGKIDSAQEVFLQMTK--CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT 715
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
P+V Y +I+ LCR+G KA LL ME G C P+V TYT LI
Sbjct: 716 PNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG--CSPNVVTYTALIDG 762
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD Y+ VI LC KA L ++M++ G PDVYTYTILI S+CK G+
Sbjct: 455 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGV--TPDVYTYTILIDSFCKAGL 507
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 70/179 (39%), Gaps = 16/179 (8%)
Query: 80 QRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMG 139
+R+L++ + ++V+V A R+ ++ F+ W ER + H +
Sbjct: 93 ERVLRRCRGFLTDSVVVAVLGAVRDAPEL------CARFFLWAERQVGYSHTGACYDALA 146
Query: 140 IVFA---RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196
R + + L + E R G L+ L++ G+ NEAL R+K
Sbjct: 147 DALGFDGRARDAERLLREIGEEDREVLGRLLNV-----LVRRCCRGGMWNEALEELGRLK 201
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
F RP YN ++ L G + + ++M GF D +T + CK G
Sbjct: 202 DFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGF--CMDRFTVGCFAHALCKEG 258
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + GL+ +A F M+ C P V Y +I+A + +A + +M
Sbjct: 494 TYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 553
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P+ TY L+ CK G
Sbjct: 554 VDAG--CRPNDVTYGALVDGLCKAG 576
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W F +EM R G T T T LI + V +A F+RM CRP+ Y ++
Sbjct: 513 WLF-EEM--RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALV 569
Query: 212 NALCRVGNFNKARFLLEQMELPG--------FRC------PPDVYTYTILISSYCK 253
+ LC+ GN +KA + ++ F C P+V TY L+ CK
Sbjct: 570 DGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCK 625
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI + G ++ A F +M + P V+ Y +I+ + + G + A +L QM
Sbjct: 654 LIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDS 713
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+V TYT +I C+ G
Sbjct: 714 --CTPNVVTYTAMIDGLCRIG 732
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFR 199
FA +G W +M R + +L TV C +I L E +EA++ +RM+
Sbjct: 250 FAHALCKEGRWADALDMIEREDFKL---DTVLCTHMISGLMEASYFDEAMSFLHRMRCNS 306
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C P+V Y +++ + + ++ M G C P+ + L+ SYC
Sbjct: 307 CIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEG--CNPNPSLFNSLVHSYC 357
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + V+ A M C P+ Y+ +I+ C+ G + A+ + QM
Sbjct: 615 TYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 674
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G+ P V+TYT LI K G
Sbjct: 675 TKCGYL--PSVHTYTSLIDRMFKDG 697
>gi|125537003|gb|EAY83491.1| hypothetical protein OsI_38705 [Oryza sativa Indica Group]
Length = 696
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T+ LI G V+ A F +M CRPD + YN +++ +CR G ++A L+
Sbjct: 187 STAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDRFTYNSLVHGVCRRGIVDEAVRLV 246
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
QME G R P+V+TYT+L+ +C G
Sbjct: 247 RQMEGEGIR--PNVFTYTMLVDGFCNAG 272
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L +++A F M ++ RP+ YNV+++ LC G+ NKA LL +M
Sbjct: 505 TFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKM 564
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
++ G PD Y++ LI S+C+
Sbjct: 565 KIDGV--TPDAYSFNALILSFCR 585
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 7/141 (4%)
Query: 118 FYHWVERFFHFFHNEVTCKE--MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCL 175
Y W RF F + + +G ++ RG V + E+ RG G V+ V L
Sbjct: 103 LYVWASRFGAHFARDGGVRRALVGALWRRGPVVLS-GRLVAEV--RGCGCEVSEELVCAL 159
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
++ G GL A F +M + RP YN +I A R G + A +QM P
Sbjct: 160 VESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQM--PAD 217
Query: 236 RCPPDVYTYTILISSYCKYGM 256
C PD +TY L+ C+ G+
Sbjct: 218 GCRPDRFTYNSLVHGVCRRGI 238
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L G VN+A+ +MK PD Y++N +I + CR+ +KA + M
Sbjct: 540 TYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDM 599
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
F PD YTY LI + C
Sbjct: 600 VR--FGVVPDSYTYNSLIKALC 619
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V + +KEM +G L T LI + G V+ A + +
Sbjct: 443 FVKAGAVDKAEEIVKEMQDKGF--LPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFM 500
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ + +I+ LC + A E+M G R P+ TY +L+ + C G
Sbjct: 501 PDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVR--PNAQTYNVLMHTLCSAG 552
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ + G+V+EA+ +M+ RP+V+ Y ++++ C G +A +L++M
Sbjct: 225 TYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKM 284
Query: 231 ELPGFRCPPDVYTYTILI 248
+ G P TY L+
Sbjct: 285 KEKGV--APSEATYRTLV 300
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L + + +I + G V++A M+ P++ +N +I+ ++GN + A
Sbjct: 428 GLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNA 487
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ +L+ + GF PD+ T+T LI C
Sbjct: 488 KVVLKMLMEHGFM--PDIITFTSLIDGLC 514
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V +YN+VI+ + G +KA ++++M+ GF P++ T+ LIS Y K G
Sbjct: 433 VMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFL--PNLVTFNTLISGYSKLG 482
>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
Length = 592
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
F EM + G + T L+ + GLV EA++ F+++++ R ++ Y VIN
Sbjct: 410 FFDEM--QAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVING 467
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC+ G +KA E++ L G PDV TYT +IS YC+ G+
Sbjct: 468 LCKNGKLDKAHATFEKLPLIGLH--PDVITYTAMISGYCQEGL 508
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T T LI+ L E V +A+ F ++ ++ C PD Y V++ LC+ G+ KA LL
Sbjct: 144 TFTTLIRGLFAENKVKDAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRL 203
Query: 230 MELPGFRCPPDVYTYTILISSYCKYGM 256
ME G PD Y I+I ++CK GM
Sbjct: 204 ME-QGIT-KPDTCIYNIVIDAFCKDGM 228
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
C +G F G + + F K RR E T +I L + G +++A ATF +
Sbjct: 427 CTLLGGYFKNGLVEEAMSHFHKLERRR---EDTNIQIYTAVINGLCKNGKLDKAHATFEK 483
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+ PDV Y +I+ C+ G ++A+ +L +ME G C PD TY +++ +
Sbjct: 484 LPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNG--CLPDNRTYNVIVRGF 538
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L ++G +A M+Q +PD YN+VI+A C+ G + A LL +M+ P
Sbjct: 188 LCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNI--P 245
Query: 239 PDVYTYTILISSYCK 253
PD+ TYT LI K
Sbjct: 246 PDIITYTSLIDGLGK 260
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + G L EM ++ + T T LI LG+ + F M
Sbjct: 223 FCKDGMLDGATSLLNEMKQKNIPPDIIT--YTSLIDGLGKLSQWEKVRTLFLEMIHLNIY 280
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV +N VI+ LC+ G A ++ M G P+ TY +++ YC G
Sbjct: 281 PDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVE--PNEITYNVVMDGYCLRG 332
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L +EG V +A M + P+ YNVV++ C G +AR + + M
Sbjct: 285 TFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSM 344
Query: 231 ELPGFRCPPDVYTYTILISSY 251
G PD+ +YT LI+ Y
Sbjct: 345 IDKGIE--PDIISYTALINGY 363
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I ++G+++ A + MKQ PD+ Y +I+ L ++ + K R L +E+
Sbjct: 219 VIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLF--LEMIH 276
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PDV T+ +I CK G
Sbjct: 277 LNIYPDVCTFNSVIDGLCKEG 297
>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
Length = 468
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM+ R G + T + LI L G + +AL F M + C+P+ Y Y +I
Sbjct: 208 ILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAG 267
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LCR +AR L E+M PPD Y LI+ YCK G
Sbjct: 268 LCRAEKVIQARELFEKMTQACI--PPDAVAYNSLIAGYCKRG 307
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++ L + G++ +AL F MK C P + YNV+IN+ C G F KA L + M+
Sbjct: 16 VVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKREK 75
Query: 235 FRCPPDVYTYTILISSYCKYG 255
R PD +TY LIS C G
Sbjct: 76 -RVEPDRWTYNTLISGLCSSG 95
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N +G L EM R T + +IK L +E E+ M C PDV+
Sbjct: 95 GNTEGARKLLSEM--RDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVF 152
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A+N V+ R N KAR + + M G++ PD +Y ILI K G
Sbjct: 153 AFNGVMQGFARSNNMEKAREVYQHMVESGYK--PDNVSYHILIHGLAKIG 200
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L V +A F +M Q PD AYN +I C+ G+ ++A L +M
Sbjct: 260 TYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREM 319
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P + T+ LI +CK G
Sbjct: 320 S-GGAGLQPTIVTFNTLIDGFCKLG 343
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 183 GLVNEALATFYRMK-QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
G +AL F MK + R PD + YN +I+ LC GN AR LL +M +V
Sbjct: 59 GEFGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNI--AANV 116
Query: 242 YTYTILISSYCK 253
+TY+ +I S K
Sbjct: 117 FTYSSIIKSLVK 128
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 39/71 (54%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+ +A + M + +PD +Y+++I+ L ++G +++ +L +M + P+V T+
Sbjct: 167 MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITF 226
Query: 245 TILISSYCKYG 255
+ LI C+ G
Sbjct: 227 STLIHGLCRTG 237
>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 664
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 104/238 (43%), Gaps = 33/238 (13%)
Query: 20 PLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRS--IGRQTGFRHRTP 77
P+ LK P ++ + + + F+++ V V + + +F + P+ +++G R+
Sbjct: 77 PIHLKTTPHES----AHDRDADEFSVD-VEKVYRILRKFHTRVPKLELALQESGVIMRSG 131
Query: 78 LKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKE 137
L +R+L + D G YR F+ W + + H+ K
Sbjct: 132 LPERVLSRCGDA--------GNLGYR--------------FFVWASKQPGYRHSYEVYKA 169
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M + +W ++EM R+ N ++T L++ +V +A+ M +
Sbjct: 170 MIKTLGKMRQFGAVWALIEEM-RKENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPK 228
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ C PD Y + +++ALC+ G+ +A L E M + R P++ +T L+ +C+ G
Sbjct: 229 YGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRV---RFNPNLRHFTSLLYGWCREG 283
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ + G + +A MK+ C P+ ++ ++I + C+ ++A + +M+ G
Sbjct: 310 LLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSG 369
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C DV TYT LIS +CK+G
Sbjct: 370 --CEADVVTYTTLISGFCKWG 388
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 35/147 (23%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+A+ ++ +D L EM + G ++ T LI+ + ++EA+ F M+ C
Sbjct: 314 YAQAGKMRDAFDLLAEMKKVNCGP--NAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCE 371
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQM------------------------------- 230
DV Y +I+ C+ GN +KA +L+ M
Sbjct: 372 ADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMEL 431
Query: 231 --ELPGFRCPPDVYTYTILISSYCKYG 255
E+ C PD+ Y +I CK G
Sbjct: 432 IEEMRKIGCVPDLNIYNTMIRLVCKLG 458
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + N ++ L +M ++G+ + + C++ ++ + E + M++ C
Sbjct: 384 FCKWGNTDKAYEILDDMIQKGHDP--SQLSYLCIMMAHEKKEELEECMELIEEMRKIGCV 441
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ YN +I +C++G+ +A L +M+ G P + TY +++ + G
Sbjct: 442 PDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLN--PGLDTYILMVHGFLSQG 493
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
EG + EA ++K+ PD+ YN ++ + G A LL +M+ C P+
Sbjct: 282 EGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMK--KVNCGPNA 339
Query: 242 YTYTILISSYCK 253
++TILI S+CK
Sbjct: 340 ASFTILIQSFCK 351
>gi|125539409|gb|EAY85804.1| hypothetical protein OsI_07165 [Oryza sativa Indica Group]
Length = 649
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 14/152 (9%)
Query: 111 GINKATEFYHWVERFFHFFHNEVTCKEMGI-----VFARGNNVKGLWDFLKEMSR-RGNG 164
G +A ++ E F ++ EM + V ++M R R
Sbjct: 403 GFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDTLCQNGLVNYATQVFEQMPRYRCTP 462
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT S+ L+ E+GLV A+ F M C+PD+++YN V+ LCR + A
Sbjct: 463 DIVTYSS---LLNGFSEQGLVEVAIQLFRSMP---CKPDIFSYNAVLKGLCRAARWEDAG 516
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L+ +M G CPP+ T+ ILI+S C+ G+
Sbjct: 517 ELIAEMV--GKDCPPNEVTFNILINSLCQKGL 546
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
+ + + + EM R+G +T + LI L + LV+ A+ +M+++ C PD YN
Sbjct: 309 EDIGELMAEMVRKGCSP--NEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYN 366
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++IN+L G + A LL M C PD + ++ +C+
Sbjct: 367 IIINSLSERGRVDDALRLLNSMV-----CKPDALGFNAVLKGFCR 406
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
NE T + + N V + L++M + G T +I L E G V++AL
Sbjct: 326 NEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEP--DTVNYNIIINSLSERGRVDDALR 383
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR--CPPDVYTYTILI 248
M C+PD +N V+ CR ++ A L+ QM FR CP T+ ILI
Sbjct: 384 LLNSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQM----FRDDCPLIEMTFNILI 436
Query: 249 SSYCKYGM 256
+ C+ G+
Sbjct: 437 DTLCQNGL 444
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 141 VFARGNNVKGL-----WDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFY 193
+F+ +KGL W+ E+ G+ + VT LI L ++GLV+ A+
Sbjct: 496 IFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLE 555
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M + PD++ YN +IN G + A LL M C PD +Y + C+
Sbjct: 556 QMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTMS-----CKPDAISYNSTLKGLCR 610
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
NEVT F + + L +M R G ++V ST LI E+G V++AL
Sbjct: 224 NEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYST---LINGFSEQGHVDQAL 280
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
M C+P+ YN + LC + L+ +M G C P+ T+++LIS
Sbjct: 281 DLLNTML---CKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKG--CSPNEATFSMLIS 335
Query: 250 SYCK 253
S C+
Sbjct: 336 SLCQ 339
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RC P+ + I + C+ G ++A LL+QM P + C PDV Y+ LI+ + + G
Sbjct: 220 RCPPNEVTFATQIRSFCQNGLLDRAVQLLDQM--PRYGCTPDVVIYSTLINGFSEQG 274
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 149 KGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
KGL D L++M G+ + T LI E+G +++AL M C+PD
Sbjct: 544 KGLVDRAIEVLEQMPNYGSTPDIFTYNA--LINGFSEQGRLDDALKLLSTMS---CKPDA 598
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+YN + LCR + A L+ +M +C P+ T+
Sbjct: 599 ISYNSTLKGLCRAERWQDAEELVAEMLRN--KCTPNEVTF 636
>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g07290, mitochondrial; Flags: Precursor
gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 880
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Query: 124 RFFHFFHNEVTCKEMGIVFA----------RGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
+ F EVTC + ++ R GL D + E G +T T T
Sbjct: 251 KVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGE-----KGCQPSTRTYT 305
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
LIK L + GL+++A F M C+P+V+ Y V+I+ LCR G +A + +M
Sbjct: 306 VLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKD 365
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
R P V TY LI+ YCK G
Sbjct: 366 --RIFPSVITYNALINGYCKDG 385
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+A+ RM PD+ +YNV+I+ LCR G+ N A LL M F PD T+T
Sbjct: 424 KAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNC--FDIEPDCLTFTA 481
Query: 247 LISSYCKYG 255
+I+++CK G
Sbjct: 482 IINAFCKQG 490
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
L T ++ ++ +L + V E LA ++ + P V Y +++ L R G+ +
Sbjct: 543 LTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFR 602
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+LE M+L G C P+VY YTI+I+ C++G
Sbjct: 603 ILELMKLSG--CLPNVYPYTIIINGLCQFG 630
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 185 VNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
+ +AL F M K+ C P+ +Y+++I+ LC VG +A L +QM G C P T
Sbjct: 246 LRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKG--CQPSTRT 303
Query: 244 YTILISSYCKYGM 256
YT+LI + C G+
Sbjct: 304 YTVLIKALCDRGL 316
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ ++G VK L ++++ G LV + T T L+ L G + + MK
Sbjct: 555 MLSKGCKVKEELAMLGKINKLG---LVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSG 611
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+VY Y ++IN LC+ G +A LL M+ G P+ TYT+++ Y G
Sbjct: 612 CLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGV--SPNHVTYTVMVKGYVNNG 665
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI ++G V A M++ C+P+V +N ++ LCRVG KA LL++M
Sbjct: 373 TYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRM 432
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PD+ +Y +LI C+ G
Sbjct: 433 LDNGL--SPDIVSYNVLIDGLCREG 455
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 149 KGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
+GL D EM RG V T TV LI L +G + EA +M + R P V
Sbjct: 314 RGLIDKAFNLFDEMIPRGCKPNVHTYTV--LIDGLCRDGKIEEANGVCRKMVKDRIFPSV 371
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN +IN C+ G A LL ME C P+V T+ L+ C+ G
Sbjct: 372 ITYNALINGYCKDGRVVPAFELLTVMEKRA--CKPNVRTFNELMEGLCRVG 420
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L EG +N A M F PD + +INA C+ G + A L M G
Sbjct: 447 LIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKG 506
Query: 235 FRCPPDVYTYTILISSYCKYG 255
D T T LI CK G
Sbjct: 507 I--SLDEVTGTTLIDGVCKVG 525
>gi|414590862|tpg|DAA41433.1| TPA: hypothetical protein ZEAMMB73_769800 [Zea mays]
Length = 1295
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R V WDFL+ +S+ G + +I EG V++A+ F+ MK+
Sbjct: 912 LCRSRQVTSAWDFLQTLSQSGGP--CSNYCFNAVIHGFCCEGQVDKAIEVFHGMKKCGYV 969
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV++Y+++++ LC+ G+ K +LE+M G CP V +Y+ L+ CK G
Sbjct: 970 PDVHSYSILVDGLCKQGDLLKGYDMLEEMARNGI-CPNQV-SYSSLLHGLCKTG 1021
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-FRCRPDVYAYNVVINALCRVGNFN 221
NG T T L+ ++GLV EA RM Q P++ Y V+IN LC+ ++
Sbjct: 1106 NGLSPNIVTCTILVDSFSKQGLVGEAFLFLDRMHQSLGIVPNLCMYRVMINGLCKTNKYS 1165
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ M G+ PDV Y+I+I + K
Sbjct: 1166 GVWNVFADMIKRGY--VPDVVLYSIIIEGFVK 1195
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ N G+W+ +M +RG V ++ +I+ + + EAL +++M +
Sbjct: 1158 LCKTNKYSGVWNVFADMIKRGYVPDVVLYSI--IIEGFVKALKLQEALRLYHKMLDEGVK 1215
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+++ Y+ +IN LC +A L+ M G D YT +I+ YC+
Sbjct: 1216 PNIFTYSSLINGLCNDDRLPEAMGLIRDM--IGEDLLLDNVLYTSIIACYCR 1265
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 40/180 (22%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++KA E +H +++ + + + +G+ +KG +D L+EM+R NG +
Sbjct: 953 VDKAIEVFHGMKKCGYVPDVHSYSILVDGLCKQGDLLKG-YDMLEEMAR--NGICPNQVS 1009
Query: 172 VTCLIKVLGEEGLVNEALATF-----------------------------------YRMK 196
+ L+ L + G V AL F + M
Sbjct: 1010 YSSLLHGLCKTGQVALALKIFKNLQDHGFEHDQINYSIILHGCCQHLDLKAISDLWFDMI 1069
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PDVY Y +I ALCR N A + E M G P++ T TIL+ S+ K G+
Sbjct: 1070 HHNIAPDVYNYTSLIYALCRHRNLQDALGVFELMLENGL--SPNIVTCTILVDSFSKQGL 1127
>gi|15217608|ref|NP_171708.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806399|sp|O81908.2|PPR2_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g02060, chloroplastic; Flags: Precursor
gi|332189251|gb|AEE27372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 710
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+ I+ RG D EM RR G + T LI + +V+EA F M+
Sbjct: 180 LSILLKRGRTGMA-HDLFDEM-RRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMEL 237
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ C PDV YN +I+ LCR G A +L M P+V +YT L+ YC
Sbjct: 238 YHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYC 292
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Query: 118 FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL-VTTSTVTCLI 176
F+ WV F H E + M R N+ +FL + RR NG + + LI
Sbjct: 87 FFDWVSNK-GFSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLI 145
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
+ G GL E++ F MKQ P V +N +++ L + G A L ++M +
Sbjct: 146 RSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMR-RTYG 204
Query: 237 CPPDVYTYTILISSYCKYGM 256
PD YT+ LI+ +CK M
Sbjct: 205 VTPDSYTFNTLINGFCKNSM 224
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 148 VKGL-----WDFLKEMSRRGNGELVTTSTVTC----LIKVLGEEGLVNEALATFYRMKQF 198
+KGL +D +K++ GN T + C LIK + G ++ A+ F M
Sbjct: 323 IKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNM 382
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQM-----ELPGFRCPPDVYTYTILISSYCK 253
+ PD +Y+V+I LC F++A L ++ L C P Y + C
Sbjct: 383 KLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCA 442
Query: 254 YG 255
G
Sbjct: 443 NG 444
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
E L NE + + C+P AYN + LC G +A + Q+ G + PP
Sbjct: 408 ETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQDPP-- 465
Query: 242 YTYTILISSYCKYG 255
+Y LI+ +C+ G
Sbjct: 466 -SYKTLITGHCREG 478
>gi|242082131|ref|XP_002445834.1| hypothetical protein SORBIDRAFT_07g026590 [Sorghum bicolor]
gi|241942184|gb|EES15329.1| hypothetical protein SORBIDRAFT_07g026590 [Sorghum bicolor]
Length = 426
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
LW +M RG G ++ +T + +I G L ++A+ F R+ +F C YN +
Sbjct: 130 LWSLASDM--RGLGLPLSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNAL 187
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ALC GNF A LL +M G PD T++ L+ S+C G
Sbjct: 188 LDALCANGNFTGAYKLLRRMARKG--VAPDRATFSTLVDSWCAAG 230
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 5/143 (3%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
++A E ++ + RF EV + + A GN G + L+ M+R+G +T
Sbjct: 163 DQAVEVFNRLPRFGCPQTTEVYNALLDALCANGN-FTGAYKLLRRMARKGVAP--DRATF 219
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ L+ G +NEA A M RP V +++++ L R G+ +A+ +M
Sbjct: 220 STLVDSWCAAGKLNEAQAFLDDMASRGFRPPVRGRDLLVDGLVRAGHLEEAKAFALRMTK 279
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G PDV T+ L + C G
Sbjct: 280 EGIL--PDVATFNSLAEALCNAG 300
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL +M+ RG V + L+ L G + EA A RM + PDV +N + A
Sbjct: 238 FLDDMASRGFRPPVRGRDL--LVDGLVRAGHLEEAKAFALRMTKEGILPDVATFNSLAEA 295
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYT--YTILISSYCKYG 255
LC G+ + A LL G CP +T Y +I + CK G
Sbjct: 296 LCNAGDVDFAVALLADASSRGL-CPDISHTSLYAAIIKALCKAG 338
>gi|125537408|gb|EAY83896.1| hypothetical protein OsI_39118 [Oryza sativa Indica Group]
Length = 693
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 13/146 (8%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+ +A EF+ W +R + + H + M + ++R ++ L M + G ++
Sbjct: 110 VRRAFEFFRWADRQWRYRHAPEFAQLM-LSYSRAGKLRSAMRVLHLMQKDGCAPDISICN 168
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ + VL G V++AL RM++ PDVY YN +I LC AR +++ ME
Sbjct: 169 MA--VNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLC------GARRVVDAME 220
Query: 232 LPGFR----CPPDVYTYTILISSYCK 253
+ G CPPD +Y ++S CK
Sbjct: 221 MIGVMLQNGCPPDKISYYTVMSFLCK 246
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + EA M C+PDV Y+ V++ CR+G ++AR +++ M C P+
Sbjct: 319 GRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKND--CKPNTV 376
Query: 243 TYTILISSYCKYG 255
T+T L++ CK G
Sbjct: 377 THTALLNGLCKVG 389
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 9/138 (6%)
Query: 124 RFFHFFHNEVTCKEMGI------VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK 177
R H + ++ I V V +F + M R G V T CLIK
Sbjct: 150 RVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYT--YNCLIK 207
Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
L V +A+ M Q C PD +Y V++ LC+ + R LL++M
Sbjct: 208 GLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAG-L 266
Query: 238 PPDVYTYTILISSYCKYG 255
PD TY +LI K+G
Sbjct: 267 FPDQVTYNVLIHGLAKHG 284
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 14/169 (8%)
Query: 88 DNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN 147
D + NVL+ G A + + ++A EF E F +EV + F
Sbjct: 269 DQVTYNVLIHGLAKHGHA-------DEALEFLRESE-GKRFRVDEVGYSAIVHSFCLNGR 320
Query: 148 VKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
+ + + EM +G ++VT STV +GE +++A M + C+P+
Sbjct: 321 MAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGE---LDQARKMMKHMYKNDCKPNTVT 377
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ ++N LC+VG ++A LL + E + P D+ TY++++ + + G
Sbjct: 378 HTALLNGLCKVGKTSEAWELLNKSEEEWW-TPSDI-TYSVVMHGFRREG 424
>gi|298708358|emb|CBJ48421.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 327
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
N + T + LG+ G EALAT RM+ PDVY++N I+A R + +
Sbjct: 23 NAGRLDAKTYNVALSALGKCGRWKEALATLDRMRSKGVPPDVYSFNSAISACGRAAKWKQ 82
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A LL +ME G PPD+++Y I++ K G
Sbjct: 83 ALALLSEMEREGSDVPPDLFSYNGAINAVAKDG 115
>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI+ L G V+ A F M+ F C PDV YN +IN LC+ + L +
Sbjct: 178 TWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFK 237
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+++ C PD+ TYT +IS +CK G
Sbjct: 238 EIQSRS-DCSPDIVTYTSIISGFCKSG 263
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ VL ++ V+EA+ F + PD + +N++I LCRVG ++A + + ME
Sbjct: 149 LLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDME--S 206
Query: 235 FRCPPDVYTYTILISSYCK 253
F C PDV TY LI+ CK
Sbjct: 207 FGCLPDVVTYNTLINGLCK 225
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LI L +E +NEA ++K P + YN VI+ C+ GN ++ +L
Sbjct: 353 TVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVIL 412
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++ME RC PD T+TILI +C G
Sbjct: 413 KEMEEK--RCDPDKVTFTILIIGHCVKG 438
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 4/145 (2%)
Query: 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS 170
G+++A E + +E F + VT + + N V+ + KE+ R +
Sbjct: 193 GVDRAFEVFKDMESF-GCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCS-PDIV 250
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I + G + EA F M + +P+V +NV+I+ ++GN +A + +M
Sbjct: 251 TYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKM 310
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
F C DV T+T LI YC+ G
Sbjct: 311 AY--FDCSADVVTFTSLIDGYCRAG 333
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + +K + +EM R G V T V LI G+ G + EA A + +M F C
Sbjct: 259 FCKSGKMKEASNLFEEMMRSGIQPNVITFNV--LIDGFGKIGNIAEAEAMYRKMAYFDCS 316
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
DV + +I+ CR G N M+ P VYTY +LI++ CK
Sbjct: 317 ADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNV--SPTVYTYAVLINALCK 366
>gi|125579703|gb|EAZ20849.1| hypothetical protein OsJ_36487 [Oryza sativa Japonica Group]
Length = 607
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T+ LI G V+ A F +M CRPD + YN +++ +CR G ++A L+
Sbjct: 187 STAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLV 246
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
QME G R P+V+TYT+L+ +C G
Sbjct: 247 RQMEGEGIR--PNVFTYTMLVDGFCNAG 272
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 7/141 (4%)
Query: 118 FYHWVERFFHFFHNEVTCKE--MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCL 175
Y W RF F + + +G ++ RG V + E+ RG G V+ V L
Sbjct: 103 LYVWASRFGAHFARDGGVRRALVGALWRRGPVVLS-GRLVAEV--RGCGCEVSEELVCAL 159
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
++ G GL A F +M + RP YN +I A R G + A +QM P
Sbjct: 160 VESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQM--PAD 217
Query: 236 RCPPDVYTYTILISSYCKYGM 256
C PD +TY L+ C+ G+
Sbjct: 218 GCRPDHFTYNSLVHGVCRRGI 238
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L + + +I + G V++A M+ P++ +N +I+ ++GN + A
Sbjct: 428 GLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNA 487
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ +L+ + GF PD+ T+T LI C
Sbjct: 488 KVVLKMLMEHGFM--PDIITFTSLIDGLC 514
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ + G+V+EA+ +M+ RP+V+ Y ++++ C G +A +L++M
Sbjct: 225 TYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKM 284
Query: 231 ELPGFRCPPDVYTYTILI 248
+ G P TY L+
Sbjct: 285 KEKGV--APSEATYRTLV 300
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V +YN+VI+ + G +KA ++++M+ GF P++ T+ LIS Y K G
Sbjct: 433 VMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFL--PNLVTFNTLISGYSKLG 482
>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Brachypodium distachyon]
Length = 637
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I G GLV++A F M+ C+PDV YN +IN L + G+ ++A L ++M
Sbjct: 465 TYNIMISSYGRVGLVDKASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEM 524
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ G+ PDV+TY+ LI + K
Sbjct: 525 QEKGY--DPDVFTYSTLIECFGK 545
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F +MK PD++ YN++I++ RVG +KA L E+ME C PDV TY LI+
Sbjct: 451 FDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEMEASS--CKPDVITYNTLINCL 508
Query: 252 CKYG 255
K G
Sbjct: 509 GKNG 512
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T C+++ V++ + M + + D++AYN++++AL + G ++A + E M
Sbjct: 188 TYKCIVQAHLRSREVSKGFEVYEEMHRKGYKLDIFAYNMLLDALAKAGMVDQAYQVFEDM 247
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ C PD YTYTILI K G
Sbjct: 248 KQK--YCVPDAYTYTILIRMSGKTG 270
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++VL G EA+ + M + D+ YN+V +AL ++ + L ++M+ G
Sbjct: 399 MLEVLCNSGKTLEAIDLLHMMPEKGIDTDIGMYNMVFSALGKLKQVSFISTLFDKMKASG 458
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
PD++TY I+ISSY + G+
Sbjct: 459 I--APDLFTYNIMISSYGRVGL 478
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
KEM +G + ++ T ST LI+ G+ V+ A + F M C P++ YN++++
Sbjct: 520 LFKEMQEKGYDPDVFTYST---LIECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNILLD 576
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
L R G +A E M+ G PD TY+IL
Sbjct: 577 CLERRGKTAEAHKHYETMKQQGL--TPDSITYSIL 609
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI LG+ G ++EA F M++ PDV+ Y+ +I + + A L ++M
Sbjct: 500 TYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEM 559
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P++ TY IL+ + G
Sbjct: 560 IAEG--CIPNIVTYNILLDCLERRG 582
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R V ++ +EM R+G + L+ L + G+V++A F MKQ C PD
Sbjct: 198 RSREVSKGFEVYEEMHRKGYK--LDIFAYNMLLDALAKAGMVDQAYQVFEDMKQKYCVPD 255
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
Y Y ++I + G K ++M G C ++ Y +I + K M
Sbjct: 256 AYTYTILIRMSGKTGQTYKFLSFFDEMVSRG--CALNLIAYNTVIEALGKNKM 306
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 154 FLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
F EM RG L+ +TV I+ LG+ +V++ + +M + C+P+ + Y++ ++
Sbjct: 278 FFDEMVSRGCALNLIAYNTV---IEALGKNKMVDKVIFVLSKMIESDCQPNQFTYSLTLD 334
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L G ++ L E +++ +Y+Y L+ S CK G
Sbjct: 335 ILATEGQLHR---LNEVLDICDRYLNKSIYSY--LVKSLCKSG 372
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI++ G+ G + L+ F M C ++ AYN VI AL + +K F+L +M
Sbjct: 258 TYTILIRMSGKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEALGKNKMVDKVIFVLSKM 317
Query: 231 ELPGFRCPPDVYTYTILIS 249
C P+ +TY++ +
Sbjct: 318 IESD--CQPNQFTYSLTLD 334
>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 671
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L E+GLV A+ F M C+PD++ YN V+ LCR + A L+ M
Sbjct: 488 TYSSLINGLSEQGLVESAIELFQSMP---CKPDIFGYNAVLKGLCRAARWEDAGELISNM 544
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
CPP+ T+ ILI+S C+ G+
Sbjct: 545 ARKD--CPPNEITFNILINSLCQKGL 568
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L ++GLV+ A+ F +M ++ PD++ YN +IN G + AR LL M
Sbjct: 555 TFNILINSLCQKGLVDRAIEVFEQMPKYGSTPDIFTYNALINGFSEQGRLDDARRLLSTM 614
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C PD +Y + C+
Sbjct: 615 S-----CKPDAVSYNSALKGLCR 632
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 148 VKGL-----WDFLKEM---SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+KGL WD +E+ R + L+ T LI L + G VN A+ F +M ++
Sbjct: 423 LKGLCRAERWDDAEELIVQMLREDCPLIEM-TFNILIDSLCQNGRVNNAIEVFEQMPKYG 481
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C PD+ Y+ +IN L G A L + M C PD++ Y ++ C+
Sbjct: 482 CTPDIVTYSSLINGLSEQGLVESAIELFQSMP-----CKPDIFGYNAVLKGLCR 530
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 14/130 (10%)
Query: 131 NEVTCKEMGIVF---ARGNNVKGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEG 183
N + CK I + +G + W+ + EM R+ L +T + L L + G
Sbjct: 306 NGMLCKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDC--LPNEATFSMLTSCLCQNG 363
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
LV+ A+ +M ++ CRPD YN +I + G + A LL M C PDV +
Sbjct: 364 LVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSMP-----CSPDVIS 418
Query: 244 YTILISSYCK 253
+ + C+
Sbjct: 419 FNAALKGLCR 428
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI E+G V++AL M C PDV ++N + LCR ++ A L+ QM
Sbjct: 390 LIYSFSEQGRVDDALKLLNSMP---CSPDVISFNAALKGLCRAERWDDAEELIVQMLRED 446
Query: 235 FRCPPDVYTYTILISSYCKYG 255
CP T+ ILI S C+ G
Sbjct: 447 --CPLIEMTFNILIDSLCQNG 465
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
I+ + GL++ A+ RM Q+ C PDV Y+ ++N G + A LL G
Sbjct: 254 IRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRVDDAIELLN-----GM 308
Query: 236 RCPPDVYTYTILISSYC 252
C P+ Y + C
Sbjct: 309 LCKPNTICYNAALKGLC 325
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI G + +ALA M PD Y YN V+ LC + A L+ +M
Sbjct: 182 TYTTLINGYCRSGRLADALALIASMP---VAPDTYTYNTVLMGLCGARQWEDAEALMAEM 238
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
CPP+ T+ I ++C+ G+
Sbjct: 239 VR--NHCPPNEVTFATQIRAFCQNGL 262
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+A A M + C P+ + I A C+ G ++A LL++M P + C PDV Y+
Sbjct: 230 DAEALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRM--PQYGCTPDVVIYST 287
Query: 247 LISSYCKYG 255
L++ + + G
Sbjct: 288 LVNGFSEQG 296
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI E+G +++A M C+PD +YN + LCR + +A ++ +M
Sbjct: 590 TYNALINGFSEQGRLDDARRLLSTMS---CKPDAVSYNSALKGLCRAERWKEAEEVVAEM 646
Query: 231 ELPGFRCPPDVYTY 244
+CPP+ T+
Sbjct: 647 LR--MKCPPNEVTF 658
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLV 185
H NEVT F + + L M + G ++V ST L+ E+G V
Sbjct: 242 HCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYST---LVNGFSEQGRV 298
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
++A+ M C+P+ YN + LC + L+ +E+ C P+ T++
Sbjct: 299 DDAIELLNGML---CKPNTICYNAALKGLCIAQRWEDVGQLI--VEMVRKDCLPNEATFS 353
Query: 246 ILISSYCKYGM 256
+L S C+ G+
Sbjct: 354 MLTSCLCQNGL 364
>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
Length = 688
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ ARG VK ++D EM G + T T +I L + GLV A F M+
Sbjct: 285 LLARGC-VKKVYDLQLEMENEGI--MPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGL 341
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV YN ++N C+ GN +A L + G P V TY I I YC+ G
Sbjct: 342 LPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGL--APTVLTYNIRIDGYCRLG 394
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G L T L+ + G + EAL F +++ P V YN+ I+ CR+G+
Sbjct: 337 RAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDL 396
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILI 248
+AR L E+M G C P+V TYTIL+
Sbjct: 397 EEARILKEEMGEQG--CLPNVCTYTILM 422
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
+M NG T TCLI E GL+ EA F M P + V+I+A CR
Sbjct: 508 QMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCR 567
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
GN A +M G P+ TY +LI + C+ G
Sbjct: 568 RGNLYSAYGWFRKMLEEGVE--PNEITYNVLIHALCRMG 604
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G L + T T +I G + A F +M + P+ YNV+I+ALCR+G
Sbjct: 549 DGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQL 608
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A +M G + YTYT+LI CK G
Sbjct: 609 ASHHFHEMLERGL--VANKYTYTLLIDGNCKVG 639
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+F EM +G + +T C +LG+ + AL + D YN++I
Sbjct: 436 EFFDEMLSKGLQPDCFAYNTRICAELILGD---IARALELREVLMLEGISSDTVTYNILI 492
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ LC+ GN A+ L QM++ PD TYT LI ++C+ G+
Sbjct: 493 HGLCKTGNLKDAKEL--QMKMVSNGLQPDCITYTCLIHAHCERGL 535
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 156 KEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+EM+ G V C +++ L + ++ A M Q P + YN ++++
Sbjct: 158 REMASHG----VAPDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDS 213
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G +K LL++ME G C P+ TY ++I+ + G
Sbjct: 214 FLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKG 255
>gi|255585033|ref|XP_002533225.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526957|gb|EEF29157.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 605
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G V T+T LI E ++EA+ +MK F C PD +YN +++ LC+ G N+A
Sbjct: 43 GVEVNTNTFNILICGCCIENKLSEAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLNEA 102
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R LL M+ G P+ T+ IL+S YCK G
Sbjct: 103 RDLLLDMKNNGLF--PNRNTFNILVSGYCKLG 132
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 113 NKATEFYHWVERFFHF--FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS 170
NK +E + + HF F + V+ + V + + D L +M + NG +
Sbjct: 62 NKLSEAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDM--KNNGLFPNRN 119
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ + G + EA M + PDV Y +I LC+ G ++A L ++M
Sbjct: 120 TFNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEM 179
Query: 231 ELPGFRCPPDVYTYTILISS 250
E + P V TY +LI+
Sbjct: 180 E--NLKLLPHVVTYNMLING 197
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L++ L EG++++AL F D +N +I+ LC G F +A LL +M
Sbjct: 431 TCNILVRGLCTEGMLDKALKLFKTWISKGKAIDAVTFNTIISGLCEEGRFEEAFDLLAEM 490
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E + PD YT+ ++S+ G
Sbjct: 491 EEK--KLGPDCYTHNAILSALADAG 513
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
N L T T LI L ++G ++EA M+ + P V YN++IN + K
Sbjct: 147 NNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEMENLKLLPHVVTYNMLINGCFECSSSLK 206
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L+++ME G + P+ TY +++ Y K G
Sbjct: 207 GFELIDEMEGKGVK--PNAVTYNVVVKWYVKEG 237
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 152 WDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
WD +KE E++ + T +I L G ++++ + + PD YN +
Sbjct: 347 WDEMKEK------EIIPSIITYGTMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYNTI 400
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
I CR G +KA +M F+ PD++T IL+ C GM
Sbjct: 401 ILGYCREGQVDKAFHFRNKMVKKSFK--PDLFTCNILVRGLCTEGM 444
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 15/114 (13%)
Query: 122 VERFFHFFHNEV---------TCKEMGIVFARGNNVKGLWDFLKEMSRR--GNGELVTTS 170
V++ FHF + V TC + RG +G+ D ++ + G+ +
Sbjct: 410 VDKAFHFRNKMVKKSFKPDLFTCN----ILVRGLCTEGMLDKALKLFKTWISKGKAIDAV 465
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
T +I L EEG EA M++ + PD Y +N +++AL G +A
Sbjct: 466 TFNTIISGLCEEGRFEEAFDLLAEMEEKKLGPDCYTHNAILSALADAGRMKEAE 519
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P+ YNVV+ + G + A L +ME GF PD T+ L + YCK G
Sbjct: 220 KPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGF--SPDCVTFNTLSNGYCKAG 272
>gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 696
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T+ LI G V+ A F +M CRPD + YN +++ +CR G ++A L+
Sbjct: 187 STAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLV 246
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
QME G R P+V+TYT+L+ +C G
Sbjct: 247 RQMEGEGIR--PNVFTYTMLVDGFCNAG 272
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L +++A F M ++ RP+ YNV+++ LC G+ NKA LL +M
Sbjct: 505 TFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKM 564
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
++ G PD Y++ LI S+C+
Sbjct: 565 KIDGV--TPDAYSFNALILSFCR 585
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 7/141 (4%)
Query: 118 FYHWVERFFHFFHNEVTCKE--MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCL 175
Y W RF F + + +G ++ RG V + E+ RG G V+ V L
Sbjct: 103 LYVWASRFGAHFARDGGVRRALVGALWRRGPVVLS-GRLVAEV--RGCGCEVSEELVCAL 159
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
++ G GL A F +M + RP YN +I A R G + A +QM P
Sbjct: 160 VESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQM--PAD 217
Query: 236 RCPPDVYTYTILISSYCKYGM 256
C PD +TY L+ C+ G+
Sbjct: 218 GCRPDHFTYNSLVHGVCRRGI 238
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L G VN+A+ +MK PD Y++N +I + CR+ +KA + M
Sbjct: 540 TYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDM 599
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
F PD YTY LI + C
Sbjct: 600 VR--FGVVPDSYTYNSLIKALC 619
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V + +KEM +G L T LI + G V+ A + +
Sbjct: 443 FVKAGAVDKAEEIVKEMQDKGF--LPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFM 500
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ + +I+ LC + A E+M G R P+ TY +L+ + C G
Sbjct: 501 PDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVR--PNAQTYNVLMHTLCSAG 552
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ + G+V+EA+ +M+ RP+V+ Y ++++ C G +A +L++M
Sbjct: 225 TYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKM 284
Query: 231 ELPGFRCPPDVYTYTILI 248
+ G P TY L+
Sbjct: 285 KEKGV--APSEATYRTLV 300
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L + + +I + G V++A M+ P++ +N +I+ ++GN + A
Sbjct: 428 GLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNA 487
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ +L+ + GF PD+ T+T LI C
Sbjct: 488 KVVLKMLMEHGFM--PDIITFTSLIDGLC 514
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V +YN+VI+ + G +KA ++++M+ GF P++ T+ LIS Y K G
Sbjct: 433 VMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFL--PNLVTFNTLISGYSKLG 482
>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Query: 115 ATEFYHWV---ERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
A F+ W +++ H V+ E+ A ++ ++ LK+ G L+T S
Sbjct: 131 AVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKD-----RGLLMTESA 185
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
LIK G GLV E L + RMK+ P +Y YN ++N L A + E M+
Sbjct: 186 ANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMD 245
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
G + PD TY I+I YCK G
Sbjct: 246 --GGKIVPDTVTYNIMIKGYCKAG 267
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
R ++ L+DF R G + LI LG+ G + +A F M + C
Sbjct: 407 GRLDDGMELFDFC-----RNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCAR 461
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
D Y YN +I+AL + G ++A L +ME G C VYT+TILI K
Sbjct: 462 DSYCYNAIIDALAKHGKIDQALALFGRMEEEG--CDQTVYTFTILIDGLFK 510
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
EA A F M Q CR +V Y +I++ + G+ +A L E+M+ GF PD TY++
Sbjct: 341 EAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFE--PDAVTYSV 398
Query: 247 LISSYCKYG 255
L++ CK G
Sbjct: 399 LVNGLCKSG 407
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 42/118 (35%), Gaps = 37/118 (31%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN----------- 221
T LI + G + EA+ F RMK PD Y+V++N LC+ G +
Sbjct: 362 TALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRN 421
Query: 222 ------------------------KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A L E+M G C D Y Y +I + K+G
Sbjct: 422 KGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKG--CARDSYCYNAIIDALAKHG 477
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 163 NGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G++V T T +IK + G + +A+ F M+ +PD Y +I A +F+
Sbjct: 246 GGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFD 305
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
L +ME G PP ++Y+++I CK
Sbjct: 306 TCLSLYLEMEERGLEIPP--HSYSLVIGGLCK 335
>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 713
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L +EG + EA + F RMK+ C PDV +N +I+ + G ++ L+E+M
Sbjct: 190 TFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEM 249
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG-MQT 258
G C DV TY LI+ +CK+G M+T
Sbjct: 250 RRSG--CKADVVTYNALINCFCKFGRMET 276
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + ++ + + M R G +VT ST + +EGLV EA+ F +M+
Sbjct: 268 FCKFGRMETAYGYFAAMKREGVMANVVTFST---FVDAFCKEGLVREAMKLFAQMRVRGM 324
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ + Y +I+ C+ G + A LL++M G P +V TYT+L+ CK
Sbjct: 325 ALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGV--PLNVVTYTVLVDGLCK 375
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 33/118 (27%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRC---------------------------- 200
S V L+ VL + GL+++A+ R+++ R
Sbjct: 122 ASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFE 181
Query: 201 ---RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V+ +N+VI+ LC+ G +AR L +M+ G C PDV T+ LI Y K G
Sbjct: 182 QLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMG--CLPDVVTFNSLIDGYGKCG 237
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + G ++EA++ F +M+ P+V AY +++ LC+ G N+A L +M
Sbjct: 505 TYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEM 564
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G D YT L+ Y K G
Sbjct: 565 VHKGM--SLDKVVYTALLDGYLKQG 587
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE + AR L+ +KEM G L T LI G+ G ++E
Sbjct: 199 CKEGELAEARS-----LFSRMKEM-----GCLPDVVTFNSLIDGYGKCGELDEVEQLVEE 248
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M++ C+ DV YN +IN C+ G A M+ G +V T++ + ++CK
Sbjct: 249 MRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVM--ANVVTFSTFVDAFCKE 306
Query: 255 GM 256
G+
Sbjct: 307 GL 308
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
+ K L + E N + TT C + G V EA+A ++ +P+V
Sbjct: 450 DEAKSLLTKMDESGLEPNYIIYTTMMDACF-----KSGKVPEAIAMLQKILDSGFQPNVI 504
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +I+ LC+ G+ ++A +M G P+V YT L+ CK G
Sbjct: 505 TYCALIDGLCKAGSIDEAISHFNKMRDLGL--DPNVQAYTALVDGLCKNG 552
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVT-TSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ + + + ++EM R G ++VT + + C K G + A F MK+
Sbjct: 233 YGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKF----GRMETAYGYFAAMKREG 288
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+V ++ ++A C+ G +A L QM + G + +TYT LI CK G
Sbjct: 289 VMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGM--ALNEFTYTCLIDGTCKAG 342
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ L + G +NEA+ F M D Y +++ + GN + A L +M
Sbjct: 542 TALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMID 601
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
G + D++ YT IS +C M
Sbjct: 602 SGLQL--DLFCYTCFISGFCNLNM 623
>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 665
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEA 188
NEVT + F RG V+ + L MS G T +T C +I + ++G V++A
Sbjct: 276 NEVTFDMLVRFFCRGGMVERAIEVLDRMSEHG----CTANTTLCNIVINSICKQGRVDDA 331
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
M + C PD +Y V+ LCR G + A+ LL +M CPP+ T+ I
Sbjct: 332 FEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKN--CPPNEVTFNTFI 389
Query: 249 SSYCKYGM 256
C+ G+
Sbjct: 390 CILCQKGL 397
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ L + G V +AL+ M + C+P V Y V++ A+C+ F +A +L++M
Sbjct: 139 TYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEM 198
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C P++ TY ++I+ C+
Sbjct: 199 RAKG--CTPNIVTYNVIINGMCR 219
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 148 VKGLWD---------FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
++GL D L +M RR V T TV L++ + + +A+ M+
Sbjct: 144 IRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTV--LLEAVCKSSGFGQAMKVLDEMRAK 201
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C P++ YNV+IN +CR + AR +L ++ GF+ PD +YT ++ C
Sbjct: 202 GCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQ--PDTVSYTTVLKGLC 253
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 153 DFLKEMSR-----RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVYA 206
D L E +R GE T LI+ L G ++A A R + P DV+A
Sbjct: 49 DDLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDA-ARVLRTAEGSGAPVDVFA 107
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN ++ CR G + AR L+ M + PPD YTYT LI C G
Sbjct: 108 YNTLVAGYCRYGRLDAARRLIASMPV-----PPDAYTYTPLIRGLCDRG 151
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 122 VERFFHFFHN--EVTCKEMGIVFA---RGNNVKGLWD----FLKEMSRRGNG-ELVTTST 171
V+ F F +N C I + +G G W+ L EM R+ VT +T
Sbjct: 328 VDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNT 387
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
C +L ++GL+++A+ +M ++ C + YN ++N C G + A L
Sbjct: 388 FIC---ILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNS-- 442
Query: 232 LPGFRCPPDVYTYTILISSYC 252
LP C P+ TYT L++ C
Sbjct: 443 LP---CEPNTITYTTLLTGLC 460
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T + ++ VL E + EA+ F+ ++ RP YN +++ALC+ ++A
Sbjct: 549 GISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRA 608
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
M C P+ TY ILI + G+
Sbjct: 609 IDFFAHM--VSNSCMPNESTYVILIEGLAREGL 639
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y Y +I LC G A LL+ M C P V TYT+L+ + CK
Sbjct: 135 PDAYTYTPLIRGLCDRGRVGDALSLLDDM--LRRECQPSVVTYTVLLEAVCK 184
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 149 KGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
KGL D +++M G V T L+ +G V+ AL F C P+
Sbjct: 395 KGLIDQAILLIEQMPEYGCS--VGIVTYNALVNGFCVQGRVDSALELF---NSLPCEPNT 449
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y ++ LC + A LL +M CP +V T+ +L+S +C+ G
Sbjct: 450 ITYTTLLTGLCHAERLDAAAELLAEMMQND--CPLNVVTFNVLVSFFCQKG 498
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E CK G G +K L EM +G + T V +I + E V++A
Sbjct: 180 EAVCKSSGF----GQAMK----VLDEMRAKGCTPNIVTYNV--IINGMCREDRVDDARQI 229
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
R+ + +PD +Y V+ LC + L E+ C P+ T+ +L+ +
Sbjct: 230 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLF--CEMVENNCVPNEVTFDMLVRFF 287
Query: 252 CKYGM 256
C+ GM
Sbjct: 288 CRGGM 292
>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Cucumis sativus]
Length = 665
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E TCKE G+ G +K L EM +G V T V LI + +EG ++EA+
Sbjct: 255 EATCKESGV----GQAMK----LLDEMRDKGCKPDVVTYNV--LINGICKEGRLDEAIRF 304
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
M + C+P+V +N+++ ++C G + A L +M G C P V T+ ILI+
Sbjct: 305 LNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKG--CSPSVVTFNILINFL 362
Query: 252 CKYGM 256
C+ G+
Sbjct: 363 CRKGL 367
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ +E V +A+ M+ C+PDV YNV+IN +C+ G ++A L M
Sbjct: 249 TYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHM 308
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
P + C P+V T+ I++ S C G
Sbjct: 309 --PSYGCQPNVITHNIILRSMCSTG 331
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT +T+ ++ L + G + EA+ R Q C PDV Y ++I A C+ +A
Sbjct: 211 DVVTYNTI---LRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAM 267
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL++M G C PDV TY +LI+ CK G
Sbjct: 268 KLLDEMRDKG--CKPDVVTYNVLINGICKEG 296
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL EM R+G V T + LI L +GL+ A+ +M Q C P+ +YN +++A
Sbjct: 339 FLAEMIRKGCSPSVVTFNI--LINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHA 396
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ +A L+ M G C PD+ TY L+++ CK G
Sbjct: 397 LCKDKKMERAIEYLDIMVSRG--CYPDIVTYNTLLTALCKDG 436
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
Query: 122 VERFFHFFHNEVTCKEMGIVFARGNNVKGL------WDFLKEMS-RRGNGELVTTSTVTC 174
+E F F + V ++ + A + ++GL W + M +G + T
Sbjct: 126 LEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNV 185
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE-QMELP 233
LI + G + AL RM PDV YN ++ LC G +A +L+ QM+
Sbjct: 186 LISGYCKTGEIGSALQLLDRMS---VSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQR- 241
Query: 234 GFRCPPDVYTYTILISSYCK 253
C PDV TYTILI + CK
Sbjct: 242 --ECYPDVITYTILIEATCK 259
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
++L M RG ++VT +T L+ L ++G V+ A+ ++ C P + YN VI
Sbjct: 408 EYLDIMVSRGCYPDIVTYNT---LLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVI 464
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ L +VG + A LL++M+ G + PD+ TY+ L+ + G
Sbjct: 465 DGLSKVGKTDDAIKLLDEMKGKGLK--PDIITYSTLVGGLSREG 506
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ + FL++M RG ++ T LI+ L + G +A ++
Sbjct: 120 LVRNGELEEGFKFLEDMVCRG--DIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAV 177
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV YNV+I+ C+ G A LL++M + PDV TY ++ + C G
Sbjct: 178 PDVITYNVLISGYCKTGEIGSALQLLDRMSV-----SPDVVTYNTILRTLCDSG 226
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L EM +G +++T ST L+ L EG V+EA+A F+ +++ +P+ YN ++
Sbjct: 479 LLDEMKGKGLKPDIITYST---LVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIML 535
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC+ +A L M G C P +Y ILI G+
Sbjct: 536 GLCKARQTVRAIDFLAYMVARG--CKPTETSYMILIEGLAYEGL 577
>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Glycine max]
Length = 628
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 26/188 (13%)
Query: 68 RQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFH 127
R++G R L +R+L + D G AYR FY W +
Sbjct: 88 RESGVVVRPGLTERVLNRCGD--------AGNLAYR--------------FYSWASKQSG 125
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187
+ K M V +R +W ++EM R+ N L+T L++ +V++
Sbjct: 126 HRLDHDAYKAMIKVLSRMRQFGAVWALIEEM-RQENPHLITPQVFVILMRRFASARMVHK 184
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ M + C PD Y + +++AL + G+ +A L E++ +R P V +T L
Sbjct: 185 AVQVLDEMPNYGCEPDEYVFGCLLDALRKNGSVKEAASLFEELR---YRWKPSVKHFTSL 241
Query: 248 ISSYCKYG 255
+ +CK G
Sbjct: 242 LYGWCKEG 249
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 35/147 (23%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+A+ + + +D LKEM R+G T+ TV LI+ L + + EA F M++ C+
Sbjct: 280 YAQADKMGDAYDLLKEMRRKGCEPNATSYTV--LIQSLCKHERLEEATRVFVEMQRNGCQ 337
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQM------------------------------- 230
D+ Y+ +I+ C+ G + LL++M
Sbjct: 338 ADLVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMVAHEKKEELEECKEL 397
Query: 231 --ELPGFRCPPDVYTYTILISSYCKYG 255
E+ C PD+ Y +I CK G
Sbjct: 398 VNEMQKIGCAPDLSIYNTVIRLACKLG 424
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ +EG + EA +MK PD+ YN ++ + A LL++M
Sbjct: 239 TSLLYGWCKEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRR 298
Query: 233 PGFRCPPDVYTYTILISSYCKY 254
G C P+ +YT+LI S CK+
Sbjct: 299 KG--CEPNATSYTVLIQSLCKH 318
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M++ C PD+ YN VI C++G + L +ME G P + T+ I+I+ + +
Sbjct: 401 MQKIGCAPDLSIYNTVIRLACKLGEVKEGVRLWNEMESSGL--SPSIDTFVIMINGFLEQ 458
Query: 255 G 255
G
Sbjct: 459 G 459
>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 735
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
KA ++ V++ F H +T K M + L EM + L+ V+
Sbjct: 22 KALSIFNSVKKEDGFKHTFLTYKRMIEKLGFHGEFDAMERVLMEMRLNVDNSLLEGVYVS 81
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
+ + G +G V EA+ F RM + C P +++YN ++N L G FN+A + +M+
Sbjct: 82 AM-RNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHE 140
Query: 234 GFRCPPDVYTYTILISSYCK 253
G PDV T+TI I S+C+
Sbjct: 141 GI--APDVCTFTIRIKSFCR 158
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LIK L ++GLV +AL M + PD++ YN+VIN LC++G + A LL G
Sbjct: 369 LIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKG 428
Query: 235 FRCPPDVYTYTILISSYCK 253
+ PD++T+ LI YCK
Sbjct: 429 YL--PDIFTFNTLIDGYCK 445
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFR 199
+ V D L+E+ RG + V+ TV I G ++EA F RM +Q+R
Sbjct: 513 LCKARKVTEALDLLEEIRNRGLIPDPVSFGTV---ISGFCNNGDLDEAYQLFRRMEQQYR 569
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V YN++INA + + A+ L +M G C PD YTY ++I +CK G
Sbjct: 570 ICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKG--CDPDSYTYRVMIDGFCKVG 623
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFL 226
T +T +I E+ ++ A F+ M C PD Y Y V+I+ C+VGN N FL
Sbjct: 573 TVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFL 632
Query: 227 LEQMELPGFRCPPDVYTYTILISSYC 252
L+++E+ GF P + T+ +I+ C
Sbjct: 633 LKEIEI-GF--VPSLTTFGRVINCLC 655
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI + ++G ++ ALA F +P + YN +I L + G KA L+ M
Sbjct: 330 TYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDM 389
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PD++TY ++I+ CK G
Sbjct: 390 SKEGM--SPDIWTYNLVINGLCKMG 412
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+ + TF + + C P++ YN++I +LC+ +A LLE++ G PD ++
Sbjct: 486 DVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGL--IPDPVSFGT 543
Query: 247 LISSYCKYG 255
+IS +C G
Sbjct: 544 VISGFCNNG 552
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
G V EA ++M PD + YN +I +VG A +L+ + GF P
Sbjct: 269 GANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGF--VP 326
Query: 240 DVYTYTILISSYCKYG 255
D +TY LI C+ G
Sbjct: 327 DEFTYCSLIIGVCQDG 342
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR-CPPDVYT 243
++ A+ M PDV YN ++N LC+ K ++E ++ + C P++ T
Sbjct: 449 MDNAIGILDSMWSHGVTPDVITYNSILNGLCKAA---KPEDVMETFKMIMEKGCLPNIIT 505
Query: 244 YTILISSYCK 253
Y ILI S CK
Sbjct: 506 YNILIESLCK 515
>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Brachypodium distachyon]
Length = 651
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+F R + ++L+EM R G + T +I GL+ EAL M F C
Sbjct: 308 LFTRRGEMDHAAEYLREM--REFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGC 365
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV YN ++N LC+ + A LL +M+ G PPD+ T+T LI YC+ G
Sbjct: 366 LPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGV--PPDLCTFTTLIHGYCRDG 418
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L EM RG T T LI +G + +AL F + R RPD+ YN +I+
Sbjct: 390 ELLNEMKERGVPP--DLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLID 447
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+CR G+ KA L + M P+ TY+ILI S+C+ G
Sbjct: 448 GMCRQGDLGKANELWDDMH--SREIFPNHVTYSILIDSHCEKG 488
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 142 FARGNNVKGLWDFLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F R ++ F KEM RR ++V+ S CLI + G ++ A M++F
Sbjct: 274 FCRAGELEEALRFYKEMRGRRVTPDVVSFS---CLIGLFTRRGEMDHAAEYLREMREFGL 330
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y +VI CR G +A L + E+ F C PDV TY L++ CK
Sbjct: 331 MPDGVIYTMVIGGFCRAGLMLEA--LRVRDEMVAFGCLPDVVTYNTLLNGLCK 381
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI E+G V+ A A M P++ YN +I CR GN +K + L +M
Sbjct: 476 TYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKM 535
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ PD+ TY LI Y K G
Sbjct: 536 RHD--KVMPDLITYNTLIHGYVKEG 558
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 150 GLWDFLKEMSRRGN--GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G WD +E+ R + G + LI G + EAL + M+ R PDV ++
Sbjct: 243 GRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSF 302
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ +I R G + A L +M G PD YT++I +C+ G+
Sbjct: 303 SCLIGLFTRRGEMDHAAEYLREMREFGLM--PDGVIYTMVIGGFCRAGL 349
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 144 RGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
R +V+ + M +G LVT ++V +K L G ++A F M P
Sbjct: 206 RAGDVEAAMALIDSMVSKGIKPGLVTYNSV---LKGLLRNGRWDKAREVFRAMDACGVAP 262
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
DV ++N++I CR G +A ++M G R PDV +++ LI + + G
Sbjct: 263 DVRSFNMLIGGFCRAGELEEALRFYKEMR--GRRVTPDVVSFSCLIGLFTRRG 313
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R NV FL +M R + + T LI +EG ++EA M+ +
Sbjct: 519 YCRSGNVSKGQQFLPKM--RHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQ 576
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD YN++I+ GN +A ++ ++M G PD YTY +I+ + G
Sbjct: 577 PDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIE--PDRYTYMSMINGHVVAG 628
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 5/144 (3%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+ KA E + + F N VT + V + FL EM +G + T
Sbjct: 455 LGKANELWDDMHSR-EIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGI--VPNIMT 511
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+IK G V++ +M+ + PD+ YN +I+ + G ++A LL+ ME
Sbjct: 512 YNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIME 571
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
+ PD TY ++IS + +G
Sbjct: 572 NENVQ--PDAVTYNMIISGFSVHG 593
>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
Length = 729
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI+ L G V +ALA F M C P V Y+++++A C+ + +A LL++M G
Sbjct: 168 LIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKG 227
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD+ TY +LI++ C G
Sbjct: 228 --CEPDIVTYNVLINAMCNEG 246
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 16/177 (9%)
Query: 91 ANNVLVLGPAAYRNPQKVT----LGINKATEFYHWVERFFHFFH------NEVTCKEMGI 140
A N+L P+ P VT L +E + VE F +EVT +
Sbjct: 251 ALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVT 310
Query: 141 VFARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ V + MS G ++VT S++ + L + G V++A+ R+K +
Sbjct: 311 SLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSI---LDGLCDVGRVDDAVELLSRLKSYG 367
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
C+PD AY V+ LC + + A L+ +M CPPD T+ +I+S C+ G+
Sbjct: 368 CKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSD--CPPDEVTFNTVIASLCQKGL 422
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 149 KGLWD----FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
KGL D +++MS G N ++VT +++ I L E +++A+ ++ + C+PD
Sbjct: 420 KGLVDRAIKVVEQMSENGCNPDIVTYNSI---IDGLCNERCIDDAMELLSNLQSYGCKPD 476
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ +N ++ LC V + A L+ M CPPD T+ +I+S C+ G+
Sbjct: 477 IVTFNTLLKGLCSVDRWEDAEQLMVNMM--HSDCPPDATTFNTVITSLCQKGL 527
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+M RG V T ++ L+ + +A+ M+ C PD+ YNV+INA+C
Sbjct: 186 DDMLHRGCSPSVVTYSI--LLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMC 243
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
G+ ++A +L +LP C PD TYT ++ S C
Sbjct: 244 NEGDVDEALNILS--DLPSHGCKPDAVTYTPVLKSLC 278
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM +G + T V LI + EG V+EAL + C+PD Y V+ +
Sbjct: 219 LLDEMRAKGCEPDIVTYNV--LINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKS 276
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC + + L +M +C PD T+ +++S C+ G+
Sbjct: 277 LCGSERWKEVEELFAEM--ASNKCAPDEVTFNTIVTSLCQQGL 317
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L ++GLV+ A+ +M + C PD+ YN +I+ LC + A LL ++
Sbjct: 413 VIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQ--S 470
Query: 235 FRCPPDVYTYTILISSYCK 253
+ C PD+ T+ L+ C
Sbjct: 471 YGCKPDIVTFNTLLKGLCS 489
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T +I L ++GL+ +A+ T M + C P+ YN+V++AL + G +A LL
Sbjct: 513 TTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSG 572
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M PD+ TY +IS+ K G
Sbjct: 573 MT----NGTPDLITYNTVISNITKAG 594
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 159 SRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
S G+G+ + V C LIK L G V +A F + V YN ++N CR
Sbjct: 86 SGGGSGKCLPLPVVPCNILIKRLCSGGRVADAERVFATLGA---SATVVTYNTMVNGYCR 142
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
G AR L+ M PPD +T+ LI + C G
Sbjct: 143 AGRIEDARRLISGMPF-----PPDTFTFNPLIRALCVRG 176
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD + +N +I ALC G A + + M G C P V TY+IL+ + CK
Sbjct: 160 PDTFTFNPLIRALCVRGRVPDALAVFDDMLHRG--CSPSVVTYSILLDATCK 209
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + ST ++ L + G EAL M PD+ YN VI+ + + G +
Sbjct: 541 NGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGT--PDLITYNTVISNITKAGKMEE 598
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A LL M G PD TY L C+
Sbjct: 599 ALDLLRVMVSNGLS--PDTITYRSLAYGICR 627
>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
Length = 793
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 4/144 (2%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F++W++R F H+ T M + R + L EM R G V T
Sbjct: 371 ALGFFYWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVT--YNR 428
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G +NEA++ F RM++ C+PD Y +I+ + G + A + ++M+
Sbjct: 429 LIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAH 488
Query: 235 FRCPPDVYTYTILISSYCKYGMQT 258
PD +TY+++I+ K G T
Sbjct: 489 LS--PDTFTYSVIINCLGKAGHLT 510
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T + +I LG+ G + A F M C P++ YN++I + N+ A L
Sbjct: 493 TFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYR 552
Query: 229 QMELPGFRCPPDVYTYTILI 248
M+ GF+ PD TY+I++
Sbjct: 553 DMQNAGFQ--PDKVTYSIVM 570
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT M + A+ N + ++M G + VT S V ++VLG G + EA
Sbjct: 527 NLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIV---MEVLGHCGHLEEAE 583
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
A F MK+ PD Y ++++ +VGN K+ + M G C P+V T L+S
Sbjct: 584 AIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGL-C-PNVPTCNSLLS 641
Query: 250 SYCK 253
++ +
Sbjct: 642 AFLR 645
>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580 [Vitis vinifera]
gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+K L ++GL+ +AL M + C PD++ YN+VIN LC++G + A L+ G
Sbjct: 396 LVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKG 455
Query: 235 FRCPPDVYTYTILISSYCK 253
PDV+T+ LI YCK
Sbjct: 456 HL--PDVFTFNTLIDGYCK 472
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
KA E ++ V++ F H +T K M + + + L E + L+ +
Sbjct: 22 KALEIFNSVKKEDGFKHTLLTYKGMIEKLGFHGEFEAMEEVLAETRMNIDNGLLEGVYIG 81
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
+ + G +G + EA+ F RM F C P V +YN ++N L F++A + +M
Sbjct: 82 AM-RNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDK 140
Query: 234 GFRCPPDVYTYTILISSYCK 253
G PDVYT+TI + S+C+
Sbjct: 141 GI--VPDVYTFTIRMKSFCR 158
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFR 199
F + V+ + ++EM +G ++V T L+K + G ++ A F R+ +Q++
Sbjct: 540 FCKARKVEEALNLIEEMQNKGLTPDVVNFGT---LMKGFCDNGDLDGAYQLFKRVDEQYK 596
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ YN++INA N N A L +M GF PD YTY ++I +CK G
Sbjct: 597 FSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGF--SPDSYTYRVMIDGFCKTG 650
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T LI ++ ++ A+ RM PDV YN ++N LC+ G +
Sbjct: 455 GHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDV 514
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ M G C P++ TY IL S+CK
Sbjct: 515 MGTFKLMMEKG--CVPNIITYNILTESFCK 542
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
ST LI L ++G ++ A+ F + +P++ N ++ L + G +A L+ +
Sbjct: 356 STYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNE 415
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M G C PD++TY ++I+ CK G
Sbjct: 416 MSENG--CSPDIWTYNLVINGLCKIG 439
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
TV I+ + ++NEA+ + + PDV YN +I LC+ +A L +M
Sbjct: 253 TVNIFIQGFCQRAMLNEAIRLLDGVGR-GLTPDVITYNTLICGLCKNFKVVEAEHYLRKM 311
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
G+ PD +TY +I YCK GM
Sbjct: 312 VNEGYE--PDGFTYNSIIDGYCKLGM 335
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T ++ L + G + + TF M + C P++ YN++ + C+ +A L+E+M
Sbjct: 497 TYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEM 556
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G PDV + L+ +C G
Sbjct: 557 QNKGL--TPDVVNFGTLMKGFCDNG 579
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
EE EA F M PD+ A+N +I+ LCR G+ ++ LL ++ G P+
Sbjct: 193 EENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGV--SPN 250
Query: 241 VYTYTILISSYCKYGM 256
++T I I +C+ M
Sbjct: 251 LFTVNIFIQGFCQRAM 266
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
+++T +T+ C L + V EA +M PD + YN +I+ C++G A
Sbjct: 284 DVITYNTLIC---GLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNAD 340
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+L GF PD TY LI+ C+ G
Sbjct: 341 QILRDGAFKGF--VPDESTYCSLINGLCQDG 369
>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 653
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Query: 115 ATEFYHWV---ERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
A F+ W +++ H V+ E+ A ++ ++ LK+ G L+T S
Sbjct: 133 AVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKD-----RGLLMTESA 187
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
LIK G GLV E L + RMK+ P +Y YN ++N L A + E M+
Sbjct: 188 ANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMD 247
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
G + PD TY I+I YCK G
Sbjct: 248 --GGKIVPDTVTYNIMIKGYCKAG 269
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
R ++ L+DF R G + LI LG+ G + +A F M + C
Sbjct: 409 GRLDDGMELFDFC-----RNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCAR 463
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
D Y YN +I+AL + G ++A L +ME G C VYT+TILI K
Sbjct: 464 DSYCYNAIIDALAKHGKIDQALALFGRMEEEG--CDQTVYTFTILIDGLFK 512
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
EA A F M Q CR +V Y +I++ + G+ +A L E+M+ GF PD TY++
Sbjct: 343 EAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFE--PDAVTYSV 400
Query: 247 LISSYCKYG 255
L++ CK G
Sbjct: 401 LVNGLCKSG 409
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 42/118 (35%), Gaps = 37/118 (31%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN----------- 221
T LI + G + EA+ F RMK PD Y+V++N LC+ G +
Sbjct: 364 TALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRN 423
Query: 222 ------------------------KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A L E+M G C D Y Y +I + K+G
Sbjct: 424 KGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKG--CARDSYCYNAIIDALAKHG 479
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 163 NGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G++V T T +IK + G + +A+ F M+ +PD Y +I A +F+
Sbjct: 248 GGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFD 307
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
L +ME G PP ++Y+++I CK
Sbjct: 308 TCLSLYLEMEERGLEIPP--HSYSLVIGGLCK 337
>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic [Vitis vinifera]
gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ + +++ + L+EM G + T T+ I++LG G ++EA RM
Sbjct: 235 VALGKRRDIETVMGLLQEMESLGLRPNIYTFTIC--IRILGRAGKIDEAYGILKRMDDAG 292
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C PDV Y V+I+ALC G N A+ L +M+ + PD TY L+ + +G
Sbjct: 293 CGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHK--PDRVTYITLLDKFSDHG 346
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ R + + LK M G G V T TV LI L G +N A F +MK
Sbjct: 271 ILGRAGKIDEAYGILKRMDDAGCGPDVVTYTV--LIDALCNAGKLNNAKELFLKMKASSH 328
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD Y +++ G+ + + +ME G+ PDV T+TILI + CK G
Sbjct: 329 KPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYL--PDVVTFTILIDALCKVG 381
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F+ ++ + +F EM +G L T T LI L + G V+EA T MK+
Sbjct: 342 FSDHGDLDAIKEFWSEM--EADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVA 399
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+++ YN +I L R+ ++A L ME G YTY + I Y K G
Sbjct: 400 PNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETT--AYTYILFIDYYGKSG 451
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 9/173 (5%)
Query: 84 KKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFA 143
K + + I N++ + Y ++ L +A EF++ +++ + +T + +
Sbjct: 462 KMKTNGIVPNIVACNASLYSLAEQGRL--EEAKEFFNGLKKC-GLAPDAITYNILMRCYG 518
Query: 144 RGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
+ V L EM G + E+V ++ LI L + V+EA F RMK+ + P
Sbjct: 519 KAGRVDDAIKLLSEMEENGCDPEVVIINS---LIDTLYKADRVDEAWKMFQRMKEMKLAP 575
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V YN ++ L + G +A L + M CPP+ ++ L+ CK G
Sbjct: 576 TVVTYNTLLAGLGKEGRVQEATALFKGM--IADDCPPNTISFNTLLDCLCKNG 626
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ G++G V A F RM + RPD+ +Y+++++ LC VG + A E+++L G
Sbjct: 934 LMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSG 993
Query: 235 FRCPPDVYTYTILISS 250
PD+ Y ++I+
Sbjct: 994 L--DPDLVCYNLMING 1007
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L+ LG+EG V EA A F M C P+ ++N +++ LC+ G + A +L
Sbjct: 576 TVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKML 635
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
+M C PDV TY +I K
Sbjct: 636 FRM--TEMNCFPDVLTYNTVIYGLIK 659
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + L A FY+MK C PDV+ YN+ ++AL + G + L E+M G
Sbjct: 794 LIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRG 853
Query: 235 FRCPPDVYTYTILI 248
C P+ T+ I+I
Sbjct: 854 --CKPNTITHNIVI 865
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I LG V EAL+ F M+ PD+Y YN +I L G +A + E+++L G
Sbjct: 1004 MINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKG 1063
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+V+TY LI + G
Sbjct: 1064 LE--PNVFTYNALIRGHSMSG 1082
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTST-VTCLIKVLGEEGLVNEALATFYRMKQFR 199
F + +V+ + + M + G +L + S V CL V G V++AL F +K
Sbjct: 938 FGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMV----GKVDDALHYFEELKLSG 993
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD+ YN++IN L R +A L ++M G PD+YTY LI + GM
Sbjct: 994 LDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGI--TPDLYTYNALILNLGIAGM 1048
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T + L+ L + G V+ AL +RM + C PDV YN VI L + N A +L
Sbjct: 612 TISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFH 671
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
QM+ + PD T L+ K G
Sbjct: 672 QMKKVIY---PDYVTLCTLLPGVIKDG 695
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G + EA F M + C P+ YN+++N + G+ A L +M G
Sbjct: 899 LIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEG 958
Query: 235 FRCPPDVYTYTILISSYCKYG 255
R PD+ +Y+I++ C G
Sbjct: 959 IR--PDLKSYSIMVDCLCMVG 977
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI +L + G EAL + RM +P + Y+ ++ AL + + LL++ME G
Sbjct: 198 LIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLG 257
Query: 235 FRCPPDVYTYTILI 248
R P++YT+TI I
Sbjct: 258 LR--PNIYTFTICI 269
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T I G+ G +A+ TF +MK P++ A N + +L G +A+
Sbjct: 436 TAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFF 495
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++ G PD TY IL+ Y K G
Sbjct: 496 NGLKKCGL--APDAITYNILMRCYGKAG 521
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
S + L+K L + G +A F ++ K F P + AYN +I+ L + A L
Sbjct: 753 SVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFY 812
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M+ G C PDV+TY + + + K G
Sbjct: 813 KMKNAG--CTPDVFTYNLFLDALGKSG 837
>gi|15232243|ref|NP_191564.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181813|sp|Q9M1D8.1|PP288_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g60050
gi|7076758|emb|CAB75920.1| putative protein [Arabidopsis thaliana]
gi|332646485|gb|AEE80006.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 473
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F+ W F H + + +FA K +W + EM + +G T T
Sbjct: 132 AYRFFLWSGEQECFRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQ--DGFPTTARTFNL 189
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI GE GL +A+ F + K F RP ++YN ++N+L V + ++ +QM G
Sbjct: 190 LICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDG 249
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F PDV TY IL+ + + G
Sbjct: 250 F--SPDVLTYNILLWTNYRLG 268
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
EM+R G + T L+ +LG+ AL T MK+ P V Y +I+
Sbjct: 276 LFDEMARDGFSP--DSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDG 333
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L R GN ++ L++M G C PDV YT++I+ Y G
Sbjct: 334 LSRAGNLEACKYFLDEMVKAG--CRPDVVCYTVMITGYVVSG 373
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+R N++ FL EM + G V TV V+ E +++A F M
Sbjct: 334 LSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGE--LDKAKEMFREMTVKGQL 391
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V+ YN +I LC G F +A +LL++ME G C P+ Y+ L+S K G
Sbjct: 392 PNVFTYNSMIRGLCMAGEFREACWLLKEMESRG--CNPNFVVYSTLVSYLRKAG 443
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI L G + M + CRPDV Y V+I G +KA+ + +M +
Sbjct: 328 TTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTV 387
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G P+V+TY +I C G
Sbjct: 388 KG--QLPNVFTYNSMIRGLCMAG 408
>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI LG+ G +A+ F M C+PD Y Y +IN LC++G A L
Sbjct: 44 TIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLF 103
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKY 254
++ME G C +V TY+ LI S CKY
Sbjct: 104 KKMEEAG--CQLNVVTYSTLIHSLCKY 128
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D K M GN L T L+ ++G + +A F M+ +P++ YN+++N
Sbjct: 311 DLFKNMHTNGN--LPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVN 368
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
A+C+ GN AR L ++ + G + P+V YT +I+ CK G+
Sbjct: 369 AMCKSGNLKDARELFSELFVIGLQ--PNVQIYTTIINGLCKEGL 410
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 150 GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
GL+ ++E + N +VT ST LI L + VNEAL F MK P ++ Y
Sbjct: 101 GLFKKMEEAGCQLN--VVTYST---LIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTS 155
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+I LC + +A LL +M P+V T+ +L+ ++CK G
Sbjct: 156 LIQGLCNFSRWKEASALLNEM--TSLNIMPNVVTFNVLVDTFCKEG 199
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA F M P+ +YN +I+ LC++G +A+ L + M G P++YTY
Sbjct: 271 IDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNL--PNLYTY 328
Query: 245 TILISSYCKYG 255
IL+ +CK G
Sbjct: 329 AILLDGFCKQG 339
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T+ LI + V+ + + + +P + + +IN L +VG F +A L +
Sbjct: 10 TCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFD 69
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
M G C PD YTYT +I+ CK G
Sbjct: 70 DMVARG--CQPDDYTYTTIINGLCKIG 94
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ + + G + +A F + +P+V Y +IN LC+ G ++A ME G
Sbjct: 366 LVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDG 425
Query: 235 FRCPPDVYTYTILISSYCKY 254
CPPD ++Y ++I + ++
Sbjct: 426 --CPPDEFSYNVIIRGFLQH 443
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L +EGL++EAL F M+ C PD ++YNV+I + + ++A L+ +M
Sbjct: 399 TTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRD 458
Query: 233 PGF 235
GF
Sbjct: 459 RGF 461
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFY 193
CKE ++ A G LK M+ G ++VT +++ + E V EA F
Sbjct: 196 CKEGKVLAAEG--------VLKTMTEMGVEPDVVTYNSLMYGYSMWTE---VVEARKLFD 244
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
M C+PDV++Y+++IN C+ ++A+ L +M G P+ +Y LI C+
Sbjct: 245 VMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQG--STPNNVSYNTLIHGLCQ 302
Query: 254 YG 255
G
Sbjct: 303 LG 304
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 33/119 (27%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI+ L EA A M P+V +NV+++ C+ G A +L
Sbjct: 149 TIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVL 208
Query: 228 EQMELPGFR---------------------------------CPPDVYTYTILISSYCK 253
+ M G C PDV++Y+ILI+ YCK
Sbjct: 209 KTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCK 267
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I L + G A F +M++ C+ +V Y+ +I++LC+ N+A + M
Sbjct: 82 TYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYM 141
Query: 231 ELPGFRCPPDVYTYTILISSYCKY 254
+ P ++TYT LI C +
Sbjct: 142 KAKDI--SPTIFTYTSLIQGLCNF 163
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G + EA F M P++Y Y ++++ C+ G KA L M+
Sbjct: 296 LIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTY 355
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ P++ Y IL+++ CK G
Sbjct: 356 LK--PNLVMYNILVNAMCKSG 374
>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
Length = 641
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +IK + + GLV++A+ F M +C+PDVY Y +++ LC+ ++A LL++M
Sbjct: 171 TFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEM 230
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
++ G C P T+ +LI+ CK G
Sbjct: 231 QIDG--CFPSPVTFNVLINGLCKKG 253
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F GN K + + K+M++ + +V LI L ++G V EA+ + +M C+
Sbjct: 425 FEAGNGHKAI-EMWKDMAKHNFTQNEVCYSV--LIHGLCKDGKVKEAMMVWAQMLGKGCK 481
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDV AY +IN L G A L +M PDV TY IL+++ CK
Sbjct: 482 PDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALCK 533
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRM---KQFRCRPDVYAYNVVINALCRVGNFNKAR 224
T + ++ V+ +EGL AL + + K P+V +N+VI +C+VG + A
Sbjct: 130 TVKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVDDAV 189
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ M P +C PDVYTY L+ CK
Sbjct: 190 QMFRDM--PVSKCQPDVYTYCTLMDGLCK 216
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G V + LI L +EG EA+ F M C + Y+ VI+ LCR G ++A
Sbjct: 339 GYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEA 398
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+L +M RC P+ YTY+ L+ + + G
Sbjct: 399 LEVLSEM--TNNRCKPNAYTYSSLMKGFFEAG 428
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 175 LIKVLGEEGLVNEALATFYRM--KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+I L GLV +AL + M ++ +PDV YN+++NALC+ + ++A LL M
Sbjct: 490 MINGLSNAGLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLD 549
Query: 233 PGFRCPPDVYTYTILISS 250
G C PD+ T I + +
Sbjct: 550 RG--CDPDLVTCIIFLRT 565
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK-QFRC 200
+A + K L L M R +V + K G+ L +A+ F RM +F C
Sbjct: 70 YANLGDFKSLEKVLDRM--RCEKRVVVEKCFVVIFKAYGKAHLPEKAVGLFDRMAYEFEC 127
Query: 201 RPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ V ++N V+N + + G F +A F + G P+V T+ ++I + CK G+
Sbjct: 128 KRTVKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGL 184
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+F G + + + F KEM+ + EL T + +I L +G +EAL M RC
Sbjct: 354 LFKEGKSQEAMQLF-KEMTVK-ECEL-NTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRC 410
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P+ Y Y+ ++ GN +KA + + M F + Y++LI CK G
Sbjct: 411 KPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFT--QNEVCYSVLIHGLCKDG 463
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+ YN +I+ LC G KA LL++M +C P+V TY +I+ K G
Sbjct: 270 CAPNEVTYNTLIHGLCLKGKLEKAISLLDRM--VSSKCVPNVVTYGTIINGLVKQG 323
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L +G + +A++ RM +C P+V Y +IN L + G +L M
Sbjct: 276 TYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALM 335
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G+ + Y Y+ LIS K G
Sbjct: 336 EERGYHV--NEYVYSALISGLFKEG 358
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 13/152 (8%)
Query: 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFA-------RGNNVKGLWDFLKEMSRRGN 163
G +KA E +R+F+ + +GI A GN + F +SRR
Sbjct: 539 GYSKAGEM-EIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRR-- 595
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
L T + LI L G ++EA F +++ P+ + YN +I+ C+ GN +KA
Sbjct: 596 -VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKA 654
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LLE+M + G PD+ TY ILI CK G
Sbjct: 655 SQLLEEMCIKGIN--PDIVTYNILIDGLCKAG 684
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Query: 126 FHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLV 185
F F + ++C + +GN V+ W M + L T T +I + G V
Sbjct: 174 FEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMC--AHKVLPDVYTYTNMISAHCKVGNV 231
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+A M + C P++ YNV+I LCR ++A L M G PD+YTY
Sbjct: 232 KDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGL--VPDLYTYD 289
Query: 246 ILISSYC 252
ILI+ +C
Sbjct: 290 ILINGFC 296
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R N++G L+EM NG T L+ +EG V E+ RM++
Sbjct: 435 LCRCGNLQGTNAILREMVM--NGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGIL 492
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV+ YN +I C+ +AR L ME+ R P+ +TY I Y K G
Sbjct: 493 PDVFCYNSLIIGFCKAKRMEEARTYL--MEMLERRLRPNAHTYGAFIDGYSKAG 544
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T LI ++G V++A M PD+ YN++I+ LC+ G +A
Sbjct: 630 GLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERA 689
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ L + +E G P+ TY ++ YCK
Sbjct: 690 KNLFDDIEGRGL--TPNCVTYAAMVDGYCK 717
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A MK+ + P V Y+V+IN LCR GN +L +M + G + P+ YT L
Sbjct: 409 AFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLK--PNAVVYTTL 466
Query: 248 ISSYCKYG 255
++++ K G
Sbjct: 467 MTAHAKEG 474
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + G++ EA + M++ P Y +++ +GN ++ L E+M
Sbjct: 811 TYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM 870
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PD TY ++I +YC+ G
Sbjct: 871 VAKGIE--PDKMTYYVMIDAYCREG 893
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
NVK L EM +G + T V +I L L++EA+ M PD+Y
Sbjct: 230 NVKDAKRVLLEMGEKGCSPNLVTYNV--IIGGLCRARLLDEAIELKRSMVDKGLVPDLYT 287
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y+++IN C +A+ +L +M G + P+ TY LI + + G
Sbjct: 288 YDILINGFCMEKRSREAKLMLLEMIDVGLK--PEPITYNALIDGFMRQG 334
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 147 NVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
NV L+EM +G N ++VT + LI L + G + A F ++ P+
Sbjct: 650 NVDKASQLLEEMCIKGINPDIVTYNI---LIDGLCKAGEIERAKNLFDDIEGRGLTPNCV 706
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
Y +++ C+ N A LLE+M L G PPD + Y ++++ CK
Sbjct: 707 TYAAMVDGYCKSKNPTAAFQLLEEMLLRGV--PPDAFIYNVILNFCCK 752
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T L+ G ++E A F M PD Y V+I+A CR GN +A L
Sbjct: 843 TAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLK 902
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
+++ + G P V Y LI + CK
Sbjct: 903 DEILVKGM--PMSVAAYDALIQALCK 926
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 190 ATFYRMKQFRCR---PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
A F +++ R PD + YNV++N C+ F KA L ++M GF ++
Sbjct: 723 AAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF---ASTVSFNT 779
Query: 247 LISSYCKYG 255
LI YCK G
Sbjct: 780 LIEGYCKSG 788
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + +AL M + PD Y+++I CR N +A LL++M+ + P V
Sbjct: 369 GKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMK--KRKLAPTVL 426
Query: 243 TYTILISSYCKYG 255
TY+++I+ C+ G
Sbjct: 427 TYSVIINGLCRCG 439
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME-LPGFRCPPDV 241
G + EA+ F K F RP + + N ++ L + NK + + + + PDV
Sbjct: 159 GFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLK---GNKVELFWKVFDGMCAHKVLPDV 215
Query: 242 YTYTILISSYCKYG 255
YTYT +IS++CK G
Sbjct: 216 YTYTNMISAHCKVG 229
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 67/167 (40%), Gaps = 23/167 (13%)
Query: 104 NPQKVTL-----GINKATEFYHWVERFFHFFH---------NEVTCKEMGIVFARGNNVK 149
NP VT G+ KA E +ER + F N VT M + + N
Sbjct: 667 NPDIVTYNILIDGLCKAGE----IERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPT 722
Query: 150 GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
+ L+EM RG V ++ +E +AL F M + + ++N
Sbjct: 723 AAFQLLEEMLLRGVPPDAFIYNV--ILNFCCKEEKFEKALDLFQEMLE-KGFASTVSFNT 779
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+I C+ G +A LLE+M F P+ TYT LI CK GM
Sbjct: 780 LIEGYCKSGKLQEANHLLEEMIEKQF--IPNHVTYTSLIDHNCKAGM 824
>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 892
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 141 VFARGNNVKGL---------WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
V G +KGL W ++ + R+ + + +I L + G+++EA
Sbjct: 245 VVTYGTYIKGLCKVGLFGVAWRLIQNLCRKN--QPLNNHCFNAVIYGLCQGGILDEASEV 302
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F MK PDVY+Y+++I+ CR G ++A + ++M G P++Y+Y+ILI +
Sbjct: 303 FKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGIL--PNIYSYSILIDGF 360
Query: 252 CKYG 255
CK G
Sbjct: 361 CKEG 364
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ KEM + +G L + + LI +G V++A F M+ P++Y+Y+++I+
Sbjct: 301 EVFKEM--KNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILID 358
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ G +KA + E+M+ G PDVY+Y+ILI +C+ G
Sbjct: 359 GFCKEGRVDKALEVFEEMKNSGIL--PDVYSYSILIDGFCRKG 399
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R V + KEM R +G L + + LI +EG V++AL F MK
Sbjct: 325 FCRKGRVDQASEVFKEM--RNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGIL 382
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDVY+Y+++I+ CR G+ + A E+M F P + Y LI Y K
Sbjct: 383 PDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNF--SPSAFNYCSLIKGYYK 432
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
+ L+D EMSR G V T TC I + N+A + +MK+ PD Y
Sbjct: 615 RALFD---EMSREGCSPNVVT--YTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQILYT 669
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++I A C G N+A L ++M+ G RC P+V YT LI+SY K
Sbjct: 670 MLIAAFCNTGEMNRAEALFDEMKQEG-RCTPNVVMYTCLINSYIK 713
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R N+ K + F+K M++ G V T T+ LI + + ++ A F MK+ R PD
Sbjct: 538 RLNSEKAVMLFIK-MTKVGITFNVKTYTI--LINLFISDCKMDVAYRLFKGMKESRVYPD 594
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
AY ++ C G +AR L ++M G C P+V TYT I+ Y K
Sbjct: 595 QIAYTSLVAGFCNTGEMTRARALFDEMSREG--CSPNVVTYTCFINEYLK 642
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ G + A A F M + C P+V Y IN ++ N+A L E+M+
Sbjct: 599 TSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKE 658
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G PD YT+LI+++C G
Sbjct: 659 RGVY--PDQILYTMLIAAFCNTG 679
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 161 RGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR-V 217
R + + + ++C L+K L E+ V+ F + +F RP+++ Y +++N CR V
Sbjct: 161 RAKDDGIELNIMSCNFLLKCLVEDNRVDGVRLLFEVLIKFGPRPNIHTYTIMMNFFCRGV 220
Query: 218 G---NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
G + +A +L ++ + G P+V TY I CK G+
Sbjct: 221 GCSVDIRRASEILGKIYMSGE--TPNVVTYGTYIKGLCKVGL 260
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQ-FRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
T LI G +N A A F MKQ RC P+V Y +IN+ ++ ++A L E+M
Sbjct: 669 TMLIAAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRDQAEKLYEEMR 728
Query: 232 LPGF 235
G
Sbjct: 729 AKGL 732
Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R ++ F +EM+ N + LIK + AL F M++
Sbjct: 395 FCRKGDMDSAIKFWEEMT--SNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMW 452
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD A N +++ CR +FNKA L E+ + G P Y+Y I C+
Sbjct: 453 PDTIACNHILSIYCRKPDFNKALALSEKFQENGVHFNP--YSYNEFIHRICR 502
>gi|71027557|ref|XP_763422.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350375|gb|EAN31139.1| hypothetical protein TP03_0402 [Theileria parva]
Length = 596
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNE 187
+NE+ M + N+V ++M RG V +T+ T LIK G+ +++
Sbjct: 202 NNEIVYGCMFDAYVNNNSVDSAMRLFEDMKERGK---VKPNTIMYTTLIKGYGQNKQLDK 258
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ F M+Q +P+ YN VI+A RVG N A LLE+M G PD+ T++ +
Sbjct: 259 AMRIFRLMQQDGVQPNTVTYNSVIDACARVGEMNSATRLLEEMLSSGIE--PDLITFSTI 316
Query: 248 ISSYC 252
I YC
Sbjct: 317 IKGYC 321
>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT +T+ ++ L + G + +A+ RM Q C PDV Y ++I A CR +A
Sbjct: 203 DVVTYNTI---LRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAM 259
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL++M G C PDV TY +L++ CK G
Sbjct: 260 KLLDEMRDRG--CTPDVVTYNVLVNGICKEG 288
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E TC++ G+ G +K L EM RG V T V L+ + +EG ++EA+
Sbjct: 247 EATCRDSGV----GQAMK----LLDEMRDRGCTPDVVTYNV--LVNGICKEGRLDEAIKF 296
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
M C+P+V +N+++ ++C G + A LL M GF P V T+ ILI+
Sbjct: 297 LNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF--SPSVVTFNILINFL 354
Query: 252 CKYGM 256
C+ G+
Sbjct: 355 CRKGL 359
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ + V +A+ M+ C PDV YNV++N +C+ G ++A L M
Sbjct: 241 TYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM 300
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
P C P+V T+ I++ S C G
Sbjct: 301 --PSSGCQPNVITHNIILRSMCSTG 323
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 150 GLW----DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
G W L +M R+G V T + LI L +GL+ A+ +M + C+P+
Sbjct: 323 GRWMDAEKLLADMLRKGFSPSVVTFNI--LINFLCRKGLLGRAIDILEKMPKHGCQPNSL 380
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+YN +++ C+ ++A LE+M G C PD+ TY ++++ CK G
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRG--CYPDIVTYNTMLTALCKDG 428
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G+G + T +I + G +N AL+ RM PDV YN ++ +LC G
Sbjct: 165 GSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLK 221
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+A +L++M C PDV TYTILI + C+
Sbjct: 222 QAMEVLDRM--LQRDCYPDVITYTILIEATCR 251
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
++L+ M RG ++VT +T ++ L ++G V +A+ ++ C P + YN VI
Sbjct: 400 EYLERMVSRGCYPDIVTYNT---MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVI 456
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ L + G KA LL++M + PD TY+ L+ + G
Sbjct: 457 DGLAKAGKTGKAIKLLDEMRAKDLK--PDTITYSSLVGGLSREG 498
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ FL+ M GN + T LI+ G +A ++ PDV YNV+I
Sbjct: 122 FKFLENMVYHGNVPDIIPCTT--LIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMI 179
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ C+ G N A +L++M + PDV TY ++ S C G
Sbjct: 180 SGYCKAGEINNALSVLDRMSV-----SPDVVTYNTILRSLCDSG 218
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+E ++ A+ RM C PD+ YN ++ ALC+ G A +L Q+ G C P
Sbjct: 391 KEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG--CSPV 448
Query: 241 VYTYTILISSYCKYG 255
+ TY +I K G
Sbjct: 449 LITYNTVIDGLAKAG 463
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T + L+ L EG V+EA+ F+ ++ RP+ +N ++ LC+ ++A L
Sbjct: 484 TITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLV 543
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
M G C P +YTILI GM
Sbjct: 544 YMINRG--CKPTETSYTILIEGLAYEGM 569
>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
Length = 550
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK + G +AL RM +F C PD +N++++ LCR N+ LL +++ G
Sbjct: 224 VIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDG 283
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+V TYT +IS YCK G
Sbjct: 284 V-CMPNVVTYTSVISGYCKAG 303
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 11/168 (6%)
Query: 88 DNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN 147
D + NV++ G N QK + + TEF + H + C R
Sbjct: 217 DGWSFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLC--------RAKQ 268
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
V D L+ + R G + T T +I + G + +AL+ + M + RP+ Y
Sbjct: 269 VNRGHDLLRRLQRDGVC-MPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTY 327
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
NV+IN + + A + Q+ L RCPPDV T++ LI YC+ G
Sbjct: 328 NVLINGYGKALDMESAVRMYRQLILR--RCPPDVVTFSSLIDGYCRCG 373
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRC-RPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L+ +L G +A+A F Q PD +++NVVI +CRVGNF KA L+E+M
Sbjct: 188 LLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGNFQKALELVERMT-- 245
Query: 234 GFRCPPDVYTYTILISSYCK 253
F C PD T+ IL+ C+
Sbjct: 246 EFGCSPDTITHNILVDGLCR 265
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 11/166 (6%)
Query: 88 DNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN 147
D I +N+LV G + +N+ + ++R N VT + + +
Sbjct: 252 DTITHNILVDGLCRAKQ-------VNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGR 304
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
++ +M G T T LI G+ + A+ + ++ RC PDV +
Sbjct: 305 MEDALSVYNDMLESGTRP--NTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTF 362
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ +I+ CR G + A + ++M + P+VYT++I+I S CK
Sbjct: 363 SSLIDGYCRCGQLDDAMRIWKEMGQHHIQ--PNVYTFSIIIHSLCK 406
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 41/132 (31%)
Query: 160 RRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV-- 217
RR ++VT S+ LI G +++A+ + M Q +P+VY ++++I++LC+
Sbjct: 353 RRCPPDVVTFSS---LIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNR 409
Query: 218 ----------------------------------GNFNKARFLLEQMELPGFRCPPDVYT 243
G +A ++ ME G C PD YT
Sbjct: 410 SAEALGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKG--CHPDKYT 467
Query: 244 YTILISSYCKYG 255
YTILI +C G
Sbjct: 468 YTILIIGHCMKG 479
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL+E++ R + T +I +L + G V EA M++ C PD Y Y ++I
Sbjct: 416 FLRELNMRADIA-PQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIG 474
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
C G +A L +M G C PD T IS K GM
Sbjct: 475 HCMKGRIPEAITLFHKMVETG--CRPDKITVNSFISCVLKAGM 515
>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Glycine max]
Length = 545
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + + + WD + EM RG+ V T LI L + G +++A+A
Sbjct: 369 NTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVIT--YNSLINGLCKNGQLDKAIA 426
Query: 191 TFYRMKQFRCRPDVYAYNVVINA-LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
+MK +PD+Y N++++ LC+ A+ L + + G+ P+VYTY I+I
Sbjct: 427 LINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYH--PNVYTYNIIIY 484
Query: 250 SYCKYGM 256
+CK G+
Sbjct: 485 GHCKEGL 491
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
++ RR +G L + V +I L + LV+EA F M +V Y+ +I+
Sbjct: 189 QLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGF 248
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C VG +A L +M L PDVY Y L+ + K G
Sbjct: 249 CIVGKLTEALGFLNEMVLKAIN--PDVYIYNTLVDALHKEG 287
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
V+ + KEM ++ + T T LI L + G ++ A M +V Y
Sbjct: 351 VEEALNLYKEMHQKN--MVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITY 408
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
N +IN LC+ G +KA L+ +M+ G + PD+YT IL+
Sbjct: 409 NSLINGLCKNGQLDKAIALINKMKDQGIQ--PDMYTLNILL 447
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V EAL + M Q P+ YN +I+ LC+ G + A L+++M G +V TY
Sbjct: 351 VEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHH--ANVITY 408
Query: 245 TILISSYCKYG 255
LI+ CK G
Sbjct: 409 NSLINGLCKNG 419
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ EMS +G + +VT S + ++G+ + EAL M PDVY YN ++
Sbjct: 224 NLFSEMSVKGISANVVTYSAIIHGFCIVGK---LTEALGFLNEMVLKAINPDVYIYNTLV 280
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+AL + G +A+ +L + + P+V TY LI Y K+
Sbjct: 281 DALHKEGKVKEAKNVLAVIVKTCLK--PNVITYNTLIDGYAKH 321
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T+T LIK L +G V +AL ++ R D +Y +IN +C++G A LL
Sbjct: 133 TVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLR 192
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
+++ G P+V Y +I CK
Sbjct: 193 RID--GRLTEPNVVMYNTIIDCLCK 215
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV++YN++IN LC++ +A L ++M P+ TY LI CK G
Sbjct: 333 PDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNM--VPNTVTYNSLIDGLCKSG 384
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++AL F+RM R P + +N ++++ ++ ++ L ++EL + PD +T
Sbjct: 44 VDDALFQFHRMLCMRHTPPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQ--PDFFTL 101
Query: 245 TILISSYCKYG 255
ILI+ +C G
Sbjct: 102 NILINCFCHLG 112
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+ LI G +N A + ++ ++ +PD +I LC G KA +++
Sbjct: 100 TLNILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKL 159
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GFR D +Y LI+ CK G
Sbjct: 160 LAQGFRL--DQVSYGTLINGVCKIG 182
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 186 NEALATFYRMKQF-------------RCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
N+ L +F +MK + +PD + N++IN C +G N A +L ++
Sbjct: 67 NKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNILINCFCHLGQINLAFSVLSKILK 126
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G++ PD T T LI C G
Sbjct: 127 WGYQ--PDTVTLTTLIKGLCLKG 147
>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T ++ L E G EA+ F M++ C P+++ Y V+INA+C+ + R +L
Sbjct: 73 TVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRIL 132
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
++M G P V TY LI YCK GM
Sbjct: 133 DEMVEKGL--VPSVPTYNALIDGYCKEGM 159
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 135 CKEMGIVFARGNN-VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193
CK +V A NN V + M ++G + T LI L E G V+E + F
Sbjct: 6 CKLGNLVEANLNNDVNSAFSVFNMMPKKGCRR--NEVSYTNLIHGLCEVGRVDEGINIFK 63
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M++ C P V Y V+++AL G +A L +M G C P+++TYT++I++ CK
Sbjct: 64 KMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERG--CEPNIHTYTVMINAMCK 121
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
L +ST LI L +E V EAL M Q + V Y ++I A+ + G+F+ A
Sbjct: 316 LPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHR 375
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+L+QM G++ PDVY YT I ++C G
Sbjct: 376 ILDQMVSSGYQ--PDVYIYTAFIHAFCTRG 403
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+ A+A +M + R P V YN +I+ C++G + A LL M G PD +TY
Sbjct: 195 VHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGV--VPDQWTY 252
Query: 245 TILISSYCKYG 255
++ I + CK G
Sbjct: 253 SVFIDTLCKKG 263
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
L++ LKE + N E++ T+ LI + G +++A + RM C P+ YN +
Sbjct: 271 LFNSLKEKGIKAN-EVIYTA----LIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNAL 325
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I+ LC+ +A L+E M G +C V TYTILI + K G
Sbjct: 326 IDGLCKERKVQEALLLMESMIQKGLKCT--VPTYTILIVAMLKEG 368
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI + +EG + A +M +PDVY Y I+A C GN +A ++
Sbjct: 353 TVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMM 412
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
M G PD TYT++I +Y G+
Sbjct: 413 SMMFERGVM--PDALTYTLVIDAYGGLGL 439
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 45/103 (43%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L EM +G LV + T LI +EG+V A M C P+ YN +I
Sbjct: 131 ILDEMVEKG---LVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELIC 187
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CR N ++A LL +M R P V TY LI CK G
Sbjct: 188 GFCRKKNVHRAMALLSKMLES--RLTPSVVTYNSLIHGQCKIG 228
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEM--SRRGNGELVTTSTVT--CLIKVLGEEGLVN 186
NE T E+ F R NV L +M SR +T S VT LI + G ++
Sbjct: 178 NERTYNELICGFCRKKNVHRAMALLSKMLESR------LTPSVVTYNSLIHGQCKIGYLD 231
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
A M + PD + Y+V I+ LC+ G +A L ++ G + + YT
Sbjct: 232 SAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIK--ANEVIYTA 289
Query: 247 LISSYCKYG 255
LI YCK G
Sbjct: 290 LIDGYCKAG 298
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+F G ++ + + EM RG + T TV +I + +E + E M +
Sbjct: 84 LFESGRRMEAI-NLFSEMRERGCEPNIHTYTV--MINAMCKETKLEEGRRILDEMVEKGL 140
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P V YN +I+ C+ G A+ +L+ M C P+ TY LI +C+
Sbjct: 141 VPSVPTYNALIDGYCKEGMVEAAQEILDLMH--SNSCNPNERTYNELICGFCR 191
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 52/143 (36%), Gaps = 33/143 (23%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F N+K D + M RG + T T +I G GL+N A RM C
Sbjct: 399 FCTRGNIKEAEDMMSMMFERG--VMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCD 456
Query: 202 PDVYAYNVVIN--------------ALC---------------RVGNFNKARFLLEQMEL 232
P + Y+ +I ALC ++ F A L E+M
Sbjct: 457 PSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLE 516
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C P++ TY LI CK G
Sbjct: 517 HG--CSPNINTYAKLIIGLCKVG 537
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
AL F +M + C P++ Y +I LC+VG A+ L + M G P Y L
Sbjct: 507 ALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGV--SPSEAIYNSL 564
Query: 248 ISSYCKYGM 256
++ C+ G+
Sbjct: 565 LNCCCELGI 573
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
VN A + F M + CR + +Y +I+ LC VG ++ + ++M C P V TY
Sbjct: 20 VNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMRED--DCYPTVRTY 77
Query: 245 TILISSYCKYG 255
T+++ + + G
Sbjct: 78 TVIVHALFESG 88
>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M +F G KG F + SRR + + + LI L + G NE FY MK+
Sbjct: 524 MDCMFKAGEPEKGRAMFEEIKSRRF---VPDARSYSILIHGLIKAGFANETYELFYSMKE 580
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C D AYN+VI+ C+ G NKA LLE+M+ GF P V TY +I K
Sbjct: 581 QGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFE--PTVVTYGSVIDGLAK 634
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTT--STVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F + + + L+E+ ++G V T S + L+K EE +NEAL F MK+ +
Sbjct: 667 FGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVK--AEE--INEALVCFQSMKELK 722
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+ Y ++IN LC+V FNKA ++M+ G + P +YT +IS K G
Sbjct: 723 CTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMK--PSTISYTTMISGLAKAG 776
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 8/146 (5%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+N+A E++ W ER H + + +V AR N L L EMS G G S
Sbjct: 78 VNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFG----PSV 133
Query: 172 VTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
TC+ VL + + E M++F+ RP AY +I A V + + L +Q
Sbjct: 134 NTCIEMVLSCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQ 193
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M+ G+ P V+ +T LI + K G
Sbjct: 194 MQELGYE--PTVHLFTTLIRGFAKEG 217
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 6/143 (4%)
Query: 114 KATEFYHWVERFFHFFHNE-VTCKEMGIVFARGNNVKGLWDFLKEM--SRRGNGELVTTS 170
KA VE F H N V C G G +D + +R G + +
Sbjct: 285 KANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVI 344
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
C++ L + G V+EAL F MK+ P++ YN++I+ LCR G + A L + M
Sbjct: 345 AYNCILTCLRKMGKVDEALRVFEEMKK-DAAPNLSTYNILIDMLCRAGKLDCAFELRDSM 403
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ G P+V T I++ CK
Sbjct: 404 QKAGLF--PNVRTVNIMVDRLCK 424
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LI+ +EG V+ AL+ MK D+ YNV I++ +VG + A
Sbjct: 202 TVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFF 261
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++E G + PD TYT +I CK
Sbjct: 262 HEIEANGLK--PDEVTYTSMIGVLCK 285
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++ A +F+H +E +EVT M V + N + + + + + N + T
Sbjct: 254 VDMAWKFFHEIEAN-GLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEK--NRRVPCTYA 310
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+I G G +EA + R + P V AYN ++ L ++G ++A + E+M+
Sbjct: 311 YNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMK 370
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
P++ TY ILI C+ G
Sbjct: 371 KDA---APNLSTYNILIDMLCRAG 391
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V W F E+ NG T T +I VL + ++EA+ F +++ R
Sbjct: 248 FGKVGKVDMAWKFFHEI--EANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRV 305
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P YAYN +I G F++A LLE+ G P V Y +++ K G
Sbjct: 306 PCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKG--SIPSVIAYNCILTCLRKMG 357
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ LI G+ G ++EA + Q P+VY +N +++AL + N+A + M+
Sbjct: 661 SSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMK- 719
Query: 233 PGFRCPPDVYTYTILISSYCK 253
+C P+ TY ILI+ CK
Sbjct: 720 -ELKCTPNQVTYGILINGLCK 739
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V + L+EM +G T T +I L + ++EA F K R
Sbjct: 597 FCKCGKVNKAYQLLEEMKTKGFEP--TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIE 654
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+V Y+ +I+ +VG ++A +LE++ G P+VYT+ L+ + K
Sbjct: 655 LNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGL--TPNVYTWNSLLDALVK 704
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
A F +K R PD +Y+++I+ L + G N+ L M+ G C D Y I+I
Sbjct: 538 AMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQG--CVLDTRAYNIVID 595
Query: 250 SYCKYG 255
+CK G
Sbjct: 596 GFCKCG 601
>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
Length = 668
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V V L +M RRG V T TV L++ + + +A+A M+ C
Sbjct: 151 VLCDRGRVADALSLLDDMLRRGCQPNVVTYTV--LLEAMCKNSGFEQAMAVLDEMRAKGC 208
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P++ YNV+IN +CR G + AR LL + L + C PD +YT L+ C
Sbjct: 209 TPNIVTYNVIINGMCREGRVDDARDLLNR--LFSYGCQPDTVSYTTLLKGLC 258
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+VL + G V +AL+ M + C+P+V Y V++ A+C+ F +A +L++M
Sbjct: 144 TYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEM 203
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P++ TY ++I+ C+ G
Sbjct: 204 RAKG--CTPNIVTYNVIINGMCREG 226
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
Query: 115 ATEFYHWVERFF------HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT 168
A++ + VE F + NEVT + F RG V+ L++M+ E T
Sbjct: 259 ASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEH---ECAT 315
Query: 169 TSTV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T+ +I + ++G V++A M + C PD +Y V+ LCR +N A+ LL
Sbjct: 316 NTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELL 375
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
++M CPP+ T+ I C+ G+
Sbjct: 376 KEMVRNN--CPPNEVTFNTFICILCQKGL 402
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVYAYNVVINA 213
L E+S +GE T LI+ L G ++A A R + P DV+AYN ++
Sbjct: 61 LVELSASRDGEAPDVYLCTKLIRNLCRRGRTSDA-ARVLRAAEGSGSPVDVFAYNTLVAG 119
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CR G+ + AR L+ M + PD YTYT LI C G
Sbjct: 120 YCRYGHLDAARRLIGSMPV-----APDAYTYTPLIRVLCDRG 156
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R N+ K + LKEM R N T I +L ++GL+ +A+ +M++ C
Sbjct: 367 RWNDAK---ELLKEMVR--NNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVG 421
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
V YN ++N C G+ + A L M C P+ TYT L++ C
Sbjct: 422 VVTYNALVNGFCVQGHIDSALELFRSMP-----CKPNTITYTTLLTGLC 465
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L EM +G + T V +I + EG V++A R+ + C+PD +Y ++ L
Sbjct: 200 LDEMRAKGCTPNIVTYNV--IINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGL 257
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
C ++ L +M C P+ T+ +LI +C+ GM
Sbjct: 258 CASKRWDDVEELFAEMMEKN--CMPNEVTFDMLIRFFCRGGM 297
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y Y +I LC G A LL+ M G C P+V TYT+L+ + CK
Sbjct: 140 PDAYTYTPLIRVLCDRGRVADALSLLDDMLRRG--CQPNVVTYTVLLEAMCK 189
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + +I +L +E V EA+ F+ + RP YN ++ LC+ + A L M
Sbjct: 561 TFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYM 620
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
G C P+ TY ILI + G+
Sbjct: 621 VSNG--CMPNESTYIILIEGLAREGL 644
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T T L+ L ++ A M C P+V +NV++N C+ G ++A L+E
Sbjct: 454 TITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVE 513
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
QM G C P++ TY L K
Sbjct: 514 QMMEHG--CTPNLITYNTLFDGITK 536
>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
Length = 592
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 149 KGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
K +F EM G+ +L T T L+ + GLV EA++ F+++++ R ++ Y
Sbjct: 405 KSAQNFFDEMLSAGHIPDLYTHCT---LLGGYFKNGLVEEAMSHFHKLERRREDTNIQIY 461
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
VI+ LC+ G +KA E++ L G PDV TYT +IS YC+ G+
Sbjct: 462 TAVIDGLCKNGKLDKAHATFEKLPLIGLH--PDVITYTAMISGYCQEGL 508
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L ++G +A M+Q +P+ Y++VI+A C+ G + A LL +M+ P
Sbjct: 188 LCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSI--P 245
Query: 239 PDVYTYTILISSYCK 253
PD++TY+ LI + CK
Sbjct: 246 PDIFTYSTLIDALCK 260
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
C +G F G + + F K RR E T +I L + G +++A ATF +
Sbjct: 427 CTLLGGYFKNGLVEEAMSHFHKLERRR---EDTNIQIYTAVIDGLCKNGKLDKAHATFEK 483
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ PDV Y +I+ C+ G ++A+ +L +ME G C D TY +++ + +
Sbjct: 484 LPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNG--CLADNRTYNVIVRGFLR 540
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T + +I ++G+++ A + MKQ PD++ Y+ +I+ALC++ + R L
Sbjct: 213 TCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLF- 271
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+E+ P+V T+ +I CK G
Sbjct: 272 -LEMIHLNIYPNVCTFNSVIDGLCKEG 297
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L++ L E V +A+ F ++ ++ C P+ Y V+N LC+ G+ KA LL ME
Sbjct: 148 LLRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQG 207
Query: 234 GFRCPPDVYTYTILISSYCKYGM 256
+ P+ Y+I+I ++CK GM
Sbjct: 208 STK--PNTCIYSIVIDAFCKDGM 228
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + + G L EM ++ ++ T ST LI L + F M
Sbjct: 223 FCKDGMLDGATSLLNEMKQKSIPPDIFTYST---LIDALCKLSQWENVRTLFLEMIHLNI 279
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
P+V +N VI+ LC+ G A ++ M G PDV TY ++I Y
Sbjct: 280 YPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGV--DPDVITYNMIIDGY 328
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L +EG V +A M + PDV YN++I+ G ++AR + + M
Sbjct: 285 TFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSM 344
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
P++ +Y ILI+ Y +
Sbjct: 345 INKSIE--PNIISYNILINGYAR 365
>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 680
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEA 188
NEVT + F RG V+ L++MS+ G T +T C +I + ++G V++A
Sbjct: 291 NEVTFDMLVRFFCRGGMVERAIQVLQQMSQHG----CTPNTTLCNIVINAICKQGRVDDA 346
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
M + C PD +Y V+ LCR G + A+ LL +M CPP+ T+ I
Sbjct: 347 YDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRK--NCPPNEVTFNTFI 404
Query: 249 SSYCKYGM 256
C+ G+
Sbjct: 405 CILCQKGL 412
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
M +RG V T TV L++ + + EA+ M+ C P++ YNV+IN +CR
Sbjct: 178 MLQRGCQPSVVTYTV--LLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCRE 235
Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
G + A+ +L ++ GF+ PD+ +YT ++ C
Sbjct: 236 GRVDDAKEILNRLSSYGFQ--PDIVSYTTVLKGLC 268
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E CK G F NV L EM +G + T V +I + EG V++A
Sbjct: 195 EAVCKSSG--FGEAMNV------LDEMRAKGCTPNIVTYNV--IINGMCREGRVDDAKEI 244
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
R+ + +PD+ +Y V+ LC ++ + L +M +C P+ T+ +L+ +
Sbjct: 245 LNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEM--VDKKCVPNEVTFDMLVRFF 302
Query: 252 CKYGM 256
C+ GM
Sbjct: 303 CRGGM 307
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 144 RGNNVKGLWD----FLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
RG G W+ L EM R+ VT +T C +L ++GL+ +A+ M ++
Sbjct: 370 RGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFIC---ILCQKGLIEQAIKLIELMPEY 426
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C + YN +++ C G + A L LP C P+ TYT L++ C
Sbjct: 427 GCSVGIVTYNALVHGFCVQGRVDSALELFNN--LP---CEPNTITYTTLLTGLC 475
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T + ++ VL E EA+ + ++ RP V YN ++ ALC+ ++A
Sbjct: 564 GVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQA 623
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
M G C P+ TY ILI G+
Sbjct: 624 IDFFAYMVSNG--CMPNESTYIILIEGLAHEGL 654
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
+G V+ AL F + C P+ Y ++ LC + A LL +M CP +
Sbjct: 445 QGRVDSALELFNNLP---CEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKD--CPLNA 499
Query: 242 YTYTILISSYCKYG 255
T+ +L+S +C+ G
Sbjct: 500 VTFNVLVSFFCQKG 513
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R V + L +S G ++V+ +TV +K L ++ F M +C
Sbjct: 232 MCREGRVDDAKEILNRLSSYGFQPDIVSYTTV---LKGLCAARRWDDVKVLFAEMVDKKC 288
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ +++++ CR G +A +L+QM G C P+ I+I++ CK G
Sbjct: 289 VPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHG--CTPNTTLCNIVINAICKQG 341
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ ++EM+ +G V T T+ ++ L G V+EA F++M + C + AYN +I
Sbjct: 30 LEMVEEMTEKGVNPDVATYTI--IVDRLCRAGKVDEADELFHKMIERGCSANTVAYNALI 87
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N LC+ N +A LLE+M G+ PD TY ++S C+ G
Sbjct: 88 NGLCKDENIERAYKLLEEMASKGYE--PDNITYNTILSGLCRMG 129
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187
F + + C + + + V L+EMS+ G V T + L+ L + LV++
Sbjct: 288 FSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNI--LLDGLCKTNLVDK 345
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A F M C PD+ +Y+VV+N LC+ + AR L ++M + PDV T+ IL
Sbjct: 346 AHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRM--IERKLVPDVVTFNIL 403
Query: 248 ISSYCKYG 255
+ CK G
Sbjct: 404 MDGLCKAG 411
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 7/144 (4%)
Query: 112 INKATEFYH-WVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTT 169
+++A E +H +ER N V + + N++ + L+EM+ +G + +T
Sbjct: 61 VDEADELFHKMIERGCS--ANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITY 118
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T+ + L G V+EA F M PDV AYN +++AL + G +A L +
Sbjct: 119 NTI---LSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKT 175
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
M++ + PD+ TY LI +C+
Sbjct: 176 MDMADRKVAPDLITYNTLIDGFCR 199
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 158 MSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
M+ +G ++VT ST+ I L + G V EAL M + PDV Y ++++ LCR
Sbjct: 1 MAEKGFEPDVVTYSTI---ISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCR 57
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
G ++A L +M G C + Y LI+ CK
Sbjct: 58 AGKVDEADELFHKMIERG--CSANTVAYNALINGLCK 92
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV Y+ +I+ LC+ G +A ++E+M G PDV TYTI++ C+ G
Sbjct: 7 EPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVN--PDVATYTIIVDRLCRAG 59
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 10/129 (7%)
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGL 184
+ + VT + + AR +N+ + K+M G NG +T + ++ G
Sbjct: 218 YMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNG-----ATYSIVLSGHCRVGN 272
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+ L + M + R PDV N VI+ LC+ + A +LE+M G PDV TY
Sbjct: 273 MARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIG--AVPDVVTY 330
Query: 245 TILISSYCK 253
IL+ CK
Sbjct: 331 NILLDGLCK 339
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
+ K L D + E + +G T T L+ L + +EA+ F M + DV
Sbjct: 414 DEAKDLLDVMSEHNVLPDG-----VTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVL 468
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+N+V+ LCR G +A + M PDV TYT L+++ + G
Sbjct: 469 PHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAG 518
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++A F RM + + PDV +N++++ LC+ G ++A+ LL+ M PD T
Sbjct: 378 VHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVM--SEHNVLPDGVTC 435
Query: 245 TILISSYCK 253
T L+ C+
Sbjct: 436 TTLMHGLCR 444
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 154 FLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
F K M + +GE T T L+ L E G V++A+ F +M C PD AYN ++N
Sbjct: 489 FFKSMVK-SDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMN 547
Query: 213 ALCRVGNFNKARFLLEQMELPGF 235
L + G +A L + M+ GF
Sbjct: 548 GLRKQGRHIQADRLTQAMKEKGF 570
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 150 GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
GL+ + R+ +L+T +T LI +EA+ F + PD YN
Sbjct: 171 GLFKTMDMADRKVAPDLITYNT---LIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNS 227
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ L R N ++A + ++M G C P+ TY+I++S +C+ G
Sbjct: 228 ILLGLARKSNMDEAEEMFKKMVDSG--CAPNGATYSIVLSGHCRVG 271
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T ++ L + ++EA F +M C P+ Y++V++ CRVGN +
Sbjct: 217 GYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARC 276
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
L E+M F PDV +I CK
Sbjct: 277 LELYEEMTEKRF--SPDVLLCNAVIDMLCK 304
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 175 LIKVLGEEGLVNEALATF--YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
L+ L +EG V EA F M + PD+ YN +I+ CRV ++A L + +
Sbjct: 156 LLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIA 215
Query: 233 PGFRCPPDVYTYTILI 248
G+ PD TY ++
Sbjct: 216 KGYM--PDTVTYNSIL 229
>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
Length = 1107
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALA 190
+ CKE + ARG +EM RG LV T T +I G+ G +++ +
Sbjct: 138 DCMCKEGDVEAARG--------LFEEMKFRG---LVPDTVTYNSMIDGFGKVGRLDDTVC 186
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F MK C PDV YN +IN C+ G +M+ G + P+V +Y+ L+ +
Sbjct: 187 FFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLK--PNVVSYSTLVDA 244
Query: 251 YCKYGM 256
+CK GM
Sbjct: 245 FCKEGM 250
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 6/149 (4%)
Query: 108 VTLG-INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL 166
+ LG + +A + + ++RF F +C + FA+ + F K+M G G
Sbjct: 71 IDLGMLEEAIQCFSKMKRF-RVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI--GAGAR 127
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
T T +I + +EG V A F MK PD YN +I+ +VG +
Sbjct: 128 PTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCF 187
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
E+M+ C PDV TY LI+ +CK+G
Sbjct: 188 FEEMK--DMCCEPDVITYNALINCFCKFG 214
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 37/116 (31%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFR----------------------------------- 199
L VL + G++ EA+ F +MK+FR
Sbjct: 66 LFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAG 125
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RP V+ YN++I+ +C+ G+ AR L E+M+ G PD TY +I + K G
Sbjct: 126 ARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGL--VPDTVTYNSMIDGFGKVG 179
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+F +EM +GNG + + L+ +EG++ +A+ + M++ P+ Y Y +I+
Sbjct: 221 EFYREM--KGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 278
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
A C++GN + A L +M G +V TYT LI C
Sbjct: 279 ANCKIGNLSDAFRLGNEMLQVGVEW--NVVTYTALIDGLC 316
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++KA ++++ + F N M + N V+ ++M ++G LV T
Sbjct: 461 VSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKG---LVPDRT 517
Query: 172 V-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ ++G V EALA +M + + D+ AY ++ L KAR LE+M
Sbjct: 518 AYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 577
Query: 231 ELPGFRCPPDVYTYTILISSY 251
G P +V ++L Y
Sbjct: 578 IGEGIH-PDEVLCISVLKKHY 597
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E CKE GN + F +SRR L T + LI L G ++EA
Sbjct: 564 EGHCKE-------GNVTEAFSVFRFILSRR---VLQDVQTYSVLIHGLSRNGKMHEAFGI 613
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F +++ P+ + YN +I+ C+ GN +KA LLE+M + G PD+ TY ILI
Sbjct: 614 FSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGIN--PDIVTYNILIDGL 671
Query: 252 CKYG 255
CK G
Sbjct: 672 CKAG 675
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R N++G L+EM NG T L+ +EG V E+ RM++
Sbjct: 426 LCRCGNLQGTNAILREMVM--NGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGIL 483
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV+ YN +I C+ +AR L ME+ R P+ +TY I Y K G
Sbjct: 484 PDVFCYNSLIIGFCKAKRMEEARTYL--MEMLERRLRPNAHTYGAFIDGYSKAG 535
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T LI ++G V++A M PD+ YN++I+ LC+ G +A
Sbjct: 621 GLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERA 680
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ L + +E G P+ TY ++ YCK
Sbjct: 681 KNLFDDIEGRGL--TPNCVTYAAMVDGYCK 708
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A MK+ + P V Y+V+IN LCR GN +L +M + G + P+ YT L
Sbjct: 400 AFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLK--PNAVVYTTL 457
Query: 248 ISSYCKYG 255
++++ K G
Sbjct: 458 MTAHAKEG 465
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T LI+ +EG V EA + F + R DV Y+V+I+ L R G ++A
Sbjct: 551 GVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEA 610
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++ G P+ +TY LIS CK G
Sbjct: 611 FGIFSELQEKGLL--PNAFTYNSLISGSCKQG 640
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 15/76 (19%)
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNF-----------NKARFLLEQMELPGFRCP-- 238
F M + PDVY Y +I+A C+VGN KAR L E +EL
Sbjct: 212 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKG 271
Query: 239 --PDVYTYTILISSYC 252
PD+YTY ILI+ +C
Sbjct: 272 LVPDLYTYDILINGFC 287
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + G++ EA + M++ P Y +++ +GN ++ L E+M
Sbjct: 802 TYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM 861
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PD TY ++I +YC+ G
Sbjct: 862 VAKGIE--PDKMTYYVMIDAYCREG 884
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 147 NVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
NV L+EM +G N ++VT + LI L + G + A F ++ P+
Sbjct: 641 NVDKASQLLEEMCIKGINPDIVTYNI---LIDGLCKAGEIERAKNLFDDIEGRGLTPNCV 697
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
Y +++ C+ N A LLE+M L G PPD + Y ++++ CK
Sbjct: 698 TYAAMVDGYCKSKNPTAAFQLLEEMLLRGV--PPDAFIYNVILNFCCK 743
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 190 ATFYRMKQFRCR---PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
A F +++ R PD + YNV++N C+ F KA L ++M GF ++
Sbjct: 714 AAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF---ASTVSFNT 770
Query: 247 LISSYCKYG 255
LI YCK G
Sbjct: 771 LIEGYCKSG 779
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + +AL M + PD Y+++I CR N +A LL++M+ + P V
Sbjct: 360 GKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMK--KRKLAPTVL 417
Query: 243 TYTILISSYCKYG 255
TY+++I+ C+ G
Sbjct: 418 TYSVIINGLCRCG 430
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 179 LGEEG-LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
+GE+ L++EA+ M PD+Y Y+++IN C +A+ +L +M G +
Sbjct: 250 MGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLK- 308
Query: 238 PPDVYTYTILISSYCKYG 255
P+ TY LI + + G
Sbjct: 309 -PEPITYNALIDGFMRQG 325
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME-LPGFRCPPDV 241
G + EA+ F K F RP + + N ++ L + NK + + + + PDV
Sbjct: 168 GFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLK---GNKVELFWKVFDGMCAHKVLPDV 224
Query: 242 YTYTILISSYCKYG 255
YTYT +IS++CK G
Sbjct: 225 YTYTNMISAHCKVG 238
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 67/167 (40%), Gaps = 23/167 (13%)
Query: 104 NPQKVTL-----GINKATEFYHWVERFFHFFH---------NEVTCKEMGIVFARGNNVK 149
NP VT G+ KA E +ER + F N VT M + + N
Sbjct: 658 NPDIVTYNILIDGLCKAGE----IERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPT 713
Query: 150 GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
+ L+EM RG V ++ +E +AL F M + + ++N
Sbjct: 714 AAFQLLEEMLLRGVPPDAFIYNV--ILNFCCKEEKFEKALDLFQEMLE-KGFASTVSFNT 770
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+I C+ G +A LLE+M F P+ TYT LI CK GM
Sbjct: 771 LIEGYCKSGKLQEANHLLEEMIEKQF--IPNHVTYTSLIDHNCKAGM 815
>gi|297842914|ref|XP_002889338.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335180|gb|EFH65597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 712
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+ I+ RG D EM RR G + T LI + +V++A F M+
Sbjct: 183 LSILLKRGRTGMA-HDMFDEM-RRTYGVTPDSYTFNTLISGFCKNSMVDQAFTIFKEMEL 240
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ C PDV YN +I+ LCR G A LL M P++ +YT L+ YC
Sbjct: 241 YSCNPDVVTYNTIIDGLCRAGKVKIAHNLLNGMLKKATAVHPNIVSYTTLLRGYC 295
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Query: 118 FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL-VTTSTVTCLI 176
F+ WV F H E + M R N+ +FL + +R NG + + LI
Sbjct: 90 FFDWVYNK-GFSHKEQSFFLMLEFLGRARNLNAARNFLFSIEKRSNGCVKLQDRYFNSLI 148
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
+ G GL E++ F MK+ P V +N +++ L + G A + ++M +
Sbjct: 149 RSYGNAGLFQESVNLFQTMKKMGISPSVLTFNSLLSILLKRGRTGMAHDMFDEMR-RTYG 207
Query: 237 CPPDVYTYTILISSYCKYGM 256
PD YT+ LIS +CK M
Sbjct: 208 VTPDSYTFNTLISGFCKNSM 227
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LIK + G ++ A+ F M + PD +Y+V+I LC F+KA L ++
Sbjct: 357 TFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCLRNEFDKAETLFNEL 416
Query: 231 -----ELPGFRCPPDVYTYTILISSYCKYG 255
L C P Y ++ C G
Sbjct: 417 FEKEVLLGKNECKPLAAAYNLMFEYLCANG 446
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R VK + L M ++ + T L++ + ++EAL F+ M +P+
Sbjct: 259 RAGKVKIAHNLLNGMLKKATAVHPNIVSYTTLLRGYCMKQEIDEALLVFHEMLTRGLKPN 318
Query: 204 VYAYNVVINALCRVGNFNKAR-FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN +I L +++ + FL+ F PD T+ ILI ++C G
Sbjct: 319 AVTYNTLIKGLSEAHRYDEIKGFLIGGDAFTTF--SPDACTFNILIKAHCDAG 369
>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
Length = 820
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
GNG T LI L + G V+EA + F ++ RP+ +N VIN LC+ G F
Sbjct: 397 EGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKF 456
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ A LE+M G C PD YTY+ I + CK
Sbjct: 457 DVACTFLEKMVSAG--CAPDTYTYSPFIENLCK 487
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + T T ++ EG ++ A+ F MK C P+V+ YN ++ C VG K
Sbjct: 294 NGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYK 353
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A LL+QM G PDV TY +LI C G
Sbjct: 354 AMALLDQMRECGVE--PDVVTYNLLIRGQCIDG 384
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
VTC + + R + G + M +G V T +++ G V +A+A
Sbjct: 301 VTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNA--MVQGFCNVGKVYKAMALL 358
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+M++ PDV YN++I C G+ A LL ME G D YTY +LI + C
Sbjct: 359 DQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAA--DQYTYNVLIDALC 416
Query: 253 KYG 255
K G
Sbjct: 417 KTG 419
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R + D +M RG + + LI+ E G V+EAL F ++Q
Sbjct: 174 YCRTQQLDVAQDLFDKMPLRGFSQ--DAVSYAALIEGFCETGRVDEALELFRELEQ---- 227
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD+Y + ++ LC + ++L++M+ G+R P Y L+ +C+
Sbjct: 228 PDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWR--PATRAYAALVDLWCR 277
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI+ +G + A M+ D Y YNV+I+ALC+ G ++A L + +
Sbjct: 372 TYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGL 431
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G R P+ T+ +I+ CK G
Sbjct: 432 EYRGIR--PNSVTFNTVINGLCKGG 454
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T +T LI+ L + A M + RPD + +N +I CR + A+ L
Sbjct: 128 TGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLF 187
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++M L GF D +Y LI +C+ G
Sbjct: 188 DKMPLRGFS--QDAVSYAALIEGFCETG 213
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 9/144 (6%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+++A E + +E+ + H + G+ AR +GL+ L++M G T
Sbjct: 215 VDEALELFRELEQPDMYTHAALV---KGLCDARRGE-EGLY-MLQKMKELGWRP--ATRA 267
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
L+ + E EA M P V+NA CR G + A + E M+
Sbjct: 268 YAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMK 327
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
L G C P+V+TY ++ +C G
Sbjct: 328 LKG--CEPNVWTYNAMVQGFCNVG 349
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL++M G T T + I+ L + E L+ M Q +P Y +VI+
Sbjct: 462 FLEKMVSAGCAP--DTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDR 519
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L + N+ A + QM G C PDV TYT + +YC G
Sbjct: 520 LFKERNYGLATRIWGQMVSLG--CSPDVVTYTTSVRAYCNEG 559
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P YN +I ALCR + A+ L M G+R PD +T+ LI YC+
Sbjct: 127 PTGATYNALIRALCRRADLRHAQRYLSLMVRSGWR--PDAFTFNSLILGYCR 176
>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 445
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F N+K + L EM + V T + LI L +EG ++EA++ F MK
Sbjct: 246 FCIMGNLKEAFSLLNEMKLKNINPDVYTFNI--LIDALAKEGKIDEAMSLFEEMKHKNMF 303
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++ Y +I+ LC+ + +A L ++M+ G + P+VY+YTIL+ + CK G
Sbjct: 304 PNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQ--PNVYSYTILLDALCKGG 355
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 12/161 (7%)
Query: 104 NPQKVTLG-INKATEFYHWVERFFHFFHNEVTCKEMGI-VFARGNNVKGLWDF-----LK 156
+P +TL + K F ++R HF H++V + + + G + GL +
Sbjct: 128 HPNAITLNTLIKGLCFCGEIKRALHF-HDKVVAQGFQLDQVSYGTLINGLCKAGETKAVA 186
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
+ R+ G V V T +I L + L+ +A + M P+V+ Y +I+
Sbjct: 187 RLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGF 246
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C +GN +A LL +M+L PDVYT+ ILI + K G
Sbjct: 247 CIMGNLKEAFSLLNEMKLKNIN--PDVYTFNILIDALAKEG 285
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L + + A+A +MK+ +P+VY+Y ++++ALC+ G A+ + +
Sbjct: 308 TYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHL 367
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
+ G+ +V TY ++I+ CK G+
Sbjct: 368 LVKGYHL--NVRTYNVMINGLCKAGL 391
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D EM +G V T T LI G + EA + MK PDVY +N++I+
Sbjct: 222 DLYSEMIVKGISPNVFTYTT--LIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILID 279
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
AL + G ++A L E+M+ P++ TYT LI CK
Sbjct: 280 ALAKEGKIDEAMSLFEEMKHKNMF--PNIVTYTSLIDGLCK 318
>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
Length = 591
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 149 KGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
K +F EM G+ +L T T L+ + GLV EA++ F+++++ R ++ Y
Sbjct: 405 KSAQNFFDEMLSAGHIPDLYTHCT---LLGGYFKNGLVEEAMSHFHKLERRREDTNIQIY 461
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
VI+ LC+ G +KA E++ L G PDV TYT +IS YC+ G+
Sbjct: 462 TAVIDGLCKNGKLDKAHATFEKLPLIGLH--PDVITYTAMISGYCQEGL 508
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T T LI+ L E V +A+ F ++ ++ C P+ Y V+N LC+ G+ KA LL
Sbjct: 144 TFTTLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRL 203
Query: 230 MELPGFRCPPDVYTYTILISSYCKYGM 256
ME + P+ TYTI+I ++CK GM
Sbjct: 204 MEQGSTK--PNTRTYTIVIDAFCKDGM 228
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L ++G +A M+Q +P+ Y +VI+A C+ G + A LL +M+ P
Sbjct: 188 LCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSI--P 245
Query: 239 PDVYTYTILISSYCK 253
PD++TY+ LI + CK
Sbjct: 246 PDIFTYSTLIDALCK 260
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T T +I ++G+++ A + MKQ PD++ Y+ +I+ALC++ + R L
Sbjct: 213 TRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLF- 271
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+E+ P+V T+ +I CK G
Sbjct: 272 -LEMIHLNIYPNVCTFNSVIDGLCKEG 297
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
C +G F G + + F K RR E T +I L + G +++A ATF +
Sbjct: 427 CTLLGGYFKNGLVEEAMSHFHKLERRR---EDTNIQIYTAVIDGLCKNGKLDKAHATFEK 483
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ PDV Y +I+ C+ G ++A+ +L +ME G C D TY +++ + +
Sbjct: 484 LPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNG--CLADNRTYNVIVRGFLR 540
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L +EG V +A M + PDV YN++I+ G ++AR + + M
Sbjct: 285 TFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSM 344
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
PD+ +Y ILI+ Y +
Sbjct: 345 INKSIE--PDIISYNILINGYAR 365
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + + G L EM ++ ++ T ST LI L + F M
Sbjct: 223 FCKDGMLDGATSLLNEMKQKSIPPDIFTYST---LIDALCKLSQWENVRTLFLEMIHLNI 279
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
P+V +N VI+ LC+ G A ++ M G PDV TY ++I Y
Sbjct: 280 YPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGV--DPDVITYNMIIDGY 328
>gi|357119238|ref|XP_003561352.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20740-like [Brachypodium distachyon]
Length = 732
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 80/207 (38%), Gaps = 23/207 (11%)
Query: 67 GRQTGFRHRTP--------LKQRILKKEADNIANNVLVLG-PAAYRNPQKVTL-----GI 112
GRQ GFRH P L L AD + + + G P ++ PQ L
Sbjct: 155 GRQKGFRHCFPAFHALASLLSAAGLPAAADQLPDLIRAHGKPVSH--PQLTLLVRLHTAA 212
Query: 113 NKATEFYHWVERFFHFFHNEV---TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTT 169
+ + + RF H F + C + A +V+ EMS G + T
Sbjct: 213 RRPLRALYTLRRFRHEFSVQPQVHACNRVLGALAAAGHVEDALKLFDEMSEGGVRPMPVT 272
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+ +++ LG G+ L RM+ CRPDV+ Y ++ + R G+ + E+
Sbjct: 273 FAI--IVRALGHAGMTERILEMIGRMRDEVCRPDVFVYTALVKTMMRRGHIEGCIRVWEE 330
Query: 230 MELPGFRCPPDVYTYTILISSYCKYGM 256
M G PD Y ++ C GM
Sbjct: 331 MGTDGVE--PDAMAYATMVGGLCNAGM 355
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
+ T + +I EEG + EA + + M + P + AY ++ LC++G N A L+
Sbjct: 550 SCTYSHMIPCFVEEGNIEEACSCYNSMMKAEWIPSISAYCSLVKGLCKIGEINAAVSLVT 609
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
L P + YT+ I C+
Sbjct: 610 DC-LGNVENGPMEFKYTLTILEACR 633
>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 642
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 2/153 (1%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
R+ ++ + IN +F+ W + +F H+ T + ++ ++E+ R
Sbjct: 97 RSILEIDVEINVKIQFFKWAGKRRNFQHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNT 156
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
V+ + ++ L+K LG +V++AL+ FY+ K +C+P YN VI L + G K
Sbjct: 157 YVS-VSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEK 215
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +M G C PD TY+ LISSY K G
Sbjct: 216 VHEVYTEMCNEG-DCFPDTITYSALISSYEKLG 247
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
V++ +IK G+ G ++EA+ F MK PDVYAYN +++ + + G N+A L
Sbjct: 477 VSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSL 536
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L +ME G C D+ ++ I+++ + + G+
Sbjct: 537 LRKMEENG--CRADINSHNIILNGFARTGV 564
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + D EM +G+G V L+ + + G++NEA + +M++ CR
Sbjct: 489 FGKCGKLSEAVDLFNEMKNQGSGPDVYA--YNALMSGMVKAGMINEANSLLRKMEENGCR 546
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
D+ ++N+++N R G +A + E ++ G + PD TY L+ + GM
Sbjct: 547 ADINSHNIILNGFARTGVPRRAIEMFETIKHSGIK--PDGVTYNTLLGCFAHAGM 599
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+GI F G K L D +EM R G T T T LIK LG+ G V+EA + M +
Sbjct: 275 LGIYFKVGKVEKAL-DLFEEMKRAGCSP--TVYTYTELIKGLGKAGRVDEAYGFYKDMLR 331
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
PDV N ++N L +VG + + +M + +RC P V +Y +I +
Sbjct: 332 DGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGM--WRCTPTVVSYNTVIKA 382
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFR 199
+ V + F K+M R G +T V L+ +LG+ G V E F M +R
Sbjct: 313 LGKAGRVDEAYGFYKDMLRDG----LTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWR 368
Query: 200 CRPDVYAYNVVINALCRV-GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C P V +YN VI AL + ++ ++M+ P +TY+ILI YCK
Sbjct: 369 CTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADS--VSPSEFTYSILIDGYCK 421
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T + LI + G + A+ F MK +P Y ++ +VG KA L E
Sbjct: 233 TITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFE 292
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M+ G C P VYTYT LI K G
Sbjct: 293 EMKRAG--CSPTVYTYTELIKGLGKAG 317
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L+ + + G V +AL F MK+ C P VY Y +I L + G ++A
Sbjct: 267 TEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFY 326
Query: 228 EQMELPGFRCPPDV 241
+ M G PDV
Sbjct: 327 KDMLRDGL--TPDV 338
>gi|413953460|gb|AFW86109.1| hypothetical protein ZEAMMB73_051838 [Zea mays]
Length = 240
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK LG+ G +++A+ F M + C PDVYAYN +++ L R G ++A + +M+ G
Sbjct: 87 MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMIDEALSTMRRMQEHG 146
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD+ +Y I+++ K G
Sbjct: 147 --CIPDINSYNIILNGLAKTG 165
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L G+++EAL+T RM++ C PD+ +YN+++N L + G ++A +L M+
Sbjct: 122 LMSGLARTGMIDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQST 181
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
PDV +Y ++ + GM
Sbjct: 182 VS--PDVVSYNTVLGALSHAGM 201
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ L + G + A+ MKQ PDV +YN V+ AL G F +A L+++M G
Sbjct: 157 ILNGLAKTGGPHRAMEMLSNMKQSTVSPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLG 216
Query: 235 FRCPPDVYTYTILISSYCK 253
F D+ TY+ ++ + K
Sbjct: 217 FEY--DLITYSSILEAIGK 233
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 154 FLKEMSRRGNGELVTTSTVTC-LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L+EM +G C LI LG+ + A F +K+ Y V+I
Sbjct: 33 LLEEMDEKG---FPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIK 89
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L + G + A + ++M G C PDVY Y L+S + GM
Sbjct: 90 HLGKAGRLDDAINMFDEMNKLG--CAPDVYAYNALMSGLARTGM 131
>gi|159464329|ref|XP_001690394.1| hypothetical protein CHLREDRAFT_114572 [Chlamydomonas reinhardtii]
gi|158279894|gb|EDP05653.1| predicted protein [Chlamydomonas reinhardtii]
Length = 287
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + V+ D ++M RRG V T + LI + G AL F +M + C
Sbjct: 149 AYGKKGQVEKALDIFRDMIRRGCERNVIT--YSSLISACEKAGRWEMALELFSKMHKENC 206
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P+V YN +I A G++ KA L EQM+ G C PD TY LI++Y + G
Sbjct: 207 KPNVVTYNSLIAACSHGGHWEKASELFEQMQTQG--CKPDSITYCGLITAYERGG 259
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 150 GLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G W+ E+ + + E + VT LI G +A F +M+ C+PD Y
Sbjct: 189 GRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITY 248
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+I A R G + +A EQM+ G C PD + L+
Sbjct: 249 CGLITAYERGGQWRRALKAFEQMQSQG--CHPDAAVFNSLM 287
>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
[Vitis vinifera]
Length = 875
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 4/144 (2%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F++W++R F H+ T M + R + L EM R G V T
Sbjct: 362 ALGFFYWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVT--YNR 419
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G +NEA++ F RM++ C+PD Y +I+ + G + A + ++M+
Sbjct: 420 LIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAH 479
Query: 235 FRCPPDVYTYTILISSYCKYGMQT 258
PD +TY+++I+ K G T
Sbjct: 480 LS--PDTFTYSVIINCLGKAGHLT 501
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T + +I LG+ G + A F M C P++ YN++I + N+ A L
Sbjct: 484 TFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYR 543
Query: 229 QMELPGFRCPPDVYTYTILI 248
M+ GF+ PD TY+I++
Sbjct: 544 DMQNAGFQ--PDKVTYSIVM 561
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT M + A+ N + ++M G + VT S V ++VLG G + EA
Sbjct: 518 NLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIV---MEVLGHCGHLEEAE 574
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
A F MK+ PD Y ++++ +VGN K+ + M G C P+V T L+S
Sbjct: 575 AIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGL-C-PNVPTCNSLLS 632
Query: 250 SYCK 253
++ +
Sbjct: 633 AFLR 636
>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Glycine max]
Length = 882
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F++W++R F+H+ T M + R + L++M + G V T
Sbjct: 369 ALSFFYWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVV--TYNR 426
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G + EAL F +M++ C PD Y +I+ + G + A + E+M+ G
Sbjct: 427 LIHSYGRANYLGEALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVG 486
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD +TY+++I+ K G
Sbjct: 487 LS--PDTFTYSVMINCLGKSG 505
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T + +I LG+ G ++ A F M C P++ YN++I + N+ A L
Sbjct: 491 TFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYR 550
Query: 229 QMELPGFRCPPDVYTYTILIS--SYCKY 254
M+ GF+ PD TY+I++ YC Y
Sbjct: 551 DMQNAGFK--PDKVTYSIVMEVLGYCGY 576
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + +++VLG G + EA A F+ MKQ PD Y ++I+ + GN KA M
Sbjct: 563 TYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAGNVEKAWEWYHAM 622
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G P+V T L+S++ +
Sbjct: 623 LRAGLL--PNVPTCNSLLSAFLR 643
>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g02150
gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 761
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALA 190
+ CKE + ARG +EM RG LV T T +I G+ G +++ +
Sbjct: 270 DCMCKEGDVEAARG--------LFEEMKFRG---LVPDTVTYNSMIDGFGKVGRLDDTVC 318
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F MK C PDV YN +IN C+ G +M+ G + P+V +Y+ L+ +
Sbjct: 319 FFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLK--PNVVSYSTLVDA 376
Query: 251 YCKYGM 256
+CK GM
Sbjct: 377 FCKEGM 382
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 93/246 (37%), Gaps = 33/246 (13%)
Query: 39 TQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHR---------------------TP 77
T P + V LK P+ F+ + + GF+H +
Sbjct: 105 TLAPIWVPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSV 164
Query: 78 LKQRILKKEADNIAN------NVLVLGPAAYRNPQKVTLGINKATEFYHWVERF--FHFF 129
LK+ +L K ++ + NV V G + V + + E + F F
Sbjct: 165 LKEMVLSKADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVF 224
Query: 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189
+C + FA+ + F K+M G G T T +I + +EG V A
Sbjct: 225 PKTRSCNGLLHRFAKLGKTDDVKRFFKDMI--GAGARPTVFTYNIMIDCMCKEGDVEAAR 282
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
F MK PD YN +I+ +VG + E+M+ C PDV TY LI+
Sbjct: 283 GLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMK--DMCCEPDVITYNALIN 340
Query: 250 SYCKYG 255
+CK+G
Sbjct: 341 CFCKFG 346
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+F +EM +GNG + + L+ +EG++ +A+ + M++ P+ Y Y +I+
Sbjct: 353 EFYREM--KGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 410
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
A C++GN + A L +M G +V TYT LI C
Sbjct: 411 ANCKIGNLSDAFRLGNEMLQVGVE--WNVVTYTALIDGLC 448
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++KA ++++ + F N M + N V+ ++M ++G LV T
Sbjct: 593 VSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKG---LVPDRT 649
Query: 172 V-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ ++G V EALA +M + + D+ AY ++ L KAR LE+M
Sbjct: 650 AYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 709
Query: 231 ELPGFRCPPDVYTYTILISSY 251
G P +V ++L Y
Sbjct: 710 IGEGIH-PDEVLCISVLKKHY 729
>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
Length = 642
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 2/153 (1%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
R+ ++ + IN +F+ W + +F H+ T + ++ ++E+ R
Sbjct: 97 RSILEIDVEINVKIQFFKWAGKRRNFQHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNT 156
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
V+ + ++ L+K LG +V++AL+ FY+ K +C+P YN VI L + G K
Sbjct: 157 YVS-VSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEK 215
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +M G C PD TY+ LISSY K G
Sbjct: 216 VHEVYTEMCNEG-DCFPDTITYSALISSYEKLG 247
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
V++ +IK G+ G ++EA+ F MK PDVYAYN +++ + + G N+A L
Sbjct: 477 VSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSL 536
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L +ME G C D+ ++ I+++ + + G+
Sbjct: 537 LRKMEENG--CRADINSHNIILNGFARTGV 564
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + D EM +G+G V L+ + + G++NEA + +M++ CR
Sbjct: 489 FGKCGKLSEAVDLFNEMKNQGSGPDVYA--YNALMSGMVKAGMINEANSLLRKMEENGCR 546
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
D+ ++N+++N R G +A + E ++ G + PD TY L+ + GM
Sbjct: 547 ADINSHNIILNGFARTGVPRRAIEMFETIKHSGIK--PDGVTYNTLLGCFAHAGM 599
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+GI F G K L D +EM R G T T T LIK LG+ G V+EA + M +
Sbjct: 275 LGIYFKVGKVEKAL-DLFEEMKRAGCSP--TVYTYTELIKGLGKAGRVDEAYGFYKDMLR 331
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
PDV N ++N L +VG + + +M + +RC P V +Y +I +
Sbjct: 332 DGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGM--WRCTPTVVSYNTVIKA 382
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFR 199
+ V + F K+M R G +T V L+ +LG+ G V E F M +R
Sbjct: 313 LGKAGRVDEAYGFYKDMLRDG----LTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWR 368
Query: 200 CRPDVYAYNVVINALCRV-GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C P V +YN VI AL + ++ ++M+ P +TY+ILI YCK
Sbjct: 369 CTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADS--VSPSEFTYSILIDGYCK 421
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T + LI + G + A+ F MK +P Y ++ +VG KA L E
Sbjct: 233 TITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFE 292
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M+ G C P VYTYT LI K G
Sbjct: 293 EMKRAG--CSPTVYTYTELIKGLGKAG 317
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L+ + + G V +AL F MK+ C P VY Y +I L + G ++A
Sbjct: 267 TEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFY 326
Query: 228 EQMELPGFRCPPDV 241
+ M G PDV
Sbjct: 327 KDMLRDGL--TPDV 338
>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Brachypodium distachyon]
Length = 966
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ LKEM R+G + TST T +I L + V ++ F MK+ PDVY Y ++I
Sbjct: 437 FQILKEMMRKGF--VPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILI 494
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++ C+ G +AR ++M G C P+V TYT L+ +Y K
Sbjct: 495 DSFCKAGLIEQARSWFDEMRSVG--CSPNVVTYTALLHAYLK 534
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L + T T LI + ++G ++ A+ M C P+V Y +I+ L +VG KA
Sbjct: 673 GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKA 732
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL ME G C P+V TYT LI K G
Sbjct: 733 LNLLSLMEEKG--CSPNVVTYTALIDGLGKTG 762
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD Y VI LC+ K+ L ++M+ G PDVYTYTILI S+CK G+
Sbjct: 450 PDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVN--PDVYTYTILIDSFCKAGL 502
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I L + G + +AL M++ C P+V Y +I+ L + G + + L +QM
Sbjct: 715 TYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQM 774
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
G C P+ TY +LI+ C G+
Sbjct: 775 NSKG--CAPNYVTYRVLINHCCAAGL 798
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+EM R G V T T+ LI + GL+ +A + F M+ C P+V Y +++A
Sbjct: 474 LFQEMKRAGVNPDVYTYTI--LIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHA 531
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +A + +M C P+ TY+ LI CK G
Sbjct: 532 YLKSKQLIQAHDIFHRM--VDAACYPNAVTYSALIDGLCKAG 571
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT M ++ ++ + L M +G V T T LI LG+ G + +L
Sbjct: 712 NVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTA--LIDGLGKTGKADASLK 769
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME-------LPGFRC 237
F +M C P+ Y V+IN C G ++A LL++M+ L G+ C
Sbjct: 770 LFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHC 823
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 170 STVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
TV C +I L E L NEA++ +RM+ C P+V Y +++ + F + ++
Sbjct: 270 DTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRII 329
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
M G C P+ + L+ YC G
Sbjct: 330 NMMMTEG--CNPNPSLFNSLVHGYCNAG 355
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 4/138 (2%)
Query: 118 FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK 177
F+ W ER + H + + + + L+E+ + V + L++
Sbjct: 120 FFLWAERQVGYSHTGACYDALAEILGFEDPARTAERLLREIGE--DDREVLRRLLNVLVR 177
Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
GL +EAL R+K F RP YN ++ L G + ++M GF
Sbjct: 178 RCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGF-- 235
Query: 238 PPDVYTYTILISSYCKYG 255
D T + CK G
Sbjct: 236 CMDRSTIGYFAQALCKVG 253
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 177 KVLGEEGLVNEALATFYRMKQFRC--RPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
K++G G V + FY C P+V Y +I+ LC+ + A LL+ M G
Sbjct: 582 KLIGTSGNVE---SDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAG 638
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+ Y LI +CK G
Sbjct: 639 --CEPNQIVYDALIDGFCKIG 657
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + V++A M C P+ Y+ +I+ C++G + A+ + +M
Sbjct: 610 TYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRM 669
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G+ P V+TYT LI K G
Sbjct: 670 TKCGYL--PSVHTYTSLIDRMFKDG 692
>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Glycine max]
Length = 903
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T + V+ L+ L ++G +++A ++ +F P+++ YN +IN+LC+ G+ +KA L
Sbjct: 329 TEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLY 388
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
M L R P+ TY+ILI S+C+ G
Sbjct: 389 SNMSLMNLR--PNGITYSILIDSFCRSG 414
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG T T LI L + EA F + + + +P YNV+I CR G +K
Sbjct: 499 NGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDK 558
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A LLE M G PD YTY LIS C G
Sbjct: 559 AFELLEDMHQKGL--VPDTYTYRPLISGLCSTG 589
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
L+ + M+ R NG T + LI G ++ A++ F RM Q VYAYN +
Sbjct: 387 LYSNMSLMNLRPNG-----ITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSL 441
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
IN C+ G+ + A L +M G P T+T LIS YCK
Sbjct: 442 INGQCKFGDLSAAESLFIEMTNKGVE--PTATTFTSLISGYCK 482
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 149 KGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
K +D LK+M +G L + + T +I +EG +A + M C P+V Y
Sbjct: 662 KTFFDLLKDMHDQG---LRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTY 718
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++N LC+ G ++A L ++M+ PP+ TY + + K G
Sbjct: 719 TALMNGLCKAGEMDRAGLLFKRMQAANV--PPNSITYGCFLDNLTKEG 764
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G +++A + M RP+ Y+++I++ CR G + A ++M G
Sbjct: 371 LINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDG 430
Query: 235 FRCPPDVYTYTILISSYCKYG 255
VY Y LI+ CK+G
Sbjct: 431 I--GETVYAYNSLINGQCKFG 449
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T +T T LI ++ V +A + +M P+VY + +I+ LC +A L
Sbjct: 469 TATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELF 528
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+ EL + P TY +LI YC+ G
Sbjct: 529 D--ELVERKIKPTEVTYNVLIEGYCRDG 554
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LI+ +G +++A M Q PD Y Y +I+ LC G +KA+ +
Sbjct: 539 TEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFI 598
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+ + + + Y+ L+ YC+ G
Sbjct: 599 DDLHKQNVKL--NEMCYSALLHGYCQEG 624
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 15/115 (13%)
Query: 154 FLKEMSRRGN-------------GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
FL +++ GN G L T T +I+ + G +EA M +
Sbjct: 756 FLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGI 815
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y+ +I CR GN + L + M G PD+ Y +LI C G
Sbjct: 816 FPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLE--PDLVAYNLLIYGCCVNG 868
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
RPD Y + V+ ++C + +F +A+ + ME GF + TY +LI CK
Sbjct: 222 RPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLS--IVTYNVLIHGLCK 272
>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 545
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 67/130 (51%), Gaps = 6/130 (4%)
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLV 185
F N VT + + + + EM RG ++T +++ + + + V
Sbjct: 368 QIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSI---LDAICKNNHV 424
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
++A+ ++K+ +PD++ Y V+IN LC+VG + A+ + E + + G+ P++YTYT
Sbjct: 425 DKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGY--SPNIYTYT 482
Query: 246 ILISSYCKYG 255
LI+ +C G
Sbjct: 483 SLINGFCNKG 492
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
++ RR +G+LV + V + +I + ++ LVN+A + M R PDV Y+ +I+
Sbjct: 184 QLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGF 243
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C VG A L +M P+VYT++ILI +CK G
Sbjct: 244 CVVGKLKYAVDLFNRMISDNIN--PNVYTFSILIDGFCKEG 282
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI +EG V EA M + + DV YN +++ C V NKA+ L M
Sbjct: 270 TFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVM 329
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
G PDV++Y+I+I+ +CK M
Sbjct: 330 AQRGV--TPDVWSYSIMINGFCKIKM 353
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
CL+K VN+A + F M Q PDV++Y+++IN C++ ++A L E+M
Sbjct: 314 CLVK------QVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCK 367
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
+ P+V TY L+ CK G
Sbjct: 368 --QIFPNVVTYNSLVDGLCKSG 387
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N +T + + N+V L ++ +G + T TV LI L + G +++A
Sbjct: 407 NIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTV--LINGLCKVGRLDDAQK 464
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F + P++Y Y +IN C G F++ +L +M+ G C P+ TY ILI S
Sbjct: 465 VFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNG--CIPNAITYEILIHS 522
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 11/158 (6%)
Query: 96 VLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFL 155
+LG + L +++ EF F +TC + F++ ++K +
Sbjct: 64 ILGSLLKAKQYQTALSLSQQMEFNGIKPDF-------ITCNLLMNCFSQLGHIKFSFSVF 116
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
++ ++G T T+ LIK L +G V++AL ++ + D +Y +IN LC
Sbjct: 117 AKILKKGYHPDAVTFTI--LIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLC 174
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
RVG A LL +++ G P+V Y+ +I S CK
Sbjct: 175 RVGETKAAVQLLRRVD--GKLVRPNVVMYSTIIDSMCK 210
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 148 VKGLWDFLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
V +D EM S+R + ++VT S++ V+G+ + A+ F RM P+VY
Sbjct: 214 VNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGK---LKYAVDLFNRMISDNINPNVYT 270
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
++++I+ C+ G +A+ +L M + DV TY L+ YC
Sbjct: 271 FSILIDGFCKEGKVREAKNVLAVMMKKNVKL--DVVTYNSLMDGYC 314
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N K L++ M++RG V + ++ +I + +V+EA+ F M + P+V
Sbjct: 320 NKAKSLFNV---MAQRGVTPDVWSYSI--MINGFCKIKMVDEAMKLFEEMHCKQIFPNVV 374
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN +++ LC+ G + A L+++M G P ++ TY ++ + CK
Sbjct: 375 TYNSLVDGLCKSGRTSCALELVDEMHDRGQ--PSNIITYNSILDAICK 420
Score = 37.0 bits (84), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 172 VTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+TC L+ + G + + + F ++ + PD + ++I LC G +KA + ++
Sbjct: 94 ITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDK 153
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
+ GF+ D +Y LI+ C+ G
Sbjct: 154 VVAQGFQL--DQVSYGTLINGLCRVG 177
>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Brachypodium distachyon]
Length = 673
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
+G + EA + M C PD + Y+++I+ LC++G A LL +ME GF P +
Sbjct: 321 DGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGF--APSI 378
Query: 242 YTYTILISSYCKYGM 256
TYTIL+ S+C+ GM
Sbjct: 379 VTYTILLHSFCRNGM 393
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
FAR + + + M R TT T + + L G +EAL M + C
Sbjct: 145 AFARADCHTDVLSLYRRMVHRDRVP-PTTFTFSIAARALCRLGRADEALTMLRSMARHGC 203
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y VI+ALC G N+A LL++M L G C DV T+ ++ C G
Sbjct: 204 VPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMG--CSADVNTFNDIVHGLCTLG 256
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T LI L G +A++ M C D+ +YN +I ALCR GN +++
Sbjct: 478 GVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRS 537
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LL +M G + P+ +Y +LIS CK
Sbjct: 538 IMLLSEMAEKGIK--PNNVSYNLLISELCK 565
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQF 198
R NV L EM+ +G + + V+ LI L + V +AL M
Sbjct: 527 ALCRDGNVDRSIMLLSEMAEKG----IKPNNVSYNLLISELCKTRRVRDALELSKEMLNQ 582
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD+ YN +IN LC++G + A LLE++ D+ TY ILIS +CK
Sbjct: 583 ELTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVH--ADIITYNILISWHCK 635
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+ M+R G + T +I L +G VNEA M C DV +N +++
Sbjct: 194 MLRSMARHGC--VPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHG 251
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
LC +G +A L+++M + G C P+ TY L+ C
Sbjct: 252 LCTLGRLREAARLVDRMMIRG--CVPNAITYGFLLKGLC 288
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM---E 231
LIK L +G V+ ++ M + +P+ +YN++I+ LC+ A L ++M E
Sbjct: 524 LIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQE 583
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
L PD+ TY LI+ CK G
Sbjct: 584 L-----TPDIVTYNTLINGLCKMG 602
>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 806
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE IV R D +K+M++ +G + T LI +L + +EAL
Sbjct: 358 CKEKRIVEVR--------DLMKKMAKE-HGLVPDQVTYNTLIHMLTKHDHADEALWFLKD 408
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
++ R D Y+ +++ALC+ G ++A+ L+ +M L CPPDV TYT +++ +C+
Sbjct: 409 AQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEM-LSKGHCPPDVVTYTAVVNGFCRL 467
Query: 255 G 255
G
Sbjct: 468 G 468
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAY 207
+ LW FLK+ +G + + ++ L +EG ++EA M + C PDV Y
Sbjct: 401 EALW-FLKDAQEKGF--RIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTY 457
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V+N CR+G +KA+ LL+ M G + P+ +YT L++ C+ G
Sbjct: 458 TAVVNGFCRLGEVDKAKKLLQVMHTHGHK--PNTVSYTALLNGMCRTG 503
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 87/212 (41%), Gaps = 16/212 (7%)
Query: 51 VLKSIPRFFFQSPRSIGRQTGFRHRTPLKQRILK----------KEADNIANNVLVLGPA 100
VLKSIP+ ++ R + RH PL + + + K + N + L P+
Sbjct: 118 VLKSIPQSREEAGRFDVEEDESRH--PLVREVGRLIGLRSSWNPKHEGQMRNLLRSLKPS 175
Query: 101 AYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSR 160
+ A +F++W +R + + H+ + M V ++ +G L M R
Sbjct: 176 QVCAVLRSQDDERVALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKLCQGSRRVLVLMKR 235
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
RG T + ++ G + +AL M++ P++ N I+ R
Sbjct: 236 RGI--YRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRL 293
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
KA LE+M++ G P+V TY +I YC
Sbjct: 294 EKALRFLERMQVVGI--VPNVVTYNCMIRGYC 323
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 3/124 (2%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N + C VF R N ++ FL+ M + G + T C+I+ + V EA+
Sbjct: 276 NLLICNTTIDVFVRANRLEKALRFLERM--QVVGIVPNVVTYNCMIRGYCDLHRVEEAIE 333
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M C PD +Y ++ LC+ + R L+++M PD TY LI
Sbjct: 334 LLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMA-KEHGLVPDQVTYNTLIHM 392
Query: 251 YCKY 254
K+
Sbjct: 393 LTKH 396
>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 489
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV---TCLIKVLGEEGLVNEALATFYRMKQF 198
F R ++ W+F +M +RG + + T +I LG G +++A F M +
Sbjct: 242 FFRAGQIQHAWNFFLQMKKRGAKDESCKPDIVSYTTIIHGLGVAGQLDKARKLFDEMSKE 301
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P V YN +I +C+ GN A + + M + P+V TYT+LI C G
Sbjct: 302 GCTPSVATYNALIQVICKKGNVEDAVTVFDDMVRKDYM--PNVVTYTVLIRGLCHVG 356
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 145 GNNVKGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
G V G D EMS+ G V +T LI+V+ ++G V +A+ F M +
Sbjct: 281 GLGVAGQLDKARKLFDEMSKEGCTPSV--ATYNALIQVICKKGNVEDAVTVFDDMVRKDY 338
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
P+V Y V+I LC VG ++A L+E+M+ G C P V TY +LI
Sbjct: 339 MPNVVTYTVLIRGLCHVGKIDRAMKLMERMKGEG--CEPVVQTYNVLI 384
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V + NV+ +M R+ V T TV LI+ L G ++ A+ RMK C
Sbjct: 316 VICKKGNVEDAVTVFDDMVRKDYMPNVVTYTV--LIRGLCHVGKIDRAMKLMERMKGEGC 373
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
P V YNV+I G KA L E+M G C P+ TY I+IS+
Sbjct: 374 EPVVQTYNVLIRYSFEEGEIEKALCLFERMS-KGEDCLPNQDTYNIIISA 422
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ LG+ ++A A+ R + R PDV YN + + CR + ++A LL QM G
Sbjct: 169 LLDALGKSRHASKA-ASLVRALERRFPPDVVTYNTLADGWCRAKDTSRALDLLRQMAESG 227
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P TY I++ + + G
Sbjct: 228 --VTPTKTTYNIILKGFFRAG 246
>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
Length = 684
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 10/148 (6%)
Query: 115 ATEFYHWVERFF------HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT 168
A + + VE F + NEVT + F RG V+ L++MS G+G
Sbjct: 262 AAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMS--GHGCAAN 319
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T+ +I + ++G V++A M + C PD +Y V+ LCR + A+ LL+
Sbjct: 320 TTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLK 379
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
+M CPP+ T+ I C+ G+
Sbjct: 380 EMVRKN--CPPNEVTFNTFICILCQKGL 405
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I+ L + G V EAL+ M C+P V Y V++ A+C+ F +A +L++M
Sbjct: 147 TYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEM 206
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P++ TY ++I+ C+ G
Sbjct: 207 RAKG--CTPNIVTYNVIINGMCREG 229
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 148 VKGLWD---------FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
++GL D L +M RG V T TV L++ + + +A+ M+
Sbjct: 152 IRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTV--LLEAVCKSTGFGQAMEVLDEMRAK 209
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C P++ YNV+IN +CR G + AR L ++ GF+ PD +YT ++ C
Sbjct: 210 GCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQ--PDTVSYTTVLKGLC 261
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
NEVT + + ++ +++MS G V T L+ +G V+ AL
Sbjct: 389 NEVTFNTFICILCQKGLIEQATMLIEQMSEHGCE--VNIVTYNALVNGFCVQGRVDSALE 446
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
FY M C+P+ Y ++ LC + A LL +M C P+V T+ +L+S
Sbjct: 447 LFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKD--CAPNVVTFNVLVSF 501
Query: 251 YCKYGM 256
+C+ G+
Sbjct: 502 FCQKGL 507
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 153 DFLKEMSR-----RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
D L E +R GE T LI+ L G ++A ++ DV+AY
Sbjct: 57 DDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAY 116
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N ++ CR G + AR L+ M + PD YTYT +I C G
Sbjct: 117 NTLVAGYCRYGQLDAARRLIASMPV-----APDAYTYTPIIRGLCDRG 159
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R + + LKEM R+ VT +T C +L ++GL+ +A +M + C
Sbjct: 365 LCRAERWEDAKELLKEMVRKNCPPNEVTFNTFIC---ILCQKGLIEQATMLIEQMSEHGC 421
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
++ YN ++N C G + A L M C P+ TYT L++ C
Sbjct: 422 EVNIVTYNALVNGFCVQGRVDSALELFYSMP-----CKPNTITYTTLLTGLC 468
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y Y +I LC G +A LL+ M G C P V TYT+L+ + CK
Sbjct: 143 PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG--CQPSVVTYTVLLEAVCK 192
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E CK G A + L EM +G + T V +I + EG V++A
Sbjct: 188 EAVCKSTGFGQA--------MEVLDEMRAKGCTPNIVTYNV--IINGMCREGRVDDAREF 237
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
R+ + +PD +Y V+ LC + L +M C P+ T+ +L+ +
Sbjct: 238 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN--CMPNEVTFDMLVRFF 295
Query: 252 CKYGM 256
C+ GM
Sbjct: 296 CRGGM 300
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T T L+ L ++ A M Q C P+V +NV+++ C+ G ++A L+E
Sbjct: 457 TITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVE 516
Query: 229 QMELPGFRCPPDVYTYTILISS 250
QM G C P++ TY L+
Sbjct: 517 QMMEHG--CTPNLITYNTLLDG 536
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L EM ++ V T V L+ ++GL++EA+ +M + C P++ YN +++
Sbjct: 478 ELLAEMLQKDCAPNVVTFNV--LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLD 535
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
+ N +A LL + G PD+ TY+ +I
Sbjct: 536 GITNDCNSEEALELLHGLVSNGV--SPDIVTYSSIIG 570
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT S++ I VL E V EA+ F+ ++ RP YN ++ ALC+ N + A
Sbjct: 561 DIVTYSSI---IGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 617
Query: 225 FLLEQMELPGFRCPPDVYTYTILISS 250
M G C P+ TY LI
Sbjct: 618 DFFAYMVSNG--CMPNELTYITLIEG 641
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R V +FL +S G + V+ +TV +K L + F M + C
Sbjct: 225 MCREGRVDDAREFLNRLSSYGFQPDTVSYTTV---LKGLCAAKRWEDVEELFAEMMEKNC 281
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ +++++ CR G +A +LEQM G C + I+I++ CK G
Sbjct: 282 MPNEVTFDMLVRFFCRGGMVERAIQVLEQMS--GHGCAANTTLCNIVINTICKQG 334
>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
Length = 684
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 10/148 (6%)
Query: 115 ATEFYHWVERFF------HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT 168
A + + VE F + NEVT + F RG V+ L++MS G+G
Sbjct: 262 AAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMS--GHGCAAN 319
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T+ +I + ++G V++A M + C PD +Y V+ LCR + A+ LL+
Sbjct: 320 TTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLK 379
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
+M CPP+ T+ I C+ G+
Sbjct: 380 EMVRKN--CPPNEVTFNTFICILCQKGL 405
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I+ L + G V EAL+ M C+P V Y V++ A+C+ F +A +L++M
Sbjct: 147 TYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEM 206
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P++ TY ++I+ C+ G
Sbjct: 207 RAKG--CTPNIVTYNVIINGMCREG 229
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 148 VKGLWD---------FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
++GL D L +M RG V T TV L++ + + +A+ M+
Sbjct: 152 IRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTV--LLEAVCKSTGFGQAMEVLDEMRAK 209
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C P++ YNV+IN +CR G + AR L ++ GF+ PD +YT ++ C
Sbjct: 210 GCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQ--PDTVSYTTVLKGLC 261
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
NEVT + + ++ +++MS G V T L+ +G V+ AL
Sbjct: 389 NEVTFNTFICILCQKGLIEQATMLIEQMSEHGCE--VNIVTYNALVNGFCVQGRVDSALE 446
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
FY M C+P+ Y ++ LC + A LL +M C P+V T+ +L+S
Sbjct: 447 LFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKD--CAPNVVTFNVLVSF 501
Query: 251 YCKYGM 256
+C+ G+
Sbjct: 502 FCQKGL 507
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 153 DFLKEMSR-----RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
D L E +R GE T LI+ L G ++A ++ DV+AY
Sbjct: 57 DDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAY 116
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N ++ CR G + AR L+ M + PD YTYT +I C G
Sbjct: 117 NTLVAGYCRYGQLDAARRLIASMPV-----APDAYTYTPIIRGLCDRG 159
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R + + LKEM R+ VT +T C +L ++GL+ +A +M + C
Sbjct: 365 LCRAERWEDAKELLKEMVRKNCPPNEVTFNTFIC---ILCQKGLIEQATMLIEQMSEHGC 421
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
++ YN ++N C G + A L M C P+ TYT L++ C
Sbjct: 422 EVNIVTYNALVNGFCVQGRVDSALELFYSMP-----CKPNTITYTTLLTGLC 468
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y Y +I LC G +A LL+ M G C P V TYT+L+ + CK
Sbjct: 143 PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG--CQPSVVTYTVLLEAVCK 192
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E CK G A + L EM +G + T V +I + EG V++A
Sbjct: 188 EAVCKSTGFGQA--------MEVLDEMRAKGCTPNIVTYNV--IINGMCREGRVDDAREF 237
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
R+ + +PD +Y V+ LC + L +M C P+ T+ +L+ +
Sbjct: 238 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN--CMPNEVTFDMLVRFF 295
Query: 252 CKYGM 256
C+ GM
Sbjct: 296 CRGGM 300
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T T L+ L ++ A M Q C P+V +NV+++ C+ G ++A L+E
Sbjct: 457 TITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVE 516
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
QM G C P++ TY L+ K
Sbjct: 517 QMMEHG--CTPNLITYNTLLDGITK 539
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L EM ++ V T V L+ ++GL++EA+ +M + C P++ YN +++
Sbjct: 478 ELLAEMLQKDCAPNVVTFNV--LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLD 535
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
+ + N +A LL + G PD+ TY+ +I
Sbjct: 536 GITKDCNSEEALELLHGLVSNGV--SPDIVTYSSIIG 570
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT S++ I VL E V EA+ F+ ++ RP YN ++ ALC+ N + A
Sbjct: 561 DIVTYSSI---IGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 617
Query: 225 FLLEQMELPGFRCPPDVYTYTILISS 250
M G C P+ TY LI
Sbjct: 618 DFFAYMVSNG--CMPNELTYITLIEG 641
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R V +FL +S G + V+ +TV +K L + F M + C
Sbjct: 225 MCREGRVDDAREFLNRLSSYGFQPDTVSYTTV---LKGLCAAKRWEDVEELFAEMMEKNC 281
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ +++++ CR G +A +LEQM G C + I+I++ CK G
Sbjct: 282 MPNEVTFDMLVRFFCRGGMVERAIQVLEQMS--GHGCAANTTLCNIVINTICKQG 334
>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 606
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+ M + + +P+V+ +NVVINALC+ G NKAR ++E M++ G+ P+V +Y LI Y
Sbjct: 211 YKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGY--SPNVVSYNTLIDGY 268
Query: 252 CKYG 255
CK G
Sbjct: 269 CKLG 272
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
S +G G TT LI + G +++ A M++ PDV YN +I LCR G
Sbjct: 391 SVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNG 450
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N A+ L +Q+ G PD+ T+ IL+ YC G
Sbjct: 451 NIEAAKKLFDQLTNKGL---PDLVTFHILMEGYCSRG 484
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI + G++ EAL F +K RP YN++I+A C++G + L E+M
Sbjct: 368 TYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEM 427
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G PDV TY LI+ C+ G
Sbjct: 428 EREGI--VPDVGTYNCLIAGLCRNG 450
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + +N+ G KEM + + T LI L G +NEA+ +M +
Sbjct: 306 FWKDDNLPGSLKVFKEMLDQD--VIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQ 363
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++ Y+ +IN C+ G +A + + ++ G R P Y +LI +YCK G
Sbjct: 364 PNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTR--PTTRMYNMLIDAYCKLG 415
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T LI ++ + +L F M P+V YN +IN LC G N+A + ++
Sbjct: 297 TTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDK 356
Query: 230 MELPGFRCPPDVYTYTILISSYCKYGM 256
M G + P++ TY LI+ +CK GM
Sbjct: 357 MVSAGVQ--PNLITYHSLINGFCKNGM 381
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 15/169 (8%)
Query: 88 DNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN 147
++I ++LVL AY N + LG ++ + + ++CK + + + N
Sbjct: 152 NSIIADMLVL---AYANNSRFELGFEAFKR-----SGYYGYKLSAMSCKPLMVALLKQNR 203
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
+ KEM RR V T V +I L + G +N+A MK + P+V +Y
Sbjct: 204 SADVEYLYKEMIRRKIQPNVFTFNV--VINALCKTGKMNKARDVMEDMKVYGYSPNVVSY 261
Query: 208 NVVINALCRVGN---FNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N +I+ C++G KA +L++M P++ T+ ILI + K
Sbjct: 262 NTLIDGYCKLGGNGKMYKADAVLKEM--VENEVSPNLTTFNILIDGFWK 308
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R N++ +++ +G +LVT L++ G +A M + +
Sbjct: 446 LCRNGNIEAAKKLFDQLTNKGLPDLVT---FHILMEGYCSRGESRKAAMLLKEMSKMGLK 502
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P YN+++ C+ GN A + QME R +V +Y +L+ Y + G
Sbjct: 503 PRHLTYNIMMKGYCKEGNLKAATNMRTQME-KERRLRMNVASYNVLLQGYSQKG 555
>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
Length = 715
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 10/148 (6%)
Query: 115 ATEFYHWVERFF------HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT 168
A + + VE F + NEVT + F RG V+ L++MS G+G
Sbjct: 293 AAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMS--GHGCAAN 350
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T+ +I + ++G V++A M + C PD +Y V+ LCR + A+ LL+
Sbjct: 351 TTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLK 410
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
+M CPP+ T+ I C+ G+
Sbjct: 411 EMVRKN--CPPNEVTFNTFICILCQKGL 436
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I+ L + G V EAL+ M C+P V Y V++ A+C+ F +A +L++M
Sbjct: 178 TYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEM 237
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P++ TY ++I+ C+ G
Sbjct: 238 RAKG--CTPNIVTYNVIINGMCREG 260
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 148 VKGLWD---------FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
++GL D L +M RG V T TV L++ + + +A+ M+
Sbjct: 183 IRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTV--LLEAVCKSTGFGQAMEVLDEMRAK 240
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C P++ YNV+IN +CR G + AR L ++ GF+ PD +YT ++ C
Sbjct: 241 GCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQ--PDTVSYTTVLKGLC 292
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
NEVT + + ++ +++MS G V T L+ +G V+ AL
Sbjct: 420 NEVTFNTFICILCQKGLIEQATMLIEQMSEHGCE--VNIVTYNALVNGFCVQGRVDSALE 477
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
FY M C+P+ Y ++ LC + A LL +M C P+V T+ +L+S
Sbjct: 478 LFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKD--CAPNVVTFNVLVSF 532
Query: 251 YCKYGM 256
+C+ G+
Sbjct: 533 FCQKGL 538
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
GE T LI+ L G ++A ++ DV+AYN ++ CR G + A
Sbjct: 104 GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAA 163
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R L+ M + PD YTYT +I C G
Sbjct: 164 RRLIASMPV-----APDAYTYTPIIRGLCDRG 190
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R + + LKEM R+ VT +T C +L ++GL+ +A +M + C
Sbjct: 396 LCRAERWEDAKELLKEMVRKNCPPNEVTFNTFIC---ILCQKGLIEQATMLIEQMSEHGC 452
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
++ YN ++N C G + A L M C P+ TYT L++ C
Sbjct: 453 EVNIVTYNALVNGFCVQGRVDSALELFYSMP-----CKPNTITYTTLLTGLC 499
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y Y +I LC G +A LL+ M G C P V TYT+L+ + CK
Sbjct: 174 PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG--CQPSVVTYTVLLEAVCK 223
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E CK G A + L EM +G + T V +I + EG V++A
Sbjct: 219 EAVCKSTGFGQA--------MEVLDEMRAKGCTPNIVTYNV--IINGMCREGRVDDAREF 268
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
R+ + +PD +Y V+ LC + L +M C P+ T+ +L+ +
Sbjct: 269 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN--CMPNEVTFDMLVRFF 326
Query: 252 CKYGM 256
C+ GM
Sbjct: 327 CRGGM 331
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T T L+ L ++ A M Q C P+V +NV+++ C+ G ++A L+E
Sbjct: 488 TITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVE 547
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
QM G C P++ TY L+ K
Sbjct: 548 QMMEHG--CTPNLITYNTLLDGITK 570
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L EM ++ V T V L+ ++GL++EA+ +M + C P++ YN +++
Sbjct: 509 ELLAEMLQKDCAPNVVTFNV--LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLD 566
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
+ + N +A LL + G PD+ TY+ +I
Sbjct: 567 GITKDCNSEEALELLHGLVSNGV--SPDIVTYSSIIG 601
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT S++ I VL E V EA+ F+ ++ RP YN ++ ALC+ N + A
Sbjct: 592 DIVTYSSI---IGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 648
Query: 225 FLLEQMELPGFRCPPDVYTYTILI 248
M G C P+ TY LI
Sbjct: 649 DFFAYMVSNG--CMPNELTYITLI 670
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R V +FL +S G + V+ +TV +K L + F M + C
Sbjct: 256 MCREGRVDDAREFLNRLSSYGFQPDTVSYTTV---LKGLCAAKRWEDVEELFAEMMEKNC 312
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ +++++ CR G +A +LEQM G C + I+I++ CK G
Sbjct: 313 MPNEVTFDMLVRFFCRGGMVERAIQVLEQMS--GHGCAANTTLCNIVINTICKQG 365
>gi|449433161|ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 917
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ R + +W ++ R+G T LI +G A + M +FRC
Sbjct: 262 LLIRAGDCGAVWKLFGDVVRKG--PCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRC 319
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDVY+YN+VINA C G + A LL M G C P + T+ +I ++CK G
Sbjct: 320 EPDVYSYNIVINANCLKGQSSYALHLLNLMIENG--CKPSIATFCTIIDAFCKEG 372
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
++EM++RG L TV +I L ++G + A+ TF M + PD+ YN +I+
Sbjct: 660 LVREMNKRG--LLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDG 717
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C+ + A L+ +M G+ PD+ TY I I YC
Sbjct: 718 YCKAFDVGGADDLMMKMSDSGWE--PDLTTYNIRIHGYC 754
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N + LW+ +K G G I L GL+ +A F M + P+ +
Sbjct: 585 NMAESLWNEMK-----GRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNF 639
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN +I C+VG N+A L+ +M G PD++T ++I CK G
Sbjct: 640 VYNSLIGGFCKVGKLNEALKLVREMNKRGLL--PDIFTVNMIICGLCKQG 687
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 62/156 (39%), Gaps = 9/156 (5%)
Query: 100 AAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMS 159
AAY N G+ + + + + F + TC + I R ++ W L +M
Sbjct: 506 AAYGNA-----GLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMI 560
Query: 160 RRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
+G VT T L+ G VN A + + MK PD A+ IN LC G
Sbjct: 561 DKGFP--VTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGL 618
Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A + M GF P+ + Y LI +CK G
Sbjct: 619 MTDAYDVFSDMLRKGF--VPNNFVYNSLIGGFCKVG 652
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 14/119 (11%)
Query: 142 FARGNNVKGL----WDFLKEMSRRG--NGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
F G + GL +D +M R+G V S + KV G +NEAL M
Sbjct: 609 FINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKV----GKLNEALKLVREM 664
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ-MELPGFRCPPDVYTYTILISSYCK 253
+ PD++ N++I LC+ G + + +E M++ PD+ TY LI YCK
Sbjct: 665 NKRGLLPDIFTVNMIICGLCKQG---RMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCK 720
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
S ++ L ++L G F + + P+ + +N++I CR G LL
Sbjct: 254 SAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEALLHV 313
Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQT 258
M FRC PDVY+Y I+I++ C G +
Sbjct: 314 M--GKFRCEPDVYSYNIVINANCLKGQSS 340
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT----CLIKVLGEEGLVNEALATFYRMKQ 197
+ + +V G D + +MS G +TT + C ++ +N A+ +
Sbjct: 718 YCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRK------INRAVMILEELIS 771
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P+ YN +INA+C V + A L ++ F P+ T +L+S +CK GM
Sbjct: 772 VGIVPNTVTYNTMINAVCNV-ILDHAMILTAKLLKMAF--VPNTVTVNVLLSQFCKQGM 827
>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 860
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 98 GPAAYRNPQKVTLGIN---------------KATEFYHWVERFFHFFHNEVTCKEMGIVF 142
GPAA Q + L I+ A F++W++R F H+ T M
Sbjct: 315 GPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNL 374
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
R + L EM R +G T T LI G +NEA+ F +M++ C+P
Sbjct: 375 GRAKQFGAINKLLDEMVR--DGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKP 432
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D Y +I+ + G + A + ++M+ G PD +TY+++I+ K G
Sbjct: 433 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLS--PDTFTYSVIINCLGKAG 483
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 150 GLWDFLKEMSRR--GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G D +M +R G T T + +I LG+ G + A F M C P++ Y
Sbjct: 448 GFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTY 507
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS--SYCKY 254
N++++ + N+ A L M+ GF PD TY+I++ +C Y
Sbjct: 508 NIMMDLHAKARNYQNALKLYRDMQNAGFE--PDKVTYSIVMEVLGHCGY 554
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT M + A+ N + ++M G + VT S V ++VLG G + EA
Sbjct: 503 NLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIV---MEVLGHCGYLEEAE 559
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
A F M+Q PD Y ++++ + GN KA + M G R P+V T L+S
Sbjct: 560 AVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLR--PNVPTCNSLLS 617
Query: 250 SYCK 253
++ +
Sbjct: 618 TFLR 621
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ + G+ G V +A + M RP+V N +++ RV +A LL+ M G
Sbjct: 580 LVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALG 639
Query: 235 FRCPPDVYTYTILIS 249
R P + TYT+L+S
Sbjct: 640 LR--PSLQTYTLLLS 652
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T+T LI L + + EAL + PDVY +N++INALC+VG+ +
Sbjct: 367 GCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLG 426
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L E+M+ G C PD TY ILI C G
Sbjct: 427 IRLFEEMKSSG--CTPDEVTYNILIDHLCSMG 456
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ + N ++ D +E++ +G V T + LI L + G + + F MK
Sbjct: 380 VALSSQNRLEEALDLARELTVKGLSPDVYTFNI--LINALCKVGDPHLGIRLFEEMKSSG 437
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C PD YN++I+ LC +G A LL +ME G CP TY +I + CK
Sbjct: 438 CTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNG--CPRSTVTYNTIIDALCK 489
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
VT + R + V+ L+EMS G +T T L++ EEG + AL
Sbjct: 198 VTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAP--DETTFTTLMQGFIEEGSIEAALRVK 255
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+M + C P NV+IN C++G A ++Q GF PD TY + C
Sbjct: 256 AKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFE--PDQVTYNTFVHGLC 313
Query: 253 KYG 255
+ G
Sbjct: 314 QNG 316
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 61/144 (42%), Gaps = 5/144 (3%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
I+ ATE + + N +T + + + N+K D L+ M+ NG + T
Sbjct: 528 IDDATELIEQMVKE-GLQPNNITYNSILTHYCKQGNIKKAADILETMT--ANGFEIDVVT 584
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
LI L + G AL M+ RP AYN VI +L R N A L +M
Sbjct: 585 YGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMT 644
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
G PPD TY I+ S C+ G
Sbjct: 645 EVGE--PPDALTYKIVFRSLCRGG 666
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L + G ++EA +M C PD +N +I AL +A L ++
Sbjct: 339 TYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLAREL 398
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G PDVYT+ ILI++ CK G
Sbjct: 399 TVKGL--SPDVYTFNILINALCKVG 421
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
D L EM NG +T T +I L ++ + EA F +M +N +I
Sbjct: 462 LDLLNEME--SNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLI 519
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ LC+ + A L+EQM G + P+ TY +++ YCK G
Sbjct: 520 DGLCKAKRIDDATELIEQMVKEGLQ--PNNITYNSILTHYCKQG 561
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEAL 189
+ CK+M I A + +M +G ++ S VT LI L + +++A
Sbjct: 485 DALCKKMRIEEAE--------EVFDQMDAQG----ISRSAVTFNTLIDGLCKAKRIDDAT 532
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
+M + +P+ YN ++ C+ GN KA +LE M GF DV TY LI+
Sbjct: 533 ELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEI--DVVTYGTLIN 590
Query: 250 SYCKYG 255
CK G
Sbjct: 591 GLCKAG 596
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
V G+ +K L EM+ RG ++VT +T LIK L V A+ M
Sbjct: 171 VLVEGSKLKLLESVYNEMTGRGIQPDVVTLNT---LIKALCRAHQVRTAVLMLEEMSSHG 227
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD + ++ G+ A + +M G C P T +LI+ YCK G
Sbjct: 228 VAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAG--CSPTGVTVNVLINGYCKMG 281
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ VL E + + + M +PDV N +I ALCR A +LE+M G
Sbjct: 168 LLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHG 227
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD T+T L+ + + G
Sbjct: 228 V--APDETTFTTLMQGFIEEG 246
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T TV LI + G V +AL + PD YN ++ LC+ G+ + A ++
Sbjct: 266 TGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVM 325
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+ M G PDV+TY +I+ K G
Sbjct: 326 DLMLQEGH--DPDVFTYNTVINCLSKNG 351
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L G + AL M+ C YN +I+ALC+ +A + +QM
Sbjct: 444 TYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQM 503
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ G T+ LI CK
Sbjct: 504 DAQGI--SRSAVTFNTLIDGLCK 524
>gi|413953459|gb|AFW86108.1| hypothetical protein ZEAMMB73_051838 [Zea mays]
Length = 388
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK LG+ G +++A+ F M + C PDVYAYN +++ L R G ++A + +M+ G
Sbjct: 87 MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMIDEALSTMRRMQEHG 146
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD+ +Y I+++ K G
Sbjct: 147 --CIPDINSYNIILNGLAKTG 165
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L G+++EAL+T RM++ C PD+ +YN+++N L + G ++A +L M+
Sbjct: 122 LMSGLARTGMIDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQS- 180
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
PDV +Y ++ + GM
Sbjct: 181 -TVSPDVVSYNTVLGALSHAGM 201
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L + G + A+ MKQ PDV +YN V+ AL G F +A L+++M GF
Sbjct: 161 LAKTGGPHRAMEMLSNMKQSTVSPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEY- 219
Query: 239 PDVYTYTILISSYCK 253
D+ TY+ ++ + K
Sbjct: 220 -DLITYSSILEAIGK 233
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
R K +G+N +F+ W + ++ H+ T + +W ++EM R
Sbjct: 286 REVMKTDVGVNVKMQFFRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNP 345
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+VT + ++ +++ LG +V++A+A FY++K +C+
Sbjct: 346 IC-VVTPTELSDVVRKLGNAKMVSKAIAIFYQIKTRKCQ 383
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+EM +G + LI LG+ + A F +K+ Y V+I
Sbjct: 33 LLEEMDEKGFPP--CPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKH 90
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L + G + A + ++M G C PDVY Y L+S + GM
Sbjct: 91 LGKAGRLDDAINMFDEMNKLG--CAPDVYAYNALMSGLARTGM 131
>gi|297842741|ref|XP_002889252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335093|gb|EFH65511.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 780
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 10/141 (7%)
Query: 118 FYHWVERFFHFFHNEVTCKEMGIV---FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
F+ W R E G+V + N W L+E+ + G V +
Sbjct: 79 FFIWASRRERLRSGE----SFGLVIDMLSEDNGCDLYWQTLEEL--KSGGVSVDSYCFCV 132
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI + GL +A+ +F RMK+F CRPDV+ YNV++ + R F F + E+
Sbjct: 133 LISAYAKMGLAEKAVESFGRMKEFDCRPDVFTYNVILRIMMREDVFFMLAFAVYN-EMLK 191
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P++YT+ IL+ K G
Sbjct: 192 CNCSPNLYTFGILMDGLYKKG 212
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI+ L + G + +AL M PD Y YN VI ALC G + R L Q+E+
Sbjct: 342 TILIQGLSKAGKIEDALKLLRSMPSKGITPDTYCYNAVIKALCGRGLLEEGRSL--QLEM 399
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
PD T+TILI S C+ G+
Sbjct: 400 SETESFPDACTHTILICSMCRNGL 423
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 37/122 (30%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + GLV +A F +++ C P V +N +I+ LC+ G +AR LL +M
Sbjct: 410 THTILICSMCRNGLVRKAEEIFLEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKM 469
Query: 231 EL------------PGFRC-------------------------PPDVYTYTILISSYCK 253
E+ G R PD+ +Y +LI+ +C+
Sbjct: 470 EVGRPASLFLRLAHSGNRSFDTMVQSGSILKAYKNLAHFADTGNSPDIVSYNVLINGFCR 529
Query: 254 YG 255
G
Sbjct: 530 EG 531
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFR 199
++ ++ L+ M +G +T T +IK L GL+ E + M +
Sbjct: 348 LSKAGKIEDALKLLRSMPSKG----ITPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETE 403
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD + ++I ++CR G KA + ++E G C P V T+ LI CK G
Sbjct: 404 SFPDACTHTILICSMCRNGLVRKAEEIFLEIEKSG--CSPSVATFNALIDGLCKSG 457
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
PD+ +YNV+IN CR G+ + A LL ++L G PD TY LI+ + G +
Sbjct: 515 PDIVSYNVLINGFCREGDIDGALKLLNVLQLKGL--SPDSVTYNTLINGLHRVGRE 568
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L + G +A FY MK PD A+N +++ C++G +A LL
Sbjct: 235 TYTILISGLCQRGSPEDARKLFYEMKASGNYPDSVAHNALLDGFCKLGRMVEAFELLRLF 294
Query: 231 ELPGF 235
E GF
Sbjct: 295 EKDGF 299
>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 917
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
++ CKE ++ A + L+ M +RG ++ T + LIK L E ++EA
Sbjct: 62 DILCKEGKVIEAN--------ELLEVMIQRGC--ILDIVTYSTLIKGLCMEHRISEATWL 111
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM----ELPGFRCPPDVYTYTIL 247
F M++ CRPD Y ++ LC+ GN N A L ++M G +C P + +Y+I+
Sbjct: 112 FMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSII 171
Query: 248 ISSYCK 253
I CK
Sbjct: 172 IDGLCK 177
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
++ CKE ++ A + L+ M +RG ++ T + LIK L E ++EA
Sbjct: 355 DILCKEGKVIEAN--------ELLEVMIQRGC--ILDIVTYSTLIKGLCMEHRISEATWL 404
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM----ELPGFRCPPDVYTYTIL 247
F M++ CRPD Y ++ LC+ GN N A L ++M G +C P + +Y+I+
Sbjct: 405 FMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSII 464
Query: 248 ISSYCK 253
I CK
Sbjct: 465 IDGLCK 470
Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
++ CKE ++ A + L+ M +RG + T T T L+K L ++EA
Sbjct: 717 DMLCKEGKVIEAN--------ELLEVMIQRGC--IPNTVTYTTLVKGLCMNDRISEATQL 766
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKA----RFLLEQMELPGFRCPPDVYTYTIL 247
F +M++ C PDV Y ++ LC+ GN A + +L G PDV +Y+I+
Sbjct: 767 FMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSII 826
Query: 248 ISSYCKYGMQ 257
I CK+G +
Sbjct: 827 IDGLCKHGRE 836
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 15/129 (11%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
++ CKE ++ A + L+ M RG ++ T + LIK L + ++EA
Sbjct: 243 DMFCKEGKVIEAN--------ELLEVMVHRGC--ILDIVTYSTLIKGLCMKHRISEATQL 292
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM----ELPGFRC-PPDVYTYTI 246
F MK+ CRPD AY ++ LC+ G N A L ++M G +C PDV T ++
Sbjct: 293 FMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSM 352
Query: 247 LISSYCKYG 255
LI CK G
Sbjct: 353 LIDILCKEG 361
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 7/148 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEM----SRRGNGELV 167
I+KAT+ + +++ N VTC + + N+K + K M S G
Sbjct: 579 ISKATQLFLKMQKL-GCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKP 637
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+ + +I L + G +EA F MK PDV +Y +I+ CR G + A++L
Sbjct: 638 NAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLF 697
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M G + PDV T+++LI CK G
Sbjct: 698 NEMVDIGVQ--PDVTTFSVLIDMLCKEG 723
Score = 50.1 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G ++ T T L+K L + +++A F +M++ C P+V ++ LC+ GN A
Sbjct: 558 GCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIA 617
Query: 224 ----RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
+ +L G C P+ +Y+I+I CK G +
Sbjct: 618 LELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGRE 655
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R K EM G VTT +V LI +L +EG V EA M Q C
Sbjct: 684 FCRSGKWKDAKYLFNEMVDIGVQPDVTTFSV--LIDMLCKEGKVIEANELLEVMIQRGCI 741
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ Y ++ LC ++A L +M+ G C PDV TY L+ C+ G
Sbjct: 742 PNTVTYTTLVKGLCMNDRISEATQLFMKMQKLG--CLPDVVTYGTLMKGLCQTG 793
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
VTTS++ LI +L +EG V EA M Q C D+ Y+ +I LC ++A +L
Sbjct: 54 VTTSSM--LIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWL 111
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
M+ G C PD TY L+ C+ G
Sbjct: 112 FMSMQKLG--CRPDAITYGTLMKGLCQTG 138
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
VTTS++ LI +L +EG V EA M Q C D+ Y+ +I LC ++A +L
Sbjct: 347 VTTSSM--LIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWL 404
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
M+ G C PD TY L+ C+ G
Sbjct: 405 FMSMQKLG--CRPDAITYGTLMKGLCQTG 431
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L + R G T + + +I L ++ +EA F MK PDV +Y +I+
Sbjct: 149 EMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIH 208
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C G + KA+ L +M G + PDV T +LI +CK G
Sbjct: 209 GFCHSGKWEKAKCLFNEMLDVGIQ--PDVTTSGVLIDMFCKEG 249
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L + R G T + + +I L ++ +EA F MK PDV +Y +I+
Sbjct: 442 EMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIH 501
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C G + KA+ L +M G + PDV T ++LI CK G
Sbjct: 502 GFCLSGKWEKAKCLFNEMLDVGIQ--PDVTTSSVLIDMLCKKG 542
Score = 46.2 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ + +I L + G +EA F MK P+V +Y +I+ CR G A+ L +M
Sbjct: 822 SYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEM 881
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + + TY+++I +CK G
Sbjct: 882 VDQGVQL--NAVTYSVMIHGFCKEG 904
Score = 46.2 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ KEM + G + + T LI G +A F M +PDV ++V+I+
Sbjct: 660 ELFKEM--KALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLID 717
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
LC+ G +A LLE M G C P+ TYT L+ C
Sbjct: 718 MLCKEGKVIEANELLEVMIQRG--CIPNTVTYTTLVKGLC 755
Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ KEM + G + + T LI G +A F M +PDV V+I+
Sbjct: 186 ELFKEM--KAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLID 243
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C+ G +A LLE M G C D+ TY+ LI C
Sbjct: 244 MFCKEGKVIEANELLEVMVHRG--CILDIVTYSTLIKGLC 281
Score = 41.2 bits (95), Expect = 0.48, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
Query: 150 GLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
G W+ EM G VTTS V LI + +EG V EA M C D+
Sbjct: 214 GKWEKAKCLFNEMLDVGIQPDVTTSGV--LIDMFCKEGKVIEANELLEVMVHRGCILDIV 271
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y+ +I LC ++A L M+ G C PD Y L+ C+ G
Sbjct: 272 TYSTLIKGLCMKHRISEATQLFMSMKKLG--CRPDAIAYGTLMKGLCQTG 319
Score = 40.0 bits (92), Expect = 0.85, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 175 LIKVLGEEGLVNEALATFYRM----KQF--RC-RPDVYAYNVVINALCRVGNFNKARFLL 227
L+K L + G +N AL M Q+ +C RPDV +++I+ LC+ G +A LL
Sbjct: 311 LMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELL 370
Query: 228 EQMELPGFRCPPDVYTYTILISSYC 252
E M G C D+ TY+ LI C
Sbjct: 371 EVMIQRG--CILDIVTYSTLIKGLC 393
Score = 40.0 bits (92), Expect = 1.0, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQ---------FRCRPDVYAYNVVINALCRVGNFN 221
T LI L VNE LA + + + RPDV +++I+ LC+ G
Sbjct: 12 TFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILCKEGKVI 71
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+A LLE M G C D+ TY+ LI C
Sbjct: 72 EANELLEVMIQRG--CILDIVTYSTLIKGLC 100
>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
Length = 669
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+VL + G V +AL+ M + C+P+V Y V++ A+CR F +A +L++M
Sbjct: 145 TYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEM 204
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P++ TY ++I+ C+ G
Sbjct: 205 RAKG--CTPNIVTYNVIINGMCREG 227
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V V L +M RRG V T TV L++ + +A+A M+ C
Sbjct: 152 VLCDRGRVADALSLLDDMLRRGCQPNVVTYTV--LLEAMCRNSGFEQAMAVLDEMRAKGC 209
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P++ YNV+IN +CR G + AR LL ++ GF+ PD +YT L+ C
Sbjct: 210 TPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQ--PDTVSYTTLLKGLC 259
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 115 ATEFYHWVERFF------HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT 168
A++ + VE F + NEVT + F RG V+ L++M+ G
Sbjct: 260 ASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHG----CA 315
Query: 169 TSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
T+T C +I + ++G V++A M + C PD +Y V+ LCR ++ A+ L
Sbjct: 316 TNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKEL 375
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L +M CPP+ T+ I C+ G+
Sbjct: 376 LNEMVRN--NCPPNEVTFNTFICILCQKGL 403
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVYAYNVVINA 213
L E S +GE T LI+ L G ++A A R + P DV+AYN ++
Sbjct: 62 LVERSGSCDGEAPDVYLCTKLIRNLCRRGRTSDA-ARVLRAAEGSGSPVDVFAYNTLVAG 120
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CR G+ + AR L+ M + PD YTYT LI C G
Sbjct: 121 YCRYGHLDAARRLIGSMPV-----APDAYTYTPLIRVLCDRG 157
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
NEVT + + ++ +++MS G V T L+ +G ++ AL
Sbjct: 387 NEVTFNTFICILCQKGLIEQAIMLIEQMSEHGC--TVGVVTYNALVNGFCVQGHIDSALE 444
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F M C+P+ Y ++ LC + A L+ +M L G CPP+V T+ +L+S
Sbjct: 445 LFRSMP---CKPNTITYTTLLTGLCNAERLDGAAELVAEM-LRG-DCPPNVVTFNVLVSF 499
Query: 251 YCKYG 255
+C+ G
Sbjct: 500 FCQKG 504
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 148 VKGL-----WD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
+KGL WD L EM R N T I +L ++GL+ +A+ +M +
Sbjct: 360 LKGLCRAERWDDAKELLNEMVR--NNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEH 417
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C V YN ++N C G+ + A L M C P+ TYT L++ C
Sbjct: 418 GCTVGVVTYNALVNGFCVQGHIDSALELFRSMP-----CKPNTITYTTLLTGLC 466
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y Y +I LC G A LL+ M G C P+V TYT+L+ + C+
Sbjct: 141 PDAYTYTPLIRVLCDRGRVADALSLLDDMLRRG--CQPNVVTYTVLLEAMCR 190
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R + + L EM +G + T V +I + EG V++A R+ + +
Sbjct: 188 MCRNSGFEQAMAVLDEMRAKGCTPNIVTYNV--IINGMCREGRVDDARELLNRLPSYGFQ 245
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD +Y ++ LC ++ L +M C P+ T+ +LI +C+ GM
Sbjct: 246 PDTVSYTTLLKGLCASKRWDDVEELFAEMMEK--NCMPNEVTFDMLIRFFCRGGM 298
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + +I +L +E + EA+ F+ ++ RP YN ++ LC+ + A M
Sbjct: 562 TFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYM 621
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
G C P+ TY ILI G+
Sbjct: 622 VSNG--CMPNESTYIILIEGLAHEGL 645
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T + T L+K L ++ F M + C P+ ++++I CR G +A +LE
Sbjct: 248 TVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLE 307
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
QM G C + I+I+S CK G
Sbjct: 308 QMTEHG--CATNTTLCNIVINSICKQG 332
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T T L+ L ++ A M + C P+V +NV+++ C+ G +A L+E
Sbjct: 455 TITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVE 514
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
QM G C P++ TY L+ K
Sbjct: 515 QMMEHG--CTPNLITYNTLLDGITK 537
>gi|449456681|ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 527
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D L+EM NG T T +I +E + A M + C+PDV+++N +I
Sbjct: 347 DILREMGE--NGCKPDTVTYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIG 404
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC+ G +KA LLE M P CPPDV +Y I+ C+
Sbjct: 405 WLCKEGKLDKAMDLLEDM--PRRGCPPDVLSYRIIFDGLCE 443
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
LKE N +LV+ + + LI L + G E M + C+PD YN +IN
Sbjct: 313 LKEEMVTSNVKLVS-AVYSTLISALFKHGRKEEVSDILREMGENGCKPDTVTYNAIINGH 371
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ + A ++++M G C PDV+++ +I CK G
Sbjct: 372 CKENDLESAHRVMDEMVEKG--CKPDVFSFNTIIGWLCKEG 410
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 144 RGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
+ N+++ + EM +G ++ + +T+ I L +EG +++A+ M + C P
Sbjct: 373 KENDLESAHRVMDEMVEKGCKPDVFSFNTI---IGWLCKEGKLDKAMDLLEDMPRRGCPP 429
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
DV +Y ++ + LC + +A +L++M G+
Sbjct: 430 DVLSYRIIFDGLCEMMQLKEATSILDEMIFKGY 462
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 147 NVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDV 204
++ +W EM +RG +VT T LI L + EAL M K + +P+
Sbjct: 235 DLDAVWGVFDEMQKRGVKPNVVTFGT---LIYGLSLNSKLKEALRLKEDMVKVYMIKPNA 291
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +I C VG N A L E+M + V Y+ LIS+ K+G
Sbjct: 292 SIYTTLIKGFCGVGELNFAFKLKEEMVTSNVKLVSAV--YSTLISALFKHG 340
>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Glycine max]
Length = 852
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
AR +++ +EM +G ++VT ++ LI G+ G++ A++ F MK C
Sbjct: 261 LAREGDLEAARSLFEEMKAKGLRPDIVTYNS---LIDGYGKVGMLTGAVSVFEEMKDAGC 317
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PDV YN +IN C+ +A L M+ G + P+V TY+ LI ++CK GM
Sbjct: 318 EPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQ--PNVVTYSTLIDAFCKAGM 371
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 4/147 (2%)
Query: 108 VTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV 167
V LG+ + W F +C E+ ++ + F K+M G V
Sbjct: 192 VDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSV 251
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T + +I L EG + A + F MK RPD+ YN +I+ +VG A +
Sbjct: 252 FTYNM--VIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVF 309
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKY 254
E+M+ G C PDV TY LI+ +CK+
Sbjct: 310 EEMKDAG--CEPDVITYNSLINCFCKF 334
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
AL+ F M P V+ YN+VI L R G+ AR L E+M+ G R PD+ TY L
Sbjct: 235 ALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLR--PDIVTYNSL 292
Query: 248 ISSYCKYGMQT 258
I Y K GM T
Sbjct: 293 IDGYGKVGMLT 303
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + + +++L M +RG +VT ST LI + G++ EA F M +
Sbjct: 331 FCKFERIPQAFEYLHGMKQRGLQPNVVTYST---LIDAFCKAGMLLEANKFFVDMIRVGL 387
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P+ + Y +I+A C++G+ N+A L +M+ G ++ TYT L+ C+ G
Sbjct: 388 QPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNL--NIVTYTALLDGLCEDG 440
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L+EM G +T T LI L + GLV +A+ F M + +P++ Y +I+
Sbjct: 552 NLLQEMQDLGIK--ITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALID 609
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ +A+ L +M G PD YT LI K+G
Sbjct: 610 GLCKNDCLEEAKNLFNEMLDKGI--SPDKLVYTSLIDGNMKHG 650
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRC 200
R N ++ ++EM G L S + T LI + G EA+ M+
Sbjct: 506 LCRQNEIEDSMAVIREMMDCG---LTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGI 562
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ V Y V+I+ LC++G +A + M G + P++ YT LI CK
Sbjct: 563 KITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQ--PNIMIYTALIDGLCK 613
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
D L+EM+++ +L+ T I L + + +++A M + Y Y +I
Sbjct: 482 DILEEMNKKNLKPDLLLYGTK---IWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLI 538
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+A +VG +A LL++M+ G + V TY +LI CK G+
Sbjct: 539 DAYFKVGKTTEAVNLLQEMQDLGIKIT--VVTYGVLIDGLCKIGL 581
>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 636
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W+ + EM NG+ T CLI L + V++A+A ++K +PD+Y +N++I
Sbjct: 403 WELVDEM--HDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILI 460
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC+VG A+ + + + G+ + +TY I+++ CK G+
Sbjct: 461 YGLCKVGRLKNAQDVFQDLLSKGY--SVNAWTYNIMVNGLCKEGL 503
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
+M R+ +G+LV + V +I L + LV +A + +M + PDV ++ +I
Sbjct: 194 QMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGF 253
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C VG +A L +M L PD YT+ IL+ + CK G
Sbjct: 254 CIVGQLEEAFGLFREMVLKNIN--PDYYTFNILVDALCKEG 292
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + EA F M PD Y +N++++ALC+ GN A+ +L M G P+V
Sbjct: 257 GQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVM--PNVV 314
Query: 243 TYTILISSYC 252
TY+ L+ YC
Sbjct: 315 TYSSLMDGYC 324
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
+V+EAL+ F M+ PD YN +I+ LC+ G + A L+++M G P +++T
Sbjct: 363 MVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNG--QPANIFT 420
Query: 244 YTILISSYCK 253
Y LI + CK
Sbjct: 421 YNCLIDALCK 430
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 20/128 (15%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVT---CLIKVLGEEGLVNE 187
+ CKE N+KG + L M + G +VT S++ CL+ VN+
Sbjct: 286 DALCKE--------GNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQ------VNK 331
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A + Q P+ ++Y +IN C++ ++A L M+ G PD TY L
Sbjct: 332 AKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGI--APDKVTYNSL 389
Query: 248 ISSYCKYG 255
I CK G
Sbjct: 390 IDGLCKSG 397
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L +EG + A M + P+V Y+ +++ C V NKA+ +L +
Sbjct: 280 TFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTI 339
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
G P+ ++Y +I+ +CK M
Sbjct: 340 SQMG--AAPNAHSYCTMINGFCKIKM 363
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LIK L G V EAL + D ++Y +IN LC++G A +L
Sbjct: 138 TITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLR 197
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
+++ G +V Y +I S CK+ +
Sbjct: 198 KID--GKLVKINVVMYNTIIDSLCKHKL 223
Score = 37.0 bits (84), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 169 TSTVTCLIKVLGEEGLVNE-----ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
TS++ K+LG N A++ R++ PD++ +N++IN C + N A
Sbjct: 63 TSSIIEFNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFA 122
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ ++ G+ PD T+ LI C G
Sbjct: 123 FSMMAKILKMGYE--PDTITFNTLIKGLCLNG 152
>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
Length = 629
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 129 FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNE 187
F N VT + F + V+ + +EMS+RG G VT +T LI+ L + G +
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT---LIQGLFQAGDCDM 448
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A F +M PD+ Y+++++ LC+ G KA + E ++ + PD+YTY I+
Sbjct: 449 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS--KMEPDIYTYNIM 506
Query: 248 ISSYCKYG 255
I CK G
Sbjct: 507 IEGMCKAG 514
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ +M +RG +LVT V + L + G ++ AL+ +M++ + DV YN +I+
Sbjct: 207 LVDQMVQRGCQPDLVTYGAV---VNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIID 263
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ + + A L +ME G R PDV+TY LIS C YG
Sbjct: 264 GLCKYKHIDDAFALFNKMETKGIR--PDVFTYNSLISCLCNYG 304
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ L + G + +AL F +++ + PD+Y YN++I +C+ G L +
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQ 257
L G + P+V YT +IS +C+ G++
Sbjct: 527 SLKGVK--PNVIIYTTMISGFCRKGLK 551
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R ++ L D + EM + + T T LI L +EA+A +M Q C+PD
Sbjct: 165 RISDAVALVDQMVEMGYKPD-----TVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPD 219
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+ Y V+N LC+ G+ + A LL++ME + DV Y +I CKY
Sbjct: 220 LVTYGAVVNGLCKRGDIDLALSLLKKMEKG--KIEADVVIYNTIIDGLCKY 268
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A A F +M+ RPDV+ YN +I+ LC G ++ A LL M + P+V T+
Sbjct: 271 IDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNM--IERKINPNVVTF 328
Query: 245 TILISSYCKYG 255
+ LI ++ K G
Sbjct: 329 SALIDAFVKEG 339
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI +EG + EA + M + PD++ Y+ +IN C ++A+ + E M
Sbjct: 327 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 386
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C P+V TY LI +CK
Sbjct: 387 --ISKDCFPNVVTYNTLIKGFCK 407
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
RM+ R D+Y+YN++IN CR A +L +M G+ PD+ T + L++ YC
Sbjct: 105 RMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYE--PDIVTLSSLLNGYC 161
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+ F M Q R P + +N +++A+ ++ F+ L E+M+ R D+Y+Y
Sbjct: 61 LDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQ--NLRISYDLYSY 118
Query: 245 TILISSYCK 253
ILI+ +C+
Sbjct: 119 NILINCFCR 127
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+A +M + +PD +N +I+ L ++A L++QM G C PD+ TY
Sbjct: 166 ISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRG--CQPDLVTY 223
Query: 245 TILISSYCKYG 255
+++ CK G
Sbjct: 224 GAVVNGLCKRG 234
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ V+ WD +S +G V T +I +GL EA A F MK+ PD
Sbjct: 512 KAGKVEDGWDLFCSLSLKGVKPNVIIYTT--MISGFCRKGLKEEADALFREMKEDGTLPD 569
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
YN +I A R G+ + L+++M GF D T +++I+
Sbjct: 570 SGCYNTLIRARLRDGDKAASAELIKEMRSCGF--VGDASTISMVIN 613
>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 886
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 98 GPAAYRNPQKVTLGIN---------------KATEFYHWVERFFHFFHNEVTCKEMGIVF 142
GPAA Q + L I+ A F++W++R F H+ T M
Sbjct: 315 GPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNL 374
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
R + L EM R +G T T LI G +NEA+ F +M++ C+P
Sbjct: 375 GRAKQFGAINKLLDEMVR--DGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKP 432
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D Y +I+ + G + A + ++M+ G PD +TY+++I+ K G
Sbjct: 433 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLS--PDTFTYSVIINCLGKAG 483
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 150 GLWDFLKEMSRR--GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G D +M +R G T T + +I LG+ G + A F M C P++ Y
Sbjct: 448 GFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTY 507
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS--SYCKY 254
N++++ + N+ A L M+ GF PD TY+I++ +C Y
Sbjct: 508 NIMMDLHAKARNYQNALKLYRDMQNAGFE--PDKVTYSIVMEVLGHCGY 554
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT M + A+ N + ++M G + VT S V ++VLG G + EA
Sbjct: 503 NLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIV---MEVLGHCGYLEEAE 559
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
A F M+Q PD Y ++++ + GN KA + M G R P+V T L+S
Sbjct: 560 AVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLR--PNVPTCNSLLS 617
Query: 250 SYCK 253
++ +
Sbjct: 618 TFLR 621
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ + G+ G V +A + M RP+V N +++ RV +A LL+ M G
Sbjct: 580 LVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALG 639
Query: 235 FRCPPDVYTYTILIS 249
R P + TYT+L+S
Sbjct: 640 LR--PSLQTYTLLLS 652
>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
Length = 977
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 98 GPAAYRNPQKVTLGIN---------------KATEFYHWVERFFHFFHNEVTCKEMGIVF 142
GPAA Q + L I+ A F++W++R F H+ T M
Sbjct: 432 GPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNL 491
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
R + L EM R +G T T LI G +NEA+ F +M++ C+P
Sbjct: 492 GRAKQFGAINKLLDEMVR--DGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKP 549
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D Y +I+ + G + A + ++M+ G PD +TY+++I+ K G
Sbjct: 550 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGL--SPDTFTYSVIINCLGKAG 600
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 150 GLWDFLKEMSRR--GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G D +M +R G T T + +I LG+ G + A F M C P++ Y
Sbjct: 565 GFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTY 624
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS--SYCKY 254
N++++ + N+ A L M+ GF PD TY+I++ +C Y
Sbjct: 625 NIMMDLHAKARNYQNALKLYRDMQNAGFE--PDKVTYSIVMEVLGHCGY 671
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT M + A+ N + ++M G + VT S V ++VLG G + EA
Sbjct: 620 NLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIV---MEVLGHCGYLEEAE 676
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
A F M+Q PD Y ++++ + GN KA + M G R P+V T L+S
Sbjct: 677 AVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLR--PNVPTCNSLLS 734
Query: 250 SYCK 253
++ +
Sbjct: 735 TFLR 738
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ + G+ G V +A + M RP+V N +++ RV +A LL+ M G
Sbjct: 697 LVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALG 756
Query: 235 FRCPPDVYTYTILIS 249
R P + TYT+L+S
Sbjct: 757 LR--PSLQTYTLLLS 769
>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 587
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELV--TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+G G W+ ++E+ E + +T++ +I L +EGL A+ +M + C
Sbjct: 265 KGLRTAGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCT 324
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
++ YN V++ LC G+ + A +LL M+ G C P+++TY IL+ C
Sbjct: 325 ANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDG--CKPNIFTYNILVKGLC 373
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L++MS+ +VT + V + L E+G V+ AL M+ C+P+++ YN+++
Sbjct: 314 LLEKMSKHDCTANIVTYNAV---VSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVK 370
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC + A L+ +M C PD+ T+ +I C+ G+
Sbjct: 371 GLCNAERWEDAEDLMAKMS--QTDCLPDILTFNTIIGFLCQKGL 412
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L G V +AL M C PDV YN+++ A C+ + +A L++ M + G
Sbjct: 158 LMHALCVRGQVRDALVLLDNMLYRGCAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEG 217
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P TY +++ C+ G
Sbjct: 218 --CTPTNVTYNVIMDGMCREG 236
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 16/111 (14%)
Query: 154 FLKEMSRRGN-----------GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
++++ RRG G T T + L G ++EA M P
Sbjct: 94 LVRDLCRRGRPADAARVVEACGSAATAVTYSALADGYCRVGRLDEARRVVDGMPVL---P 150
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YAYN +++ALC G A LL+ M G C PDV TY IL+ + CK
Sbjct: 151 SAYAYNPLMHALCVRGQVRDALVLLDNMLYRG--CAPDVVTYNILLEAACK 199
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 7/126 (5%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT + A+ ++ + L EM +G N E+ L + L EE + EA+
Sbjct: 431 NSVTYSSVIEGLAKTGKMEQSLELLNEMGSKGFNPEI----NYHLLAECLNEEDKLVEAI 486
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
++++ P YN ++ LCR G ++A +L M G C PD TY+ILI
Sbjct: 487 QMVHKLQDTGISPQAVLYNTILLGLCRNGKTDQAIDILSNMVSDG--CMPDESTYSILIQ 544
Query: 250 SYCKYG 255
G
Sbjct: 545 GLAHEG 550
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G T T ++ + EG V+ A + + C P+ YN V+ L G +
Sbjct: 214 RVEGCTPTNVTYNVIMDGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRW 273
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L+ +M CPP T +++ISS C+ G+
Sbjct: 274 EDVEELIAEMF--SENCPPSEATLSVVISSLCQEGL 307
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+A+ M+ C P YNV+++ +CR G+ + AR LL LP + C P+ Y
Sbjct: 205 QAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYARELLNS--LPSYGCTPNTVNYNT 262
Query: 247 LI 248
++
Sbjct: 263 VL 264
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+K L +A +M Q C PD+ +N +I LC+ G +A + +QM P
Sbjct: 368 LVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQM--PE 425
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+ TY+ +I K G
Sbjct: 426 KGCCPNSVTYSSVIEGLAKTG 446
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P +VVI++LC+ G F +A LLE+M C ++ TY ++S C+ G
Sbjct: 288 CPPSEATLSVVISSLCQEGLFQRAIRLLEKMS--KHDCTANIVTYNAVVSGLCEQG 341
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 148 VKGL-----W----DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
VKGL W D + +MS+ L T +I L ++GL +A+ F +M +
Sbjct: 369 VKGLCNAERWEDAEDLMAKMSQTDC--LPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEK 426
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
C P+ Y+ VI L + G ++ LL +M GF
Sbjct: 427 GCCPNSVTYSSVIEGLAKTGKMEQSLELLNEMGSKGF 463
>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
Length = 1365
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
++++R V+ L+EM + GN + ST T LI G +A F + +
Sbjct: 864 MLYSRNQMVQEAQALLREMIKTGNAPNI--STYTTLISAYGRLQAYEDAELVFKSIAETG 921
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+PD AYNV+IN + G K ++EQM++ GF P + T +L+ SY K G
Sbjct: 922 CKPDATAYNVMINVYRKAGEHRKIEEIIEQMKVDGFE--PSLTTIHMLMDSYGKGG 975
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ G + T T LI LG+ G VNEA A F M + + RP + A++ +I A + F
Sbjct: 328 KEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMF 387
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
A M G R PD+ Y++++ + K GM
Sbjct: 388 TDAEHTYSCMLRAGVR--PDLLAYSVMLDVFFKAGM 421
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLG--EEGLVNEALATFYRMKQF 198
V+AR + + L M RG + T + + G +EGL + L Y
Sbjct: 134 VYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAAG-- 191
Query: 199 RCRPDVYAYNVVINALCRVGN-FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RPD YN +I+A C + N + A + E+M+ G C PD++TY +IS Y + G
Sbjct: 192 -LRPDTITYNTLISA-CSLNNRLSDAILIFEEMQRQG--CDPDIWTYNAMISVYGRAG 245
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+EM R+G + T +I V G G V A + F M++ PD YN V++A
Sbjct: 218 IFEEMQRQGCDPDIWT--YNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHA 275
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
R G + + M RC D TY +I Y K GM
Sbjct: 276 FARDGRIEEVERIRGMMR--DARCSSDEITYNTMIHMYGKAGMH 317
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI +++A+ F M++ C PD++ YN +I+ R G A +
Sbjct: 196 TITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFR 255
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
M+ GF PD TY ++ ++ + G
Sbjct: 256 IMQEQGF--TPDAVTYNSVLHAFARDG 280
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG-NFNKARFLLEQMELP 233
L+ V G N RM+ CRPD+ +N+VI A R G A LL+ +
Sbjct: 131 LMSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAA 190
Query: 234 GFRCPPDVYTYTILISS 250
G R PD TY LIS+
Sbjct: 191 GLR--PDTITYNTLISA 205
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSR--RGNGELVTTSTVTCLIKVLGEEGLV 185
F + VT + FAR ++ + + ++ M R R + + +T +T +I + G+ G+
Sbjct: 262 FTPDAVTYNSVLHAFARDGRIEEV-ERIRGMMRDARCSSDEITYNT---MIHMYGKAGMH 317
Query: 186 NEALATFYRMKQ-FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+A + +MK+ RC PD + V+I+ L + G N+A + E M R P + +
Sbjct: 318 RKAEELYVQMKEEGRC-PDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVR--PTLQAF 374
Query: 245 TILISSYCKYGMQT 258
+ +I +Y K M T
Sbjct: 375 SAMICAYAKADMFT 388
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 172 VTC---LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
TC +++ G G E F R+ + P+ + V+ +A R GN +AR +
Sbjct: 716 ATCANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYR 775
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
QM+ GF P + + L++ Y +
Sbjct: 776 QMKEAGF--SPSIQVFKALLALYSR 798
>gi|302810233|ref|XP_002986808.1| hypothetical protein SELMODRAFT_41291 [Selaginella moellendorffii]
gi|300145462|gb|EFJ12138.1| hypothetical protein SELMODRAFT_41291 [Selaginella moellendorffii]
Length = 587
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 92/232 (39%), Gaps = 34/232 (14%)
Query: 29 DAKLAASTTK-TQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLKQRILKKEA 87
D K A +T K + F+ VA +++ R + + T L + + A
Sbjct: 51 DVKGAVATLKRMSDDFSCTPVARTYEALIRVVMDAGQC---------DTALS--VYRAMA 99
Query: 88 DNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVE----RFFHFFHNEVTCKEMGIVFA 143
D + N++ LG R+ + ++ E Y + R H N + C
Sbjct: 100 DRVTYNLVALGCC--RSGR-----LDTCVEIYQEMRSRGFRVSHLAFNSLVCG-----LC 147
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ WD L + + VT STV I L + AL M+ R P+
Sbjct: 148 KAGRTDEAWDVLGKSRPSACADAVTLSTV---IHALCSSD-CDRALELMRAMQAQRVPPN 203
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V Y VI+ LC+ G + A LL+QM+ G C P+ TY LI S CK G
Sbjct: 204 VVTYTSVIDGLCKAGRRDAAMVLLQQMQAAG--CSPNTVTYNCLIHSLCKAG 253
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I L + G + A+ +M+ C P+ YN +I++LC+ G A LL M
Sbjct: 206 TYTSVIDGLCKAGRRDAAMVLLQQMQAAGCSPNTVTYNCLIHSLCKAGKLEDAFALLRSM 265
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
P C P + L+S CK+ +
Sbjct: 266 --PSKGCTPSINNKNTLVSGICKHAI 289
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK-QFRC 200
A+ + +WD ++EM +R + + + +IK G G V A+AT RM F C
Sbjct: 10 LAKAWQFEQMWDLMEEMDKRAHLH-IPAGIFSTVIKCYGRAGDVKGAVATLKRMSDDFSC 68
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P Y +I + G + A L +R D TY ++ C+ G
Sbjct: 69 TPVARTYEALIRVVMDAGQCDTA--------LSVYRAMADRVTYNLVALGCCRSG 115
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P V Y ++I+ALCR AR ++++M+ G PD TY L+ CK
Sbjct: 474 PSVATYTILIHALCRDNRLQAARQIIDKMKGQGV--LPDAITYNTLLHCLCK 523
>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 576
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQ 229
T T LI +E V +A+ F M+ C+PDV YNV+I C+ G ++A RFL
Sbjct: 218 TCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFL--- 274
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
+LP + C PDV ++ +++ S C G
Sbjct: 275 KKLPSYGCQPDVISHNMILRSLCSGG 300
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+ TCKE G+ G +K EM +G V T V LIK + G ++EA+
Sbjct: 224 DATCKESGV----GQAMK----LFNEMRNKGCKPDVVTYNV--LIKGFCKGGRLDEAIRF 273
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
++ + C+PDV ++N+++ +LC G + A LL M G C P V T+ ILI+
Sbjct: 274 LKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKG--CLPSVVTFNILINFL 331
Query: 252 CKYGM 256
C+ G+
Sbjct: 332 CQKGL 336
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
+T ++ L + G + +A+ R Q +C PDV V+I+A C+ +A L
Sbjct: 181 AATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFN 240
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M G C PDV TY +LI +CK G
Sbjct: 241 EMRNKG--CKPDVVTYNVLIKGFCKGG 265
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ L+EM +G +L+T ++V + L EG V EA+ F+ +K+F RP+ + YN +I
Sbjct: 447 ELLEEMCYKGLKPDLITCTSV---VGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSII 503
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC+ + A L M G C P TYT LI G+
Sbjct: 504 TGLCKSQQTSLAIDFLADMVAKG--CKPTEATYTTLIKGITYEGL 546
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F G + ++L+ M RG + T + L+ L ++G V++A+ ++ C
Sbjct: 366 FCNGKGIDRAIEYLEIMVSRGCYPDIVTYNI--LLTALCKDGKVDDAVVILSQLSSKGCS 423
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P + +YN VI+ L +VG A LLE+M G + PD+ T T ++ + G
Sbjct: 424 PSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLK--PDLITCTSVVGGLSREG 475
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 35/147 (23%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F +G + FLK++ G V + + +++ L G +A+ M + C
Sbjct: 261 FCKGGRLDEAIRFLKKLPSYGCQPDVISHNM--ILRSLCSGGRWMDAMKLLATMLRKGCL 318
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQME--------------LPGF------------ 235
P V +N++IN LC+ G KA +LE M + GF
Sbjct: 319 PSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEY 378
Query: 236 -------RCPPDVYTYTILISSYCKYG 255
C PD+ TY IL+++ CK G
Sbjct: 379 LEIMVSRGCYPDIVTYNILLTALCKDG 405
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV A +I C++G A ++ +E G DV +Y +LIS YCK G
Sbjct: 112 PDVIACTALIREFCKIGRTKNASQIMGILEESG--AVIDVTSYNVLISGYCKSG 163
>gi|224138172|ref|XP_002326536.1| predicted protein [Populus trichocarpa]
gi|222833858|gb|EEE72335.1| predicted protein [Populus trichocarpa]
Length = 697
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 10/136 (7%)
Query: 125 FFH------FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV 178
FFH + H+ ++ + F +G+NVK + + EM R NG + LI+
Sbjct: 352 FFHELSAKGYKHDLISYSTLIHGFLKGHNVKSANNLVHEM--RKNGLVPDYIIYISLIRE 409
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
+G + EAL FY M Q +PD+ N +++ C G F +A + QM+
Sbjct: 410 YCRKGCLKEALKNFYTMLQDGLQPDIITCNHIVDQYCSRGQFEEALIYINQMKDQNIL-- 467
Query: 239 PDVYTYTILISSYCKY 254
P+ YTY+++I+ CKY
Sbjct: 468 PNSYTYSVIINWLCKY 483
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+EM +G V T V I L G + +A ++ ++Y YN +I
Sbjct: 212 ILEEMEEKGENPTVVTYGV--YIHGLCRVGSIEDAWNKIQDLRSSNQPLNIYCYNALIQG 269
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ G ++A LLE+M+ G PD+Y+Y+IL++++C G
Sbjct: 270 FCQKGRPDEALKLLEEMKDEGI--SPDIYSYSILVNAFCTEG 309
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W ++M + G T+T L+ + + G +++AL F M + D +A+ +I
Sbjct: 526 WKLYRKMPKLGCKP--DNVTLTVLVDMFSKRGKMSKALNLFKEMAEEGLSRDEFAFTAII 583
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ CRVGN +A + ++M+ P+V TYT L+ +CK
Sbjct: 584 DGYCRVGNVKRAWSMYKKMKRNNV--TPNVKTYTCLVDGFCK 623
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R +++ W+ ++++ R + + + LI+ ++G +EAL MK
Sbjct: 235 LCRVGSIEDAWNKIQDL--RSSNQPLNIYCYNALIQGFCQKGRPDEALKLLEEMKDEGIS 292
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
PD+Y+Y++++NA C G+ L+++ME + PP V ++L+
Sbjct: 293 PDIYSYSILVNAFCTEGDIESGMNLIQEMEHCNKK-PPLVCCTSVLM 338
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 144 RGNNVKGLWDFLKEMSRRG--NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
RG K L + KEM+ G E T+ + +V G V A + + +MK+
Sbjct: 554 RGKMSKAL-NLFKEMAEEGLSRDEFAFTAIIDGYCRV----GNVKRAWSMYKKMKRNNVT 608
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
P+V Y +++ C++ + A L++ M+ PDV TYT LI+ Y
Sbjct: 609 PNVKTYTCLVDGFCKLKRLDMATMLIDDMKRNSV--TPDVKTYTALIAGY 656
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+ + ++ LIKV ++ +A F + K+ ++ + N ++ L R L
Sbjct: 114 SATVLSLLIKVFASNKMLADAKDVFMQAKKIGVELNISSCNFLLKCLAEGDKLEAVRSLF 173
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
+ ++ G P+VYTYTI+I+ YCK
Sbjct: 174 DDLKNSG--PSPNVYTYTIMINFYCK 197
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R NVK W K+M R N T TCL+ + ++ A MK+
Sbjct: 586 YCRVGNVKRAWSMYKKMKR--NNVTPNVKTYTCLVDGFCKLKRLDMATMLIDDMKRNSVT 643
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
PDV Y +I R+ N ++A + ++M+ G PD Y L
Sbjct: 644 PDVKTYTALIAGYQRIENIDRAYEVFDEMKKKG--TLPDHIAYLTL 687
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T ++ L +GLVN+ L F+ + + D+ +Y+ +I+ + N A L+ +M
Sbjct: 334 TSVLMGLRTKGLVNDCLNFFHELSAKGYKHDLISYSTLIHGFLKGHNVKSANNLVHEMRK 393
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G PD Y LI YC+ G
Sbjct: 394 NGL--VPDYIIYISLIREYCRKG 414
>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62930, chloroplastic; Flags: Precursor
gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 129 FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNE 187
F N VT + F + V+ + +EMS+RG G VT +T LI+ L + G +
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT---LIQGLFQAGDCDM 448
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A F +M PD+ Y+++++ LC+ G KA + E ++ + PD+YTY I+
Sbjct: 449 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS--KMEPDIYTYNIM 506
Query: 248 ISSYCKYG 255
I CK G
Sbjct: 507 IEGMCKAG 514
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ L + G + +AL F +++ + PD+Y YN++I +C+ G L +
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQ 257
L G + P+V YT +IS +C+ G++
Sbjct: 527 SLKGVK--PNVIIYTTMISGFCRKGLK 551
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI L +EA+A RM C+PD++ Y V+N LC+ G+ + A LL+
Sbjct: 185 TVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLK 244
Query: 229 QMELPGFRCPPDVYTYTILISSYCKY 254
+ME + DV YT +I + C Y
Sbjct: 245 KMEKG--KIEADVVIYTTIIDALCNY 268
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ M RG +L T TV + L + G ++ AL+ +M++ + DV Y +I+
Sbjct: 207 LIDRMVARGCQPDLFTYGTV---VNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIID 263
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
ALC N N A L +M+ G R P+V TY LI C YG
Sbjct: 264 ALCNYKNVNDALNLFTEMDNKGIR--PNVVTYNSLIRCLCNYG 304
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI +EG + EA + M + PD++ Y+ +IN C ++A+ + E M
Sbjct: 327 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 386
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C P+V TY LI +CK
Sbjct: 387 --ISKDCFPNVVTYNTLIKGFCK 407
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L VN+AL F M RP+V YN +I LC G ++ A LL M
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-- 316
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+ P+V T++ LI ++ K G
Sbjct: 317 IERKINPNVVTFSALIDAFVKEG 339
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
RM+ R D+Y+YN++IN CR A +L +M G+ PD+ T + L++ YC
Sbjct: 105 RMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYE--PDIVTLSSLLNGYC 161
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+ F M Q R P + +N +++A+ ++ F+ L E+M+ R D+Y+Y
Sbjct: 61 LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQ--NLRISYDLYSY 118
Query: 245 TILISSYCK 253
ILI+ +C+
Sbjct: 119 NILINCFCR 127
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+A +M +P+ +N +I+ L ++A L+++M G C PD++TY
Sbjct: 166 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARG--CQPDLFTY 223
Query: 245 TILISSYCKYG 255
+++ CK G
Sbjct: 224 GTVVNGLCKRG 234
>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
Length = 569
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L E++RRG ++VT STV I L + G + +A+ F M C P YN +I
Sbjct: 242 LLGEVTRRGFTPDIVTYSTV---IDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIG 295
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CR G+ ++A LL +M C PDV TYT L+S++CK G
Sbjct: 296 GYCRAGDMDEAIRLLGKM--VDDNCAPDVITYTTLMSAFCKMG 336
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 25/175 (14%)
Query: 94 VLVLGPAAYRN--PQKVTL-----GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGN 146
L+LG R P VT G+ KA V+ F E++C I + N
Sbjct: 240 ALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIF-----EEMSCAPTAITY---N 291
Query: 147 NVKGLWDFLKEMSR--RGNGELVTTS------TVTCLIKVLGEEGLVNEALATFYRMKQF 198
++ G + +M R G++V + T T L+ + G +++A F +M
Sbjct: 292 SLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVAN 351
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ PDV + +++ LC G A LLE++ G CPP +YTY ++ YCK
Sbjct: 352 KLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRG--CPPTIYTYNCVVDGYCK 404
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++ D +EMS T T LI G ++EA+ +M C
Sbjct: 265 LCKAGRLRDAVDIFEEMSCA-----PTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCA 319
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV Y +++A C++G + A L +QM + PDV T+T L+ C G
Sbjct: 320 PDVITYTTLMSAFCKMGRLDDAYELFQQM--VANKLSPDVVTFTSLVDGLCGEG 371
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ L EG + +AL + + C P +Y YN V++ C+ KA L+
Sbjct: 359 TFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADF 418
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF P+ TY IL++ C+ G
Sbjct: 419 RSRGF--VPNTVTYNILVAGCCRAG 441
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC-RPD 203
G+ V + ++EM RG T + L+ L + ++EA+A R PD
Sbjct: 197 GDRVDDARELVEEMLHRGMA--ANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPD 254
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ Y+ VI+ LC+ G A + E+M C P TY LI YC+ G
Sbjct: 255 IVTYSTVIDGLCKAGRLRDAVDIFEEMS-----CAPTAITYNSLIGGYCRAG 301
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA--LATFYRMKQFRCRPDVYAYNV 209
+ L+E++RRG T T C++ + V +A L +R + F P+ YN+
Sbjct: 377 LELLEEITRRGCPP--TIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFV--PNTVTYNI 432
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ CR G ++A L+Q+ G CP V Y I++ + C+ G
Sbjct: 433 LVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDG 478
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + L++EA+ MK P +NVVI LCR G A + QM
Sbjct: 86 LIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH 145
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PPD TYT L+ K G
Sbjct: 146 ---PPDFLTYTKLVHGLSKAG 163
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ L + G + +A+ M R PD VV+ +LC + AR L+E+M
Sbjct: 151 TYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEM 210
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G + TY+ L+ CK
Sbjct: 211 LHRGM--AANAITYSALVDGLCK 231
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 2/129 (1%)
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187
F N VT + R +L +++ G + + ++ L +G ++
Sbjct: 423 FVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDD 482
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ + M Q P + V+ ALC+ +A LLE+M G P T +
Sbjct: 483 AVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGH--TPGPGTCDAV 540
Query: 248 ISSYCKYGM 256
+S+YC+ GM
Sbjct: 541 VSAYCRAGM 549
>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 860
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 98 GPAAYRNPQKVTLGIN---------------KATEFYHWVERFFHFFHNEVTCKEMGIVF 142
GPAA Q + L I+ A F++W++R F H+ T M
Sbjct: 315 GPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNL 374
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
R + L EM R +G T T LI G +NEA+ F +M++ C+P
Sbjct: 375 GRAKQFGAINKLLDEMVR--DGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKP 432
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D Y +I+ + G + A + ++M+ G PD +TY+++I+ K G
Sbjct: 433 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLS--PDTFTYSVIINCLGKAG 483
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 150 GLWDFLKEMSRR--GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G D +M +R G T T + +I LG+ G + A F M C P++ Y
Sbjct: 448 GFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTY 507
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS--SYCKY 254
N++++ + N+ A L M+ GF PD TY+I++ +C Y
Sbjct: 508 NIMMDLHAKARNYQSALKLYRDMQNAGFE--PDKVTYSIVMEVLGHCGY 554
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT M + A+ N + ++M G + VT S V ++VLG G + EA
Sbjct: 503 NLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEPDKVTYSIV---MEVLGHCGYLEEAE 559
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
A F M+Q PD Y ++++ + GN KA + M G P+V T L+S
Sbjct: 560 AVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLL--PNVPTCNSLLS 617
Query: 250 SYCK 253
++ +
Sbjct: 618 TFLR 621
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGE--LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
I ARG GL + E +R G +T S LI + G +ALA + M Q
Sbjct: 58 IELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQ 117
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RPD Y +NV++NA + + L E+M+ C P+V TY+ILI + CK G
Sbjct: 118 SGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQ--NCSPNVITYSILIDAVCKCG 173
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W+ E+ +G + T L+ L + G +++A MK+ C PDV YN +I
Sbjct: 319 WEIFGELEE--DGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLI 376
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ L + G +A LL +M+ G+ PDV TY LI CK G
Sbjct: 377 DGLRKSGRVEEAGQLLLEMQSLGY--EPDVVTYNTLIDESCKGG 418
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + V +W +EM + V T ++ LI + + G V +AL F MK C
Sbjct: 133 AFKKAKRVDSVWKLFEEMQNQNCSPNVITYSI--LIDAVCKCGGVEKALKVFLDMKSRGC 190
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
RP+++ Y +I+ L + G+ +KA FL E+M G VY I
Sbjct: 191 RPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLI 236
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ LG G +EA F + C DV YNV+I+ LC+ ++A + ++
Sbjct: 266 TFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGEL 325
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G PDVYT+ L+ CK G
Sbjct: 326 EEDGL--VPDVYTFNALMDGLCKSG 348
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + ++EA F +++ PDVY +N +++ LC+ G + A LL M+ G
Sbjct: 305 LIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAG 364
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PDV Y LI K G
Sbjct: 365 --CTPDVTVYNTLIDGLRKSG 383
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T L+ + V+ F M+ C P+V Y+++I+A+C+ G KA +
Sbjct: 124 TYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFL 183
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
M+ G C P+++TYT +I K G
Sbjct: 184 DMKSRG--CRPNIFTYTSMIDGLGKSG 208
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L +M R G VT LI L + G V EA M+ PDV YN +I+
Sbjct: 356 LLGDMKRAGCTPDVTVYNT--LIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDE 413
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ G A L E++ GF + TY +++ C G
Sbjct: 414 SCKGGRIEDALRLFEEISAKGF---ANTVTYNTILNGLCMAG 452
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+CLI L + G + A F ++ Q +PDV YN++I+ C+VG + A L E+ME
Sbjct: 486 SCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEE 545
Query: 233 PGFRCPPDVYTYTILISSYCK 253
G C PD+ Y L+ +C+
Sbjct: 546 NG--CTPDIIAYNTLLCGFCE 564
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T LIK L E ++EA F RM++ C P+ Y +I LC+ GN N A
Sbjct: 156 GYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIA 215
Query: 224 RFLLEQM----ELPGFRCPPDVYTYTILISSYCKYGMQ 257
L ++M G C P V TY+I+I CK G +
Sbjct: 216 LKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRE 253
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 150 GLWD----FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G WD EM +G ++VT S LI L +EG V EA M Q P++
Sbjct: 286 GKWDQSKHLFDEMVDQGVQPDMVTFSV---LIDTLCKEGKVTEAKKLLEVMIQRGIVPNL 342
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN +I+ C VG+ N AR L M G PD +YT LI+ YCK
Sbjct: 343 ITYNSLIDGFCMVGDLNSARELFLSMPSKGLE--PDEISYTTLINGYCK 389
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRM----KQF--RCRPDVYAYNVVINALCRVGNFNKAR 224
T LIK L + G VN AL M Q+ C+P V Y+++I+ LC+VG ++A+
Sbjct: 198 TYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAK 257
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L E+M+ G PDV +Y+ LI +C G
Sbjct: 258 ELFEEMKAQGMI--PDVISYSTLIHGFCCAG 286
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L + S+ G T + +I L + G +EA F MK PDV +Y+ +I+
Sbjct: 221 EMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIH 280
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
C G +++++ L ++M G + PD+ T+++LI + CK G T
Sbjct: 281 GFCCAGKWDQSKHLFDEMVDQGVQ--PDMVTFSVLIDTLCKEGKVT 324
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
EA+ F +K + + ++ Y+ +I+ LC+ G A L E++ G + PDV TY I
Sbjct: 465 EAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQ--PDVVTYNI 522
Query: 247 LISSYCKYG 255
+I +CK G
Sbjct: 523 MIHGFCKVG 531
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++ W+ +++S+ G V T + +I + G V+ A F +M++ C
Sbjct: 492 LCKAGKLETAWELFEKLSQEGLQPDVVTYNI--MIHGFCKVGQVDNANILFEKMEENGCT 549
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD+ AYN ++ C + LL +M P+ + TI++ CK
Sbjct: 550 PDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVS--PNAASCTIVVDMLCK 599
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 150 GLWDFLKEM--SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G D KE+ + G + + + LI G +++ F M +PD+ +
Sbjct: 251 GREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTF 310
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+V+I+ LC+ G +A+ LLE M G P++ TY LI +C G
Sbjct: 311 SVLIDTLCKEGKVTEAKKLLEVMIQRGIV--PNLITYNSLIDGFCMVG 356
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVT-CLIKVLGEEGLVNEALATFYRMKQFR 199
A+ N+ L+ EM G + +L T S + CL V V+EALA + +
Sbjct: 101 LAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNV----NRVSEALAAMAGILRRG 156
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V Y +I LC ++A L +M+ G C P+ TY LI C+ G
Sbjct: 157 YIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLG--CTPNAVTYGTLIKGLCQTG 210
>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 669
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEA 188
NEVT + F RG V+ L++MS+ G T +T C +I + ++G V++A
Sbjct: 280 NEVTFDMLVRFFCRGGMVERAIQVLQQMSQHG----CTPNTTLCNIVINAICKQGRVDDA 335
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
M + C PD +Y V+ LCR G + A+ LL +M CPP+ T+ I
Sbjct: 336 YDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKN--CPPNEVTFNTFI 393
Query: 249 SSYCKYGM 256
C+ G+
Sbjct: 394 CILCQKGL 401
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I+ L + G V +ALA M Q C+P V Y V++ A+C+ F +A +L++M
Sbjct: 143 TYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEM 202
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P++ TY ++I+ C+ G
Sbjct: 203 RAKG--CTPNIVTYNVIINGMCREG 225
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 148 VKGLWD---------FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
++GL D L +M +RG V T TV L++ + + EA+ M+
Sbjct: 148 IRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTV--LLEAVCKSSGFGEAMNVLDEMRAK 205
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C P++ YNV+IN +CR G + A+ +L ++ GF+ PD+ +YT ++ C
Sbjct: 206 GCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQ--PDIVSYTTVLKGLC 257
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 153 DFLKEMSR-----RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVYA 206
D L E +R GE T LI+ L G ++A A R + P DV+A
Sbjct: 53 DDLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDA-ARVLRTAEASGAPVDVFA 111
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN ++ CR G + AR L+ M + PPD YTYT +I C G
Sbjct: 112 YNTLVAGYCRYGRLDAARRLIASMPV-----PPDAYTYTPIIRGLCDRG 155
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E CK G F NV L EM +G + T V +I + EG V++A
Sbjct: 184 EAVCKSSG--FGEAMNV------LDEMRAKGCTPNIVTYNV--IINGMCREGRVDDAKEI 233
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
R+ + +PD+ +Y V+ LC ++ + L +M +C P+ T+ +L+ +
Sbjct: 234 LNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEM--VDKKCVPNEVTFDMLVRFF 291
Query: 252 CKYGM 256
C+ GM
Sbjct: 292 CRGGM 296
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y Y +I LC G A LL+ M G C P V TYT+L+ + CK
Sbjct: 139 PDAYTYTPIIRGLCDRGRVGDALALLDDMLQRG--CQPSVVTYTVLLEAVCK 188
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 144 RGNNVKGLWD----FLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
RG G W+ L EM R+ VT +T C +L ++GL+ +A+ M ++
Sbjct: 359 RGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFIC---ILCQKGLIEQAIKLIELMPEY 415
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C + YN +++ C G + A L LP C P+ TYT L++ C
Sbjct: 416 GCSVGIVTYNALVHGFCVQGRVDSALELFNN--LP---CEPNTITYTTLLTGLC 464
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T + ++ VL E EA+ + ++ RP V YN ++ ALC+ ++A
Sbjct: 553 GVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQA 612
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
M G C P+ TY ILI G+
Sbjct: 613 IDFFAYMVSNG--CMPNESTYIILIEGLAHEGL 643
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R V + L +S G ++V+ +TV +K L ++ F M +C
Sbjct: 221 MCREGRVDDAKEILNRLSSYGFQPDIVSYTTV---LKGLCAARRWDDVKVLFAEMVDKKC 277
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ +++++ CR G +A +L+QM G C P+ I+I++ CK G
Sbjct: 278 VPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHG--CTPNTTLCNIVINAICKQG 330
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT ST L++ GLV++A M C PDVY Y +++ C+VG +AR
Sbjct: 510 DVVTFST---LVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEAR 566
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
+L++M G C P+V TYT LI ++C+ G T
Sbjct: 567 RVLKRMAKRG--CQPNVVTYTALIDAFCRAGKPT 598
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G ++EA F +M++ C PDV + +++ LC+ +A+ +LE ME
Sbjct: 307 LIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETME--D 364
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+V TY+ LI CK G
Sbjct: 365 RNCTPNVITYSSLIDGLCKTG 385
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R V + ++M NG + T L+ L GL++EA M++ +
Sbjct: 206 FCRQTKVDTAYKLFRQMVE--NGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQ 263
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD ++Y+ ++ LC+ G + A + E + CPPDV Y+ LI+ CK G
Sbjct: 264 PDKFSYDTLMAGLCKTGKIDMALKVFE--DNSNGDCPPDVVAYSTLIAGLCKAG 315
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 152 WDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
++ L EM RG + + T L+ L + G ++ AL F C PDV AY+ +
Sbjct: 251 YELLDEMRERGLQPDKFSYDT---LMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTL 307
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
I LC+ G ++A L E+M C PDV T+T L+ CK
Sbjct: 308 IAGLCKAGRLDEACKLFEKMRENS--CEPDVVTFTALMDGLCK 348
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + + V + LKEM G +VT STV I + V+ A F +M + C
Sbjct: 171 FCKVHKVHRAYLLLKEMKESGLAPNVVTYSTV---IHGFCRQTKVDTAYKLFRQMVENGC 227
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++ YN +++ LCR G ++A LL++M G + PD ++Y L++ CK G
Sbjct: 228 MPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQ--PDKFSYDTLMAGLCKTG 280
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L + G V +A F RM P+V YN +I+ C + A L+E+M
Sbjct: 373 TYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEM 432
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C PD+ TY LI CK G
Sbjct: 433 TATG--CLPDIITYNTLIDGLCKTG 455
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 60/141 (42%), Gaps = 7/141 (4%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
+ A F+HW + F HN T + R + LK G V T V
Sbjct: 5 DAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAV 64
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+I+ L + G +++A M++ PD YN VI+ALC+ N KA ME
Sbjct: 65 --VIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSME- 121
Query: 233 PGFRCPPDVYTYTILISSYCK 253
C +V T+TI+I CK
Sbjct: 122 ----CEKNVITWTIMIDGLCK 138
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 54/147 (36%), Gaps = 35/147 (23%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F N V ++EM+ G L T LI L + G EA F MK C
Sbjct: 416 FCMTNGVDSALLLMEEMT--ATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCN 473
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQM------------------------------- 230
PDV Y+ +I C++ + AR L + M
Sbjct: 474 PDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERL 533
Query: 231 --ELPGFRCPPDVYTYTILISSYCKYG 255
E+ C PDVYTYT L+ +CK G
Sbjct: 534 LEEMVASDCSPDVYTYTSLVDGFCKVG 560
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ N D+ + M N V T T+ +I L + + EA F +MK+
Sbjct: 103 ALCKARNTAKALDYFRSMECEKN---VITWTI--MIDGLCKANRLPEATTYFAKMKKKGT 157
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+ + YNV+IN C+V ++A LL++M+ G P+V TY+ +I +C+
Sbjct: 158 VPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGL--APNVVTYSTVIHGFCR 208
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ + G + EA RM + C+P+V Y +I+A CR G A LLE+M
Sbjct: 548 TYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEM 607
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + P+V TY LI +C G
Sbjct: 608 VGNGVQ--PNVITYRSLIGGFCGTG 630
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + F R + L+EM GNG T LI G + EA
Sbjct: 580 NVVTYTALIDAFCRAGKPTVAYRLLEEMV--GNGVQPNVITYRSLIGGFCGTGDLEEARK 637
Query: 191 TFYRMKQFR-CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
R+++ C+ D++AY V+++ LCR G + A LLE ++ G PP Y LI
Sbjct: 638 ILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGT--PPRHDIYVALIR 695
Query: 250 SYCK 253
C+
Sbjct: 696 GLCQ 699
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ L + + EA M+ C P+V Y+ +I+ LC+ G A+ + ++M
Sbjct: 338 TFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRM 397
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
+ G P+V TY LI +C
Sbjct: 398 IVRGIE--PNVVTYNSLIHGFC 417
>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
Length = 695
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 84/208 (40%), Gaps = 26/208 (12%)
Query: 59 FFQSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEF 118
F S R + R G HR L ++ D + L LGP P V ++ +
Sbjct: 92 FAHSRRLLSRLLGAGHRPHLAASLV----DLLHRAALALGPRRSALPSVVDTLLSLLADH 147
Query: 119 YHWVE--------RFFHFFHNEVTCKEMGIVFAR---GNNVKGLWDFLKEMSRRGNGELV 167
+ R N TC + + AR G V+ L+D L +
Sbjct: 148 GLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFDLLP---------VP 198
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T +I L +EG + EA A F RMK C PDV YN +I+ + G+ + L+
Sbjct: 199 NVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLV 258
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M G C DV TY LI+ + K+G
Sbjct: 259 SEMRKSG--CAADVVTYNALINCFSKFG 284
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F++ ++ + + EM R+G +VT ST + +EGLV EA+ F +M+
Sbjct: 280 FSKFGRMEKAYSYFGEMKRQGVVANVVTFST---FVDAFCKEGLVQEAMKLFAQMRVRGM 336
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ + Y +++ C+ G + A LL++M G P+V TYT+++ CK G
Sbjct: 337 MPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGL--VPNVVTYTVMVDGLCKEG 389
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + G ++EA++ F +M++ P+V AY +I+ C++G+ NKA L+ +M
Sbjct: 517 TYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEM 576
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G D YT LI Y K
Sbjct: 577 IDKGMSL--DKVVYTSLIDGYMK 597
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
NN + D L +M +G + S LI L ++ V+EA + ++M RP+
Sbjct: 424 NNSERALDLLNQMKNKGME--LDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTV 481
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +++AL + G ++A LL ++ GF+ P+V TY LI CK G
Sbjct: 482 IYTTIMDALFKAGKESEAVALLHKILDSGFQ--PNVVTYCALIDGLCKAG 529
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G T T ++ L + G +EA+A +++ +P+V Y +I+ LC+ G+ +
Sbjct: 473 GCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSIS 532
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A +M G P+V YT LI +CK G
Sbjct: 533 EAISHFNKMRELGL--DPNVQAYTALIDGFCKIG 564
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + +++ + + EM + G V T LI + G + +A + F MK+
Sbjct: 245 YGKCGDLEEVEQLVSEMRKSGCAADVVTYNA--LINCFSKFGRMEKAYSYFGEMKRQGVV 302
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+V ++ ++A C+ G +A L QM + G P+ +TYT L+ CK G
Sbjct: 303 ANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMM--PNEFTYTSLVDGTCKAG 354
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI G+ G + E M++ C DV YN +IN + G KA +M
Sbjct: 237 TYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEM 296
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
+ G +V T++ + ++CK G+
Sbjct: 297 KRQGV--VANVVTFSTFVDAFCKEGL 320
>gi|218185204|gb|EEC67631.1| hypothetical protein OsI_35025 [Oryza sativa Indica Group]
Length = 800
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
RG+ +GL L EM +G L T T LI LG++G + + + F M++ P+
Sbjct: 462 RGDMGRGLL-LLGEMEAKGF--LPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPN 518
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V YN VI+ALC+ + +A +L+QM G C PD+ T+ LI+ C G
Sbjct: 519 VQIYNSVIDALCKCWSATQAMVILKQMFASG--CDPDIITFNTLITGLCHEG 568
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 56/141 (39%), Gaps = 39/141 (27%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D L EM RG+ V T LI L G V+EAL +M + + PDV YNV+I+
Sbjct: 610 DLLMEMMGRGHTPDVVT--FGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLIS 667
Query: 213 ALC-----------------------------------RVGNFNKARFLLEQMELPGFRC 237
LC R N AR + E ME G R
Sbjct: 668 GLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVR- 726
Query: 238 PPDVYTYTILISSYCKYGMQT 258
PD+ + +I YC++GM +
Sbjct: 727 -PDIVSCNAMIKGYCQFGMMS 746
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 152 WDFLKEMSRRGNGELVTTST-VTC-LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
WD +++ GE TC L++ L EG V E L C P V YNV
Sbjct: 395 WDDARKLYDEMLGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYNV 454
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+I+ CR G+ + LL +ME GF P + TY LI+ K G
Sbjct: 455 LIDGYCRRGDMGRGLLLLGEMEAKGFL--PTLVTYGSLINCLGKKG 498
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVT--TSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ +++ + EM +RG V S + L K +A+ +M
Sbjct: 494 LGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWS----ATQAMVILKQMFASG 549
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C PD+ +N +I LC G+ KA L E P+ +YT LI +C G
Sbjct: 550 CDPDIITFNTLITGLCHEGHVRKAEHFLR--EAIRRELNPNQLSYTPLIHGFCMRG 603
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
E R G L + L+K+L E+ ++A + M D Y+ V++ LC
Sbjct: 367 ERLREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGEDSGADNYSTCVLVRGLCL 426
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
G + L+E G C P V Y +LI YC+ G
Sbjct: 427 EGRVEEGLKLIEARW--GAGCIPHVVFYNVLIDGYCRRG 463
>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Glycine max]
Length = 576
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
TT T T LI + G+ G AL F+ M C+P++ Y ++NA R G KA +
Sbjct: 259 TTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVF 318
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
EQM+ G PDVY Y L+ +Y + G
Sbjct: 319 EQMQEAGLE--PDVYAYNALMEAYSRAG 344
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ EGL +A F +M++ PDVYAYN ++ A R G A + M
Sbjct: 297 TYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLM 356
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQ 257
+ G C PD +Y IL+ +Y K G Q
Sbjct: 357 QHMG--CEPDRASYNILVDAYGKAGFQ 381
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LIK GL+ +A A F M+ + YN IN L + GN +KA +
Sbjct: 189 TEDTYALLIKAYCISGLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIF 248
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++M+ C P TYT+LI+ Y K G
Sbjct: 249 KRMKKDA--CKPTTETYTMLINLYGKAG 274
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
I L + G ++A F RMK+ C+P Y ++IN + G A L +M
Sbjct: 232 INGLMKGGNSDKAEEIFKRMKKDACKPTTETYTMLINLYGKAGKSFMALKLFHEM--MSH 289
Query: 236 RCPPDVYTYTILISSYCKYGM 256
C P++ TYT L++++ + G+
Sbjct: 290 DCKPNICTYTALVNAFAREGL 310
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ G+ G ++A A F MK+ P + ++ V+++A ++G+ NK +L QM G
Sbjct: 371 LVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSG 430
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ D Y +++ Y + G
Sbjct: 431 LKL--DTYVLNSMLNLYGRLG 449
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L++ G A F M+ C PD +YN++++A + G + A + + M+ G
Sbjct: 336 LMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVG 395
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P + ++ +L+S+Y K G
Sbjct: 396 I--TPTMKSHMVLLSAYSKMG 414
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
K+M R G + + V L+ + G VN+ +M + + D Y N ++N
Sbjct: 389 KDMKRVGITPTMKSHMV--LLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYG 446
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R+G F K +L ME + D+ TY ILI+ Y + G
Sbjct: 447 RLGQFGKMEEVLRVMEKGSY--VADISTYNILINRYGQAG 484
>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 485
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I V +EG +EA+ + M + PDV+ YN +IN LC G ++A+ +L+ M
Sbjct: 246 TFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLM 305
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C PDV TY LI+ +CK
Sbjct: 306 VTKG--CLPDVVTYNTLINGFCK 326
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V +AL F M++ D+ YN+VI+ +C++GN A L + G + PDV +Y
Sbjct: 397 VEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLK--PDVVSY 454
Query: 245 TILISSYCK 253
T +IS +C+
Sbjct: 455 TTMISGFCR 463
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
TV+ LI + V +A+ +M++ RPDV YN +I+ C++G N A L ++M
Sbjct: 141 TVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRM 200
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G R D TY L++ C G
Sbjct: 201 ERDGVR--ADAVTYNSLVAGLCCSG 223
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTV---TCLIKVLGEEGLVNEALATFYRMKQ 197
F +GN V D + +M G ++V +T+ +C I GLVN+A+ F RM++
Sbjct: 149 FCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKI------GLVNDAVELFDRMER 202
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R D YN ++ LC G ++ A L+ M + P+V T+T +I + K G
Sbjct: 203 DGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDI--VPNVITFTAVIDVFVKEG 258
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
AL+ +M +F PDV + +IN C+ A L+ +ME GFR PDV Y +
Sbjct: 123 ALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFR--PDVVIYNTI 180
Query: 248 ISSYCKYGM 256
I CK G+
Sbjct: 181 IDGSCKIGL 189
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
++ F+ M+ D+Y+YN+VIN LCR F A ++ +M G+ PDV T + L
Sbjct: 88 VISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYE--PDVVTVSSL 145
Query: 248 ISSYCK 253
I+ +C+
Sbjct: 146 INGFCQ 151
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + V +EM++RG G+ +T +T+ I+ + G + A F RM
Sbjct: 324 FCKSKRVDEGTKLFREMAQRGLVGDTITYNTI---IQGYFQAGRPDAAQEIFSRMDS--- 377
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RP++ Y++++ LC KA L E M+ D+ TY I+I CK G
Sbjct: 378 RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIEL--DITTYNIVIHGMCKIG 430
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
VF + +EM+RR V T LI L G V+EA M C
Sbjct: 253 VFVKEGKFSEAMKLYEEMTRRCVDPDVFT--YNSLINGLCMHGRVDEAKQMLDLMVTKGC 310
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV YN +IN C+ ++ L +M G D TY +I Y + G
Sbjct: 311 LPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGL--VGDTITYNTIIQGYFQAG 363
>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
Length = 500
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T T T LI + G++G AL F M +C+P++ Y ++NA R G KA +
Sbjct: 266 STETYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVF 325
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
EQM+ G PDVY+Y L+ +Y + G
Sbjct: 326 EQMQEAGLE--PDVYSYNALMEAYSRAG 351
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T LIK GL+ +A A F MK + YN IN L + GN NKA + +
Sbjct: 198 DTYALLIKAYCLSGLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLR 257
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M+ G C P TYT+LI+ Y K G
Sbjct: 258 MKRDG--CKPSTETYTMLINLYGKDG 281
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L++ G A F M+ C PD +YN++++A R G N A + E M+ G
Sbjct: 343 LMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAVFEDMKRVG 402
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P + ++ +L+S++ K G
Sbjct: 403 I--TPTMKSHMVLLSAFSKTG 421
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 33/114 (28%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ G G +N+A A F MK+ P + ++ V+++A + GN +K +L QM G
Sbjct: 378 LVDAYGRAGFLNDAEAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSG 437
Query: 235 FR---------------------------------CPPDVYTYTILISSYCKYG 255
+ C D+ TY ILI+ Y + G
Sbjct: 438 LKLDTFVLNSMLNLYGRLGQFGKMEEVLTVMENGSCEADISTYNILINRYGQAG 491
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
N+A F RMK+ C+P Y ++IN + G A + +M +C P++ TYT
Sbjct: 249 NKAEEIFLRMKRDGCKPSTETYTMLINLYGKDGKSFMALKVFNEM--LSHKCKPNICTYT 306
Query: 246 ILISSYCKYGM 256
L++++ + G+
Sbjct: 307 ALVNAFAREGL 317
>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 644
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T++ T LIK L EG + EAL F +M +PDV Y +IN LC+ G+ + A LL
Sbjct: 144 TASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLR 203
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQT 258
ME C PDV Y LI S CK QT
Sbjct: 204 SME--KGNCQPDVVVYGTLIHSLCKDRQQT 231
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G++ T L+ L + +++A+A ++ PD+ Y +VI+ +CR G A
Sbjct: 419 GQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDA 478
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
R L + G + P+V+TY I+ CK G+
Sbjct: 479 RDLFSNLSSKGLK--PNVWTYNIMTHGLCKRGL 509
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI L G + +A+A F M PD+ Y ++++ LC+ + +KA LL+
Sbjct: 389 TVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLK 448
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+E G PD+ YTI+I C+ G
Sbjct: 449 AIE--GSNLDPDIQIYTIVIDGMCRAG 473
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+ F M C P+V++YN +IN C++ +KA +L E+M + P+ TY
Sbjct: 335 MDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQ--KLIPNTVTY 392
Query: 245 TILISSYCKYG 255
LI C G
Sbjct: 393 NTLIHGLCHVG 403
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
++T ++ L +EG+V +A M Q PDV Y +I+ C ++A + + M
Sbjct: 286 SLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMM 345
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C P+V++Y LI+ YCK
Sbjct: 346 VHKG--CAPNVFSYNTLINGYCK 366
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ D +S +G V T + + L + GL++EA F M + C
Sbjct: 469 MCRAGELEDARDLFSNLSSKGLKPNVWTYNI--MTHGLCKRGLLDEATKLFMEMDENACS 526
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
D YN + R ++A LLE+M GF C DV T T+L+ G+
Sbjct: 527 ADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSC--DVSTTTLLVGMLSDDGLD 580
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+ F M + + P+ YN +I+ LC VG A L +M G PD+ TY
Sbjct: 370 MDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQ--IPDLVTY 427
Query: 245 TILISSYCK 253
IL+ CK
Sbjct: 428 RILLDYLCK 436
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G + A+ M++ C+PDV Y +I++LC+ +A L +M G
Sbjct: 185 LINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKG 244
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P++ T L+ + C G
Sbjct: 245 I--SPNIVTCNSLVYALCNLG 263
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M F +VY NV+IN+ C + N A +L ++ G C PD ++T LI C
Sbjct: 99 KMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLG--CQPDTASFTTLIKGLCL 156
Query: 254 YG 255
G
Sbjct: 157 EG 158
>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Brachypodium distachyon]
Length = 556
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R N + LKEM RG V T T+ L+ L G +++ A + MK+
Sbjct: 193 YTRQRNDDAVAGLLKEMENRGVEPTVGTYTI--LVDGLSRAGDISKVEAVYDEMKRKNVA 250
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
DVY Y+ VINA CR GN +A + + E G P+ TY LI+ +CK G
Sbjct: 251 GDVYFYSAVINAYCRGGNVRRASEVFD--ECVGHGVEPNERTYGALINGFCKIG 302
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI + +EG + EA F M+ RP V YNV+I+ + G+ +A ++ME
Sbjct: 397 TTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAERFKKEMEK 456
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G PD+YTY L+ +C G
Sbjct: 457 KGLV--PDIYTYAGLVHGHCVNG 477
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + ++ L +M RG G +I G+V +AL M++
Sbjct: 298 FCKIGQIEAAEMLLADMQLRGVGH--NQIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIE 355
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D+Y YN + LCRV A+ LL M G P+ +YT LIS + K G
Sbjct: 356 LDIYTYNTLACGLCRVNRMEDAKKLLHIMAEKGV--APNYVSYTTLISIHAKEG 407
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + +++ F KEM ++G LV T L+ G V+ AL F MK
Sbjct: 438 YIKNGSIREAERFKKEMEKKG---LVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGT 494
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+P+V AY +++ L + G +A L + M G PD Y++L+ S
Sbjct: 495 KPNVVAYTALVSGLAKEGRSEEAFQLYDDMLAAGLT--PDDTLYSVLVGS 542
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G + T +I + G + EA M++ PD+Y Y +++ C G +
Sbjct: 421 GKGSRPSVVTYNVMIDGYIKNGSIREAERFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVD 480
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A L E+M+ G + P+V YT L+S K G
Sbjct: 481 VALRLFEEMKHRGTK--PNVVAYTALVSGLAKEG 512
>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 572
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T+T T LI+ L EG + EAL F +M +PDV Y +IN LC+VGN + A L
Sbjct: 123 STATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFL 182
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
ME C P V Y+ +I S CK
Sbjct: 183 RSMEQR--NCRPTVVVYSTIIDSLCK 206
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
EA+ ++ PD++ Y++V++ +CR G AR L ++ G PDV TYTI
Sbjct: 422 EAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLH--PDVRTYTI 479
Query: 247 LISSYCKYGM 256
+I+ C+ G+
Sbjct: 480 MINGLCQQGL 489
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L G EA+ FY M + PD +N +++ALC+ G KA ++++ M
Sbjct: 231 TYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVM 290
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
+ PDV TY L+ +C
Sbjct: 291 IQSDLK--PDVVTYNSLMDGHC 310
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L +EG+V +A M Q +PDV YN +++ C K + + M
Sbjct: 266 TFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTM 325
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C P V +YT LI+ YCK
Sbjct: 326 VRKG--CVPSVISYTTLINGYCK 346
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
++++A+ F M Q PD YN +I+ LC VG A L +M + G PD+ T
Sbjct: 349 IMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQ--IPDLVT 406
Query: 244 YTILISSYCK 253
Y IL CK
Sbjct: 407 YRILFDYLCK 416
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G + A+ M+Q CRP V Y+ +I++LC+ +A L M G
Sbjct: 165 LINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKG 224
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+ +TY+ LI C G
Sbjct: 225 I--SPNNFTYSSLIHGLCILG 243
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+ + + F M + C P V +Y +IN C++ +KA L E+M G PD TY
Sbjct: 315 MGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGL--IPDTVTY 372
Query: 245 TILISSYCKYG 255
LI C G
Sbjct: 373 NTLIHGLCHVG 383
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++AL+ F RM + R P + ++ ++ ++ R+ +++ L +QM+ F P + YT
Sbjct: 35 IDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMD--SFGIPHNTYTL 92
Query: 245 TILISSYC 252
ILI+S+C
Sbjct: 93 NILINSFC 100
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ D ++S +G V T T+ +I L ++GL+ EA F M + C
Sbjct: 449 MCRAGELEAARDLFSKLSSKGLHPDVRTYTI--MINGLCQQGLLAEASKLFGEMDENGCS 506
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
P+ YN++ R +A L ++M GF DV T T+L+ G+
Sbjct: 507 PNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFSI--DVSTTTLLVEMLSDDGLD 560
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
FL+ M +R +V ST+ I L ++ + EAL+ F M P+ + Y+ +I+
Sbjct: 181 FLRSMEQRNCRPTVVVYSTI---IDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIH 237
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC +G++ +A L M + PD T+ L+ + CK GM
Sbjct: 238 GLCILGHWKEAIRLFYAM--IHRKIMPDQLTFNTLVDALCKEGM 279
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P + +I LC G +A L ++M GF+ PDV TY LI+ CK G
Sbjct: 121 QPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQ--PDVLTYGTLINGLCKVG 173
>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
Length = 671
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G T+T T LI+ + EG + EAL F +M RPDV Y +IN LC+VGN + A
Sbjct: 126 GHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAA 185
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LL M C P+V+ Y +I S CK
Sbjct: 186 IRLLGSMVQK--NCQPNVFAYNTIIDSLCK 213
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L + + EA+A ++ PD+ N+ I+ +CR G AR L + G
Sbjct: 471 LLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKG 530
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
+ PDV+TY+I+I+ C+ G+
Sbjct: 531 LQ--PDVWTYSIMINGLCRRGL 550
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G + A+ M Q C+P+V+AYN +I++LC+ +A L +M G
Sbjct: 172 LINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKG 231
Query: 235 FRCPPDVYTYTILISSYC 252
PD++TY LI + C
Sbjct: 232 I--SPDIFTYNSLIHALC 247
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ L +EG V EA +M Q P+V Y +++ C + ++A + + M G
Sbjct: 277 VVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKG 336
Query: 235 FRCPPDVYTYTILISSYCK 253
C P+V +Y LI+ YCK
Sbjct: 337 --CMPNVISYNTLINGYCK 353
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM---ELPGFRCPPDV 241
++EA+ F M C P+V +YN +IN C++ +KA +L +M EL PD
Sbjct: 376 MDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQEL-----IPDT 430
Query: 242 YTYTILISSYC 252
TY+ LI C
Sbjct: 431 VTYSTLIHGLC 441
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L ++ V EA F M PD++ YN +I+ALC + + LL +M
Sbjct: 207 IIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEM--VD 264
Query: 235 FRCPPDVYTYTILISSYCKYGMQT 258
+ PDV ++ ++ + CK G T
Sbjct: 265 SKIMPDVVSFNTVVDALCKEGKVT 288
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A + ++ + +PD + +I +C G +A L ++M GFR PDV TY L
Sbjct: 115 AFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFR--PDVVTYGTL 172
Query: 248 ISSYCKYG 255
I+ CK G
Sbjct: 173 INGLCKVG 180
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
M + PDV ++N V++ALC+ G +A ++++M G P+V TYT L+ +C
Sbjct: 261 EMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVE--PNVVTYTALMDGHC 317
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 31/141 (21%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+ CKE + A D + +M +RG V T T L E ++EA+
Sbjct: 279 DALCKEGKVTEAH--------DVVDKMIQRGVEPNVVTYTALMDGHCLLSE--MDEAVKV 328
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVG-------------------NFNKARFLLEQMEL 232
F M C P+V +YN +IN C++ N ++A + + M
Sbjct: 329 FDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVC 388
Query: 233 PGFRCPPDVYTYTILISSYCK 253
G C P+V +Y LI+ YCK
Sbjct: 389 KG--CMPNVISYNTLINGYCK 407
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++ A+++F RM + + P +N ++ ++ ++ + + L QM+ F PP++YT
Sbjct: 42 IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMD--SFGIPPNIYTL 99
Query: 245 TILISSYC 252
ILI+S+C
Sbjct: 100 HILINSFC 107
>gi|449487636|ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g19290-like [Cucumis
sativus]
Length = 885
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ R + +W ++ R+G T LI +G A + M +FRC
Sbjct: 231 LLIRAGDCGAVWKLFGDVVRKG--PCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRC 288
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDVY+YN+VINA C G + A LL M G C P + T+ +I ++CK G
Sbjct: 289 EPDVYSYNIVINANCLKGQSSYALHLLNLMIENG--CKPSIATFCTIIDAFCKEG 341
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
++EM++RG L TV +I L ++G + A+ TF M + PD+ YN +I+
Sbjct: 629 LVREMNKRG--LLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDG 686
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C+ + A L+ +M G+ PD+ TY I I YC
Sbjct: 687 YCKAFDVGGADDLMMKMSDSGWE--PDLTTYNIRIHGYC 723
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N + LW+ +K G G I L GL+ +A F M + P+ +
Sbjct: 554 NMAESLWNEMK-----GRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNF 608
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN +I C+VG N+A L+ +M G PD++T ++I CK G
Sbjct: 609 VYNSLIGGFCKVGKLNEALKLVREMNKRGLL--PDIFTVNMIICGLCKQG 656
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 62/156 (39%), Gaps = 9/156 (5%)
Query: 100 AAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMS 159
AAY N G+ + + + + F + TC + I R ++ W L +M
Sbjct: 475 AAYGNA-----GLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMI 529
Query: 160 RRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
+G VT T L+ G VN A + + MK PD A+ IN LC G
Sbjct: 530 DKGFP--VTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGL 587
Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A + M GF P+ + Y LI +CK G
Sbjct: 588 MTDAYDVFSDMLRKGF--VPNNFVYNSLIGGFCKVG 621
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 14/119 (11%)
Query: 142 FARGNNVKGL----WDFLKEMSRRG--NGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
F G + GL +D +M R+G V S + KV G +NEAL M
Sbjct: 578 FINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKV----GKLNEALKLVREM 633
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ-MELPGFRCPPDVYTYTILISSYCK 253
+ PD++ N++I LC+ G + + +E M++ PD+ TY LI YCK
Sbjct: 634 NKRGLLPDIFTVNMIICGLCKQG---RMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCK 689
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
P+ + +N++I CR G LL M FRC PDVY+Y I+I++ C G +
Sbjct: 255 PNNFTFNLLILEFCRKGWTRIGEALLHVM--GKFRCEPDVYSYNIVINANCLKGQSS 309
Score = 37.0 bits (84), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT----CLIKVLGEEGLVNEALATFYRMKQ 197
+ + +V G D + +MS G +TT + C ++ +N A+ +
Sbjct: 687 YCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRK------INRAVMILEELIS 740
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P+ YN +INA+C V + A L ++ F P+ T +L+S +CK GM
Sbjct: 741 VGIVPNTVTYNTMINAVCNV-ILDHAMILTAKLLKMAF--VPNTVTVNVLLSQFCKQGM 796
>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 598
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT +T+ ++ L + G + +A+ RM Q C PDV Y ++I A CR A
Sbjct: 203 DVVTYNTI---LRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAM 259
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL++M G C PDV TY +L++ CK G
Sbjct: 260 KLLDEMRDRG--CTPDVVTYNVLVNGICKEG 288
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E TC++ G+ A L EM RG V T V L+ + +EG ++EA+
Sbjct: 247 EATCRDSGVGHA--------MKLLDEMRDRGCTPDVVTYNV--LVNGICKEGRLDEAIKF 296
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
M C+P+V +N+++ ++C G + A LL M GF P V T+ ILI+
Sbjct: 297 LNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF--SPSVVTFNILINFL 354
Query: 252 CKYGM 256
C+ G+
Sbjct: 355 CRKGL 359
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ + V A+ M+ C PDV YNV++N +C+ G ++A L M
Sbjct: 241 TYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM 300
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
P C P+V T+ I++ S C G
Sbjct: 301 --PSSGCQPNVITHNIILRSMCSTG 323
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 150 GLW----DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
G W L +M R+G V T + LI L +GL+ A+ +M Q C+P+
Sbjct: 323 GRWMDAEKLLADMLRKGFSPSVVTFNI--LINFLCRKGLLGRAIDILEKMPQHGCQPNSL 380
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+YN +++ C+ ++A LE+M G C PD+ TY ++++ CK G
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRG--CYPDIVTYNTMLTALCKDG 428
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G+G + T +I + G +N AL+ RM PDV YN ++ +LC G
Sbjct: 165 GSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLK 221
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+A +L++M C PDV TYTILI + C+
Sbjct: 222 QAMEVLDRM--LQRDCYPDVITYTILIEATCR 251
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
++L+ M RG ++VT +T ++ L ++G V +A+ ++ C P + YN VI
Sbjct: 400 EYLERMVSRGCYPDIVTYNT---MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVI 456
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ L + G KA LL++M + PD TY+ L+ + G
Sbjct: 457 DGLAKAGKTGKAIKLLDEMRAKDLK--PDTITYSSLVGGLSREG 498
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ FL+ M GN + T LI+ G +A ++ PDV YNV+I
Sbjct: 122 FKFLENMVYHGNVPDIIPCTT--LIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMI 179
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ C+ G N A +L++M + PDV TY ++ S C G
Sbjct: 180 SGYCKAGEINNALSVLDRMSV-----SPDVVTYNTILRSLCDSG 218
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+E ++ A+ RM C PD+ YN ++ ALC+ G A +L Q+ G C P
Sbjct: 391 KEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG--CSPV 448
Query: 241 VYTYTILISSYCKYG 255
+ TY +I K G
Sbjct: 449 LITYNTVIDGLAKAG 463
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T + L+ L EG V+EA+ F+ ++ RP+ +N ++ LC+ ++A L
Sbjct: 484 TITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLV 543
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
M G C P+ +YTILI GM
Sbjct: 544 FMINRG--CKPNETSYTILIEGLAYEGM 569
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 8/143 (5%)
Query: 114 KATEFYHWVERFFH--FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE-LVTTS 170
K ++ER + + VT M + V+ + L ++S +G L+T +
Sbjct: 394 KMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYN 453
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
TV I L + G +A+ M+ +PD Y+ ++ L R G ++A +
Sbjct: 454 TV---IDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEF 510
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E G R P+ T+ ++ CK
Sbjct: 511 ERMGIR--PNAVTFNSIMLGLCK 531
>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
Japonica Group]
gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
Length = 648
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE ++ A G L EM RG T T LI EG +++AL F
Sbjct: 377 CKERRLLDAEG--------LLNEMRERGVPP--DLCTFTTLIHGYCIEGKLDKALQLFDT 426
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M R RPD+ YN +I+ +CR G+ +KA L + M P+ TY+ILI S+C+
Sbjct: 427 MLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMH--SREIFPNHVTYSILIDSHCEK 484
Query: 255 G 255
G
Sbjct: 485 G 485
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+FAR + +L+EM R G + T +I GL+++AL M C
Sbjct: 305 LFARRGKMDHAMAYLREM--RCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGC 362
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV YN ++N LC+ A LL +M G PPD+ T+T LI YC G
Sbjct: 363 LPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGV--PPDLCTFTTLIHGYCIEG 415
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W+ KEM G V + T+ LI G + EAL + M+ +PD+ +++ +I
Sbjct: 246 WEVFKEMDDFGVAPDVRSFTI--LIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLI 303
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
R G + A L +M G PD YT++I +C+ G+ +
Sbjct: 304 GLFARRGKMDHAMAYLREMRCFGL--VPDGVIYTMVIGGFCRAGLMS 348
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
+ EM +R V T V ++ G A+A M +P + YN V+ L
Sbjct: 179 ISEMEKRCVFPDVVTHNV--MVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGL 236
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CR G ++KA + ++M+ F PDV ++TILI +C+ G
Sbjct: 237 CRSGMWDKAWEVFKEMD--DFGVAPDVRSFTILIGGFCRVG 275
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T ++K L G+ ++A F M F PDV ++ ++I CRVG +A + ++M
Sbjct: 228 TYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEM 287
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + PD+ +++ LI + + G
Sbjct: 288 RHRGIK--PDLVSFSCLIGLFARRG 310
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFL-KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ R NV FL K M + + +L+T +T LI +E +++A M++ +
Sbjct: 516 YCRSGNVSKGQKFLQKMMVNKVSPDLITYNT---LIHGYIKEDKMHDAFKLLNMMEKEKV 572
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PDV YN++IN GN +A ++ E+M G PD YTY +I+ + G
Sbjct: 573 QPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIE--PDRYTYMSMINGHVTAG 625
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI E+G V +A M P++ YN +I CR GN +K + L++M
Sbjct: 473 TYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKM 532
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ + PD+ TY LI Y K
Sbjct: 533 MVN--KVSPDLITYNTLIHGYIK 553
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 4/129 (3%)
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186
F N VT + V+ + FL EM +G L T +IK G V+
Sbjct: 466 EIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGI--LPNIMTYNSIIKGYCRSGNVS 523
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+ +M + PD+ YN +I+ + + A LL ME + PDV TY +
Sbjct: 524 KGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKE--KVQPDVVTYNM 581
Query: 247 LISSYCKYG 255
LI+ + +G
Sbjct: 582 LINGFSVHG 590
>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 150 GLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
G W+ EM +G V T V LI VL +EG V EA M Q P++
Sbjct: 291 GKWEEAKRLFNEMVNQGVQPNVVTFNV--LIDVLCKEGKVIEAKDLLEVMIQRGIVPNLL 348
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN +I C VG+ N AR L M P C PDV YT+LI+ YCK
Sbjct: 349 TYNSLIEGFCLVGDLNSARELFVSM--PSKGCEPDVICYTVLINGYCK 394
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
CLI L + G + A F ++ Q +PDV YN++I+ CR G KA L ++ME
Sbjct: 492 CLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKN 551
Query: 234 GFRCPPDVYTYTILISSY 251
G C PD TY LI +
Sbjct: 552 G--CTPDKITYATLIRGF 567
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LIK L E +++A F RM++ C P+ Y ++ LCR GN + A L ++M
Sbjct: 168 TYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEM 227
Query: 231 ----ELPGFRCPPDVYTYTILISSYCK 253
L G P V +Y+I+I + CK
Sbjct: 228 LNDSSLYGINFKPVVISYSIIIDALCK 254
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L + G + EA+ F ++K + + D+ +N +I+ LC+ G A L E+ LP
Sbjct: 462 LCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEK--LPQEELQ 519
Query: 239 PDVYTYTILISSYCKYG 255
PDV TY I+I +C+ G
Sbjct: 520 PDVVTYNIMIHEFCRGG 536
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+V CKE ++ A+ D L+ M +RG + T LI+ G +N A
Sbjct: 320 DVLCKEGKVIEAK--------DLLEVMIQRG--IVPNLLTYNSLIEGFCLVGDLNSAREL 369
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F M C PDV Y V+IN C+ +A L M G R PDV TY L++
Sbjct: 370 FVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKR--PDVKTYGALLTGL 427
Query: 252 CKYG 255
+ G
Sbjct: 428 FQGG 431
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI + V EA+ + M Q RPDV Y ++ L + G A+ L M++
Sbjct: 386 TVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKV 445
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G P D+Y Y I ++ CK G
Sbjct: 446 YGI--PGDLYIYGIFLNGLCKNG 466
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P V +Y+++I+ALC+ ++AR L E+M++ G P V +YT LI +C G
Sbjct: 239 KPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMT--PTVISYTSLIHGFCCGG 291
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+ L+ L V E LA + + PD+ Y +I LC +KA L +M
Sbjct: 133 TLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRM 192
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G C P+ TY L+ C+ G
Sbjct: 193 QKLG--CTPNAITYGTLMKGLCRTG 215
>gi|302771776|ref|XP_002969306.1| hypothetical protein SELMODRAFT_61378 [Selaginella moellendorffii]
gi|300162782|gb|EFJ29394.1| hypothetical protein SELMODRAFT_61378 [Selaginella moellendorffii]
Length = 587
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 73/178 (41%), Gaps = 22/178 (12%)
Query: 82 ILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVE----RFFHFFHNEVTCKE 137
+ + AD + N++ LG R+ + ++ E Y + R H N + C
Sbjct: 94 VYRAMADRVTYNLVALGCC--RSGR-----LDTCVEIYQEMRSRGFRVSHLAFNSLVCG- 145
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+ WD L + + VT STV I L + AL M+
Sbjct: 146 ----LCKAGRTDEAWDVLGKSRPSACADAVTLSTV---IHALCSSD-CDRALELMRAMQA 197
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R P+V Y VI+ LC+ G + A LL+QM+ G C P+ TY LI S CK G
Sbjct: 198 QRVPPNVVTYTSVIDGLCKAGRRDAAMVLLQQMQAAG--CSPNTVTYNCLIHSLCKAG 253
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I L + G + A+ +M+ C P+ YN +I++LC+ G A LL M
Sbjct: 206 TYTSVIDGLCKAGRRDAAMVLLQQMQAAGCSPNTVTYNCLIHSLCKAGKLEDAFALLRGM 265
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
P C P + L+S CK+ +
Sbjct: 266 --PSKGCTPSINNKNTLVSGICKHAI 289
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK-QFRC 200
A+ + +WD ++EM +R + + + +IK G G V A+AT RM F C
Sbjct: 10 LAKAWQFEQMWDLMEEMDKRAHLH-IPAGIFSTVIKCYGRAGDVKGAVATLKRMSDDFSC 68
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P Y +I + G + A L +R D TY ++ C+ G
Sbjct: 69 TPVARTYEALIRVVMDAGQCDTA--------LSVYRAMADRVTYNLVALGCCRSG 115
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P V Y ++I+ALCR AR ++++M+ G PD TY L+ CK
Sbjct: 474 PSVATYTILIHALCRDNRLQAARQIIDKMKGQGV--LPDAITYNTLLHCLCK 523
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + +T T LI L + + A +MK PD YN +++ LC+ ++
Sbjct: 470 NGVSPSVATYTILIHALCRDNRLQAARQIIDKMKGQGVLPDAITYNTLLHCLCKNELLDE 529
Query: 223 ARFLLEQME 231
AR LL +M+
Sbjct: 530 ARLLLREMK 538
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE ++ A G L EM RG T T LI EG +++AL F
Sbjct: 316 CKERRLLDAEG--------LLNEMRERGVPP--DLCTFTTLIHGYCIEGKLDKALQLFDT 365
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M R RPD+ YN +I+ +CR G+ +KA L + M P+ TY+ILI S+C+
Sbjct: 366 MLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMH--SREIFPNHVTYSILIDSHCEK 423
Query: 255 G 255
G
Sbjct: 424 G 424
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+FAR + +L+EM R G + T +I GL+++AL M C
Sbjct: 244 LFARRGKMDHAMAYLREM--RCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGC 301
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV YN ++N LC+ A LL +M G PPD+ T+T LI YC G
Sbjct: 302 LPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGV--PPDLCTFTTLIHGYCIEG 354
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W+ KEM G V + T+ LI G + EAL + M+ +PD+ +++ +I
Sbjct: 185 WEVFKEMDDFGVAPDVRSFTI--LIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLI 242
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
R G + A L +M G PD YT++I +C+ G+ +
Sbjct: 243 GLFARRGKMDHAMAYLREMRCFGL--VPDGVIYTMVIGGFCRAGLMS 287
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
+ EM +R V T V ++ G A+A M +P + YN V+ L
Sbjct: 118 ISEMEKRCVFPDVVTHNV--MVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGL 175
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CR G ++KA + ++M+ F PDV ++TILI +C+ G
Sbjct: 176 CRSGMWDKAWEVFKEMD--DFGVAPDVRSFTILIGGFCRVG 214
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T ++K L G+ ++A F M F PDV ++ ++I CRVG +A + ++M
Sbjct: 167 TYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEM 226
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + PD+ +++ LI + + G
Sbjct: 227 RHRGIK--PDLVSFSCLIGLFARRG 249
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFL-KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ R NV FL K M + + +L+T +T LI +E +++A M++ +
Sbjct: 455 YCRSGNVSKGQKFLQKMMVNKVSPDLITYNT---LIHGYIKEDKMHDAFKLLNMMEKEKV 511
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PDV YN++IN GN +A ++ E+M G PD YTY +I+ + G
Sbjct: 512 QPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIE--PDRYTYMSMINGHVTAG 564
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI E+G V +A M P++ YN +I CR GN +K + L++M
Sbjct: 412 TYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKM 471
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ + PD+ TY LI Y K
Sbjct: 472 MVN--KVSPDLITYNTLIHGYIK 492
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 4/129 (3%)
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186
F N VT + V+ + FL EM +G L T +IK G V+
Sbjct: 405 EIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGI--LPNIMTYNSIIKGYCRSGNVS 462
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+ +M + PD+ YN +I+ + + A LL ME + PDV TY +
Sbjct: 463 KGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKE--KVQPDVVTYNM 520
Query: 247 LISSYCKYG 255
LI+ + +G
Sbjct: 521 LINGFSVHG 529
>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
Length = 969
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ +K M R+G + TST + +I L E V +A F MK PDVY Y ++I
Sbjct: 440 FQIIKLMMRKGF--VPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILI 497
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++ C+VG +AR ++ME G C P V TYT L+ +Y K
Sbjct: 498 DSFCKVGLIEQARSWFDEMESVG--CSPSVVTYTALLHAYLK 537
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T T T LI + ++ ++ A+ +M + C P+V Y +I+ LCR+G KA
Sbjct: 676 GYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKA 735
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL ME G C P+V TYT LI K G
Sbjct: 736 LKLLSMMEKRG--CNPNVVTYTSLIDGLGKSG 765
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD Y+ VI LC KA L ++M+ G PDVYTYTILI S+CK G+
Sbjct: 453 PDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGV--IPDVYTYTILIDSFCKVGL 505
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL + G + T T LI + GL+ +A + F M+ C P V Y +++A
Sbjct: 475 FLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHA 534
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +A + +M G C P+ TY+ L+ CK G
Sbjct: 535 YLKTKQVPQASDIFHRMVDAG--CAPNTITYSALVDGLCKAG 574
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT M R + L M +RG V T T LI LG+ G V+ +L
Sbjct: 715 NVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVT--YTSLIDGLGKSGKVDMSLQ 772
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
F +M C P+ Y V+IN C G ++A LL +M+
Sbjct: 773 LFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMK 813
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 66/176 (37%), Gaps = 11/176 (6%)
Query: 80 QRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMG 139
+R L++ D + + V+V + R P+ F+ W ER + H +
Sbjct: 92 ERFLRRHRDFLNDAVVVAVLRSVRTPEL-------CVRFFLWAERQVGYSHTGACYNALA 144
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
V + + L+E+ + V + +++ G +AL R+K F
Sbjct: 145 EVLHFDDRARTTERLLREIGE--DDREVLGRLLNVIVRKCCRHGAWAKALEELGRLKDFG 202
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RP YN ++ L G + + ++M GF D +T + CK G
Sbjct: 203 YRPSGATYNALVQVLATAGQMDMGFRVQKEMSELGF--CTDKFTVGCFAQALCKEG 256
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFR 199
FA+ +G W M R + +L TV C +I L E L +EA++ +RM+
Sbjct: 248 FAQALCKEGRWSDALVMIEREDFKL---DTVLCTQMISGLMEASLFDEAISFLHRMRCNS 304
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C P+V Y ++ + + ++ M G C P+ + L+ SYC
Sbjct: 305 CIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEG--CNPNPSLFNSLVHSYC 355
>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
Length = 399
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++ A M + C PDV Y+ +I+ LCR G+ +K LLE+M G C PDV TY
Sbjct: 244 LDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRG--CKPDVVTY 301
Query: 245 TILISSYCKYG 255
T+L++ CK G
Sbjct: 302 TVLVTGLCKAG 312
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
++ D L+EM ++ G T S + L + G V EA+ MK C+PDV
Sbjct: 31 AGELQAAMDLLREMEQQ-PGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDV 89
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+N +I LC+ G ++A+ +L++ME GF ++ TY LI+ G
Sbjct: 90 VTFNTLIAGLCKAGRLDEAQQVLDEMERSGF--AANLVTYNTLINGLSSAG 138
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 155 LKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM R G LVT +T LI L G EA+ M+ PD YN +I+
Sbjct: 112 LDEMERSGFAANLVTYNT---LINGLSSAGRSGEAVLV---MQGMTTTPDTQTYNAIIHG 165
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C+ G ++A LE+M+ C PD +TY+ILI+ CK
Sbjct: 166 FCKSGEIDRAYGFLEEMKQRA-GCSPDTFTYSILINGLCK 204
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + ++ + L M G ++VT ST+ I L G V++ A +M C
Sbjct: 238 YCKAQDLDRARELLSSMLEHGCAPDVVTYSTI---IDGLCRCGDVDKGFALLEKMVSRGC 294
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+PDV Y V++ LC+ G +A L+++M G C P+ TY+++ CK
Sbjct: 295 KPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDG--CTPNAVTYSLVFDGLCK 345
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 151 LWDFLKEMSRRGNGELV--------TTSTVTCLIKVLGEEGLVNEALATFYRMKQ-FRCR 201
L + L R G LV T T +I + G ++ A MKQ C
Sbjct: 130 LINGLSSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCS 189
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD + Y+++IN LC+ N KA LL++M + C V + L+ YCK
Sbjct: 190 PDTFTYSILINGLCKSSNLRKADELLQEM-IGRKDCCASVVAFNTLVDGYCK 240
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRC 200
F + + + FL+EM +R G T T + LI L + + +A M + C
Sbjct: 166 FCKSGEIDRAYGFLEEMKQRA-GCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDC 224
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V A+N +++ C+ + ++AR LL M G C PDV TY+ +I C+ G
Sbjct: 225 CASVVAFNTLVDGYCKAQDLDRARELLSSMLEHG--CAPDVVTYSTIIDGLCRCG 277
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R +V + L++M RG V T TV L+ L + G + EA RM + C
Sbjct: 273 LCRCGDVDKGFALLEKMVSRGCKPDVVTYTV--LVTGLCKAGKMVEACRLVKRMLEDGCT 330
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
P+ Y++V + LC++ + A LL + G R V T+L+S
Sbjct: 331 PNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKG-RVTDVVAFETLLLS 377
>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
and contains a RepB PF|01051 protein and multiple PPR
PF|01535 repeats [Arabidopsis thaliana]
Length = 613
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 129 FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNE 187
F N VT + F + V+ + +EMS+RG G VT +T LI+ L + G +
Sbjct: 376 FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT---LIQGLFQAGDCDM 432
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A F +M PD+ Y+++++ LC+ G KA + E ++ + PD+YTY I+
Sbjct: 433 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS--KMEPDIYTYNIM 490
Query: 248 ISSYCKYG 255
I CK G
Sbjct: 491 IEGMCKAG 498
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ L + G + +AL F +++ + PD+Y YN++I +C+ G L +
Sbjct: 451 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 510
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQ 257
L G + P+V YT +IS +C+ G++
Sbjct: 511 SLKGVK--PNVIIYTTMISGFCRKGLK 535
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI L +EA+A RM C+PD++ Y V+N LC+ G+ + A LL+
Sbjct: 169 TVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLK 228
Query: 229 QMELPGFRCPPDVYTYTILISSYCKY 254
+ME + DV YT +I + C Y
Sbjct: 229 KMEKG--KIEADVVIYTTIIDALCNY 252
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ M RG +L T TV + L + G ++ AL+ +M++ + DV Y +I+
Sbjct: 191 LIDRMVARGCQPDLFTYGTV---VNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIID 247
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
ALC N N A L +M+ G R P+V TY LI C YG
Sbjct: 248 ALCNYKNVNDALNLFTEMDNKGIR--PNVVTYNSLIRCLCNYG 288
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI +EG + EA + M + PD++ Y+ +IN C ++A+ + E M
Sbjct: 311 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 370
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C P+V TY LI +CK
Sbjct: 371 --ISKDCFPNVVTYNTLIKGFCK 391
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L VN+AL F M RP+V YN +I LC G ++ A LL M
Sbjct: 243 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-- 300
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+ P+V T++ LI ++ K G
Sbjct: 301 IERKINPNVVTFSALIDAFVKEG 323
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
RM+ R D+Y+YN++IN CR A +L +M G+ PD+ T + L++ YC
Sbjct: 89 RMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYE--PDIVTLSSLLNGYC 145
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+ F M Q R P + +N +++A+ ++ F+ L E+M+ R D+Y+Y
Sbjct: 45 LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQ--NLRISYDLYSY 102
Query: 245 TILISSYCK 253
ILI+ +C+
Sbjct: 103 NILINCFCR 111
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+A +M +P+ +N +I+ L ++A L+++M G C PD++TY
Sbjct: 150 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARG--CQPDLFTY 207
Query: 245 TILISSYCKYG 255
+++ CK G
Sbjct: 208 GTVVNGLCKRG 218
>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 579
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G T+T T LI+ + EG + EAL F +M RPDV Y +IN LC+VGN + A
Sbjct: 126 GHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAA 185
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LL M C P+V+ Y +I S CK
Sbjct: 186 IRLLGSMVQK--NCQPNVFAYNTIIDSLCK 213
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L + + EA+A ++ PD+ N+ I+ +CR G AR L + G
Sbjct: 417 LLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKG 476
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
+ PDV+TY+I+I+ C+ G+
Sbjct: 477 LQ--PDVWTYSIMINGLCRRGL 496
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
++ G + L F K + ++VT T LI L + G + A+ M Q C
Sbjct: 141 IYVEGKIGEALHLFDKMIGEGFRPDVVTYGT---LINGLCKVGNTSAAIRLLGSMVQKNC 197
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+P+V+AYN +I++LC+ +A L +M G PD++TY LI + C
Sbjct: 198 QPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGI--SPDIFTYNSLIHALC 247
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 18/124 (14%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+ CKE + A D + +M +RG V T T L E ++EA+
Sbjct: 279 DALCKEGKVTEAH--------DVVDKMIQRGVEPNVVTYTALMDGHCLLSE--MDEAVKV 328
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM---ELPGFRCPPDVYTYTILI 248
F M C P+V +YN +IN C++ +KA +L +M EL PD TY+ LI
Sbjct: 329 FDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQEL-----IPDTVTYSTLI 383
Query: 249 SSYC 252
C
Sbjct: 384 HGLC 387
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ L +EG V EA +M Q P+V Y +++ C + ++A + + M G
Sbjct: 277 VVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKG 336
Query: 235 FRCPPDVYTYTILISSYCK 253
C P+V +Y LI+ YCK
Sbjct: 337 --CMPNVISYNTLINGYCK 353
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L ++ V EA F M PD++ YN +I+ALC + + LL +M
Sbjct: 207 IIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEM--VD 264
Query: 235 FRCPPDVYTYTILISSYCKYGMQT 258
+ PDV ++ ++ + CK G T
Sbjct: 265 SKIMPDVVSFNTVVDALCKEGKVT 288
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
M + PDV ++N V++ALC+ G +A ++++M G P+V TYT L+ +C
Sbjct: 261 EMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVE--PNVVTYTALMDGHC 317
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++ A+++F RM + + P +N ++ ++ ++ + + L QM+ F PP++YT
Sbjct: 42 IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMD--SFGIPPNIYTL 99
Query: 245 TILISSYC 252
ILI+S+C
Sbjct: 100 HILINSFC 107
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A + ++ + +PD + +I + G +A L ++M GFR PDV TY L
Sbjct: 115 AFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFR--PDVVTYGTL 172
Query: 248 ISSYCKYG 255
I+ CK G
Sbjct: 173 INGLCKVG 180
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT ST L++ GLV++A M C PDVY Y +++ C+VG +AR
Sbjct: 391 DVVTFST---LVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEAR 447
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
+L++M G C P+V TYT LI ++C+ G T
Sbjct: 448 RVLKRMAKRG--CQPNVVTYTALIDAFCRAGKPT 479
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G ++EA F +M++ C PDV + +++ LC+ +A+ +LE ME
Sbjct: 188 LIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETME--D 245
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+V TY+ LI CK G
Sbjct: 246 RNCTPNVITYSSLIDGLCKTG 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R V + ++M NG + T L+ L GL++EA M++ +
Sbjct: 87 FCRQTKVDTAYKLFRQMVE--NGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQ 144
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD ++Y+ ++ LC+ G + A + E + CPPDV Y+ LI+ CK G
Sbjct: 145 PDKFSYDTLMAGLCKTGKIDMALKVFE--DNSNGDCPPDVVAYSTLIAGLCKTG 196
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 152 WDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
++ L EM RG + + T L+ L + G ++ AL F C PDV AY+ +
Sbjct: 132 YELLDEMRERGLQPDKFSYDT---LMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTL 188
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
I LC+ G ++A L E+M C PDV T+T L+ CK
Sbjct: 189 IAGLCKTGRLDEACKLFEKMRENS--CEPDVVTFTALMDGLCK 229
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + + V + LKEM G +VT STV I + V+ A F +M + C
Sbjct: 52 FCKVHKVHRAYLLLKEMKESGLAPNVVTYSTV---IHGFCRQTKVDTAYKLFRQMVENGC 108
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++ YN +++ LCR G ++A LL++M G + PD ++Y L++ CK G
Sbjct: 109 MPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQ--PDKFSYDTLMAGLCKTG 161
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L + G V +A F RM P+V YN +I+ C + A L+E+M
Sbjct: 254 TYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEM 313
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C PD+ TY LI CK G
Sbjct: 314 TATG--CLPDIITYNTLIDGLCKTG 336
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 54/147 (36%), Gaps = 35/147 (23%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F N V ++EM+ G L T LI L + G EA F MK C
Sbjct: 297 FCMTNGVDSALLLMEEMT--ATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCN 354
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQM------------------------------- 230
PDV Y+ +I C++ + AR L + M
Sbjct: 355 PDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERL 414
Query: 231 --ELPGFRCPPDVYTYTILISSYCKYG 255
E+ C PDVYTYT L+ +CK G
Sbjct: 415 LEEMVASDCSPDVYTYTSLVDGFCKVG 441
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I L + + EA F +MK+ P+ + YNV+IN C+V ++A LL++M
Sbjct: 9 TWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEM 68
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ G P+V TY+ +I +C+
Sbjct: 69 KESGL--APNVVTYSTVIHGFCR 89
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ + G + EA RM + C+P+V Y +I+A CR G A LLE+M
Sbjct: 429 TYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEM 488
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + P+V TY LI +C G
Sbjct: 489 VGNGVQ--PNVITYRSLIGGFCGTG 511
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + F R + L+EM GNG T LI G + EA
Sbjct: 461 NVVTYTALIDAFCRAGKPTVAYKLLEEMV--GNGVQPNVITYRSLIGGFCGTGDLEEARK 518
Query: 191 TFYRMKQFR-CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
R+++ C+ D++AY V+++ LCR G + A LLE ++ G PP Y LI
Sbjct: 519 MLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGT--PPRHDIYVALIR 576
Query: 250 SYCK 253
C+
Sbjct: 577 GLCQ 580
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ L + + EA M+ C P+V Y+ +I+ LC+ G A+ + ++M
Sbjct: 219 TFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRM 278
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
+ G P+V TY LI +C
Sbjct: 279 IVRGIE--PNVVTYNSLIHGFC 298
>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
Length = 399
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++ A M + C PDV Y+ +I+ LCR G+ +K LLE+M G C PDV TY
Sbjct: 244 LDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRG--CKPDVVTY 301
Query: 245 TILISSYCKYG 255
T+L++ CK G
Sbjct: 302 TVLVTGLCKAG 312
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
++ D L+EM ++ G T S + L + G V EA+ MK C+PDV
Sbjct: 31 AGELQAAMDLLREMEQQ-PGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDV 89
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+N +I LC+ G ++A+ +L++ME GF ++ TY LI+ G
Sbjct: 90 VTFNTLIAGLCKAGRLDEAQQVLDEMERSGF--AANLVTYNTLINGLSSAG 138
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 155 LKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM R G LVT +T LI L G EA+ M+ PD YN +I+
Sbjct: 112 LDEMERSGFAANLVTYNT---LINGLSSAGRSGEAVLV---MQGMTTTPDTQTYNAIIHG 165
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C+ G ++A LE+M+ C PD +TY+ILI+ CK
Sbjct: 166 FCKSGEIDRAYGFLEEMKQRA-GCSPDTFTYSILINGLCK 204
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + ++ + L M G ++VT ST+ I L G V++ A +M C
Sbjct: 238 YCKAQDLDRARELLSSMLEHGCAPDVVTYSTI---IDGLCRCGDVDKGFALLEKMVSRGC 294
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+PDV Y V++ LC+ G +A L+++M G C P+ TY+++ CK
Sbjct: 295 KPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDG--CTPNAVTYSLVFDGLCK 345
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 151 LWDFLKEMSRRGNGELV--------TTSTVTCLIKVLGEEGLVNEALATFYRMKQ-FRCR 201
L + L R G LV T T +I + G ++ A MKQ C
Sbjct: 130 LINGLSSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCS 189
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD + Y+++IN LC+ N KA LL++M + C V + L+ YCK
Sbjct: 190 PDTFTYSILINGLCKSSNLRKADELLQEM-IGRKDCCASVVAFNTLVDGYCK 240
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRC 200
F + + + FL+EM +R G T T + LI L + + +A M + C
Sbjct: 166 FCKSGEIDRAYGFLEEMKQRA-GCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDC 224
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V A+N +++ C+ + ++AR LL M G C PDV TY+ +I C+ G
Sbjct: 225 CASVVAFNTLVDGYCKAQDLDRARELLSSMLEHG--CAPDVVTYSTIIDGLCRCG 277
>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
lyrata]
gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
lyrata]
Length = 814
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE IV R D +K+M++ +G + T LI +L + +EAL
Sbjct: 361 CKEKRIVEVR--------DLMKKMAKE-HGLVRDQVTYNTLIHMLTKHDHADEALWFLKD 411
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
++ R D Y+ +++ALC+ G ++A+ L+ +M L CPPDV TYT +++ +C+
Sbjct: 412 AEEKGFRIDKVGYSAIVHALCKEGRMSEAKDLINEM-LSKGHCPPDVVTYTAVVNGFCRL 470
Query: 255 G 255
G
Sbjct: 471 G 471
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAY 207
+ LW FLK+ +G + + ++ L +EG ++EA M + C PDV Y
Sbjct: 404 EALW-FLKDAEEKGF--RIDKVGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTY 460
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V+N CR+G +KA+ LL+ M G++ P+ +YT L++ C+ G
Sbjct: 461 TAVVNGFCRLGEVDKAKKLLQIMHTHGYK--PNTVSYTALLNGLCRTG 506
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 10/141 (7%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A +F++W +R + + H+ + M V ++ +G L M RRG T
Sbjct: 193 ALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKMCQGARRVLVLMKRRG-----IYRTPEA 247
Query: 175 LIKVL---GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
++V+ G + +AL M++ P++ N I+ R KA LE+M+
Sbjct: 248 FLRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQ 307
Query: 232 LPGFRCPPDVYTYTILISSYC 252
+ G P+V TY +I YC
Sbjct: 308 VVGI--VPNVVTYNCMIRGYC 326
>gi|356575965|ref|XP_003556106.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g60050-like isoform 1 [Glycine max]
gi|356575967|ref|XP_003556107.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g60050-like isoform 2 [Glycine max]
Length = 480
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Query: 104 NPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN 163
N Q T A +F+ W + + H + ++A K LW + EM +G
Sbjct: 128 NCQNKTRCAKLAYKFFVWCSQQEGYQHTVNAYHLVMSIYAECEEFKALWRLVDEMIEKGL 187
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
T T LI+ GE GL + F + K F RP ++YN +++ L + +
Sbjct: 188 P--ATARTFNILIRTCGEAGLAKNLVERFIKSKTFNFRPFKHSYNAILHGLLVLNQYKLI 245
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
++ +QM L GF P D+ TY I++ Y KY
Sbjct: 246 EWVYQQMLLDGF--PSDILTYNIVM--YAKY 272
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM R NG T L+ VLG+ AL M++ P V + +I+
Sbjct: 283 LLDEMGR--NGFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIEPTVLHFTTLIDG 340
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L R GN + ++ ++M C PDV YT++I+ Y G
Sbjct: 341 LSRAGNLDACKYFFDEM--IKNECRPDVVAYTVMITGYVVAG 380
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+R N+ F EM + V TV V+ G + +AL + M
Sbjct: 341 LSRAGNLDACKYFFDEMIKNECRPDVVAYTVMITGYVVA--GEIEKALEMYQDMISREQV 398
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
P+V+ YN +I LC G F++A +L++ME G C P+ Y L S
Sbjct: 399 PNVFTYNSIIRGLCMAGKFDEACSMLKEMETKG--CSPNSVVYNTLAS 444
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V +G+ + L M R G T T LI L G ++ F M + C
Sbjct: 305 VLGKGDKPLAALNLLNHM--REMGIEPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNEC 362
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RPDV AY V+I G KA + + M P+V+TY +I C G
Sbjct: 363 RPDVVAYTVMITGYVVAGEIEKALEMYQDM--ISREQVPNVFTYNSIIRGLCMAG 415
>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
Length = 426
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I V +EG +EA+ + M + PDV+ YN +IN LC G ++A+ +L+ M
Sbjct: 187 TFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLM 246
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C PDV TY LI+ +CK
Sbjct: 247 VTKG--CLPDVVTYNTLINGFCK 267
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V +AL F M++ D+ YN+VI+ +C++GN A L + G + PDV +Y
Sbjct: 338 VEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLK--PDVVSY 395
Query: 245 TILISSYCK 253
T +IS +C+
Sbjct: 396 TTMISGFCR 404
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
TV+ LI + V +A+ +M++ RPDV YN +I+ C++G N A L ++M
Sbjct: 82 TVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRM 141
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G R D TY L++ C G
Sbjct: 142 ERDGVR--ADAVTYNSLVAGLCCSG 164
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTV---TCLIKVLGEEGLVNEALATFYRMKQ 197
F +GN V D + +M G ++V +T+ +C I GLVN+A+ F RM++
Sbjct: 90 FCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKI------GLVNDAVELFDRMER 143
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R D YN ++ LC G ++ A L+ M + P+V T+T +I + K G
Sbjct: 144 DGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDI--VPNVITFTAVIDVFVKEG 199
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
AL+ +M +F PDV + +IN C+ A L+ +ME GFR PDV Y +
Sbjct: 64 ALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFR--PDVVIYNTI 121
Query: 248 ISSYCKYGM 256
I CK G+
Sbjct: 122 IDGSCKIGL 130
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
++ F+ M+ D+Y+YN+VIN LCR F A ++ +M G+ PDV T + L
Sbjct: 29 VISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYE--PDVVTVSSL 86
Query: 248 ISSYCK 253
I+ +C+
Sbjct: 87 INGFCQ 92
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + V +EM++RG G+ +T +T+ I+ + G + A F RM
Sbjct: 265 FCKSKRVDEGTKLFREMAQRGLVGDTITYNTI---IQGYFQAGRPDAAQEIFSRMDS--- 318
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RP++ Y++++ LC KA L E M+ D+ TY I+I CK G
Sbjct: 319 RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIEL--DITTYNIVIHGMCKIG 371
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
VF + +EM+RR V T LI L G V+EA M C
Sbjct: 194 VFVKEGKFSEAMKLYEEMTRRCVDPDVFT--YNSLINGLCMHGRVDEAKQMLDLMVTKGC 251
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV YN +IN C+ ++ L +M G D TY +I Y + G
Sbjct: 252 LPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGL--VGDTITYNTIIQGYFQAG 304
>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV---TCLIKVLGEEGLVNEALA 190
TC +M +F + N ++ W EM R L +STV ++ VL +EG + +A
Sbjct: 194 TCNDMLSLFLKLNRMEMAWVLYAEMFR-----LRISSTVYTFNIMVNVLCKEGKLKKARE 248
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M+ +P+V +YN +I+ GN AR +L+ M + G PD YTY LIS
Sbjct: 249 FIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIE--PDSYTYGSLISG 306
Query: 251 YCKYG 255
CK G
Sbjct: 307 MCKEG 311
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
++R N K +D EM +G T T T LI VL + EA F ++
Sbjct: 412 YSRCGNAKKAFDLHNEMLSKGIEP--THVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS 469
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV +N +++ C GN +A LL++M+ PPD T+ L+ C+ G
Sbjct: 470 PDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSV--PPDEVTFNTLMQGRCREG 521
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE--EGLVNEALA 190
VT + V +R N +K D +++ +G V+ + V G G V A
Sbjct: 438 VTYTSLIYVLSRRNRMKEADDLFEKILDQG----VSPDVIMFNAMVDGHCANGNVERAFM 493
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M + PD +N ++ CR G +AR LL++M+ G + PD +Y LIS
Sbjct: 494 LLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIK--PDHISYNTLISG 551
Query: 251 YCKYG 255
Y + G
Sbjct: 552 YGRRG 556
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
NV+ + LKEM R+ V VT L++ EG V EA MK+ +PD
Sbjct: 487 NVERAFMLLKEMDRKS----VPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDH 542
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+YN +I+ R G+ A + ++M GF P + TY LI CK
Sbjct: 543 ISYNTLISGYGRRGDIKDAFRVRDEMLSIGFN--PTLLTYNALIKCLCK 589
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + + +++ + + EM ++G + + ST L+ L EG + EA
Sbjct: 331 NAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGI--MPSVSTYNLLVHALFMEGRMGEADD 388
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
M++ PD YN++IN R GN KA L +M G P TYT LI
Sbjct: 389 MIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIE--PTHVTYTSLI 444
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 5/139 (3%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+ KA EF ++E F N V+ + ++ N++G L M R G + T
Sbjct: 243 LKKAREFIGFMEGL-GFKPNVVSYNTIIHGYSSRGNIEGARRILDAM--RVKGIEPDSYT 299
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
LI + +EG + EA F +M + P+ YN +I+ C G+ +A ++M
Sbjct: 300 YGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMV 359
Query: 232 LPGFRCPPDVYTYTILISS 250
G P V TY +L+ +
Sbjct: 360 KKGIM--PSVSTYNLLVHA 376
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE R GL+D + E+ G + T LI +G + A +
Sbjct: 308 CKE-----GRLEEASGLFDKMVEI-----GLVPNAVTYNTLIDGYCNKGDLERAFSYRDE 357
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M + P V YN++++AL G +A ++++M G PD TY ILI+ Y +
Sbjct: 358 MVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGI--IPDAITYNILINGYSRC 415
Query: 255 G 255
G
Sbjct: 416 G 416
>gi|449532274|ref|XP_004173107.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 394
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D L+EM NG T T +I +E + A M + C+PDV+++N +I
Sbjct: 214 DILREMGE--NGCKPDTVTYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIG 271
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC+ G +KA LLE M P CPPDV +Y I+ C+
Sbjct: 272 WLCKEGKLDKAMDLLEDM--PRRGCPPDVLSYRIIFDGLCE 310
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
LKE N +LV+ + + LI L + G E M + C+PD YN +IN
Sbjct: 180 LKEEMVTSNVKLVS-AVYSTLISALFKHGRKEEVSDILREMGENGCKPDTVTYNAIINGH 238
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ + A ++++M G C PDV+++ +I CK G
Sbjct: 239 CKENDLESAHRVMDEMVEKG--CKPDVFSFNTIIGWLCKEG 277
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 144 RGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
+ N+++ + EM +G ++ + +T+ I L +EG +++A+ M + C P
Sbjct: 240 KENDLESAHRVMDEMVEKGCKPDVFSFNTI---IGWLCKEGKLDKAMDLLEDMPRRGCPP 296
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
DV +Y ++ + LC + +A +L++M G+
Sbjct: 297 DVLSYRIIFDGLCEMMQLKEATSILDEMIFKGY 329
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 147 NVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDV 204
++ +W EM +RG +VT T LI L + EAL M K + +P+
Sbjct: 102 DLDAVWGVFDEMQKRGVKPNVVTFGT---LIYGLSLNSKLKEALRLKEDMVKVYMIKPNA 158
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +I C VG N A L E+M + V Y+ LIS+ K+G
Sbjct: 159 SIYTTLIKGFCGVGELNFAFKLKEEMVTSNVKLVSAV--YSTLISALFKHG 207
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T++ LI V+ A + F +M + +PD +N +IN LC+VG F +A +
Sbjct: 132 TLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDF 191
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQT 258
E G C P VYTYT +I+ CK G T
Sbjct: 192 EASG--CQPTVYTYTTIINGLCKIGETT 217
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D K M NG L T + L+ +EG + +A F M+ +PD+ YN++I+
Sbjct: 431 DLFKNM--HSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILID 488
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
A+C+ GN AR L ++ + G P+V YT +I++ CK G+
Sbjct: 489 AMCKFGNLKDARKLFSELFVQGLL--PNVQIYTTIINNLCKEGL 530
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + G +A+ F + C+P VY Y +IN LC++G A L ++M
Sbjct: 167 TFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKM 226
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E G C P+V TY ILI S CK
Sbjct: 227 EEAG--CQPNVVTYNILIDSLCK 247
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
K+M G V T + LI L ++ LVNEAL F MK R PD++ YN +I
Sbjct: 222 LFKKMEEAGCQPNVVTYNI--LIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQG 279
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC + +A LL +M P+++T+ +L+ + CK G
Sbjct: 280 LCNFRRWKEASALLNEM--TSLNIMPNIFTFNVLVDAICKEG 319
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T +I L + G A F +M++ C+P+V YN++I++LC+ N+A +
Sbjct: 199 TVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIF 258
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKY 254
M+ R PD++TY LI C +
Sbjct: 259 SYMKAK--RISPDIFTYNSLIQGLCNF 283
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LIK + ++EA F M PD YN +I+ LC++G +A+ L + M G
Sbjct: 381 LIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNG 440
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD++TY++L+ +CK G
Sbjct: 441 NL--PDLFTYSMLLDGFCKEG 459
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G + EA F M PD++ Y+++++ C+ G KA L M+
Sbjct: 416 LIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTY 475
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ PD+ Y ILI + CK+G
Sbjct: 476 LK--PDIAMYNILIDAMCKFG 494
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 14/164 (8%)
Query: 93 NVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLW 152
N L+ G +R ++ + +N+ T F + CKE + A+G
Sbjct: 274 NSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQG------- 326
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
K M+ G ++VT S++ + E + EA F M C+PD ++YN++I
Sbjct: 327 -VFKTMTEMGVEPDVVTYSSLMYGYSLRME---IVEARKLFDAMITKGCKPDAFSYNILI 382
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ ++A+ L +M G PD Y LI C+ G
Sbjct: 383 KGYCKAKRIDEAKQLFNEMIHQGL--TPDNVNYNTLIHGLCQLG 424
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T +I L +EGL++EAL F M+ C PD ++YNV+I + + ++A
Sbjct: 510 GLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRA 569
Query: 224 RFLLEQMELPGFRCPPDVYTY 244
L+ +M GF T+
Sbjct: 570 AQLIGEMRDRGFVAEAGTTTW 590
>gi|12320851|gb|AAG50561.1|AC073506_3 hypothetical protein [Arabidopsis thaliana]
Length = 802
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 14/121 (11%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE IV R D +K+M++ +G + T LI +L + +EAL
Sbjct: 358 CKEKRIVEVR--------DLMKKMAKE-HGLVPDQVTYNTLIHMLTKHDHADEALWFLKD 408
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
++ R D Y+ +++ALC+ G ++A+ L+ +M+ CPPDV TYT +++ +C+
Sbjct: 409 AQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMD-----CPPDVVTYTAVVNGFCRL 463
Query: 255 G 255
G
Sbjct: 464 G 464
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
+ LW FLK+ +G + + ++ L +EG ++EA M C PDV Y
Sbjct: 401 EALW-FLKDAQEKGF--RIDKLGYSAIVHALCKEGRMSEAKDLINEMD---CPPDVVTYT 454
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V+N CR+G +KA+ LL+ M G + P+ +YT L++ C+ G
Sbjct: 455 AVVNGFCRLGEVDKAKKLLQVMHTHGHK--PNTVSYTALLNGMCRTG 499
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 87/212 (41%), Gaps = 16/212 (7%)
Query: 51 VLKSIPRFFFQSPRSIGRQTGFRHRTPLKQRILK----------KEADNIANNVLVLGPA 100
VLKSIP+ ++ R + RH PL + + + K + N + L P+
Sbjct: 118 VLKSIPQSREEAGRFDVEEDESRH--PLVREVGRLIGLRSSWNPKHEGQMRNLLRSLKPS 175
Query: 101 AYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSR 160
+ A +F++W +R + + H+ + M V ++ +G L M R
Sbjct: 176 QVCAVLRSQDDERVALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKLCQGSRRVLVLMKR 235
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
RG T + ++ G + +AL M++ P++ N I+ R
Sbjct: 236 RGI--YRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRL 293
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
KA LE+M++ G P+V TY +I YC
Sbjct: 294 EKALRFLERMQVVGI--VPNVVTYNCMIRGYC 323
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 3/124 (2%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N + C VF R N ++ FL+ M + G + T C+I+ + V EA+
Sbjct: 276 NLLICNTTIDVFVRANRLEKALRFLERM--QVVGIVPNVVTYNCMIRGYCDLHRVEEAIE 333
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M C PD +Y ++ LC+ + R L+++M PD TY LI
Sbjct: 334 LLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMA-KEHGLVPDQVTYNTLIHM 392
Query: 251 YCKY 254
K+
Sbjct: 393 LTKH 396
>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE-EGLVNEALATFYRMKQFR 199
+ N +K F K M G + V + V LIK L + G ++ A F M +
Sbjct: 129 ILVEENQLKVAMSFYKYMREMGVRQSVVSLNV--LIKALCKNSGTIDAAFEIFREMPKRG 186
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C PD Y Y +IN LC++G +A+ L ++M+ G C P V TY+ L+ C+ G
Sbjct: 187 CDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKG--CSPSVVTYSCLMHGLCQAG 240
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ KEM +G V T +CL+ L + G V+EA+ F +MK+ P+V+ Y+ +++
Sbjct: 212 ELFKEMDTKGCSPSVVT--YSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMD 269
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G +A LLE M R P++ TY+ LI+ CK G
Sbjct: 270 GLCKNGGSLEAMELLEMMVRK--RHKPNMVTYSTLINGLCKEG 310
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
+ ++ +EM +RG + T LI L + G EA F M C P V Y
Sbjct: 172 IDAAFEIFREMPKRGCDP--DSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTY 229
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++ LC+ GN ++A L ++M+ P+V+TY+ L+ CK G
Sbjct: 230 SCLMHGLCQAGNVDEAMGLFDKMKKKAIE--PNVFTYSSLMDGLCKNG 275
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
+ GL+D +K+ + N T + L+ L + G EA+ M + R +P++
Sbjct: 243 DEAMGLFDKMKKKAIEPN-----VFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMV 297
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
Y+ +IN LC+ G +A L++M+L G + PD Y +I+ +C
Sbjct: 298 TYSTLINGLCKEGKLAEAVETLDRMKLQGLK--PDAGLYGKIINGFC 342
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 160 RRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
+R +VT ST LI L +EG + EA+ T RMK +PD Y +IN C +
Sbjct: 290 KRHKPNMVTYST---LINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRK 346
Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTI 246
F +A L++M L + P+ T+++
Sbjct: 347 FQEAATYLDEMVLG--QISPNRVTWSL 371
>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 602
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ + V +A+ M++ C+PDV YNV+IN +C+ G ++A L M
Sbjct: 245 TYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNM 304
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
P + C P+V T+ I++ S C G
Sbjct: 305 --PSYGCKPNVITHNIILRSMCSTG 327
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT +T+ ++ L + G + EA+ R Q C PDV Y ++I A C +A
Sbjct: 207 DVVTYNTI---LRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAM 263
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL++M G C PDV TY +LI+ CK G
Sbjct: 264 KLLDEMRKKG--CKPDVVTYNVLINGICKEG 292
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E TC + G+ G +K L EM ++G V T V LI + +EG ++EA+
Sbjct: 251 EATCNDSGV----GQAMK----LLDEMRKKGCKPDVVTYNV--LINGICKEGRLDEAIKF 300
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
M + C+P+V +N+++ ++C G + A LL M G C P V T+ ILI+
Sbjct: 301 LNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKG--CSPSVVTFNILINFL 358
Query: 252 CK 253
C+
Sbjct: 359 CR 360
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ L+EM R+G +++T ST L++ LG EG V+EA+ F+ M+ +P YN ++
Sbjct: 474 ELLEEMRRKGLKPDIITYST---LLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIM 530
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
LC+ ++A L M G C P TYTILI
Sbjct: 531 LGLCKAQQTSRAIDFLAYMVEKG--CKPTEATYTILI 565
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
++L+ M RG ++VT +T L+ L ++G V+ A+ ++ C P + YN VI
Sbjct: 404 EYLEIMVSRGCYPDIVTYNT---LLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVI 460
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ L +VG A LLE+M G + PD+ TY+ L+ + G
Sbjct: 461 DGLTKVGKTEYAVELLEEMRRKGLK--PDIITYSTLLRGLGREG 502
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L +M R+G V T + LI L + L+ A+ +M + C P+ +YN +++
Sbjct: 335 LLSDMLRKGCSPSVVTFNI--LINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHG 392
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ ++A LE M G C PD+ TY L+++ CK G
Sbjct: 393 FCQEKKMDRAIEYLEIMVSRG--CYPDIVTYNTLLTALCKDG 432
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 11/139 (7%)
Query: 117 EFYHWVERFFH--FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
E ++ER + + + C + F R K ++ + G V T V
Sbjct: 124 EGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNV-- 181
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE-QMELP 233
LI + G +++AL RM PDV YN ++ +LC G +A +L+ Q++
Sbjct: 182 LIGGYCKSGEIDKALEVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQ-- 236
Query: 234 GFRCPPDVYTYTILISSYC 252
C PDV TYTILI + C
Sbjct: 237 -RECYPDVITYTILIEATC 254
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
Query: 124 RFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG 183
R F F + + +++ R ++ FL+ M +G ++ T LI+ G
Sbjct: 102 RSFEEFASNIHLRKL----VRNGELEEGLKFLERMIYQG--DIPDVIACTSLIRGFCRSG 155
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
+A ++ PDV YNV+I C+ G +KA +LE+M + PDV T
Sbjct: 156 KTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERMSV-----APDVVT 210
Query: 244 YTILISSYCKYG 255
Y ++ S C G
Sbjct: 211 YNTILRSLCDSG 222
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+E ++ A+ M C PD+ YN ++ ALC+ G + A +L Q+ G C P
Sbjct: 395 QEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKG--CSPV 452
Query: 241 VYTYTILISSYCKYG 255
+ TY +I K G
Sbjct: 453 LITYNTVIDGLTKVG 467
>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Vitis vinifera]
Length = 656
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV---TCLIKVLGEEGLVNEALA 190
TC +M +F + N ++ W EM R L +STV ++ VL +EG + +A
Sbjct: 216 TCNDMLSLFLKLNRMEMAWVLYAEMFR-----LRISSTVYTFNIMVNVLCKEGKLKKARE 270
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M+ +P+V +YN +I+ GN AR +L+ M + G PD YTY LIS
Sbjct: 271 FIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIE--PDSYTYGSLISG 328
Query: 251 YCKYG 255
CK G
Sbjct: 329 MCKEG 333
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
++R N K +D EM +G T T T LI VL + EA F ++
Sbjct: 434 YSRCGNAKKAFDLHNEMLSKGIEP--THVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS 491
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV +N +++ C GN +A LL++M+ PPD T+ L+ C+ G
Sbjct: 492 PDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSV--PPDEVTFNTLMQGRCREG 543
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE--EGLVNEALA 190
VT + V +R N +K D +++ +G V+ + V G G V A
Sbjct: 460 VTYTSLIYVLSRRNRMKEADDLFEKILDQG----VSPDVIMFNAMVDGHCANGNVERAFM 515
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M + PD +N ++ CR G +AR LL++M+ G + PD +Y LIS
Sbjct: 516 LLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIK--PDHISYNTLISG 573
Query: 251 YCKYG 255
Y + G
Sbjct: 574 YGRRG 578
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
NV+ + LKEM R+ V VT L++ EG V EA MK+ +PD
Sbjct: 509 NVERAFMLLKEMDRKS----VPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDH 564
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+YN +I+ R G+ A + ++M GF P + TY LI CK
Sbjct: 565 ISYNTLISGYGRRGDIKDAFRVRDEMLSIGFN--PTLLTYNALIKCLCK 611
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + + +++ + + EM ++G + + ST L+ L EG + EA
Sbjct: 353 NAVTYNTLIDGYCNKGDLERAFSYRDEMVKKG--IMPSVSTYNLLVHALFMEGRMGEADD 410
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
M++ PD YN++IN R GN KA L +M G P TYT LI
Sbjct: 411 MIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIE--PTHVTYTSLI 466
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 5/139 (3%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+ KA EF ++E F N V+ + ++ N++G L M R G + T
Sbjct: 265 LKKAREFIGFMEGL-GFKPNVVSYNTIIHGYSSRGNIEGARRILDAM--RVKGIEPDSYT 321
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
LI + +EG + EA F +M + P+ YN +I+ C G+ +A ++M
Sbjct: 322 YGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMV 381
Query: 232 LPGFRCPPDVYTYTILISS 250
G P V TY +L+ +
Sbjct: 382 KKGIM--PSVSTYNLLVHA 398
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE R GL+D + E+ G + T LI +G + A +
Sbjct: 330 CKE-----GRLEEASGLFDKMVEI-----GLVPNAVTYNTLIDGYCNKGDLERAFSYRDE 379
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M + P V YN++++AL G +A ++++M G PD TY ILI+ Y +
Sbjct: 380 MVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGI--IPDAITYNILINGYSRC 437
Query: 255 G 255
G
Sbjct: 438 G 438
>gi|242063152|ref|XP_002452865.1| hypothetical protein SORBIDRAFT_04g033840 [Sorghum bicolor]
gi|241932696|gb|EES05841.1| hypothetical protein SORBIDRAFT_04g033840 [Sorghum bicolor]
Length = 551
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 94/236 (39%), Gaps = 40/236 (16%)
Query: 45 IESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLKQRILK------------KEADNI-- 90
+E + ++L++ R + ++ R RTP + L KEA+ +
Sbjct: 182 VEDLLEILRAYTEKHLTHMRKLAKKRRVRLRTPPETDALNVLLDAFCKCGMVKEAEAVFG 241
Query: 91 -----------ANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMG 139
++L G R+P+K + + + H E F + E C G
Sbjct: 242 RVKRRLLGNAETYSILFFGWCRARDPKKAMKVLEEMIQMKHTPESFTYIAAIESFCSA-G 300
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELV---TTSTVTCLIKVLGEEGLVNEALATFYRMK 196
+V + + L++F+ R G + T T + +I L + + E M+
Sbjct: 301 LV----SEARELFEFM-----RTEGSTISSPTAKTYSIMIVALAKADRMEECFELLSDMR 351
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C PDV Y +I +C VG + A +LE+M GF PPD+ TY ++ C
Sbjct: 352 SCGCMPDVSTYKELIEGMCLVGKLDAAYRVLEEMGRAGF--PPDIVTYNCFLNVLC 405
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M + A+ + ++ ++ L +M R G + ST LI+ + G ++ A M +
Sbjct: 330 MIVALAKADRMEECFELLSDM--RSCGCMPDVSTYKELIEGMCLVGKLDAAYRVLEEMGR 387
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ YN +N LC + + A L E+M C P V+TY +L+ + + G
Sbjct: 388 AGFPPDIVTYNCFLNVLCSLRKADDALELCERM--IEAHCEPSVHTYNMLMVMFFEMG 443
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T + L+ + G+V EA A F R+K+ R + Y+++ CR + KA +LE
Sbjct: 217 TDALNVLLDAFCKCGMVKEAEAVFGRVKR-RLLGNAETYSILFFGWCRARDPKKAMKVLE 275
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
+M + P+ +TY I S+C G+
Sbjct: 276 EM--IQMKHTPESFTYIAAIESFCSAGL 301
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 13/137 (9%)
Query: 122 VERFFHFFHNEVTCKEMGIVFARGNNVKGL---------WDFLKEMSRRGNGELVTTSTV 172
+E F + +C M V ++G+ + L+EM R G + T
Sbjct: 340 MEECFELLSDMRSCGCMPDVSTYKELIEGMCLVGKLDAAYRVLEEMGRAGFPPDIVT--Y 397
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
C + VL ++AL RM + C P V+ YN+++ +G ++A + +M+
Sbjct: 398 NCFLNVLCSLRKADDALELCERMIEAHCEPSVHTYNMLMVMFFEMGEAHRALDIWLEMDT 457
Query: 233 PGFRCPPDVYTYTILIS 249
G C + TY I+I
Sbjct: 458 RG--CQRAIDTYEIMID 472
>gi|356534408|ref|XP_003535747.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35130-like [Glycine max]
Length = 357
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+G N + K M + TT T T LI + G+ G AL F+ M +C+P+
Sbjct: 18 KGGNSDKAEEIFKRMKKDACKS--TTETYTMLINLYGKAGKSFMALILFHEMTTHKCKPN 75
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+ Y ++NA R G KA + EQM+ G PDVY Y L+ +Y
Sbjct: 76 ICTYTALVNAFVREGLCEKAEEVFEQMQEAGLE--PDVYAYNALMETY 121
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ EGL +A F +M++ PDVYAYN ++ F++A +
Sbjct: 78 TYTALVNAFVREGLCEKAEEVFEQMQEAGLEPDVYAYNALMETYKFSSPFSRAGYPYGAA 137
Query: 231 E----LPGFRCPPDVYTYTILISSYCKYGMQ 257
E + C PD +Y IL+ +Y K G Q
Sbjct: 138 EIFSLMQHMGCEPDRASYNILVDAYGKAGFQ 168
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
I L + G ++A F RMK+ C+ Y ++IN + G A L +M
Sbjct: 13 INGLMKGGNSDKAEEIFKRMKKDACKSTTETYTMLINLYGKAGKSFMALILFHEM--TTH 70
Query: 236 RCPPDVYTYTILISSYCKYGM 256
+C P++ TYT L++++ + G+
Sbjct: 71 KCKPNICTYTALVNAFVREGL 91
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ G+ G ++A A F MK+ P + ++ V+ +A ++GN NK +L QM G
Sbjct: 158 LVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLQSAYSKMGNVNKCEEILNQMCKSG 217
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ + Y +++ Y + G
Sbjct: 218 LKL--NTYVLKSMLNLYGRLG 236
>gi|224576643|gb|ACN56995.1| At1g03560-like protein [Capsella grandiflora]
Length = 196
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 84 RXNGXAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 143
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++A L ++ME C VYTYTILIS K
Sbjct: 144 DEAMTLFKRMEEEE-GCDQTVYTYTILISGMFK 175
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +NE A F M + +P+V Y V+I+ + G+ A LL +M GF+ PDV
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK--PDVV 58
Query: 243 TYTILISSYCKYG 255
TY+++++ CK G
Sbjct: 59 TYSVVVNGLCKNG 71
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 39/133 (29%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC-- 215
M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+N LC
Sbjct: 13 MIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKN 70
Query: 216 ---------------------------------RVGNFNKARFLLEQMELPGFRCPPDVY 242
+ G ++A L E+M G C D Y
Sbjct: 71 GRVEEALDYFQTCRXNGXAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKG--CTRDSY 128
Query: 243 TYTILISSYCKYG 255
Y LI + K+G
Sbjct: 129 CYNALIDALTKHG 141
>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats [Arabidopsis thaliana]
gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 632
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ +M +RG +LVT TV + L + G ++ AL+ +M++ + DV YN +I+
Sbjct: 210 LVDQMVQRGCQPDLVTYGTV---VNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIID 266
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ + + A L +M+ G R PDV+TY+ LIS C YG
Sbjct: 267 GLCKYKHMDDALNLFTEMDNKGIR--PDVFTYSSLISCLCNYG 307
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 129 FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNE 187
F N VT + F + V+ + +EMS+RG LV T T T LI + +
Sbjct: 395 FPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRG---LVGNTVTYTTLIHGFFQARDCDN 451
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A F +M P++ YN++++ LC+ G KA + E ++ PD+YTY I+
Sbjct: 452 AQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTME--PDIYTYNIM 509
Query: 248 ISSYCKYG 255
I CK G
Sbjct: 510 IEGMCKAG 517
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R ++ L D + EM + + T T T LI L +EA+A +M Q C+PD
Sbjct: 168 RISDAVALVDQMVEMGYKPD-----TFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPD 222
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+ Y V+N LC+ G+ + A LL++ME + DV Y +I CKY
Sbjct: 223 LVTYGTVVNGLCKRGDIDLALSLLKKMEKG--KIEADVVIYNTIIDGLCKY 271
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + G + +A+ F +++ PD+Y YN++I +C+ G L +
Sbjct: 470 TYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNL 529
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L G P+V Y +IS +C+ G
Sbjct: 530 SLKGV--SPNVIAYNTMISGFCRKG 552
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI +EG + EA + M + PD++ Y+ +IN C ++A+ + E M
Sbjct: 330 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 389
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C P+V TY+ LI +CK
Sbjct: 390 --ISKDCFPNVVTYSTLIKGFCK 410
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++AL F M RPDV+ Y+ +I+ LC G ++ A LL M + P+V T+
Sbjct: 274 MDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM--IERKINPNVVTF 331
Query: 245 TILISSYCKYG 255
+ LI ++ K G
Sbjct: 332 SALIDAFVKEG 342
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++A+ F M + R P + +N +++A+ ++ F L EQM+ G D+YTY
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGI--SHDLYTY 121
Query: 245 TILISSYCK 253
+I I+ +C+
Sbjct: 122 SIFINCFCR 130
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+A +M + +PD + + +I+ L ++A L++QM G C PD+ TY
Sbjct: 169 ISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG--CQPDLVTY 226
Query: 245 TILISSYCKYG 255
+++ CK G
Sbjct: 227 GTVVNGLCKRG 237
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+M+ D+Y Y++ IN CR + A +L +M G+ PD+ T + L++ YC
Sbjct: 108 QMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYE--PDIVTLSSLLNGYC 164
>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
Length = 586
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 10/144 (6%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++KA+EF VE + + K M + RG + F + + R V +
Sbjct: 206 LSKASEFGCRVEAYAYN-------KLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFN 258
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
V +IK + G V +AL RM +F C PD +N++++ LCR ++ +L +++
Sbjct: 259 V--VIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQ 316
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
G C P+V T+T +IS YCK G
Sbjct: 317 RDGV-CMPNVVTFTSVISGYCKAG 339
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIV--FARGNNVKGLWDFLKEMSRRGNGELVTT 169
+ KA E VER F + T IV R N V + L+ + R G +
Sbjct: 270 VQKALEL---VERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVC-MPNV 325
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T T +I + G + +A+A + M P+ YNV+IN +VG+ A + +Q
Sbjct: 326 VTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQ 385
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M RCPPDV T++ LI YC+ G
Sbjct: 386 MTR--LRCPPDVVTFSSLIDGYCRCG 409
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
+G + T T LI G+ G + A+ + +M + RC PDV ++ +I+ CR G +
Sbjct: 353 ASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLD 412
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A + M R P+VYT++I+I S CK
Sbjct: 413 DALRIWSDMA--QHRIQPNVYTFSIIIHSLCK 442
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV----YAYNVVINALCRVGNFNKARFL 226
T + +I L ++ +EA+ + + RPD+ + YN VI+ LC+ G ++A +
Sbjct: 432 TFSIIIHSLCKQNRSDEAICL---LNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLI 488
Query: 227 LEQMELPGFRCPPDVYTYTILISSYC 252
+ ME G C PD YTYTILI YC
Sbjct: 489 RKGMEEKG--CRPDKYTYTILIIGYC 512
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I VL + G V+EA M++ CRPD Y Y ++I C ++A +M G
Sbjct: 472 VIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAG 531
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
C PD T IS K GM
Sbjct: 532 --CSPDSITVNCFISCLLKAGM 551
>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M +F G KG F + +RR + + + LI L + G NE FY MK+
Sbjct: 524 MDCMFKAGEPEKGRAMFEEIKARRF---VPDARSYSILIHGLIKAGFANETYELFYSMKE 580
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C D AYN+VI+ C+ G NKA LLE+M+ GF P V TY +I K
Sbjct: 581 QGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFE--PTVVTYGSVIDGLAK 634
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+N+A E++ W ER H + + +V AR N L L EMS G G V
Sbjct: 78 VNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVN--- 134
Query: 172 VTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
TC+ VLG + + E M++F+ RP AY +I A V + + L +Q
Sbjct: 135 -TCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQ 193
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M+ G+ P V+ +T LI + K G
Sbjct: 194 MQELGYE--PTVHLFTTLIRGFAKEG 217
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + +NEAL F MK+ +C P+ Y ++IN LC+V FNKA ++M
Sbjct: 694 TWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEM 753
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G + P +YT +IS K G
Sbjct: 754 QKQGMK--PSTISYTTMISGLAKAG 776
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 6/143 (4%)
Query: 114 KATEFYHWVERFFHFFHNE-VTCKEMGIVFARGNNVKGLWDFLKEM--SRRGNGELVTTS 170
KA VE F H N V C G G +D + +R G + +
Sbjct: 285 KANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVI 344
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
C++ L + G V+EAL F MK+ P++ YN++I+ LCR G + A L + M
Sbjct: 345 AYNCILTCLRKMGKVDEALKVFEEMKK-DAAPNLSTYNILIDMLCRAGKLDTAFELRDSM 403
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ G P+V T I++ CK
Sbjct: 404 QKAGLF--PNVRTVNIMVDRLCK 424
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LI+ +EG V+ AL+ MK D+ YNV I++ +VG + A
Sbjct: 202 TVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFF 261
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++E G + PD TYT +I CK
Sbjct: 262 HEIEANGLK--PDEVTYTSMIGVLCK 285
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++ A +F+H +E +EVT M V + N + + + + + N + T
Sbjct: 254 VDMAWKFFHEIEAN-GLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEK--NRRVPCTYA 310
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+I G G +EA + R + P V AYN ++ L ++G ++A + E+M+
Sbjct: 311 YNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK 370
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
P++ TY ILI C+ G
Sbjct: 371 KDA---APNLSTYNILIDMLCRAG 391
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V W F E+ NG T T +I VL + ++EA+ F +++ R
Sbjct: 248 FGKVGKVDMAWKFFHEI--EANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRV 305
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P YAYN +I G F++A LLE+ G P V Y +++ K G
Sbjct: 306 PCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKG--SIPSVIAYNCILTCLRKMG 357
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V + L+EM +G T T +I L + ++EA F K R
Sbjct: 597 FCKCGKVNKAYQLLEEMKTKGFEP--TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIE 654
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+V Y+ +I+ +VG ++A +LE++ G P++YT+ L+ + K
Sbjct: 655 LNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGL--TPNLYTWNSLLDALVK 704
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
A F +K R PD +Y+++I+ L + G N+ L M+ G C D Y I+I
Sbjct: 538 AMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQG--CVLDTRAYNIVID 595
Query: 250 SYCKYG 255
+CK G
Sbjct: 596 GFCKCG 601
>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
Length = 818
Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI+ L G + +ALA F M C P V Y+++++A C+ + +A LL+
Sbjct: 251 TFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLD 310
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M G C PD+ TY +LI++ C G
Sbjct: 311 EMRAKG--CEPDIVTYNVLINAMCNEG 335
Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
+M RG V T ++ L+ +E +A+A M+ C PD+ YNV+INA+C
Sbjct: 276 DMLHRGCSPSVVTYSI--LLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCN 333
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
G+ ++A +L LP C PD TYT ++ S C
Sbjct: 334 EGDVDEALNILSN--LPSHGCKPDAVTYTPVLKSLC 367
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 153 DFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + MS G ++VT S++ + L + G V++A+ R+K + C+PD AY V+
Sbjct: 412 EVVDHMSEHGCVADIVTYSSI---LDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVL 468
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC + +A L+ +M CPPD T+ +++S C+ G+
Sbjct: 469 KGLCSTEQWERAEELMAEMLCSD--CPPDEVTFNTVVASLCQKGL 511
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 149 KGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
KGL D +++MS G + T C+I L E +++A+ ++ C+PD+
Sbjct: 509 KGLVDRAIRVVEQMSENGCSPDIVT--YNCIIDGLCNESCIDDAMELLSDLQSCGCKPDI 566
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
+N ++ LC V + A L+ M CPPD T+ +I+S C+ G+ T
Sbjct: 567 VTFNTLLKGLCGVDRWEDAEQLMANMMRS--NCPPDELTFNTVITSLCQKGLLT 618
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+ TCKE G A L EM +G + T V LI + EG V+EAL
Sbjct: 294 DATCKESGYRQAMA--------LLDEMRAKGCEPDIVTYNV--LINAMCNEGDVDEALNI 343
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+ C+PD Y V+ +LC + + LL +M C PD T+ +++S
Sbjct: 344 LSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMT--SNNCAPDEVTFNTIVTSL 401
Query: 252 CKYGM 256
C+ G+
Sbjct: 402 CQQGL 406
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T ++ L ++GLV+ A+ +M + C PD+ YN +I+ LC + A LL +
Sbjct: 498 TFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDL 557
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
+ G C PD+ T+ L+ C
Sbjct: 558 QSCG--CKPDIVTFNTLLKGLC 577
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T ++ L ++GLV+ A+ M + C D+ Y+ +++ LC VG + A LL +
Sbjct: 393 TFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSR- 451
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
L + C PD YT ++ C
Sbjct: 452 -LKSYGCKPDTIAYTTVLKGLC 472
Score = 45.1 bits (105), Expect = 0.027, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L ++GL+ +A+ T M + C P+ Y++V++AL + G A LL M
Sbjct: 603 TFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGM 662
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
PD+ TY +IS+ K G
Sbjct: 663 T----NGTPDLITYNTVISNLTKAG 683
Score = 44.7 bits (104), Expect = 0.044, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C PD +N V+ +LC+ G ++A ++EQM G C PD+ TY +I C
Sbjct: 492 CPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENG--CSPDIVTYNCIIDGLC 542
Score = 44.3 bits (103), Expect = 0.057, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LIK L +G V++A F + V YN ++N CR G AR L+ M
Sbjct: 193 LIKRLCSDGRVSDAERVFAALGP---SATVVTYNTMVNGYCRAGRIEDARRLINGMPF-- 247
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PPD +T+ LI + C G
Sbjct: 248 ---PPDTFTFNPLIRALCVRG 265
Score = 40.4 bits (93), Expect = 0.74, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD + +N +I ALC G A + + M G C P V TY+IL+ + CK
Sbjct: 249 PDTFTFNPLIRALCVRGRIPDALAVFDDMLHRG--CSPSVVTYSILLDATCK 298
Score = 38.5 bits (88), Expect = 2.9, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M + C PD +N VI +LC+ G +A L+ M G C P+ TY+I++ + K
Sbjct: 592 MMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENG--CVPNSSTYSIVVDALLKA 649
Query: 255 G 255
G
Sbjct: 650 G 650
>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
mitochondrial [Vitis vinifera]
Length = 876
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
L T T C + LG++ +NEA A +M ++ P V + ++I CR G +
Sbjct: 519 LTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLK 578
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+LE+M+ G C P+VYTYTI+I+ C G
Sbjct: 579 MLERMKQAG--CSPNVYTYTIIINGLCNNG 606
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T T T LIK + G+ ++A+ M C P+V+ Y ++I+ LCR G +A +
Sbjct: 276 STRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVF 335
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M G P + T+ LI+ YCK G
Sbjct: 336 RKMLKHGL--CPGIITFNALINGYCKEG 361
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L +M + G V T T+ LI+ G +L RMKQ C P+VY Y ++IN
Sbjct: 544 MLGKMMKYGLVPSVVTHTI--LIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIING 601
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC G +A +L M F P+ +TY +L+ ++ K G
Sbjct: 602 LCNNGRVEEAETILFSM--SSFGVSPNHFTYAVLVKAHVKAG 641
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 185 VNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
+ EA F +M K+ CRP+ Y+++I+ LC G +A L ++M G C P T
Sbjct: 222 LGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKG--CQPSTRT 279
Query: 244 YTILISSYCKYGM 256
YT+LI + C GM
Sbjct: 280 YTVLIKAKCDIGM 292
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI +EG V A M++ C+P++ YN ++ LCRV KA LL ++
Sbjct: 349 TFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRV 408
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PD TY IL+ +CK G
Sbjct: 409 VDNGLL--PDRVTYNILVDGFCKEG 431
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG L T L+ +EG +N A F M PD + + +I+ LC++G +
Sbjct: 411 NGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQ 470
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A +L M G D T+T LI +CK G
Sbjct: 471 ANGILGSMVKKGI--SLDEVTFTALIDGHCKIG 501
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L EG + EA F +M + P + +N +IN C+ G A LL M
Sbjct: 314 TYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVM 373
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E C P++ TY L+ C+
Sbjct: 374 EKG--NCKPNIRTYNELMEGLCR 394
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + G + F M + RC + +N ++AL + N+A +L +M
Sbjct: 489 TFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKM 548
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P V T+TILI +C+ G
Sbjct: 549 MKYGL--VPSVVTHTILIEGHCRAG 571
>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 152 WDFLKEMSRRGNG---ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
D L+ M+++G ++V STV I EG +A + F+ M + +PDV YN
Sbjct: 248 LDLLQMMAKQGGACSPDVVAYSTV---IHGFFNEGETGKACSLFHEMTRQGVKPDVVTYN 304
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++I+ALC+ +KA +L QM G + PD TY+ +I Y G
Sbjct: 305 LIIDALCKARAMDKAELVLRQMTTDGAQ--PDTVTYSCMIHGYATLG 349
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
S + NG T LI + G+V++A+ F M+Q PDV Y+ VI+ R+G
Sbjct: 430 SMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMG 489
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A QM G + P+ Y+ +I +C +G
Sbjct: 490 RLTDAMEKFNQMVARGIQ--PNTAVYSSIIQGFCMHG 524
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 23/152 (15%)
Query: 106 QKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG--N 163
Q V GI T Y + + F C G+V A+ + + EM +G
Sbjct: 500 QMVARGIQPNTAVYSSIIQGF--------CMHGGLVKAK--------ELVSEMINKGIPR 543
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
++V S+V I L ++G V +A F RP V +N +I+ C VG +KA
Sbjct: 544 PDIVFFSSV---INSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKA 600
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+L+ ME+ G PD+ TY L+ Y K G
Sbjct: 601 FKILDAMEVVGVE--PDIVTYNTLLDGYFKNG 630
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 171 TVTCLIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T L+K L EA+ +RM + C P+ +Y++V+ ALC +A LL+
Sbjct: 194 TANTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQM 253
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M G C PDV Y+ +I + G
Sbjct: 254 MAKQGGACSPDVVAYSTVIHGFFNEG 279
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L++M+ +G T T +C+I G + EA F MK+ P++ N + +L
Sbjct: 323 LRQMTT--DGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASL 380
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ G +A + M G + PD+++Y L+ Y G
Sbjct: 381 CKHGRSKEAAEFFDSMTAKGHK--PDIFSYCTLLHGYASEG 419
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VTC + K +F M+ +G+ + + L+ EG + +
Sbjct: 369 NIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCT--LLHGYASEGCFADMIG 426
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F MK + + + ++I+A + G + A + +M+ G PDV TY+ +IS+
Sbjct: 427 LFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGV--SPDVVTYSTVIST 484
Query: 251 YCKYGMQT 258
+ + G T
Sbjct: 485 FSRMGRLT 492
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFR 199
+A +K +EM +RG + + VTC + L + G EA F M
Sbjct: 345 YATLGRLKEAAKMFREMKKRG----LIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKG 400
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+PD+++Y +++ G F L M+ G + + +TILI +Y K GM
Sbjct: 401 HKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGI--AANCHVFTILIHAYAKRGM 455
>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
Length = 1010
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 12/179 (6%)
Query: 81 RILKKEAD------NIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVT 134
++LKK D + N+L+ G N + +L + + E + H N+V
Sbjct: 390 KLLKKMGDCGCQPGYVVYNILIGGICG--NEKLPSLDVLELAEKAYGEMLDAHVVLNKVN 447
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
+ + + ++EM +G + TST + +I +L V+ A F
Sbjct: 448 VSNLARCLCGAGKFEKAYSIIREMMSKGF--IPDTSTYSKVIGLLCNASKVDNAFLLFEE 505
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
MK PDV+ Y ++I++ C+VG +AR ++M G C P+V TYT LI +Y K
Sbjct: 506 MKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG--CAPNVVTYTALIHAYLK 562
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
+MS RG G V T + LI L ++ ++ AL RM + C P+V Y +I+ LC+
Sbjct: 696 KMSERGYGPNVYT--YSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
VG ++A L+ ME G C P+V TYT +I + K G
Sbjct: 754 VGKTDEAYRLMSMMEEKG--CHPNVVTYTAMIDGFGKAG 790
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 157 EMSRRGNGELVTTSTV------TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
E++ + GE++ V + L + L G +A + M PD Y+ V
Sbjct: 427 ELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKV 486
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
I LC + A L E+M+ PDV+TYTILI S+CK G+
Sbjct: 487 IGLLCNASKVDNAFLLFEEMK--SNHVVPDVFTYTILIDSFCKVGL 530
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + GL+ +A F M + C P+V Y +I+A + + A L E M
Sbjct: 517 TYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMM 576
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P+V TYT LI +CK G
Sbjct: 577 LSEG--CIPNVVTYTALIDGHCKSG 599
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 14/185 (7%)
Query: 71 GFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFH 130
GF H+T Q+ L++ + + ++V + +NP+ LG+ +F+ W R + H
Sbjct: 111 GFGHKT---QKFLRQFREKLNETLVVDVLSLVKNPE---LGV----KFFIWAGRQIGYGH 160
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+ V G N + FL+E+ R + + + LI+ GL N AL
Sbjct: 161 TGPVYHALLEVLGCGGNDRVPEQFLREI--RDEDKEILGKLLNVLIRKCCRNGLWNVALE 218
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
R+K +P YN ++ + A + +M GF D YT +
Sbjct: 219 ELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFN--MDGYTLGCFVHL 276
Query: 251 YCKYG 255
CK G
Sbjct: 277 LCKAG 281
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L + G +EA M++ C P+V Y +I+ + G +K L+ QM
Sbjct: 745 TEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGA 804
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
G C P+ TY +LI+ C G+
Sbjct: 805 KG--CAPNFVTYRVLINHCCAAGL 826
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+++ Y +++ LC+ +AR LL+ M + G C P+ Y LI +CK G
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEG--CEPNHIVYDALIDGFCKVG 685
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 31/116 (26%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I G+ G V++ L +M C P+ Y V+IN C G + A LL++M
Sbjct: 778 TYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEM 837
Query: 231 E-------LPGFR------------------------CPPDVYTYTILISSYCKYG 255
+ + G+R P + Y ILI S+CK G
Sbjct: 838 KQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAG 893
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + V EA M C P+ Y+ +I+ C+VG ++A+ + +M
Sbjct: 638 TYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKM 697
Query: 231 ELPGFRCPPDVYTYTILIS 249
G+ P+VYTY+ LI
Sbjct: 698 SERGY--GPNVYTYSSLID 714
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
+ T T +I L E L EA+ RM+ C P+V Y +++ R + + +
Sbjct: 297 LDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRI 356
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
L M G C P + LI +YC+ G
Sbjct: 357 LSMMITEG--CYPSRRIFNSLIHAYCRSG 383
>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 539
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L ++GLV+EA M + DVY+YN +I+ C VG F A LL++M + G
Sbjct: 216 VIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRG 275
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ PDVYT+ ILI CK G
Sbjct: 276 -KVYPDVYTFNILIDGLCKLG 295
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
WD ++ M R +G+ T L+ + ++ALA F + + P++ YN+++
Sbjct: 406 WDLVEAM--RASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILL 463
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ LC+ G A+ + + + G C P++ TY I+I CK G
Sbjct: 464 DGLCKSGRLKYAKEIFQLLSAKG--CQPNIRTYNIMIHGLCKEG 505
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L + G +A+ F +MK+ R P++ YN VI+ LC+ G ++A L +M G
Sbjct: 181 IINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENG 240
Query: 235 FRCPPDVYTYTILISSYCKYG 255
DVY+Y +I +C G
Sbjct: 241 IEL--DVYSYNSMIHGFCSVG 259
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDVY +N++I+ LC++G ++A ++ M G++ PD+ +Y L++ YC G
Sbjct: 279 PDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWK--PDIVSYNALMNGYCLSG 330
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM RG T LI L + G V+EA M + +PD+ +YN ++N
Sbjct: 267 LLDEMVVRGK-VYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNG 325
Query: 214 LCRVGNFNKARFLLEQM-ELPGFRCPPDVYTYTILISSYCKYGM 256
C G+ +A+ + ++M E P+V +Y LI+ YCK M
Sbjct: 326 YCLSGSVGEAKQVFDKMVERTAL---PNVISYCTLINGYCKVRM 366
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + +T L+K L +G V EA++ + R D Y +IN LC++G A
Sbjct: 135 GFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDA 194
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ +M+ R P++ Y +I CK G+
Sbjct: 195 IQMFPKMK--KIRVYPNLIMYNTVIDGLCKQGL 225
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
G V EA F +M + P+V +Y +IN C+V ++A LL +M PD
Sbjct: 329 SGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNL--VPDT 386
Query: 242 YTYTILISSYCKYG 255
TY L+ K G
Sbjct: 387 VTYNCLLDGLSKSG 400
>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Brachypodium distachyon]
Length = 757
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G L T+T LI L E + EAL + P+VY +N++INALC+VG+ +
Sbjct: 365 SGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHL 424
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A L E+M+ G C PD TY ILI + C G
Sbjct: 425 AVRLFEEMKSSG--CTPDEVTYNILIDNLCSSG 455
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N ++ D +E++ +G V T + LI L + G + A+ F MK C PD
Sbjct: 385 NQLEEALDLARELTVKGLSPNVYTFNI--LINALCKVGDPHLAVRLFEEMKSSGCTPDEV 442
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN++I+ LC G KA LL++ME+ G CP TY +I CK
Sbjct: 443 TYNILIDNLCSSGKLAKALDLLKEMEVSG--CPQSTVTYNTIIDGLCK 488
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + + L + G V+ AL M Q C PDVY Y+ VIN LC G +A+ ++ QM
Sbjct: 303 TFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQM 362
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
G C PD T+ LI + C
Sbjct: 363 VDSG--CLPDTTTFNTLIVALC 382
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T T L++ EEG + AL RM + C P NV+IN C++G A ++Q
Sbjct: 232 TTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQ 291
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
GF PD T++ ++ C+ G
Sbjct: 292 EIADGFE--PDRVTFSTFVNGLCQNG 315
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + +I L G + EA +M C PD +N +I ALC +A L ++
Sbjct: 338 TYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLAREL 397
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G P+VYT+ ILI++ CK G
Sbjct: 398 TVKGL--SPNVYTFNILINALCKVG 420
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 54/126 (42%), Gaps = 6/126 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + + + N+ D L+ M+ NG V T LI L + AL
Sbjct: 545 NNVTYNSILTHYCKQGNISKAADILQTMT--ANGFEVDVVTYATLINGLCKARRTQAALK 602
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-ELPGFRCPPDVYTYTILIS 249
M+ +P AYN VI +L R N A L +M E+ G PPD +TY I+
Sbjct: 603 LLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGG---PPDAFTYKIVFR 659
Query: 250 SYCKYG 255
C+ G
Sbjct: 660 GLCRGG 665
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ VL E + + + M PDV +N VI+ALCR A +LE+M
Sbjct: 167 LLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMS--S 224
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD T+T L+ + + G
Sbjct: 225 CDVAPDETTFTTLMEGFVEEG 245
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D LKEM G + +T T +I L + + EA F +M + +N +I+
Sbjct: 462 DLLKEMEVSGCPQ--STVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLID 519
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC + A L++QM G + P+ TY +++ YCK G
Sbjct: 520 GLCNAERIDDAAELVDQMISEGLQ--PNNVTYNSILTHYCKQG 560
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L +++A +M +P+ YN ++ C+ GN +KA +L+ M
Sbjct: 513 TFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTM 572
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
GF DV TY LI+ CK
Sbjct: 573 TANGFEV--DVVTYATLINGLCK 593
>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
Length = 996
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 12/179 (6%)
Query: 81 RILKKEAD------NIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVT 134
++LKK D + N+L+ G N + +L + + E + H N+V
Sbjct: 390 KLLKKMGDCGCQPGYVVYNILIGGICG--NEKLPSLDVLELAEKAYGEMLDAHVVLNKVN 447
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
+ + + ++EM +G + TST + +I +L V+ A F
Sbjct: 448 VSNLARCLCGAGKFEKAYSIIREMMSKGF--IPDTSTYSKVIGLLCNASKVDNAFLLFEE 505
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
MK PDV+ Y ++I++ C+VG +AR ++M G C P+V TYT LI +Y K
Sbjct: 506 MKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG--CAPNVVTYTALIHAYLK 562
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
+MS RG G V T + LI L ++ ++ AL RM + C P+V Y +I+ LC+
Sbjct: 696 KMSERGYGPNVYT--YSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
VG ++A L+ ME G C P+V TYT +I + K G
Sbjct: 754 VGKTDEAYRLMSMMEEKG--CHPNVVTYTAMIDGFGKAG 790
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 157 EMSRRGNGELVTTSTV------TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
E++ + GE++ V + L + L G +A + M PD Y+ V
Sbjct: 427 ELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKV 486
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
I LC + A L E+M+ PDV+TYTILI S+CK G+
Sbjct: 487 IGLLCNASKVDNAFLLFEEMK--SNHVVPDVFTYTILIDSFCKVGL 530
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + GL+ +A F M + C P+V Y +I+A + + A L E M
Sbjct: 517 TYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMM 576
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P+V TYT LI +CK G
Sbjct: 577 LSEG--CIPNVVTYTALIDGHCKSG 599
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 14/185 (7%)
Query: 71 GFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFH 130
GF H+T Q+ L++ + + ++V + +NP+ LG+ +F+ W R + H
Sbjct: 111 GFGHKT---QKFLRQFREKLNETLVVDVLSLVKNPE---LGV----KFFIWAGRQIGYGH 160
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+ V G N + FL+E+ R + + + LI+ GL N AL
Sbjct: 161 TGPVYHALLEVLGCGGNDRVPEQFLREI--RDEDKEILGKLLNVLIRKCCRNGLWNVALE 218
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
R+K +P YN ++ + A + +M GF D YT +
Sbjct: 219 ELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFN--MDGYTLGCFVHL 276
Query: 251 YCKYG 255
CK G
Sbjct: 277 LCKAG 281
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
++ T + L KV G +EA M++ C P+V Y +I+ + G +K
Sbjct: 742 IIYTEMIDGLCKV----GKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLE 797
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L+ QM G C P+ TY +LI+ C G+
Sbjct: 798 LMRQMGAKG--CAPNFVTYRVLINHCCAAGL 826
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+++ Y +++ LC+ +AR LL+ M + G C P+ Y LI +CK G
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEG--CEPNHIVYDALIDGFCKVG 685
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + V EA M C P+ Y+ +I+ C+VG ++A+ + +M
Sbjct: 638 TYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKM 697
Query: 231 ELPGFRCPPDVYTYTILIS 249
G+ P+VYTY+ LI
Sbjct: 698 SERGY--GPNVYTYSSLID 714
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 31/116 (26%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I G+ G V++ L +M C P+ Y V+IN C G + A LL++M
Sbjct: 778 TYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEM 837
Query: 231 E-------LPGFR------------------------CPPDVYTYTILISSYCKYG 255
+ + G+R P + Y ILI S+CK G
Sbjct: 838 KQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAG 893
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
+ T T +I L E L EA+ RM+ C P+V Y +++ R + + +
Sbjct: 297 LDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRI 356
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
L M G C P + LI +YC+ G
Sbjct: 357 LSMMITEG--CYPSRRIFNSLIHAYCRSG 383
>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
Length = 333
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE ++ A G L EM RG T T LI EG +++AL F
Sbjct: 62 CKERRLLDAEG--------LLNEMRERGVPP--DLCTFTTLIHGYCIEGKLDKALQLFDT 111
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M R RPD+ YN +I+ +CR G+ +KA L + M P+ TY+ILI S+C+
Sbjct: 112 MLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMH--SREIFPNHVTYSILIDSHCEK 169
Query: 255 G 255
G
Sbjct: 170 G 170
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+L+EM G LV + T +I GL+++AL M C PDV YN ++N
Sbjct: 3 YLREMRCFG---LVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLN 59
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ A LL +M G PPD+ T+T LI YC G
Sbjct: 60 GLCKERRLLDAEGLLNEMRERGV--PPDLCTFTTLIHGYCIEG 100
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFL-KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ R NV FL K M + + +L+T +T LI +E +++A M++ +
Sbjct: 201 YCRSGNVSKGQKFLQKMMVNKVSPDLITYNT---LIHGYIKEDKMHDAFKLLNMMEKEKV 257
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PDV YN++IN GN +A ++ E+M G PD YTY +I+ + G
Sbjct: 258 QPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIE--PDRYTYMSMINGHVTAG 310
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI E+G V +A M P++ YN +I CR GN +K + L++M
Sbjct: 158 TYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKM 217
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ + PD+ TY LI Y K
Sbjct: 218 MVN--KVSPDLITYNTLIHGYIK 238
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 5/144 (3%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++KA + + + F N VT + V+ + FL EM +G L T
Sbjct: 137 LDKANDLWDDMHSR-EIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKG--ILPNIMT 193
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+IK G V++ +M + PD+ YN +I+ + + A LL ME
Sbjct: 194 YNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMME 253
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
+ PDV TY +LI+ + +G
Sbjct: 254 KE--KVQPDVVTYNMLINGFSVHG 275
>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
Length = 544
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 7/109 (6%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
N ++ +F KEM + +G + L+ L + G + EA A F M C PD+
Sbjct: 154 ANRLEQAMEFFKEM--KASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT---CSPDI 208
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YNV+++ C++G +A+ L++++ G+ P+V+TY+I+I+ YCK
Sbjct: 209 MTYNVLMDGYCKIGQTYEAQSLMKEILKAGYE--PNVFTYSIIINCYCK 255
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
G G T T LI+ + ++EA+ F M+ +C P+V Y+++I+ LC+V
Sbjct: 341 EGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEG-KCAPNVITYSILIDGLCKVRRM 399
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A LE M+ G+ P V TY LI+ +CK G
Sbjct: 400 KEAAKTLEDMKAHGY--TPTVVTYGGLINGFCKCG 432
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ +G T T LI + G + AL F +MK C P+ +N +I+ LC+
Sbjct: 410 KAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERA 469
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
N LL M G C PDV TY LIS C
Sbjct: 470 NDGLRLLCHMHAEG--CKPDVITYNCLISGLC 499
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG----LVNEALATFYRMKQ 197
F V+ L++M R + V T T ++K L E + +A+ F MK
Sbjct: 112 FFMAGRVRDALAHLQDM--RKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKA 169
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ +Y+++++AL G +A L M C PD+ TY +L+ YCK G
Sbjct: 170 SGVEPDLESYHILLSALSDSGRMAEAHALFSAM-----TCSPDIMTYNVLMDGYCKIG 222
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 39/147 (26%)
Query: 142 FARGNNVKGLWD-FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + + V+ W+ F+K + VT +T LI + G++ +A+ F M++ C
Sbjct: 253 YCKLDKVEEAWEVFMKMIESNCVPNAVTFNT---LIAGFCKAGMLEDAIKLFAEMEKIGC 309
Query: 201 RPDVYAYNVVINALCR--------VGNFNK----------------------ARFLLEQM 230
+ + YN +I++LC+ V FNK AR L E M
Sbjct: 310 KATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAM 369
Query: 231 ----ELPGFRCPPDVYTYTILISSYCK 253
E+ G +C P+V TY+ILI CK
Sbjct: 370 QYFDEMEG-KCAPNVITYSILIDGLCK 395
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 7/111 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + +K F ++M G T LI L + N+ L M C+
Sbjct: 428 FCKCGELKSALLFFEKMKLAGCAP--NTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCK 485
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
PDV YN +I+ LC A+ L + G C P+V T+ LI C
Sbjct: 486 PDVITYNCLISGLCSANRVEDAQRLFD-----GMACAPNVTTFNFLIRGLC 531
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L + + EA T MK P V Y +IN C+ G A E+M
Sbjct: 385 TYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKM 444
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+L G C P+ + LI CK
Sbjct: 445 KLAG--CAPNTVIFNTLIDGLCK 465
>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
Length = 883
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
L T T C + LG++ +NEA A +M ++ P V + ++I CR G +
Sbjct: 542 LTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLK 601
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+LE+M+ G C P+VYTYTI+I+ C G
Sbjct: 602 MLERMKQAG--CSPNVYTYTIIINGLCNNG 629
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T T T LIK + G+ ++A+ M C P+V+ Y ++I+ LCR G +A +
Sbjct: 299 STRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVF 358
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M G P + T+ LI+ YCK G
Sbjct: 359 RKMLKHGL--CPGIITFNALINGYCKEG 384
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L +M + G V T T+ LI+ G +L RMKQ C P+VY Y ++IN
Sbjct: 567 MLGKMMKYGLVPSVVTHTI--LIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIING 624
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC G +A +L M F P+ +TY +L+ ++ K G
Sbjct: 625 LCNNGRVEEAETILFSM--SSFGVSPNHFTYAVLVKAHVKAG 664
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 185 VNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
+ EA F +M K+ CRP+ Y+++I+ LC G +A L ++M G C P T
Sbjct: 245 LGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKG--CQPSTRT 302
Query: 244 YTILISSYCKYGM 256
YT+LI + C GM
Sbjct: 303 YTVLIKAKCDIGM 315
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI +EG V A M++ C+P++ YN ++ LCRV KA LL ++
Sbjct: 372 TFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRV 431
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PD TY IL+ +CK G
Sbjct: 432 VDNGLL--PDRVTYNILVDGFCKEG 454
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG L T L+ +EG +N A F M PD + + +I+ LC++G +
Sbjct: 434 NGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQ 493
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A +L M G D T+T LI +CK G
Sbjct: 494 ANGILGSMVKKGI--SLDEVTFTALIDGHCKIG 524
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L EG + EA F +M + P + +N +IN C+ G A LL M
Sbjct: 337 TYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVM 396
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E C P++ TY L+ C+
Sbjct: 397 EKG--NCKPNIRTYNELMEGLCR 417
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + G + F M + RC + +N ++AL + N+A +L +M
Sbjct: 512 TFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKM 571
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P V T+TILI +C+ G
Sbjct: 572 MKYGL--VPSVVTHTILIEGHCRAG 594
>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
Length = 581
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 10/144 (6%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++KA+EF VE + + K M + RG + F + + R V +
Sbjct: 201 LSKASEFGCRVEAYAYN-------KLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFN 253
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
V +IK + G V +AL RM +F C PD +N++++ LCR ++ +L +++
Sbjct: 254 V--VIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQ 311
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
G C P+V T+T +IS YCK G
Sbjct: 312 RDGV-CMPNVVTFTSVISGYCKAG 334
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIV--FARGNNVKGLWDFLKEMSRRGNGELVTT 169
+ KA E VER F + T IV R N V + L+ + R G +
Sbjct: 265 VQKALEL---VERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVC-MPNV 320
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T T +I + G + +A+A + M P+ YNV+IN +VG+ A + +Q
Sbjct: 321 VTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQ 380
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M RCPPDV T++ LI YC+ G
Sbjct: 381 MT--RLRCPPDVVTFSSLIDGYCRCG 404
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
+G + T T LI G+ G + A+ + +M + RC PDV ++ +I+ CR G +
Sbjct: 348 ASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLD 407
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A + M R P+VYT++I+I S CK
Sbjct: 408 DALRIWSDMA--QHRIQPNVYTFSIIIHSLCK 437
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV----YAYNVVINALCRVGNFNKARFL 226
T + +I L ++ +EA+ + + RPD+ + YN VI+ LC+ G ++A +
Sbjct: 427 TFSIIIHSLCKQNRSDEAIRL---LNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLI 483
Query: 227 LEQMELPGFRCPPDVYTYTILISSYC 252
+ ME G C PD YTYTILI YC
Sbjct: 484 RKGMEEKG--CRPDKYTYTILIIGYC 507
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I VL + G V+EA M++ CRPD Y Y ++I C ++A +M G
Sbjct: 467 VIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAG 526
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
C PD T IS K GM
Sbjct: 527 --CSPDSITVNCFISCLLKAGM 546
>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 597
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 151 LWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
+W+ EM +G V T V LI VL +EG V EA M Q P++
Sbjct: 284 MWEEAKRLFNEMVNQGVQPNVVTFNV--LIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLT 341
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN +I C VG+ N AR L M P C PDV YT+LI+ YCK
Sbjct: 342 YNSLIEGFCLVGDLNSARELFVSM--PSKGCEPDVICYTVLINGYCK 386
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
CLI L + G + A F ++ Q +PDV YN++I+ CR G KA L ++ME
Sbjct: 484 CLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKN 543
Query: 234 GFRCPPDVYTYTILISSY 251
G C PD TY LI +
Sbjct: 544 G--CTPDKITYATLIRGF 559
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LIK L E +++A F RM++ C P+ Y ++ LCR GN + A L ++M
Sbjct: 168 TYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEM 227
Query: 231 ----ELPGFRCPPDVYTYTILISSYCK 253
L G P V +Y+I+I + CK
Sbjct: 228 LNDSSLYGINFKPVVISYSIIIDALCK 254
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L + G + EA+ F ++K + + D+ +N +I+ LC+ G A L E+ LP
Sbjct: 454 LCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEK--LPQEELQ 511
Query: 239 PDVYTYTILISSYCKYG 255
PDV TY I+I +C+ G
Sbjct: 512 PDVVTYNIMIHEFCRGG 528
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+V CKE ++ A+ D L+ M +RG + T LI+ G +N A
Sbjct: 312 DVLCKEGKVIEAK--------DLLEVMIQRG--IVPNLLTYNSLIEGFCLVGDLNSAREL 361
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F M C PDV Y V+IN C+ +A L M G R PDV TY L++
Sbjct: 362 FVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKR--PDVKTYGALLTGL 419
Query: 252 CKYG 255
+ G
Sbjct: 420 FQGG 423
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI + V EA+ + M Q RPDV Y ++ L + G A+ L M++
Sbjct: 378 TVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKV 437
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G P D+Y Y I ++ CK G
Sbjct: 438 YGI--PGDLYIYGIFLNGLCKNG 458
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+ L+ L V E LA + + PD+ Y +I LC +KA L +M
Sbjct: 133 TLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRM 192
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G C P+ TY L+ C+ G
Sbjct: 193 QKLG--CTPNAITYGTLMKGLCRTG 215
>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
Length = 683
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
EG + A + M C PDV+ Y+++++ LC++G F A +L++ME G C P++
Sbjct: 326 EGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKG--CAPNI 383
Query: 242 YTYTILISSYCKYGM 256
TY+ L+ S+C+ GM
Sbjct: 384 VTYSTLLHSFCRNGM 398
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G V +AL M PD+ YN +IN LC+VG + A LLE+ LP
Sbjct: 564 LINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEK--LPN 621
Query: 235 FRCPPDVYTYTILISSYCK 253
PD+ TY ILIS +CK
Sbjct: 622 ENVHPDIVTYNILISWHCK 640
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LIK L +EG V+ ++A M +P+ ++YN++IN LC+ G A L ++M G
Sbjct: 529 LIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQG 588
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD+ TY LI+ CK G
Sbjct: 589 L--TPDIVTYNTLINGLCKVG 607
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T LI L G E L M C+ DV +YN +I ALC+ GN +++
Sbjct: 483 GVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRS 542
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LLE+M G + P+ ++Y +LI+ CK G
Sbjct: 543 MALLEEMVTKGIK--PNNFSYNMLINELCKAG 572
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
TT T + L G +ALA M + C PD Y VI+AL G +A LL
Sbjct: 176 TTFTFGVAARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLL 235
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++M L G C DV T+ L+ C G
Sbjct: 236 DEMLLMG--CAADVNTFNDLVLGLCGLG 261
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 154 FLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L EM +G +VT ST L+ G+ ++A A +M + YN +I
Sbjct: 370 MLDEMEEKGCAPNIVTYST---LLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIY 426
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
ALC+ G ++A L+++M+ G C PD+ TY +I C
Sbjct: 427 ALCKDGKLDQATRLVQEMKSQG--CKPDICTYNTMIYHLC 464
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 154 FLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L+ M+R G + V TV I L +G V EA M C DV +N ++
Sbjct: 199 LLRGMARHGCVPDAVLYQTV---IHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVL 255
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC +G +A L+++M G C P V TY L+ C+
Sbjct: 256 GLCGLGRVREAARLVDRMMTQG--CMPSVVTYGFLLQGLCR 294
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ L + G A+ M++ C P++ Y+ ++++ CR G ++ AR +L+QM
Sbjct: 350 TYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQM 409
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF + Y +I + CK G
Sbjct: 410 LAKGF--SMNSQGYNGIIYALCKDG 432
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+AL + RM + R P + + V ALCR+G A LL M G C PD Y
Sbjct: 160 DALLLYRRMLRDRVPPTTFTFGVAARALCRLGRAGDALALLRGMARHG--CVPDAVLYQT 217
Query: 247 LISSYCKYG 255
+I + G
Sbjct: 218 VIHALVAQG 226
>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG V + LI LG+ G V+EA F M + C PD Y YN +I+AL + G
Sbjct: 369 RVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKT 428
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A ++ME G C VYTYTI+I+
Sbjct: 429 DEALAFFKRMEDEG--CDQTVYTYTIMING 456
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Query: 115 ATEFYHWVERFFHFFHN-EVTCKEMGIVFARGN--NVKGLWDFLKEMSRRGNGELVTTST 171
A +F+ W + + HN + + ++ G+ NVK ++ RG G L+ S
Sbjct: 80 ALKFFTWAGKQKKYTHNLQCYVSSIDVLAINGDLDNVKSVF-----CKFRGMGFLMNVSA 134
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
LIK G G+V E L + MK+ P ++ YN ++N L A +LE ME
Sbjct: 135 ANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGLVNSVFIESAERVLEVME 194
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
+ PDV TY +I YC+ G
Sbjct: 195 --NGKIGPDVVTYNTMIKGYCQVG 216
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + + +I L +EG E A F +M Q C+ +V Y +I++ + GN +
Sbjct: 266 NGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGE 325
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A L E+M+ G PDV TY ++++ CK G
Sbjct: 326 AMLLFERMKKEGLE--PDVVTYGVVVNCMCKSG 356
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 58/151 (38%), Gaps = 36/151 (23%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+G + G V+G F K + + G V + T LI + G + EA+ F RMK+
Sbjct: 279 IGGLCKEGKCVEGYAVFEKMIQK---GCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKK 335
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR--------------------- 236
PDV Y VV+N +C+ G ++A LE + G
Sbjct: 336 EGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHE 395
Query: 237 ------------CPPDVYTYTILISSYCKYG 255
CPPD Y Y LI + K G
Sbjct: 396 AEKLFEEMVKKGCPPDSYCYNALIDALAKCG 426
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +IK + G +A F M+ PD Y +I A G+F+ L +M
Sbjct: 204 TYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLYHEM 263
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G PP + Y+++I CK G
Sbjct: 264 DENGLEIPP--HAYSLVIGGLCKEG 286
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI+ EG + L+ ++ M + +AY++VI LC+ G + + E+M
Sbjct: 239 TYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKM 298
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C +V YT LI S K G
Sbjct: 299 IQKG--CKVNVAIYTALIDSNAKCG 321
>gi|414587959|tpg|DAA38530.1| TPA: hypothetical protein ZEAMMB73_367044 [Zea mays]
Length = 537
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 150 GLWDFLKEMSRR--GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G+WD + M + G + + +I L ++G +++A MK C+PD+ Y
Sbjct: 266 GMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTY 325
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N +I ALC+ GN + + LLE+M G + P+ ++Y +LI+ CK G
Sbjct: 326 NGLIKALCKEGNVDWSMALLEEMVTKGIK--PNNFSYNMLINELCKAG 371
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
++ T CL+ EG + + M C DV+ Y+++++ LC++G F
Sbjct: 184 MLNTVICGCLM-----EGKLARVTKLYEMMGSKGCPSDVHTYSILMHGLCKLGRFGSGVR 238
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+L++ME C P++ TY+ L+ S+C+ GM
Sbjct: 239 MLDKMEENS--CAPNIMTYSTLLHSFCRNGM 267
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
TT T + + L G +ALA M + C PD Y +VI+AL G +A LL
Sbjct: 45 TTFTFGVVARALCRLGRAGDALARLRGMARHGCVPDAVLYQIVIHALVVQGRVAEATMLL 104
Query: 228 EQMELPGFRCPPDVYTYTILISSYC 252
++M L G C DV T+ L+ C
Sbjct: 105 DEMLLMG--CAADVNTFNDLVLRLC 127
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 33/118 (27%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ L + G + +M++ C P++ Y+ ++++ CR G ++ AR +L+QM
Sbjct: 219 TYSILMHGLCKLGRFGSGVRMLDKMEENSCAPNIMTYSTLLHSFCRNGMWDDARAMLDQM 278
Query: 231 ELPGFR---------------------------------CPPDVYTYTILISSYCKYG 255
GF C PD+ TY LI + CK G
Sbjct: 279 LAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNGLIKALCKEG 336
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN--------FNKARFL 226
LIK L +EG V+ ++A M +P+ ++YN++IN LC+ GN FN +
Sbjct: 328 LIKALCKEGNVDWSMALLEEMVTKGIKPNNFSYNMLINELCKAGNVIIECSGLFNTPVRI 387
Query: 227 LEQMELPGFRC 237
LP F C
Sbjct: 388 GASFTLPWFYC 398
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+AL + RM + P + + VV ALCR+G A L M G C PD Y I
Sbjct: 29 DALLLYRRMLRDHVPPTTFTFGVVARALCRLGRAGDALARLRGMARHG--CVPDAVLYQI 86
Query: 247 LISS 250
+I +
Sbjct: 87 VIHA 90
>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 61/106 (57%), Gaps = 7/106 (6%)
Query: 150 GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
G+ D + E+ G + T + ++ L++ L +G V +A R+K+ P ++ YN
Sbjct: 317 GVMDEMIEL-----GFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNA 371
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+IN+LC+ G F++A L ++M G C DV TY+ILI S+C+ G
Sbjct: 372 LINSLCKDGKFDEAELLFKEMGEKGL-CANDV-TYSILIDSFCRRG 415
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
KEM +G T + LI G ++ A+ +M + VY YN +IN
Sbjct: 388 LFKEMGEKG--LCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLING 445
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C++GN + A ++M G + P V +YT LIS YC G
Sbjct: 446 HCKLGNLSAAVSFFDEMIDKGLK--PTVVSYTSLISGYCNKG 485
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 176 IKVLGE--EGL-----VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
++ LGE GL V+ L F + RPD+Y Y VI + C + NF KA+ +++
Sbjct: 193 VRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQ 252
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
+ME +V Y +LI CK
Sbjct: 253 RMESSDL----NVVVYNVLIHGLCK 273
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLV 185
HF NE+ + + + ++ +EM +RG + +LV + LI +E
Sbjct: 606 HFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAV---LIDGTIKEQDT 662
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+ M R RPD Y +I+ + G+ KA + + M G C P++ TYT
Sbjct: 663 SAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEG--CTPNIVTYT 720
Query: 246 ILISSYCKYGM 256
LI+ CK G+
Sbjct: 721 TLINELCKAGL 731
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 175 LIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
LI L ++G +EA F M ++ C DV Y+++I++ CR G + A L +M +
Sbjct: 372 LINSLCKDGKFDEAELLFKEMGEKGLCANDV-TYSILIDSFCRRGKLDTAIHFLGKMIMA 430
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G + VY Y LI+ +CK G
Sbjct: 431 GIKIT--VYPYNSLINGHCKLG 450
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
N+ F EM +G T + T LI +G ++EA ++ M P+ Y
Sbjct: 451 NLSAAVSFFDEMIDKGLKP--TVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYT 508
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +I+AL R A L ++M P+ TY ++I +CK G
Sbjct: 509 FTTLISALFRANRMTDAFRLFDEMLEQNMM--PNEVTYNVMIEGHCKEG 555
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 16/137 (11%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN-------------GELVTTSTVTCLIKV 178
E+ KEM + + N+V FL ++R G+ G L T + L++
Sbjct: 736 ELLWKEMLVSNSTPNHVTYCC-FLDHLAREGSMEKAVQLHNDMLKGLLANTVSYNILVRG 794
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
+ G V EA M PD Y+ +I CR GN + A + M G +
Sbjct: 795 FCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLK-- 852
Query: 239 PDVYTYTILISSYCKYG 255
PD Y LI C G
Sbjct: 853 PDTLAYNFLIYGCCIAG 869
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I + G V +A + M C P++ Y +IN LC+ G +KA L ++M +
Sbjct: 685 TSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLV 744
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
P+ TY + + G
Sbjct: 745 S--NSTPNHVTYCCFLDHLAREG 765
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I+ +EG +A +M Q PD Y Y +I++LC G +A+ ++ +
Sbjct: 543 TYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDL 602
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
F+ + Y+ L+ YCK G
Sbjct: 603 HREHFKL--NEMCYSALLHGYCKEG 625
>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Vitis vinifera]
Length = 1045
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 12/179 (6%)
Query: 81 RILKKEAD------NIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVT 134
++LKK D + N+L+ G N + +L + + E + H N+V
Sbjct: 390 KLLKKMGDCGCQPGYVVYNILIGGICG--NEKLPSLDVLELAEKAYGEMLDAHVVLNKVN 447
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
+ + + ++EM +G + TST + +I +L V+ A F
Sbjct: 448 VSNLARCLCGAGKFEKAYSIIREMMSKGF--IPDTSTYSKVIGLLCNASKVDNAFLLFEE 505
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
MK PDV+ Y ++I++ C+VG +AR ++M G C P+V TYT LI +Y K
Sbjct: 506 MKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG--CAPNVVTYTALIHAYLK 562
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
+MS RG G V T + LI L ++ ++ AL RM + C P+V Y +I+ LC+
Sbjct: 696 KMSERGYGPNVYT--YSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
VG ++A L+ ME G C P+V TYT +I + K G
Sbjct: 754 VGKTDEAYRLMSMMEEKG--CHPNVVTYTAMIDGFGKAG 790
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 157 EMSRRGNGELVTTSTV------TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
E++ + GE++ V + L + L G +A + M PD Y+ V
Sbjct: 427 ELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKV 486
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
I LC + A L E+M+ PDV+TYTILI S+CK G+
Sbjct: 487 IGLLCNASKVDNAFLLFEEMK--SNHVVPDVFTYTILIDSFCKVGL 530
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + GL+ +A F M + C P+V Y +I+A + + A L E M
Sbjct: 517 TYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMM 576
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P+V TYT LI +CK G
Sbjct: 577 LSEG--CIPNVVTYTALIDGHCKSG 599
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 14/185 (7%)
Query: 71 GFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFH 130
GF H+T Q+ L++ + + ++V + +NP+ LG+ +F+ W R + H
Sbjct: 111 GFGHKT---QKFLRQFREKLNETLVVDVLSLVKNPE---LGV----KFFIWAGRQIGYGH 160
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+ V G N + FL+E+ R + + + LI+ GL N AL
Sbjct: 161 TGPVYHALLEVLGCGGNDRVPEQFLREI--RDEDKEILGKLLNVLIRKCCRNGLWNVALE 218
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
R+K +P YN ++ + A + +M GF D YT +
Sbjct: 219 ELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFN--MDGYTLGCFVHL 276
Query: 251 YCKYG 255
CK G
Sbjct: 277 LCKAG 281
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
++ T + L KV G +EA M++ C P+V Y +I+ + G +K
Sbjct: 742 IIYTEMIDGLCKV----GKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLE 797
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L+ QM G C P+ TY +LI+ C G+
Sbjct: 798 LMRQMGAKG--CAPNFVTYRVLINHCCAAGL 826
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+++ Y +++ LC+ +AR LL+ M + G C P+ Y LI +CK G
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEG--CEPNHIVYDALIDGFCKVG 685
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 31/116 (26%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I G+ G V++ L +M C P+ Y V+IN C G + A LL++M
Sbjct: 778 TYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEM 837
Query: 231 E-------LPGFR------------------------CPPDVYTYTILISSYCKYG 255
+ + G+R P + Y ILI S+CK G
Sbjct: 838 KQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAG 893
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + V EA M C P+ Y+ +I+ C+VG ++A+ + +M
Sbjct: 638 TYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKM 697
Query: 231 ELPGFRCPPDVYTYTILIS 249
G+ P+VYTY+ LI
Sbjct: 698 SERGY--GPNVYTYSSLID 714
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
+ T T +I L E L EA+ RM+ C P+V Y +++ R + + +
Sbjct: 297 LDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRI 356
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
L M G C P + LI +YC+ G
Sbjct: 357 LSMMITEG--CYPSRRIFNSLIHAYCRSG 383
>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
DF ++M G G T T +I + +EG + A + F +MK+ PD+ YN +I+
Sbjct: 118 DFFRDMV--GAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLID 175
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
++G +++ L E+M+ G C PDV TY LI+S+CK+
Sbjct: 176 GYGKIGLLDESVCLFEEMKFMG--CEPDVITYNALINSFCKF 215
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 12/122 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE ++ AR L++ +K+M ++VT +T LI G+ GL++E++ F
Sbjct: 143 CKEGDMLTARS-----LFEQMKKMGL--TPDIVTYNT---LIDGYGKIGLLDESVCLFEE 192
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
MK C PDV YN +IN+ C+ +A +M+ + P+V +Y+ LI + CK
Sbjct: 193 MKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLK--PNVISYSTLIDALCKE 250
Query: 255 GM 256
GM
Sbjct: 251 GM 252
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M F GN + + + L+EM R G VT T LI L + GLV EA+ F RM
Sbjct: 419 MDAYFKAGNRTEAI-NLLEEM--RDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPD 475
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P+V Y +I+ LC+ A+ L ++M+ PD YT +I K+G
Sbjct: 476 HDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNM--IPDKIAYTAMIDGNLKHG 531
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 152 WDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
++F +EM + +++ ST LI L +EG++ A+ F M + P+ + Y+ +
Sbjct: 222 FEFFREMKDKDLKPNVISYST---LIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSL 278
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
I+A C+ GN +A L ++M ++ TYT L+ C+ GM
Sbjct: 279 IDANCKAGNLGEAFMLADEMLQE--HVDLNIVTYTTLLDGLCEEGM 322
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L VL E G++ A F RM +FR P + N ++ L + G + +R M G
Sbjct: 68 LFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAG 127
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P V+TY I+I CK G
Sbjct: 128 I--APTVFTYNIMIGHVCKEG 146
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ L EEG++NEA F M + P++ AY +I+ +V + +KA L +M
Sbjct: 309 TYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEM 368
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
+ PD+ + ++ C
Sbjct: 369 REKDIK--PDILLWGTIVWGLC 388
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+ F M++ +PD+ + ++ LC + + ++ +M+ G P + Y
Sbjct: 358 MDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVI--Y 415
Query: 245 TILISSYCKYGMQT 258
T L+ +Y K G +T
Sbjct: 416 TTLMDAYFKAGNRT 429
>gi|357142780|ref|XP_003572691.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial-like [Brachypodium distachyon]
Length = 501
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 43/196 (21%)
Query: 89 NIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNV 148
NI + +L + + + K LG+ + W + ++ H C M + + +
Sbjct: 84 NIVDGLL----SKFGDDWKSALGL------FQWAQSSGNYKHTAYACSRMIDLLGKMRQI 133
Query: 149 KGLWDFLKEMSRRG--NGELVTTS-----------TVTCLIKVLGEEGL------VNEAL 189
+WD L +M RG E TS L LG+ GL +N L
Sbjct: 134 DQMWDLLSDMHCRGLVTVEAAATSIRRLAGARRWKDAVLLFDKLGDMGLERNTETMNVLL 193
Query: 190 ATFYRMKQFRC------------RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
+ K+ +PD Y +N+ ++ C ++A + +E+M+ GF
Sbjct: 194 DALCKEKKVEVARKVFLVLSPHIQPDAYTFNIFVHGWCSARRIDEAMWTIEEMKAQGF-- 251
Query: 238 PPDVYTYTILISSYCK 253
PP V TYT ++ +YCK
Sbjct: 252 PPSVITYTTVLEAYCK 267
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + +N + +++ L MS G V T T+ ++ L + + EAL+ +RMK C
Sbjct: 264 AYCKQHNFRMVYEILDSMSSEGCHPNVITYTM--IMTSLAKCHMFEEALSVSHRMKSSGC 321
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+PD YN +IN L + G+ ++A + Q+E+P P + TY +IS +C
Sbjct: 322 KPDTLFYNSLINLLGKAGHLSEASQVF-QVEMPMNGVPRSLATYNTMISVFC 372
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+ T MK P V Y V+ A C+ NF +L+ M G C P+V TY
Sbjct: 236 IDEAMWTIEEMKAQGFPPSVITYTTVLEAYCKQHNFRMVYEILDSMSSEG--CHPNVITY 293
Query: 245 TILISSYCKYGM 256
T++++S K M
Sbjct: 294 TMIMTSLAKCHM 305
>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 543
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI+ L G V +ALA F M C P V Y+++++A C+ + +A LL++M G
Sbjct: 166 LIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKG 225
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD+ TY +LI++ C G
Sbjct: 226 --CEPDIVTYNVLINAMCSQG 244
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
RG + L F +M RG V T ++ L+ +E +A+ M+ C PD
Sbjct: 173 RGCVLDALAVF-DDMLHRGCSPSVVTYSI--LLDATCKESGYKQAVVLLDEMRSKGCEPD 229
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ YNV+INA+C G+ +A +L LP + C PD TYT ++ S C
Sbjct: 230 IVTYNVLINAMCSQGDVGEALKVLNS--LPSYGCKPDAVTYTPVLKSLC 276
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+ TCKE G K L EM +G + T V LI + +G V EAL
Sbjct: 203 DATCKESG--------YKQAVVLLDEMRSKGCEPDIVTYNV--LINAMCSQGDVGEALKV 252
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+ + C+PD Y V+ +LC + +A LL +M C PD T+ +I+S
Sbjct: 253 LNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMF--SNDCAPDEVTFNAVITSL 310
Query: 252 CKYG 255
C+ G
Sbjct: 311 CQKG 314
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L ++G V A +M + C PD+ Y+ +++ LC+ ++A LL+++
Sbjct: 302 TFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKEL 361
Query: 231 --ELPGFRCPPDVYTYTILISSYCKYGM 256
E+ C PD T+ +I+S C+ G+
Sbjct: 362 LAEMVSKNCIPDQVTFNTIITSLCQKGL 389
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 155 LKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL----ATFYRMKQFRCRPDVYAYNV 209
L +MS G +++T S++ + L +E V+EA+ M C PD +N
Sbjct: 323 LAQMSEHGCTPDIITYSSI---MDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNT 379
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY-CK 253
+I +LC+ G F++A ++++M G C PD+ TY ++ + CK
Sbjct: 380 IITSLCQKGLFDRAIKVVDEMSEHG--CIPDITTYNCIVDGFLCK 422
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
S G+G+ LIK L +G V +A + + YN ++N CR G
Sbjct: 86 SISGSGKDPAVIPCNILIKKLCADGRVADAERVVEALGP---SATIITYNTMVNGYCRAG 142
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N + AR +++ + PD +TY LI + C G
Sbjct: 143 NIDAARRMIDSVPF-----APDTFTYNPLIRALCVRG 174
>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 915
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LIK L +EAL M++ +P+++ Y V+I++LC F KAR LL
Sbjct: 322 TVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELL 381
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
QM G P+V TY LI+ YCK GM
Sbjct: 382 GQMLEKGLM--PNVITYNALINGYCKRGM 408
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 25/188 (13%)
Query: 89 NIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVE---RFFHFFHNEVTCKEM------- 138
++ + V + P+ + + L A F HW+ R+ H ++ + +
Sbjct: 80 SLKSMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYV 139
Query: 139 GIVFA------RGNNVKG----LWDFLKEMSRRGNGELVTTSTVTC---LIKVLGEEGLV 185
G+VF + + G + D ++M++ EL + C L+ L GLV
Sbjct: 140 GVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLV 199
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+E + M + + P++Y YN ++N C++GN +A + ++ G PD +TYT
Sbjct: 200 DEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGL--DPDFFTYT 257
Query: 246 ILISSYCK 253
LI YC+
Sbjct: 258 SLIMGYCQ 265
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++A+ +M + + PDV YN +I+ CR GNF+ A LL M G PD +TY
Sbjct: 443 VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGL--VPDQWTY 500
Query: 245 TILISSYCK 253
T +I S CK
Sbjct: 501 TSMIDSLCK 509
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+ F +MK C P V Y V+I +LC ++A L+++ME G + P+++TY
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIK--PNIHTY 361
Query: 245 TILISSYC 252
T+LI S C
Sbjct: 362 TVLIDSLC 369
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T ST T LI L ++G + A + F +M +PD + Y I CR G A ++
Sbjct: 601 TVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMM 660
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M G PD++TY+ LI Y G
Sbjct: 661 AKMRENGV--SPDLFTYSSLIKGYGDLG 686
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTS-TVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R N + L M+ RG LV T T +I L + V EA F ++Q
Sbjct: 473 CRSGNFDSAYRLLSLMNDRG---LVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVN 529
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V Y +I+ C+ G ++A +LE+M C P+ T+ LI C G
Sbjct: 530 PNVVMYTALIDGYCKAGKVDEAHLMLEKM--LSKNCLPNSLTFNALIHGLCADG 581
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L +G + EA +M + +P V ++I+ L + G+F+ A +QM
Sbjct: 569 TFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQM 628
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + PD +TYT I +YC+ G
Sbjct: 629 LSSGTK--PDAHTYTTFIQTYCREG 651
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ V+ D + ++G V T LI + G V+EA +M C
Sbjct: 507 LCKSKRVEEACDLFDSLEQKGVNPNVVMYTA--LIDGYCKAGKVDEAHLMLEKMLSKNCL 564
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ +N +I+ LC G +A L E+M G + P V T TILI K G
Sbjct: 565 PNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQ--PTVSTDTILIHRLLKDG 616
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ +KEM G + T TV LI L + +A +M + P+V YN +IN
Sbjct: 344 NLVKEMEETGIKPNIHTYTV--LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALIN 401
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C+ G A ++E ME + P+ TY LI YCK
Sbjct: 402 GYCKRGMIEDAVDVVELME--SRKLSPNTRTYNELIKGYCK 440
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + ++ A F M CR + AY +I+ LC ++A L +M
Sbjct: 255 TYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKM 314
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
+ C P V TYT+LI S C
Sbjct: 315 K--DDECFPTVRTYTVLIKSLC 334
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI + G++ +A+ M+ + P+ YN +I C+ N +KA +L +M
Sbjct: 395 TYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKM 453
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ PDV TY LI C+ G
Sbjct: 454 --LERKVLPDVVTYNSLIDGQCRSG 476
>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
Length = 1039
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ T LI+ L E V EAL M Q C P+++ Y ++I LC+ G + AR LL++M
Sbjct: 255 SYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVLLDEM 314
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P V+TY +I YCK G
Sbjct: 315 PRRGV--VPSVWTYNAMIDGYCKSG 337
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F++ N + +++M G + T + L++ L ++ +NEAL+ +M +
Sbjct: 609 FSKAGNTEFAAALIEKMVNEGCK--ADSHTYSVLLQALCKQKKLNEALSILDQMTLRGVK 666
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ AY ++I+ + + G + A+ + +M G + P TYT+ ISSYCK G
Sbjct: 667 GNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHK--PSAITYTVFISSYCKIG 718
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G ++T T T L+ + G A A +M C+ D + Y+V++ ALC+ N+A
Sbjct: 594 GVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEA 653
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+L+QM L G + ++ YTI+IS K G
Sbjct: 654 LSILDQMTLRGVK--GNIVAYTIIISEMIKEG 683
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ L +EG +++A M + P V+ YN +I+ C+ G A + M
Sbjct: 290 TYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLM 349
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
E G C PD +TY LI C
Sbjct: 350 E--GNGCNPDDWTYNSLIHGLC 369
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R +G + T T L+ G + +A M CR + Y+Y ++I LC
Sbjct: 210 RESGMEMDTYTCNALLLGYCRTGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCV 269
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A LL M G C P+++TYT+LI CK G
Sbjct: 270 REALVLLLMMLQDG--CSPNLHTYTLLIRGLCKEG 302
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM RRG + + T +I + G + +AL M+ C PD + YN +I+
Sbjct: 310 LLDEMPRRG--VVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHG 367
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC G ++A LL GF P V T+T +I+ YCK
Sbjct: 368 LCG-GKPDEAEELLNGAIARGF--SPTVITFTNIINGYCK 404
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T T +I +EG + A F +++ D Y N ++ CR G+ KA
Sbjct: 178 GLLPDTVTYNTMIMAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRTGDLRKA 237
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+LL M L G C + Y+YTILI C+
Sbjct: 238 CWLLMMMPLMG--CRRNEYSYTILIQGLCE 265
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L +M+ RG G +V T +I + +EG + A + F M +P Y V I+
Sbjct: 656 ILDQMTLRGVKGNIVA---YTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFIS 712
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+ C++G +A L+ +ME G PDV TY + I+
Sbjct: 713 SYCKIGRIEEAGHLIGEMERNGV--APDVVTYNVFING 748
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V + + +K D L E+ NG T +I + G V AL F + C
Sbjct: 436 VLIKKHRLKEAKDTLNEIF--ANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGC 493
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
RP+ + Y+ +I L + +KA L+ +M+ G P V TYT LI CK
Sbjct: 494 RPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGI--TPGVITYTTLIQGQCK 544
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L ++ +++A+A +M++ P V Y +I C+ F+ A L E M
Sbjct: 499 TYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMM 558
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G PD Y +L + CK G
Sbjct: 559 EQNGL--TPDEQAYNVLTDALCKSG 581
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++AL M +C+ D+ AY V+I+ L + +A+ L ++ G P+V Y
Sbjct: 408 IDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTLNEIFANGL--SPNVVIY 465
Query: 245 TILISSYCKYG 255
T +I +YCK G
Sbjct: 466 TSIIDAYCKVG 476
>gi|356544600|ref|XP_003540737.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
mitochondrial-like [Glycine max]
Length = 449
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ LG+ G V EA + + MK+ R +PDV YN++IN LC+ G +A +L +M++ G
Sbjct: 286 LMNDLGKRGKVEEAKSLLHEMKKRRLKPDVVTYNILINYLCKEGKAMEAYKVLLEMQIGG 345
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+ TY +++ C+ G
Sbjct: 346 --CVPNAATYRMVVDGLCQIG 364
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T ++K +G +A F M Q R +P V YN +I LCR G+ +KA LLE
Sbjct: 175 TVTFNIMVKGRLAKGEWGKACEVFDEMLQKRVQPSVVTYNSLIGFLCRKGDLDKAMALLE 234
Query: 229 QMELPGFRCPPDVYTYTILISSYC 252
M G + TY +L+ C
Sbjct: 235 DMGQKGKHA--NEVTYALLMEGLC 256
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ V+ L EM +R V T + LI L +EG EA M+ C
Sbjct: 290 LGKRGKVEEAKSLLHEMKKRRLKPDVVTYNI--LINYLCKEGKAMEAYKVLLEMQIGGCV 347
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ Y +V++ LC++G+F A +L M L CP T+ ++ K G
Sbjct: 348 PNAATYRMVVDGLCQIGDFEVALSVLNAM-LTSRHCPRS-ETFNCMVVGLLKSG 399
>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
Length = 1056
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + ++FL+ M R G V T ++ LI L + G ++ L F M + C+
Sbjct: 729 LCKAGRIDEAYEFLERMIRAGRIPDVVTFSI--LINGLCDAGRIDTGLELFCGMAERGCK 786
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
D+YAYN +INA C G F+ A LLE+M+ G + T+ I+I + C
Sbjct: 787 ADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGI--AKNTVTHGIVIKALC 835
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R N V L+EM+ RG T L+ L +G EA + RM C
Sbjct: 46 LCRDNEVDKGCKLLEEMAGRGCAP--NAVTYNTLVNALLGQGRAKEAFSLLERMAANGCP 103
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++ + ++I LC+ G A ++++M GF PDV +T+L+ + C+ G
Sbjct: 104 PELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGF--VPDVEIHTVLLHALCELG 155
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE I+ A +NV F + + R +VT ST LI L + ++EAL +
Sbjct: 519 CKEQRILDA--HNV-----FKRALERGCRPNVVTYST---LIDGLSKMAKMDEALQLLAK 568
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
M + CR + Y+ V++ L +VG A +L QM G C PD TY LI + K
Sbjct: 569 MVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAG--CLPDAVTYNTLIDGFFK 625
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + G V +A F + QF RP V Y+ VI+ LCR +K LLE+M
Sbjct: 3 TYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM 62
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P+ TY L+++ G
Sbjct: 63 --AGRGCAPNAVTYNTLVNALLGQG 85
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
+VT STV I L + V++ M C P+ YN ++NAL G +A
Sbjct: 36 VVTYSTV---IDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFS 92
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LLE+M G CPP++ T+ ++I CK G
Sbjct: 93 LLERMAANG--CPPELITFGLIIKGLCKEG 120
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ LI L + G ++EA RM + PDV ++++IN LC G + L M
Sbjct: 723 SALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAE 782
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C D+Y Y +I++YC G
Sbjct: 783 RG--CKADIYAYNAMINAYCLKG 803
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 149 KGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
K + L+ M+ G EL+T + IK L +EG + A M PDV +
Sbjct: 88 KEAFSLLERMAANGCPPELITFGLI---IKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIH 144
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V+++ALC +G ++A F +Q+ L GF PD TY ++ K G
Sbjct: 145 TVLLHALCELGRVDEAWFFFQQVLLIGF--TPDAVTYNTMVDGLYKAG 190
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L++M R G L T LI + + EA+ M + P V Y + + L
Sbjct: 601 LRQM--RDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGL 658
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
CR G F++A +L+ M G C P+ TY+ ++ CK G T
Sbjct: 659 CRSGRFDEAVEILDYMAARG--CAPNAITYSSIVDGLCKAGRVT 700
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 157 EMSRRGNGELVTTSTVT-CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
E+ R N VT STV L+KV G + +A+ +M+ C PD YN +I+
Sbjct: 571 ELGCRAN--TVTYSTVVDGLLKV----GRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFF 624
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +A LL +M GF P V TYT L C+ G
Sbjct: 625 KRQRLREAVGLLREMLEAGFH--PSVVTYTTLCHGLCRSG 662
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+EA F MK+ C DV YN+++ LC++ +A +E M C P+V T+
Sbjct: 326 VDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTE-GCSPNVVTF 384
Query: 245 TILISSYCKYG 255
+ LI C G
Sbjct: 385 STLIQGLCNAG 395
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+EM G V T T C L G +EA+ M C P+ Y+ +++
Sbjct: 635 LLREMLEAGFHPSVVTYTTLC--HGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDG 692
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G +A E+M P V Y+ LI CK G
Sbjct: 693 LCKAGRVTEALGYFEKMARDEV-VAPHVIAYSALIDGLCKAG 733
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+K C P+V +N ++N LC+ ++A L + M+ G C DV TY IL+ CK
Sbjct: 301 LKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESG--CSADVITYNILLKGLCK 357
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++ + + EM RG V TV L+ L E G V+EA F ++
Sbjct: 116 LCKEGEIEAAFRVVDEMVDRGFVPDVEIHTV--LLHALCELGRVDEAWFFFQQVLLIGFT 173
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD YN +++ L + G A +L Q+ F P V+T+TI + K G
Sbjct: 174 PDAVTYNTMVDGLYKAGRLEAAGMVL-QLLAESFS-SPTVFTFTIAVDGLSKAG 225
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L+ L + G+V +AL M + PDV +N V++ LC+ A +
Sbjct: 472 TLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVF 531
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++ G C P+V TY+ LI K
Sbjct: 532 KRALERG--CRPNVVTYSTLIDGLSK 555
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 20/120 (16%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDVYAYNVVINALC 215
E+ RR G T + LI+ L G VN+A + RM P+ + Y ++ LC
Sbjct: 369 ELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLC 428
Query: 216 RVGNFNKARFLLEQMELPGFR-------------------CPPDVYTYTILISSYCKYGM 256
+ G+ + EQM +R C P + TY L++ K GM
Sbjct: 429 KAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGM 488
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDVYAYNV 209
L+D +KE +G T L+K L + + EA M++ C P+V ++
Sbjct: 332 LFDVMKE-----SGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFST 386
Query: 210 VINALCRVGNFNKARFLLEQM-ELPGFRCPPDVYTYTILISSYCKYG 255
+I LC G N+A + E+M + G P+ +TY L+ CK G
Sbjct: 387 LIQGLCNAGRVNQAWEVYERMVAVEGI--SPNRFTYAFLLEGLCKAG 431
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 150 GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
GL +F+ E +G T ++ L +E + +A F R + CRP+V Y+
Sbjct: 494 GLLEFMIE-----SGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYST 548
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+I+ L ++ ++A LL +M G C + TY+ ++ K G
Sbjct: 549 LIDGLSKMAKMDEALQLLAKMVELG--CRANTVTYSTVVDGLLKVG 592
>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
RGN V+ + + RR +VT T L L ++G V A + M +
Sbjct: 440 RGNMVEAFRVHNEMVGRRVAPNVVT---YTALSDGLCKQGDVRAANELLHEMCNKGLELN 496
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
VY YN +IN LC+ GN +A ++ +ME G R DVYTYT LI + CK G
Sbjct: 497 VYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRT--DVYTYTTLIDTLCKSG 546
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + + +V+ + L EM +G + T LI L + G + +A+
Sbjct: 461 NVVTYTALSDGLCKQGDVRAANELLHEMCNKGLE--LNVYTYNSLINGLCKFGNLEQAMR 518
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M+ R DVY Y +I+ LC+ G F++A +L++M G + P + TY +L++
Sbjct: 519 IMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIK--PSIATYNVLMNG 576
Query: 251 YCKYG 255
+C G
Sbjct: 577 FCMSG 581
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R +K L+EM +G V T TV LI + G + EA M R
Sbjct: 402 LCRAGELKEADRVLQEMVDKGLDVDVVTYTV--LIDGYCKRGNMVEAFRVHNEMVGRRVA 459
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V Y + + LC+ G+ A LL +M G +VYTY LI+ CK+G
Sbjct: 460 PNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLEL--NVYTYNSLINGLCKFG 511
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I +G + A F M++ D + +IN LCR G +A +L++M
Sbjct: 361 TTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVD 420
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G DV TYT+LI YCK G
Sbjct: 421 KGLDV--DVVTYTVLIDGYCKRG 441
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F ++ +EM +RG T T LI L G + EA M
Sbjct: 367 FCSKGDLAAARRLFEEMQKRGLA--ADRVTHTALINGLCRAGELKEADRVLQEMVDKGLD 424
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
DV Y V+I+ C+ GN +A F + E+ G R P+V TYT L CK G
Sbjct: 425 VDVVTYTVLIDGYCKRGNMVEA-FRVHN-EMVGRRVAPNVVTYTALSDGLCKQG 476
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 4/106 (3%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
N++ + EM G T T LI L + G + A M +P +
Sbjct: 512 NLEQAMRIMTEM--EAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIAT 569
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
YNV++N C G + LLE M R P+V TY L+ YC
Sbjct: 570 YNVLMNGFCMSGRVEGGKKLLEWMLEKNVR--PNVVTYNSLMKQYC 613
>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 78/163 (47%), Gaps = 16/163 (9%)
Query: 104 NPQKVTLG-INKATEFYHWVERFFHFFHNEVTCKEMGIVF---ARGNNVKGLWDFLK--- 156
+P +TL + K H V+ HF H+ V +G F + G + GL +
Sbjct: 138 HPNTITLTTLVKGFCLNHKVKEALHF-HDHVL--ALGFHFNQVSYGTLINGLCKIGETRA 194
Query: 157 --EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+M R+ G+LV+T V + +I L ++ LVN+A + M R P V N +I
Sbjct: 195 ALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIY 254
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C VG F +A LL +M L PDVYT+ IL+ + CK G
Sbjct: 255 GYCIVGQFKEAFGLLREMVLKNIN--PDVYTFNILVDALCKEG 295
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W+ + EM R +G+ T LI L + V++A+A ++K + D+Y YN++I
Sbjct: 391 WELVDEM--RDSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILI 448
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ LC+ G A+ + + + + G+ V+TYTI+I+ C G+
Sbjct: 449 DGLCKQGRLKDAQVIFQDLLIKGYNLT--VWTYTIMINGLCLEGL 491
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
+V++AL+ FY M+ R PD YN +I+ LC+ G + A L+++M G P D+ T
Sbjct: 351 MVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQ--PADIIT 408
Query: 244 YTILISSYCK 253
Y LI + CK
Sbjct: 409 YNSLIDALCK 418
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI L + G ++ A M+ D+ YN +I+ALC+ + +KA L++
Sbjct: 371 TVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADIITYNSLIDALCKNHHVDKAIALVK 430
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+++ G + D+YTY ILI CK G
Sbjct: 431 KIKDQGIQL--DMYTYNILIDGLCKQG 455
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 20/104 (19%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L +EG + EA + M + PDV Y+ +++ C V NKA+ + +
Sbjct: 283 TFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVY-SI 341
Query: 231 ELPGF-------------------RCPPDVYTYTILISSYCKYG 255
+ GF R PD TY LI CK G
Sbjct: 342 VINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSG 385
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++ +++F+RM P V + ++++L ++ ++ L Q+E G + P++ +
Sbjct: 52 VDDLVSSFHRMLLLNPAPSVIEFGKILSSLVKLKHYPTVISLFYQLEFNGIK--PNIVSL 109
Query: 245 TILISSYCKYG 255
+ILI+ YC G
Sbjct: 110 SILINCYCHLG 120
>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
Length = 822
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
RG+ +GL L EM +G L T T LI LG++G + + + F M++ P+
Sbjct: 252 RGDMGRGLL-LLGEMEAKGF--LPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPN 308
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V YN VI+ALC+ + +A +L+QM G C PD+ T+ LI+ C G
Sbjct: 309 VQIYNSVIDALCKCWSATQAMVILKQMFASG--CDPDIITFNTLITGLCHEG 358
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFR 199
F R N+ + M +G V V+C +IK + G+++EA+ M++
Sbjct: 494 FIRSENLGDARKIFEFMEHKG----VRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVG 549
Query: 200 CRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C PD + Y VI+ + GN N A R+L + ++ +C P+V TY+ LI+ YCK G
Sbjct: 550 CIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKR---KCKPNVVTYSSLINGYCKTG 603
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I ++G +N AL M + +C+P+V Y+ +IN C+ G+ + A L M
Sbjct: 556 TYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANM 615
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ P+V TYTILI S K
Sbjct: 616 QAEALS--PNVVTYTILIGSLFK 636
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 56/141 (39%), Gaps = 39/141 (27%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D L EM RG+ V T LI L G V+EAL +M + + PDV YNV+I+
Sbjct: 400 DLLMEMMGRGHTPDVVT--FGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLIS 457
Query: 213 ALC-----------------------------------RVGNFNKARFLLEQMELPGFRC 237
LC R N AR + E ME G R
Sbjct: 458 GLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVR- 516
Query: 238 PPDVYTYTILISSYCKYGMQT 258
PD+ + +I YC++GM +
Sbjct: 517 -PDIVSCNAMIKGYCQFGMMS 536
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R ++ + L+D EM +G ++ V L++ L EG V E L C P
Sbjct: 184 RWDDARKLYD---EMLGEDSGADNYSTCV--LVRGLCLEGRVEEGLKLIEARWGAGCIPH 238
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V YNV+I+ CR G+ + LL +ME GF P + TY LI+ K G
Sbjct: 239 VVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFL--PTLVTYGSLINCLGKKG 288
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 14/119 (11%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVT--TSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ +++ + EM +RG V S + L K +A+ +M
Sbjct: 284 LGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWS----ATQAMVILKQMFASG 339
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQM---ELPGFRCPPDVYTYTILISSYCKYG 255
C PD+ +N +I LC G+ KA L + EL P+ +YT LI +C G
Sbjct: 340 CDPDIITFNTLITGLCHEGHVRKAEHFLREAIRREL-----NPNQLSYTPLIHGFCMRG 393
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
E R G L + L+K+L E+ ++A + M D Y+ V++ LC
Sbjct: 157 ERLREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGEDSGADNYSTCVLVRGLCL 216
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
G + L+E G C P V Y +LI YC+ G
Sbjct: 217 EGRVEEGLKLIEARW--GAGCIPHVVFYNVLIDGYCRRG 253
>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
Length = 655
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 26/188 (13%)
Query: 68 RQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFH 127
+++G R+ L +R+L + D G YR F+ W +
Sbjct: 113 QESGVAVRSGLTERVLNRCGDA--------GNLGYR--------------FFVWASKQPG 150
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187
+ H+ K M + + +W ++EM RR N + V+ L++ +V +
Sbjct: 151 YRHSYEVYKAMIKILGKMRQFGAVWALIEEM-RRENPQFVSPYVFVVLMRRFASARMVKK 209
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ M ++ C PD + + +++ALC+ G+ +A L E M + R P + +T L
Sbjct: 210 AIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRI---RFTPTLKHFTSL 266
Query: 248 ISSYCKYG 255
+ +C+ G
Sbjct: 267 LYGWCREG 274
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + +A M++ C P+V ++ +I ALC +A + +M+ G CP D
Sbjct: 309 GKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCG--CPADAV 366
Query: 243 TYTILISSYCKYG 255
TYT LIS +CK+G
Sbjct: 367 TYTTLISGFCKWG 379
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 55/147 (37%), Gaps = 35/147 (23%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+A + +D LKEM R+ V + T LI+ L + + EA+ F+ M+ C
Sbjct: 305 YAAAGKMVDAYDLLKEMRRKECEPNVMS--FTTLIQALCAKKKMEEAMRVFFEMQSCGCP 362
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQM------------------------------- 230
D Y +I+ C+ G +K LL+ M
Sbjct: 363 ADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIEL 422
Query: 231 --ELPGFRCPPDVYTYTILISSYCKYG 255
E+ C PD+ Y I+I CK G
Sbjct: 423 MEEMRKIGCTPDLNIYNIVIRLACKLG 449
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+ E + M++ C PD+ YN+VI C++G + + +ME G P + T+
Sbjct: 416 LEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGL--SPGLDTF 473
Query: 245 TILISSY 251
I+I +
Sbjct: 474 VIMIHGF 480
>gi|224075802|ref|XP_002304774.1| predicted protein [Populus trichocarpa]
gi|222842206|gb|EEE79753.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R +G + + T LIK L + G + E + RM++ C+PDV+AY ++ AL GN
Sbjct: 257 RRDGLVEESVTYMILIKGLCKAGRIEEMMEVLGRMRENLCKPDVFAYTAMVRALAGEGNL 316
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ + E+M+ G PDV Y L+++ CK G
Sbjct: 317 DACLRVWEEMKRDGVE--PDVMAYVTLVTALCKGG 349
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 92/224 (41%), Gaps = 25/224 (11%)
Query: 37 TKTQNPFTIESVA--DVLKSIPRFFFQSPRSIGRQTGFRHRTPLKQRILKKEADNIANNV 94
+K Q+P + S+A L I RF + R Q G T L + L++ ++ V
Sbjct: 76 SKPQSPRSRHSLALSQRLSPIARFILDAFRKNRNQWGPEVVTELCK--LRRVTPDLVAEV 133
Query: 95 LVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDF 154
L NPQ AT+F+HW + F H + R N + D
Sbjct: 134 L----KVENNPQL-------ATKFFHWAGKQKGFKHTFASYNAFAYNLNRSNFFRAA-DQ 181
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY---RMKQFRCRPDVYAYNVVI 211
L E+ G+ T LI++ + N L +Y +M +F +P V+ YN ++
Sbjct: 182 LPELM-EAQGKPPTEKQFEILIRMHSD---ANRGLRVYYVYQKMVKFGVKPRVFLYNRIM 237
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++L + G+ + A + E G + TY ILI CK G
Sbjct: 238 DSLIKTGHLDLALSVYEDFRRDGL--VEESVTYMILIKGLCKAG 279
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +++ L EG ++ L + MK+ PDV AY ++ ALC+ G +K + ++M+
Sbjct: 304 TAMVRALAGEGNLDACLRVWEEMKRDGVEPDVMAYVTLVTALCKGGRVDKGYEVFKEMK- 362
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G R D Y IL+ ++ G
Sbjct: 363 -GRRILIDRGIYGILVEAFVADG 384
>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 507
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 13/158 (8%)
Query: 104 NPQKVTLGINK-------ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLK 156
+P+ V +NK A F+ W E+ F HN + + K +W+ +
Sbjct: 85 SPELVVAVLNKLSNAGILALSFFRWAEKQQGFNHNTEIFHALIEALGKIRQFKMIWNLVD 144
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EM +R +L+ T + + + ++ EAL TF RM+++ +P + +N +I+ LC+
Sbjct: 145 EMKQR---KLLNGDTFSLIARRYVRAKVIKEALKTFERMEKYGLKPQISDFNKLIDVLCK 201
Query: 217 VG-NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ KA+ L ++M + P++ +YTILI + +
Sbjct: 202 SKFHVEKAQELFDKMR--QWNLEPNLKSYTILIEGWSQ 237
>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Glycine max]
Length = 511
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 10/102 (9%)
Query: 157 EMSRRGNGELVTTSTVTC---LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
M++RG T V C +I L + +V+EA++ F MK PD+ YN +I+
Sbjct: 327 SMAQRG-----VTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDG 381
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ + +A L ++M+ G + PDVY+YTIL+ CK G
Sbjct: 382 LCKNHHLERAIALCKRMKEQGIQ--PDVYSYTILLDGLCKSG 421
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + + A+A RMK+ +PDVY+Y ++++ LC+ G A+ + +++
Sbjct: 374 TYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRL 433
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G+ +V+ YT+LI+ CK G
Sbjct: 434 LAKGYHL--NVHAYTVLINRLCKAG 456
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
K M +G V + T+ L+ L + G + +A F R+ +V+AY V+IN LC
Sbjct: 396 KRMKEQGIQPDVYSYTI--LLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLC 453
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+ G F++A L +ME G C PD T+ I+I +
Sbjct: 454 KAGFFDEALDLKSKMEDKG--CMPDAVTFDIIIRA 486
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F ++K + L EM + V T + LI L +EG + EA M + +
Sbjct: 242 FCIMGHLKEAFSLLNEMKLKNINPNVCTFNI--LIDALSKEGKMKEAKILLAVMMKACIK 299
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PDV+ YN +I+ V A+++ M G PDV YT +I+ CK M
Sbjct: 300 PDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVT--PDVQCYTNMINGLCKTKM 352
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 118 FYHWVERFFHFFHNEVTCKEM--GIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCL 175
F + ++R FH N +T + G+ F RG K L+ F ++ +G +L S T L
Sbjct: 115 FANILKRGFH--PNAITLNTLIKGLCF-RGEIKKALY-FHDQLVAQG-FQLDQVSYGT-L 168
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
I L + G +++ +PDV YN +IN+LC+ A + +M + G
Sbjct: 169 INGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGI 228
Query: 236 RCPPDVYTYTILISSYCKYG 255
PDV TYT LI +C G
Sbjct: 229 S--PDVVTYTTLIHGFCIMG 246
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D EM +G V T T LI G + EA + MK P+V +N++I+
Sbjct: 218 DVYSEMIVKGISPDVVTYTT--LIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILID 275
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
AL + G +A+ LL M + PDV+TY LI Y
Sbjct: 276 ALSKEGKMKEAKILLAVMMKACIK--PDVFTYNSLIDGY 312
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V A FY M Q PDV Y +IN LC+ ++A L E+M+ PD+ TY
Sbjct: 318 VKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMI--PDIVTY 375
Query: 245 TILISSYCK 253
LI CK
Sbjct: 376 NSLIDGLCK 384
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG T++ LI + + A + F + + P+ N +I LC G K
Sbjct: 86 NGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKK 145
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A + +Q+ GF+ D +Y LI+ CK G
Sbjct: 146 ALYFHDQLVAQGFQL--DQVSYGTLINGLCKTG 176
>gi|357121501|ref|XP_003562458.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18020-like [Brachypodium distachyon]
Length = 737
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+E L M Q C PDV N V++ C+VG +AR +L+ M + G CPPDV T+T
Sbjct: 366 SEQLGVLMSMLQEECAPDVITMNTVVHGFCKVGRAQEARRILDDM-INGKFCPPDVVTFT 424
Query: 246 ILISSYCKYG 255
LIS Y G
Sbjct: 425 TLISGYLDVG 434
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 11/121 (9%)
Query: 141 VFARGNNVKGLWDF----LKEMSRRGNGELVTTSTVTC----LIKVLGEEGLVNEALATF 192
F RG +V G D L + R G+ T L++ L EG +
Sbjct: 162 AFLRGRDVAGAMDLAETHLWPATERTRGDEEDQGTKNAAFAHLLQSLCAEGFFHVVFHVA 221
Query: 193 YRMKQFRCR-PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
M Q RCR PD + Y ++++LCR G + A ++ M G CP V +Y ++
Sbjct: 222 DEMPQRRCRVPDEFVYAQMVDSLCRAGQHHGASRIVYVMGKRGV-CPSTV-SYNCIVHGL 279
Query: 252 C 252
C
Sbjct: 280 C 280
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
N + + T T +IK L + G + +A + + D Y Y+ + LC++G +
Sbjct: 485 NNVVADSVTHTVVIKGLCDAGQLEKAKGFWDNVVWPSGIHDGYVYSAIFRGLCKLGKLEQ 544
Query: 223 A-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
A FL E ++ F P V Y IL+ + CK GM+
Sbjct: 545 ACDFLYELVDSGVF---PGVVCYNILVDTACKQGMK 577
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 160 RRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
RR + +VT ++V +K L GLV+ A+ MK D + VVI LC G
Sbjct: 450 RRCSPNIVTYNSV---LKGLFCLGLVDSAMQVIDEMKLNNVVADSVTHTVVIKGLCDAGQ 506
Query: 220 FNKARFLLEQMELP-GFRCPPDVYTYTILISSYCKYG 255
KA+ + + P G D Y Y+ + CK G
Sbjct: 507 LEKAKGFWDNVVWPSGIH---DGYVYSAIFRGLCKLG 540
>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 915
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T +I L + G EAL F M + C+P+V+ Y V+I +LC NF+ A+ +L
Sbjct: 308 TVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKIL 367
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
M G P V TY LI YCK G+
Sbjct: 368 NGMLEKGL--IPSVVTYNALIDGYCKKGLSA 396
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R NV M +G L + T LI E V+EAL F +M + C
Sbjct: 249 YCRNKNVDAANAIFLSMPNKGC--LRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCW 306
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P V Y V+I ALC++G +A + ++M C P+V+TYT+LI S C+
Sbjct: 307 PTVRTYTVIIFALCQLGRKTEALNMFKEMTEK--HCQPNVHTYTVLICSLCE 356
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + I L + GLV EA + F +K+ + + Y+ +I+ C+VG + RFLL++M
Sbjct: 486 TYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKM 545
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C P+ TY LI YCK
Sbjct: 546 LSAG--CVPNSITYNSLIDGYCK 566
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N T E+ + F RG N+ L +M R V T + LI +EG + A
Sbjct: 413 NARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNI--LIHGQCKEGDLGSAYK 470
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M + PD + Y+V I+ LC+ G +AR L E ++ G + + Y+ LI
Sbjct: 471 LLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIK--ANEVIYSTLIDG 528
Query: 251 YCKYG 255
YCK G
Sbjct: 529 YCKVG 533
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A++ ++M + + +P+V YN++I+ C+ G+ A LL M G PD +TY
Sbjct: 430 IHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGL--VPDEWTY 487
Query: 245 TILISSYCKYGM 256
++ I + CK G+
Sbjct: 488 SVFIDTLCKRGL 499
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 29/227 (12%)
Query: 54 SIPRFFFQSPRSIGRQTGFRHRTPLK-----QRILKKEADNIANNVLVLGPAAYRNPQKV 108
SI FF SP S+ + H P + R ++ ++ N + + P+ +
Sbjct: 27 SITHRFFTSPASLPQSFSVEHDIPAQLFSILSRPNWQKHPSLKNLIPSIAPSHISALFAL 86
Query: 109 TLGINKATEFYHWVERFFHFFHNEVT----------------CKEMGIVFARGNNVKGLW 152
L A F++W+ + F HN + + M I+ + +
Sbjct: 87 NLDPQTALAFFNWIGQKHGFKHNVQSHVSMLNILVPNGYLRIAENMRILMIKSTDSSENA 146
Query: 153 DFLKEMSRRGNGEL------VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
F+ EM R N + +T L+ +L +++E + + M P+++
Sbjct: 147 LFVLEMLRSMNRRVDAFKFKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFT 206
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N ++N C++GN +A + ++ G D +TYT LI YC+
Sbjct: 207 LNTMVNGYCKLGNVVEAELYVSKIVQAGLSL--DTFTYTSLILGYCR 251
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + + T LI ++GL AL M+ C P+ YN +I CR N +KA
Sbjct: 374 GLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKA 433
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL +M + P+V TY ILI CK G
Sbjct: 434 MSLLHKMLERKLQ--PNVVTYNILIHGQCKEG 463
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LI L ++ ++A F +M PDV+ Y I+A C G A L+
Sbjct: 588 AADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLI 647
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M G PD YT+ I +Y ++G
Sbjct: 648 CKMNAKGIM--PDTMLYTLFIDAYGRFG 673
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
+ L++ LKE + N E++ ++ + KV G V++ +M C P+ Y
Sbjct: 503 ARSLFESLKEKGIKAN-EVIYSTLIDGYCKV----GKVSDGRFLLDKMLSAGCVPNSITY 557
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N +I+ C+ NF +AR L++ M P TYTILI + K
Sbjct: 558 NSLIDGYCKEKNFKEARLLVDIMIKRDIE--PAADTYTILIDNLLK 601
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T T LI V+ A A F M C + +Y +I+ C ++A
Sbjct: 234 GLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEA 293
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
L QM C P V TYT++I + C+ G +T
Sbjct: 294 LKLFSQMHED--NCWPTVRTYTVIIFALCQLGRKT 326
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 8/117 (6%)
Query: 140 IVFAR---GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196
I+FA G + L + KEM+ + V T TV LI L E+ ++A M
Sbjct: 315 IIFALCQLGRKTEAL-NMFKEMTEKHCQPNVHTYTV--LICSLCEDSNFDDAKKILNGML 371
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ P V YN +I+ C+ G A +L ME C P+ TY LI +C+
Sbjct: 372 EKGLIPSVVTYNALIDGYCKKGLSASALEILSLME--SNNCSPNARTYNELILGFCR 426
>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 603
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT +T+ ++ L + G + EA+ R Q C PDV Y ++I A C +A
Sbjct: 208 DVVTYNTI---LRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAM 264
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL++M G C PDV TY +LI+ CK G
Sbjct: 265 KLLDEMRKKG--CKPDVVTYNVLINGICKEG 293
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ + V +A+ M++ C+PDV YNV+IN +C+ G ++A L M
Sbjct: 246 TYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNM 305
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L G C P+V T+ I++ S C G
Sbjct: 306 PLYG--CQPNVITHNIILRSMCSTG 328
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E TC + G+ G +K L EM ++G V T V LI + +EG ++EA+
Sbjct: 252 EATCNDSGV----GQAMK----LLDEMRKKGCKPDVVTYNV--LINGICKEGRLDEAIKF 301
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
M + C+P+V +N+++ ++C G + A LL M G C P V T+ ILI+
Sbjct: 302 LNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKG--CSPSVVTFNILINFL 359
Query: 252 CK 253
C+
Sbjct: 360 CR 361
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ L+EM R+G +++T ST L++ LG EG V+EA+ F+ M+ +P YN ++
Sbjct: 475 ELLEEMRRKGLKPDIITYST---LLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIM 531
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
LC+ ++A L M G C P TYTILI
Sbjct: 532 LGLCKAQQTSRAIDFLAYMVEKG--CKPTKATYTILI 566
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L +M R+G V T + LI L + L+ A+ +M + C P+ +YN +++
Sbjct: 336 LLADMLRKGCSPSVVTFNI--LINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHG 393
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ ++A LE M G C PD+ TY L+++ CK G
Sbjct: 394 FCQEKKMDRAIEYLEIMVSRG--CYPDIVTYNTLLTALCKDG 433
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 11/139 (7%)
Query: 117 EFYHWVERFFH--FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
E ++ER + + + C + F R + ++ + G V T V
Sbjct: 125 EGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNV-- 182
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE-QMELP 233
LI + G +++AL RM PDV YN ++ +LC G +A +L+ QM+
Sbjct: 183 LIGGYCKSGEIDKALQVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQ-- 237
Query: 234 GFRCPPDVYTYTILISSYC 252
C PDV TYTILI + C
Sbjct: 238 -RECYPDVITYTILIEATC 255
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
Query: 124 RFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG 183
R F F + + +++ R ++ FL+ M +G ++ T LI+ G
Sbjct: 103 RSFEEFASNIHLRKL----VRNGELEEGLKFLERMIYQG--DIPDVIACTSLIRGFCRSG 156
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
+A ++ PDV YNV+I C+ G +KA +LE+M + PDV T
Sbjct: 157 KTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERMSV-----APDVVT 211
Query: 244 YTILISSYCKYG 255
Y ++ S C G
Sbjct: 212 YNTILRSLCDSG 223
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 153 DFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
++L+ M RG ++VT +T L+ L ++G + A+ ++ C P + YN VI
Sbjct: 405 EYLEIMVSRGCYPDIVTYNT---LLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVI 461
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+ L +VG A LLE+M G + PD+ TY+ L+
Sbjct: 462 DGLTKVGKTEYAAELLEEMRRKGLK--PDIITYSTLL 496
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+E ++ A+ M C PD+ YN ++ ALC+ G + A +L Q+ G C P
Sbjct: 396 QEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKG--CSPV 453
Query: 241 VYTYTILISSYCKYG 255
+ TY +I K G
Sbjct: 454 LITYNTVIDGLTKVG 468
>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
Length = 772
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 14/200 (7%)
Query: 67 GRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTL-----GINKATEFYHW 121
G R + I K+ +AN +L P+ P V G+ A +
Sbjct: 281 GCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEA 340
Query: 122 VERFFHFFH-----NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLI 176
E F ++VT + F + V + + L++M G V T T +I
Sbjct: 341 EELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTT--VI 398
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
+EGL++EA+ M C+P+ +Y +V+ LC G + A L+ QM G
Sbjct: 399 NGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG-- 456
Query: 237 CPPDVYTYTILISSYCKYGM 256
CPP+ T+ LI+ CK G+
Sbjct: 457 CPPNPVTFNTLINFLCKKGL 476
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
+ G + T ++ + E+G V+EA+ ++ F C D+ +YN V+ LC
Sbjct: 171 AMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAK 230
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ L+++M C P++ T+ LI C+ G+
Sbjct: 231 RWGDVEELMDEM--VRVDCAPNIVTFNTLIGYLCRNGL 266
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 174 CLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
C+ K G+ E L++E M + C P++ +N +I LCR G F + +L QM
Sbjct: 227 CMAKRWGDVEELMDE-------MVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE 279
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C PD+ Y +I CK G
Sbjct: 280 HG--CTPDIRMYATIIDGICKEG 300
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 149 KGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
+GL D LK MS G T + T ++K L G +A +M Q C P+
Sbjct: 404 EGLIDEAVMLLKSMSSCGCKP--NTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNP 461
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+N +IN LC+ G +A LL+QM + G C PD+ +Y+ +I K G
Sbjct: 462 VTFNTLINFLCKKGLVEQAIELLKQMLVNG--CSPDLISYSTVIDGLGKAG 510
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 14/201 (6%)
Query: 55 IPRFFFQSPRSIGRQTGFRHRTPLKQRILKKEAD-NIANNVLVLGPAAYRNPQKVTLGIN 113
IP + + R GFR+ + + + K + N LVL + +G+
Sbjct: 145 IPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLL 204
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFA-RGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
+ F+ + N V G+ A R +V+ L D + + N +VT +T
Sbjct: 205 RKLAFFGCEADIVSY--NAVL---KGLCMAKRWGDVEELMDEMVRVDCAPN--IVTFNT- 256
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
LI L GL +M + C PD+ Y +I+ +C+ G+ A +L +M
Sbjct: 257 --LIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM-- 312
Query: 233 PGFRCPPDVYTYTILISSYCK 253
P + P+V Y ++ C
Sbjct: 313 PSYGLKPNVVCYNTVLKGLCS 333
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
S++ C L EG VN+ + F +K R D YN VI++LC+ ++A
Sbjct: 535 SSIAC---ALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAY 591
Query: 230 MELPGFRCPPDVYTYTILISSYCKYGM 256
M G C P+ TYT+LI G+
Sbjct: 592 MVSNG--CMPNESTYTMLIKGLASEGL 616
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L ++GLV +A+ +M C PD+ +Y+ VI+ L + G +A LL M G
Sbjct: 467 LINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKG 526
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+ Y+ + + + G
Sbjct: 527 IS--PNTIIYSSIACALSREG 545
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ LK+M G + +L++ STV I LG+ G EAL M P+ Y+ +
Sbjct: 482 ELLKQMLVNGCSPDLISYSTV---IDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIA 538
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
AL R G NK + + ++ R D Y +ISS CK
Sbjct: 539 CALSREGRVNKVIQMFDNIKDTTIR--SDAVLYNAVISSLCK 578
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++ L G + +AL M C P Y+V++ A CR G F + +LE M G
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C D +++++ C+ G
Sbjct: 177 --CTLDTGNCNLVLNAICEQG 195
>gi|356534319|ref|XP_003535704.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Glycine max]
Length = 507
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 81 RILKKEADNIANNVLVLGPAAYRNPQKVTLGINK-------ATEFYHWVERFFHFFHNEV 133
RIL + + L PA +P+ V +NK A F+ W E+ F H
Sbjct: 63 RILSTTPASTVDACLAAVPAK-PSPELVLEVLNKLSNAGVLALSFFRWAEKQSEFKHTTE 121
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193
+ + K +W + +M +R +L+T+ T + + + EA+ TF
Sbjct: 122 AFHALIEALGKIRQFKMIWTLVNDMKQR---KLLTSDTFSLVARRYARARKAKEAIKTFE 178
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M+ + +P V +N +++ LC+ + +A + ++M R PD+ +YTIL+ + +
Sbjct: 179 KMEHYGLKPHVSDFNKLVDVLCKSKSVEEAHEVFDKMR--KLRLDPDIKSYTILLEGWSQ 236
>gi|255562047|ref|XP_002522032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538836|gb|EEF40436.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 451
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 76/163 (46%), Gaps = 4/163 (2%)
Query: 93 NVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLW 152
N V +R + + ++ F++W ++ + +E+ + A+ +W
Sbjct: 65 NAPVTSELVFRVLRACSRSPTESLRFFNWSRAYYT--PTSIEYEELIKILAKSKRYSSMW 122
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ +M + +++ TV +I+ G GL+++A+ F + C +V YN ++
Sbjct: 123 KLITQMKDQNPQFSISSETVRSIIEEYGRSGLIDQAVEVFNQCNSLNCEQNVDIYNSLLF 182
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
ALC V F+ A L+ ++ G P+ TY++L++ +C G
Sbjct: 183 ALCEVKLFHGAYALVRRLIRKGL--APNKTTYSVLVNGWCSNG 223
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL+EMS++G V + LI+ L G A ++M + PDV +N +I A
Sbjct: 231 FLEEMSKKGFNPPVRGRDL--LIEGLLNAGYFESAKEMVFKMSKEGFVPDVNTFNCLIEA 288
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+C G + + + GF C PD+ +Y ILI + K G
Sbjct: 289 ICNSGEVDFCVDMYYSLRKLGF-C-PDINSYKILIPAVSKVG 328
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 150 GLWDFLKEMSRRGNGE--LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G ++ KEM + + E + +T CLI+ + G V+ + +Y +++ PD+ +Y
Sbjct: 258 GYFESAKEMVFKMSKEGFVPDVNTFNCLIEAICNSGEVDFCVDMYYSLRKLGFCPDINSY 317
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++I A+ +VG ++A LL G + P + Y +I C+ G
Sbjct: 318 KILIPAVSKVGKIDEAFKLLNNSIEDGHKPFPGL--YAPIIKGMCRRG 363
>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
Length = 833
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
L T T C + LG++ +NEA A +M ++ P V + ++I CR G +
Sbjct: 476 LTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLK 535
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+LE+M+ G C P+VYTYTI+I+ C G
Sbjct: 536 MLERMKQAG--CSPNVYTYTIIINGLCNNG 563
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 11/139 (7%)
Query: 124 RFFHFFHNEVTCKEMGIVFA-------RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLI 176
R F E +C+ + ++ ++ + +EM +G +T T T LI
Sbjct: 184 RVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQP--STRTYTVLI 241
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
K + G+ ++A+ M C P+V+ Y ++I+ LCR G +A + +M G
Sbjct: 242 KAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL- 300
Query: 237 CPPDVYTYTILISSYCKYG 255
P + T+ LI+ YCK G
Sbjct: 301 -CPGIITFNALINGYCKEG 318
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L +M + G V T T+ LI+ G +L RMKQ C P+VY Y ++IN
Sbjct: 501 MLGKMMKYGLVPSVVTHTI--LIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIING 558
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC G +A +L M F P+ +TY +L+ ++ K G
Sbjct: 559 LCNNGRVEEAETILFSM--SSFGVSPNHFTYAVLVKAHVKAG 598
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 185 VNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
+ EA F +M K+ CRP+ Y+++I+ LC G +A L ++M G C P T
Sbjct: 179 LGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKG--CQPSTRT 236
Query: 244 YTILISSYCKYGM 256
YT+LI + C GM
Sbjct: 237 YTVLIKAKCDIGM 249
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI +EG V A M++ C+P++ YN ++ LCRV KA LL ++
Sbjct: 306 TFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRV 365
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PD TY IL+ +CK G
Sbjct: 366 VDNGL--LPDRVTYNILVDGFCKEG 388
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG L T L+ +EG +N A F M PD + + +I+ LC++G +
Sbjct: 368 NGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQ 427
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A +L M G D T+T LI +CK G
Sbjct: 428 ANGILGSMVKKGI--SLDEVTFTALIDGHCKIG 458
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L EG + EA F +M + P + +N +IN C+ G A LL M
Sbjct: 271 TYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVM 330
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E C P++ TY L+ C+
Sbjct: 331 EKG--NCKPNIRTYNELMEGLCR 351
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + G + F M + RC + +N ++AL + N+A +L +M
Sbjct: 446 TFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKM 505
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P V T+TILI +C+ G
Sbjct: 506 MKYGL--VPSVVTHTILIEGHCRAG 528
>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
EFFECT EMBRYO ARREST 40; Flags: Precursor
gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 754
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V+ +F++EMS + +G T L+ L + G V A+ M Q
Sbjct: 269 FCKEGRVEDALNFIQEMSNQ-DGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYD 327
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDVY YN VI+ LC++G +A +L+QM C P+ TY LIS+ CK
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEVLDQM--ITRDCSPNTVTYNTLISTLCK 377
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ F M+ C PD + YN++I++LC G ++A +L+QMEL G C V TY L
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG--CARSVITYNTL 476
Query: 248 ISSYCK 253
I +CK
Sbjct: 477 IDGFCK 482
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
F + N + + EM G V+ ++VT LI L + V +A +M
Sbjct: 480 FCKANKTREAEEIFDEMEVHG----VSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEG 535
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD Y YN ++ CR G+ KA +++ M G C PD+ TY LIS CK G
Sbjct: 536 QKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG--CEPDIVTYGTLISGLCKAG 589
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMK-QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+V ++ +EG V +AL M Q PD Y +N ++N LC+ G+ A +++
Sbjct: 261 SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDV 320
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M G+ PDVYTY +IS CK G
Sbjct: 321 MLQEGY--DPDVYTYNSVISGLCKLG 344
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI L +E V EA + PDV +N +I LC N A L E
Sbjct: 365 TVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFE 424
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M G C PD +TY +LI S C G
Sbjct: 425 EMRSKG--CEPDEFTYNMLIDSLCSKG 449
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M + +PDV +NV+I ALCR A +LE M P + PD T+T ++ Y +
Sbjct: 179 KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDM--PSYGLVPDEKTFTTVMQGYIE 236
Query: 254 YG 255
G
Sbjct: 237 EG 238
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 139 GIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
G+ R + V + +EM R G T LI L +G ++EAL +M+
Sbjct: 409 GLCLTRNHRVA--MELFEEM--RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS 464
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C V YN +I+ C+ +A + ++ME+ G + TY LI CK
Sbjct: 465 GCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGV--SRNSVTYNTLIDGLCK 517
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQ 229
T T +++ EEG ++ AL +M +F C + NV+++ C+ G A F+ E
Sbjct: 226 TFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM 285
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
GF PD YT+ L++ CK G
Sbjct: 286 SNQDGFF--PDQYTFNTLVNGLCKAG 309
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ LK+M G V T LI + EA F M+ + YN +I+
Sbjct: 456 NMLKQMELSGCARSVITYNT--LIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLID 513
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ A L++QM + G + PD YTY L++ +C+ G
Sbjct: 514 GLCKSRRVEDAAQLMDQMIMEGQK--PDKYTYNSLLTHFCRGG 554
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + +A M C PD+ Y +I+ LC+ G A LL +++ G P Y
Sbjct: 554 GDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAY 613
Query: 243 TYTI 246
I
Sbjct: 614 NPVI 617
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 136 KEMGIVFARGNNVKGLWDFLKEM--SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF- 192
+E+ + R + + L++M SR G TST LI+ + L +E L+
Sbjct: 87 EEILLRLGRSGSFDDMKKILEDMKSSRCEMG----TSTFLILIESYAQFELQDEILSVVD 142
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ + +F +PD + YN ++N L + +M + G + PDV T+ +LI + C
Sbjct: 143 WMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIK--PDVSTFNVLIKALC 200
Query: 253 K 253
+
Sbjct: 201 R 201
>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
Length = 773
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 14/200 (7%)
Query: 67 GRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTL-----GINKATEFYHW 121
G R + I K+ +AN +L P+ P V G+ A +
Sbjct: 281 GCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEA 340
Query: 122 VERFFHFFH-----NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLI 176
E F ++VT + F + V + + L++M G V T T +I
Sbjct: 341 EELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTT--VI 398
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
+EGL++EA+ M C+P+ +Y +V+ LC G + A L+ QM G
Sbjct: 399 NGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG-- 456
Query: 237 CPPDVYTYTILISSYCKYGM 256
CPP+ T+ LI+ CK G+
Sbjct: 457 CPPNPVTFNTLINFLCKKGL 476
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
+ G + T ++ + E+G V+EA+ ++ F C D+ +YN V+ LC
Sbjct: 171 AMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAK 230
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ L+++M C P++ T+ LI C+ G+
Sbjct: 231 RWGDVEELMDEM--VRVDCAPNIVTFNTLIGYLCRNGL 266
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 174 CLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
C+ K G+ E L++E M + C P++ +N +I LCR G F + +L QM
Sbjct: 227 CMAKRWGDVEELMDE-------MVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE 279
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C PD+ Y +I CK G
Sbjct: 280 HG--CTPDIRMYATIIDGICKEG 300
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 149 KGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
+GL D LK MS G T + T ++K L G +A +M Q C P+
Sbjct: 404 EGLIDEAVMLLKSMSSCGCKP--NTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNP 461
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+N +IN LC+ G +A LL+QM + G C PD+ +Y+ +I K G
Sbjct: 462 VTFNTLINFLCKKGLVEQAIELLKQMLVNG--CSPDLISYSTVIDGLGKAG 510
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 14/201 (6%)
Query: 55 IPRFFFQSPRSIGRQTGFRHRTPLKQRILKKEAD-NIANNVLVLGPAAYRNPQKVTLGIN 113
IP + + R GFR+ + + + K + N LVL + +G+
Sbjct: 145 IPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLL 204
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFA-RGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
+ F+ + N V G+ A R +V+ L D + + N +VT +T
Sbjct: 205 RKLAFFGCEADIVSY--NAVL---KGLCMAKRWGDVEELMDEMVRVDCAPN--IVTFNT- 256
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
LI L GL +M + C PD+ Y +I+ +C+ G+ A +L +M
Sbjct: 257 --LIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM-- 312
Query: 233 PGFRCPPDVYTYTILISSYCK 253
P + P+V Y ++ C
Sbjct: 313 PSYGLKPNVVCYNTVLKGLCS 333
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
+ S++ C L EG VN+ + F +K R D YN VI++LC+ ++A
Sbjct: 532 IIYSSIAC---ALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDF 588
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGM 256
M G C P+ TYT+LI G+
Sbjct: 589 FAYMVSNG--CMPNESTYTMLIKGLASEGL 616
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L ++GLV +A+ +M C PD+ +Y+ VI+ L + G +A LL M G
Sbjct: 467 LINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKG 526
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+ Y+ + + + G
Sbjct: 527 IS--PNTIIYSSIACALSREG 545
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ LK+M G + +L++ STV I LG+ G EAL M P+ Y+ +
Sbjct: 482 ELLKQMLVNGCSPDLISYSTV---IDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIA 538
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
AL R G NK + + ++ R D Y +ISS CK
Sbjct: 539 CALSREGRVNKVIQMFDNIKDTTIR--SDAVLYNAVISSLCK 578
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++ L G + +AL M C P Y+V++ A CR G F + +LE M G
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C D +++++ C+ G
Sbjct: 177 --CTLDTGNCNLVLNAICEQG 195
>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Brachypodium distachyon]
Length = 597
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 105 PQKVTLGINKATEFYHWVERF---FHFFH-----------NEVTCKEMGIVFARGNNVKG 150
P VTL N WV R FF N VT + F NNV
Sbjct: 279 PNAVTL--NTIVGGLCWVGRVGAALEFFREKRTVWPEARGNAVTYSTLVGAFLHTNNVGV 336
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+ EM GN +I L + G +++A + MK+ + D AYN++
Sbjct: 337 AMELFHEMVDEGNSP--DAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNIL 394
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I CR N+A LL +M+ G + PDVYTY L+S CK G
Sbjct: 395 IGGFCRRKRLNEAYELLGEMKEAGLQ--PDVYTYNTLLSGLCKAG 437
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+NEA MK+ +PDVY YN +++ LC+ G+F LL +M G C P V T+
Sbjct: 404 LNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGG--CRPSVVTF 461
Query: 245 TILISSYCKYG 255
LI YCK G
Sbjct: 462 GTLIHGYCKVG 472
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
TS L+ L + G + F M+ RP+V Y +++ LC+ G A +L+
Sbjct: 137 TSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKAGRVGDALSVLD 196
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
M P PDV ++ CK G
Sbjct: 197 GMSGPESDVCPDVVMLNNIVDGLCKTG 223
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 141 VFARGNNVKG---LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK- 196
A+ ++ G L+ +++ S R N T L+K L + G V +AL+ M
Sbjct: 146 ALAQAGDLPGMTQLFASMRDASVRPN-----VVTYGILVKGLCKAGRVGDALSVLDGMSG 200
Query: 197 -QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ PDV N +++ LC+ G +A +E+ C P+ TY L ++C+ G
Sbjct: 201 PESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTVTYNCLAHAFCRAG 260
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F R + ++ L EM G ++ T +T+ + G+ V+E L +M C
Sbjct: 398 FCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLG---KMIDGGC 454
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
RP V + +I+ C+VG ++A + M+ G + P+ Y LI CK
Sbjct: 455 RPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQ--PNTVIYNTLIDFLCK 505
>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK + + GLV+ A+ F M +C PDV+ Y +++ LC+ ++A LL++M++ G
Sbjct: 194 VIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEG 253
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P T+ +LI+ CK G
Sbjct: 254 --CFPSSVTFNVLINGLCKKG 272
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+G +V G+ L + RG+ + LI L +E EA+ + +M + C+P+
Sbjct: 341 QGRSVDGV-HLLSSLEERGHH--ANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPN 397
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ Y+ +I+ LCR G ++A+ +L +M G C P+ +TY+ LI + K G
Sbjct: 398 IVVYSALIDGLCREGKLDEAKEILCEMVNKG--CTPNAFTYSSLIKGFFKTG 447
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 142 FARGNNVKGL--WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F GN+ K + W KEM++ N + + LI L E+G + EA+ + M
Sbjct: 444 FKTGNSQKAIRVW---KEMAK--NNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRG 498
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
RPDV AY+ +I+ LC G+ L +M PDV TY IL+ + CK
Sbjct: 499 LRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCK 552
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMK---QFRCRPDVYAYNVVINALCRVGNFNKAR 224
T + ++ V+ +EGL + AL FY + P+V ++N+VI A+C++G ++A
Sbjct: 150 TVRSFNSVLNVIIQEGLFHRAL-EFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAI 208
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ +M + +C PDV+TY L+ CK
Sbjct: 209 EVFREMAIQ--KCEPDVFTYCTLMDGLCK 235
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L +E ++EA+ M+ C P +NV+IN LC+ G+ + L++ M
Sbjct: 225 TYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNM 284
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L G C P+ TY +I+ C G
Sbjct: 285 FLKG--CVPNEVTYNTIINGLCLKG 307
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LIK + G +A+ + M + C P+ Y+V+I+ LC G +A + M
Sbjct: 435 TYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHM 494
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G R PDV Y+ +I C G
Sbjct: 495 LGRGLR--PDVVAYSSMIHGLCNAG 517
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ GLW K+M +G + + LI L EG ++EA M C P+
Sbjct: 378 KSEEAMGLW---KKMVEKGCQPNIVVYSA--LIDGLCREGKLDEAKEILCEMVNKGCTPN 432
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ Y+ +I + GN KA + ++M C P+ Y++LI C+ G
Sbjct: 433 AFTYSSLIKGFFKTGNSQKAIRVWKEM--AKNNCVPNEICYSVLIHGLCEDG 482
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+ YN +IN LC G +KA LL++M +C P+ TY LI+ K G
Sbjct: 289 CVPNEVTYNTIINGLCLKGKLDKAVSLLDRM--VASKCVPNDVTYGTLINGLVKQG 342
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 175 LIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
+ + G+ L +A+ F RM +F+CR V ++N V+N + + G F++A E
Sbjct: 121 VFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGG 180
Query: 234 GFRCPPDVYTYTILISSYCKYGM 256
P+V ++ ++I + CK G+
Sbjct: 181 KTNISPNVLSFNLVIKAMCKLGL 203
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 175 LIKVLGEEGLVNEALATFYRM--KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+I L G V L F M ++ +PDV YN+++ ALC+ + + A LL M
Sbjct: 509 MIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLD 568
Query: 233 PGFRCPPDVYTYTILISS 250
G C PD+ T I +++
Sbjct: 569 RG--CNPDLITCNIFLNA 584
>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 580
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 160 RRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
RRG + +VT +T LIK L E ++EA F RM++ C PDV Y +I LC G
Sbjct: 132 RRGYSPNIVTYNT---LIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTG 188
Query: 219 NFNKARFLLEQM--ELPGFR--CPPDVYTYTILISSYCKYG 255
N N A L ++M ++ + C P+V TY I++ CK G
Sbjct: 189 NINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVG 229
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L +EG V EA M + PD+ YN +I C VG+ N AR L M
Sbjct: 262 TFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSM 321
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
P C PDV +Y +LI+ Y K
Sbjct: 322 --PSKGCEPDVISYNVLINGYSK 342
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRM------KQFRCRPDVYAYNVVINALCRVGNFNKAR 224
T LIK L G +N AL M + C+P+V YN++++ LC+VG ++A+
Sbjct: 176 TYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAK 235
Query: 225 FLLEQMELPGF--------RCPPDVYTYTILISSYCKYG 255
L E+M+ G PD+ T+ +LI + CK G
Sbjct: 236 QLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEG 274
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ CLI L + G + A F ++ P+V Y ++I+ CR G +KA L+++ME
Sbjct: 438 LNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKME 497
Query: 232 LPGFRCPPDVYTYTILISSY 251
G C PD+ TY L+ +
Sbjct: 498 ANG--CTPDIITYNTLMRGF 515
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
EA+ F +K + ++ N +I+ LC+ G A L E++ G P+V TYTI
Sbjct: 418 EAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHE--PNVVTYTI 475
Query: 247 LISSYCKYG 255
+I +C+ G
Sbjct: 476 MIHGFCREG 484
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD+ +NV+I+ LC+ G +A+ LL M G PD+ TY LI +C G
Sbjct: 257 QPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGI--VPDLVTYNSLIEGFCMVG 309
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +N A F M C PDV +YNV+IN + +A L +M L G R P+V
Sbjct: 309 GDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKR--PNVI 366
Query: 243 TYTILI 248
TY L+
Sbjct: 367 TYDSLL 372
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+ L+ L + E A F + + P++ YN +I LC ++A L +M
Sbjct: 106 TLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRM 165
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G C PDV TY LI C G
Sbjct: 166 QKLG--CTPDVVTYGTLIKGLCGTG 188
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++ W+ +++S G+ V T T+ +I EG V++A +M+ C
Sbjct: 445 LCKAGKLETAWELFEKLSNEGHEPNVVTYTI--MIHGFCREGQVDKANVLIQKMEANGCT 502
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD+ YN ++ + LL +M PD T +I++ K
Sbjct: 503 PDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDV--SPDAITCSIVVDMLSK 552
>gi|15219409|ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79540
gi|4835755|gb|AAD30222.1|AC007202_4 Contains similarity to gi|2827663 F18F4.190 membrane-associated
salt-inducible-like protein from Arabidopsis thaliana
BAC gb|AL021637 [Arabidopsis thaliana]
gi|332198140|gb|AEE36261.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 780
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + N W L+E+ + G V + LI + G+ +A+ +F RMK+F C
Sbjct: 101 MLSEDNGCDLYWQTLEEL--KSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDC 158
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RPDV+ YNV++ + R F F + E+ C P++YT+ IL+ K G
Sbjct: 159 RPDVFTYNVILRVMMREEVFFMLAFAVYN-EMLKCNCSPNLYTFGILMDGLYKKG 212
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI+ L + G + +AL M PD Y YN VI ALC G + R L Q+E+
Sbjct: 342 TILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSL--QLEM 399
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
PD T+TILI S C+ G+
Sbjct: 400 SETESFPDACTHTILICSMCRNGL 423
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 37/122 (30%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + GLV EA F +++ C P V +N +I+ LC+ G +AR LL +M
Sbjct: 410 THTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKM 469
Query: 231 E----------------------------LPGFR---------CPPDVYTYTILISSYCK 253
E L +R PD+ +Y +LI+ +C+
Sbjct: 470 EVGRPASLFLRLSHSGNRSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCR 529
Query: 254 YG 255
G
Sbjct: 530 AG 531
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
E G + +A PD+ +YNV+IN CR G+ + A LL ++L G PD
Sbjct: 494 ESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGL--SPD 551
Query: 241 VYTYTILISSYCKYGMQ 257
TY LI+ + G +
Sbjct: 552 SVTYNTLINGLHRVGRE 568
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
++ ++ L M +G T +IK L GL+ E + M +
Sbjct: 348 LSKAGKIEDALKLLSSMPSKGISP--DTYCYNAVIKALCGRGLLEEGRSLQLEMSETESF 405
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD + ++I ++CR G +A + ++E G C P V T+ LI CK G
Sbjct: 406 PDACTHTILICSMCRNGLVREAEEIFTEIEKSG--CSPSVATFNALIDGLCKSG 457
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L + G ++A FY M+ PD A+N +++ C++G +A LL
Sbjct: 235 TYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLF 294
Query: 231 ELPGF 235
E GF
Sbjct: 295 EKDGF 299
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T CL+ L + +NEAL F MK + P+ Y+++IN LCRV FNKA ++M
Sbjct: 724 TWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEM 783
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G + P+ TYT +I+ K G
Sbjct: 784 QKQGLK--PNTITYTTMIAGLAKAG 806
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V W F E+ + +G L T T +I VL + ++EA+ F +M+Q R
Sbjct: 278 FGKAGKVDMAWKFFHEI--KSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNV 335
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P YAYN +I G F++A LLE+ + G C P V Y +++ K G
Sbjct: 336 PCAYAYNTMIMGYGSAGKFDEAYSLLERQKARG--CIPSVIAYNCILTCLGKKG 387
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M VF G KG F +E+ RG V + ++ LI L + G E FY MK+
Sbjct: 554 MDCVFKAGETGKGRALF-EEIKSRGFIPDVMSYSI--LIHGLVKAGFARETYELFYAMKE 610
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C D +AYN I+ C+ G NKA LLE+M+ G + P V TY +I K
Sbjct: 611 QGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQ--PTVVTYGSVIDGLAK 664
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 160 RRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
++ G + + C++ LG++G + EAL TF MK+ P++ YNV+I+ LC+ G
Sbjct: 364 QKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKK-DAAPNLSTYNVLIDMLCKAGE 422
Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A + + M+ G P+V T I+I CK
Sbjct: 423 VEAAFKVRDAMKEAGLF--PNVMTVNIMIDRLCK 454
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++ A +F+H + + ++VT M V +GN + + ++M + N +
Sbjct: 284 VDMAWKFFHEI-KSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRN--VPCAYA 340
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+I G G +EA + R K C P V AYN ++ L + G +A E+M+
Sbjct: 341 YNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMK 400
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
P++ TY +LI CK G
Sbjct: 401 KDA---APNLSTYNVLIDMLCKAG 421
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ NG + + LI G+ G ++EA + Q P+VY +N +++AL +
Sbjct: 679 KSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEI 738
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N+A + M+ + P+ TY+ILI+ C+
Sbjct: 739 NEALVCFQNMK--NLKGTPNHITYSILINGLCR 769
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G V+ T +I+V EG ++ AL+ MK D+ YNV I+ + G + A
Sbjct: 228 GYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMA 287
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+++ G PD TYT +I CK
Sbjct: 288 WKFFHEIKSHGL--LPDDVTYTSMIGVLCK 315
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
VFAR + L EM + N I G+ G V+ A F+ +K
Sbjct: 242 VFAREGRLDAALSLLDEM--KSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGL 299
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y +I LC+ ++A + EQME R P Y Y +I Y G
Sbjct: 300 LPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQN--RNVPCAYAYNTMIMGYGSAG 352
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LIK + G + F M C PD+ N ++ + + G K R L E+++
Sbjct: 516 TSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKS 575
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
GF PDV +Y+ILI K G
Sbjct: 576 RGF--IPDVMSYSILIHGLVKAG 596
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEM--GIVFARGNNVKGLWDF----LKEMSRRGNGE 165
+N+A ++ W ER ++ C E ++ NVK +D+ L EMS G G
Sbjct: 108 VNQAISYFRWTERK----TDQALCPEAYDSLLLVMAKNVK--FDYFEQILGEMSIAGFG- 160
Query: 166 LVTTSTVTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
ST TC+ +L + + E M++F+ RP AY +I AL V +
Sbjct: 161 ---PSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIM 217
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L QM+ G+ V+ +T +I + + G
Sbjct: 218 LTLFHQMQELGYEVS--VHLFTTVIRVFAREG 247
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
ST LI +L + G V A MK+ P+V N++I+ LC+ ++A + E
Sbjct: 408 STYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEG 467
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M C PD T+ LI K G
Sbjct: 468 MNHK--ICSPDEVTFCSLIDGLGKQG 491
>gi|302769103|ref|XP_002967971.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
gi|300164709|gb|EFJ31318.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
Length = 1354
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
++++R V+ L+EM + GN + ST T LI G +A F + +
Sbjct: 853 MLYSRNQMVQEAQALLREMIKTGNAPNI--STYTTLISAYGRLQAYEDAELVFKSIAETG 910
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+PD AYNV+IN + G K ++EQM+ GF P + T +L+ SY K G
Sbjct: 911 CKPDATAYNVMINVYRKAGEHRKIEEVIEQMKADGFE--PSLTTIHMLMDSYGKGG 964
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ G + T T LI LG+ G VNEA A F M + + RP + A++ +I A + F
Sbjct: 317 KEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMF 376
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ A M G R PD+ Y++++ + K M
Sbjct: 377 SDAEHTYSCMLRAGVR--PDLLAYSVMLDVFFKAEM 410
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLG--EEGLVNEALATFYRMKQF 198
V+AR + + L M RG + T + + G +EGL + L Y
Sbjct: 123 VYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAAG-- 180
Query: 199 RCRPDVYAYNVVINALCRVGN-FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RPD YN +I+A C + N + A + E+M+ G C PD++TY +IS Y + G
Sbjct: 181 -LRPDTITYNTLISA-CSLNNRLSDAILIFEEMQRQG--CDPDIWTYNAMISVYGRAG 234
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+EM R+G + T +I V G G V A + F M++ PD YN V++A
Sbjct: 207 IFEEMQRQGCDPDIWT--YNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHA 264
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
R G + + M RC D TY +I Y K GM
Sbjct: 265 FARDGRIEEVERIRGMMR--DARCSSDEITYNTMIHMYGKAGMH 306
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI +++A+ F M++ C PD++ YN +I+ R G A +
Sbjct: 185 TITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFR 244
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
M+ GF PD TY ++ ++ + G
Sbjct: 245 IMQEQGF--TPDAVTYNSVLHAFARDG 269
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG-NFNKARFLLEQMELP 233
L+ V G N RM+ CRPD+ +N+VI A R G A LL+ +
Sbjct: 120 LMSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAA 179
Query: 234 GFRCPPDVYTYTILISS 250
G R PD TY LIS+
Sbjct: 180 GLR--PDTITYNTLISA 194
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSR--RGNGELVTTSTVTCLIKVLGEEGLV 185
F + VT + FAR ++ + + ++ M R R + + +T +T +I + G+ G+
Sbjct: 251 FTPDAVTYNSVLHAFARDGRIEEV-ERIRGMMRDARCSSDEITYNT---MIHMYGKAGMH 306
Query: 186 NEALATFYRMKQ-FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+A + +MK+ RC PD + V+I+ L + G N+A + E M R P + +
Sbjct: 307 RKAEELYVQMKEEGRC-PDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVR--PTLQAF 363
Query: 245 TILISSYCKYGM 256
+ +I +Y K M
Sbjct: 364 SAMICAYAKADM 375
>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
[Vitis vinifera]
gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 168 TTSTVTCLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
+ +++ LIK L + G ++ AL F M C PD Y Y +IN LCR+G +A+ L
Sbjct: 154 SVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKEL 213
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCK 253
++ME C P V TYT LI C+
Sbjct: 214 FKEMETKA--CSPTVVTYTSLIHGLCQ 238
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+EM RG + T LI L G + EA F M+ C P V Y +I+
Sbjct: 178 IFREMPNRGCPP--DSYTYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHG 235
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
LC+ + + A LLE+M G + P+V+TY+ L+ +CK G +
Sbjct: 236 LCQSKDLDSAIRLLEEMASKGIK--PNVFTYSSLMDGHCKSGCSS 278
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYR-MKQFRCRPDVYAYNVVINALCR-VGNFNKARFLL 227
S +T ++GE L + FYR M++ P V + NV+I ALC+ G + A +
Sbjct: 122 SYITVFAILVGENQL--KLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIF 179
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M P CPPD YTY LI+ C+ G
Sbjct: 180 REM--PNRGCPPDSYTYGTLINGLCRLG 205
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
+SRR ++T ST L+ L +EG + EA+ RMK RPD Y +I+ C +
Sbjct: 288 VSRRHLPNMITYST---LVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDI 344
Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTI 246
F++A L++M L G P+ T+++
Sbjct: 345 CKFHEAANFLDEMVLGGI--SPNRLTWSL 371
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+EM+ +G V T + L+ + G + AL M R P++ Y+ +++
Sbjct: 248 LLEEMASKGIKPNVFT--YSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHG 305
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
LC+ G +A +L++M+L G R PD Y +IS +C
Sbjct: 306 LCKEGKLQEAVEILDRMKLQGLR--PDAGLYGKIISGFC 342
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ KEM + T T T LI L + ++ A+ M +P+V+ Y+ +++
Sbjct: 212 ELFKEMETKACSP--TVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMD 269
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ G ++A LL+ M R P++ TY+ L+ CK G
Sbjct: 270 GHCKSGCSSRALELLDMM--VSRRHLPNMITYSTLVHGLCKEG 310
>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Vitis vinifera]
Length = 879
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 8/148 (5%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKE---MGIVFARGNNVKGLWDFLKEMSRRGNGELVT 168
+ KA E Y++V + + +F + + C M + R + L+D + E+ G G+
Sbjct: 145 VEKALELYYFVLKTYTYFPDVIACNSLLNMLVKLGRIEIARKLYDEMLEID--GAGDRCV 202
Query: 169 TSTVTC-LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+ TC ++K L +EG + E C P++ YN +I+ C+ G+ A L
Sbjct: 203 DNYSTCIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLF 262
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+++L GF P V TY +I+ +CK G
Sbjct: 263 IELKLKGFL--PTVETYGAIINGFCKKG 288
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + K + L EM+ RG V +I + G + +A+ T M + C+
Sbjct: 284 FCKKGDFKAIDRLLMEMNSRG--LTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCK 341
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ YN +I+ CR G ++A LLEQ G P+ ++YT LI +YCK G
Sbjct: 342 PDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLM--PNKFSYTPLIHAYCKQG 393
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++ A F M + +C+P+V Y +IN CR G+ +++ + +M+ G P+V TY
Sbjct: 570 LDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGL--VPNVVTY 627
Query: 245 TILISSYCK 253
+ILI S+CK
Sbjct: 628 SILIGSFCK 636
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK + G++ +A+A RMK+ PD + Y+ VI+ + + + A+ + +M
Sbjct: 525 MIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREM--VK 582
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+C P+V TYT LI+ +C+ G
Sbjct: 583 MKCKPNVVTYTSLINGFCRKG 603
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFY 193
CK+ G + R +N +L EM+ RG+ +LVT + + V GE V+ AL
Sbjct: 390 CKQGG--YDRASN------WLIEMTERGHKPDLVTYGALVHGLVVAGE---VDVALTIRE 438
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M + PD YN++++ LC+ A+ LL +M PD + Y L+ + +
Sbjct: 439 KMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVL--PDAFVYATLVDGFIR 496
Query: 254 YG 255
G
Sbjct: 497 NG 498
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD + Y +++ R GN ++AR L E G P + Y +I YCK+GM
Sbjct: 482 PDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMN--PGIVGYNAMIKGYCKFGM 534
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 4/129 (3%)
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186
H +E T + + + +++ G +EM + V T T LI +G ++
Sbjct: 549 HLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVT--YTSLINGFCRKGDLH 606
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+L F M+ P+V Y+++I + C+ A E+M + +C P+ T+
Sbjct: 607 RSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMN--KCVPNDVTFNY 664
Query: 247 LISSYCKYG 255
L++ + K G
Sbjct: 665 LVNGFSKNG 673
>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Vitis vinifera]
Length = 644
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK + + GLV+ A+ F M +C PDV+ Y +++ LC+ ++A LL++M++ G
Sbjct: 178 VIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEG 237
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P T+ +LI+ CK G
Sbjct: 238 --CFPSSVTFNVLINGLCKKG 256
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+G +V G+ L + RG+ + LI L +E EA+ + +M + C+P+
Sbjct: 325 QGRSVDGV-HLLSSLEERGHH--ANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPN 381
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ Y+ +I+ LCR G ++A+ +L +M G C P+ +TY+ LI + K G
Sbjct: 382 IVVYSALIDGLCREGKLDEAKEILCEMVNKG--CTPNAFTYSSLIKGFFKTG 431
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 142 FARGNNVKGL--WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F GN+ K + W KEM++ N + + LI L E+G + EA+ + M
Sbjct: 428 FKTGNSQKAIRVW---KEMAK--NNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRG 482
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
RPDV AY+ +I+ LC G+ L +M PDV TY IL+ + CK
Sbjct: 483 LRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCK 536
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMK---QFRCRPDVYAYNVVINALCRVGNFNKAR 224
T + ++ V+ +EGL + AL FY + P+V ++N+VI A+C++G ++A
Sbjct: 134 TVRSFNSVLNVIIQEGLFHRALE-FYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAI 192
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ +M + +C PDV+TY L+ CK
Sbjct: 193 EVFREMAIQ--KCEPDVFTYCTLMDGLCK 219
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L +E ++EA+ M+ C P +NV+IN LC+ G+ + L++ M
Sbjct: 209 TYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNM 268
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L G C P+ TY +I+ C G
Sbjct: 269 FLKG--CVPNEVTYNTIINGLCLKG 291
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LIK + G +A+ + M + C P+ Y+V+I+ LC G +A + M
Sbjct: 419 TYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHM 478
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G R PDV Y+ +I C G
Sbjct: 479 LGRGLR--PDVVAYSSMIHGLCNAG 501
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ GLW K+M +G + + LI L EG ++EA M C P+
Sbjct: 362 KSEEAMGLW---KKMVEKGCQPNIVVYSA--LIDGLCREGKLDEAKEILCEMVNKGCTPN 416
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ Y+ +I + GN KA + ++M C P+ Y++LI C+ G
Sbjct: 417 AFTYSSLIKGFFKTGNSQKAIRVWKEM--AKNNCVPNEICYSVLIHGLCEDG 466
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+ YN +IN LC G +KA LL++M +C P+ TY LI+ K G
Sbjct: 273 CVPNEVTYNTIINGLCLKGKLDKAVSLLDRM--VASKCVPNDVTYGTLINGLVKQG 326
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 175 LIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
+ + G+ L +A+ F RM +F+CR V ++N V+N + + G F++A E
Sbjct: 105 VFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGG 164
Query: 234 GFRCPPDVYTYTILISSYCKYGM 256
P+V ++ ++I + CK G+
Sbjct: 165 KTNISPNVLSFNLVIKAMCKLGL 187
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 175 LIKVLGEEGLVNEALATFYRM--KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+I L G V L F M ++ +PDV YN+++ ALC+ + + A LL M
Sbjct: 493 MIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLD 552
Query: 233 PGFRCPPDVYTYTILISS 250
G C PD+ T I +++
Sbjct: 553 RG--CNPDLITCNIFLNA 568
>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g12775, mitochondrial-like [Glycine max]
Length = 750
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I L +E +V+EA++ F MK PD+ Y +I+ LC+ + +A L ++M
Sbjct: 345 TYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKM 404
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G + PDVY+YTIL+ + CK G
Sbjct: 405 KEQGIQ--PDVYSYTILLDALCKGG 427
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L ++ V+EA++ F MK P++ Y +I+ALC+ + +A LL++M+
Sbjct: 580 TIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKE 639
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G + PDVY+YTIL+ CK G
Sbjct: 640 HGIQ--PDVYSYTILLDGLCKSG 660
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L + + A+A MK+ +PDVY+Y ++++ LC+ G A+ + +++
Sbjct: 613 TYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRL 672
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
+ G+ +V YT +I+ CK G+
Sbjct: 673 LVKGYHL--NVQVYTAMINELCKAGL 696
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L + + A+A +MK+ +PDVY+Y ++++ALC+ G A+ +++
Sbjct: 380 TYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRL 439
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ G+ +V TY ++I+ CK
Sbjct: 440 LVKGYHL--NVQTYNVMINGLCK 460
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 184 LVNE---ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
LVNE A FY M Q P+V Y ++I+ LC+ ++A L E+M+ P+
Sbjct: 553 LVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMF--PN 610
Query: 241 VYTYTILISSYCK 253
+ TYT LI + CK
Sbjct: 611 IVTYTSLIDALCK 623
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT + F ++K + L EM + N ++ T +T LI LG+EG + A
Sbjct: 237 NVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNT---LIDALGKEGKMKAAK 293
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
M + +PDV YN +I+ + A+++ M G P+V TYT +I
Sbjct: 294 IVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGV--TPNVRTYTTMID 351
Query: 250 SYCKYGM 256
CK M
Sbjct: 352 GLCKEKM 358
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186
+ F N VT + + ++++ LKEM G V + T+ L+ L + G +
Sbjct: 606 NMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTI--LLDGLCKSGRLE 663
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
A F R+ +V Y +IN LC+ G F++A L +ME G C PD T+ I
Sbjct: 664 GAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKG--CMPDAVTFDI 721
Query: 247 LI 248
+I
Sbjct: 722 II 723
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V A FY M Q P+V Y +I+ LC+ ++A L E+M+ PD+ TY
Sbjct: 324 VKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNM--IPDIVTY 381
Query: 245 TILISSYCK 253
T LI CK
Sbjct: 382 TSLIDGLCK 390
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
K+M +G V + T+ L+ L + G + A F R+ +V YNV+IN LC
Sbjct: 402 KKMKEQGIQPDVYSYTI--LLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLC 459
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+ F +A L +ME G C PD T+ +I +
Sbjct: 460 KADLFGEAMDLKSKMEGKG--CMPDAITFKTIICA 492
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G +++ +PDV YN +I++LC+ A L +M + G
Sbjct: 174 LINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKG 233
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+V TY L+ +C G
Sbjct: 234 I--SPNVVTYNALVYGFCIMG 252
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L + L+ +A + M P+V YN ++ C +G+ +A LL +M+L
Sbjct: 209 IIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKN 268
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PDV T+ LI + K G
Sbjct: 269 IN--PDVCTFNTLIDALGKEG 287
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+ LIK L G + +AL ++ + + +Y +IN LC+ G LL ++
Sbjct: 135 TLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARLLRKL 194
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E G PDV Y +I S CK
Sbjct: 195 E--GHSVKPDVVMYNTIIHSLCK 215
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALAT-FYRMKQF 198
F + +K + K M+ +G ++VT ST+ I L + G V EAL F++M +
Sbjct: 87 AFCKETKMKEAMELFKTMAEKGFEPDVVTYSTI---ISGLCKTGKVTEALEMLFHKMIER 143
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C + AYN +IN LC+ N +A LLE+M G+ PD TY ++S C+ G
Sbjct: 144 GCSANTVAYNALINGLCKDENIERAYKLLEEMASKGY--VPDNITYNTILSGLCRMG 198
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R V L+EMS+ G V T + L+ L + LV++A F M C PD
Sbjct: 301 RAKKVDDAHKVLEEMSKIGAVPDVVTYNI--LLDGLCKTNLVDKAHELFSTMVDNGCAPD 358
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +Y+VV+N LC+ + AR L ++M + PDV T+ IL+ CK G
Sbjct: 359 IVSYSVVLNGLCKTNKVHDARVLFDRM--IERKLVPDVVTFNILMDGLCKAG 408
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI ++G V+EA + M P +Y YN ++NA C+ +A L + M G
Sbjct: 49 LIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKG 108
Query: 235 FRCPPDVYTYTILISSYCKYGMQT 258
F PDV TY+ +IS CK G T
Sbjct: 109 FE--PDVVTYSTIISGLCKTGKVT 130
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++A F RM + + PDV +N++++ LC+ G ++A+ LL+QM G C PD Y
Sbjct: 375 VHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSG--CAPDYVAY 432
Query: 245 TILISSYCKYG 255
L++ K G
Sbjct: 433 NTLMNGLRKQG 443
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T ++ L + ++EA F +M C P+ Y++V++ CR + A
Sbjct: 249 GYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDA 308
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+LE+M G PDV TY IL+ CK
Sbjct: 309 HKVLEEMSKIG--AVPDVVTYNILLDGLCK 336
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T ++K ++G + + F +M PD YN++I+ + G ++A L E+M
Sbjct: 10 TFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEM 69
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G P +YTY L++++CK
Sbjct: 70 VSVGLE--PSIYTYNSLLNAFCK 90
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQ 229
T L+ +E + EA+ F M + PDV Y+ +I+ LC+ G +A L +
Sbjct: 80 TYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHK 139
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
M G C + Y LI+ CK
Sbjct: 140 MIERG--CSANTVAYNALINGLCK 161
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+ Y + VV+ + C+ G L EQM G PD Y ILI Y K G
Sbjct: 3 ECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGI--SPDGIEYNILIDGYAKKG 57
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 10/144 (6%)
Query: 111 GINKATEFYHWVERFFHFF------HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG 164
G+ K + +E FH N V + + N++ + L+EM+ +G
Sbjct: 122 GLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGY- 180
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
+ T ++ L G V+EA F M PDV AYN +++AL + G ++A
Sbjct: 181 -VPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAM 239
Query: 225 FLLEQMELPGFRCPPDVYTYTILI 248
L + + G+ PD TY ++
Sbjct: 240 KLFKDVIAKGYM--PDTVTYNSIL 261
>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
gi|224030695|gb|ACN34423.1| unknown [Zea mays]
gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
Length = 756
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T+T LI L + + EAL + PDVY +N++INALC+VG+ +
Sbjct: 365 GCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLG 424
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L E+M+ G C PD TY ILI C G
Sbjct: 425 IRLFEEMKSSG--CAPDEVTYNILIDHLCSMG 454
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ N ++ D +E++ +G V T + LI L + G + + F MK
Sbjct: 378 VALCSQNRLEEALDLARELTVKGLSPDVYTFNI--LINALCKVGDPHLGIRLFEEMKSSG 435
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C PD YN++I+ LC +G A LL++ME G CP TY +I + CK
Sbjct: 436 CAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNG--CPRSTVTYNTIIDALCK 487
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L + G ++EA +M C PD +N +I ALC +A L ++
Sbjct: 337 TYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLAREL 396
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G PDVYT+ ILI++ CK G
Sbjct: 397 TVKGL--SPDVYTFNILINALCKVG 419
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D LKEM NG +T T +I L ++ + EA F +M +N +I+
Sbjct: 461 DLLKEME--SNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLID 518
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ + A L+EQM G + P TY +++ YCK G
Sbjct: 519 GLCKAKRIDDATELIEQMVKEGLQ--PSNITYNSILTHYCKQG 559
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L + G V+ AL M Q PDV+ YN VIN L + G ++A+ ++ QM
Sbjct: 302 TYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQM 361
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
G C PD T+ LI + C
Sbjct: 362 VDRG--CLPDTTTFNTLIVALC 381
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 4/123 (3%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
VT + R + V+ L+EMS +T T L++ EEG + AL
Sbjct: 196 VTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAP--DETTFTTLMQGFIEEGSIEAALRVK 253
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+M + C P NV+IN C++G A +++ GF PD TY + C
Sbjct: 254 TKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFE--PDQVTYNTFVHCLC 311
Query: 253 KYG 255
+ G
Sbjct: 312 QNG 314
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + ++K D L+ M+ NG + T LI L + G AL M+ R
Sbjct: 555 YCKQGDLKKAADILETMT--ANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIR 612
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P AYN VI +L R N A L +M G PPD TY I+ C+ G
Sbjct: 613 PTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGE--PPDALTYKIVFRGLCRGG 664
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 16/126 (12%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEAL 189
+ CK+M I A + +M G ++ S VT LI L + +++A
Sbjct: 483 DALCKQMRIEEAE--------EVFDQMDAHG----ISRSAVTFNTLIDGLCKAKRIDDAT 530
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
+M + +P YN ++ C+ G+ KA +LE M GF DV TY LI+
Sbjct: 531 ELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEI--DVVTYGTLIN 588
Query: 250 SYCKYG 255
CK G
Sbjct: 589 GLCKAG 594
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G T+ L+ VL E + + + M +PDV N +I ALCR A
Sbjct: 155 GVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTA 214
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+LE+M PD T+T L+ + + G
Sbjct: 215 VLMLEEM--SSHAVAPDETTFTTLMQGFIEEG 244
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T TV LI + G V +AL + PD YN ++ LC+ G+ + A ++
Sbjct: 264 TRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVM 323
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+ M G PDV+TY +I+ K G
Sbjct: 324 DLMLQEGH--DPDVFTYNTVINCLSKNG 349
>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Cucumis sativus]
Length = 786
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 101/262 (38%), Gaps = 43/262 (16%)
Query: 26 VPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTP-------- 77
V FD+ LA P + + L+ P+ + + G Q GFRH T
Sbjct: 121 VLFDSALA--------PIWVSKILLGLREDPKLALKFFKWAGSQVGFRHTTESYCIIVHL 172
Query: 78 -LKQRILKKEADN----IANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNE 132
+ R+ D I N+ + +G + N + F F
Sbjct: 173 VFRARMYTDAHDTVKEVIMNSRMDMGFPVCNIFDMLWSTRNICVSGSGVFDVLFSVFVEL 232
Query: 133 VTCKEMGIVFARGNNVKGLWD------FLKEMSRRGNGELV--------------TTSTV 172
+E F+R N + L L +S+ GNG+LV + T
Sbjct: 233 GLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTY 292
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+I L +EG + + F +M++ PDV YN +I+ +VG+ + L +M+
Sbjct: 293 NVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKD 352
Query: 233 PGFRCPPDVYTYTILISSYCKY 254
G C PD+ TY LI+ YCK+
Sbjct: 353 VG--CVPDIITYNGLINCYCKF 372
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI G+ G + E + F MK C PD+ YN +IN C+ +A +M
Sbjct: 326 TYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEM 385
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
+ G + P+V TY+ LI ++CK GM
Sbjct: 386 KNNGLK--PNVVTYSTLIDAFCKEGM 409
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+++ EM + NG T + LI +EG++ A+ F M++ P+ + Y +I
Sbjct: 379 FEYFSEM--KNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLI 436
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A C+ GN +A LL M G + ++ TYT L+ CK G
Sbjct: 437 DANCKAGNLTEAWKLLNDMLQAGVKL--NIVTYTALLDGLCKAG 478
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F G + L +F +EM G + T V LI L + G+V A+ F RM +
Sbjct: 580 FKAGKSSDAL-NFFQEMQDVGVEATIVTYCV--LIDGLCKAGIVELAVDYFCRMLSLGLQ 636
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V Y +I+ LC+ A+ L ++M+ G PD+ +T LI K+G
Sbjct: 637 PNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGM--TPDITAFTALIDGNLKHG 688
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 78/209 (37%), Gaps = 62/209 (29%)
Query: 106 QKVTLGINK----ATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEM-- 158
K+ LG+ + A +F+ W F H E C + +VF R D +KE+
Sbjct: 133 SKILLGLREDPKLALKFFKWAGSQVGFRHTTESYCIIVHLVF-RARMYTDAHDTVKEVIM 191
Query: 159 -SRRGNG-------ELVTTSTVTC---------LIKVLGEEGLVNEALATFYRMKQFR-- 199
SR G +++ ++ C L V E GL+ EA F RM+ FR
Sbjct: 192 NSRMDMGFPVCNIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTL 251
Query: 200 ---------------------------------CRPDVYAYNVVINALCRVGNFNKARFL 226
P V+ YNV+I+ LC+ G+ +R L
Sbjct: 252 PKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRL 311
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
QM G PDV TY LI Y K G
Sbjct: 312 FVQMREMGL--SPDVVTYNSLIDGYGKVG 338
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 172 VTCLIKVLGEEGLVN---------EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
V C+ ++ GL+N A F MK +P+V Y+ +I+A C+ G
Sbjct: 353 VGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQG 412
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A L M G P+ +TYT LI + CK G
Sbjct: 413 AIKLFVDMRRTGLL--PNEFTYTSLIDANCKAG 443
>gi|11079485|gb|AAG29197.1|AC078898_7 hypothetical protein [Arabidopsis thaliana]
Length = 441
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
R V + KEM++ NG + T LI L E ++EAL+ +MK C P
Sbjct: 201 CRRKEVDAAFKVFKEMTQ--NGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCP 258
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+V Y V+I+ALC G ++A L +QM G + PD YT+LI S+C
Sbjct: 259 NVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIK--PDDCMYTVLIQSFC 306
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 115 ATEFYHWVERFFHFFHNEVT--------CKE--------MGIVFARG-NNVKG---LWDF 154
A F W+ R +F HN + C + + I+ + N+V+ + DF
Sbjct: 43 ALSFSDWISRIPNFKHNVTSYASLVTLLCSQEIPYEVPKITILMIKSCNSVRDALFVVDF 102
Query: 155 LKEMSRRGNGELVTTSTVTC---LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ M + + E+ T C L+ L GLV E + M + PD+Y +N ++
Sbjct: 103 CRTMRKGDSFEIKYKLTPKCYNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLV 162
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N C++G +A+ + + G C PD +TYT I+ +C+
Sbjct: 163 NGYCKLGYVVEAKQYVTWLIQAG--CDPDYFTYTSFITGHCR 202
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L G +EA+ F +M + +PD Y V+I + C ++A LLE M
Sbjct: 262 TYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHM 321
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G P+V TY LI +CK
Sbjct: 322 LENGLM--PNVITYNALIKGFCK 342
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+ A F M Q C + +Y +I L ++A LL +M+ C P+V TY
Sbjct: 206 VDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMK--DDNCCPNVRTY 263
Query: 245 TILISSYCKYGMQT 258
T+LI + C G ++
Sbjct: 264 TVLIDALCGSGQKS 277
>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
Length = 447
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+F KEM + +G + L+ L + G + EA A F M C PD+ YNV+++
Sbjct: 113 EFFKEM--KASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMD 167
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C++G +A+ L++++ G+ P+V+TY+I+I+ YCK
Sbjct: 168 GYCKIGQTYEAQSLMKEILKAGYE--PNVFTYSIIINCYCK 206
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
+ A+ F MK PD+ +Y+++++AL G +A L M C PD+ T
Sbjct: 107 MAGRAIEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAM-----TCSPDIMT 161
Query: 244 YTILISSYCKYG 255
Y +L+ YCK G
Sbjct: 162 YNVLMDGYCKIG 173
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V EA F +M + C P+ +N +I C+ G A L +ME G C + TY
Sbjct: 210 VEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIG--CKATIVTY 267
Query: 245 TILISSYCK 253
LI S CK
Sbjct: 268 NTLIDSLCK 276
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
G G T T LI+ E N+ L M C+PDV YN +I+ LC
Sbjct: 292 EGAGLTPTIVTYNSLIQGFSER--ANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRV 349
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
A+ L G C P+V T+ LI C
Sbjct: 350 EDAQRLFN-----GMACAPNVTTFNFLIRGLC 376
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T CLI L V +A F M C P+V +N +I LC +AR +L++M
Sbjct: 335 TYNCLISGLCSANRVEDAQRLFNGMA---CAPNVTTFNFLIRGLCAQKKVEEARNILDRM 391
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
PD+ T+ +I ++CK G
Sbjct: 392 T------APDMTTFNTIILAFCKAG 410
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 142 FARGNNVKGLWD-FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + + V+ W+ F+K + VT +T LI + G++ +A+ F M++ C
Sbjct: 204 YCKLDKVEEAWEVFMKMIESNCVPNAVTFNT---LIAGFCKAGMLEDAIKLFAEMEKIGC 260
Query: 201 RPDVYAYNVVINALCRV-GNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+ + YN +I++LC+ G A L ++E G P + TY LI +
Sbjct: 261 KATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGL--TPTIVTYNSLIQGF 310
>gi|449468059|ref|XP_004151739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 225
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
+ + CLI L + G + A F ++ Q + DV YN++I+ C+VG +KA L
Sbjct: 84 LDIESYNCLIDGLCKAGKLETAWELFEKLYQEGLQSDVVTYNIMIHGFCKVGQVDKANIL 143
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCK 253
E+ME G C PD+ TY L+ +C+
Sbjct: 144 FEKMEENG--CTPDIITYNTLLCGFCQ 168
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 170 STVTCLIKV----LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
S +C+ ++ L + G + EA+ F ++K + + D+ +YN +I+ LC+ G A
Sbjct: 48 SADSCIYRIFLDGLCKNGCLYEAMEHFNQLKSYNIKLDIESYNCLIDGLCKAGKLETAWE 107
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L E++ G + DV TY I+I +CK G
Sbjct: 108 LFEKLYQEGLQ--SDVVTYNIMIHGFCKVG 135
>gi|224144668|ref|XP_002325369.1| predicted protein [Populus trichocarpa]
gi|222862244|gb|EEE99750.1| predicted protein [Populus trichocarpa]
Length = 422
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRR-GNGELVTTST 171
+++ F++W ++ + +E+ I R +W + ++ G+ V++ T
Sbjct: 55 SESLRFFNWARSYYS--PTTIEYEELIITLVRNKKYASMWKLIAQVKDNLGDKFSVSSDT 112
Query: 172 VTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
V +I+ G+ GL+++A+ F + + C+ +V YN ++ ALC V F+ A L+ +M
Sbjct: 113 VCSIIEEYGKHGLIDQAVEVFNKCSRSLNCQHNVCVYNSLLFALCEVKMFHGAYALVRRM 172
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PD TY +L++ +C G
Sbjct: 173 IRKGI--VPDKRTYGVLVNGWCSSG 195
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL+EMS++G V + LI+ L G + A RM + PDV +N ++ A
Sbjct: 203 FLEEMSKKGFNPPVRGRDL--LIEGLLNAGYLESAKDMVRRMMKEGLVPDVNTFNSMVEA 260
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+C G + + + GF C PD+ +Y ILI + K G
Sbjct: 261 ICNAGEVDFCVDMYHSVCKLGF-C-PDINSYKILIPAVSKVG 300
>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
GN + + F K RG +VT +T+ I L ++ LVNEA+ M PDV
Sbjct: 215 GNTIMAVRVFRKMEQNRGKPNVVTYNTI---IDSLCKDRLVNEAVEFLSEMVDRGIPPDV 271
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
YN +++ C +G N+A L ++M G PD T+ IL+ CK GM
Sbjct: 272 VTYNTILHGFCSLGQLNEATRLFKEM--VGRNVMPDTVTFNILVDGLCKEGM 321
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+FL EM RG ++VT +T+ LG+ +NEA F M PD +N+++
Sbjct: 257 EFLSEMVDRGIPPDVVTYNTILHGFCSLGQ---LNEATRLFKEMVGRNVMPDTVTFNILV 313
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ LC+ G ++AR + E M G P+ YTY L+ YC
Sbjct: 314 DGLCKEGMVSEARCVSETMTEKG--AEPNAYTYNALMDGYC 352
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L EG + EA+ F M P+V +YN VIN LC+ GN A + +M
Sbjct: 168 TFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKM 227
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E R P+V TY +I S CK
Sbjct: 228 EQN--RGKPNVVTYNTIIDSLCK 248
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
KEM G + T T L+ L +EG+V+EA M + P+ Y YN +++
Sbjct: 293 LFKEMV--GRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDG 350
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C ++A +L M G C P++ +Y ILI+ YCK
Sbjct: 351 YCLHNQMDEAIKVLGIM--IGKGCAPNLSSYNILINGYCK 388
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 154 FLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
L EMS + +T TVT L++ L + G EAL F M PD+ AY++++
Sbjct: 398 LLSEMSEKN----LTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILL 453
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+ C+ G+ ++A LL++M R P++ YTILI
Sbjct: 454 DGFCKHGHLDEALKLLKEMHER--RIKPNIILYTILI 488
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G S+ LI + +NEA M + PD Y+ ++ LC+VG
Sbjct: 369 GKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPR 428
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A L ++M G PD+ Y+IL+ +CK+G
Sbjct: 429 EALNLFKEMCSSGLL--PDLMAYSILLDGFCKHG 460
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ KEM +G L + L+ + G ++EAL M + R +P++ Y ++I
Sbjct: 432 NLFKEMC--SSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIR 489
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
+ G A+ L ++ G R PD++TY ++I K G+
Sbjct: 490 GMFIAGKLEVAKELFSKLSADGIR--PDIWTYNVMIKGLLKEGLS 532
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+ M C P++ +YN++IN C+ N+A+ LL +M PD TY
Sbjct: 357 MDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNL--TPDTVTY 414
Query: 245 TILISSYCKYG 255
+ L+ C+ G
Sbjct: 415 STLMQGLCQVG 425
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
++ LI L V+ A++ +M + +PD +N +IN LC G +A L +M
Sbjct: 133 SLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEM 192
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P+V +Y +I+ CK G
Sbjct: 193 VWSGHE--PNVISYNTVINGLCKNG 215
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + ++ LKEM R + T+ LI+ + G + A F ++ R
Sbjct: 456 FCKHGHLDEALKLLKEMHERRIKPNIILYTI--LIRGMFIAGKLEVAKELFSKLSADGIR 513
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
PD++ YNV+I L + G ++A +ME GF PD +Y ++I +
Sbjct: 514 PDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFL--PDSCSYNVIIQGF 561
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++AL +FYRM + RP V + + ++ + ++ A L QM+L F +VY+
Sbjct: 77 IDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDL--FGVTHNVYSL 134
Query: 245 TILISSYCK 253
+LI+ C+
Sbjct: 135 NVLINCLCR 143
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTS--TVTCLIKVLGEEGLVNEALATFYRMKQF 198
+ RG + G + KE+ + + + + T +IK L +EGL +EA F +M+
Sbjct: 486 ILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDD 545
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
PD +YNV+I + + + A L+++M G R D T+ +L+
Sbjct: 546 GFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEM--VGKRFSADSSTFQMLLD 594
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+ A++ +M F +VY+ NV+IN LCR+ + + A ++ +M G + PD T+
Sbjct: 113 SSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQ--PDAITFN 170
Query: 246 ILISSYCKYG 255
LI+ C G
Sbjct: 171 TLINGLCNEG 180
>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 8/103 (7%)
Query: 160 RRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
RRG + +VT +T LIK L E ++EA F RM++ C PDV Y +I LC G
Sbjct: 132 RRGYSPNIVTYNT---LIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTG 188
Query: 219 NFNKARFLLEQM--ELPGFR--CPPDVYTYTILISSYCKYGMQ 257
N N A L ++M ++ + C P+V TY I++ CK G +
Sbjct: 189 NINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGRE 231
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 150 GLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
G W+ L EM +G + T V LI L +EG V EA M + PD+
Sbjct: 264 GKWEESKRLLDEMLDQGLQPDMVTFNV--LIDTLCKEGKVIEAKKLLGVMIESGIVPDLV 321
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN +I C VG+ N AR L M P C PDV +Y +LI+ Y K
Sbjct: 322 TYNSLIEGFCMVGDLNSARELFVSM--PSKGCEPDVISYNVLINGYSK 367
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 175 LIKVLGEEGLVNEALATFYRM------KQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
LIK L G +N AL M + C+P+V YN++++ LC+VG ++A+ L E
Sbjct: 180 LIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFE 239
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M+ G P + +Y LI +C G
Sbjct: 240 EMKTQGM--IPSIISYNSLIHGFCCAG 264
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ CLI L + G + A F ++ P+V Y ++I+ CR G +KA L+++ME
Sbjct: 463 LNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKME 522
Query: 232 LPGFRCPPDVYTYTILISSY 251
G C PD+ TY L+ +
Sbjct: 523 ANG--CTPDIITYNTLMRGF 540
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
EA+ F +K + ++ N +I+ LC+ G A L E++ G P+V TYTI
Sbjct: 443 EAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHE--PNVVTYTI 500
Query: 247 LISSYCKYG 255
+I +C+ G
Sbjct: 501 MIHGFCREG 509
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD+ +NV+I+ LC+ G +A+ LL M G PD+ TY LI +C G
Sbjct: 282 QPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGI--VPDLVTYNSLIEGFCMVG 334
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +N A F M C PDV +YNV+IN + +A L +M L G R P+V
Sbjct: 334 GDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKR--PNVI 391
Query: 243 TYTILI 248
TY L+
Sbjct: 392 TYDSLL 397
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+ L+ L + E A F + + P++ YN +I LC ++A L +M
Sbjct: 106 TLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRM 165
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G C PDV TY LI C G
Sbjct: 166 QKLG--CTPDVVTYGTLIKGLCGTG 188
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++ W+ +++S G+ V T T+ +I EG V++A +M+ C
Sbjct: 470 LCKAGKLETAWELFEKLSNEGHEPNVVTYTI--MIHGFCREGQVDKANVLIQKMEANGCT 527
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD+ YN ++ + LL +M PD T +I++ K
Sbjct: 528 PDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDV--SPDAITCSIVVDMLSK 577
>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Brachypodium distachyon]
Length = 684
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T+ LI G V+ A F +M C+PD + YN +++ +C+ G ++A L+
Sbjct: 175 STAVYNALIVASVRAGAVDTAYLRFQQMPADGCQPDCFTYNTLVHGVCQRGIIDEALRLV 234
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
QME G R P+V+TYT+L+ +C G
Sbjct: 235 RQMEGAGIR--PNVFTYTMLVDGFCNAG 260
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 37/182 (20%)
Query: 107 KVTLGINKATEFYHWVERF-FHFFHNEVTCKEMGI-VFARGNNVKGLWDFLKEMSRRGN- 163
K LG +++ H+++R + VT M I F + V + +KEM +G
Sbjct: 394 KSLLGCKSSSKANHYLKRMVLDGLLSGVTSYNMVIDCFVKAGAVDKAAEIIKEMREKGVL 453
Query: 164 GELVTTSTVT-------------CLIKVLGEEGLV-------------------NEALAT 191
LVT +T+ ++K+L E GL+ ++A
Sbjct: 454 PNLVTFNTLISGYSKLGNVHNAKAVLKMLMEHGLIPDIITFTSLINGLCHTHQLDDAFDC 513
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F M ++ RP+ + YNV+++ALC G+ NKA LL +M+ G PD Y++ I S+
Sbjct: 514 FNEMAEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKDGI--TPDAYSFNAPILSF 571
Query: 252 CK 253
C+
Sbjct: 572 CR 573
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 7/141 (4%)
Query: 118 FYHWVERFFHFFHNEVTCKEM--GIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCL 175
Y W RF F + + + ++ RG V + E+ RG G V+ + L
Sbjct: 91 LYVWASRFGAHFARDASVRRALEDALWRRGPAVLSA-ALVAEV--RGCGCEVSEELLRAL 147
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
I G GL A F +M + RP YN +I A R G + A +QM P
Sbjct: 148 IASWGRLGLAQYAHEVFVQMPRLGLRPSTAVYNALIVASVRAGAVDTAYLRFQQM--PAD 205
Query: 236 RCPPDVYTYTILISSYCKYGM 256
C PD +TY L+ C+ G+
Sbjct: 206 GCQPDCFTYNTLVHGVCQRGI 226
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L G VN+A+ +MK+ PD Y++N I + CR+ +KAR + M
Sbjct: 528 TYNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKKVDKARNIFNAM 587
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
G PD YTY LI + C
Sbjct: 588 LRLGV--VPDNYTYNSLIKALC 607
>gi|357142290|ref|XP_003572522.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 669
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R ++VT S+ LI E+GLV A+ F M C+PD+++YN V+ LCR +
Sbjct: 479 RCTPDIVTYSS---LINGFSEQGLVESAIELFQSMP---CKPDIFSYNAVLKGLCRAARW 532
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A L+ M CPP+ T+ ILI+S C+ G
Sbjct: 533 EDAGELIANMARKD--CPPNEITFNILINSLCQKG 565
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + GLVN A+ F +M ++RC PD+ Y+ +IN G A L + M
Sbjct: 451 TFNILIDSLCQHGLVNHAIEVFEQMPKYRCTPDIVTYSSLINGFSEQGLVESAIELFQSM 510
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C PD+++Y ++ C+
Sbjct: 511 P-----CKPDIFSYNAVLKGLCR 528
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
K + + + EM R+ +T + L L + GLV+ A+ +M+++ CRPDV YN
Sbjct: 329 KDVGELIAEMVRKDCPP--NEATFSMLTSCLCQHGLVDCAMEVVEQMQKYGCRPDVVIYN 386
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+IN G + A LL+ M C PD ++ + + C+
Sbjct: 387 TLINYFSEQGRVDDALMLLDSM-----LCNPDTISFNAALKALCR 426
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L ++G + A+ F +M ++ PD++ YN +IN G + A LL M
Sbjct: 553 TFNILINSLCQKGFADRAIEVFKQMPEYGSTPDIFTYNALINGFSEQGRLDDALNLLSTM 612
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C PD +Y + C+
Sbjct: 613 S-----CKPDAISYNSTLKGLCR 630
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI E+G V++AL M C PD ++N + ALCR + L+ QM
Sbjct: 388 LINYFSEQGRVDDALMLLDSM---LCNPDTISFNAALKALCRTERWYDVEELIAQMLRED 444
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
CP T+ ILI S C++G+
Sbjct: 445 --CPLIEMTFNILIDSLCQHGL 464
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
NEVT F + + L+ M R G ++V ST L+ E+G V++AL
Sbjct: 244 NEVTFATQIRSFCQNGLLDHAVQLLERMPRYGCTPDVVIYST---LVNGFSEQGRVDDAL 300
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
M C+P+ YN + LC + L+ +M CPP+ T+++L S
Sbjct: 301 VLLNTM---LCKPNTVCYNAALKGLCMAERWKDVGELIAEMVRKD--CPPNEATFSMLTS 355
Query: 250 SYCKYGM 256
C++G+
Sbjct: 356 CLCQHGL 362
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI G + +AL M PD Y YN V+ LC + KA L+E+M
Sbjct: 180 TYTALINGYCRSGRLADALNLIASMP---VAPDTYTYNTVLKGLCGAKQWEKAEELMEEM 236
Query: 231 ELPGFR--CPPDVYTYTILISSYCKYGM 256
R C P+ T+ I S+C+ G+
Sbjct: 237 ----IRNNCHPNEVTFATQIRSFCQNGL 260
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI E+G +++AL M C+PD +YN + LCR + +A ++ +M
Sbjct: 588 TYNALINGFSEQGRLDDALNLLSTMS---CKPDAISYNSTLKGLCRAERWKEAEEIVAEM 644
Query: 231 ELPGFRCPPDVYTY 244
+CPP+ T+
Sbjct: 645 LRK--KCPPNEVTF 656
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
M + C P+ + I + C+ G + A LLE+M P + C PDV Y+ L++ + +
Sbjct: 235 EMIRNNCHPNEVTFATQIRSFCQNGLLDHAVQLLERM--PRYGCTPDVVIYSTLVNGFSE 292
Query: 254 YG 255
G
Sbjct: 293 QG 294
>gi|255549794|ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 706
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R + L+D ++M + +G L T LI G G V EA+ F ++ C
Sbjct: 293 ALGRLKQISHLYDLYEKM--KLDGPLPDIFTYNILISSFGRAGKVYEAIKIFEELENSDC 350
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+PD+ +YN +IN L + G+ ++A +M+ G PDV TY+ LI + K
Sbjct: 351 KPDIISYNSLINCLGKNGDLDEAHIRFREMQEKGLN--PDVVTYSTLIECFGK 401
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EM R+G + L+ L ++ V++A F MK+ C PD Y Y ++I R
Sbjct: 67 EMKRKGY--TLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMIRMTGR 124
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+G +++ L E+M G C P++ Y +I +
Sbjct: 125 IGKLDESLALFEEMLNKG--CSPNLIAYNTMIQA 156
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I++ G G ++E+LA F M C P++ AYN +I AL +K L +M
Sbjct: 114 TYTIMIRMTGRIGKLDESLALFEEMLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKM 173
Query: 231 ELPGFRCPPDVYTYTILIS 249
C P+ +TY+++++
Sbjct: 174 MEKN--CRPNEFTYSVILT 190
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 156 KEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
+EM +G N ++VT ST LI+ G+ V A F M C P++ YN++++ L
Sbjct: 378 REMQEKGLNPDVVTYST---LIECFGKTDKVEMACRLFDEMLAEGCFPNIVTYNILLDCL 434
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
R G +A L +++ G PD TY++L
Sbjct: 435 ERSGRTAEAVDLYAKLKQQGL--TPDSITYSVL 465
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++ L G EA+ ++ + D YN V AL R+ + L E+M+L G
Sbjct: 255 MLESLCNAGKTVEAIDLLGKIHEKGINTDTIMYNTVFTALGRLKQISHLYDLYEKMKLDG 314
Query: 235 FRCP-PDVYTYTILISSYCKYG 255
P PD++TY ILISS+ + G
Sbjct: 315 ---PLPDIFTYNILISSFGRAG 333
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 145 GNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
G V+ + D L ++ +G N + + +TV LG ++ + +MK PD
Sbjct: 263 GKTVEAI-DLLGKIHEKGINTDTIMYNTV---FTALGRLKQISHLYDLYEKMKLDGPLPD 318
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ YN++I++ R G +A + E++E C PD+ +Y LI+ K G
Sbjct: 319 IFTYNILISSFGRAGKVYEAIKIFEELE--NSDCKPDIISYNSLINCLGKNG 368
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F G +++ +++ + NG T CL++ + + MK+
Sbjct: 20 FGDGEDLERCIGLIEKWDLKMNG-----YTYKCLVQAYLRSCDSDNGFRVYLEMKRKGYT 74
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
D++A+N++++AL + ++A + E M+ C PD YTYTI+I
Sbjct: 75 LDIFAFNMLLDALAKDQKVDQAFKVFEDMKKK--HCEPDEYTYTIMI 119
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI LG+ G ++EA F M++ PDV Y+ +I + A L ++M G
Sbjct: 360 LINCLGKNGDLDEAHIRFREMQEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEG 419
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P++ TY IL+ + G
Sbjct: 420 --CFPNIVTYNILLDCLERSG 438
>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
Length = 583
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 10/144 (6%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++KA+EF VE + + K M + RG + F + + R V +
Sbjct: 203 LSKASEFGCRVEAYAYN-------KLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFN 255
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
V +IK + G V +AL RM +F C PD +N++++ LCR ++ +L +++
Sbjct: 256 V--VIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQ 313
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
G C P+V T+T +IS YCK G
Sbjct: 314 RDGV-CMPNVVTFTSVISGYCKAG 336
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIV--FARGNNVKGLWDFLKEMSRRGNGELVTT 169
+ KA E VER F + T +V R N V + L+ + R G +
Sbjct: 267 VQKALEL---VERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVC-MPNV 322
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T T +I + G + +A+A + M P+ YNV+IN +VG+ A + +Q
Sbjct: 323 VTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQ 382
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M RCPPDV T++ LI YC+ G
Sbjct: 383 MTR--LRCPPDVVTFSSLIDGYCRCG 406
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
+G + T T LI G+ G + A+ + +M + RC PDV ++ +I+ CR G +
Sbjct: 350 ASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLD 409
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A + M R P+VYT++I+I S CK
Sbjct: 410 DALRIWSDMA--QHRIQPNVYTFSIIIHSLCK 439
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV----YAYNVVINALCRVGNFNKARFL 226
T + +I L ++ +EA+ + + RPD+ + YN VI+ LC+ G ++A +
Sbjct: 429 TFSIIIHSLCKQNRSDEAIGL---LNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLI 485
Query: 227 LEQMELPGFRCPPDVYTYTILISSYC 252
+ ME G C PD YTYTILI YC
Sbjct: 486 RKGMEEKG--CRPDKYTYTILIIGYC 509
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I VL + G V+EA M++ CRPD Y Y ++I C ++A +M G
Sbjct: 469 VIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAG 528
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
C PD T IS K GM
Sbjct: 529 --CSPDSITVNCFISCLLKAGM 548
>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
Length = 547
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK + G +AL RM +F C PD +N++++ LCR NK +L +++ G
Sbjct: 221 VIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDG 280
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+ TYT +IS YCK G
Sbjct: 281 V-CMPNAVTYTSVISGYCKAG 300
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 150 GLWDFLKEMSRRGN--GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC-RPDVYA 206
GL D + +G+ G + L+ L G +A+A F Q PDV++
Sbjct: 158 GLLDAASTLLTKGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWS 217
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+NVVI +CR+GNF KA L+E+M F C PD T+ IL+ C+
Sbjct: 218 FNVVIKGVCRMGNFQKALELVERMT--EFGCSPDTITHNILVDGLCR 262
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 13/192 (6%)
Query: 64 RSIGRQTGFRHRTPLKQRILK--KEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHW 121
+ + R F+ L +R+ + D I +N+LV G + +NK E
Sbjct: 223 KGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQ-------VNKGHEVLRR 275
Query: 122 VERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE 181
++R N VT + + + ++ +M G T T LI G+
Sbjct: 276 LQRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRP--NTVTYNVLINGYGK 333
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
+ A+ + ++ C PDV ++ +I+ CR G + A+ + ++M L + P+V
Sbjct: 334 ALDMESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQ--PNV 391
Query: 242 YTYTILISSYCK 253
YT++I+I S CK
Sbjct: 392 YTFSIIIHSLCK 403
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 11/163 (6%)
Query: 93 NVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLW 152
NV++ G N QK + + TEF + H + C R V
Sbjct: 219 NVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLC--------RAKQVNKGH 270
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L+ + R G + T T +I + G + +A++ + M + RP+ YNV+IN
Sbjct: 271 EVLRRLQRDGVC-MPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLIN 329
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ + A + Q+ L CPPDV T++ LI YC+ G
Sbjct: 330 GYGKALDMESAVRMYRQLIL--RHCPPDVVTFSSLIDGYCRCG 370
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 55/137 (40%), Gaps = 4/137 (2%)
Query: 121 WVERFFHFFHNEVTCKEMGI-VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVL 179
W E H V + I + N D L+E++ R + T +I +L
Sbjct: 379 WKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILRELNMRTDIA-PQTFIYNPVIDIL 437
Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
+ G V+EA MK+ C PD Y Y ++I C G +A L +M G C P
Sbjct: 438 CKGGKVDEANLIVTDMKEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVEAG--CRP 495
Query: 240 DVYTYTILISSYCKYGM 256
D T +S K GM
Sbjct: 496 DNITVNSFVSCVLKAGM 512
>gi|334183970|ref|NP_177858.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332197845|gb|AEE35966.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 402
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
R V + KEM++ NG + T LI L E ++EAL+ +MK C P
Sbjct: 201 CRRKEVDAAFKVFKEMTQ--NGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCP 258
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+V Y V+I+ALC G ++A L +QM G + PD YT+LI S+C
Sbjct: 259 NVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIK--PDDCMYTVLIQSFC 306
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 115 ATEFYHWVERFFHFFHNEVT--------CKE--------MGIVFARG-NNVKG---LWDF 154
A F W+ R +F HN + C + + I+ + N+V+ + DF
Sbjct: 43 ALSFSDWISRIPNFKHNVTSYASLVTLLCSQEIPYEVPKITILMIKSCNSVRDALFVVDF 102
Query: 155 LKEMSRRGNGELVTTSTVTC---LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ M + + E+ T C L+ L GLV E + M + PD+Y +N ++
Sbjct: 103 CRTMRKGDSFEIKYKLTPKCYNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLV 162
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N C++G +A+ + + G C PD +TYT I+ +C+
Sbjct: 163 NGYCKLGYVVEAKQYVTWLIQAG--CDPDYFTYTSFITGHCR 202
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L G +EA+ F +M + +PD Y V+I + C ++A LLE M
Sbjct: 262 TYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHM 321
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G P+V TY LI +CK
Sbjct: 322 LENGLM--PNVITYNALIKGFCK 342
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+ A F M Q C + +Y +I L ++A LL +M+ C P+V TY
Sbjct: 206 VDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMK--DDNCCPNVRTY 263
Query: 245 TILISSYCKYGMQT 258
T+LI + C G ++
Sbjct: 264 TVLIDALCGSGQKS 277
>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
Length = 746
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ GN ++ D ++++ +G V T + LI L + G AL F MK
Sbjct: 368 VALCSGNRLEEALDLARQVTLKGLSPDVYTFNI--LINALCKVGDPQLALRLFEEMKSSG 425
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C PD YN +I+ LC +G KA LL++ME G CP TY +I CK
Sbjct: 426 CTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAG--CPRSTVTYNTIIDGLCK 477
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L +M RG L +T LI L + EAL ++ PDVY +N++INA
Sbjct: 347 ILNQMVERGC--LPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINA 404
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+VG+ A L E+M+ G C PD TY LI + C G
Sbjct: 405 LCKVGDPQLALRLFEEMKSSG--CTPDEVTYNTLIDNLCSLG 444
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
V CL K G + EA +M + C PD+ +N +I ALC +A L Q+
Sbjct: 332 VNCLCK----NGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVT 387
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
L G PDVYT+ ILI++ CK G
Sbjct: 388 LKGL--SPDVYTFNILINALCKVG 409
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L + G V AL M Q PDV+ YN+V+N LC+ G +A+ +L QM
Sbjct: 292 TYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 351
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
G C PD+ T+ LI + C
Sbjct: 352 VERG--CLPDITTFNTLIVALC 371
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R + V+ L+EMS G +T T L++ EEG + AL RM + C
Sbjct: 195 LCRAHQVRTAVLMLEEMSSSGVAP--DETTFTTLMQGFVEEGSIKAALRVKARMLEMGCS 252
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P NV+IN C++G A ++Q GF PD TY ++ C+ G
Sbjct: 253 PTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFE--PDQITYNTFVNGLCQNG 304
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N +T + + + ++K D L+ M+ NG V T LI L + G AL
Sbjct: 534 NNITYNSILTHYCKQGDIKKAADILQTMT--ANGFEVDVVTYGTLINGLCKAGRTQVALK 591
Query: 191 TF--YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
R+K R P AYN VI +L R N A L +M G PPD +TY I+
Sbjct: 592 LLRGMRIKGMRATPK--AYNPVIQSLFRRNNTRDAMNLFREMTEVGE--PPDAFTYKIVF 647
Query: 249 SSYCKYG 255
C+ G
Sbjct: 648 RGLCRGG 654
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 182 EGLVNEALATFY-RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
EG + L T Y M + +PDV +N ++ ALCR A +LE+M G PD
Sbjct: 162 EGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGV--APD 219
Query: 241 VYTYTILISSYCKYG 255
T+T L+ + + G
Sbjct: 220 ETTFTTLMQGFVEEG 234
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L ++ +++A +M +P+ YN ++ C+ G+ KA +L+ M
Sbjct: 502 TFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTM 561
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF DV TY LI+ CK G
Sbjct: 562 TANGFEV--DVVTYGTLINGLCKAG 584
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L G + +AL M+ C YN +I+ LC+ +A + +QM
Sbjct: 432 TYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQM 491
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+L G + T+ LI CK
Sbjct: 492 DLQGI--SRNAITFNTLIDGLCK 512
>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
Length = 658
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L +EG EA+ + +M + CRP++ Y+ VI+ LCR G N+A+ +L M G
Sbjct: 368 LISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSG 427
Query: 235 FRCPPDVYTYTILISSYCKYGMQ 257
C P+VYTY+ L+ + K G+
Sbjct: 428 --CLPNVYTYSSLMKGFFKTGLS 448
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK L + G V+ A+ F M + +C PD Y Y +++ LC+ ++A LL++M+ G
Sbjct: 193 VIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEG 252
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P Y +LI CK G
Sbjct: 253 --CSPSPVIYNVLIDGLCKKG 271
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L +E ++EA+ M+ C P YNV+I+ LC+ G+ ++ L++ M
Sbjct: 224 TYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNM 283
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L G C P+ TY LI C G
Sbjct: 284 FLKG--CFPNEVTYNTLIHGLCLKG 306
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM---E 231
LI L G V EA+ + +M +PD AY+ +I LC +G+ + A L +M E
Sbjct: 473 LIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQE 532
Query: 232 LPGFRCPPDVYTYTILISSYC 252
P + PDV TY IL+ C
Sbjct: 533 EP--KSQPDVVTYNILLDGLC 551
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G L T + L+K + GL EA+ + M + C + + Y+V+I+ LC VG +
Sbjct: 426 SGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKE 485
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A + +M G + PD Y+ +I C G
Sbjct: 486 AMMVWSKMLTIGIK--PDTVAYSSMIKGLCGIG 516
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+ ++N+VI ALC++G ++A + M P +C PD YTY L+ CK
Sbjct: 185 PNGLSFNLVIKALCKLGFVDRAIEVFRGM--PEKKCLPDGYTYCTLMDGLCK 234
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
LW + E R N +V S V I L EG NEA M C P+VY Y+ +
Sbjct: 384 LWKKMAEKGCRPN--IVVYSAV---IDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSL 438
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ + G +A + +M+ G C + + Y++LI C G
Sbjct: 439 MKGFFKTGLSEEAIQVWREMDETG--CSRNEFCYSVLIDGLCGVG 481
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C P+ YN +I+ LC G +KA LLE+M +C P+ TY LI+ K
Sbjct: 288 CFPNEVTYNTLIHGLCLKGKLDKAVSLLERM--VSSKCIPNDVTYGTLINGLVK 339
>gi|302143622|emb|CBI22375.3| unnamed protein product [Vitis vinifera]
Length = 407
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI+ EG +NEA+ M PD+Y YN +I +C+ G +++ L+
Sbjct: 206 TVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMWDEGEKLV 265
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M G C P+ TY+ILISS C++G
Sbjct: 266 AEMFSRG--CEPNKVTYSILISSLCRFG 291
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 144 RGNNVKGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
RG +G+WD + EM RG T ++ LI L G ++EA++ M +
Sbjct: 250 RGMCKEGMWDEGEKLVAEMFSRGCEPNKVTYSI--LISSLCRFGRIDEAISVLKVMIEKE 307
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y+Y+ +I+ALC+ G + A +++ M G C PD+ Y ++++ CK G
Sbjct: 308 LTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNG--CLPDIVNYNTILAALCKNG 361
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+EM RG L T +I+ + +EG+ +E M C P+ Y+++I++
Sbjct: 229 LLEEMLARG--LLPDMYTYNAIIRGMCKEGMWDEGEKLVAEMFSRGCEPNKVTYSILISS 286
Query: 214 LCRVGNFNKARFLLEQM---ELPGFRCPPDVYTYTILISSYCKYG 255
LCR G ++A +L+ M EL PD Y+Y LIS+ CK G
Sbjct: 287 LCRFGRIDEAISVLKVMIEKEL-----TPDTYSYDPLISALCKEG 326
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + N ++ L M RG L T +I L + AL ++ C
Sbjct: 147 FCKVNRIEAATQVLNRMKARG--FLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCM 204
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P V Y ++I A G N+A LLE+M G PD+YTY +I CK GM
Sbjct: 205 PTVITYTILIEATIVEGGINEAMKLLEEMLARGLL--PDMYTYNAIIRGMCKEGM 257
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
PDV+AYN VI+ C+V A +L +M+ GF PD+ TY I+I S C
Sbjct: 134 EPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFL--PDIVTYNIMIGSLC 183
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L +EG ++ A+ M C PD+ YN ++ ALC+ GN N+A + ++ G
Sbjct: 318 LISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLR--G 375
Query: 235 FRCPPD 240
CPP+
Sbjct: 376 MGCPPN 381
>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
Length = 481
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE GN K L F +EMSR+G T T T LI +G V E F
Sbjct: 300 CKE-------GNEKKALEVF-EEMSRKG--VRATAVTYTSLIYAFSRKGQVQETDRLFKV 349
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+ RPDV YN +IN+ C G+ +A ++ +ME R PPD TY LI +C
Sbjct: 350 AVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKK--RIPPDDVTYNTLIRGFCLL 407
Query: 255 G 255
G
Sbjct: 408 G 408
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+ ++M +RG +T +T L+ L +G ++A A M++ PDV+ YN++IN
Sbjct: 241 YREDMVQRGVA--MTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILING 298
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ GN KA + E+M G R TYT LI ++ + G
Sbjct: 299 YCKEGNEKKALEVFEEMSRKGVRA--TAVTYTSLIYAFSRKG 338
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 163 NGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
GE+ ++ + LI + G ++ AL M Q V YN++++AL G +
Sbjct: 212 QGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRAS 271
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A +LE+M+ G PDV+TY ILI+ YCK G
Sbjct: 272 DAYAVLEEMQRNGLS--PDVFTYNILINGYCKEG 303
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T+T +++ L G AL +M RP+ YN VI C G A ++
Sbjct: 116 TTTFNIMLRHLCATGKPVRALELLRQMP----RPNAVTYNTVIAGFCARGRVQAALEVMR 171
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M G PD YTY LIS +CK G
Sbjct: 172 EMRERG-GIAPDKYTYATLISGWCKIG 197
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-FRCR 201
A G V+ L + L++M R VT +TV I G V AL M++
Sbjct: 128 ATGKPVRAL-ELLRQMPRPNA---VTYNTV---IAGFCARGRVQAALEVMREMRERGGIA 180
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y Y +I+ C++G A + ++M G P Y LI YC G
Sbjct: 181 PDKYTYATLISGWCKIGRMEDAAKVFDEMLTQG-EVAPSAVMYNALIGGYCDRG 233
>gi|125557435|gb|EAZ02971.1| hypothetical protein OsI_25111 [Oryza sativa Indica Group]
Length = 728
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 81/205 (39%), Gaps = 19/205 (9%)
Query: 67 GRQTGFRHRTP--------LKQRILKKEADNIANNVLVLG-PAAYRNPQ---KVTLGINK 114
GRQ GFRH P L L AD + + + G P ++ ++ G +
Sbjct: 151 GRQKGFRHCFPAFHALASLLSAAGLPAAADQLPDLMRAHGKPVSHSQLNLLVRLHTGARR 210
Query: 115 ATEFYHWVERFFHFF--HNEV-TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
H + RF H F EV C + A +V EMS + T
Sbjct: 211 PLRALHALRRFRHEFSVQPEVHACNRVLGALAAAGHVDDTLKLFDEMSHCSVRPMPVTFA 270
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ +++ L G+ ++ L RM+ CRPDV+ Y ++ + R G+ + E+M
Sbjct: 271 I--MVRALARAGMTDKLLEMIGRMRAEVCRPDVFVYTALVKTMVRWGHMEGCIRVWEEMR 328
Query: 232 LPGFRCPPDVYTYTILISSYCKYGM 256
PD YT +I+ C GM
Sbjct: 329 RD--HVDPDTMAYTTMIAGLCNAGM 351
>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
Length = 644
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 14/200 (7%)
Query: 67 GRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTL-----GINKATEFYHW 121
G R + I K+ +AN +L P+ P V G+ A +
Sbjct: 281 GCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEA 340
Query: 122 VERFFHFFH-----NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLI 176
E F ++VT + F + V + + L++M G V T T +I
Sbjct: 341 EELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTT--VI 398
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
+EGL++EA+ M C+P+ +Y +V+ LC G + A L+ QM G
Sbjct: 399 NGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG-- 456
Query: 237 CPPDVYTYTILISSYCKYGM 256
CPP+ T+ LI+ CK G+
Sbjct: 457 CPPNPVTFNTLINFLCKKGL 476
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
+ G + T ++ + E+G V+EA+ ++ F C D+ +YN V+ LC
Sbjct: 171 AMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAK 230
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ L+++M C P++ T+ LI C+ G+
Sbjct: 231 RWGDVEELMDEMVR--VDCAPNIVTFNTLIGYLCRNGL 266
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 174 CLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
C+ K G+ E L++E M + C P++ +N +I LCR G F + +L QM
Sbjct: 227 CMAKRWGDVEELMDE-------MVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE 279
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C PD+ Y +I CK G
Sbjct: 280 HG--CTPDIRMYATIIDGICKEG 300
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 149 KGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
+GL D LK MS G T + T ++K L G +A +M Q C P+
Sbjct: 404 EGLIDEAVMLLKSMSSCGCKP--NTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNP 461
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+N +IN LC+ G +A LL+QM + G C PD+ +Y+ +I K G
Sbjct: 462 VTFNTLINFLCKKGLVEQAIELLKQMLVNG--CSPDLISYSTVIDGLGKAG 510
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 14/201 (6%)
Query: 55 IPRFFFQSPRSIGRQTGFRHRTPLKQRILKKEAD-NIANNVLVLGPAAYRNPQKVTLGIN 113
IP + + R GFR+ + + + K + N LVL + +G+
Sbjct: 145 IPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLL 204
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFA-RGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
+ F+ + N V G+ A R +V+ L D + + N +VT +T
Sbjct: 205 RKLAFFGCEADIVSY--NAVL---KGLCMAKRWGDVEELMDEMVRVDCAPN--IVTFNT- 256
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
LI L GL +M + C PD+ Y +I+ +C+ G+ A +L +M
Sbjct: 257 --LIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM-- 312
Query: 233 PGFRCPPDVYTYTILISSYCK 253
P + P+V Y ++ C
Sbjct: 313 PSYGLKPNVVCYNTVLKGLCS 333
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
S++ C L EG VN+ + F +K R D YN VI++LC+ ++A
Sbjct: 535 SSIAC---ALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAY 591
Query: 230 MELPGFRCPPDVYTYTILISSYCKYGM 256
M G C P+ TYT+LI G+
Sbjct: 592 MVSNG--CMPNESTYTMLIKGLASEGL 616
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L ++GLV +A+ +M C PD+ +Y+ VI+ L + G +A LL M G
Sbjct: 467 LINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKG 526
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+ Y+ + + + G
Sbjct: 527 IS--PNTIIYSSIACALSREG 545
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ LK+M G + +L++ STV I LG+ G EAL M P+ Y+ +
Sbjct: 482 ELLKQMLVNGCSPDLISYSTV---IDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIA 538
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
AL R G NK + + ++ R D Y +ISS CK
Sbjct: 539 CALSREGRVNKVIQMFDNIKDTTIR--SDAVLYNAVISSLCK 578
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++ L G + +AL M C P Y+V++ A CR G F + +LE M G
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C D +++++ C+ G
Sbjct: 177 --CTLDTGNCNLVLNAICEQG 195
>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
Length = 644
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 14/200 (7%)
Query: 67 GRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTL-----GINKATEFYHW 121
G R + I K+ +AN +L P+ P V G+ A +
Sbjct: 281 GCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEA 340
Query: 122 VERFFHFFH-----NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLI 176
E F ++VT + F + V + + L++M G V T T +I
Sbjct: 341 EELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTT--VI 398
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
+EGL++EA+ M C+P+ +Y +V+ LC G + A L+ QM G
Sbjct: 399 NGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG-- 456
Query: 237 CPPDVYTYTILISSYCKYGM 256
CPP+ T+ LI+ CK G+
Sbjct: 457 CPPNPVTFNTLINFLCKKGL 476
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
+ G + T ++ + E+G V+EA+ ++ F C D+ +YN V+ LC
Sbjct: 171 AMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAK 230
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ L+++M C P++ T+ LI C+ G+
Sbjct: 231 RWGDVEELMDEMVR--VDCAPNIVTFNTLIGYLCRNGL 266
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 174 CLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
C+ K G+ E L++E M + C P++ +N +I LCR G F + +L QM
Sbjct: 227 CMAKRWGDVEELMDE-------MVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE 279
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C PD+ Y +I CK G
Sbjct: 280 HG--CTPDIRMYATIIDGICKEG 300
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 149 KGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
+GL D LK MS G T + T ++K L G +A +M Q C P+
Sbjct: 404 EGLIDEAVMLLKSMSSCGCKP--NTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNP 461
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+N +IN LC+ G +A LL+QM + G C PD+ +Y+ +I K G
Sbjct: 462 VTFNTLINFLCKKGLVEQAIELLKQMLVNG--CSPDLISYSTVIDGLGKAG 510
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 14/201 (6%)
Query: 55 IPRFFFQSPRSIGRQTGFRHRTPLKQRILKKEAD-NIANNVLVLGPAAYRNPQKVTLGIN 113
IP + + R GFR+ + + + K + N LVL + +G+
Sbjct: 145 IPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLL 204
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFA-RGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
+ F+ + N V G+ A R +V+ L D + + N +VT +T
Sbjct: 205 RKLAFFGCEADIVSY--NAVL---KGLCMAKRWGDVEELMDEMVRVDCAPN--IVTFNT- 256
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
LI L GL +M + C PD+ Y +I+ +C+ G+ A +L +M
Sbjct: 257 --LIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM-- 312
Query: 233 PGFRCPPDVYTYTILISSYCK 253
P + P+V Y ++ C
Sbjct: 313 PSYGLKPNVVCYNTVLKGLCS 333
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
S++ C L EG VN+ + F +K R D YN VI++LC+ ++A
Sbjct: 535 SSIAC---ALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAY 591
Query: 230 MELPGFRCPPDVYTYTILISSYCKYGM 256
M G C P+ TYT+LI G+
Sbjct: 592 MVSNG--CMPNESTYTMLIKGLASEGL 616
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L ++GLV +A+ +M C PD+ +Y+ VI+ L + G +A LL M G
Sbjct: 467 LINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKG 526
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+ Y+ + + + G
Sbjct: 527 IS--PNTIIYSSIACALSREG 545
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ LK+M G + +L++ STV I LG+ G EAL M P+ Y+ +
Sbjct: 482 ELLKQMLVNGCSPDLISYSTV---IDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIA 538
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
AL R G NK + + ++ R D Y +ISS CK
Sbjct: 539 CALSREGRVNKVIQMFDNIKDTTIR--SDAVLYNAVISSLCK 578
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++ L G + +AL M C P Y+V++ A CR G F + +LE M G
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C D +++++ C+ G
Sbjct: 177 --CTLDTGNCNLVLNAICEQG 195
>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 966
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ +KEM R+G + ST T +I L + V++A F MK+ PDVY Y ++I
Sbjct: 437 FQIVKEMMRKGF--VPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILI 494
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++ C+ G +A+ ++M G C P+V TYT L+ +Y K
Sbjct: 495 DSFCKAGLIEQAQSWFDEMRSAG--CSPNVVTYTALLHAYLK 534
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L + T T LI + ++G ++ A+ +M + C P+V Y +++ LC+ G KA
Sbjct: 673 GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKA 732
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL ME G C P+V TYT LI K G
Sbjct: 733 LNLLSLMEKKG--CSPNVVTYTALIDGLGKAG 762
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD Y VI LC+ +KA L ++M+ G PDVYTYTILI S+CK G+
Sbjct: 450 PDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVN--PDVYTYTILIDSFCKAGL 502
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+EM + G V T T+ LI + GL+ +A + F M+ C P+V Y +++A
Sbjct: 474 LFQEMKKVGVNPDVYTYTI--LIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHA 531
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +A + +M G C P+ TY+ LI CK G
Sbjct: 532 YLKSKQLYQANDIFHRM--VGDACYPNAITYSALIDGLCKAG 571
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 69/176 (39%), Gaps = 11/176 (6%)
Query: 80 QRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMG 139
+R L++ + + ++V+V A R+P+ F+ W ER + H +
Sbjct: 89 ERFLRRYREFLTDSVVVAVLGAVRSPEL-------CVRFFLWAERQVGYKHTGACYDALA 141
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
V + + L+E+ + V + L++ +GL EAL R+K F
Sbjct: 142 EVLGFEDPARTAERLLREIGE--DDRDVLGRLLNVLVRRCCLQGLWGEALEELGRLKDFG 199
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RP YN ++ L G A + ++M GF D T + CK G
Sbjct: 200 YRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGF--CMDRSTVGSFAQALCKEG 253
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T ++ L + G +AL M++ C P+V Y +I+ L + G + L QM
Sbjct: 715 TYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQM 774
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G C P+ TY ILI+ C G
Sbjct: 775 KTKG--CAPNYVTYRILINHCCAAG 797
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 27/204 (13%)
Query: 59 FFQSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVL--VLGPAAYRNP---QKVTLGIN 113
+F RS G T L LK + AN++ ++G A Y N + G+
Sbjct: 509 WFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLC 568
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
KA E + C+ + +N++ DF E + + ++ + VT
Sbjct: 569 KAGEI-------------QKACEVYAKLIGTSDNIES--DFYFEGK---DTDTISPNVVT 610
Query: 174 --CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
L+ L + V++A M C P+ Y+ +++ C+VG + A+ + +M
Sbjct: 611 YGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMT 670
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
G+ P V+TYT LI K G
Sbjct: 671 KCGYL--PSVHTYTSLIDRMFKDG 692
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G K L + L M ++G V T T LI LG+ G V+ L F +MK C P+
Sbjct: 727 GETEKAL-NLLSLMEKKGCSPNVVTYTA--LIDGLGKAGKVDAGLELFMQMKTKGCAPNY 783
Query: 205 YAYNVVINALCRVG 218
Y ++IN C G
Sbjct: 784 VTYRILINHCCAAG 797
>gi|255569680|ref|XP_002525805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534892|gb|EEF36579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 182
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
+G TT L+ +G ++ ALA F+ M++ + D AYN++++ +C+ G N
Sbjct: 18 ASGHSPTTVIYITLLDGFCNQGHLDMALALFHEMQKNTLKLDCVAYNIIVDGMCKAGKLN 77
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A+ L + + G + PDV TY ILI +C G
Sbjct: 78 DAKELFSTLPIEGLQ--PDVRTYNILIKVFCNEG 109
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LIKV EG + EA F M++ PD +YNV+I R + + A L+ +M
Sbjct: 97 TYNILIKVFCNEGSLEEAYQVFREMEEGGSLPDGCSYNVIIQGFLRHNDLSGATQLIHEM 156
Query: 231 ELPGFRCPPDVYTYTILISS 250
GF DV T +++ S
Sbjct: 157 IDKGFS--ADVTTPSLVADS 174
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ + + G +N+A F + +PDV YN++I C G+ +A + +ME G
Sbjct: 66 IVDGMCKAGKLNDAKELFSTLPIEGLQPDVRTYNILIKVFCNEGSLEEAYQVFREMEEGG 125
Query: 235 FRCPPDVYTYTILISSYCKY 254
PD +Y ++I + ++
Sbjct: 126 SL--PDGCSYNVIIQGFLRH 143
>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
Length = 754
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V+ +F++EMS + +G T L+ L + G V A+ M Q
Sbjct: 269 FCKEGRVEDALNFIQEMSNQ-DGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYD 327
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDVY YN VI+ LC++G +A L+QM C P+ TY LIS+ CK
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEFLDQMITRD--CSPNTVTYNTLISTLCK 377
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ F M+ C PD + YN++I++LC G ++A +L+QMEL G C V TY L
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG--CARSVITYNTL 476
Query: 248 ISSYCK 253
I +CK
Sbjct: 477 IDGFCK 482
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
F + N ++ + EM G V+ ++VT LI L + V +A +M
Sbjct: 480 FCKANKIREAEEIFDEMEVHG----VSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEG 535
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD + YN ++ CR G+ KA +++ M G C PD+ TY LIS CK G
Sbjct: 536 QKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNG--CEPDIVTYGTLISGLCKAG 589
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMK-QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+V ++ +EG V +AL M Q PD Y +N ++N LC+ G+ A +++
Sbjct: 261 SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDV 320
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M G+ PDVYTY +IS CK G
Sbjct: 321 MLQEGY--DPDVYTYNSVISGLCKLG 344
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
VK +FL +M R T T LI L +E V EA + PDV +
Sbjct: 346 VKEAVEFLDQMITRDCSP--NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTF 403
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N +I LC N A L E+M G C PD +TY +LI S C G
Sbjct: 404 NSLIQGLCLTRNHRVAMELFEEMRSKG--CEPDEFTYNMLIDSLCSKG 449
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M + +PDV +NV+I ALCR A +LE M P + PD T+T ++ Y +
Sbjct: 179 KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDM--PSYGLVPDEKTFTTIMQGYIE 236
Query: 254 YG 255
G
Sbjct: 237 EG 238
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 139 GIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
G+ R + V + +EM R G T LI L +G ++EAL +M+
Sbjct: 409 GLCLTRNHRVA--MELFEEM--RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS 464
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C V YN +I+ C+ +A + ++ME+ G + TY LI CK
Sbjct: 465 GCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGV--SRNSVTYNTLIDGLCK 517
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQ 229
T T +++ EEG ++ AL +M +F C + NV+++ C+ G A F+ E
Sbjct: 226 TFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM 285
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
GF PD YT+ L++ CK G
Sbjct: 286 SNQDGFF--PDQYTFNTLVNGLCKAG 309
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ LK+M G V T LI + + EA F M+ + YN +I+
Sbjct: 456 NMLKQMELSGCARSVITYNT--LIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLID 513
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ A L++QM + G + PD +TY L++ +C+ G
Sbjct: 514 GLCKSRRVEDASQLMDQMIMEGQK--PDKFTYNSLLTHFCRGG 554
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 136 KEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
+E+ + R + + L++M + +G + TS LI+ + L +E L + M
Sbjct: 87 EEILLRLGRSGSFDDMRKILEDM--KNSGCEMGTSPFLILIESYAQFELQDEILGVVHWM 144
Query: 196 -KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
F +PD + YN ++N L N +M + G + PDV T+ +LI + C+
Sbjct: 145 IDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIK--PDVSTFNVLIKALCR 201
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + +A M C PD+ Y +I+ LC+ G A LL +++ G P Y
Sbjct: 554 GDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAY 613
Query: 243 TYTI 246
I
Sbjct: 614 NPVI 617
>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
Length = 692
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
RG + L+++ RG + ++ + ++G V+EAL + F C PD
Sbjct: 206 RGGGFRSAVRVLEDLHARGCA--LDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPD 263
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
V +YN V+ LC + + L+E+M CPP++ T+ LIS C+ G+
Sbjct: 264 VVSYNAVLKGLCMAKRWGCVQELMEEMVR--MACPPNIVTFNTLISYLCRNGL 314
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ + GLV+ + +M + C PDV Y VIN C+ G ++A LL+ M G
Sbjct: 410 LVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACG 469
Query: 235 FRCPPDVYTYTILISSYCK 253
C P+ +YTI++ C
Sbjct: 470 --CKPNTISYTIVLKGLCS 486
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V + + L++M G V T T +I +EGL++EA+ M C+
Sbjct: 414 FCQNGLVDRVIELLEQMLEHGCMPDVITYTT--VINGFCKEGLIDEAVMLLKSMTACGCK 471
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P+ +Y +V+ LC + A L+ QM G CP + T+ LI+ CK G+
Sbjct: 472 PNTISYTIVLKGLCSAERWVDAEDLMSQMIQQG--CPLNPITFNTLINFLCKKGL 524
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+ L EG +N+ + F ++ R D YN VI++LC+ G +A L M G
Sbjct: 585 IASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSG 644
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+ TYTILI G
Sbjct: 645 --CVPNESTYTILIRGLASEG 663
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ ++EM R +VT +T LI L GL +M + C PD+ Y +I
Sbjct: 285 ELMEEMVRMACPPNIVTFNT---LISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATII 341
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ +C+ G+ A +L +M P + P+V Y L+ C
Sbjct: 342 DGICKEGHLEVAHEILNRM--PSYGLKPNVVCYNTLLKGLCS 381
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++ L G + +ALA M + C P Y+V++ A CR G F A +LE + G
Sbjct: 165 VVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG 224
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C DV +++++ C G
Sbjct: 225 --CALDVGNCNLVLNAICDQG 243
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
C D +N++++ C+ G ++ LLEQM G C PDV TYT +I+ +CK G+
Sbjct: 400 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHG--CMPDVITYTTVINGFCKEGL 454
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 148 VKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
V+ + LK+M G + +L++ STV I LG+ G +EAL M P+
Sbjct: 525 VEQAIELLKQMLVNGCSPDLISYSTV---IDGLGKAGKTDEALELLNVMVNKGMSPNTII 581
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y+ + +AL R G NK + + ++ R D Y +ISS CK G
Sbjct: 582 YSSIASALSREGRINKVIQMFDNIQDTTIR--SDAVLYNAVISSLCKRG 628
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D + +M ++G + T LI L ++GLV +A+ +M C PD+ +Y+ VI+
Sbjct: 495 DLMSQMIQQGCP--LNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVID 552
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L + G ++A LL M G P+ Y+ + S+ + G
Sbjct: 553 GLGKAGKTDEALELLNVMVNKGMS--PNTIIYSSIASALSREG 593
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I + +EG + A RM + +P+V YN ++ LC + + LL +M
Sbjct: 340 IIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMF--D 397
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
CP D T+ IL+ +C+ G+
Sbjct: 398 KDCPLDDVTFNILVDFFCQNGL 419
>gi|414868427|tpg|DAA46984.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
Length = 674
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T+ +I G V+ A F +M CRPD + YN +++ +CR G ++A L+
Sbjct: 179 STAIYNAVIAASVRAGAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALRLV 238
Query: 228 EQMELPGFRCPPDVYTYTILISSYC 252
+QME G R P+V TYT+L+ +C
Sbjct: 239 KQMERAGIR--PNVVTYTMLVDGFC 261
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
NV FLK + +G + T T LI L +++A F M ++ RP+V
Sbjct: 474 GNVHDAKAFLKMVME--HGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQ 531
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YNV+I+ LC G+ +KA LL +M++ G PD Y++ I S+C+
Sbjct: 532 TYNVLIHGLCSAGHVSKAIELLNKMKMDGI--TPDAYSFNAPILSFCR 577
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 5/140 (3%)
Query: 118 FYHWVERFF-HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLI 176
Y W RF HF + + +G R V + ++ R G V+ + L+
Sbjct: 95 LYVWASRFGQHFARDRSVRRALGDALLRRGPVVLSAALVADV--RSCGCEVSEELLCALV 152
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
+ G GL + A F ++ + RP YN VI A R G + A +QM P
Sbjct: 153 ESWGRLGLAHYAHEVFVQVPRLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQM--PADG 210
Query: 237 CPPDVYTYTILISSYCKYGM 256
C PD +TY L+ C+ G+
Sbjct: 211 CRPDCFTYNTLVHGVCRRGI 230
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EMS G V T V LI L G V++A+ +MK PD Y++N I + CR
Sbjct: 520 EMSEWGVRPNVQTYNV--LIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCR 577
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ KA+ L M G PD YTY LI + C
Sbjct: 578 MRKIEKAQKLFNDMSRYGV--SPDSYTYNALIKALC 611
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G L + + +I + G V AL T M++ P++ +N +IN ++GN +
Sbjct: 419 DGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHD 478
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYC 252
A+ L+ + G PDV T+T LI C
Sbjct: 479 AKAFLKMVMEHGLM--PDVITFTSLIDGLC 506
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
FA+ V+ + +K M G + LVT +T LI + G V++A A + +
Sbjct: 435 FAKAGEVERALETIKVMQESGFSPNLVTFNT---LINGYLKLGNVHDAKAFLKMVMEHGL 491
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV + +I+ LC + A +M G R P+V TY +LI C G
Sbjct: 492 MPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVR--PNVQTYNVLIHGLCSAG 544
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ + G+V+EAL +M++ RP+V Y ++++ C +A +LE+M
Sbjct: 217 TYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERM 276
Query: 231 ELPGFRCPPDVY 242
+ G Y
Sbjct: 277 KEKGVSATEATY 288
>gi|341605737|gb|AEK82971.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605739|gb|AEK82972.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605741|gb|AEK82973.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RXNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMXLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 82
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 83 FK--PDVVTYSVVVNGLCKNG 101
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRXNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 18 HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLIDGYAKSG 66
>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
Length = 414
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK + G V +AL RM +F C PD +N++++ LCR ++ +L +++ G
Sbjct: 88 VIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDG 147
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+V T+T +IS YCK G
Sbjct: 148 V-CMPNVVTFTSVISGYCKAG 167
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRC-RPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L+ L G V++ +A F R Q R PDV+++NVVI +CRVG KA L+E+M
Sbjct: 52 LMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMN-- 109
Query: 234 GFRCPPDVYTYTILISSYCK 253
F C PD T+ IL+ C+
Sbjct: 110 EFGCSPDTVTHNILVDGLCR 129
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIV--FARGNNVKGLWDFLKEMSRRGNGELVTT 169
+ KA E VER F + T +V R N V + L+ + R G +
Sbjct: 98 VQKALEL---VERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVC-MPNV 153
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T T +I + G + +A+A + M P+ YNV+IN +VG+ A + +Q
Sbjct: 154 VTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQ 213
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M RCPPDV T++ LI YC+ G
Sbjct: 214 MTR--LRCPPDVVTFSSLIDGYCRCG 237
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
+G + T T LI G+ G + A+ + +M + RC PDV ++ +I+ CR G +
Sbjct: 181 ASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLD 240
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A + M R P+VYT++I+I S CK
Sbjct: 241 DALRIWSDM--AQHRIQPNVYTFSIIIHSLCK 270
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV----YAYNVVINALCRVGNFNKARFL 226
T + +I L ++ +EA+ + + RPD+ + YN VI+ LC+ G ++A +
Sbjct: 260 TFSIIIHSLCKQNRSDEAIGL---LNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLI 316
Query: 227 LEQMELPGFRCPPDVYTYTILISSYC 252
+ ME G C PD YTYTILI YC
Sbjct: 317 RKGMEEKG--CRPDKYTYTILIIGYC 340
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I VL + G V+EA M++ CRPD Y Y ++I C ++A +M G
Sbjct: 300 VIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAG 359
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
C PD T IS K GM
Sbjct: 360 --CSPDSITVNCFISCLLKAGM 379
>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
Length = 716
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G+G T + LIK G++++A+ F M+ +PDV Y VI ALCR+G +
Sbjct: 391 GDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMD 450
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A QM G PD Y Y LI +C +G
Sbjct: 451 DAMEKFNQMIDQGV--APDKYAYHCLIQGFCTHG 482
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 175 LIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L+K E +EAL +R + C PDV++Y++++ +LC G +A LL M
Sbjct: 156 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 215
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G C PDV YT +I + K G
Sbjct: 216 GAVCSPDVVAYTTVIDCFFKEG 237
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL++M +G L T LI G EA+ F M++ PDV N+++ +
Sbjct: 280 FLRQMVNKG--VLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGS 337
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G +AR + + M + G PDV++Y I+++ Y G
Sbjct: 338 LCKYGKIKEARDVFDTMAMKGQN--PDVFSYKIMLNGYATKG 377
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D L+ M+ G T +I +EG VN+A F M Q PD+ Y+ V++
Sbjct: 207 DLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVH 266
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
ALC+ KA L QM G PD +TY LI Y G
Sbjct: 267 ALCKARAMGKAEAFLRQMVNKGVL--PDNWTYNNLIYGYSSTG 307
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 145 GNNVKGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
G + G W KEM R + L T+ L+ L + G + EA F M
Sbjct: 302 GYSSTGQWKEAVRVFKEMRR--HSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQ 359
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PDV++Y +++N G L + M G PD+YT+++LI +Y GM
Sbjct: 360 NPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGI--APDIYTFSVLIKAYANCGM 413
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R +G T T +I L G +++A+ F +M PD YAY+ +I C G+
Sbjct: 425 RDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSL 484
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
KA+ L+ ++ G R D+ ++ +I++ CK G
Sbjct: 485 LKAKELILEIMNNGMRL--DIVFFSSIINNLCKLG 517
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + +V D KEM +RG +LVT S+V + L + + +A A +M
Sbjct: 233 FFKEGDVNKACDLFKEMVQRGIPPDLVTYSSV---VHALCKARAMGKAEAFLRQMVNKGV 289
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD + YN +I G + +A + ++M PDV T +L+ S CKYG
Sbjct: 290 LPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSIL--PDVVTLNMLMGSLCKYG 342
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y+++++ C VG KA + + M G P+V Y L++ YCK G
Sbjct: 536 PDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIE--PNVVVYGTLVNGYCKIG 587
>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g02150-like [Cucumis
sativus]
Length = 822
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 101/262 (38%), Gaps = 43/262 (16%)
Query: 26 VPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTP-------- 77
V FD+ LA P + + L+ P+ + + G Q GFRH T
Sbjct: 62 VLFDSALA--------PIWVSKILLGLREDPKLALKFFKWAGSQVGFRHTTESYCIIVHL 113
Query: 78 -LKQRILKKEADN----IANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNE 132
+ R+ D I N+ + +G + N + F F
Sbjct: 114 VFRARMYTDAHDTVKEVIMNSRMDMGFPVCNIFDMLWSTRNICVSGSGVFDVLFSVFVEL 173
Query: 133 VTCKEMGIVFARGNNVKGLWD------FLKEMSRRGNGELV--------------TTSTV 172
+E F+R N + L L +S+ GNG+LV + T
Sbjct: 174 GLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTY 233
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+I L +EG + + F +M++ PDV YN +I+ +VG+ + L +M+
Sbjct: 234 NVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKD 293
Query: 233 PGFRCPPDVYTYTILISSYCKY 254
G C PD+ TY LI+ YCK+
Sbjct: 294 VG--CVPDIITYNGLINCYCKF 313
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI G+ G + E + F MK C PD+ YN +IN C+ +A +M
Sbjct: 267 TYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEM 326
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
+ G + P+V TY+ LI ++CK GM
Sbjct: 327 KNNGLK--PNVVTYSTLIDAFCKEGM 350
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F G + L +F +EM G + T V LI L E G+V A+ F RM +
Sbjct: 521 FKAGKSSDAL-NFFQEMQDVGVEATIVTYCV--LIDGLCEAGIVELAVDYFCRMLSLGLQ 577
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V Y +I+ LC A+ L ++M+ G PD+ +T LI K+G
Sbjct: 578 PNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGM--TPDITAFTALIDGNLKHG 629
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+++ EM + NG T + LI +EG++ A+ M++ P+ + Y +I
Sbjct: 320 FEYFSEM--KNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLI 377
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A C+ GN +A LL M G + ++ TYT L+ CK G
Sbjct: 378 DANCKAGNLTEAWKLLNDMLQAGVKL--NIVTYTALLDGLCKAG 419
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 78/208 (37%), Gaps = 62/208 (29%)
Query: 107 KVTLGINK----ATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEM--- 158
K+ LG+ + A +F+ W F H E C + +VF R D +KE+
Sbjct: 75 KILLGLREDPKLALKFFKWAGSQVGFRHTTESYCIIVHLVF-RARMYTDAHDTVKEVIMN 133
Query: 159 SRRGNG-------ELVTTSTVTC---------LIKVLGEEGLVNEALATFYRMKQFR--- 199
SR G +++ ++ C L V E GL+ EA F RM+ FR
Sbjct: 134 SRMDMGFPVCNIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLP 193
Query: 200 --------------------------------CRPDVYAYNVVINALCRVGNFNKARFLL 227
P V+ YNV+I+ LC+ G+ +R L
Sbjct: 194 KARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLF 253
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
QM G PDV TY LI Y K G
Sbjct: 254 VQMREMGL--SPDVVTYNSLIDGYGKVG 279
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 172 VTCLIKVLGEEGLVN---------EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
V C+ ++ GL+N A F MK +P+V Y+ +I+A C+ G
Sbjct: 294 VGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQG 353
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A LL M G P+ +TYT LI + CK G
Sbjct: 354 AIKLLXDMRRTGL--LPNEFTYTSLIDANCKAG 384
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 4/123 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + F + ++G L +M R G L T T LI + G + EA
Sbjct: 334 NVVTYSTLIDAFCKEGMMQGAIKLLXDMRR--TGLLPNEFTYTSLIDANCKAGNLTEAWK 391
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M Q + ++ Y +++ LC+ G +A + M G P+ YT L+
Sbjct: 392 LLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGI--SPNQQVYTALVHG 449
Query: 251 YCK 253
Y K
Sbjct: 450 YIK 452
>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
Length = 722
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI+ E G+V+ AL M Q PD Y YN +I C VG +KAR L Q+E+
Sbjct: 345 TILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSL--QLEI 402
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
C P TYTILI C+ G+
Sbjct: 403 SKNDCFPTSCTYTILICGMCRNGL 426
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 40/171 (23%)
Query: 118 FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK 177
F+ W R F + VT + + A+ + W L+E+ + + + T + LI
Sbjct: 83 FFIWTTRR-RSFRSWVTHNLVIDMLAKDDGFDTYWKILEEL--KNSNIQIPPPTFSVLIA 139
Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYN----------------------------- 208
+ G+ +A+ +F +MK F C+PDV+ YN
Sbjct: 140 AYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNP 199
Query: 209 ------VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+++N LC+ G + A + ++M G PP+ YTI++S C+
Sbjct: 200 NRATFVILLNGLCKNGKTDDALKMFDEMTQKGI--PPNTMIYTIILSGLCQ 248
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 12/165 (7%)
Query: 96 VLGPAAYRNPQKVTLGINKATEFYHWVERFFHF-FHNEVTCKEMGIVFARGNNVKGLWDF 154
VLG Y + + E W + F +V + + RG G+ D+
Sbjct: 303 VLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVV---LYTILIRGFCEVGMVDY 359
Query: 155 ----LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
L +M++RG T LIK + GL+++A + + + C P Y ++
Sbjct: 360 ALNMLNDMTQRGLSP--DTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTIL 417
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I +CR G ++AR + QME G C P + T+ LI CK G
Sbjct: 418 ICGMCRNGLLDEARQIFNQMENLG--CSPSIMTFNALIDGLCKAG 460
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T+ T T LI + GL++EA F +M+ C P + +N +I+ LC+ G +AR L
Sbjct: 410 TSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLF 469
Query: 228 EQMEL 232
+ME+
Sbjct: 470 YKMEI 474
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T L+ L + G ++AL F M Q P+ Y ++++ LC+ + LL
Sbjct: 202 ATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNT 261
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M++ G C PD T L+ +CK G
Sbjct: 262 MKVSG--CCPDSITCNALLDGFCKLG 285
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 4/126 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+ +TC + F + + + L+ + G ++ + LI L +E
Sbjct: 270 DSITCNALLDGFCKLGQIDEAFALLQLFEKEGY--VLGIKGYSSLIDGLFRAKRYDEVQE 327
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+M + PDV Y ++I C VG + A +L M G PD Y Y LI
Sbjct: 328 WCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGL--SPDTYCYNALIKG 385
Query: 251 YCKYGM 256
+C G+
Sbjct: 386 FCDVGL 391
>gi|341606829|gb|AEK83517.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 208
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 111 RFNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 170
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
B+A L ++ME C VYTYTILIS
Sbjct: 171 BEAMTLFKRMEEEE-GCDQTVYTYTILISG 199
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ +I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M
Sbjct: 18 SLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMID 77
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
GF+ PDV TY+++++ CK G
Sbjct: 78 EGFK--PDVVTYSVVVNGLCKNG 98
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 34 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 91
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 92 NGLCKNGRVEEALDYFQTCRFNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 149
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 150 CTRDSYCYNALIDALTKHG 168
>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
Length = 759
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
++VT + + RG + L L E + +G + T + +I + GL +EA+A
Sbjct: 258 DDVTYNTLIATYCRGGQMH-LGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIA 316
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F M+ PD YN +++ R+GNF++A + ME GF D+ TY L+ S
Sbjct: 317 LFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGF--AKDIVTYNALLDS 374
Query: 251 YCKYG 255
Y K G
Sbjct: 375 YGKQG 379
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+EM +RG + T + LI + G +A+A F +K+ +PDV Y+ +++
Sbjct: 387 LLEEMKQRGASPNILT--YSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDG 444
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C+ G+ ++A LLE+M G R P+V TY L+ +Y +
Sbjct: 445 CCKNGSPDEALALLEEMADNGIR--PNVITYNSLLDAYGR 482
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ G++G EA++ MKQ P++ Y+ +I+A C+ G A L + +
Sbjct: 367 TYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDV 426
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G + PDV Y+ L+ CK G
Sbjct: 427 KKAGLQ--PDVVLYSTLVDGCCKNG 449
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
GN V +S LI G G + +A+ F MK C+P++ YN VI+A + G++
Sbjct: 152 GNNVFVYSS----LICAYGRSGKLAKAVEIFEAMKVV-CKPNLVVYNAVIDACSKGGDYP 206
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISS 250
A + +M G PD T+ LIS+
Sbjct: 207 TALRIFREMLEQGM--SPDRITFNTLISA 233
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI G E F M++ D YN +I CR G + L+E M
Sbjct: 226 TFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETM 285
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
P V TY+ +I Y K G+
Sbjct: 286 A-KSSGIEPSVITYSTMIDGYAKLGL 310
>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Brachypodium distachyon]
Length = 554
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R ++ EM R G T LI +EG VN + + M+
Sbjct: 265 FCRTGRMENAVKMFNEM--RDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVM 322
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ AYN ++N LCR N A ++E+M+ G + PD TYT LI CK G
Sbjct: 323 PDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLK--PDKVTYTTLIDGCCKDG 374
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T T +I +G V M+ +P V YNV++N LC++G A LL
Sbjct: 431 TTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHA 490
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M G PD TY IL+ CK+G
Sbjct: 491 MLNIGVS--PDDITYNILLDGQCKHG 514
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L + G +A M + PD Y +VI+A CR G+ LL++M
Sbjct: 397 TYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEM 456
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G + P V TY ++++ CK G
Sbjct: 457 QNKGKK--PGVVTYNVIMNGLCKLG 479
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 187 EALATFYR-MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+A+ Y+ M +PDVY Y +I CR G A + +M G P+ +T
Sbjct: 237 DAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVN--PNAVVFT 294
Query: 246 ILISSYCKYG 255
LI ++CK G
Sbjct: 295 TLIDAHCKEG 304
>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Vitis vinifera]
Length = 798
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI+ E G+V+ AL M Q PD Y YN +I C VG +KAR L Q+E+
Sbjct: 345 TILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSL--QLEI 402
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
C P TYTILI C+ G+
Sbjct: 403 SKNDCFPTSCTYTILICGMCRNGL 426
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 40/171 (23%)
Query: 118 FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK 177
F+ W R F + VT + + A+ + W L+E+ + + + T + LI
Sbjct: 83 FFIWTTRR-RSFRSWVTHNLVIDMLAKDDGFDTYWKILEEL--KNSNIQIPPPTFSVLIA 139
Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYN----------------------------- 208
+ G+ +A+ +F +MK F C+PDV+ YN
Sbjct: 140 AYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNP 199
Query: 209 ------VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+++N LC+ G + A + ++M G PP+ YTI++S C+
Sbjct: 200 NRATFVILLNGLCKNGKTDDALKMFDEMTQKGI--PPNTMIYTIILSGLCQ 248
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 12/165 (7%)
Query: 96 VLGPAAYRNPQKVTLGINKATEFYHWVERFFHF-FHNEVTCKEMGIVFARGNNVKGLWDF 154
VLG Y + + E W + F +V + + RG G+ D+
Sbjct: 303 VLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVV---LYTILIRGFCEVGMVDY 359
Query: 155 ----LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
L +M++RG T LIK + GL+++A + + + C P Y ++
Sbjct: 360 ALNMLNDMTQRGLSP--DTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTIL 417
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I +CR G ++AR + QME G C P + T+ LI CK G
Sbjct: 418 ICGMCRNGLLDEARQIFNQMENLG--CSPSIMTFNALIDGLCKAG 460
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+G ++ T+++ +++ L E GL+ +A ++ PD+ YNV+IN C+ N
Sbjct: 486 QGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNI 545
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSY 251
N A L +++L G PD TY LI +
Sbjct: 546 NGAFKLFRELQLKGH--SPDSVTYGTLIDGF 574
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T+ T T LI + GL++EA F +M+ C P + +N +I+ LC+ G +AR L
Sbjct: 410 TSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLF 469
Query: 228 EQMEL 232
+ME+
Sbjct: 470 YKMEI 474
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T L+ L + G ++AL F M Q P+ Y ++++ LC+ + LL
Sbjct: 202 ATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNT 261
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M++ G C PD T L+ +CK G
Sbjct: 262 MKVSG--CCPDSITCNALLDGFCKLG 285
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PDV Y ++I C VG + A +L M G PD Y Y LI +C G+
Sbjct: 338 EPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGL--SPDTYCYNALIKGFCDVGL 391
>gi|255561437|ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539120|gb|EEF40716.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 629
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+T ++++L G V EA+ R++ DV AYN ++ CR+G A L++M
Sbjct: 281 TMTKVVEILCNAGRVTEAVEMLERVEYKGGLVDVVAYNTLLRGFCRLGKIKVAHRFLKEM 340
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
E G C P+V TY ILIS +C GM
Sbjct: 341 ERKG--CLPNVETYNILISGFCDSGM 364
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 153 DFLKEMSRR---GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
D +E R+ G+G T L+K L + + MK +P+ YN
Sbjct: 159 DVAREFYRKQMMGSGVQGDDYTFAILMKGLCLTNRIGDGFRLLQVMKSRGVKPNAVVYNT 218
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+++ALC+ G +AR L++++E P+ T+ +LI++YCK
Sbjct: 219 LLHALCKNGKVGRARSLMDEIE------EPNDVTFNVLIAAYCK 256
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + N++ ++ + EM G+G + S LI +G AL M C
Sbjct: 499 FCQEGNLREAFELMNEMV--GHGYFLVASGFNALIHGFCGQGKDESALKLLDDMVGRGCV 556
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
PD Y+ +I+ALCR GNF KA + QM G PD T+ L+
Sbjct: 557 PDRGTYSPLIDALCRKGNFQKALSIFNQMIEKGI--TPDSSTWNSLL 601
>gi|125586172|gb|EAZ26836.1| hypothetical protein OsJ_10752 [Oryza sativa Japonica Group]
Length = 523
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 153 DFLKEMSRRGNGELVTT--STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+ L EM RG V T + V CL K G V A+ F M+ C P + YN +
Sbjct: 184 EALDEMVARGFRPTVATFSAVVGCLCK----RGRVTRAMEVFDTMRAVGCEPTIRTYNSL 239
Query: 211 INALCRVGNFNKARFLLEQM-ELPGFRCPPDVYTYTILISSYCKYG 255
I LC VG +A LL ++ E P + PD+YT+TI++ +CK G
Sbjct: 240 IGGLCYVGRLEEALDLLNKLKESP--KQTPDIYTFTIVLDGFCKVG 283
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
++ +R +G L T S ++ L G + A+A F ++ PD +Y + LCR
Sbjct: 117 DLLQRDDGAL-TVSDYNDILSALAMAGDHDSAVALFRALRPNGVTPDAQSYATAVQCLCR 175
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
G ++A+ L++M GFR P V T++ ++ CK G T
Sbjct: 176 KGAPDEAKEALDEMVARGFR--PTVATFSAVVGCLCKRGRVT 215
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQF-RCRPDVYAYNVVINALCRVGNFNKARFL 226
T T LI L G + EAL ++K+ + PD+Y + +V++ C+VG ++A +
Sbjct: 232 TIRTYNSLIGGLCYVGRLEEALDLLNKLKESPKQTPDIYTFTIVLDGFCKVGRTDEATPI 291
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
G P ++TY L++ +CK G
Sbjct: 292 FHDAVRNGL--SPTIFTYNALLNGHCKEG 318
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + ++ L +G +EA M RP V ++ V+ LC+ G
Sbjct: 155 RPNGVTPDAQSYATAVQCLCRKGAPDEAKEALDEMVARGFRPTVATFSAVVGCLCKRGRV 214
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A + + M G C P + TY LI C G
Sbjct: 215 TRAMEVFDTMRAVG--CEPTIRTYNSLIGGLCYVG 247
>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 740
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 183 GLVNEALATFYR-MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
G ++EA A + M C PD++ YN +I LC+ G AR L+ +M++ G C P+V
Sbjct: 385 GRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKG--CEPNV 442
Query: 242 YTYTILISSYCKYG 255
TYTILI +CK G
Sbjct: 443 ITYTILIDRFCKEG 456
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCRP 202
GN KGL F MS+ N + ++C LI L G + AL M P
Sbjct: 596 GNIEKGLALFEDMMSKGLN-----PNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTP 650
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
D+ YN +IN LC+ G +A L +++++ G PD TY LIS +CK GM
Sbjct: 651 DIVTYNSLINGLCKTGRAQEALNLFDKLQVEGI--CPDAITYNTLISWHCKEGM 702
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N ++C + R N++ +FL++M RG ++VT ++ LI L + G EAL
Sbjct: 616 NNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNS---LINGLCKTGRAQEAL 672
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
F +++ PD YN +I+ C+ G F+ A LL + GF P+ T+ IL+S
Sbjct: 673 NLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGF--IPNEVTWYILVS 730
Query: 250 SYCKYGMQ 257
++ K G Q
Sbjct: 731 NFIKEGDQ 738
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L EMS G G + CLI L ++ V +AL F M C+PD++ +N +I
Sbjct: 463 NVLDEMS--GKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIF 520
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+V F +A L + M L G + TY LI ++ + G
Sbjct: 521 GLCKVNKFEEALGLYQDMLLEGV--IANTITYNTLIHAFLRRG 561
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
N V LK+M+R G V + V LI L + G VNE L M C PDV
Sbjct: 249 NEVDSACALLKDMTRHG---CVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDV 305
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+N I+ LC++ ++A L+++M L GF P+ +TY +L+ C+ G
Sbjct: 306 NTFNDAIHGLCKMLRIHEAAKLVDRMLLRGF--TPNSFTYGVLMHGLCRMG 354
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LIK L G + + LA F M P+ + N++IN LCR GN A L M G
Sbjct: 588 LIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRG 647
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD+ TY LI+ CK G
Sbjct: 648 L--TPDIVTYNSLINGLCKTG 666
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T LI G + EAL M C D YN +I ALCR GN K
Sbjct: 542 GVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKG 601
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L E M G P+ + ILI+ C+ G
Sbjct: 602 LALFEDMMSKGLN--PNNISCNILINGLCRTG 631
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L ++G + A M+ C P+V Y ++I+ C+ G +AR +L++M
Sbjct: 409 TYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEM 468
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G + Y LIS+ CK
Sbjct: 469 SGKGL--ALNAVGYNCLISALCK 489
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V GN K + + EM +G V T V ++K L V+ A A M + C
Sbjct: 209 VLLAGNCPKVVPNVFYEMLSKGISPTVYTFGV--VMKALCLVNEVDSACALLKDMTRHGC 266
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+ Y +I+AL +VG N+ LLE+M L G C PDV T+ I CK
Sbjct: 267 VPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMG--CIPDVNTFNDAIHGLCK 317
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V +N +IN G ++A+ ++ + L C PD++TY LI CK G
Sbjct: 369 PNVVLFNTLINGYVSRGRLDEAKAVMHESMLS-VGCGPDIFTYNTLILGLCKKG 421
>gi|115452873|ref|NP_001050037.1| Os03g0336000 [Oryza sativa Japonica Group]
gi|108708021|gb|ABF95816.1| expressed protein [Oryza sativa Japonica Group]
gi|113548508|dbj|BAF11951.1| Os03g0336000 [Oryza sativa Japonica Group]
gi|125543773|gb|EAY89912.1| hypothetical protein OsI_11461 [Oryza sativa Indica Group]
gi|215712300|dbj|BAG94427.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 545
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 153 DFLKEMSRRGNGELVTT--STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+ L EM RG V T + V CL K G V A+ F M+ C P + YN +
Sbjct: 184 EALDEMVARGFRPTVATFSAVVGCLCK----RGRVTRAMEVFDTMRAVGCEPTIRTYNSL 239
Query: 211 INALCRVGNFNKARFLLEQM-ELPGFRCPPDVYTYTILISSYCKYG 255
I LC VG +A LL ++ E P + PD+YT+TI++ +CK G
Sbjct: 240 IGGLCYVGRLEEALDLLNKLKESP--KQTPDIYTFTIVLDGFCKVG 283
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
++ +R +G L T S ++ L G + A+A F ++ PD +Y + LCR
Sbjct: 117 DLLQRDDGAL-TVSDYNDILSALAMAGDHDSAVALFRALRPNGVTPDAQSYATAVQCLCR 175
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
G ++A+ L++M GFR P V T++ ++ CK G T
Sbjct: 176 KGAPDEAKEALDEMVARGFR--PTVATFSAVVGCLCKRGRVT 215
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQF-RCRPDVYAYNVVINALCRVGNFNKARFL 226
T T LI L G + EAL ++K+ + PD+Y + +V++ C+VG ++A +
Sbjct: 232 TIRTYNSLIGGLCYVGRLEEALDLLNKLKESPKQTPDIYTFTIVLDGFCKVGRTDEATPI 291
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
G P ++TY L++ +CK G
Sbjct: 292 FHDAVRNGL--SPTIFTYNALLNGHCKEG 318
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + ++ L +G +EA M RP V ++ V+ LC+ G
Sbjct: 155 RPNGVTPDAQSYATAVQCLCRKGAPDEAKEALDEMVARGFRPTVATFSAVVGCLCKRGRV 214
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A + + M G C P + TY LI C G
Sbjct: 215 TRAMEVFDTMRAVG--CEPTIRTYNSLIGGLCYVG 247
>gi|224576625|gb|ACN56986.1| At1g03560-like protein [Capsella rubella]
gi|224576631|gb|ACN56989.1| At1g03560-like protein [Capsella rubella]
gi|224576633|gb|ACN56990.1| At1g03560-like protein [Capsella rubella]
Length = 196
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 84 RFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 143
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N+A L ++ME C VYTYTILIS K
Sbjct: 144 NEAMTLFKRMEEEE-GCDQTVYTYTILISGMFK 175
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +NE A F M + +P+V Y V+I+ + G+ A LL +M GF+ PDV
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK--PDVV 58
Query: 243 TYTILISSYCKYG 255
TY+++++ CK G
Sbjct: 59 TYSVVVNGLCKNG 71
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 39/133 (29%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC-- 215
M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+N LC
Sbjct: 13 MIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKN 70
Query: 216 ---------------------------------RVGNFNKARFLLEQMELPGFRCPPDVY 242
+ G ++A L E+M G C D Y
Sbjct: 71 GRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG--CTRDSY 128
Query: 243 TYTILISSYCKYG 255
Y LI + K+G
Sbjct: 129 CYNALIDALTKHG 141
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
LKEM G V T T+ I+VLG G ++EA F RM C PD+ Y V+I+A
Sbjct: 249 LLKEMEDLGLRPNVYTFTIC--IRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDA 306
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC G A+ L +M+ G + PD Y L+ + +G
Sbjct: 307 LCNAGQLENAKELFVKMKANGHK--PDQVIYITLLDKFNDFG 346
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
A+ NN+ DF ++ + T T LI L + G + EA+ F M + C+
Sbjct: 868 LAKSNNLDKALDFFYDLV--SSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCK 925
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ +N++IN ++G+ A L ++M G R PD+ +YTIL+ C G
Sbjct: 926 PNCAIFNILINGYGKIGDTETACQLFKRMVNEGIR--PDLKSYTILVDCLCLAG 977
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+ VT M +++ V + L EM R NG V LI L + G V+EA
Sbjct: 506 DSVTYNMMMKCYSKVGQVDEAVNLLSEMIR--NGCEPDVIVVNSLIDSLYKAGRVDEAWQ 563
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F RMK + P V YN +++ L + G KA L E M +C P+ ++ L+
Sbjct: 564 MFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEK--KCSPNTISFNTLLDC 621
Query: 251 YCK 253
+CK
Sbjct: 622 FCK 624
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
WD K+M G T L+ V G+ G + E + M RC+PD YN+VI
Sbjct: 808 WDLFKDMKNVGCAP--DAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVI 865
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++L + N +KA + FR P TY LI K G
Sbjct: 866 SSLAKSNNLDKALDFFYDLVSSDFRPTP--RTYGPLIDGLAKVG 907
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V R + ++ + M G G + T TV LI L G + A F +MK
Sbjct: 271 VLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTV--LIDALCNAGQLENAKELFVKMKANGH 328
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+PD Y +++ G+ + + QME G+ PDV T+TIL+ CK
Sbjct: 329 KPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYM--PDVVTFTILVDVLCK 379
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTS--TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
E+ RR E + S T + L+ LG++ + M+ RP+VY + + I L
Sbjct: 213 EVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVL 272
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R G ++A + +M+ G C PD+ TYT+LI + C G
Sbjct: 273 GRAGKIDEAYEIFRRMDDEG--CGPDLVTYTVLIDALCNAG 311
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 150 GLWDFLKEM--SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G D KE +G + T T L+ VL + +EA ATF M++ P+++ Y
Sbjct: 346 GDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTY 405
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N +I L R G A LL ME G + P YTY I I + K G
Sbjct: 406 NTLICGLLRAGRIEDALKLLGTMESVGVQ--PTAYTYNIFIDYFGKSG 451
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 15/146 (10%)
Query: 120 HWVERFFHFFHN--EVTCKEMGIVF-------ARGNNVKGLWDFLKEM-SRRGNGELVTT 169
H+ E+ + F + V C F + + L++ KEM SRR + +T
Sbjct: 802 HYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITY 861
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+ V I L + +++AL FY + RP Y +I+ L +VG +A L E+
Sbjct: 862 NIV---ISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEE 918
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M + C P+ + ILI+ Y K G
Sbjct: 919 M--SDYGCKPNCAIFNILINGYGKIG 942
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I LG+ + EALA + M+ PD+Y YN ++ L G +A+ + E+++L G
Sbjct: 1004 IINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAG 1063
Query: 235 FRCPPDVYTYTILISSY 251
PDV+TY LI Y
Sbjct: 1064 LE--PDVFTYNALIRGY 1078
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L+ LG+EG V +A+ F M + +C P+ ++N +++ C+ A +
Sbjct: 576 TVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMF 635
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
+M + C PDV TY +I K
Sbjct: 636 SKMTV--MDCKPDVLTYNTVIYGLIK 659
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T ++ CLI L E +A F MK C PD + +N+++ + G + L
Sbjct: 787 TLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELY 846
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++M RC PD TY I+ISS K
Sbjct: 847 KEM--ISRRCKPDAITYNIVISSLAK 870
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ T L+ L G V+EAL F +K PD AYN +IN L + +A L +M
Sbjct: 965 SYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEM 1024
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
G PD+YTY L+ + GM
Sbjct: 1025 RNRGI--VPDLYTYNSLMLNLGLAGM 1048
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G ++ + LI +L + G EAL + RM +P + Y+ ++ AL + +
Sbjct: 184 RKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDS 243
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL++ME G R P+VYT+TI I + G
Sbjct: 244 EMVMVLLKEMEDLGLR--PNVYTFTICIRVLGRAG 276
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T I G+ G +A+ TF +MK P++ A N + +L +G +A+ +
Sbjct: 436 TAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMF 495
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G PD TY +++ Y K G
Sbjct: 496 NGLRENGL--APDSVTYNMMMKCYSKVG 521
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L E G + EA F +++ PD YN+++ +VG ++A LL +M G C
Sbjct: 482 LAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNG--CE 539
Query: 239 PDVYTYTILISSYCKYG 255
PDV LI S K G
Sbjct: 540 PDVIVVNSLIDSLYKAG 556
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G+ G A F RM RPD+ +Y ++++ LC G ++A + +++ G
Sbjct: 934 LINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTG 993
Query: 235 FRCPPDVYTYTILISSYCK 253
PD Y +I+ K
Sbjct: 994 L--DPDFIAYNRIINGLGK 1010
>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALAT 191
C +M +F + N + W EM R + +S VT +I VL +EG + +A
Sbjct: 158 ACNDMLSLFLKSNRTEKAWVLYAEMFRM----RIKSSVVTFNIMINVLCKEGKLKKAKEF 213
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
M+ +P+V YN +I+ C G AR + + M+ G + PD YTY IS
Sbjct: 214 IGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVK--PDSYTYGSFISGM 271
Query: 252 CKYG 255
CK G
Sbjct: 272 CKEG 275
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ N++ +D+ +M R G + T ST LI L + ++EA M +
Sbjct: 306 YCNKGNLEMAFDYRDKMVREG--LMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLV 363
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD YN++IN CR GN KA L ++M G + P TYT LI K G
Sbjct: 364 PDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQ--PTRVTYTSLIYVLSKRG 415
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++ A A M Q + PD +N ++ CR G AR L+E+M+ G + PD
Sbjct: 450 GNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIK--PDHI 507
Query: 243 TYTILISSYCKYG 255
+Y LIS Y K G
Sbjct: 508 SYNTLISGYSKRG 520
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G V A F MK +PD Y Y I+ +C+ G +A +LE+M+ G R P
Sbjct: 240 GRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLR--PTAV 297
Query: 243 TYTILISSYCKYG 255
TY LI YC G
Sbjct: 298 TYNTLIDGYCNKG 310
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
RG++ +D +K G G + ++ + + +A + M + R +
Sbjct: 134 LKRGDDAFECFDMMK-----GKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIK 188
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V +N++IN LC+ G KA+ + ME G + P+V TY +I YC G
Sbjct: 189 SSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIK--PNVVTYNTIIHGYCSRG 240
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R NVK + EM +G T T T LI VL + G + +A F ++ +
Sbjct: 376 YCRCGNVKKAFTLHDEMISKGIQP--TRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIF 433
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ +N +I+ C GN ++A +L++M+ + PD T+ L+ C+ G
Sbjct: 434 PDLIMFNALIDGHCANGNMDRAFAMLKEMD--QMKVVPDEVTFNTLMQGRCREG 485
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T I + +EG + EA +MK+ RP YN +I+ C GN A ++M
Sbjct: 263 TYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKM 322
Query: 231 ELPGFRCPPDVYTYTILISS 250
G P V TY +LI +
Sbjct: 323 VREGLM--PTVSTYNMLIHA 340
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
EG V A MK +PD +YN +I+ + G+ A + ++M GF P +
Sbjct: 484 EGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFN--PTL 541
Query: 242 YTYTILISSYCK 253
TY LI CK
Sbjct: 542 LTYNALIQGLCK 553
>gi|15239161|ref|NP_201383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170571|sp|Q9FH87.1|PP447_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g65820
gi|9758569|dbj|BAB09050.1| unnamed protein product [Arabidopsis thaliana]
gi|332010728|gb|AED98111.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 637
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 31/227 (13%)
Query: 34 ASTTKTQNPFTIESVADVLKS---IPRFFFQSPRS--IGRQTGFRHRTPLKQRILKKEAD 88
+ +T+N E +DV KS + +F + P+ ++G R L +R+L + D
Sbjct: 66 SHNDRTKNSKYDEFASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGD 125
Query: 89 NIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNV 148
G YR F+ W + + H+ K M + ++
Sbjct: 126 A--------GNLGYR--------------FFVWAAKQPRYCHSIEVYKSMVKILSKMRQF 163
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
+W ++EM R+ N +L+ L++ +V +A+ M +F PD Y +
Sbjct: 164 GAVWGLIEEM-RKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFG 222
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+++ALC+ G+ A L E M + R P ++ +T L+ +C+ G
Sbjct: 223 CLLDALCKHGSVKDAAKLFEDMRM---RFPVNLRYFTSLLYGWCRVG 266
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+A + +D L++M RRG + T LI+ L + + EA+ F M+++ C
Sbjct: 297 YANAGKMADAYDLLRDMRRRGFEP--NANCYTVLIQALCKVDRMEEAMKVFVEMERYECE 354
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
DV Y +++ C+ G +K +L+ M G P TY ++ ++ K
Sbjct: 355 ADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLM--PSELTYMHIMVAHEK 404
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ G + +A M++ P+ Y V+I ALC+V +A + +ME
Sbjct: 291 TNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEME- 349
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+ C DV TYT L+S +CK+G
Sbjct: 350 -RYECEADVVTYTALVSGFCKWG 371
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
E L +M+Q PD+ YNVVI C++G +A L +ME G P V T+
Sbjct: 409 EECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGL--SPGVDTFV 466
Query: 246 ILISSYCKYG 255
I+I+ G
Sbjct: 467 IMINGLASQG 476
>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 418
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 153 DFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
+ EM RG NG T T LI V + G+V+ A+ + +M PD+ YN
Sbjct: 227 ELFNEMLDRGLVPNG-----VTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNT 281
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+I LC+ G+ + R L+++M + G + PD TYT LI CK G
Sbjct: 282 LIYGLCKKGDLKQVRALIDEMSMNGLK--PDKITYTTLIDGCCKEG 325
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193
TC+++ + K +WDF KE+ G + + ++ +EG + A + F
Sbjct: 103 TCRKVLEHLMKLKYFKLVWDFYKEILECGYPASLYFFNI--VMHRFCKEGEMRRAQSVFD 160
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ ++ RP V ++N ++N R+G+ ++ L M G + PDVYTY++LI+ CK
Sbjct: 161 AITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQ--PDVYTYSVLINGLCK 218
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++K + + EMS NG T T LI +EG + A RM + R
Sbjct: 286 LCKKGDLKQVRALIDEMSM--NGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIR 343
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D AY +++ LC+ G + A + +M G + PD TYT++I+ +CK G
Sbjct: 344 LDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLK--PDNGTYTMIINEFCKKG 395
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++E M +PDVY Y+V+IN LC+ ++A L +M G P+
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGL--VPNGV 242
Query: 243 TYTILISSYCKYGM 256
T+T LI +CK GM
Sbjct: 243 TFTTLIDVHCKNGM 256
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ L +EG ++A F M +PD Y ++IN C+ G+ A LL++M+
Sbjct: 350 TALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQR 409
Query: 233 PG 234
G
Sbjct: 410 DG 411
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
LKEM G V T T+ I+VLG G ++EA F RM C PD+ Y V+I+A
Sbjct: 249 LLKEMEDLGLRPNVYTFTIC--IRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDA 306
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC G A+ L +M+ G + PD Y L+ + +G
Sbjct: 307 LCNAGQLENAKELFVKMKANGHK--PDQVIYITLLDKFNDFG 346
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+ VT M +++ V + L EM R NG V LI L + G V+EA
Sbjct: 506 DSVTYNMMMKCYSKVGQVDEAVNLLSEMIR--NGCEPDVIVVNSLIDSLYKAGRVDEAWQ 563
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F RMK + P V YN +++ L + G KA L E M +C P+ ++ L+
Sbjct: 564 MFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXK--KCSPNTISFNTLLDC 621
Query: 251 YCK 253
+CK
Sbjct: 622 FCK 624
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
A+ NN+ DF ++ + T T LI L + G + EA+ F M + C+
Sbjct: 868 LAKSNNLDKALDFFYDLV--SSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCK 925
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ +N++IN ++G+ A L ++M G R PD+ +YTIL+ C G
Sbjct: 926 PNCAIFNILINGYGKIGDTETACQLFKRMVNEGIR--PDLKSYTILVDCLCLAG 977
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
WD K+M G T L+ V G+ G + E + M RC+PD YN+VI
Sbjct: 808 WDLFKDMKNVGCAP--DAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVI 865
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++L + N +KA + FR P TY LI K G
Sbjct: 866 SSLAKSNNLDKALDFFYDLVSSDFRPTP--RTYGPLIDGLAKVG 907
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V R + ++ + M G G + T TV LI L G + A F +MK
Sbjct: 271 VLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTV--LIDALCNAGQLENAKELFVKMKANGH 328
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+PD Y +++ G+ + + QME G+ PDV T+TIL+ CK
Sbjct: 329 KPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYM--PDVVTFTILVDVLCK 379
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTS--TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
E+ RR E + S T + L+ LG++ + M+ RP+VY + + I L
Sbjct: 213 EVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVL 272
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R G ++A + +M+ G C PD+ TYT+LI + C G
Sbjct: 273 GRAGKIDEAYEIFRRMDDEG--CGPDLVTYTVLIDALCNAG 311
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 15/146 (10%)
Query: 120 HWVERFFHFFHN--EVTCKEMGIVF-------ARGNNVKGLWDFLKEM-SRRGNGELVTT 169
H+ E+ + F + V C F + + L++ KEM SRR + +T
Sbjct: 802 HYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITY 861
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+ V I L + +++AL FY + RP Y +I+ L +VG +A L E+
Sbjct: 862 NIV---ISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEE 918
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M + C P+ + ILI+ Y K G
Sbjct: 919 M--SDYGCKPNCAIFNILINGYGKIG 942
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 150 GLWDFLKEM--SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G D KE +G + T T L+ VL + +EA ATF M++ P+++ Y
Sbjct: 346 GDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTY 405
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N +I L R G A LL+ ME G + P YTY I + K G
Sbjct: 406 NTLICGLLRAGRIEDALKLLDTMESVGVQ--PTAYTYITFIDYFGKSG 451
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I LG+ + EALA + M+ PD+Y YN ++ L G +A+ + E+++L G
Sbjct: 1004 IINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAG 1063
Query: 235 FRCPPDVYTYTILISSY 251
PDV+TY LI Y
Sbjct: 1064 LE--PDVFTYNALIRGY 1078
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T ++ CLI L E +A F MK C PD + +N+++ + G + L
Sbjct: 787 TLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELY 846
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++M RC PD TY I+ISS K
Sbjct: 847 KEM--ISRRCKPDAITYNIVISSLAK 870
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L+ LG+EG V +A+ F M +C P+ ++N +++ C+ A +
Sbjct: 576 TVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMF 635
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
+M + C PDV TY +I K
Sbjct: 636 SKMTV--MDCKPDVLTYNTVIYGLIK 659
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ T L+ L G V+EAL F +K PD AYN +IN L + +A L +M
Sbjct: 965 SYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEM 1024
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
G PD+YTY L+ + GM
Sbjct: 1025 RNRGI--VPDLYTYNSLMLNLGLAGM 1048
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G ++ + LI +L + G EAL + RM +P + Y+ ++ AL + +
Sbjct: 184 RKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDS 243
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL++ME G R P+VYT+TI I + G
Sbjct: 244 EMVMVLLKEMEDLGLR--PNVYTFTICIRVLGRAG 276
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T I G+ G +A+ TF +MK P++ A N + +L +G +A+ +
Sbjct: 436 TAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMF 495
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G PD TY +++ Y K G
Sbjct: 496 NGLRENGL--APDSVTYNMMMKCYSKVG 521
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L E G + EA F +++ PD YN+++ +VG ++A LL +M G C
Sbjct: 482 LAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNG--CE 539
Query: 239 PDVYTYTILISSYCKYG 255
PDV LI S K G
Sbjct: 540 PDVIVVNSLIDSLYKAG 556
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G+ G A F RM RPD+ +Y ++++ LC G ++A + +++ G
Sbjct: 934 LINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTG 993
Query: 235 FRCPPDVYTYTILISSYCK 253
PD Y +I+ K
Sbjct: 994 L--DPDFIAYNRIINGLGK 1010
>gi|147792816|emb|CAN68810.1| hypothetical protein VITISV_001082 [Vitis vinifera]
Length = 577
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +IK G + +A F MK C P+V Y V+++ +CR G+ +A LL +M
Sbjct: 197 TYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEM 256
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E C P+V TYT +I S C+ G
Sbjct: 257 EKESGDCSPNVVTYTSMIQSCCEKG 281
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 4/138 (2%)
Query: 118 FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK 177
F+ W ++ H+ + +F N + + D ++ + R G +V+ T ++
Sbjct: 76 FFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIE--AYRVEGTVVSVKTFNVVLH 133
Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
+L E L +EAL +M +F R D AYN VI C G+ + A L+++M L
Sbjct: 134 LLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAAGLMKEMGLIDLY- 192
Query: 238 PPDVYTYTILISSYCKYG 255
P++ TY +I +C G
Sbjct: 193 -PNMITYVTMIKGFCNVG 209
>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
Length = 760
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
++VT + + RG + L L E + +G + T + +I + GL +EA+A
Sbjct: 259 DDVTYNTLIATYCRGGQMH-LGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIA 317
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F M+ PD YN +++ R+GNF++A + ME GF D+ TY L+ S
Sbjct: 318 LFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGF--AKDIVTYNALLDS 375
Query: 251 YCKYG 255
Y K G
Sbjct: 376 YGKQG 380
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+EM +RG + T + LI + G +A+A F +K+ +PDV Y+ +++
Sbjct: 388 LLEEMKQRGASPNILT--YSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDG 445
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C+ G+ ++A LLE+M G R P+V TY L+ +Y +
Sbjct: 446 CCKNGSPDEALALLEEMADNGIR--PNVITYNSLLDAYGR 483
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ G++G EA++ MKQ P++ Y+ +I+A C+ G A L + +
Sbjct: 368 TYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDV 427
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G + PDV Y+ L+ CK G
Sbjct: 428 KKAGLQ--PDVVLYSTLVDGCCKNG 450
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
GN V +S LI G G + +A+ F MK C+P++ YN VI+A + G++
Sbjct: 153 GNNVFVYSS----LICAYGRSGKLAKAVEIFEAMKVV-CKPNLVVYNAVIDACSKGGDYP 207
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISS 250
A + +M G PD T+ LIS+
Sbjct: 208 TALRIFREMLEQGM--SPDRITFNTLISA 234
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI G E F M++ D YN +I CR G + L+E M
Sbjct: 227 TFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETM 286
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
P V TY+ +I Y K G+
Sbjct: 287 A-KSSGIEPSVITYSTMIDGYAKLGL 311
>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
Length = 722
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 183 GLVNEALATFYR-MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
G ++EA A + M C PD++ YN +I LC+ G AR L+ +M++ G C P+V
Sbjct: 367 GRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKG--CEPNV 424
Query: 242 YTYTILISSYCKYG 255
TYTILI +CK G
Sbjct: 425 ITYTILIDRFCKEG 438
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCRP 202
GN KGL F MS+ N + ++C LI L G + AL M P
Sbjct: 578 GNIEKGLALFEDMMSKGLN-----PNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTP 632
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
D+ YN +IN LC+ G +A L +++++ G C PD TY LIS +CK GM
Sbjct: 633 DIVTYNSLINGLCKTGRAQEALNLFDKLQVEGI-C-PDAITYNTLISWHCKEGM 684
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N ++C + R N++ +FL++M RG ++VT ++ LI L + G EAL
Sbjct: 598 NNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNS---LINGLCKTGRAQEAL 654
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
F +++ PD YN +I+ C+ G F+ A LL + GF P+ T+ IL+S
Sbjct: 655 NLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGF--IPNEVTWYILVS 712
Query: 250 SYCKYGMQ 257
++ K G Q
Sbjct: 713 NFIKEGDQ 720
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + ++ + L EMS G G + CLI L ++ V +AL F M C+
Sbjct: 434 FCKEGRLEEARNVLDEMS--GKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCK 491
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD++ +N +I LC+V F +A L + M L G + TY LI ++ + G
Sbjct: 492 PDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGV--IANTITYNTLIHAFLRRG 543
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
N V LK+M+R G V + V LI L + G VNE L M C PDV
Sbjct: 231 NEVDSACALLKDMTRHG---CVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDV 287
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+N I+ LC++ ++A L+++M L GF P+ +TY +L+ C+ G
Sbjct: 288 NTFNDAIHGLCKMLRIHEAAKLVDRMLLRGF--TPNSFTYGVLMHGLCRMG 336
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LIK L G + + LA F M P+ + N++IN LCR GN A L M
Sbjct: 566 TYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDM 625
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PD+ TY LI+ CK G
Sbjct: 626 IHRGL--TPDIVTYNSLINGLCKTG 648
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T LI G + EAL M C D YN +I ALCR GN K
Sbjct: 524 GVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKG 583
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L E M G P+ + ILI+ C+ G
Sbjct: 584 LALFEDMMSKGLN--PNNISCNILINGLCRTG 613
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L ++G + A M+ C P+V Y ++I+ C+ G +AR +L++M
Sbjct: 391 TYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEM 450
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G + Y LIS+ CK
Sbjct: 451 SGKGLAL--NAVGYNCLISALCK 471
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V GN K + + EM +G V T V ++K L V+ A A M + C
Sbjct: 191 VLLAGNCPKVVPNVFYEMLSKGISPTVYTFGV--VMKALCLVNEVDSACALLKDMTRHGC 248
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+ Y +I+AL +VG N+ LLE+M L G C PDV T+ I CK
Sbjct: 249 VPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMG--CIPDVNTFNDAIHGLCK 299
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V +N +IN G ++A+ ++ + L C PD++TY LI CK G
Sbjct: 351 PNVVLFNTLINGYVSRGRLDEAKAVMHESMLS-VGCGPDIFTYNTLILGLCKKG 403
>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
Length = 820
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
GNG T LI L + G V+EA + F ++ RP+ +N VIN LC+ G F+
Sbjct: 398 GNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFD 457
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A LE M G+ PD YTY+ I + CK
Sbjct: 458 VACTFLENMISAGY--APDTYTYSPFIENLCK 487
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
++ R + L EM G V T T+ ++ EG ++ A+ F M+ C
Sbjct: 274 LWCREQKAEEAEKILNEMFDSGLMPCVVTCTI--VVNAYCREGRMSGAVRVFESMRFKGC 331
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V+ YN ++ C G KA LL+QM G PDV TY +LI C G
Sbjct: 332 EPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVE--PDVVTYNLLIRGQCIDG 384
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
VTC + + R + G + M +G V T +++ G V +A+A
Sbjct: 301 VTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNA--IVQGFCNAGKVYKAMALL 358
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+M++ PDV YN++I C G+ A LL ME G D YTY +LI + C
Sbjct: 359 DQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGL--AADQYTYNVLIDALC 416
Query: 253 KYG 255
K G
Sbjct: 417 KTG 419
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 18/194 (9%)
Query: 64 RSIGRQTGFRHRTPLKQRILKK--EADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHW 121
R++ R+ RH +++ D N L+LG Y Q++ + + +
Sbjct: 137 RALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILG---YCRTQQLEVAHDLFCKM--- 190
Query: 122 VERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE 181
F F + V+ + F + + +EM++ T L+K L +
Sbjct: 191 --PFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQPD------MYTHAALVKGLCD 242
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
G E L +MK+ RP AY +++ CR +A +L +M G P V
Sbjct: 243 AGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLM--PCV 300
Query: 242 YTYTILISSYCKYG 255
T TI++++YC+ G
Sbjct: 301 VTCTIVVNAYCREG 314
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI+ +G + A M+ D Y YNV+I+ALC+ G ++A L + +
Sbjct: 372 TYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGL 431
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G R P+ T+ +I+ CK G
Sbjct: 432 EYRGIR--PNSVTFNTVINGLCKAG 454
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
RG + +KE+ R TT L+ + E EA M P
Sbjct: 244 GRGEEGLCMLQKMKELGWRP-----TTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMP 298
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V +V+NA CR G + A + E M G C P+V+TY ++ +C G
Sbjct: 299 CVVTCTIVVNAYCREGRMSGAVRVFESMRFKG--CEPNVWTYNAIVQGFCNAG 349
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL+ M G T T + I+ L + E L M Q +P Y +VIN
Sbjct: 462 FLENMISAGYAP--DTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINR 519
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L N+ A + QM G C PDV TYT + +YC G
Sbjct: 520 LFNERNYGLATRIWGQMVSQG--CSPDVVTYTTSVRAYCNEG 559
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T +T LI+ L + A M + RPD + +N +I CR A L
Sbjct: 128 TGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLF 187
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M GF D +Y LI +C+ G
Sbjct: 188 CKMPFRGFS--QDAVSYAALIEGFCEAG 213
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P YN +I ALCR + A+ L M G+R PD +T+ LI YC+
Sbjct: 127 PTGATYNALIRALCRRADLRHAQRYLSLMVRSGWR--PDAFTFNSLILGYCR 176
>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
gi|224033903|gb|ACN36027.1| unknown [Zea mays]
Length = 655
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
RG + L+++ RG + ++ + ++G V+EAL + F C PD
Sbjct: 169 RGGGFRSAVRVLEDLHARGCA--LDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPD 226
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
V +YN V+ LC + + L+E+M CPP++ T+ LIS C+ G+
Sbjct: 227 VVSYNAVLKGLCMAKRWGCVQELMEEMVR--MACPPNIVTFNTLISYLCRNGL 277
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V + + L++M RG V T T +I +EGL++EA+ M C+
Sbjct: 377 FCQNGLVDRVIELLEQMLERGCMPDVITYTT--VINGFCKEGLIDEAVMLLKSMTACGCK 434
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P+ +Y +V+ LC + A L+ QM G CP + T+ LI+ CK G+
Sbjct: 435 PNTISYTIVLKGLCSAERWVDAEDLMSQMIQQG--CPLNPITFNTLINFLCKKGL 487
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ + GLV+ + +M + C PDV Y VIN C+ G ++A LL+ M G
Sbjct: 373 LVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACG 432
Query: 235 FRCPPDVYTYTILISSYCK 253
C P+ +YTI++ C
Sbjct: 433 --CKPNTISYTIVLKGLCS 449
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G V E + RM C P++ +N +I+ LCR G F + +L QM G C PD+
Sbjct: 244 GCVQELMEEMVRMA---CPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHG--CTPDIR 298
Query: 243 TYTILISSYCKYG 255
Y +I CK G
Sbjct: 299 MYATIIDGICKEG 311
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+ L EG +N+ + F ++ R D YN VI++LC+ G +A L M G
Sbjct: 548 IASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSG 607
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+ TYTILI G
Sbjct: 608 --CVPNESTYTILIRGLASEG 626
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++ L G + +ALA M + C P Y+V++ A CR G F A +LE + G
Sbjct: 128 VVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG 187
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C DV +++++ C G
Sbjct: 188 --CALDVGNCNLVLNAICDQG 206
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L GL +M + C PD+ Y +I+ +C+ G+ A +L +M P
Sbjct: 268 LISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRM--PS 325
Query: 235 FRCPPDVYTYTILISSYCK 253
+ P+V Y L+ C
Sbjct: 326 YGLKPNVVCYNTLLKGLCS 344
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
C D +N++++ C+ G ++ LLEQM G C PDV TYT +I+ +CK G+
Sbjct: 363 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERG--CMPDVITYTTVINGFCKEGL 417
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ LK+M G + +L++ STV I LG+ G +EAL M P+ Y+ +
Sbjct: 493 ELLKQMLVNGCSPDLISYSTV---IDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIA 549
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+AL R G NK + + ++ R D Y +ISS CK G
Sbjct: 550 SALSREGRINKVIQMFDNIQDTTIR--SDAVLYNAVISSLCKRG 591
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D + +M ++G + T LI L ++GLV +A+ +M C PD+ +Y+ VI+
Sbjct: 458 DLMSQMIQQGCP--LNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVID 515
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L + G ++A LL M G P+ Y+ + S+ + G
Sbjct: 516 GLGKAGKTDEALELLNVMVNKGMS--PNTIIYSSIASALSREG 556
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I + +EG + A RM + +P+V YN ++ LC + + LL +M
Sbjct: 303 IIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMF--D 360
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
CP D T+ IL+ +C+ G+
Sbjct: 361 KDCPLDDVTFNILVDFFCQNGL 382
>gi|224576659|gb|ACN57003.1| At1g03560-like protein [Capsella grandiflora]
gi|224576663|gb|ACN57005.1| At1g03560-like protein [Capsella grandiflora]
Length = 207
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 84 RFNGXAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 143
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 144 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 172
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +NE A F M + +P+V Y V+I+ + G+ A LL +M GF+ PDV
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK--PDVV 58
Query: 243 TYTILISSYCKYG 255
TY+++++ CK G
Sbjct: 59 TYSVVVNGLCKNG 71
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 39/133 (29%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC-- 215
M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+N LC
Sbjct: 13 MIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKN 70
Query: 216 ---------------------------------RVGNFNKARFLLEQMELPGFRCPPDVY 242
+ G ++A L E+M G C D Y
Sbjct: 71 GRVEEALDYFQTCRFNGXAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKG--CTRDSY 128
Query: 243 TYTILISSYCKYG 255
Y LI + K+G
Sbjct: 129 CYNALIDALTKHG 141
>gi|357112338|ref|XP_003557966.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 538
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186
H F V C F R + L EM RG L T S + ++ L + G V
Sbjct: 159 HSFAIAVQC------FCRKGAPDEAKETLDEMLARGY--LPTVSAFSAVVGCLCKRGRVT 210
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
A+ M+ C P + YN +I LC VG AR LL +++ + D+YT+TI
Sbjct: 211 RAMEVLDAMRGVGCEPTIRTYNSLIGGLCYVGRLEDARDLLNKLK-DSPKQTADIYTFTI 269
Query: 247 LISSYCKYG 255
++ +CK G
Sbjct: 270 VLDGFCKVG 278
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+G + RG + + + L M RG G T T LI L G + +A ++K
Sbjct: 200 VGCLCKRGRVTRAM-EVLDAM--RGVGCEPTIRTYNSLIGGLCYVGRLEDARDLLNKLKD 256
Query: 198 F-RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ D+Y + +V++ C+VG + A + E G P ++TY L++ +CK G
Sbjct: 257 SPKQTADIYTFTIVLDGFCKVGRTDDAMAIFEDAVRTGL--SPTIFTYNALLNGHCKEG 313
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T ++ + G ++A+A F + P ++ YN ++N C+ G+ KA LL +M
Sbjct: 266 TFTIVLDGFCKVGRTDDAMAIFEDAVRTGLSPTIFTYNALLNGHCKEGHLLKAYNLLMEM 325
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
CPPD +++I++ + + G
Sbjct: 326 -CDNETCPPDKISFSIVLPALLRAG 349
>gi|125562258|gb|EAZ07706.1| hypothetical protein OsI_29963 [Oryza sativa Indica Group]
Length = 465
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
LW +M R G ++ ST + +I G+ L ++A+ F R+ +F C YN +
Sbjct: 137 LWSLAADM--RALGLPLSPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNAL 194
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ALC G+F A LL +M G PD T++ L+ ++C G
Sbjct: 195 LDALCANGSFAGAYKLLRRMARKG--VAPDRATFSTLVDAWCAAG 237
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL +M+ RG V + L+ L G + EA A RM + PDV +N + A
Sbjct: 245 FLDDMAERGFHPPVRGRDL--LVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEA 302
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC G+ A LL G C PD+ TY ++I + K G
Sbjct: 303 LCSSGDVEFAVALLADASSRGL-C-PDISTYKVMIPAVAKAG 342
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L + S RG ++T V +I + + G ++EA FY + RP Y +I A
Sbjct: 315 LLADASSRGLCPDISTYKV--MIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAIIKA 372
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G F A M+ G PP+ Y +L+ + G
Sbjct: 373 LCKAGRFADAFAFFGDMKSKGH--PPNRPVYVMLVKMCVRGG 412
>gi|125604075|gb|EAZ43400.1| hypothetical protein OsJ_28005 [Oryza sativa Japonica Group]
Length = 461
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
LW +M R G ++ ST + +I G+ L ++A+ F R+ +F C YN +
Sbjct: 133 LWSLAADM--RALGLPLSPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNAL 190
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ALC G+F A LL +M G PD T++ L+ ++C G
Sbjct: 191 LDALCANGSFAGAYKLLRRMARKG--VAPDRATFSTLVDAWCAAG 233
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL +M+ RG V + L+ L G + EA A RM + PDV +N + A
Sbjct: 241 FLDDMAERGFHPPVRGRDL--LVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEA 298
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC G+ A LL G C PD+ TY ++I + K G
Sbjct: 299 LCSSGDVEFAVALLADASSRGL-C-PDISTYKVMIPAVAKAG 338
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L + S RG ++T V +I + + G ++EA FY + RP Y +I A
Sbjct: 311 LLADASSRGLCPDISTYKV--MIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAIIKA 368
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G F A M+ G PP+ Y +L+ + G
Sbjct: 369 LCKAGRFADAFAFFGDMKSKGH--PPNRPVYVMLVKMCVRGG 408
>gi|108862162|gb|ABA95747.2| Cytochrome P450 family protein [Oryza sativa Japonica Group]
Length = 1595
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
RG+ +GL L EM NG L T T LI LG++G + + + F M++ P+
Sbjct: 1026 RGDMGRGLL-LLGEMET--NGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPN 1082
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V YN VI+ALC + +A +L+QM G C PD+ T+ LI+ C G
Sbjct: 1083 VQIYNSVIDALCNCRSATQAMVILKQMFASG--CDPDIITFNTLITGLCHEG 1132
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFR 199
F R N+ + M +G V V+C +IK + G+++EA+ M++
Sbjct: 1268 FIRSENLGDARKIFEFMEHKG----VCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVG 1323
Query: 200 CRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C PD + Y VI+ + GN N A R+L + ++ +C P+V TY+ LI+ YCK G
Sbjct: 1324 CIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKR---KCKPNVVTYSSLINGYCKTG 1377
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I ++G +N AL M + +C+P+V Y+ +IN C+ G+ + A L M
Sbjct: 1330 TYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANM 1389
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ P+V TYTILI S K
Sbjct: 1390 QAEALS--PNVVTYTILIGSLFK 1410
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D L EM RG+ V T LI L G V+EAL +M + + PDV YNV+I+
Sbjct: 1174 DLLVEMMGRGHTPDVVT--FGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLIS 1231
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC+ A+ +LE+M + PD + Y LI + +
Sbjct: 1232 GLCKKRMLPAAKNILEEMLEKNVQ--PDEFVYATLIDGFIR 1270
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 98/245 (40%), Gaps = 35/245 (14%)
Query: 29 DAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPR---SIGRQTGFRHRTPLKQRILKK 85
DA LAA+ + +P +A L S + QSP ++ T H T L+ +
Sbjct: 835 DAHLAAAVSSLPDP----DLAVALLS----WSQSPDHHVALQDPTPLAHSTLLRLLARSR 886
Query: 86 EADNIANNVLVLGPAAYRNPQKVTLG-----------INKATEFYHWVERFFHFFHNEVT 134
D + + + + A P + LG + KATE V +
Sbjct: 887 RFDAVDDTLQSMSLAGA-APTRACLGALVAAYADAGMLGKATEMCERVREQYGSLPEVTH 945
Query: 135 CKEMGIVFA---RGNNVKGLWDFLKEMSRRGNGELVTTSTVTC-LIKVLGEEGLVNEALA 190
C + + R ++ + L+D EM + +G + TC L++ L E V E L
Sbjct: 946 CNRLLKLLVEQRRWDDARKLYD---EMLGKDSG---ADNYSTCVLVRGLCLERRVEEGLK 999
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
C P V YNV+I+ CR G+ + LL +ME GF P + TY LI+
Sbjct: 1000 LIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETNGFL--PTLVTYGSLINW 1057
Query: 251 YCKYG 255
K G
Sbjct: 1058 LGKKG 1062
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+A+ +M C PD+ +N +I LC G+ KA L E P+ +YT
Sbjct: 1101 QAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLR--EAIRRELNPNQLSYTP 1158
Query: 247 LISSYCKYG 255
LI +C G
Sbjct: 1159 LIHGFCMRG 1167
>gi|115489040|ref|NP_001067007.1| Os12g0557800 [Oryza sativa Japonica Group]
gi|113649514|dbj|BAF30026.1| Os12g0557800 [Oryza sativa Japonica Group]
Length = 682
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 28/161 (17%)
Query: 118 FYHWVERFFHFFHNEVTCKE--MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCL 175
Y W RF F + + +G ++ RG V + E+ RG G V+ V L
Sbjct: 103 LYVWASRFGAHFARDGGVRRALVGALWRRGPVVLS-GRLVAEV--RGCGCEVSEELVCAL 159
Query: 176 IKVLGEEGLVNEALATFYRMKQFR---------------------CRPDVYAYNVVINAL 214
++ G GL A F +M + CRPD + YN +++ +
Sbjct: 160 VESWGRLGLARYAHEVFVQMPRLGLRPSTAVYTAYLRFQQMPADGCRPDHFTYNSLVHGV 219
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CR G ++A L+ QME G R P+V+TYT+L+ +C G
Sbjct: 220 CRRGIVDEAVRLVRQMEGEGIR--PNVFTYTMLVDGFCNAG 258
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L +++A F M ++ RP+ YNV+++ LC G+ NKA LL +M
Sbjct: 491 TFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKM 550
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
++ G PD Y++ LI S+C+
Sbjct: 551 KIDGV--TPDAYSFNALILSFCR 571
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L G VN+A+ +MK PD Y++N +I + CR+ +KA + M
Sbjct: 526 TYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDM 585
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
F PD YTY LI + C
Sbjct: 586 VR--FGVVPDSYTYNSLIKALC 605
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V + +KEM +G L T LI + G V+ A + +
Sbjct: 429 FVKAGAVDKAEEIVKEMQDKGF--LPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFM 486
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ + +I+ LC + A E+M G R P+ TY +L+ + C G
Sbjct: 487 PDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVR--PNAQTYNVLMHTLCSAG 538
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ + G+V+EA+ +M+ RP+V+ Y ++++ C G +A +L++M
Sbjct: 211 TYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKM 270
Query: 231 ELPGFRCPPDVYTYTILI 248
+ G P TY L+
Sbjct: 271 KEKGV--APSEATYRTLV 286
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L + + +I + G V++A M+ P++ +N +I+ ++GN + A
Sbjct: 414 GLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNA 473
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ +L+ + GF PD+ T+T LI C
Sbjct: 474 KVVLKMLMEHGFM--PDIITFTSLIDGLC 500
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V +YN+VI+ + G +KA ++++M+ GF P++ T+ LIS Y K G
Sbjct: 419 VMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFL--PNLVTFNTLISGYSKLG 468
>gi|449469288|ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Cucumis sativus]
Length = 529
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ NV+ + L EM RG VT T + + + VN AL RM + +C
Sbjct: 337 KDQNVEEAYQILDEMIERG----VTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCV 392
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD + YN+V+ L RVG F++A + E M GF P V TY ++I +CK
Sbjct: 393 PDKHTYNMVLKLLVRVGRFDRANEVWESMGKRGFY--PSVSTYAVMIHGFCK 442
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+ T + L + G G N A F M++ C DV AYN ++ ALC+ G ++A +
Sbjct: 219 SVKTYSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMF 278
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
+M+ G PD TY+I I S C+
Sbjct: 279 LEMDSNG--VDPDADTYSIFIRSSCQ 302
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V NN + ++D ++E G L+ L++ L + G +EA F M
Sbjct: 232 VVGDSNNAQKVFDEMRE-----RGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGV 286
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y++ I + C+ + + +LE+ + P+V+TY +I CK
Sbjct: 287 DPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNL--LPNVFTYNCVIKKLCK 337
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T C+IK L ++ V EA M + PD ++YN + C N A L+++M
Sbjct: 327 TYNCVIKKLCKDQNVEEAYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRM 386
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ +C PD +TY +++ + G
Sbjct: 387 DRD--KCVPDKHTYNMVLKLLVRVG 409
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
NG T + I+ +E ++ R K+ P+V+ YN VI LC+ N
Sbjct: 283 SNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVE 342
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A +L++M G PD ++Y + + +C +
Sbjct: 343 EAYQILDEMIERG--VTPDTWSYNAIQAYHCDHS 374
>gi|414868428|tpg|DAA46985.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
Length = 683
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T+ +I G V+ A F +M CRPD + YN +++ +CR G ++A L+
Sbjct: 179 STAIYNAVIAASVRAGAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALRLV 238
Query: 228 EQMELPGFRCPPDVYTYTILISSYC 252
+QME G R P+V TYT+L+ +C
Sbjct: 239 KQMERAGIR--PNVVTYTMLVDGFC 261
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
NV FLK + +G + T T LI L +++A F M ++ RP+V
Sbjct: 474 GNVHDAKAFLKMVME--HGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQ 531
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YNV+I+ LC G+ +KA LL +M++ G PD Y++ I S+C+
Sbjct: 532 TYNVLIHGLCSAGHVSKAIELLNKMKMDGI--TPDAYSFNAPILSFCR 577
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 5/140 (3%)
Query: 118 FYHWVERFF-HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLI 176
Y W RF HF + + +G R V + ++ R G V+ + L+
Sbjct: 95 LYVWASRFGQHFARDRSVRRALGDALLRRGPVVLSAALVADV--RSCGCEVSEELLCALV 152
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
+ G GL + A F ++ + RP YN VI A R G + A +QM P
Sbjct: 153 ESWGRLGLAHYAHEVFVQVPRLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQM--PADG 210
Query: 237 CPPDVYTYTILISSYCKYGM 256
C PD +TY L+ C+ G+
Sbjct: 211 CRPDCFTYNTLVHGVCRRGI 230
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EMS G V T V LI L G V++A+ +MK PD Y++N I + CR
Sbjct: 520 EMSEWGVRPNVQTYNV--LIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCR 577
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ KA+ L M G PD YTY LI + C
Sbjct: 578 MRKIEKAQKLFNDMSRYGV--SPDSYTYNALIKALC 611
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G L + + +I + G V AL T M++ P++ +N +IN ++GN +
Sbjct: 419 DGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHD 478
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYC 252
A+ L+ + G PDV T+T LI C
Sbjct: 479 AKAFLKMVMEHGLM--PDVITFTSLIDGLC 506
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
FA+ V+ + +K M G + LVT +T LI + G V++A A + +
Sbjct: 435 FAKAGEVERALETIKVMQESGFSPNLVTFNT---LINGYLKLGNVHDAKAFLKMVMEHGL 491
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV + +I+ LC + A +M G R P+V TY +LI C G
Sbjct: 492 MPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVR--PNVQTYNVLIHGLCSAG 544
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ + G+V+EAL +M++ RP+V Y ++++ C +A +LE+M
Sbjct: 217 TYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERM 276
Query: 231 ELPGFRCPPDVY 242
+ G Y
Sbjct: 277 KEKGVSATEATY 288
>gi|346703736|emb|CBX24404.1| hypothetical_protein [Oryza glaberrima]
Length = 1765
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
RG+ +GL L EM +G L T T LI LG++G + + + F M++ P+
Sbjct: 1195 RGDMGRGLL-LLGEMETKGF--LPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPN 1251
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V YN VI+ALC+ + +A +L+QM G C PD+ T+ LI+ C G
Sbjct: 1252 VQIYNSVIDALCKCRSATQAMVILKQMFASG--CDPDIITFNTLITGLCHEG 1301
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFR 199
F R N+ + M +G + V+C +IK + G+++EA+ M++
Sbjct: 1437 FIRSENLGDARKIFEFMEHKG----ICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVG 1492
Query: 200 CRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C PD + Y VI+ + GN N A R+L + ++ +C P+V TY+ LI+ YCK G
Sbjct: 1493 CIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKR---KCKPNVVTYSSLINGYCKTG 1546
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I ++G +N AL M + +C+P+V Y+ +IN C+ G+ + A L M
Sbjct: 1499 TYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDFAEGLFANM 1558
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ P+V TYTILI S K
Sbjct: 1559 QAEAL--SPNVVTYTILIGSLFK 1579
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D L EM RG+ V T LI L G V+EAL +M + + PDV YNV+I+
Sbjct: 1343 DLLVEMMGRGHTPDVVT--FGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLIS 1400
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC+ A+ +LE+M + PD + Y LI + +
Sbjct: 1401 GLCKKRMLPAAKNILEEMLEKNVQ--PDEFVYATLIDGFIR 1439
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTC-LIKVLGEEGLVNEALATFYRMKQFRCRP 202
R ++ + L+D EM + +G + TC L++ L E V E L C P
Sbjct: 1127 RWDDARKLYD---EMLGKDSG---ADNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCIP 1180
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V YNV+I+ CR G+ + LL +ME GF P + TY LI+ K G
Sbjct: 1181 HVVFYNVLIDGYCRRGDMGRGLLLLGEMETKGFL--PTLVTYGSLINWLGKKG 1231
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ +++ + EM +RG V +I L + +A+ +M C
Sbjct: 1227 LGKKGDLEKIGSLFLEMRKRGFSPNV--QIYNSVIDALCKCRSATQAMVILKQMFASGCD 1284
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ +N +I LC G+ KA L E P+ +YT LI +C G
Sbjct: 1285 PDIITFNTLITGLCHEGHVRKAEHFLR--EAIRRELNPNQLSYTPLIHGFCMRG 1336
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 7/145 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTS 170
IN A EF++ ++ N VT + F NN++ + EM G + + +
Sbjct: 467 INGAVEFFNEMQGK-GLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYY 525
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + G ++ A +MK+ PD+ ++NV+IN CR ++A +L++M
Sbjct: 526 T---LISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEM 582
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G + PD TY LIS + K G
Sbjct: 583 ENAGIK--PDGVTYNTLISHFSKTG 605
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + + + G +F EM +G G T T LI+ + +A+
Sbjct: 450 NVVTLNTLVDGMCKHGRINGAVEFFNEM--QGKGLKGNAVTYTALIRAFCNVNNIEKAME 507
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F M + C PD Y +I+ L + G ++A F+L +M+ GF PD+ ++ +LI+
Sbjct: 508 LFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGF--SPDIVSFNVLING 565
Query: 251 YCK 253
+C+
Sbjct: 566 FCR 568
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 56/129 (43%), Gaps = 8/129 (6%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
+C + R K + L EM V T + LI L + V+EAL F
Sbjct: 306 ASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGI--LINHLCKFRRVDEALEVF 363
Query: 193 YRMKQ-----FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
+M F PDV YN +I+ LC+VG + L+E+M RC P+ TY L
Sbjct: 364 EKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMR-SQPRCMPNTVTYNCL 422
Query: 248 ISSYCKYGM 256
I YCK M
Sbjct: 423 IDGYCKASM 431
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMK-QFRCRPDVYAYNVV 210
F K NG LV +T LI L + G E L RM+ Q RC P+ YN +
Sbjct: 363 FEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCL 422
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I+ C+ AR L +QM G PP+V T L+ CK+G
Sbjct: 423 IDGYCKASMIEAARELFDQMNKDGV--PPNVVTLNTLVDGMCKHG 465
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 129 FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188
F N + ++ R WD L + + G ++ ++ L+ LG
Sbjct: 267 FPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGG--VMEAASCNALLTALGRAREFKRM 324
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM---ELPGFRCPPDVYTYT 245
MK+ +P+V + ++IN LC+ ++A + E+M E GF PDV TY
Sbjct: 325 NTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYN 384
Query: 246 ILISSYCKYGMQ 257
LI CK G Q
Sbjct: 385 TLIDGLCKVGRQ 396
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F R N + ++ LKEM G + VT +T LI + G + A +M +
Sbjct: 566 FCRKNKLDEAYEMLKEMENAGIKPDGVTYNT---LISHFSKTGDFSTAHRLMKKMVKEGL 622
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P V Y +I+A C GN ++A + M + PP+ Y ILI+S C+
Sbjct: 623 VPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTS-KVPPNTVIYNILINSLCR 674
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA M+ +PD YN +I+ + G+F+ A L+++M G P V TY
Sbjct: 572 LDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGL--VPTVVTY 629
Query: 245 TILISSYCKYG 255
LI +YC G
Sbjct: 630 GALIHAYCLNG 640
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T CLI + ++ A F +M + P+V N +++ +C+ G N A
Sbjct: 416 TVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFN 475
Query: 229 QMELPGFRCPPDVYTYTILISSYC 252
+M+ G + + TYT LI ++C
Sbjct: 476 EMQGKGLK--GNAVTYTALIRAFC 497
>gi|125540181|gb|EAY86576.1| hypothetical protein OsI_07956 [Oryza sativa Indica Group]
gi|125582780|gb|EAZ23711.1| hypothetical protein OsJ_07414 [Oryza sativa Japonica Group]
gi|215768726|dbj|BAH00955.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 500
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 39/173 (22%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F+ W + + H C M + + + +W+ L +M RG LVT TV
Sbjct: 99 ALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQMWELLSDMHGRG---LVTVETVAK 155
Query: 175 LIKVLGEEGLVNEALATFYRMKQFR---------------CR------------------ 201
I+ L + + F +++ C+
Sbjct: 156 SIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLDVLCKERKIEVAREVFAVLSPHI 215
Query: 202 -PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y +N+ ++ C + ++A + +E+M+ GF PP V TYT ++ +YCK
Sbjct: 216 PPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGF--PPSVITYTTVLEAYCK 266
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + N + +++ L M +G V T T+ ++ L + EAL+ +RMK C
Sbjct: 263 AYCKQRNFRRVYEVLDSMGSQGCHPNVITYTM--IMTSLAKCERFEEALSVSHRMKSSGC 320
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD YN +IN L + G+ +A + ++E+P ++ TY +IS +C YG
Sbjct: 321 KPDTLFYNSLINLLGKSGHLFEASQVF-RVEMPMNGVSHNLATYNTMISIFCYYG 374
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+ T MK+ P V Y V+ A C+ NF + +L+ M G C P+V TY
Sbjct: 235 IDEAMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQG--CHPNVITY 292
Query: 245 TILISSYCK 253
T++++S K
Sbjct: 293 TMIMTSLAK 301
>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
Length = 244
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D K M + GN L + L+ L ++G + +A F M+ +PD+ YN++++
Sbjct: 85 DLFKNMHKNGN--LPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKPDLVMYNILVD 142
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
A+C+ GN AR L ++ + G + P+V YT +I+ CK G+
Sbjct: 143 AMCKSGNLKDARELFSELFVKGLQ--PNVQIYTTIINGLCKEGL 184
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + G + EA F M + PD++AY+++++ LC+ G KA L M
Sbjct: 66 TYNTLIHGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAM 125
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ + PD+ Y IL+ + CK G
Sbjct: 126 QSSSLK--PDLVMYNILVDAMCKSG 148
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V EA F M +PDV+ YN++IN C+ +KA+ L +M L G PD TY
Sbjct: 10 VVEARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGL--TPDKVTY 67
Query: 245 TILISSYCKYG 255
LI C+ G
Sbjct: 68 NTLIHGLCQLG 78
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 141 VFARGNNVKGLWDFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+ N+K + E+ +G N ++ TT +I L +EGL++EAL F M++
Sbjct: 143 AMCKSGNLKDARELFSELFVKGLQPNVQIYTT-----IINGLCKEGLLDEALEAFRNMEE 197
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
C PD ++YNV+I + + ++A L+ +M GF
Sbjct: 198 DGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGF 235
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ + + G + +A F + +P+V Y +IN LC+ G ++A ME G
Sbjct: 140 LVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDG 199
Query: 235 FRCPPDVYTYTILISSYCKY 254
CPPD ++Y ++I + ++
Sbjct: 200 --CPPDEFSYNVIIRGFLQH 217
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD YN +I+ LC++G +A+ L + M G PD++ Y+IL+ CK G
Sbjct: 62 PDKVTYNTLIHGLCQLGRLREAQDLFKNMHKNGNL--PDLFAYSILLDGLCKQG 113
>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
Length = 663
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ ARG VK + D EM G + T T +I L + G + A A F M+
Sbjct: 312 LLARGF-VKKVDDLQLEMENEGI--MPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGL 368
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV YN ++N C+ GN +A L + G P V TY ILI YC+ G
Sbjct: 369 LPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLA--PTVLTYNILIDGYCRLG 421
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G L T L+ + G EAL F +++ P V YN++I+ CR+G+
Sbjct: 364 RAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDL 423
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILI 248
+AR L E+M G C PDVYTYTIL+
Sbjct: 424 EEARRLKEEMVEQG--CLPDVYTYTILM 449
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ N+K + + +M NG T TCLI E G + EA F M
Sbjct: 522 LCKTGNLKDAEELMMQMI--SNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLP 579
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P Y V+I+A CR GN A +M G P+ TY +LI + C+ G
Sbjct: 580 PSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVE--PNEITYNVLIHALCRMG 631
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D YN++I+ LC+ GN A L+ QM G + PD TYT LI ++C+ G
Sbjct: 511 DTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQ--PDCITYTCLIHAHCERG 561
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 156 KEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+EM+ G V C +++VL + ++ A M Q P + YN ++++
Sbjct: 185 REMASHG----VAPDVKDCNKVLRVLRDAARWDDMSAVHAEMLQLGIEPSIVTYNTLLDS 240
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G +K LL++ME G C P+ TY ++I+ + G
Sbjct: 241 FSKEGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLARKG 282
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 157 EMSRRGNGELVTTS------TVTCLIKVLGEEGLVNEALAT--FYRMKQFRCRPDVYAYN 208
E +RR E+V T T L+K G + + A+ F M RPD +AYN
Sbjct: 424 EEARRLKEEMVEQGCLPDVYTYTILMK--GSHNVCSLAMTREFFDEMLSKGLRPDCFAYN 481
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I A +G+ +K+ L E + L G D TY ILI CK G
Sbjct: 482 TRICAEITLGDISKSFQLREVIMLEGISS--DTVTYNILIDGLCKTG 526
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L G V + M+ P V YN +I+ L + G A+ +M G
Sbjct: 308 LITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMG 367
Query: 235 FRCPPDVYTYTILISSYCKYGMQ 257
PDV TY L++ YCK G Q
Sbjct: 368 LL--PDVITYNSLLNGYCKAGNQ 388
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQ 229
T T +I G + A F +M + P+ YNV+I+ALCR+G A R E
Sbjct: 584 TYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAYRHFYEM 643
Query: 230 MELPGFRCPPDVYTYTILISS 250
+E G P+ YTYT+LI
Sbjct: 644 LER-GLV--PNKYTYTLLIDG 661
>gi|399107188|gb|AFP20358.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 116 RFNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 175
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
B+A L ++ME C VYTYTILIS
Sbjct: 176 BEAMTLFKRMEEEE-GCDQTVYTYTILISG 204
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 25 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 84
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 85 FK--PDVVTYSVVVNGLCKNG 103
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 39 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 96
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 97 NGLCKNGRVEEALDYFQTCRFNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 154
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 155 CTRDSYCYNALIDALTKHG 173
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+A + M + + + +++VI LC+ G N+ + E M G + P+V YT+LI
Sbjct: 4 VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLI 61
Query: 249 SSYCKYG 255
Y K G
Sbjct: 62 DGYAKSG 68
>gi|341606825|gb|AEK83515.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 206
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 110 RFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 169
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
N+A L ++ME C VYTYTILIS
Sbjct: 170 NEAMTLFKRMEEEE-GCDQTVYTYTILISG 198
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ +I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M
Sbjct: 17 SLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMID 76
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
GF+ PDV TY+++++ CK G
Sbjct: 77 EGFK--PDVVTYSVVVNGLCKNG 97
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 33 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 90
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 91 NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 148
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 149 CTRDSYCYNALIDALTKHG 167
>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Vitis vinifera]
Length = 622
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 26/188 (13%)
Query: 68 RQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFH 127
+++G R+ L +R+L + D G YR F+ W +
Sbjct: 80 QESGVAVRSGLTERVLNRCGDA--------GNLGYR--------------FFVWASKQPG 117
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187
+ H+ K M + + +W ++EM RR N + V+ L++ +V +
Sbjct: 118 YRHSYEVYKAMIKILGKMRQFGAVWALIEEM-RRENPQFVSPYVFVVLMRRFASARMVKK 176
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ M ++ C PD + + +++ALC+ G+ +A L E M + R P + +T L
Sbjct: 177 AIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRI---RFTPTLKHFTSL 233
Query: 248 ISSYCKYG 255
+ +C+ G
Sbjct: 234 LYGWCREG 241
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + +A M++ C P+V ++ +I ALC +A + +M+ G CP D
Sbjct: 276 GKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCG--CPADAV 333
Query: 243 TYTILISSYCKYG 255
TYT LIS +CK+G
Sbjct: 334 TYTTLISGFCKWG 346
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 55/147 (37%), Gaps = 35/147 (23%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+A + +D LKEM R+ V + T LI+ L + + EA+ F+ M+ C
Sbjct: 272 YAAAGKMVDAYDLLKEMRRKECEPNVMS--FTTLIQALCAKKKMEEAMRVFFEMQSCGCP 329
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQM------------------------------- 230
D Y +I+ C+ G +K LL+ M
Sbjct: 330 ADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIEL 389
Query: 231 --ELPGFRCPPDVYTYTILISSYCKYG 255
E+ C PD+ Y I+I CK G
Sbjct: 390 MEEMRKIGCTPDLNIYNIVIRLACKLG 416
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+ E + M++ C PD+ YN+VI C++G + + +ME G P + T+
Sbjct: 383 LEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGL--SPGLDTF 440
Query: 245 TILISSY 251
I+I +
Sbjct: 441 VIMIHGF 447
>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 492
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 38/229 (16%)
Query: 45 IESVADVLKSIPRFFFQSPRS---IGRQTGFRHRTPLKQRILKK------EADNIANNVL 95
+E+ D+L+++ F S + + RTP+ R+LK+ E + N +
Sbjct: 187 VETAHDLLRTLKSRFRPDTVSYNILANGYCLKKRTPMALRVLKEMVQRGIEPTMVTYNTM 246
Query: 96 VLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIV--------FARGNN 147
+ G +R+ Q I +A EFY +++ C E+ +V F
Sbjct: 247 LKG--YFRSNQ-----IKEAWEFYLEMKK--------RKC-EIDVVSYTTVIHGFGEAGE 290
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYA 206
VK EM + G V +T LI+V ++ V A+A F M ++ C P+V
Sbjct: 291 VKKAKRVFDEMVKEGVAPNV--ATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVT 348
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+NVVI LC VG+ +A +E+M G R V TY ++I +C G
Sbjct: 349 FNVVIRGLCHVGDMERALGFMERMGEHGLRA--SVQTYNVVIRYFCDAG 395
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQF 198
VF + ++V+ +EM R G + + + VT +I+ L G + AL RM +
Sbjct: 319 VFCKKDSVQNAVAVFEEMVREG---VCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEH 375
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
R V YNVVI C G K + +M G C P++ TY +LIS+
Sbjct: 376 GLRASVQTYNVVIRYFCDAGEIEKGLEVFGKMG-DGL-CLPNLDTYNVLISA 425
>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Glycine max]
Length = 725
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
KGL F +EM G G T + LI L G VN+AL M PD+ YN
Sbjct: 570 KGLGLF-EEM--LGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYN 626
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+IN LC++G+ +A L +++ G R PD TY LIS +C GM
Sbjct: 627 SLINGLCKMGHVQEASNLFNKLQSEGIR--PDAITYNTLISRHCHEGM 672
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
+ V L++M++ G V S + LI L E V+EAL M C PDV
Sbjct: 219 SEVDSACSLLRDMAKHG---CVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDV 275
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+N VI+ LCR G ++A LL++M L GF D TY L+ C+ G
Sbjct: 276 QTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFS--TDALTYGYLMHGLCRMG 324
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 7/145 (4%)
Query: 112 INKATEFYHWVERFFH-FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS 170
+ +A YH + F N VT + F ++++ + + EM RG +
Sbjct: 498 MEEALSLYH--DMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCP--LDNI 553
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LIK L + G V + L F M P + + N++I+ LCR G N A L+ M
Sbjct: 554 TYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDM 613
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PD+ TY LI+ CK G
Sbjct: 614 IHRGLT--PDIVTYNSLINGLCKMG 636
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 58/147 (39%), Gaps = 35/147 (23%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + ++ + + MS +G + T CLI L ++G + EAL F M C+
Sbjct: 422 FCKQGRLEEAAEIVNSMSAKGLS--LNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCK 479
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPG--------------------------- 234
PD+Y +N +IN LC+ +A L M L G
Sbjct: 480 PDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKL 539
Query: 235 -----FR-CPPDVYTYTILISSYCKYG 255
FR CP D TY LI + CK G
Sbjct: 540 VDEMLFRGCPLDNITYNGLIKALCKTG 566
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVN 186
F ++C + R V FL++M RG ++VT ++ LI L + G V
Sbjct: 583 IFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNS---LINGLCKMGHVQ 639
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
EA F +++ RPD YN +I+ C G FN A LL + GF P+ T++I
Sbjct: 640 EASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGF--IPNEVTWSI 697
Query: 247 LIS 249
LI+
Sbjct: 698 LIN 700
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI ++G + EA M + YN +I ALC+ GN +A L +M
Sbjct: 414 TYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEM 473
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C PD+YT+ LI+ CK
Sbjct: 474 SGKG--CKPDIYTFNSLINGLCK 494
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y +N++I+ L + G A LL +M F P+V TYTILI+ +CK G
Sbjct: 374 EPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFE--PNVITYTILINGFCKQG 426
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
+M RG V T V ++K L V+ A + M + C P+ Y +I+ALC
Sbjct: 195 DMLSRGVSPTVYTFGV--VMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCE 252
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++A LLE M L C PDV T+ +I C+ G
Sbjct: 253 NNRVSEALQLLEDMFL--MCCEPDVQTFNDVIHGLCRAG 289
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
FY M P VY + VV+ ALC V + A LL M G C P+ Y LI +
Sbjct: 192 VFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHG--CVPNSVIYQTLIHA 249
Query: 251 YCK 253
C+
Sbjct: 250 LCE 252
>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 737
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187
F ++VT + + ++ + +FL+E RG V + ++ +G ++
Sbjct: 308 LFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQ--VDKVGYSAIVNSFCMQGRMDR 365
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A M C PDV Y V+N LC+VG +A+ +L+QM G C P+ +YT L
Sbjct: 366 AKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHG--CKPNTVSYTAL 423
Query: 248 ISSYCKYG 255
++ C++G
Sbjct: 424 LNGLCQHG 431
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ + EM +G V T T ++ L + G V EA +M + C+P+ +Y ++N
Sbjct: 368 EIVNEMITKGCSPDVVTYTA--VVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLN 425
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ GN +AR ++ E + P+ TY++++ + G
Sbjct: 426 GLCQHGNSLEAREMMNTSEEDWW--TPNAITYSVVMHGLRREG 466
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 4/138 (2%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A +F++W R + + H+ + M V ++ +G L+ M RRG
Sbjct: 119 ALDFFYWAGRQWRYRHDPIVYYMMLQVLSKTKLCQGARRVLRLMVRRGIAR--RPEAFAH 176
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ G + A+ M++ P++ N I+ L KA LE+M+L G
Sbjct: 177 VMVSYSRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVG 236
Query: 235 FRCPPDVYTYTILISSYC 252
P+V TY LI YC
Sbjct: 237 I--TPNVVTYNCLIKGYC 252
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEA 188
N + C V N ++ FL+ M G +T + VT CLIK + V A
Sbjct: 205 NLLICNTAIHVLVMANKLEKALRFLERMQLVG----ITPNVVTYNCLIKGYCDLYQVEHA 260
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+ M C PD +Y V+ LC+ + R L+E+M + + PD TY L+
Sbjct: 261 MELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLMEKM-VKDNKLFPDQVTYNTLV 319
Query: 249 SSYCKYG 255
K+G
Sbjct: 320 HMLSKHG 326
Score = 37.0 bits (84), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 10/116 (8%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR-- 199
F + +N+ L +M N + T T +I LG++G + E AT Y MK +
Sbjct: 532 FCQSDNIDTALSLLDDMYL--NNKHPDAVTFTAIIDALGKKGRIEE--ATVYTMKMLKKG 587
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P Y VI+ C++G + LL +M L +C Y +I C +G
Sbjct: 588 LDPTPVTYRAVIHQYCKMGRVEELIKLLGKM-LSRSKCRT---AYNQVIEKLCNFG 639
>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Brachypodium distachyon]
Length = 877
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
RG+ +G+ L EM +G L T T L+ LG +G + + + M++ R P+
Sbjct: 307 RGDVGRGIL-LLGEMEAKG--LLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPN 363
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V YN VI+ALC+ + ++A +L+QM G C PD T++ LIS C+ G
Sbjct: 364 VQIYNSVIDALCKCRSASQALVVLKQMFAGG--CDPDAITFSTLISGLCQEG 413
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G + T T LI ++G ++ AL+ M + RC+P+V AY+ +IN C++G+
Sbjct: 601 RKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDT 660
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ A L ME G P+V TYTILI S K
Sbjct: 661 DAAECLFGSMESQGLF--PNVITYTILIGSLFK 691
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L EM RG+ V T LI L G V+EAL +M + PD YNV+I+
Sbjct: 455 NLLVEMMERGHTPDVVT--FGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLIS 512
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC+ AR L+E+M PD Y YT LI + +
Sbjct: 513 GLCKKKMLPAARNLIEEMLEQNVH--PDKYVYTTLIDGFIR 551
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK + G++NEA+ M++ PD + Y +I + GN + A LL M
Sbjct: 580 MIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMM--K 637
Query: 235 FRCPPDVYTYTILISSYCKYG 255
RC P+V Y+ LI+ YCK G
Sbjct: 638 RRCQPNVVAYSSLINGYCKLG 658
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA F M+Q PDV YN +I C+ G N+A + M G PD +TY
Sbjct: 555 LDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGR--IPDEFTY 612
Query: 245 TILISSYCKYG 255
T LI Y K G
Sbjct: 613 TTLIGGYAKQG 623
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L ++ ++ A M + PD Y Y +I+ R + ++AR + E ME G
Sbjct: 510 LISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKG 569
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
PDV Y +I YC++GM
Sbjct: 570 IH--PDVVGYNAMIKGYCQFGM 589
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 173 TC-LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
TC +++ L EGLV + L C P+ YNV+I+ CR G+ + LL +ME
Sbjct: 262 TCVMVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRGILLLGEME 321
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
G P V TY L+S + G
Sbjct: 322 AKGLL--PTVVTYGTLMSWLGRKG 343
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++AL +M C PD ++ +I+ LC+ G +A LL E + P++ +Y
Sbjct: 380 ASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLR--ETTRWELNPNLSSY 437
Query: 245 TILISSYCKYG 255
T LI +C G
Sbjct: 438 TSLIHGFCVRG 448
>gi|341605731|gb|AEK82968.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605733|gb|AEK82969.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605735|gb|AEK82970.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RXNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 82
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 83 FK--PDVVTYSVVVNGLCKNG 101
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRXNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 18 HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLIDGYAKSG 66
>gi|224576661|gb|ACN57004.1| At1g03560-like protein [Capsella grandiflora]
Length = 207
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 84 RFNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 143
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 144 DEAMXLFKRMEEEE-GCDQTVYTYTILISG 172
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +NE A F M + +P+V Y V+I+ + G+ A LL +M GF+ PDV
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK--PDVV 58
Query: 243 TYTILISSYCKYG 255
TY+++++ CK G
Sbjct: 59 TYSVVVNGLCKNG 71
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 39/133 (29%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC-- 215
M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+N LC
Sbjct: 13 MIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKN 70
Query: 216 ---------------------------------RVGNFNKARFLLEQMELPGFRCPPDVY 242
+ G ++A L E+M G C D Y
Sbjct: 71 GRVEEALDYFQTCRFNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG--CTRDSY 128
Query: 243 TYTILISSYCKYG 255
Y LI + K+G
Sbjct: 129 CYNALIDALTKHG 141
>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
Length = 624
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 16/130 (12%)
Query: 136 KEMGIV------------FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG 183
KEMG V +++ + + FL EM + N L T T T ++ L + G
Sbjct: 37 KEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVK--NHCLPTVVTYTNIVDGLCKAG 94
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
+A+ M+ C P++Y YNV++ LC ++A+ +LE+M + G+ PDV T
Sbjct: 95 RTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYF--PDVVT 152
Query: 244 YTILISSYCK 253
Y I CK
Sbjct: 153 YNSFIKGLCK 162
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 154 FLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L+EM+ RG ++VT ++ IK L + V+EA RM PDV +Y VIN
Sbjct: 137 MLEEMAVRGYFPDVVTYNS---FIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVIN 190
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G+ + A +L+QM G C PDV TY+ LI +CK G
Sbjct: 191 GLCKSGDLDSASRMLDQMTNRG--CTPDVVTYSSLIDGFCKGG 231
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L +M+ RG ++VT S+ LI + G V A+ M + CRP++ AYN ++
Sbjct: 204 MLDQMTNRGCTPDVVTYSS---LIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLG 260
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
AL R+G+ KA +L +ME GF PDV +Y I CK
Sbjct: 261 ALHRLGHIGKAEDMLVEMERRGF--TPDVVSYNACIDGLCK 299
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ K L EM +G + T V +++ L EE ++EA M
Sbjct: 90 LCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV--IVEGLCEERKLDEAKKMLEEMAVRGYF 147
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV YN I LC+ ++AR L +M + PDV +YT +I+ CK G
Sbjct: 148 PDVVTYNSFIKGLCKCDRVDEARKFLARMPV-----TPDVVSYTTVINGLCKSG 196
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 142 FARGNNVK---GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
F +G V+ GL D + ++ R N +V +++ + LG G + L R + F
Sbjct: 227 FCKGGEVERAMGLLDSMLKLGCRPN--MVAYNSLLGALHRLGHIGKAEDMLVEMER-RGF 283
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDV +YN I+ LC+ KA+ + ++M G C P+ +Y++L+ CK
Sbjct: 284 T--PDVVSYNACIDGLCKAERVKKAKAVFDRMVERG--CTPNASSYSMLVEELCK 334
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C+PD + + +++ LCR KAR LL +M+ G C PD Y LIS Y K
Sbjct: 6 CQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMG--CVPDDAIYNALISGYSK 57
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D L EM RRG V + I L + V +A A F RM + C P+ +Y++++
Sbjct: 273 DMLVEMERRGFTPDVVSYNAC--IDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVE 330
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ + A L+EQ ++ D+ YT+L+ CK G
Sbjct: 331 ELCKKKELDDAITLVEQAR-EKYQ-IVDILLYTVLLDGLCKGG 371
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
S+ + L++ L ++ +++A+ + ++ D+ Y V+++ LC+ G F++A L
Sbjct: 322 ASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFS 381
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
++ L C PDV+ Y +++ S+CK
Sbjct: 382 KV-LDEKICEPDVFFYNVMLDSHCK 405
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQ 229
T L++ L + +A RMK+ C PD YN +I+ + +F +A +FL E
Sbjct: 12 TFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEM 71
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
++ C P V TYT ++ CK G
Sbjct: 72 VK---NHCLPTVVTYTNIVDGLCKAG 94
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L + G ++ A +M C PDV Y+ +I+ C+ G +A LL+ M
Sbjct: 186 TTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLK 245
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C P++ Y L+ + + G
Sbjct: 246 LG--CRPNMVAYNSLLGALHRLG 266
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYR-MKQFRCRPDVYAYNVVINALCRVGNFNKA 223
++V T L+ L + G +EA A F + + + C PDV+ YNV++++ C+ +KA
Sbjct: 353 QIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKA 412
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ +QM L C +V T+ IL+ C
Sbjct: 413 LQIHKQM-LERNCC--NVVTWNILVHGLC 438
>gi|449484422|ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Cucumis sativus]
Length = 529
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ NV+ + L EM RG VT T + + + VN AL RM + +C
Sbjct: 337 KDQNVEEAYQILDEMIERG----VTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCV 392
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD + YN+V+ L RVG F++A + E M GF P V TY ++I +CK
Sbjct: 393 PDKHTYNMVLKLLVRVGRFDRANEVWESMGKRGFY--PSVSTYAVMIHGFCK 442
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+ T + L + G G N A F M++ C DV AYN ++ ALC+ G ++A +
Sbjct: 219 SVKTYSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMF 278
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
+M+ G PD TY+I I S C+
Sbjct: 279 LEMDSNG--VDPDADTYSIFIRSSCQ 302
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V NN + ++D ++E G L+ L++ L + G +EA F M
Sbjct: 232 VVGDSNNAQKVFDEMRE-----RGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGV 286
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y++ I + C+ + + +LE+ + P+V+TY +I CK
Sbjct: 287 DPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNL--LPNVFTYNCVIKKLCK 337
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T C+IK L ++ V EA M + PD ++YN + C N A L+++M
Sbjct: 327 TYNCVIKKLCKDQNVEEAYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRM 386
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ +C PD +TY +++ + G
Sbjct: 387 DRD--KCVPDKHTYNMVLKLLVRVG 409
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
NG T + I+ +E ++ R K+ P+V+ YN VI LC+ N
Sbjct: 283 SNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVE 342
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A +L++M G PD ++Y + + +C +
Sbjct: 343 EAYQILDEMIERG--VTPDTWSYNAIQAYHCDHS 374
>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 7/111 (6%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
+ + V L+D +M RG V T V +I L + G NEAL +M++ C P
Sbjct: 146 GKMDQVMMLYD---DMLVRGLQPNVYTYNV--IINSLSKSGKANEALGFLKQMEKVGCVP 200
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+V Y+ +I+ C G ++AR + + M G C P+VYTYT L++ YCK
Sbjct: 201 NVVNYSTLIDGYCLRGQMDEARSVFDLMVSKG--CTPNVYTYTSLMNGYCK 249
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ L EG +++ + + M +P+VY YNV+IN+L + G N+A L+QM
Sbjct: 134 TFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQM 193
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G C P+V Y+ LI YC G
Sbjct: 194 EKVG--CVPNVVNYSTLIDGYCLRG 216
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
+G T L+ L + G + EA A F M++ +P++ Y ++I++LC+ G
Sbjct: 300 AHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIK 359
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ L ++ G + P+VYTYT L+ + CK G+
Sbjct: 360 DGKELFSRLIDEGLK--PNVYTYTALVGALCKEGL 392
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
FLK+M + G +V ST LI G ++EA + F M C P+VY Y ++N
Sbjct: 189 FLKQMEKVGCVPNVVNYST---LIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMN 245
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C++ +A LL++ G PD+ T+T +IS C+ G
Sbjct: 246 GYCKIERIEEAVQLLDETLRKGL--VPDIVTFTTIISGLCRAG 286
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ L +EGL+ EA F +M++ C PD AYNV+I + + + AR L+E+M
Sbjct: 379 TYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEM 438
Query: 231 ELPGF 235
GF
Sbjct: 439 VNRGF 443
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ N++ + +EM R + T+ LI L + G + + F R+ +
Sbjct: 317 LCKHGNLEEAFALFQEMQRSTVKPNLVIYTI--LIDSLCKCGKIKDGKELFSRLIDEGLK 374
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
P+VY Y ++ ALC+ G +A L +ME G C PD Y ++I + ++
Sbjct: 375 PNVYTYTALVGALCKEGLIIEAHKLFRKMEEDG--CTPDKCAYNVIIQGFLQH 425
>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
Length = 684
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
EG + A + M C PDV+ YN++++ LC++G A +L++ME G C P++
Sbjct: 329 EGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKG--CAPNI 386
Query: 242 YTYTILISSYCKYGM 256
TY+ L+ S+C+ GM
Sbjct: 387 VTYSTLLHSFCRNGM 401
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G V +AL M PD+ YN +IN LC+VG + A LLE+ LP
Sbjct: 567 LINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEK--LPN 624
Query: 235 FRCPPDVYTYTILISSYCK 253
PD+ TY ILIS +CK
Sbjct: 625 ENVHPDIVTYNILISWHCK 643
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T LI L G E L M C DV +YN +I ALC+ GN +++
Sbjct: 486 GVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRS 545
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LLE+M G + P+ ++Y +LI+ CK G
Sbjct: 546 MMLLEEMMTKGIK--PNNFSYNMLINELCKAG 575
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LIK L +EG V+ ++ M +P+ ++YN++IN LC+ G A L ++M G
Sbjct: 532 LIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQG 591
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD+ TY LI+ CK G
Sbjct: 592 LT--PDIVTYNTLINGLCKVG 610
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 39/143 (27%)
Query: 150 GLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
G+WD L +MS +G + + +I LG++G ++EA+ MK C+PD+
Sbjct: 400 GMWDDARAMLDQMSAKGFS--MNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDIC 457
Query: 206 AYNVVINALCRVGNFNKARF----LLEQMELP--------------------GFR----- 236
YN +I LC ++A LLE+ + G R
Sbjct: 458 TYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEM 517
Query: 237 ----CPPDVYTYTILISSYCKYG 255
CP DV +Y LI + CK G
Sbjct: 518 VLHGCPLDVVSYNGLIKALCKEG 540
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 154 FLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L+ M+R G + V TV I L +G V EA M C DV +N V+
Sbjct: 202 LLRGMARHGCVPDAVLYQTV---IHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVL 258
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC +G+ +A L+++M + G C P V TY L+ C+
Sbjct: 259 GLCGLGHVREAARLVDRMMMHG--CTPSVVTYGFLLRGLCR 297
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
TT T + L G +ALA M + C PD Y VI+AL G +A LL
Sbjct: 179 TTFTFGVAARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLL 238
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++M L G C DV T+ ++ C G
Sbjct: 239 DEMLLMG--CAADVNTFNDVVLGLCGLG 264
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + G A+ M++ C P++ Y+ ++++ CR G ++ AR +L+QM
Sbjct: 353 TYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQM 412
Query: 231 ELPGF 235
GF
Sbjct: 413 SAKGF 417
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+AL + RM + R P + + V ALCR+G A LL M G C PD Y
Sbjct: 163 DALLLYRRMLRDRVPPTTFTFGVAARALCRLGRARDALALLRGMARHG--CVPDAVLYQT 220
Query: 247 LISSYCKYG 255
+I + G
Sbjct: 221 VIHALVAQG 229
>gi|341606823|gb|AEK83514.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 208
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 111 RFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 170
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
N+A L ++ME C VYTYTILIS
Sbjct: 171 NEAMTLFKRMEEEE-GCDQTVYTYTILISG 199
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ +I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M
Sbjct: 18 SLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMID 77
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
GF+ PDV TY+++++ CK G
Sbjct: 78 EGFK--PDVVTYSVVVNGLCKNG 98
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 34 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 91
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 92 NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 149
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 150 CTRDSYCYNALIDALTKHG 168
>gi|297789717|ref|XP_002862796.1| hypothetical protein ARALYDRAFT_359368 [Arabidopsis lyrata subsp.
lyrata]
gi|297308523|gb|EFH39054.1| hypothetical protein ARALYDRAFT_359368 [Arabidopsis lyrata subsp.
lyrata]
Length = 378
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 8/146 (5%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+N+A E++ W ER H + + +V AR N L L EMS G G V
Sbjct: 92 VNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVN--- 148
Query: 172 VTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
TC+ VL + + E M++F+ RP AY +I A V + + L +Q
Sbjct: 149 -TCIEMVLSCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLALFQQ 207
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M+ G+ P V+ +T LI + K G
Sbjct: 208 MQELGYE--PTVHLFTTLIRGFAKEG 231
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LI+ +EG V+ AL+ MK D+ YNV I++ +VG + A
Sbjct: 216 TVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFF 275
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++E G + PD TYT +I CK
Sbjct: 276 HEIEANGLK--PDEVTYTSMIGVLCK 299
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V W F E+ NG T T +I VL + ++EA+ F +++ R
Sbjct: 262 FGKVGKVDMAWKFFHEI--EANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRV 319
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P YAYN +I G F++A LLE+ G P V Y +++ K G
Sbjct: 320 PCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKG--SIPSVIAYNCILTCLRKMG 371
>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 592
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 12/124 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+V CKE I+ A+ +V G + GE+ T LI + ++EA
Sbjct: 294 DVLCKEGKIMQAK--SVIGFMILV--------GEVPDVFTYNSLIDRYCLQNQMDEATRV 343
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F M C PD+ AY +I+ C++ N NKA LL++M GF PDV T+T LI +
Sbjct: 344 FELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFT--PDVVTWTTLIGGF 401
Query: 252 CKYG 255
C+ G
Sbjct: 402 CQVG 405
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+L++M R N +V STV + L ++GLV+EAL M +P++ Y +I
Sbjct: 203 WLRKMEERNWNPNVVVYSTV---MDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQ 259
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC G + +A LL++M G PD+ + IL+ CK G
Sbjct: 260 GLCNFGRWKEAGSLLDEMMKMGVM--PDLQSLNILVDVLCKEG 300
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EMS G G T TCLI+ L G EA + M + PD+ + N++++ LC+
Sbjct: 241 EMS--GKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCK 298
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
G +A+ ++ M L G PDV+TY LI YC
Sbjct: 299 EGKIMQAKSVIGFMILVGE--VPDVFTYNSLIDRYC 332
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G++ T ++ L + L++EAL+ F+ M++ ++ Y+++++ +C G N A
Sbjct: 421 GQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTA 480
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L + G + +VY YTI+I+ + K G+
Sbjct: 481 LELFSCLPAKGLQI--NVYAYTIMINGFAKQGL 511
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G +EA+ +M++ P+V Y+ V++ LC+ G ++A L +M G
Sbjct: 187 LINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKG 246
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ P++ TYT LI C +G
Sbjct: 247 IK--PNLVTYTCLIQGLCNFG 265
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
LV + M + P V + ++IN LC G+ +A L++ +E G+R DV T
Sbjct: 126 LVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYR--SDVKT 183
Query: 244 YTILISSYCKYG 255
Y +LI+ CK G
Sbjct: 184 YGVLINGLCKMG 195
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L +G V A+ +++ R DV Y V+IN LC++G ++A L +M
Sbjct: 148 TFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKM 207
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
E + P+V Y+ ++ CK G+
Sbjct: 208 EERNWN--PNVVVYSTVMDGLCKDGL 231
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +N AL F + + +VYAY ++IN + G +KA LL ME G C PD
Sbjct: 475 GKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENG--CMPDSC 532
Query: 243 TYTILI 248
TY + +
Sbjct: 533 TYNVFV 538
>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
Length = 649
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+F+R + +L+EM +G G + T +I G ++EAL M F C
Sbjct: 306 LFSRRGEMDHAGAYLREM--KGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGC 363
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV YN ++N LC+ A LL +ME G PD+ T+T LI YC+ G
Sbjct: 364 LPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGV--TPDLCTFTTLIHGYCRQG 416
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 154 FLKEMSRRGNGELVTTS--TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
L EM RG VT T T LI +G AL F + + R RPDV YN +I
Sbjct: 389 LLNEMEERG----VTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLI 444
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +CR G+ KA L + M P+ TY+ILI S+C+ G
Sbjct: 445 DGMCRKGDLAKANELWDDMH--AREILPNHITYSILIDSHCEKG 486
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGN--GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ R NVK FL++M R+ N +L+T +T LI +E ++ A F M++
Sbjct: 517 YCRSGNVKKGQQFLQKM-RQDNVFPDLITFNT---LIHGYIKEENMHGAFNVFNIMEKEM 572
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RPD YN++IN GN A + + M G PD YTY LI+ + G
Sbjct: 573 VRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIE--PDRYTYMSLINGHVTAG 626
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
+ EM +R V T V LI G V+ A+A M +P + YN V+ L
Sbjct: 180 ISEMEKRCVFPDVVTHNV--LIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGL 237
Query: 215 CRVGNFNKARFLLEQMELPGFRC--PPDVYTYTILISSYCKYG 255
C+ F+KA+ + M+ +C PDV ++ ILI +C+ G
Sbjct: 238 CKHRRFDKAKEVFRTMD----QCSVAPDVRSFNILIGGFCRVG 276
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 144 RGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
R +V + M+ RG +VT ++V +K L + ++A F M Q P
Sbjct: 204 RAGDVDAAIALVDSMANRGLKPGIVTYNSV---LKGLCKHRRFDKAKEVFRTMDQCSVAP 260
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
DV ++N++I CRVG +A ++M+ PDV +++ LI + + G
Sbjct: 261 DVRSFNILIGGFCRVGEVKEAVKFYKEMQHR--YVTPDVVSFSCLIGLFSRRG 311
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI E+G V +A M + P++ YN +I CR GN K + L++M
Sbjct: 474 TYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKM 533
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
PD+ T+ LI Y K
Sbjct: 534 RQDNVF--PDLITFNTLIHGYIK 554
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
V+ + FL EM ++GN L T +IK G V + +M+Q PD+ +
Sbjct: 488 VEDAFGFLDEMVKKGN--LPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITF 545
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N +I+ + N + A + ME R PD TY ++I+ + + G
Sbjct: 546 NTLIHGYIKEENMHGAFNVFNIMEKEMVR--PDAVTYNMIINGFSEQG 591
>gi|341606827|gb|AEK83516.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 207
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 111 RFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 170
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
N+A L ++ME C VYTYTILIS
Sbjct: 171 NEAMTLFKRMEEEE-GCDQTVYTYTILISG 199
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ +I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M
Sbjct: 18 SLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMID 77
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
GF+ PDV TY+++++ CK G
Sbjct: 78 EGFK--PDVVTYSVVVNGLCKNG 98
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 34 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 91
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 92 NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 149
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 150 CTRDSYCYNALIDALTKHG 168
>gi|341606821|gb|AEK83513.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 205
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 111 RFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 170
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
N+A L ++ME C VYTYTILIS
Sbjct: 171 NEAMTLFKRMEEEE-GCDQTVYTYTILISG 199
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ +I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M
Sbjct: 18 SLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMID 77
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
GF+ PDV TY+++++ CK G
Sbjct: 78 EGFK--PDVVTYSVVVNGLCKNG 98
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 34 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 91
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 92 NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 149
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 150 CTRDSYCYNALIDALTKHG 168
>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 418
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
GNG + T T LI + G ++ A+ T+ M + PD+ YN +I LC+ G+
Sbjct: 234 GNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLK 293
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A+ L+++M + G + PD TYT LI CK G
Sbjct: 294 QAQDLIDEMSMKGLK--PDKITYTTLIDGSCKEG 325
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++K D + EMS +G T T LI +EG + AL RM + R
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKP--DKITYTTLIDGSCKEGDLETALYYRKRMIKENIR 343
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D AY +I+ LCR G A +L +M G + PD TYT++I+ +CK G
Sbjct: 344 LDDVAYTALISGLCREGQSVDAEKMLREMLSVGLK--PDNGTYTMIINEFCKKG 395
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193
TC+++ F + K +W F KE+ G + L+ +EG + A + F
Sbjct: 103 TCRKVLEHFMKLKYFKLVWGFYKEILECGYP--ASLYFFNILMHRFCKEGEMRLAQSVFD 160
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ ++ RP V ++N ++N R+G+ ++ L M G + PDVYTY++LI+ CK
Sbjct: 161 EITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQ--PDVYTYSVLINGLCK 218
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++E M +PDVY Y+V+IN LC+ N A L +M G P+
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGL--VPNGV 242
Query: 243 TYTILISSYCKYG 255
T+T LI +CK G
Sbjct: 243 TFTTLIDGHCKTG 255
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L +E +N+A F M P+ + +I+ C+ G+ + A ++M
Sbjct: 208 TYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEM 267
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF PD+ TY LI CK G
Sbjct: 268 LRQGF--SPDLITYNTLIYGLCKKG 290
>gi|147840993|emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]
Length = 418
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R N + ++ KEM N + + + LI L + G +E M++ C+
Sbjct: 229 LCRVNELSLAFELKKEMV--ANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCK 286
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD YN +I+ C +F A +LE+M + G C PDV +Y ++IS CK G
Sbjct: 287 PDTVTYNAMISGFCNEKDFEAAYGVLEEMVVKG--CKPDVISYNVIISGLCKEG 338
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L+EM R NG T T +I E A M C+PDV +YNV+I+ L
Sbjct: 277 LEEM--RENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVVKGCKPDVISYNVIISGL 334
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
C+ G + +A L E M G C PDV +Y IL C+ GMQ
Sbjct: 335 CKEGKWREANDLFEDMPRRG--CTPDVGSYRILFDGLCE-GMQ 374
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+ VT M F + + + L+EM +G V + V +I L +EG EA
Sbjct: 288 DTVTYNAMISGFCNEKDFEAAYGVLEEMVVKGCKPDVISYNV--IISGLCKEGKWREAND 345
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F M + C PDV +Y ++ + LC FN+A F+L++M G+ P + T + +
Sbjct: 346 LFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFILDEMVFKGY--APKSASXTKFVEA 403
Query: 251 YC 252
C
Sbjct: 404 LC 405
>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
Length = 1031
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T T C ++ L E G + A F RM PD Y Y++VI +LC++ +KA +L
Sbjct: 124 STFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTML 183
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++ ++ GF+ P+V YTIL ++CK G
Sbjct: 184 DKAKVRGFK--PEVSVYTILTRAFCKTG 209
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ NV D + E G V T ++ L L + G ++EA M C
Sbjct: 341 LCKQQNVDRAKDLVDEFVSSGFVPDVVTYSI--LADGLCKRGRIDEAFELVKEMSGKGCT 398
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++ YN +I+ LC+ KA LLE + GF PDV TYTI++ CK G
Sbjct: 399 PNLVTYNTLIDGLCKASKTEKAYELLESLVSSGF--VPDVVTYTIIVDGLCKEG 450
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 153 DFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+ L EM RG VT TVT ++ L + G A + M + CRP YN +
Sbjct: 282 EMLHEMVDRG----VTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTL 337
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I+ LC+ N ++A+ L+++ GF PDV TY+IL CK G
Sbjct: 338 ISGLCKQQNVDRAKDLVDEFVSSGF--VPDVVTYSILADGLCKRG 380
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R N+ G +FLKEM+ R V T + LI L + ++A + M PD
Sbjct: 238 RKNDCDGALEFLKEMNERKVAPDVFTYNI--LIDGLCKASKTDKASEMLHEMVDRGVTPD 295
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+N +++ LC+ G F +A LL M C P TY LIS CK
Sbjct: 296 TVTFNSIMDGLCKAGKFERAHSLLAVM--AERNCRPSCCTYNTLISGLCK 343
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L + G V+EA M C PDV +YN++I+ L + +AR +L+QM G P
Sbjct: 583 LCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGI--P 640
Query: 239 PDVYTYTILISSYCK 253
PD TY L++ +CK
Sbjct: 641 PDAVTYNTLMAQFCK 655
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G +T+ T LI + ++EAL M Q C P V YN+VI LC++ +KA
Sbjct: 812 GLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKA 871
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L ++M + G +YT+LI C G
Sbjct: 872 WELFDEMAVRGI--VASSVSYTVLIYGLCGQG 901
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 152 WDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
++ +KEMS +G LVT +T LI L + +A + PDV Y ++
Sbjct: 386 FELVKEMSGKGCTPNLVTYNT---LIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTII 442
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ LC+ G +KA ++E M G C P V TYT L+ C+ G
Sbjct: 443 VDGLCKEGRLDKALKMVEGMLKRG--CTPSVITYTALMEGLCRTG 485
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + + ++ L+ + G V T T+ ++ L +EG +++AL M + C
Sbjct: 411 LCKASKTEKAYELLESLVSSGFVPDVVTYTI--IVDGLCKEGRLDKALKMVEGMLKRGCT 468
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P V Y ++ LCR G ++A + ++M C D Y L++ YCK
Sbjct: 469 PSVITYTALMEGLCRTGRVDEAHHIFKEM--VSKDCTADALAYVSLVNGYCK 518
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+EG ++E F M C P++ YN+V++ LC+ G ++A LE M G C PD
Sbjct: 550 KEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAG--CVPD 607
Query: 241 VYTYTILIS 249
V +Y I+I
Sbjct: 608 VVSYNIIID 616
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N + + L + RG V+ T+ L + + G + +AL F + PD
Sbjct: 174 NQIDKAFTMLDKAKVRGFKPEVSVYTI--LTRAFCKTGRLKDALEIFRNIPS----PDAI 227
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
AYN +I+ CR + + A L++M + PDV+TY ILI CK
Sbjct: 228 AYNAIIHGHCRKNDCDGALEFLKEMN--ERKVAPDVFTYNILIDGLCK 273
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+ AL M + + PDV+ YN++I+ LC+ +KA +L +M G PD T+
Sbjct: 243 DGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGV--TPDTVTFN 300
Query: 246 ILISSYCKYG 255
++ CK G
Sbjct: 301 SIMDGLCKAG 310
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTT-STVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
++ N + ++ + EM R NG +V+ +T +I L +EG + +AL M
Sbjct: 688 LSQTNRLGDAYELMHEMLR--NGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGV 745
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ YN+ I+ LC+ G ++A LL +M+ R D +YT +I CK
Sbjct: 746 EANTVTYNIFIDRLCKEGRLDEASSLLSEMDT--LR---DEVSYTTVIIGLCK 793
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L++ L G V+EA F M C D AY ++N C+ +A+ +++
Sbjct: 473 TYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVD-- 530
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G R P + Y L+ YCK G
Sbjct: 531 ---GIRGTPYIDVYNALMDGYCKEG 552
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R P + YN +++ C+ G ++ + E M G C P++ TY I++ CK+G
Sbjct: 532 IRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRG--CVPNIKTYNIVMDGLCKHG 587
>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 845
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 32/217 (14%)
Query: 41 NP-FTIESVADVLKSIPRF-FFQSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLG 98
NP + +E+V+ +L+ RF + + GFR ++LK + DN AN
Sbjct: 282 NPGYVVENVSGILR---RFKWGHAAEEALHNFGFRMDAYQANQVLK-QMDNYAN------ 331
Query: 99 PAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEM 158
A F++W++R F H+ T M R + L EM
Sbjct: 332 ----------------ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINRLLDEM 375
Query: 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
+ +G T T LI G +NEA+ F +M++ C PD Y +I+ + G
Sbjct: 376 VK--DGCKPNTVTYNRLIHSYGRANYLNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAG 433
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ A + ++M+ G PD +TY+++I+ K G
Sbjct: 434 FLDIAMDMYQRMQAAGLS--PDTFTYSVIINCLGKAG 468
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT + + R N + + K+M G + VT T LI + + G ++ A+
Sbjct: 383 NTVTYNRLIHSYGRANYLNEAMNVFKQMQEAGCEPDRVTYCT---LIDIHAKAGFLDIAM 439
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
+ RM+ PD + Y+V+IN L + G+ A L E+ G C P++ T+ I+I+
Sbjct: 440 DMYQRMQAAGLSPDTFTYSVIINCLGKAGHLPAAHRLF--CEMVGQGCTPNLVTFNIMIA 497
Query: 250 SYCK 253
+ K
Sbjct: 498 LHAK 501
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT M + A+ N + ++M G + VT S V ++VLG G + EA
Sbjct: 488 NLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIV---MEVLGHCGFLEEAE 544
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
F M++ PD Y ++++ + GN KA ++M G R P+V T L+S
Sbjct: 545 GVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQEMLHAGLR--PNVPTCNSLLS 602
Query: 250 SYCK 253
++ +
Sbjct: 603 TFLR 606
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 150 GLWDFLKEMSRR--GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G D +M +R G T T + +I LG+ G + A F M C P++ +
Sbjct: 433 GFLDIAMDMYQRMQAAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTF 492
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
N++I + N+ A L M+ GF+ PD TY+I++
Sbjct: 493 NIMIALHAKARNYETALKLYRDMQNAGFQ--PDKVTYSIVM 531
>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
Length = 497
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L G + AL F+R RC P+V Y+V+I+ LC+ ++A LLE M+ G
Sbjct: 85 LVTGLCRAGKIETAL-EFFRKMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARG 143
Query: 235 FRCPPDVYTYTILISSYCK 253
C PDV TYTIL+ CK
Sbjct: 144 --CSPDVITYTILVDGLCK 160
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 79/189 (41%), Gaps = 15/189 (7%)
Query: 69 QTGFRHRT-PLKQRILKKEA-DNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFF 126
+TG R L Q +L + + D I+ N+LV G I A EF+ ++
Sbjct: 57 RTGKLERAMALFQEMLDRRSHDVISFNILVTGLCRAGK-------IETALEFFRKMDD-- 107
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186
N +T + + N V + L+ M RG V T T+ L+ L +E V
Sbjct: 108 RCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTI--LVDGLCKESKVA 165
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
A M C P++ YN +++ LCR + A L+ M G C P+V TY
Sbjct: 166 AAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRG--CTPNVVTYGT 223
Query: 247 LISSYCKYG 255
LI CK G
Sbjct: 224 LIDGLCKVG 232
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ V +D + M+ G + ++VT ST LI L + G V+EA RM +
Sbjct: 333 LCKAGKVDEAFDLYEVMTGDGCDADVVTYST---LIDGLCKAGRVDEAHLLLARMVRMGT 389
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P YN +I LC + + ++A L+E+ME C P TY ILI C+
Sbjct: 390 PPSTMTYNSLIKGLCDLNHLDEAIELVEEMERS--NCAPSAVTYNILIHGMCR 440
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + V+E++A R +PDV Y+ VI LCR ++A LL ++ G
Sbjct: 259 LINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRG 318
Query: 235 FRCPPDVYTYTILISSYCKYG 255
CPPDV Y+ LI CK G
Sbjct: 319 --CPPDVILYSTLIDGLCKAG 337
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT S+V I L ++EA +K C PDV Y+ +I+ LC+ G ++A
Sbjct: 287 DVVTYSSV---IYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAF 343
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L E M G C DV TY+ LI CK G
Sbjct: 344 DLYEVM--TGDGCDADVVTYSTLIDGLCKAG 372
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + V W+ L+EM G LVT ++ L+ L V++ALA M C
Sbjct: 158 LCKESKVAAAWEVLREMLDAGCVPNLVTYNS---LLHGLCRARRVSDALALMRDMTCRGC 214
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+V Y +I+ LC+VG A +L M G PD+ Y +LI+ CK
Sbjct: 215 TPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGG--TPDLMIYNMLINGLCK 265
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R V +++M+ RG +VT T LI L + G V +A A M
Sbjct: 193 LCRARRVSDALALMRDMTCRGCTPNVVTYGT---LIDGLCKVGRVKDACAMLADMIDKGG 249
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD+ YN++IN LC+ +++ LL + G + PDV TY+ +I C+
Sbjct: 250 TPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIK--PDVVTYSSVIYGLCR 300
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+ A F MK C P + YN +++ L R G +A L ++M R DV ++
Sbjct: 27 DRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEML---DRRSHDVISFN 83
Query: 246 ILISSYCKYG 255
IL++ C+ G
Sbjct: 84 ILVTGLCRAG 93
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L M R G +T T LIK L + ++EA+ M++ C P YN++I+
Sbjct: 380 LLARMVRMGTPP--STMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHG 437
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+CR+ + A Q E+ PD TY+IL+
Sbjct: 438 MCRMERVDSAALDYFQ-EMIDNGVIPDHITYSILL 471
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M+ C P+V YN +I+ LC+ ++A+ L E M+ C P + TY L+ +
Sbjct: 1 MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMK--SVECSPSMVTYNTLLDGLFRT 58
Query: 255 G 255
G
Sbjct: 59 G 59
>gi|125570756|gb|EAZ12271.1| hypothetical protein OsJ_02159 [Oryza sativa Japonica Group]
Length = 596
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
RG + + FL+E+ +G + VT +T L+ G + +AL F M R
Sbjct: 219 ALCRGEDAERAQGFLEELEEQGFEPDGVTYNT---LLSGYCRRGRLQDALHLFDVMPYRR 275
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD+ ++ VV++ALC+ G AR + ++M G PD Y++LI+ YC G
Sbjct: 276 VQPDLVSHTVVMDALCKAGRVRDARRMFDRMIQSGLS--PDAVAYSVLIAGYCNEG 329
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++ A M + RP+ + +N+++ ALCR + +A+ LE++E GF PD
Sbjct: 189 GRFDDLWAARAVMARAGVRPNAHTFNILVAALCRGEDAERAQGFLEELEEQGFE--PDGV 246
Query: 243 TYTILISSYCKYG 255
TY L+S YC+ G
Sbjct: 247 TYNTLLSGYCRRG 259
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 160 RRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
RR +LV+ + V + L + G V +A F RM Q PD AY+V+I C G
Sbjct: 274 RRVQPDLVSHTVV---MDALCKAGRVRDARRMFDRMIQSGLSPDAVAYSVLIAGYCNEGR 330
Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+ARFLL +M GF + + +++ S+ K+
Sbjct: 331 LREARFLLMEMVGCGFS--SEGFALKVVVESHVKF 363
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R +G ++ + + +CLI L E+ N A + M + P + YN++I C+
Sbjct: 377 RKHGVVIPSQSYSCLIGALCEDMRPNAARGLLHWMIEDGHSPSLAIYNMIIECFCQCDIV 436
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A L ++E+ D TY LI+ +C+ G
Sbjct: 437 EEA--LDVKVEMISREVRLDFNTYRALITCFCRLG 469
>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
Length = 637
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 141 VFARG----NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196
V RG ++KG DF M R N L +T + L+ G ++ A+ + MK
Sbjct: 332 VLIRGLCCIGDLKGALDFFNSMKR--NALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMK 389
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+P+V Y +I+ LC+ F++A L+++M + CPP+ T+ LI C G
Sbjct: 390 SSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMD--NCPPNTVTFNTLIGRLCDCG 446
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 63/162 (38%), Gaps = 44/162 (27%)
Query: 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189
H+E T + + A +V G+ L+EM RG T + I G + AL
Sbjct: 53 HHEATVRRL----AAAGDVDGVQYALQEMRLRGVA--CTEDALVAAIGAFARAGSADRAL 106
Query: 190 ATFYRMKQFRCR------------------------------------PDVYAYNVVINA 213
TFYR CR P+VY YN++I A
Sbjct: 107 KTFYRASDLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRA 166
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ + AR +L++M G C PD ++ ++S CK G
Sbjct: 167 LCQNDRVDAARKMLDEMSRKG--CHPDEVSHGTIVSGMCKLG 206
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 112 INKATEFYHWVERFFHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTT 169
+ +A +H + R + H N+ T E+ R N K + + EM G LVT
Sbjct: 448 VGRALNVFHGMRR--NGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTY 505
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+TV I L + + A+ RM +PD + +N +I+A C+ G + A LL Q
Sbjct: 506 NTV---INCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQ 562
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M CP +V YTILIS C G
Sbjct: 563 MN--AVNCPRNVVAYTILISELCNQG 586
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+K E+G V++AL+ ++ M P +YNV+I LC +G+ A M
Sbjct: 294 TFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSM 353
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ P+ TY+ L+ + G
Sbjct: 354 KRNALL--PNATTYSTLVDGFSNAG 376
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 37/122 (30%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-------------------DVYA--- 206
T T LI L + G V AL F+ M++ C P D +A
Sbjct: 432 TVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVI 491
Query: 207 -------------YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN VIN LC++ A LL +M + G + PD +T+ +I +YCK
Sbjct: 492 EMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQ--PDAFTFNAIIHAYCK 549
Query: 254 YG 255
G
Sbjct: 550 EG 551
>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 724
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I +E +N A F RMK+ P+V Y +IN C+ GNF++A L+ M
Sbjct: 383 TYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLM 442
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ GFR P++YTY +I S CK
Sbjct: 443 DDEGFR--PNIYTYNAVIDSLCK 463
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+L M +RG + +T T ++ L E GLVN A+ F +M +P++ + +I+
Sbjct: 262 WLSGMIQRGF--IPDNATCTLILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDG 319
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G+ +A +LE+M G++ P+VYT+T LI CK G
Sbjct: 320 LCKKGSIKQAFEMLEEMVRNGWK--PNVYTHTALIDGLCKRG 359
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC- 200
+ ++K ++ L+EM R NG T T LI L + G +A F ++ +
Sbjct: 320 LCKKGSIKQAFEMLEEMVR--NGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIY 377
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P+V+ Y +I C+ N+A L +M+ G P+V TYT LI+ +CK G
Sbjct: 378 KPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLF--PNVNTYTTLINGHCKAG 430
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T T +I +EG + AL F+ MK+ C PD + Y +I+ LC+ ++A
Sbjct: 551 GLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEA 610
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
L E M G PP+V T L YCK
Sbjct: 611 CKLYEAMIDRGLS-PPEV-TRVTLAYEYCK 638
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQME 231
T LI L ++G + +A M + +P+VY + +I+ LC+ G KA R L+ +
Sbjct: 314 TSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVR 373
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
++ P+V+TYT +I YCK
Sbjct: 374 SDIYK--PNVHTYTSMIGGYCK 393
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ ++ + +ALA F RM + D+ N++I A CR ++ L + +
Sbjct: 488 TYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLV 547
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P TYT +IS YCK G
Sbjct: 548 VSLGL--VPTKETYTSMISGYCKEG 570
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE + N + L+ +KE G +T T LI + G + A
Sbjct: 392 CKEDKL-----NRAEMLFSRMKE-----QGLFPNVNTYTTLINGHCKAGNFDRAYELMNL 441
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC--PPDVYTYTILISSYC 252
M RP++Y YN VI++LC+ +A LL + F C D TYTILI C
Sbjct: 442 MDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNK----AFSCGLEADGVTYTILIQEQC 497
Query: 253 K 253
K
Sbjct: 498 K 498
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
M + G ++ T+ C++++ E GL++ A F M PD ++ +++ R
Sbjct: 194 MDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSFKLMVIGCFRD 253
Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
G +A L M GF PD T T+++S+ C+ G+
Sbjct: 254 GKIQEADRWLSGMIQRGF--IPDNATCTLILSALCENGL 290
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 12/112 (10%)
Query: 150 GLWDF----LKEMSRRGNGELVTTSTVTCLIKVLG--EEGLVNEALATFYRMKQFRCRPD 203
GL D+ EMS RG V + + + V+G +G + EA M Q PD
Sbjct: 219 GLIDYAENVFDEMSVRG----VCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPD 274
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++++ALC G N+A + +M GF+ P++ +T LI CK G
Sbjct: 275 NATCTLILSALCENGLVNRAIWYFRKMIDLGFK--PNLINFTSLIDGLCKKG 324
>gi|449485877|ref|XP_004157297.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g07740, mitochondrial-like [Cucumis sativus]
Length = 460
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ LG+ G ++E + MK+ R +PDV YN+++N LC+ G A +L +M++ G
Sbjct: 297 LMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLVKMQVGG 356
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+ TY ++I YC G
Sbjct: 357 --CDPNAATYRMMIDGYCNAG 375
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI+ G+ LV + + F++M F C + ++NV++N L F+KA + +Q G
Sbjct: 122 LIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSKASEIFQQAYEMG 181
Query: 235 FRCPPDVYTYTILISSYCKYG 255
FR P+ +Y I+I + K G
Sbjct: 182 FR--PNSVSYNIMIKGWIKKG 200
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ N+ + L EM +R V T + L+ L +EG V +A +M+ C
Sbjct: 301 LGKTGNIDEMESLLNEMKKRRLKPDVVTYNI--LVNYLCKEGKVGDAYKVLVKMQVGGCD 358
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+ Y ++I+ C G+F+ A +L M + G P + T+ L+ K
Sbjct: 359 PNAATYRMMIDGYCNAGDFDGAMKILNAMLMSGHY--PHLKTFASLVVGLLK 408
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 13/122 (10%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT----CLIKVLGEEGLVNEALATFY 193
+G++ +G L F K M+ +G+ T + C I G EA +
Sbjct: 228 LGVLCRKGEMDTALCLF-KNMTEKGHHPNAVTYALLMEGWCFI------GKYKEAKKLMF 280
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
M+ C+ Y V++ L + GN ++ LL +M+ R PDV TY IL++ CK
Sbjct: 281 DMEFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLNEMKKR--RLKPDVVTYNILVNYLCK 338
Query: 254 YG 255
G
Sbjct: 339 EG 340
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK ++G +A F M + +P V YN + LCR G + A L + M G
Sbjct: 192 MIKGWIKKGGWEQACNLFDEMLEKGVQPSVVTYNSXLGVLCRKGEMDTALCLFKNMTEKG 251
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+ TY +L+ +C G
Sbjct: 252 HH--PNAVTYALLMEGWCFIG 270
>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T T L+K L EG + EA+ F M F CRP V+I+ LCR GN A L E
Sbjct: 177 TRTFTNLVKGLCLEGKIGEAVRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHE 236
Query: 229 QM----ELPGFRCPPDVYTYTILISSYCKYGM 256
M G C P V +Y+ +I S CK G+
Sbjct: 237 AMINGNSDFGINCKPTVVSYSCIIDSLCKDGL 268
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T + +C+I L ++GLV A F MK+ P+V Y +++ LC + +A+ L
Sbjct: 252 TVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLF 311
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M G PDV T+++LI + CK G
Sbjct: 312 IEMVDHGLL--PDVVTFSVLIGALCKVG 337
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 15/142 (10%)
Query: 122 VERFFHFFHNEVTCKEMGI---VFARGNNVKGL-----WDFLKEM--SRRGNGELVTTST 171
VER FF V KE GI V + + GL W+ K + +G L T
Sbjct: 269 VERAKEFF---VEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVT 325
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ LI L + G V EA F M Q P YN++I C G ++ + + +
Sbjct: 326 FSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIF--LS 383
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
+ RC D +Y+IL+ +YCK
Sbjct: 384 MVNKRCQHDAGSYSILMKAYCK 405
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L + G V+EAL FY ++ + +V +N +IN +CR A L ++ +
Sbjct: 466 LCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGMCRSEKLEIAWELFNRLCNEALQ-- 523
Query: 239 PDVYTYTILISSYCKYG 255
PDV TYTI+I CK G
Sbjct: 524 PDVVTYTIMIYGLCKVG 540
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+F EM +G V T T L+ L EA F M PDV ++V+I
Sbjct: 274 EFFVEMKEKGIFPNVVT--YTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIG 331
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
ALC+VG +A L + M P TY ILI YC GM
Sbjct: 332 ALCKVGKVKEASGLFDLMVQRYVE--PSTRTYNILIEGYCLAGM 373
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A F R+ +PDV Y ++I LC+VG KA L +ME G C P+V T+ L
Sbjct: 510 AWELFNRLCNEALQPDVVTYTIMIYGLCKVGQPQKAYDLFLEMEEKG--CAPNVVTFNTL 567
Query: 248 ISSYC 252
+ C
Sbjct: 568 MRGLC 572
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C+P V +Y+ +I++LC+ G +A+ +M+ G P+V TYT L+ C
Sbjct: 249 CKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIF--PNVVTYTSLLHGLC 299
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T T LI+ G+V+E F M RC+ D +Y++++ A C+ + A L
Sbjct: 357 STRTYNILIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMILY 416
Query: 228 EQMELPGFRCPPDVYTYT 245
+M G + P V TY+
Sbjct: 417 REMMDRGIQ--PTVITYS 432
>gi|125526348|gb|EAY74462.1| hypothetical protein OsI_02350 [Oryza sativa Indica Group]
Length = 596
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
RG + + FL+E+ +G + VT +T L+ G + +AL F M R
Sbjct: 219 ALCRGEDAERAQGFLEELEEQGFEPDGVTYNT---LLSGYCRRGRLQDALHLFDVMPYRR 275
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD+ ++ VV++ALC+ G AR + ++M G PD Y++LI+ YC G
Sbjct: 276 VQPDLVSHTVVMDALCKAGRVRDARRMFDRMIQSGLS--PDAVAYSVLIAGYCNEG 329
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++ A M + RP+ + +N+++ ALCR + +A+ LE++E GF PD
Sbjct: 189 GRFDDLWAARAVMARAGVRPNAHTFNILVAALCRGEDAERAQGFLEELEEQGFE--PDGV 246
Query: 243 TYTILISSYCKYG 255
TY L+S YC+ G
Sbjct: 247 TYNTLLSGYCRRG 259
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 160 RRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
RR +LV+ + V + L + G V +A F RM Q PD AY+V+I C G
Sbjct: 274 RRVQPDLVSHTVV---MDALCKAGRVRDARRMFDRMIQSGLSPDAVAYSVLIAGYCNEGR 330
Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+ARFLL +M GF + + +++ S+ K+
Sbjct: 331 LREARFLLMEMVGCGFS--SEGFALKVVVESHVKF 363
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R +G ++ + + +CLI L E+ N A + M + P + YN++I C+
Sbjct: 377 RKHGVVIPSQSYSCLIGALCEDMRPNAARGLLHWMIEDGHSPSLAIYNMIIECFCQCDIV 436
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A L ++E+ D TY LI+ +C+ G
Sbjct: 437 EEA--LDVKVEMISREVRLDFNTYRALITCFCRLG 469
>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Glycine max]
Length = 825
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + + L EM+ RG + +I + GLV EA RM + C
Sbjct: 285 FCKAGEFEAVDQLLTEMAARGLN--MNVKVFNNVIDAEYKYGLVTEAAEMLRRMAEMGCG 342
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ YN++IN C+ G +A LLE+ + G P+ ++YT L+ +YCK G
Sbjct: 343 PDITTYNIMINFSCKGGRIEEADELLEKAKERGLL--PNKFSYTPLMHAYCKKG 394
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEM--GIVFARGNNVK-GLWDFLKEMSRRGNGELVT 168
+++A + +H V + F V + G+V + +V L+D + + + G G +V
Sbjct: 146 LDRALQLFHTVREMHNCFPTFVASNLLLNGLVKSGKVDVALQLYDKMLQ-TDDGTGAVVD 204
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T + ++K L G + E C P V YN++I+ C+ G+ A L
Sbjct: 205 NYTTSIMVKGLCNLGKIEEGRRLIKHRWGKCCVPHVVFYNMIIDGYCKKGDLQCATRALN 264
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
++++ G P V TY LI+ +CK G
Sbjct: 265 ELKMKGVL--PTVETYGALINGFCKAG 289
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK + G + +AL+ M PD Y Y+ VI+ + + + A + QM
Sbjct: 526 MIKGFCKFGKMTDALSCLNEMNSVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHK 585
Query: 235 FRCPPDVYTYTILISSYCK 253
F+ P+V TYT LI+ +CK
Sbjct: 586 FK--PNVITYTSLINGFCK 602
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++ AL F +M + + +P+V Y +IN C+ + +A + M+ F P+V TY
Sbjct: 571 MSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFSGMK--SFDLVPNVVTY 628
Query: 245 TILISSYCKYG 255
T L+ + K G
Sbjct: 629 TTLVGGFFKAG 639
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++ AL +M + PD YN++++ LC+ G + LL +M PDVY
Sbjct: 429 GEIDVALMVREKMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEM--LDRNVQPDVY 486
Query: 243 TYTILISSYCKYG 255
+ LI + + G
Sbjct: 487 VFATLIDGFIRNG 499
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++EA+ F + + P + YN +I C+ G A L +M PD Y
Sbjct: 499 GELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNEMN--SVHHAPDEY 556
Query: 243 TYTILISSYCK 253
TY+ +I Y K
Sbjct: 557 TYSTVIDGYVK 567
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 39/144 (27%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
N+K + L+EM G + T T+ I+VLG +G ++EA RM C PDV
Sbjct: 244 NIKTVMGLLEEMESMGLRPNIYTYTIC--IRVLGRDGKIDEAYRIMKRMDDDGCGPDVVT 301
Query: 207 YNVVINALCRV-----------------------------------GNFNKARFLLEQME 231
Y V+I+ALC G+ +K + +ME
Sbjct: 302 YTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEME 361
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
G+ PDV T+TIL+++ CK G
Sbjct: 362 ADGY--APDVVTFTILVNALCKAG 383
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + +V +F K M + G + + T+ L+ +L G V++AL F ++KQ
Sbjct: 940 YGKLGHVDTACEFFKRMVKEGIRPDLKSYTI--LVDILCIAGRVDDALHYFEKLKQAGLD 997
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD+ AYN++IN L R +A L +M+ G PD+YTY LI + GM
Sbjct: 998 PDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGI--VPDLYTYNSLILNLGIVGM 1050
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 7/170 (4%)
Query: 84 KKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFA 143
K +A IA N++ + Y + LG KA ++ ++ + VT M ++
Sbjct: 464 KMKARGIAPNIVACNASLYSLAEMGRLGEAKA--MFNELKSS-GLAPDSVTYNMMMKCYS 520
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ V L EMS+ V + LI L + G V EA F RM++ P
Sbjct: 521 KVGQVDEAIKLLSEMSKVQCEPDVIV--INSLIDTLYKAGRVEEAWQMFCRMEEMNLAPT 578
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
V YN+++ L + G KA L E M G C P+ T+ L+ CK
Sbjct: 579 VVTYNILLAGLGKEGQIQKAVQLFESMN--GHGCSPNTITFNTLLDCLCK 626
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
+ V+ +W EM G V T T+ L+ L + G +NEA M++ P+++
Sbjct: 351 DKVEKIW---TEMEADGYAPDVVTFTI--LVNALCKAGRINEAFDLLDTMRKQGVLPNLH 405
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN +I+ L R + A L ME G P YTY +LI + K G
Sbjct: 406 TYNTLISGLLRANRLDDALDLFSNMESLGVE--PTAYTYILLIDYHGKSG 453
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LI L + G +++A F M + CRP+ YN+++N ++G+ + A
Sbjct: 894 TPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFF 953
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++M G R PD+ +YTIL+ C G
Sbjct: 954 KRMVKEGIR--PDLKSYTILVDILCIAG 979
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I LG EAL+ F+ M+ PD+Y YN +I L VG +A + E+++ G
Sbjct: 1006 MINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIG 1065
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ P+V+TY LI Y G
Sbjct: 1066 LK--PNVFTYNALIRGYTLSG 1084
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R N + D M G T T LI G+ G +AL TF +MK P+
Sbjct: 416 RANRLDDALDLFSNMESLGVEP--TAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPN 473
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ A N + +L +G +A+ + +++ G PD TY +++ Y K G
Sbjct: 474 IVACNASLYSLAEMGRLGEAKAMFNELKSSGL--APDSVTYNMMMKCYSKVG 523
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
S G+G T T L+ L + V+ AL FY+M CRPDV +N +I+ +
Sbjct: 604 SMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQN 663
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A +L QM+ PD T L+ K G
Sbjct: 664 QIKNAIWLFHQMKK---LLRPDHVTLCTLLPGVIKSG 697
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 39/145 (26%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V R + + +K M G G V T TV LI L +++A+ F +MK
Sbjct: 273 VLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTV--LIDALCTARKLDDAMCLFTKMKSSSH 330
Query: 201 RPD-----------------------------------VYAYNVVINALCRVGNFNKARF 225
+PD V + +++NALC+ G N+A
Sbjct: 331 KPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFD 390
Query: 226 LLEQMELPGFRCPPDVYTYTILISS 250
LL+ M G P+++TY LIS
Sbjct: 391 LLDTMRKQGVL--PNLHTYNTLISG 413
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F +NV+ W+ +EM G T T LI G+ G +NE + M C+
Sbjct: 800 FLEVHNVEVAWNLFEEMKSAGCAP--DTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCK 857
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ YN+VI+ L + +KA L + F P T+ LI K G
Sbjct: 858 PNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTP--CTFGPLIDGLLKSG 909
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ G+ G V+ A F RM + RPD+ +Y ++++ LC G + A E+++ G
Sbjct: 936 LVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAG 995
Query: 235 FRCPPDVYTYTILISS 250
PD+ Y ++I+
Sbjct: 996 L--DPDLVAYNLMING 1009
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
S + +IKVL + + A F + K+ +P + YN++I+ V N A L E
Sbjct: 755 SVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFE 814
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M+ G C PD +TY LI ++ K G
Sbjct: 815 EMKSAG--CAPDTFTYNSLIDAHGKSG 839
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G ++ + LI L + G EAL + RM +P + ++ ++ A + N
Sbjct: 186 REAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNI 245
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILI 248
LLE+ME G R P++YTYTI I
Sbjct: 246 KTVMGLLEEMESMGLR--PNIYTYTICI 271
>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
Length = 789
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T ++K L E G V +AL M + PD YNV+I C +G ++AR L Q+E+
Sbjct: 340 TIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSL--QLEI 397
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
C P+V TY+ILIS C+ G+
Sbjct: 398 SRHDCFPNVKTYSILISGMCRNGL 421
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
+NP LG F+ W F F E +C + + N GL + + +
Sbjct: 67 QNPPNPQLGF----RFFIWASNFKRFRAWE-SCDLITDLLINQN---GLELYCQTLEALK 118
Query: 163 NGEL-VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
NG + V LIKV + GL ++A+ TF M+ F C PDVY YN++++ L
Sbjct: 119 NGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLI------ 172
Query: 222 KARFLLEQM----ELPGFRCPPDVYTYTILISSYCKYG 255
+ FLL + + C P+V T++ILI CK G
Sbjct: 173 QKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSG 210
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+G ++ ++++ +++ L + GL+++A ++ P +Y YN+++N C++GNF
Sbjct: 481 QGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNF 540
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
N A L +M+ G PD TY LI+ ++
Sbjct: 541 NGAYKLFREMQFKGL--SPDTVTYGTLINGLLRF 572
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
A V+ + L EM+ +G + T LIK + GL++EA + + + C
Sbjct: 346 LAEAGKVRDALELLNEMTE--SGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCF 403
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V Y+++I+ +CR G A+ + +ME G C P T+ LI CK G
Sbjct: 404 PNVKTYSILISGMCRNGLTRDAQEIFNEMEKLG--CYPSAVTFNSLIDGLCKTG 455
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
VTC + F + V + L+ + +G ++ +CLI+ L + +
Sbjct: 267 VTCNALLNGFCMLDRVDEAFSLLRLFEK--DGYVLDVRGYSCLIRGLFRAKRYEDVQLLY 324
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+M + +PDVY Y +++ L G A LL +M G PD Y +LI +C
Sbjct: 325 RKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGV--VPDTVCYNVLIKGFC 382
Query: 253 KYGM 256
G+
Sbjct: 383 DMGL 386
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
L +T + LI L + G V +AL F M Q PD + Y VVI+ LCR + A
Sbjct: 193 LPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYR 252
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYC 252
L ++M+ G PD T L++ +C
Sbjct: 253 LFDKMKDSGV--GPDFVTCNALLNGFC 277
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI + GL +A F M++ C P +N +I+ LC+ G KA L +M
Sbjct: 408 TYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKM 467
Query: 231 EL 232
E+
Sbjct: 468 EI 469
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ NVK EM++RG L T +I L V++A F +MK
Sbjct: 206 LCKSGNVKDALHLFDEMTQRGI--LPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVG 263
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
PD N ++N C + ++A LL E G+ DV Y+ LI
Sbjct: 264 PDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVL--DVRGYSCLI 308
>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 642
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
R+ ++ + IN +F+ W + +F H+ T + ++ ++E+ R
Sbjct: 97 RSILEIDVEINVKIQFFKWAGKRRNFQHDCSTYMALIRCLEEARLYGEMYRTIQEVVRNT 156
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
V ++ L+K LG +V++AL+ FY+ K +C+P YN VI L + G K
Sbjct: 157 YVS-VGPVVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEK 215
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +M G C PD TY+ LISSY K G
Sbjct: 216 VHEVYTEMCNEG-DCFPDTITYSALISSYEKLG 247
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
V++ +IK G+ G ++EA+ F MK PDVYAYN +++ + + G N+A L
Sbjct: 477 VSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSL 536
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L +ME G C D+ ++ I+++ + + G+
Sbjct: 537 LRKMEENG--CTADINSHNIILNGFARTGV 564
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + D EM +G+G V L+ + + G+VNEA + +M++ C
Sbjct: 489 FGKCGKLSEAVDLFNEMKNQGSGPDVYA--YNALMSGMVKAGMVNEANSLLRKMEENGCT 546
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
D+ ++N+++N R G +A + E M+ G + PD TY L+ + GM
Sbjct: 547 ADINSHNIILNGFARTGVPRRAIEMFETMKHCGIK--PDGVTYNTLLGCFAHAGM 599
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+GI F G K L D +EM R G T T T LIK LG+ G V EA + M
Sbjct: 275 LGIYFKVGKVEKAL-DLFEEMKRAGCSP--TVYTYTELIKGLGKAGRVEEAYDLYKNMLT 331
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
PDV N ++N L +VG + + +M +RC P V +Y +I +
Sbjct: 332 DGLTPDVVFLNNLMNILGKVGRLEELTNVFNEM--GTWRCTPTVVSYNTVIKA 382
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFR 199
+ V+ +D K M G +T V L+ +LG+ G + E F M +R
Sbjct: 313 LGKAGRVEEAYDLYKNMLTDG----LTPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWR 368
Query: 200 CRPDVYAYNVVINALCRV-GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C P V +YN VI AL ++ ++M+ G P +TY+ILI YCK
Sbjct: 369 CTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGV--SPSEFTYSILIDGYCK 421
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T + LI + G + A+ F MK +P Y ++ +VG KA L E
Sbjct: 233 TITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFE 292
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M+ G C P VYTYT LI K G
Sbjct: 293 EMKRAG--CSPTVYTYTELIKGLGKAG 317
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 168 TTSTVTCLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
T + +IK L E + V+E + F +MK P + Y+++I+ C+ KA L
Sbjct: 372 TVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLL 431
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCK 253
LE+M+ GF PP Y LI++ K
Sbjct: 432 LEEMDEKGF--PPCPAAYCSLINALGK 456
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L+ + + G V +AL F MK+ C P VY Y +I L + G +A L
Sbjct: 267 TEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLY 326
Query: 228 EQMELPGFRCPPDV 241
+ M G PDV
Sbjct: 327 KNMLTDGL--TPDV 338
>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + +WD + EM RG V T LI L + G ++ A+A F +MK R
Sbjct: 384 LCKSGRISYVWDLIDEMRDRGIPANVIT--YNSLIDGLCKNGHLDRAIALFNKMKDQGIR 441
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P + + ++++ LC+ G A+ + + G+ DVY Y ++I+ +CK G+
Sbjct: 442 PCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHL--DVYKYNVMINGHCKQGL 494
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L +EG V EA M + +PDV Y+ +++ V KA+ + M
Sbjct: 271 TYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAM 330
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
L G PDV++YTILI+ +CK M
Sbjct: 331 SLMGV--TPDVHSYTILINGFCKNKM 354
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI + +V+EAL F M Q P + Y+ +I+ LC+ G + L+++M
Sbjct: 343 TILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRD 402
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G P +V TY LI CK G
Sbjct: 403 RGI--PANVITYNSLIDGLCKNG 423
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 14/105 (13%)
Query: 152 WDFLKEMSRRG-NGELVTTSTVT---CLIKVLGEE-GLVNEALATFYRMKQFRCRPDVYA 206
+ EM+ +G + ++VT +T+ C+ L E GL+NE + P+VY
Sbjct: 219 YGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLK-------TINPNVYT 271
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
YN++++ALC+ G +A+ +L M + PDV TY+ L+ Y
Sbjct: 272 YNILVDALCKEGKVKEAKNVLAVMLKACVK--PDVITYSTLMDGY 314
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L + LV+EA F M DV Y +I C +A LL +M L
Sbjct: 205 IIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKT 264
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+VYTY IL+ + CK G
Sbjct: 265 IN--PNVYTYNILVDALCKEG 283
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++A++ F RM R P + +N ++++ ++ +++ A L ++EL G + PD+ T
Sbjct: 40 VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQ--PDLITL 97
Query: 245 TILISSYCKYGMQT 258
ILI+ +C G T
Sbjct: 98 NILINCFCHMGQIT 111
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V + KEM ++ + T + LI L + G ++ M+
Sbjct: 349 FCKNKMVDEALNLFKEMHQKN--MVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIP 406
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+V YN +I+ LC+ G+ ++A L +M+ G R P +T+TIL+ CK G
Sbjct: 407 ANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIR--PCSFTFTILLDGLCKGG 458
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T T LIK L +G VN+AL ++ + D +Y +IN +C++G+ A L+
Sbjct: 129 TITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVR 188
Query: 229 QMELPGFRCPPDVYTYTILISSYCKY 254
+++ G P+V Y +I + CKY
Sbjct: 189 KID--GRLTKPNVEMYNTIIDALCKY 212
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
++GL+ EAL +M++ C P+ ++++INAL + +KA LL QM G
Sbjct: 491 KQGLLEEALTMLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQMICRGL 545
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+P+V YN +I+ALC+ ++A L +M G DV TYT LI +C
Sbjct: 196 KPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGI--SADVVTYTTLIYGFC 245
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+ +A F M PDV++Y ++IN C+ ++A L ++M P + TY
Sbjct: 320 LKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNM--VPGIVTY 377
Query: 245 TILISSYCKYG 255
+ LI CK G
Sbjct: 378 SSLIDGLCKSG 388
>gi|242041019|ref|XP_002467904.1| hypothetical protein SORBIDRAFT_01g036150 [Sorghum bicolor]
gi|241921758|gb|EER94902.1| hypothetical protein SORBIDRAFT_01g036150 [Sorghum bicolor]
Length = 558
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 155 LKEMSRRGNGELVTT--STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ EM RG V T + V CL K G V +A+ F M+ C P + +YN ++
Sbjct: 201 IDEMVARGFRPSVATFSAVVGCLCK----RGRVTKAMEVFDAMRALGCEPTIRSYNSLVG 256
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC VG +A LL +++ PD+YT+TI++ +CK G
Sbjct: 257 GLCYVGRLEEALDLLNKLKDSPMT--PDIYTFTIVLDGFCKVG 297
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+G + RG K + F + R G T + L+ L G + EAL ++K
Sbjct: 220 VGCLCKRGRVTKAMEVF---DAMRALGCEPTIRSYNSLVGGLCYVGRLEEALDLLNKLKD 276
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+Y + +V++ C+VG +A + + G P ++TY L++ +CK G
Sbjct: 277 SPMTPDIYTFTIVLDGFCKVGRTEEATAIFH--DAIGMGLSPTIFTYNALLNGHCKEG 332
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T ++ + G EA A F+ P ++ YN ++N C+ GN KA LL +M
Sbjct: 285 TFTIVLDGFCKVGRTEEATAIFHDAIGMGLSPTIFTYNALLNGHCKEGNPLKAFALLMEM 344
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
CPPD ++ I++++ + G
Sbjct: 345 CGNDAACPPDKISFGIVLTALLRAG 369
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+ + +T S ++ L G A+A F M PD ++ + LCR G ++
Sbjct: 140 DDDALTVSDYNDILSALARAGDHATAVALFRAMP---VAPDAQSFATAVQCLCRQGAPDE 196
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
A+ +++M GFR P V T++ ++ CK G T
Sbjct: 197 AKLAIDEMVARGFR--PSVATFSAVVGCLCKRGRVT 230
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
+ V CL + +G +EA M RP V ++ V+ LC+ G KA + +
Sbjct: 182 ATAVQCLCR----QGAPDEAKLAIDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVFD 237
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
M G C P + +Y L+ C G
Sbjct: 238 AMRALG--CEPTIRSYNSLVGGLCYVG 262
>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
Length = 375
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E TC E G+ G +K L EM RG V T V L+ + +EG ++EA+
Sbjct: 24 EATCAESGV----GQAMK----LLDEMGSRGCKPDVVTYNV--LVNGMCKEGRLDEAIKF 73
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
M + +P+V +N+++ ++C G + A LL +M G C P V T+ ILI+
Sbjct: 74 LNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKG--CSPSVVTFNILINFL 131
Query: 252 CKYGM 256
C+ G+
Sbjct: 132 CRKGL 136
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ E V +A+ M C+PDV YNV++N +C+ G ++A L M
Sbjct: 18 TYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSM 77
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
P + P+V T+ I++ S C G
Sbjct: 78 --PSYGSQPNVITHNIILRSMCSTG 100
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 150 GLW----DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
G W L EM R+G V T + LI L +GL+ A+ +M C P+
Sbjct: 100 GRWMDAEKLLTEMVRKGCSPSVVTFNI--LINFLCRKGLLGRAIDILEKMPTHGCTPNSL 157
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+YN +++ C+ ++A LE M G C PD+ TY ++++ CK G
Sbjct: 158 SYNPLLHGFCKEKKMDRAIQYLEIMVSRG--CYPDIVTYNTMLTALCKDG 205
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L EM RG G T + LI L EG V EA+ F+ ++ F +P+ + YN ++
Sbjct: 247 ELLHEM--RGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMF 304
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC+ ++A L M G C P +YTILI G+
Sbjct: 305 GLCKAQQTDRAIDFLAYMISKG--CKPTEVSYTILIEGIANEGL 346
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+L+ M RG ++VT +T ++ L ++G V+ A+ ++ C P + YN VI+
Sbjct: 178 YLEIMVSRGCYPDIVTYNT---MLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVID 234
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L +VG ++A LL +M G + PDV TY+ LI+ + G
Sbjct: 235 GLSKVGKTDQAVELLHEMRGKGLK--PDVITYSSLIAGLSREG 275
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
R + C PDV Y ++I A C +A LL++M G C PDV TY +L++ CK
Sbjct: 6 RQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRG--CKPDVVTYNVLVNGMCK 63
Query: 254 YG 255
G
Sbjct: 64 EG 65
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL M G+ V T + +++ + G +A M + C P V +N++IN
Sbjct: 73 FLNSMPSYGSQPNVITHNI--ILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINF 130
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LCR G +A +LE+M P C P+ +Y L+ +CK
Sbjct: 131 LCRKGLLGRAIDILEKM--PTHGCTPNSLSYNPLLHGFCK 168
>gi|255558584|ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540536|gb|EEF42103.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 439
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 6/139 (4%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F+ W E+ H+ H+ M A+ + +WD + M R+ ++ T
Sbjct: 39 AYRFFEWAEKQLHYTHSVRAYHTMIESLAKIRQYQIMWDLINAMKRK---RMLNVETFCI 95
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++ + EA+ TF M+++ P++ A+N + +ALC+ N KA+ E +
Sbjct: 96 IMRKYARAQKLEEAVYTFNVMEKYDVPPNLAAFNGLFSALCKSKNVRKAQ---EIFDSSK 152
Query: 235 FRCPPDVYTYTILISSYCK 253
R PD TYTIL+ + K
Sbjct: 153 DRFVPDSKTYTILLEGWGK 171
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 34/153 (22%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
VT M + + V D +KEM T+ + LI G E + +A+ TF
Sbjct: 195 VTYGIMVDILCKAGRVDEALDIVKEMDLTICKP--TSFIYSVLIHTYGIENRIEDAVDTF 252
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR---------------- 236
M++ + DV AYN +I A C+V F +L +M+ G +
Sbjct: 253 LGMEKNGVKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSRTLNIILNNLIAR 312
Query: 237 ----------------CPPDVYTYTILISSYCK 253
C PD TYT++I +C+
Sbjct: 313 GETDEAFRVFRRMIKVCEPDADTYTMMIKMFCE 345
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
+ T T L++ G+ + +A F M C PD+ Y ++++ LC+ G ++A +++
Sbjct: 159 SKTYTILLEGWGKTPNLPKAREIFREMVDVGCSPDIVTYGIMVDILCKAGRVDEALDIVK 218
Query: 229 QMELPGFRCPPDVYTYTILISSY 251
+M+L C P + Y++LI +Y
Sbjct: 219 EMDLT--ICKPTSFIYSVLIHTY 239
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T +IK+ E + AL + MK+ P ++ ++V+IN LC G+ + A +LE
Sbjct: 333 ADTYTMMIKMFCERNELEMALKVWKYMKKKHFVPSMHTFSVLINGLCEEGDVSHACVMLE 392
Query: 229 QMELPGFR 236
M G R
Sbjct: 393 DMIEKGIR 400
>gi|297599556|ref|NP_001047351.2| Os02g0601600 [Oryza sativa Japonica Group]
gi|255671066|dbj|BAF09265.2| Os02g0601600 [Oryza sativa Japonica Group]
Length = 466
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 39/173 (22%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F+ W + + H C M + + + +W+ L +M RG LVT TV
Sbjct: 65 ALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQMWELLSDMHGRG---LVTVETVAK 121
Query: 175 LIKVLGEEGLVNEALATFYRMKQFR---------------CR------------------ 201
I+ L + + F +++ C+
Sbjct: 122 SIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLDVLCKERKIEVAREVFAVLSPHI 181
Query: 202 -PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y +N+ ++ C + ++A + +E+M+ GF PP V TYT ++ +YCK
Sbjct: 182 PPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGF--PPSVITYTTVLEAYCK 232
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + N + +++ L M +G V T T+ ++ L + EAL+ +RMK C
Sbjct: 229 AYCKQRNFRRVYEVLDSMGSQGCHPNVITYTM--IMTSLAKCERFEEALSVSHRMKSSGC 286
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD YN +IN L + G+ +A + ++E+P ++ TY +IS +C YG
Sbjct: 287 KPDTLFYNSLINLLGKSGHLFEASQVF-RVEMPMNGVSHNLATYNTMISIFCYYG 340
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+ T MK+ P V Y V+ A C+ NF + +L+ M G C P+V TY
Sbjct: 201 IDEAMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQG--CHPNVITY 258
Query: 245 TILISSYCK 253
T++++S K
Sbjct: 259 TMIMTSLAK 267
>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
Length = 1024
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 138 MGIVFARGNN--VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
+ IV RG K L+D + + G T T LI+ +V+E F M
Sbjct: 278 LSIVLKRGRTSMAKQLFDEMLDT----YGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEM 333
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+F+C PDV YN +++ LCR G A +++ M P+V TYT LI YC
Sbjct: 334 SRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYC 390
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 29/221 (13%)
Query: 61 QSPRSIGRQTGFRHRTPLKQ-----RILKKE--ADNIANNVLVLGPAAYRNPQKVTLGI- 112
Q P I G + T K+ R++ E + + +++ L P+ + TL +
Sbjct: 139 QQPIKITPNEGLKAATKTKRSQAMARLINTEPWSHELQSSLAELAPSLSKTTVLQTLQLI 198
Query: 113 ---NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL--- 166
KA F+ WVE F HNE + M + R N+ +F+ + ++ G
Sbjct: 199 RTPAKALHFFRWVEAK-GFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAESIK 257
Query: 167 ---------VTTSTVT--CLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINAL 214
V+ S VT L+ ++ + G + A F M + PD Y +N++I
Sbjct: 258 VFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGF 317
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C ++ + ++M F+C PDV TY L+ C+ G
Sbjct: 318 CMNSMVDEGFWFFKEMSR--FKCDPDVVTYNTLVDGLCRAG 356
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 162 GNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
G+G + T T+ LIK G + EA + F +M + R +PD Y+V++ +LC+ G+F
Sbjct: 442 GDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDF 501
Query: 221 NKARFLLEQME-----LPGFRCPPDVYTYTILISSYCKYG 255
+A +++ L C P V Y + C G
Sbjct: 502 RRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNG 541
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R VK + +K M ++ T T LI+ + + EAL+ M +
Sbjct: 352 LCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLK 411
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ YN +I LC +K + +LE M G PD T LI ++C G
Sbjct: 412 PNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFI-PDTCTLNTLIKAHCTMG 464
>gi|449436014|ref|XP_004135789.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
mitochondrial-like [Cucumis sativus]
Length = 460
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ LG+ G ++E + MK+ R +PDV YN+++N LC+ G A +L +M++ G
Sbjct: 297 LMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLVKMQVGG 356
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+ TY ++I YC G
Sbjct: 357 --CDPNAATYRMMIDGYCNAG 375
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI+ G+ LV + + F++M F C + ++NV++N L F+KA + +Q
Sbjct: 122 LIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSKASEIFQQAYEMD 181
Query: 235 FRCPPDVYTYTILISSYCKYG 255
FR P+ +Y I+I + K G
Sbjct: 182 FR--PNSVSYNIMIKGWIKKG 200
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ N+ + L EM +R V T + L+ L +EG V +A +M+ C
Sbjct: 301 LGKTGNIDEMESLLNEMKKRRLKPDVVTYNI--LVNYLCKEGKVGDAYKVLVKMQVGGCD 358
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+ Y ++I+ C G+F+ A +L M + G P + T+ L+ K
Sbjct: 359 PNAATYRMMIDGYCNAGDFDGAMKILNAMLMSGHY--PHLKTFASLVVGLLK 408
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 13/122 (10%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT----CLIKVLGEEGLVNEALATFY 193
+G++ +G L F K M+ +G+ T + C I G EA +
Sbjct: 228 LGVLCRKGEMDTALCLF-KNMTEKGHHPNAVTYALLMEGWCFI------GKYKEAKKLMF 280
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
M+ C+ Y V++ L + GN ++ LL +M+ R PDV TY IL++ CK
Sbjct: 281 DMEFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLNEMKKR--RLKPDVVTYNILVNYLCK 338
Query: 254 YG 255
G
Sbjct: 339 EG 340
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK ++G +A F M + +P V YN + LCR G + A L + M G
Sbjct: 192 MIKGWIKKGGWEQACNLFDEMLEKGVQPSVVTYNSFLGVLCRKGEMDTALCLFKNMTEKG 251
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+ TY +L+ +C G
Sbjct: 252 HH--PNAVTYALLMEGWCFIG 270
>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Brachypodium distachyon]
Length = 496
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV---TCLIKVLGEEGLVNEALATFYRMKQF 198
F R ++ W+F +M +RG+ + V T +I LG G +++A F M +
Sbjct: 249 FFRAGQLQHAWNFFLQMKKRGSKDENCKPDVVSYTTIIHGLGVAGQLDKARKLFDEMSKE 308
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P + YN +I +C+ GN A + + M + P+V TYT+LI C G
Sbjct: 309 GCPPTIATYNALIQVICKKGNVEDAVTVFDDMIRKDY--IPNVVTYTVLIRGLCHVG 363
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 145 GNNVKGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
G V G D EMS+ G T +T LI+V+ ++G V +A+ F M +
Sbjct: 288 GLGVAGQLDKARKLFDEMSKEGCPP--TIATYNALIQVICKKGNVEDAVTVFDDMIRKDY 345
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
P+V Y V+I LC VG ++A L+E+M+ G C P V TY +LI
Sbjct: 346 IPNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEG--CEPVVQTYNVLI 391
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V + NV+ +M R+ V T TV LI+ L G ++ A+ RMK C
Sbjct: 323 VICKKGNVEDAVTVFDDMIRKDYIPNVVTYTV--LIRGLCHVGKIDRAMKLMERMKNEGC 380
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
P V YNV+I G +KA L E+M G C P+ TY I+IS+
Sbjct: 381 EPVVQTYNVLIRYSFEEGEMDKALHLFERMS-KGEECLPNQDTYNIVISA 429
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ LG+ ++A A+ R + R PDV YN + + CRV + ++A LL QM G
Sbjct: 176 LLDALGKSRHASKA-ASLVRALERRFPPDVVTYNTLADGWCRVKDTSRALDLLRQMAESG 234
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P TY +++ + + G
Sbjct: 235 I--APTKTTYNVILKGFFRAG 253
>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
Length = 1302
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + +T T ++ L E GLVN A+ F +M +P++ + +I+ LC+ G+ +A
Sbjct: 848 GFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQA 907
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+LE+M G++ P+VYT+T LI CK G
Sbjct: 908 FEMLEEMVRNGWK--PNVYTHTALIDGLCKRG 937
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I +E +N A F RMK+ P+V Y +IN C+ G+F +A L+ M
Sbjct: 961 TYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLM 1020
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
GF P++YTY I S CK
Sbjct: 1021 GDEGFM--PNIYTYNAAIDSLCK 1041
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRC 200
+ ++K ++ L+EM R NG T T LI L + G +A F ++ +
Sbjct: 898 LCKKGSIKQAFEMLEEMVR--NGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTY 955
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P+V+ Y +I C+ N+A L +M+ G P+V TYT LI+ +CK G
Sbjct: 956 KPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLF--PNVNTYTTLINGHCKAG 1008
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T T +I +EG ++ AL F+ MK+ C PD + Y +I+ LC+ ++A
Sbjct: 1129 GLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEA 1188
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
L E M G PP+V T L YCK
Sbjct: 1189 CKLYEAMIDRGL-SPPEV-TRVTLAYEYCK 1216
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQME 231
T LI L ++G + +A M + +P+VY + +I+ LC+ G KA R L+ +
Sbjct: 892 TSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVR 951
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
++ P+V+TYT +I YCK
Sbjct: 952 SDTYK--PNVHTYTSMIGGYCK 971
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ ++ +N+ALA F RM + D+ N++I A CR ++ L + +
Sbjct: 1066 TYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLV 1125
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P TYT +IS YCK G
Sbjct: 1126 VSLGL--IPTKETYTSMISCYCKEG 1148
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
M + G ++ T+ C++++ E GL+ A F M PD +Y +++ R
Sbjct: 772 MDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRD 831
Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
G +A L M GF PD T T+++++ C+ G+
Sbjct: 832 GKIQEADRWLTGMIQRGF--IPDNATCTLILTALCENGL 868
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 22/81 (27%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ ++G+EG + P++Y YN I++LC+ +A LL +
Sbjct: 1016 LMNLMGDEGFM----------------PNIYTYNAAIDSLCKKSRAPEAYELLNK----A 1055
Query: 235 FRC--PPDVYTYTILISSYCK 253
F C D TYTILI CK
Sbjct: 1056 FSCGLEADGVTYTILIQEQCK 1076
>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +IK L + G AL +M++ C+PDV AYN VI++LC+ N+A + +M
Sbjct: 178 TYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEM 237
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PP+V TY+ ++ +C G
Sbjct: 238 VDQGI--PPNVVTYSSILHGFCNLG 260
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G + T T T L+ L +EG++ EA F M + PD Y Y+ +++ C +
Sbjct: 274 GRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMD 333
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+A+ L + M GF P V Y ILI+ +CK
Sbjct: 334 EAQKLFDIMVGKGF--APSVRVYNILINGHCK 363
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
KEM G L + T + L+ L + G ++EA M++ + P + YN++I
Sbjct: 408 LFKEMCSYG--LLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQG 465
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
+C G AR L + + G + P V TYT++IS K G+
Sbjct: 466 MCNFGKLEAARELFSNLFVKGIQ--PSVVTYTVMISGLLKEGLS 507
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
LK+M +G ++V +TV I L ++ NEA+ F M P+V Y+ +++
Sbjct: 198 LLKKMEEKGCKPDVVAYNTV---IDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILH 254
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
C +G N+A L +QM G P+ T+TIL+ CK GM
Sbjct: 255 GFCNLGQLNEATSLFKQM--IGRNVMPNTVTFTILVDGLCKEGM 296
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L+ L + + +A+ F + + P + Y +I LC++G+ A LL
Sbjct: 140 THVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLL 199
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++ME G C PDV Y +I S CK
Sbjct: 200 KKMEEKG--CKPDVVAYNTVIDSLCK 223
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +NEA + F +M P+ + ++++ LC+ G +AR + E M G PD Y
Sbjct: 260 GQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVE--PDAY 317
Query: 243 TYTILISSYC 252
TY+ L+ YC
Sbjct: 318 TYSALMDGYC 327
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I L +EGL NEA F +M C P+ YNV I R G+ + A L+E+M
Sbjct: 493 TYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEM 552
Query: 231 ELPGFRCPPDVYTYTILIS 249
GF D T+ +L+
Sbjct: 553 VGRGFS--ADSSTFQMLLD 569
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T + L++ + G A F M + PD Y+++++ LC+ G+ ++A LL+
Sbjct: 386 TVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLK 445
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
M+ + P + Y ILI C +G
Sbjct: 446 AMQES--KIEPHICIYNILIQGMCNFG 470
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V +A+A+F ++ R P V +N ++ +L + +++ L +QM+L R P+VYT
Sbjct: 50 VADAVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIR--PNVYTL 107
Query: 245 TILISSYC 252
TILI+ C
Sbjct: 108 TILINCLC 115
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+NEA M PD Y+ ++ C+ G A+ L ++M G PD TY
Sbjct: 367 LNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLL--PDSITY 424
Query: 245 TILISSYCKYG 255
+IL+ CK+G
Sbjct: 425 SILLDGLCKHG 435
>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial [Vitis vinifera]
Length = 531
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 70/137 (51%), Gaps = 5/137 (3%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F+ W E+ F ++ + + K +W+ + +M +G L+T T
Sbjct: 128 ALSFFRWAEKQKGFKYSTENYNALIEALGKIKQFKMIWNLVNDMRSKG---LLTQETFAL 184
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+ + V EA+ TF +M++F +P + +N +++ALC+ + +A+ + ++M+
Sbjct: 185 ISRRYARARKVKEAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRK 244
Query: 235 FRCPPDVYTYTILISSY 251
FR PD+ +YTIL+ +
Sbjct: 245 FR--PDIKSYTILLEGW 259
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+AR VK + ++M + G ++ S L+ L + V A F +MK + R
Sbjct: 189 YARARKVKEAVETFEKMEKFGLQPVL--SDFNRLLDALCKSRHVERAQEVFDKMKDRKFR 246
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD+ +Y +++ + N + + +M+ GF PD TY ILI+++CK
Sbjct: 247 PDIKSYTILLEGWGQEQNLLRLDEVYREMKDEGFE--PDAVTYGILINAHCK 296
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+ A+ F++M+ +C P + Y +IN L +A E+ + GF P+ TY
Sbjct: 301 DAAVELFHKMEANKCMPTPHIYCTLINGLGSERRLTEALQFFERSKASGF--TPEAPTYN 358
Query: 246 ILISSYCK 253
++ SYC+
Sbjct: 359 AVVGSYCQ 366
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI LG E + EAL F R K P+ YN V+ + C+ + A ++++M G
Sbjct: 325 LINGLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIVDEMRKCG 384
Query: 235 FRCPPDVYTYTILISSYCK 253
P TY I++ K
Sbjct: 385 V--GPQTRTYDIILHHLIK 401
>gi|359474405|ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g47360-like [Vitis vinifera]
Length = 638
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +IK G + +A F MK C P+V Y V+++ +CR G+ +A LL +M
Sbjct: 197 TYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEM 256
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E C P+V TYT +I S C+ G
Sbjct: 257 EKESGDCSPNVVTYTSMIQSCCEKG 281
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 4/138 (2%)
Query: 118 FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK 177
F+ W ++ H+ + +F N + + D ++ + R G +V+ T ++
Sbjct: 76 FFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIE--AYRVEGTVVSVKTFNVVLH 133
Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
+L E L +EAL +M +F R D AYN VI C G+ + A L+++M L
Sbjct: 134 LLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAAGLMKEMGLIDLY- 192
Query: 238 PPDVYTYTILISSYCKYG 255
P++ TY +I +C G
Sbjct: 193 -PNMITYVTMIKGFCNVG 209
>gi|297807861|ref|XP_002871814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317651|gb|EFH48073.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 459
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 102 YRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRR 161
+R + + N + F++W + + +E+ A + +W LK+M
Sbjct: 81 FRVLRATSRSANDSLRFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDL 140
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNF 220
++ T+ +I+ G+ G V++A+ F + K C+ V YN +++ALC V F
Sbjct: 141 SLD--ISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNALLHALCDVKMF 198
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ A L+ +M G + PD TY IL++ +C G
Sbjct: 199 HGAYALIRRMIRKGLK--PDKRTYAILVNGWCSAG 231
>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
Length = 814
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G+G T LIK G++++A+ F M+ +PDV Y VI ALCR+G +
Sbjct: 387 GDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD 446
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A QM G PD Y Y LI +C +G
Sbjct: 447 DAMEKFNQMIDQGV--APDKYAYHCLIQGFCTHG 478
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 175 LIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L+K E +EAL +R + C PDV++Y++++ +LC G +A LL M
Sbjct: 152 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 211
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G C PDV Y+ +I + K G
Sbjct: 212 GAVCSPDVVAYSTVIDGFFKEG 233
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL++M +G L T LI G EA+ F M++ PDV ++++ +
Sbjct: 276 FLRQMVNKG--VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGS 333
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G +AR + + M + G P+V++YTI+++ Y G
Sbjct: 334 LCKYGKIKEARDVFDTMAMKGQN--PNVFSYTIMLNGYATKG 373
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 153 DFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
D L+ M+ G + ++V STV I +EG VN+A F M Q PD Y+
Sbjct: 203 DLLRMMAEGGAVCSPDVVAYSTV---IDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSS 259
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V++ALC+ +KA L QM G P+ +TY LI Y G
Sbjct: 260 VVHALCKARAMDKAEAFLRQMVNKGVL--PNNWTYNNLIYGYSSTG 303
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 145 GNNVKGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
G + G W KEM R + L T++ L+ L + G + EA F M
Sbjct: 298 GYSSTGQWKEAVRVFKEMRR--HSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 355
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P+V++Y +++N G L + M G PD+YT+ +LI +Y GM
Sbjct: 356 NPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGI--APDIYTFNVLIKAYANCGM 409
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT TV I L G +++A+ F +M PD YAY+ +I C G+ KA+
Sbjct: 428 DVVTYRTV---IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAK 484
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L+ ++ G D+ ++ +I++ CK G
Sbjct: 485 ELISEIMNNGMHL--DIVFFSSIINNLCKLG 513
>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 721
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EM+ +G T T T +I L ++ EA+ F MK+ + P YNV+I CR
Sbjct: 322 EMTAKGISP--NTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCR 379
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
GN ++A LL++M GF PD YTY LIS C G
Sbjct: 380 SGNISEAFHLLDEMVGKGF--VPDTYTYRPLISGLCSVG 416
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
KEM +G T + LI G ++ A+ +M + VY YN +IN
Sbjct: 214 LFKEMGEKG--LCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLING 271
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C++GN + A++ ++M G P V TYT LIS YC G
Sbjct: 272 YCKLGNASAAKYYFDEMIDKGL--TPTVVTYTSLISGYCNEG 311
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
N+ L F + +PD+Y Y+ V+ +LC + +FNKA+ ++ ME +C + Y
Sbjct: 113 NDVLLLFDDIVSANVQPDIYIYSAVVRSLCELKDFNKAKEMIHWMEFN--QCKLSIVVYN 170
Query: 246 ILISSYCK 253
+LI CK
Sbjct: 171 VLIHGLCK 178
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRCR 201
AR ++ + L+ LKEM G L + + T +I + G + EA + M C
Sbjct: 483 AREHDTRALFGLLKEMHNHG---LRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCL 539
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQ 229
P+V Y +IN LC+ G +KA L ++
Sbjct: 540 PNVVTYTALINGLCKAGLMDKAELLSKE 567
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
M RPD Y +I+ + GN +A L + M G C P+V TYT LI+ CK
Sbjct: 497 EMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEG--CLPNVVTYTALINGLCK 554
Query: 254 YGM 256
G+
Sbjct: 555 AGL 557
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 26/149 (17%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
NKA E HW+E F +++ ++ + +W+ L+
Sbjct: 148 NKAKEMIHWME----FNQCKLSIVVYNVLIHGLCKSRRIWEALE--------------IK 189
Query: 173 TCLIK------VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
CL++ V+ G NEA F M + + Y+++I++ CR G + A
Sbjct: 190 NCLMQKGLEANVVTYYGKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGF 249
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
L++M VY Y LI+ YCK G
Sbjct: 250 LDKMTKASIEFT--VYPYNSLINGYCKLG 276
>gi|224072823|ref|XP_002303899.1| predicted protein [Populus trichocarpa]
gi|222841331|gb|EEE78878.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T L+ LG+ G ++EA + + MK+ +PDV YN++IN LC+ G A +L
Sbjct: 272 TVVNFGVLMSDLGKRGKIDEAKSVLHEMKKRHMKPDVVTYNILINYLCKEGRAADAYEVL 331
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M++ G C + TY +L+ +C+ G
Sbjct: 332 FEMQVGG--CEANAATYRMLVDGFCRVG 357
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK E+G +A F M + + P V YN +I LCR G +KA+ LLE M G
Sbjct: 174 MIKGWLEKGEWEQASKVFDEMLERKVEPSVVTYNSLIGYLCRNGELDKAKGLLEDMIKKG 233
Query: 235 FRCPPDVYTYTILISSYCKYG 255
R P+ T+ +L+ C G
Sbjct: 234 KR--PNAITFALLMEGSCLIG 252
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 146 NNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
+ KGL + + + +R N +CLI G NEA + M+ C+P V
Sbjct: 220 DKAKGLLEDMIKKGKRPNAITFALLMEGSCLI------GEHNEAKKMMFDMEYRGCKPTV 273
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ V+++ L + G ++A+ +L +M+ + PDV TY ILI+ CK G
Sbjct: 274 VNFGVLMSDLGKRGKIDEAKSVLHEMKKRHMK--PDVVTYNILINYLCKEG 322
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L EM +R V T + LI L +EG +A + M+ C + Y ++++
Sbjct: 296 LHEMKKRHMKPDVVTYNI--LINYLCKEGRAADAYEVLFEMQVGGCEANAATYRMLVDGF 353
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CRVG+F +L M G P V T+ L+ K G
Sbjct: 354 CRVGDFEGGLKVLNAMLTSGH--FPRVETFRSLVVGLVKSG 392
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 141 VFARGNNVKGLWD-----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
V +G KG W+ F + + R+ +VT ++ LI L G +++A M
Sbjct: 173 VMIKGWLEKGEWEQASKVFDEMLERKVEPSVVTYNS---LIGYLCRNGELDKAKGLLEDM 229
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ RP+ + +++ C +G N+A+ ++ ME G C P V + +L+S K G
Sbjct: 230 IKKGKRPNAITFALLMEGSCLIGEHNEAKKMMFDMEYRG--CKPTVVNFGVLMSDLGKRG 287
>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 418
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + G V+ A+ + +M PD+ YN +I LCR G+ +AR L+++M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEM 302
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G + PD TYT LI CK G
Sbjct: 303 SMKGLK--PDKITYTTLIDGXCKEG 325
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++K D + EMS +G T T LI +EG + A RM Q +
Sbjct: 286 LCRKGDLKQARDLIDEMSMKGLKP--DKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQ 343
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D Y +I+ LC+ G + A +L +M G + PD TYT++I+ +CK G
Sbjct: 344 LDDVGYTALISGLCQEGRYLDAEKVLREMLSVGLK--PDTITYTMIINEFCKKG 395
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
++G + A + F + ++ RP V ++N ++N R+G+ ++ L M G + PD
Sbjct: 148 KDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQ--PD 205
Query: 241 VYTYTILISSYCK 253
VYTY++LI+ CK
Sbjct: 206 VYTYSVLINGLCK 218
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++E M +PDVY Y+V+IN LC+ + A L ++M G P+
Sbjct: 185 GDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGL--VPNGV 242
Query: 243 TYTILISSYCKYG 255
T+T LI +CK G
Sbjct: 243 TFTTLIDGHCKNG 255
>gi|224576655|gb|ACN57001.1| At1g03560-like protein [Capsella grandiflora]
Length = 207
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 84 RFNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 143
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 144 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 172
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +NE A F M + +P+V Y V+I+ + G+ A LL +M GF+ PDV
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK--PDVV 58
Query: 243 TYTILISSYCKYG 255
TY+++++ CK G
Sbjct: 59 TYSVVVNGLCKNG 71
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 39/133 (29%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC-- 215
M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+N LC
Sbjct: 13 MIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKN 70
Query: 216 ---------------------------------RVGNFNKARFLLEQMELPGFRCPPDVY 242
+ G ++A L E+M G C D Y
Sbjct: 71 GRVEEALDYFQTCRFNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG--CTRDSY 128
Query: 243 TYTILISSYCKYG 255
Y LI + K+G
Sbjct: 129 CYNALIDALTKHG 141
>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 482
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G L + +T LI++L ++ V A+ F M + P+ YN+VI LC VG +
Sbjct: 295 DGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQR 354
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A L+E+ME C P+V TY ILI +C G
Sbjct: 355 AMELMERMEDDD--CEPNVQTYNILIRYFCDAG 385
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ LKEM RG +TT + ++ G NEA F MK+ +C DV Y VI+
Sbjct: 217 EMLKEMVERGLTPNLTTYNI--MLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVIH 274
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
L VG +AR + QM G P V T+ LI CK
Sbjct: 275 GLGVVGEIKRARNVFNQMVKDGVL--PSVATFNALIQILCK 313
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + ++V+ +EM +RG + + T +I+ L G + A+ RM+ C
Sbjct: 310 ILCKKDSVENAILIFEEMVKRG--YVPNSITYNLVIRGLCHVGEMQRAMELMERMEDDDC 367
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
P+V YN++I C G K L ++M C P++ TY ILI+S
Sbjct: 368 EPNVQTYNILIRYFCDAGEIEKGLDLFQKM--GNGDCLPNLDTYNILINS 415
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R W F EM +R + T T +I LG G + A F +M +
Sbjct: 241 YFRAGQTNEAWGFFLEMKKRKCD--IDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDGVL 298
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P V +N +I LC+ + A + E+M G+ P+ TY ++I C G
Sbjct: 299 PSVATFNALIQILCKKDSVENAILIFEEMVKRGY--VPNSITYNLVIRGLCHVG 350
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
MS G S+ ++ VL + V A F +K + + D +YN+++N C +
Sbjct: 151 MSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNLFKALKG-KFKADCVSYNIIVNGWCLI 209
Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
KA +L++M G P++ TY I+++ Y + G
Sbjct: 210 KRTPKALEMLKEMVERGL--TPNLTTYNIMLNGYFRAG 245
>gi|224122684|ref|XP_002318900.1| predicted protein [Populus trichocarpa]
gi|222859573|gb|EEE97120.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ +G +T T T LI + G+ AL F M+ +CRPD+ Y ++NA R G
Sbjct: 17 KNDGCQPSTDTYTLLINLHGKASQSYMALKLFNEMRSQKCRPDICTYTALVNAFAREGLC 76
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSY 251
KA + EQM+ PDVYTY L+ +Y
Sbjct: 77 EKAEEIFEQMQEDKLE--PDVYTYNALMEAY 105
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ F R+K C+P Y ++IN + A L +M +C PD+ TYT L
Sbjct: 9 AIEIFQRLKNDGCQPSTDTYTLLINLHGKASQSYMALKLFNEMR--SQKCRPDICTYTAL 66
Query: 248 ISSYCKYGM 256
++++ + G+
Sbjct: 67 VNAFAREGL 75
>gi|341605797|gb|AEK83001.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605799|gb|AEK83002.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605801|gb|AEK83003.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RFNGXAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 82
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 83 FK--PDVVTYSVVVNGLCKNG 101
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRFNGXAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 18 HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLIDGYAKSG 66
>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
[Arabidopsis thaliana]
Length = 602
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T+T LI L EG V++A+ RM + C+PD+ YN ++N +CR G+ + A +L
Sbjct: 158 TTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLR 217
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+ME + DV+TY+ +I S C+ G
Sbjct: 218 KMEERNVK--ADVFTYSTIIDSLCRDG 242
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R + +D L++M R ++ T ST+ I L +G ++ A++ F M+
Sbjct: 203 ICRSGDTSLAFDMLRKMEERNVKADVFTYSTI---IDSLCRDGCIDAAISLFKEMETKGI 259
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ V YN ++ LC+ G +N LL+ M P+V T+ +L+ + K G
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDM--VSREIVPNVITFNVLLDVFVKEG 312
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 142 FARGNNVKGLWD----FLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMK 196
RG G W+ LK+M R E+V T L+ V +EG + EA + M
Sbjct: 269 LVRGLCKAGKWNDGALLLKDMVSR---EIVPNVITFNVLLDVFVKEGKLQEANELYKEMI 325
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P++ YN +++ C ++A +L+ M +C PD+ T+T LI YC
Sbjct: 326 TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRN--KCSPDIVTFTSLIKGYC 379
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + +K + +EM +G L T L+ L + G + +AL F +++ +
Sbjct: 413 FCQSGKIKLAEELFQEMV--SHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 470
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ Y +I +C+ G A L + G + P+V TYT++IS CK G
Sbjct: 471 LGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVK--PNVMTYTVMISGLCKKG 522
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD +N +IN LC G +KA L+++M G C PD+ TY +++ C+ G
Sbjct: 155 EPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENG--CQPDMVTYNSIVNGICRSG 207
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I+ + + G V +A F + +P+V Y V+I+ LC+ G+ ++A LL +ME
Sbjct: 477 TTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 536
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G P+ TY LI ++ + G
Sbjct: 537 DGN--APNDCTYNTLIRAHLRDG 557
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
R + KEM +G + +S VT L++ L + G N+ M
Sbjct: 238 LCRDGCIDAAISLFKEMETKG----IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE 293
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P+V +NV+++ + G +A L ++M G P++ TY L+ YC
Sbjct: 294 IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGI--SPNIITYNTLMDGYC 344
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 122 VERFFHFFHNEVTCK-EMGIVF--------ARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
+E+ F + K ++GIV +G V+ W+ + +G V T TV
Sbjct: 454 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 513
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+I L ++G ++EA +M++ P+ YN +I A R G+ + L+E+M+
Sbjct: 514 --MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKS 571
Query: 233 PGF 235
GF
Sbjct: 572 CGF 574
>gi|440793601|gb|ELR14780.1| PPR repeat/pentatricopeptide repeat domain containing protein,
partial [Acanthamoeba castellanii str. Neff]
Length = 610
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
C + + + D + M+++G + +T L+ LG G V +A F
Sbjct: 86 CSALIALLGKLQRTDAALDLVTRMTQQGY--VPDVFVLTALVSALGRAGEVGKAQYFFNE 143
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+++ P +++YN +I A R G +K R +LE M+ G PDV TYT +I++ CK
Sbjct: 144 IQRLGMTPTLHSYNSMIMAFARAGRIDKVRDMLEVMKHKGIE--PDVRTYTEIINNSCKA 201
Query: 255 G 255
G
Sbjct: 202 G 202
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 15/147 (10%)
Query: 112 INKATEFYHWVERF-----FHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL 166
+ KA F++ ++R H +++ M + FAR + + D L+ M +G
Sbjct: 134 VGKAQYFFNEIQRLGMTPTLHSYNS------MIMAFARAGRIDKVRDMLEVMKHKGIEPD 187
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
V T T +I + G V EA TF M+ +PD+ Y+ +I VG+ KA+ L
Sbjct: 188 V--RTYTEIINNSCKAGRVAEAYQTFIEMQDVGVQPDLKVYSALIAGFSHVGDHLKAQQL 245
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCK 253
E+ME G + TY+ ++S +
Sbjct: 246 KEEMEALGLEA--SMITYSGMLSGLAR 270
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V A+ ++V+ L M R + ELV+ S+ LI + G V+ M++ +
Sbjct: 337 VCAKADDVEKGIRILDVM-RSHSPELVSASSYCVLIDTFAKAGRVSRGATLLAHMRKHKI 395
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PDV YNV I R ++KA + E M+ G R P T++ILI + G
Sbjct: 396 KPDVSIYNVFIEGAMRETGYSKALQVFELMKAEGVR--PSHTTFSILIDAAGHAG 448
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 136 KEMGIVFARGNNVKGLWDFLKE-MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
+ M + +G +V D LKE +SR G S LI +LG+ + AL R
Sbjct: 52 RRMQSLHDQGKDVGVALDALKEELSRAGQCHPFICS---ALIALLGKLQRTDAALDLVTR 108
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M Q PDV+ +++AL R G KA++ +++ G P +++Y +I ++ +
Sbjct: 109 MTQQGYVPDVFVLTALVSALGRAGEVGKAQYFFNEIQRLGM--TPTLHSYNSMIMAFARA 166
Query: 255 G 255
G
Sbjct: 167 G 167
>gi|3258568|gb|AAC24378.1| Unknown protein [Arabidopsis thaliana]
Length = 691
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Query: 118 FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL-VTTSTVTCLI 176
F+ WV F H E + M R N+ +FL + RR NG + + LI
Sbjct: 87 FFDWVSNK-GFSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLI 145
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
+ G GL E++ F MKQ P V +N +++ L + G A L ++M +
Sbjct: 146 RSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMR-RTYG 204
Query: 237 CPPDVYTYTILISSYCKYGM 256
PD YT+ LI+ +CK M
Sbjct: 205 VTPDSYTFNTLINGFCKNSM 224
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 148 VKGL-----WDFLKEMSRRGNGELVTTSTVTC----LIKVLGEEGLVNEALATFYRMKQF 198
+KGL +D +K++ GN T + C LIK + G ++ A+ F M
Sbjct: 304 IKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNM 363
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQM-----ELPGFRCPPDVYTYTILISSYCK 253
+ PD +Y+V+I LC F++A L ++ L C P Y + C
Sbjct: 364 KLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCA 423
Query: 254 YG 255
G
Sbjct: 424 NG 425
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
E L NE + + C+P AYN + LC G +A + Q+ G + PP
Sbjct: 389 ETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQDPP-- 446
Query: 242 YTYTILISSYCKYG 255
+Y LI+ +C+ G
Sbjct: 447 -SYKTLITGHCREG 459
>gi|341605693|gb|AEK82949.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RFNGXAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 82
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 83 FK--PDVVTYSVVVNGLCKNG 101
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRFNGXAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 18 HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLIDGYAKSG 66
>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 36/118 (30%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL-------------------- 214
+I + G+ GL EA+ F RM+ + C+PD A++VVI++L
Sbjct: 152 MIDLAGKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRF 211
Query: 215 --------------CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
CR GN ++A + +M++ G + P+VYTY+I+I + C+ G T
Sbjct: 212 EPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQ--PNVYTYSIVIDALCRSGQIT 267
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 84/235 (35%), Gaps = 59/235 (25%)
Query: 64 RSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLG--PAAYRNPQKVTLGINKATEFYHW 121
R I + G RH P Q + N A N+ G P Y + A E H
Sbjct: 112 RVIEKCGGVRHGIPFPQTL---AFFNWATNLEEFGHSPEPYMEMIDLAGKAGLAAEAVHA 168
Query: 122 VERFFHFFHNEVTCKEMGIVFA----------RGNNVKGLWDFLKEMSRRGNGELVTTST 171
R + CK I F+ R + +D LK+ R ++V
Sbjct: 169 FNRM-----EDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKD---RFEPDVVV--- 217
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM- 230
T L+ G ++EA F MK +P+VY Y++VI+ALCR G +A + +M
Sbjct: 218 YTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMI 277
Query: 231 --------------------------------ELPGFRCPPDVYTYTILISSYCK 253
++ CPPD TY LI S+C+
Sbjct: 278 DVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCR 332
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R +N++ L + + N + S+ + + + G VN A F +MK +CRP+
Sbjct: 332 RDDNLEEAVKILNSVKKGCN---LNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPN 388
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN+++ + + L ++M+ P+ TY +LIS++C G
Sbjct: 389 TVTYNILMRMFADKKSTDMVLKLRKEMDENEIE--PNANTYRVLISTFCGIG 438
>gi|296084709|emb|CBI25851.3| unnamed protein product [Vitis vinifera]
Length = 528
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +IK G + +A F MK C P+V Y V+++ +CR G+ +A LL +M
Sbjct: 203 TYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEM 262
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E C P+V TYT +I S C+ G
Sbjct: 263 EKESGDCSPNVVTYTSMIQSCCEKG 287
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 4/138 (2%)
Query: 118 FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK 177
F+ W ++ H+ + +F N + + D ++ + R G +V+ T ++
Sbjct: 82 FFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIE--AYRVEGTVVSVKTFNVVLH 139
Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
+L E L +EAL +M +F R D AYN VI C G+ + A L+++M L
Sbjct: 140 LLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAAGLMKEMGLIDLY- 198
Query: 238 PPDVYTYTILISSYCKYG 255
P++ TY +I +C G
Sbjct: 199 -PNMITYVTMIKGFCNVG 215
>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
Length = 502
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G L +T+T +I+VL ++ V A+ F M + P++ YNVVI L GN +
Sbjct: 315 GEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMD 374
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
KA +E+M+ G C P+V TY + I +C G
Sbjct: 375 KAMEFIERMKTDG--CEPNVQTYNVAIRYFCDAG 406
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V + ++V+ +EM ++G +TT V +I+ L G +++A+ RMK C
Sbjct: 331 VLCKKDSVENAVLMFEEMVKKGYVPNLTTYNV--VIRGLFHAGNMDKAMEFIERMKTDGC 388
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
P+V YNV I C G+ K + E+M G P++ TY +LIS+
Sbjct: 389 EPNVQTYNVAIRYFCDAGDVEKGLSMFEKM---GQGSLPNLDTYNVLISA 435
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ LKEM RG +TT + L+K G + EA F +MK+ DV Y +++
Sbjct: 238 EVLKEMVERGLTPTITTYNI--LLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVH 295
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
VG +AR + +M G P TY +I CK
Sbjct: 296 GFGVVGEIKRARKVFNEMVGEGIL--PSTATYNAMIQVLCK 334
>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Glycine max]
Length = 879
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 4/141 (2%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F+ W++R F+H+ T M + R + L++M + G V T
Sbjct: 366 AVGFFCWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVV--TYNR 423
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G + EAL F +M++ C PD Y +I+ + G + A + E+M+ G
Sbjct: 424 LIHSYGRANYLREALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVG 483
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD +TY+++I+ K G
Sbjct: 484 LS--PDTFTYSVMINCLGKSG 502
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T + +I LG+ G ++ A F M C P++ YN++I + N+ A L
Sbjct: 488 TFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALELYR 547
Query: 229 QMELPGFRCPPDVYTYTILIS--SYCKY 254
M+ GF+ PD TY+I++ +C Y
Sbjct: 548 DMQNAGFK--PDKVTYSIVMEVLGHCGY 573
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 143 ARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
A+ N + + ++M G + VT S V ++VLG G + EA A F+ M+Q
Sbjct: 534 AKARNYQTALELYRDMQNAGFKPDKVTYSIV---MEVLGHCGYLEEAEAVFFEMRQNHWV 590
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y ++++ + GN KA M G P+V T L+S++ +
Sbjct: 591 PDEPVYGLLVDLWGKAGNVEKAWEWYHTMLRAGLL--PNVPTCNSLLSAFLR 640
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
++ +R +G LV + V +I + + LVNEA F M PDV Y+ +I+
Sbjct: 211 DLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGF 270
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C +G N A L +M L + PDVYT+ IL++++CK G
Sbjct: 271 CILGKLNDAIDLFNKMILENIK--PDVYTFNILVNAFCKDG 309
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 152 WDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+D EM +G + ++VT S + +LG+ +N+A+ F +M +PDVY +N++
Sbjct: 245 FDLFSEMISKGISPDVVTYSALISGFCILGK---LNDAIDLFNKMILENIKPDVYTFNIL 301
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+NA C+ G + + + + M G + P+ TY L+ YC
Sbjct: 302 VNAFCKDGKMKEGKTVFDMMMKQGIK--PNFVTYNSLMDGYC 341
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ KEM R+ + T + LI L + G ++ AL +M P + YN +++
Sbjct: 386 NLFKEMHRKN--IIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILD 443
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
ALC++ +KA LL +++ G + P++YTY+ILI C+ G
Sbjct: 444 ALCKIHQVDKAIALLTKLKDKGIQ--PNMYTYSILIKGLCQSG 484
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T ++ L + V++A+A ++K +P++Y Y+++I LC+ G AR +
Sbjct: 434 TIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVF 493
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
E + + G D TYTI+I +C G+
Sbjct: 494 EGLLVKGHNLNVD--TYTIMIQGFCVEGL 520
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
CL+K VN+A + F M Q PD+ +Y+++IN C++ F++A L ++M
Sbjct: 341 CLVKE------VNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRK 394
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
PDV TY+ LI K G
Sbjct: 395 NI--IPDVVTYSSLIDGLSKSG 414
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G AL R+ +P+V YN +I+++C+V N+A L +M G
Sbjct: 196 LIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKG 255
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PDV TY+ LIS +C G
Sbjct: 256 IS--PDVVTYSALISGFCILG 274
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ ++G + E F M + +P+ YN +++ C V NKA+ + M
Sbjct: 297 TFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTM 356
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G PD+ +Y+I+I+ +CK
Sbjct: 357 AQGGVN--PDIQSYSIMINGFCK 377
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T +I+ EGL NEALA +M+ C PD Y ++I +L + + A
Sbjct: 500 GHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMA 559
Query: 224 RFLLEQMELPGFR 236
LL +M G R
Sbjct: 560 EKLLREMIARGVR 572
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LIK L + G + +A F + +V Y ++I C G FN+A LL +M
Sbjct: 472 TYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKM 531
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E G C PD TY I+I S K
Sbjct: 532 EDNG--CIPDAKTYEIIILSLFK 552
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+EA+ F M + PDV Y+ +I+ L + G + A L++QM G PP + TY
Sbjct: 382 DEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRG--VPPTIRTYN 439
Query: 246 ILISSYCK 253
++ + CK
Sbjct: 440 SILDALCK 447
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T T LIK L +G + +A ++ D +Y +I+ LC+VG A
Sbjct: 150 GYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAA 209
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LL++++ G P+V Y +I S CK
Sbjct: 210 LDLLQRVD--GNLVQPNVVMYNTIIDSMCK 237
>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
Length = 802
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 85 KEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIV--- 141
K D+IA NV+ G + G+ KA + E N C+ I+
Sbjct: 435 KHTDSIAPNVVTYGA--------LIDGLCKAHKVVDAQELLDAMLSN--GCEPNHIIYDA 484
Query: 142 ----FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
F + + + MS+ G L T T T LI + ++ ++ A+ +M +
Sbjct: 485 LIDGFCKVGKIDNAQEVFLRMSK--CGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVE 542
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+V Y +I+ LCR+G KA LL ME G C P+V TYT LI K G
Sbjct: 543 SSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKG--CSPNVVTYTALIDGLGKSG 598
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G + TST + +I L E V +A F MK PDVY Y ++I++ C+ G
Sbjct: 281 GKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIE 340
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+AR ++M G C +V TYT L+ +Y K
Sbjct: 341 QARSWFDEMRSIG--CSANVVTYTALLHAYLK 370
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD Y+ VI LC KA L ++M+ G PDVYTYTILI S+CK G+
Sbjct: 286 PDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVN--PDVYTYTILIDSFCKAGL 338
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT M R + L M +G V T T LI LG+ G V+ +L
Sbjct: 548 NVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTA--LIDGLGKSGKVDLSLQ 605
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
F +M C P+ Y V+IN C G ++A LL +M+
Sbjct: 606 LFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMK 646
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFR 199
FA+ +G W M R + +L TV C +I L E L +EA++ +RM+
Sbjct: 81 FAQALCKEGRWSDALVMIEREDFKL---DTVLCTQMISGLMEASLFDEAISFLHRMRCNS 137
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C P+V Y ++ + + ++ M G C P+ + L+ SYC
Sbjct: 138 CIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEG--CNPNPSLFNSLVHSYC 188
>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 653
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK + + GLV+ A+ F M +C PD Y Y +++ LC+V ++A LL++M++ G
Sbjct: 187 IIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEG 246
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P T+ +LI+ CK G
Sbjct: 247 --CFPSPATFNVLINGLCKKG 265
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F GN+ K + + K+M++ E +V LI L ++G V EA+ + +M CR
Sbjct: 437 FEVGNSHKAI-EVWKDMTKINCAENEVCYSV--LIHGLCKDGKVMEAMMVWAKMLATGCR 493
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDV AY+ +I LC G+ +A L +M PDV TY IL ++ CK
Sbjct: 494 PDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDSQPDVITYNILFNALCK 545
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 123 ERFFHFFHNEVTCKEMGIV------------FARGNNVKGLWDFLKEMSRRGNGELVTTS 170
+R F+++ V K+M I+ + V + +EM R + V +
Sbjct: 160 DRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKLGLVDNAIELFREMPVR---KCVPDA 216
Query: 171 TVTC-LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
C L+ L + ++EA++ M+ C P +NV+IN LC+ G+F + L++
Sbjct: 217 YTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDN 276
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M L G C P+ TY LI C G
Sbjct: 277 MFLKG--CVPNEVTYNTLIHGLCLKG 300
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMK-QFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMEL 232
+ K G+ L N+A+ FYRM +F C+P V ++N V+N + + G ++A F +
Sbjct: 113 MFKAYGKAHLPNKAIELFYRMSFEFYCKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGA 172
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
P+V ++ ++I S CK G+
Sbjct: 173 KDMNILPNVLSFNLIIKSMCKLGL 196
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM+ +G T + L+K E G ++A+ + M + C + Y+V+I+
Sbjct: 413 ILSEMTDKGCAP--NAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHG 470
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G +A + +M G C PDV Y+ +I C G
Sbjct: 471 LCKDGKVMEAMMVWAKMLATG--CRPDVVAYSSMIQGLCDAG 510
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFR--CRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+I+ L + G V EAL + M +PDV YN++ NALC+ + ++A LL M
Sbjct: 502 MIQGLCDAGSVEEALKLYNEMLCLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLD 561
Query: 233 PGFRCPPDVYTYTILI 248
G C PD+ T I +
Sbjct: 562 RG--CDPDLVTCNIFL 575
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G +V + L+ L +EG EA+ F C+ + Y+ +++ LCR ++A
Sbjct: 351 GYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEA 410
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+L +M G C P+ +T++ L+ + + G
Sbjct: 411 MKILSEMTDKG--CAPNAFTFSSLMKGFFEVG 440
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+ YN +I+ LC G +KA LL++M +C P+ TY +I+ K G
Sbjct: 282 CVPNEVTYNTLIHGLCLKGKLDKALSLLDRM--VSSKCVPNEVTYGTIINGLVKQG 335
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L +G +++AL+ RM +C P+ Y +IN L + G +L M
Sbjct: 288 TYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLM 347
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G+ + Y Y++L+S K G
Sbjct: 348 EERGYIV--NEYVYSVLVSGLFKEG 370
>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Brachypodium distachyon]
Length = 821
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
A GN K L + K+M+R G G +LVT + V K + ++A+A F MK
Sbjct: 237 AAGNWKKAL-ELCKKMTRNGVGPDLVTHNIVLSAFKNGSQ---YSKAIAYFEMMKGANIA 292
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
PD + N+VI+ L + G + +A LL M +CPPDV TYT ++ SY
Sbjct: 293 PDTFTLNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSY 342
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 138 MGIVFARGNNVK--GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
+G +RG + G++ LK+ NG + T L+ G G +A F M
Sbjct: 374 LGAYASRGMHADALGIFKLLKQ-----NGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEM 428
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
++ CRP++ +YN +I+A G F +A LL +ME G PPDV + + L+++
Sbjct: 429 RKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGI--PPDVVSISTLLTA 481
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ G+ +AL F +KQ RPDV +Y ++NA R G KAR ++M
Sbjct: 373 LLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNS 432
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
C P++ +Y LI +Y GM
Sbjct: 433 --CRPNIVSYNALIDAYGSAGM 452
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I++ +++A F+ M+++RC+PD YN +I+A R G + A +++ M
Sbjct: 161 MIRLHARHSQIDQARGLFFEMQEWRCKPDADIYNSLIHAHARAGQWRWAINIMDDMLRAA 220
Query: 235 FRCPPDVYTYTILISS 250
PP TY +I++
Sbjct: 221 I--PPSRTTYNNVINA 234
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +AL + M PD YN++I+ LC+VG + ++ E M R P
Sbjct: 521 GDYGKALELYAVMMASNVNPDAVTYNILISGLCKVGKYAESLKFFEDM--VDLRIPLTKE 578
Query: 243 TYTILISSYCKYGMQT 258
Y+ LI SY K G T
Sbjct: 579 VYSSLICSYVKQGKLT 594
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
+T + LI ++G + EA +TF MK+ C PDV Y +I A G++ A L
Sbjct: 575 LTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDL 634
Query: 227 LEQMELPGFRCPPDVYTYTILISS 250
++ME G PD + L+ +
Sbjct: 635 FKEME--GNTVQPDAIICSSLMEA 656
>gi|47848296|dbj|BAD22160.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 454
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 39/174 (22%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
A F+ W + + H C M + + + +W+ L +M RG LVT TV
Sbjct: 52 SALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQMWELLSDMHGRG---LVTVETVA 108
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFR---------------CR----------------- 201
I+ L + + F +++ C+
Sbjct: 109 KSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLDVLCKERKIEVAREVFAVLSPH 168
Query: 202 --PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y +N+ ++ C + ++A + +E+M+ GF PP V TYT ++ +YCK
Sbjct: 169 IPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGF--PPSVITYTTVLEAYCK 220
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + N + +++ L M +G V T T+ ++ L + EAL+ +RMK C
Sbjct: 217 AYCKQRNFRRVYEVLDSMGSQGCHPNVITYTM--IMTSLAKCERFEEALSVSHRMKSSGC 274
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD YN +IN L + G+ +A + ++E+P ++ TY +IS +C YG
Sbjct: 275 KPDTLFYNSLINLLGKSGHLFEASQVF-RVEMPMNGVSHNLATYNTMISIFCYYG 328
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+ T MK+ P V Y V+ A C+ NF + +L+ M G C P+V TY
Sbjct: 189 IDEAMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQG--CHPNVITY 246
Query: 245 TILISSYCK 253
T++++S K
Sbjct: 247 TMIMTSLAK 255
>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
Length = 524
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE GN K L F +EMS++G T T T LI V +G V E F
Sbjct: 300 CKE-------GNEKKALEVF-EEMSQKG--VRATAVTYTSLIYVFSRKGQVQETDRLFNV 349
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+ RPDV YN +IN+ C G+ +A ++ +ME R PPD TY L+ +C
Sbjct: 350 AVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKK--RIPPDDMTYNTLMRGFCLL 407
Query: 255 G 255
G
Sbjct: 408 G 408
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+ ++M +RG +T +T L+ L + ++A A M++ PDV+ YN++IN
Sbjct: 241 YREDMVQRGIA--MTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILING 298
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ GN KA + E+M G R TYT LI + + G
Sbjct: 299 YCKEGNEKKALEVFEEMSQKGVRA--TAVTYTSLIYVFSRKG 338
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 164 GELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
GE+ ++ + LI + G ++ AL M Q V YN++++AL +
Sbjct: 213 GEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASD 272
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A +LE+M+ GF PDV+TY ILI+ YCK G
Sbjct: 273 AYAVLEEMQKNGFS--PDVFTYNILINGYCKEG 303
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T+T +++ L G AL +M RP+ YN VI C G A ++
Sbjct: 116 TTTFNIMLRHLCATGKPVRALELLRQMP----RPNAVTYNTVIAGFCARGRVQAALEVMR 171
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M G PD YTY LIS +CK G
Sbjct: 172 EMRERG-GIAPDKYTYATLISGWCKIG 197
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-FRCR 201
A G V+ L + L++M R VT +TV I G V AL M++
Sbjct: 128 ATGKPVRAL-ELLRQMPRPNA---VTYNTV---IAGFCARGRVQAALEVMREMRERGGIA 180
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y Y +I+ C++G A + ++M G P Y LI YC G
Sbjct: 181 PDKYTYATLISGWCKIGRMEDAVKVFDEMLTKG-EVAPSAVMYNALIGGYCDVG 233
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ EM++RG +LV+ +T LI +G + +AL M P + YN +I
Sbjct: 416 LIDEMTKRGIQPDLVSYNT---LISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQ 472
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
LC++ + A L+++M G PD TY LI
Sbjct: 473 GLCKIRQGDDAENLMKEMVAKGIT--PDDSTYISLI 506
>gi|255554881|ref|XP_002518478.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542323|gb|EEF43865.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N+V W KEM G E +T +I LG+EG + EA++ YR + P+V
Sbjct: 142 NDVNRFWKMYKEMVSYGYIE--NVNTFNLIIYALGKEGRLVEAVSVIYRSLKTGIWPNVV 199
Query: 206 AYNVVINALCRVGNFNKARFLLEQME-LPGFRCPPDVYTYTILISSYCKYG 255
+N++I+ ++G + A L+ +ME + G PD TY ++ +CK G
Sbjct: 200 TFNMIIDGAIKMGAMDLALKLVRKMEVMSGCSVKPDSVTYNSFVNGFCKIG 250
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + +I+ L G +NEA + + D +++NVVIN LCR N A+ LL M
Sbjct: 343 TYSIVIEGLCRNGYLNEAFKFLQMILEMSLVRDAFSHNVVINYLCRSNNLAGAKQLLANM 402
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G PDV T+ LI +CK G
Sbjct: 403 YVRGL--VPDVVTFGTLIDRHCKDG 425
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+ + R G ++VT +T LI G +++A A F M+ YN +IN+
Sbjct: 468 LIDTLRRMGLFDVVTYNT---LIHGYCNCGKIDQAFALFSEMRNSGILASHVTYNTLINS 524
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC+ G+ +A+ L++ M L G PD TYTILI+S+ K
Sbjct: 525 LCKAGHVLQAKELMKMMVLRGL--IPDYVTYTILITSFSK 562
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R NN+ G L M RG ++VT T LI ++G V A+ + +M +
Sbjct: 386 LCRSNNLAGAKQLLANMYVRGLVPDVVTFGT---LIDRHCKDGKVENAIQVYEKMIKTGE 442
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P++ YN VIN + G+F+ A L++ + G DV TY LI YC G
Sbjct: 443 KPNLLIYNSVINGFAKEGSFDPAILLIDTLRRMGLF---DVVTYNTLIHGYCNCG 494
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L + +I L EG + A M R PD + Y++VI LCR G N+A
Sbjct: 301 GLLPNSVIYNSIIHWLSMEGDMEGASLLLSDMIDKRIYPDQFTYSIVIEGLCRNGYLNEA 360
Query: 224 -RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+FL +E+ R D +++ ++I+ C+
Sbjct: 361 FKFLQMILEMSLVR---DAFSHNVVINYLCR 388
>gi|341605687|gb|AEK82946.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
B+A L ++ME C VYTYTILIS
Sbjct: 174 BEAMTLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 82
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ DV TY+++++ CK G
Sbjct: 83 FK--XDVVTYSVVVNGLCKNG 101
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM + DV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKXDVVTYSVVV 94
Query: 212 NALCR-----------------------------------VGNFNKARFLLEQMELPGFR 236
N LC+ G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 18 HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLIDGYAKSG 66
>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
[Arabidopsis lyrata subsp. lyrata]
gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 1164
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L +EG ++ A + M + +P+++ YN ++N LC+ GN +A L+ +
Sbjct: 881 TYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 940
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G D TYT L+ +YCK G
Sbjct: 941 EAAGLNA--DTVTYTTLMDAYCKSG 963
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G L T T L+ + G + A FY M PDV Y +I+ C++G+
Sbjct: 767 GQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMV 826
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A L +M G PD+ T+T L++ YCK G
Sbjct: 827 EAGKLFHEMLCRGLE--PDIITFTELMNGYCKAG 858
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+V +YN+VI+ +C++G N+A LL MEL G+ PDV +Y+ +I+ YC++G
Sbjct: 668 NVASYNIVIHFVCQLGRINEAHHLLLLMELKGYT--PDVISYSTVINGYCRFG 718
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +NEA M+ PDV +Y+ VIN CR G +K L+E+M+ G + P+ Y
Sbjct: 683 GRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLK--PNSY 740
Query: 243 TYTILISSYCK 253
TY +I C+
Sbjct: 741 TYGSIIGLLCR 751
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + +++ F EM R V T T +I + G + EA F+ M
Sbjct: 784 FCKRGDIRAASKFFYEMHSRDITPDVLT--YTAIISGFCQIGDMVEAGKLFHEMLCRGLE 841
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ + ++N C+ G+ A + M G C P+V TYT LI CK G
Sbjct: 842 PDIITFTELMNGYCKAGHIKDAFRVHNHMIQAG--CSPNVVTYTTLIDGLCKEG 893
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R + +W +++M ++G + T +I +L + EA F M
Sbjct: 714 YCRFGELDKVWKLIEKMKQKGLKP--NSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGIL 771
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y +++ C+ G+ A +M PDV TYT +IS +C+ G
Sbjct: 772 PDTIVYTTLVDGFCKRGDIRAASKFFYEMH--SRDITPDVLTYTAIISGFCQIG 823
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
+T CL+K + A A + M PD Y ++ C N +A FL +
Sbjct: 1019 ATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQ 1078
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
+M+ GF V TY++LI + K
Sbjct: 1079 EMKGKGFSV--SVSTYSVLIKGFFK 1101
>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
Length = 584
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
++KG DF M R N L +T + L+ G ++ A+ + MK C+P+V
Sbjct: 289 DLKGALDFFNSMKR--NALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVV 346
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +I+ LC+ F++A L+++M + CPP+ T+ LI C G
Sbjct: 347 YTNMIDVLCKKMMFDQAESLIDKMLMD--NCPPNTVTFNTLIGRLCDCG 393
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 56/145 (38%), Gaps = 40/145 (27%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR----- 201
+V G+ L+EM RG T + I G + AL TFYR CR
Sbjct: 13 DVDGVQYALQEMRLRGVA--CTEDALVAAIGAFARAGSADRALKTFYRASDLGCRDPGVR 70
Query: 202 -------------------------------PDVYAYNVVINALCRVGNFNKARFLLEQM 230
P+VY YN++I ALC+ + AR +L++M
Sbjct: 71 VYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEM 130
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C PD ++ ++S CK G
Sbjct: 131 SRKG--CHPDEVSHGTIVSGMCKLG 153
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 112 INKATEFYHWVERFFHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTT 169
+ +A +H + R + H N+ T E+ R N K + + EM G LVT
Sbjct: 395 VGRALNVFHGMRR--NGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTY 452
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+TV I L + + A+ RM +PD + +N +I+A C+ G + A LL Q
Sbjct: 453 NTV---INCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQ 509
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M CP +V YTILIS C G
Sbjct: 510 MN--AVNCPRNVVAYTILISELCNQG 533
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+K E+G V++AL+ ++ M P +YNV+I LC +G+ A M
Sbjct: 241 TFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSM 300
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ P+ TY+ L+ + G
Sbjct: 301 KRNALL--PNATTYSTLVDGFSNAG 323
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 37/122 (30%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-------------------DVYA--- 206
T T LI L + G V AL F+ M++ C P D +A
Sbjct: 379 TVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVI 438
Query: 207 -------------YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN VIN LC++ A LL +M + G + PD +T+ +I +YCK
Sbjct: 439 EMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQ--PDAFTFNAIIHAYCK 496
Query: 254 YG 255
G
Sbjct: 497 EG 498
>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
Length = 721
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
++ ++EM +G + TST + +I L V +A F MK+ PDVY Y +I
Sbjct: 207 YNVIREMMSKGF--IPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLI 264
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++ C+ G +AR ++ME G C P+V TYT LI +Y K
Sbjct: 265 DSFCKAGFIEQARNWFDEMERDG--CAPNVVTYTALIHAYLK 304
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 6/163 (3%)
Query: 95 LVLGPAAYRNPQKVTLGINKATEFYHWVERFFH--FFHNEVTCKEMGIVFARGNNVKGLW 152
+VL N + GI K + Y+ + F + T ++ + V+ +
Sbjct: 183 VVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAF 242
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+EM R NG T LI + G + +A F M++ C P+V Y +I+
Sbjct: 243 QLFQEMKR--NGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIH 300
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A + +KA + E M G C P++ TYT LI CK G
Sbjct: 301 AYLKSRKVSKANEVYEMMLSKG--CTPNIVTYTALIDGLCKAG 341
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L ++ ++ AL +M + C P+V Y +I+ LC+VG ++A L+ M
Sbjct: 451 TYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMM 510
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G C P+V TYT +I + K G
Sbjct: 511 EEKG--CNPNVVTYTAMIDGFGKSG 533
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L + G +EA M++ C P+V Y +I+ + G K LL+QM G
Sbjct: 490 MIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKG 549
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
C P+ TY +LI+ C G+
Sbjct: 550 --CAPNFVTYRVLINHCCSTGL 569
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + ++ ++ EM R G V T T LI + V++A + M C
Sbjct: 267 FCKAGFIEQARNWFDEMERDGCAPNVVTYTA--LIHAYLKSRKVSKANEVYEMMLSKGCT 324
Query: 202 PDVYAYNVVINALCRVGNFNKARFLL-----EQMELP----------GFRCPPDVYTYTI 246
P++ Y +I+ LC+ G KA + E +E+P G P+V+TY
Sbjct: 325 PNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGA 384
Query: 247 LISSYCK 253
L+ CK
Sbjct: 385 LVDGLCK 391
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 19/102 (18%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQ-----------FRC------RPDVYAYNVVINA 213
T T LI L + G + +A + MK+ FR P+V+ Y +++
Sbjct: 329 TYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDG 388
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ +AR LL+ M + G C P+ Y LI CK G
Sbjct: 389 LCKAYQVKEARDLLKSMSVEG--CEPNHVVYDALIDGCCKAG 428
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I G+ G V + L +M C P+ Y V+IN C G ++A LLE+M
Sbjct: 521 TYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEM 580
Query: 231 E 231
+
Sbjct: 581 K 581
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ VK D LK MS G LI + G ++EA F M +
Sbjct: 389 LCKAYQVKEARDLLKSMSVEGCEP--NHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYD 446
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+VY Y+ +I+ L + + A +L +M C P+V YT +I CK G
Sbjct: 447 PNVYTYSSLIDRLFKDKRLDLALKVLSKM--LENSCAPNVVIYTEMIDGLCKVG 498
>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
Length = 665
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
A GN K L + K+M+ G G +LVT + V + L ++A++ F MK
Sbjct: 93 AAGNWKKAL-ELCKKMTENGVGPDLVTHNIV---LSALKNGAQYSKAISYFEIMKGANVT 148
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D + N++I+ L ++G +A L M +CPPDV TYT ++ SYC YG
Sbjct: 149 SDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYG 202
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+EG ++EA +TF MK+ C PDV Y +I A G + +A L ++ME+ G PPD
Sbjct: 433 KEGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGI--PPD 490
Query: 241 VYTYTILISSYCKYG 255
+ L+ ++ K G
Sbjct: 491 AIICSSLMEAFNKGG 505
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
++ + N K ++D + + N +V ++ L+ G+ EALA F +K+
Sbjct: 200 IYGQVENCKAIFDLMVAEGVKPN--IVAYNS---LLGAYASRGMHREALAIFNLIKKNGL 254
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
RPD+ +Y ++NA R KAR + +M+ C P+ +Y LI +Y GM
Sbjct: 255 RPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNS--CKPNKVSYNALIDAYGSAGM 308
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I++ V++A F+ M+++RC+PD YN +I+A R G + A ++E M
Sbjct: 17 MIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAA 76
Query: 235 FRCPPDVYTYTILISS 250
PP TY +I++
Sbjct: 77 I--PPTRTTYNNVINA 90
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ NG + T L+ G +A F +MK+ C+P+ +YN +I+A G
Sbjct: 250 KKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGML 309
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
+A LL +ME G + PDV + + L+++
Sbjct: 310 KEAVGLLHEMEKDGIQ--PDVVSISTLLAA 337
>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Brachypodium distachyon]
Length = 814
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
G N+KG + L+ M +G + T +I+ ++ + EAL M + +
Sbjct: 487 LCEGKNMKGATEVLRTMVNKGME--LDNITYNIMIQGCCKDSKIEEALKLRDDMIRKGFK 544
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y +N +I+A C +G +A LL QM++ G + PDV +Y +I YCK
Sbjct: 545 PDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQ--PDVVSYGTIIDGYCK 594
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC-LIKVLGEEGLVNEALATFYRMKQFRC 200
+ R N+ G L M G + T+ C L+ + GLV+EA F + ++
Sbjct: 627 YGRNGNISGAIGVLDTMESIG---IQPTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSI 683
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V Y ++I LC++G ++A E+M PP+ TYT L+ +YCK G
Sbjct: 684 EVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSI--PPNKITYTTLMYAYCKSG 736
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L + G V+EA+ RM++ R P + + ++IN L R F + LL +ME G
Sbjct: 272 LMDALCKSGRVDEAIRLKGRMEESRVAPSMVTFGILINGLKRSDRFGEVGALLREME--G 329
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+ LI +C+ G
Sbjct: 330 LGITPNEVICNELIDWHCRKG 350
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + EAL +MK +PDV +Y +I+ C+ + KA L ++ G + P+
Sbjct: 561 GKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLK--PNAV 618
Query: 243 TYTILISSYCKYG 255
Y LI Y + G
Sbjct: 619 IYNALIGGYGRNG 631
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDVYAYNVVINALCRVGNFNKARFL 226
+ T L++ L G + F M+ + P+ Y+Y +I ALC+VG + +
Sbjct: 192 SVKTCNALLEALARTGNLGATCKVFDEMRDCKTVTPNGYSYTSMIKALCKVGKVDDGFKI 251
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
L + G + Y +L+ + CK G
Sbjct: 252 LSDLIHAGLQQSAGAVPYNLLMDALCKSG 280
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 150 GLWDFLKEM--SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
GL D K M R N V T +I+ L + G ++EA+ F M+ P+ Y
Sbjct: 666 GLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITY 725
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
++ A C+ GN +A L ++M G PD +Y L++ +
Sbjct: 726 TTLMYAYCKSGNNEEASKLFDEMVSSGI--VPDNVSYNTLVTGF 767
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R G+W LK + + G + +T LI L E + A M D
Sbjct: 457 RHQEAVGIW--LKMLEK---GLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELD 511
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN++I C+ +A L + M GF+ PD Y + +I +YC G
Sbjct: 512 NITYNIMIQGCCKDSKIEEALKLRDDMIRKGFK--PDAYMFNSIIHAYCDLG 561
>gi|225425882|ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial [Vitis vinifera]
Length = 496
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ R +N + +++ L +M +G +VT +T+ C + + + EAL RM+ C
Sbjct: 260 YCRQSNFRKVYELLDDMQAQGCAPNVVTYTTIMCSLTKVEQ---FEEALQIAERMRSVGC 316
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
+PD YN +I+ L R G +A + E +E+P PP+ TY +I+ +C + +
Sbjct: 317 KPDTLFYNALIHTLGRAGQLREAVRVFE-VEMPKTGVPPNTSTYNSMIAMFCHHSQE 372
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+EA T MK CRP V +Y+ +I + CR NF K LL+ M+ G C P+V TY
Sbjct: 231 VDEAEWTIQEMKGHGCRPCVISYSTIIQSYCRQSNFRKVYELLDDMQAQG--CAPNVVTY 288
Query: 245 TILISSYCK 253
T ++ S K
Sbjct: 289 TTIMCSLTK 297
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 150 GLW-DFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G W D ++ GN EL T ++ L+ L +E V +A A F +K P+ + +
Sbjct: 160 GEWEDAVRVFDDLGNFELEKNTESMNLLLDTLCKERKVEQARAIFLELKP-HISPNTHTF 218
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N+ I+ C+ ++A + +++M+ G C P V +Y+ +I SYC+
Sbjct: 219 NIFIHGWCKANRVDEAEWTIQEMK--GHGCRPCVISYSTIIQSYCR 262
>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
Length = 641
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + K + L EM+ RG V +I + G + +A+ T M + C+
Sbjct: 265 FCKKGDFKAIDRLLMEMNSRG--LTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCK 322
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ YN +I+ CR G ++A LLEQ G P+ ++YT LI +YCK G
Sbjct: 323 PDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLM--PNKFSYTPLIHAYCKQG 374
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFY 193
CK+ G + R +N +L EM+ RG+ +LVT + + V GE V+ AL
Sbjct: 371 CKQGG--YDRASN------WLIEMTERGHKPDLVTYGALVHGLVVAGE---VDVALTIRE 419
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M + PD YN++++ LC+ A+ LL +M PD + Y L+ + +
Sbjct: 420 KMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVL--PDAFVYATLVDGFIR 477
Query: 254 YG 255
G
Sbjct: 478 NG 479
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD + Y +++ R GN ++AR L E G P + Y +I YCK+GM
Sbjct: 463 PDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMN--PGIVGYNAMIKGYCKFGM 515
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 68/195 (34%), Gaps = 51/195 (26%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEM--------GIVFARGNN---VKGLWDFLK-EMS 159
+ KA E Y++V + + +F + + C + I AR VKGL K E
Sbjct: 145 VEKALELYYFVLKTYTYFPDVIACNSLLNMLVKLGRIEIARKFTCIMVKGLCKEGKLEEG 204
Query: 160 RR------GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
R+ G G + LI ++G + A F +K P V Y +IN
Sbjct: 205 RKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIING 264
Query: 214 LCRVGNFNKARFLLEQMELPGFR---------------------------------CPPD 240
C+ G+F LL +M G C PD
Sbjct: 265 FCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPD 324
Query: 241 VYTYTILISSYCKYG 255
+ TY LIS C+ G
Sbjct: 325 IVTYNTLISGSCRDG 339
>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
Length = 814
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G+G T LIK G++++A+ F M+ +PDV Y VI ALCR+G +
Sbjct: 387 GDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD 446
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A QM G PD Y Y LI +C +G
Sbjct: 447 DAMEKFNQMIDQGV--APDKYAYNCLIQGFCTHG 478
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 175 LIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L++ E +EAL +R + C PDV++Y++++ +LC G +A LL M
Sbjct: 152 LLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 211
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G C P+V Y +I + K G
Sbjct: 212 GAVCSPNVVAYNTVIDGFFKEG 233
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 153 DFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
D L+ M+ G + +V +TV I +EG VN+A F M Q PD+ YN
Sbjct: 203 DLLRMMAEGGAVCSPNVVAYNTV---IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNS 259
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V++ALC+ +KA L QM R P+ +TY LI Y G
Sbjct: 260 VVHALCKARAMDKAEAFLRQM--VNKRVLPNNWTYNNLIYGYSSTG 303
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G EA+ F M++ PDV ++++ +LC+ G +AR + + M + G
Sbjct: 295 LIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 354
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PDV++Y I+++ Y G
Sbjct: 355 QN--PDVFSYNIMLNGYATKG 373
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 145 GNNVKGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
G + G W KEM R + L T++ L+ L + G + EA F M
Sbjct: 298 GYSSTGQWKEAVRVFKEMRR--HSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 355
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PDV++YN+++N G L + M G PD YT+ +LI +Y GM
Sbjct: 356 NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGI--APDFYTFNVLIKAYANCGM 409
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT TV I L G +++A+ F +M PD YAYN +I C G+ KA+
Sbjct: 428 DVVTYRTV---IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAK 484
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L+ ++ G D+ ++ +I++ CK G
Sbjct: 485 ELISEIMNNGMHL--DIVFFSSIINNLCKLG 513
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + + +I L + G V +A F PD Y+++++ C VG K
Sbjct: 493 NGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEK 552
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A + + M G P+V Y L++ YCK G
Sbjct: 553 ALRVFDAMVSAGIE--PNVVVYCTLVNGYCKIG 583
>gi|224576641|gb|ACN56994.1| At1g03560-like protein [Capsella grandiflora]
Length = 196
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 84 RFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALXKHGKV 143
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++A L ++ME C VYTYTILIS K
Sbjct: 144 DEAMXLFKRMEEEE-GCDQTVYTYTILISGMFK 175
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +NE A F M + +P+V Y V+I+ + G+ A LL +M GF+ PDV
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK--PDVV 58
Query: 243 TYTILISSYCKYG 255
TY+++++ CK G
Sbjct: 59 TYSVVVNGLCKNG 71
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 39/133 (29%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC-- 215
M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+N LC
Sbjct: 13 MIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKN 70
Query: 216 ---------------------------------RVGNFNKARFLLEQMELPGFRCPPDVY 242
+ G ++A L E+M G C D Y
Sbjct: 71 GRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKG--CTRDSY 128
Query: 243 TYTILISSYCKYG 255
Y LI + K+G
Sbjct: 129 CYNALIDALXKHG 141
>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
Length = 457
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E TCK G K L EM +G + T V ++ + +EG V++A+
Sbjct: 75 EATCKRSG--------YKQAMKLLDEMRDKGCTPDIVTYNV--VVNGICQEGRVDDAIEF 124
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+ + C P+ +YN+V+ LC + A L+ +M G CPP+V T+ +LIS
Sbjct: 125 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKG--CPPNVVTFNMLISFL 182
Query: 252 CKYGM 256
C+ G+
Sbjct: 183 CRKGL 187
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI+ L G ALA M + RC PDV Y +++ A C+ + +A LL++M
Sbjct: 34 TYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEM 93
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C PD+ TY ++++ C+ G
Sbjct: 94 RDKG--CTPDIVTYNVVVNGICQEG 116
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ + EM ++G V T + LI L +GLV AL ++ ++ C P+ +YN +++
Sbjct: 158 ELMGEMGQKGCPPNVVTFNM--LISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLH 215
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A C+ +KA L+ M G C PD+ +Y L+++ C+ G
Sbjct: 216 AFCKQKKMDKAMAFLDLMVSRG--CYPDIVSYNTLLTALCRSG 256
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
RG L L EM RR V T T+ L++ + +A+ M+ C P
Sbjct: 44 GRGRTANALA-VLDEMLRRRCVPDVVTYTI--LLEATCKRSGYKQAMKLLDEMRDKGCTP 100
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
D+ YNVV+N +C+ G + A L+ LP + C P+ +Y I++ C
Sbjct: 101 DIVTYNVVVNGICQEGRVDDAIEFLKN--LPSYGCEPNTVSYNIVLKGLC 148
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + + FL M RG ++V+ +T L+ L G V+ A+ +++K C
Sbjct: 217 FCKQKKMDKAMAFLDLMVSRGCYPDIVSYNT---LLTALCRSGEVDVAVELLHQLKDKGC 273
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P + +YN VI+ L + G +A LL +M G + PD+ TY+ + + C+
Sbjct: 274 APVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQ--PDIITYSTIAAGLCR 324
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y YN +I LC G A +L++M RC PDV TYTIL+ + CK
Sbjct: 29 EPDAYTYNTLIRGLCGRGRTANALAVLDEMLR--RRCVPDVVTYTILLEATCK 79
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+A M C PD+ +YN ++ ALCR G + A LL Q++ G C P + +Y
Sbjct: 223 MDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKG--CAPVLISY 280
Query: 245 TILISSYCKYG 255
+I K G
Sbjct: 281 NTVIDGLTKAG 291
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ K + L EM +G +++T ST+ L E + +A+ F +++
Sbjct: 287 LTKAGKTKEALELLNEMVSKGLQPDIITYSTIA---AGLCREDRIEDAIRAFGKVQDMGI 343
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
RP+ YN +I LC+ + A L M G C P+ TYTILI G+
Sbjct: 344 RPNTVLYNAIILGLCKRRETHSAIDLFAYM--IGNGCMPNESTYTILIEGLAYEGL 397
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G+G T LIK G++++A+ F M+ +PDV Y VI ALCR+G +
Sbjct: 390 GDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD 449
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A QM G PD Y Y LI +C +G
Sbjct: 450 DAMEKFNQMIDQGV--APDKYAYNCLIQGFCTHG 481
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 175 LIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L++ E +EAL +R + C PDV++Y++++ +LC G +A LL M
Sbjct: 155 LLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 214
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G C P+V Y +I + K G
Sbjct: 215 GAVCSPNVVAYNTVIDGFFKEG 236
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 153 DFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
D L+ M+ G + +V +TV I +EG VN+A F M Q PD+ YN
Sbjct: 206 DLLRMMAEGGAVCSPNVVAYNTV---IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNS 262
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V++ALC+ +KA L QM R P+ +TY LI Y G
Sbjct: 263 VVHALCKARAMDKAEAFLRQM--VNKRVLPNNWTYNNLIYGYSSTG 306
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G EA+ F M++ PDV ++++ +LC+ G +AR + + M + G
Sbjct: 298 LIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 357
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PDV++Y I+++ Y G
Sbjct: 358 QN--PDVFSYNIMLNGYATKG 376
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 145 GNNVKGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
G + G W KEM R + L T++ L+ L + G + EA F M
Sbjct: 301 GYSSTGQWKEAVRVFKEMRR--HSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 358
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PDV++YN+++N G L + M G PD YT+ +LI +Y GM
Sbjct: 359 NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGI--APDFYTFNVLIKAYANCGM 412
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT TV I L G +++A+ F +M PD YAYN +I C G+ KA+
Sbjct: 431 DVVTYRTV---IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAK 487
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L+ ++ G D+ ++ +I++ CK G
Sbjct: 488 ELISEIMNNGMHL--DIVFFSSIINNLCKLG 516
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + + +I L + G V +A F PD YN++++ C VG K
Sbjct: 496 NGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEK 555
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A + + M G P+V Y L++ YCK G
Sbjct: 556 ALRVFDAMVSAGIE--PNVVGYGTLVNGYCKIG 586
>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 950
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I+ L +EG V EAL M + RPD YN +I C +G ++A L ++E+
Sbjct: 342 TIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESL--RLEI 399
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
C P+ +TY+ILI CK G+
Sbjct: 400 SKHDCFPNNHTYSILICGMCKNGL 423
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W L+E+ + + +++ + LI+ E G+ +A+ +F M+ F C+PD++A+N+++
Sbjct: 113 WKVLQEL--KNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDFDCKPDLFAFNLIL 170
Query: 212 NALCRVGNFNKARFLLEQMELPGFRC--PPDVYTYTILISSYCK 253
+ L R F A + QM +C PDV TY ILI CK
Sbjct: 171 HFLVRKEAFLLALAVYNQM----LKCNLNPDVVTYGILIHGLCK 210
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+G ++ +++ +++ L E G++ +A ++ PD+ YN++IN C+ GN
Sbjct: 483 QGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNI 542
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N A L ++M+L G PD TY LI + G
Sbjct: 543 NGAFKLFKEMQLKGHM--PDSVTYGTLIDGLYRAG 575
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM+ RG T LIK + G ++EA + + + C P+ + Y+++I
Sbjct: 360 LLGEMTERGLRP--DTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICG 417
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+C+ G NKA+ + ++ME G C P V T+ LI+ CK
Sbjct: 418 MCKNGLINKAQHIFKEMEKLG--CLPSVVTFNSLINGLCK 455
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 15/99 (15%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI + + GL+N+A F M++ C P V +N +IN LC+ +AR L QM
Sbjct: 410 TYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQM 469
Query: 231 ELPGFRCPP-------------DVYTYTILISSYCKYGM 256
E+ R P D+ + +++ C+ GM
Sbjct: 470 EI--VRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGM 506
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G ++ CLI L EA + +M + +PDV Y ++I L + G +
Sbjct: 297 DGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTE 356
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A LL +M G R PD Y LI +C G
Sbjct: 357 ALTLLGEMTERGLR--PDTICYNALIKGFCDMG 387
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + +AL F M P+ Y++V++ LC+ A+ L +M
Sbjct: 200 TYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKM 259
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C D+ TY +L++ +CK G
Sbjct: 260 RASG--CNRDLITYNVLLNGFCKSG 282
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
M +G L T LI + G +N A F M+ PD Y +I+ L R
Sbjct: 515 MQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRA 574
Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
G A + EQM G C P+ TY +++ C+
Sbjct: 575 GRNEDALEIFEQMVKKG--CVPESSTYKTIMTWSCR 608
>gi|357515141|ref|XP_003627859.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355521881|gb|AET02335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 731
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ L ++G+ + + RM Q P++Y YN +I+A + + +A F+L +ME+
Sbjct: 169 TVLMNSLLKDGITSMVWKVYKRMVQDGVVPNIYVYNCLIHACSKSRDVERAEFILNEMEV 228
Query: 233 PGFRCPPDVYTYTILISSYCKYGMQ 257
G PD++TY LI+ YCK G+
Sbjct: 229 KGV--VPDIFTYNTLIALYCKKGLH 251
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 154 FLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
L EMS R V +VTC LI + G +N AL +M + P+ + Y +I
Sbjct: 360 LLHEMSERK----VQADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALI 415
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ C+ A+ LL M GF P+ TY+ ++ SYCK
Sbjct: 416 HGFCKTSELESAKELLFGMLDAGF--SPNYRTYSWIVDSYCK 455
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +++ L +G + +A + M + + + D N +INA C++G+ N A +M
Sbjct: 340 TYNSILRKLCSDGRIRDANKLLHEMSERKVQADSVTCNTLINAYCKIGDLNSALKFKTKM 399
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G P+ +TY LI +CK
Sbjct: 400 LEAGL--TPNSFTYKALIHGFCK 420
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI + ++GL EAL+ +M++ D+ +YN +I C+ G +A + ++
Sbjct: 237 TYNTLIALYCKKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREAMRMFGEI 296
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ P+ TYT LI YCK
Sbjct: 297 K----DAIPNHVTYTTLIDGYCK 315
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+W K M + +G + CLI + V A M+ PD++ YN +
Sbjct: 184 VWKVYKRMVQ--DGVVPNIYVYNCLIHACSKSRDVERAEFILNEMEVKGVVPDIFTYNTL 241
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I C+ G +A + ++ME G D+ +Y LI +CK G
Sbjct: 242 IALYCKKGLHYEALSVQDKMEREGINL--DIVSYNSLIYGFCKEG 284
>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 148 VKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
+K EM RRG+ ++++ STV I L + G + AL +M++ C+P++ A
Sbjct: 178 IKEAVGLFNEMVRRGHQPDVISYSTV---INGLCKSGNTSMALQLLRKMEEKGCKPNLVA 234
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +I++LC+ N A LL +M G PPDV TY+ ++ +C G
Sbjct: 235 YTTIIDSLCKDTLVNDAMDLLSEMVDRGI--PPDVVTYSTILHGFCSLG 281
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
EG + EA+ F M + +PDV +Y+ VIN LC+ GN + A LL +ME G C P++
Sbjct: 175 EGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKG--CKPNL 232
Query: 242 YTYTILISSYCK 253
YT +I S CK
Sbjct: 233 VAYTTIIDSLCK 244
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G + T T T L+ L +EG+V+EA F M + P+ Y YN +++ C +
Sbjct: 295 GRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMD 354
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+A+ +L+ M G C P V++Y ILI+ YCK
Sbjct: 355 EAQKVLDIMVDKG--CAPVVHSYNILINGYCK 384
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ N L++M +G LV +T+ I L ++ LVN+A+ M
Sbjct: 207 LCKSGNTSMALQLLRKMEEKGCKPNLVAYTTI---IDSLCKDTLVNDAMDLLSEMVDRGI 263
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PDV Y+ +++ C +G+ N+A L +M G P+ T+TIL+ CK GM
Sbjct: 264 PPDVVTYSTILHGFCSLGHLNEATILFNEM--VGRNVMPNTVTFTILVDGLCKEGM 317
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 148 VKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
V D L EM RG ++VT ST+ LG +NEA F M P+
Sbjct: 248 VNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGH---LNEATILFNEMVGRNVMPNTVT 304
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ ++++ LC+ G ++AR + E M G P+ YTY L+ YC
Sbjct: 305 FTILVDGLCKEGMVSEARCVFEAMTKKG--AEPNAYTYNALMDGYC 348
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 152 WDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+ KEM G +L+T ST L+ L + G ++EAL M++ + PD+ YN++
Sbjct: 427 LNLFKEMCSSGLLPDLMTYST---LLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNIL 483
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
I + G A+ L ++ G + P + TYTI+I K G+
Sbjct: 484 IEGMFIAGKLEVAKELFSKLFADGIQ--PTIRTYTIMIKGLLKEGLS 528
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 154 FLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L EMS + EL T T + L++ L + G EAL F M PD+ Y+ +++
Sbjct: 394 LLVEMSEK---ELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLD 450
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
LC+ G+ ++A LL+ M+ + PD+ Y ILI
Sbjct: 451 GLCKHGHLDEALKLLKSMQES--KIEPDIVLYNILI 484
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA + M + PD Y+ ++ LC+VG +A L ++M G PD+ TY
Sbjct: 388 LDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLL--PDLMTY 445
Query: 245 TILISSYCKYG 255
+ L+ CK+G
Sbjct: 446 STLLDGLCKHG 456
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA M C P V++YN++IN C+ ++A+ LL +E+ PD TY
Sbjct: 353 MDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLL--VEMSEKELTPDTVTY 410
Query: 245 TILISSYCKYG 255
+ L+ C+ G
Sbjct: 411 STLMQGLCQVG 421
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A++ +M + +PD +N +IN C G +A L +M G + PDV +Y+ +
Sbjct: 146 AISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQ--PDVISYSTV 203
Query: 248 ISSYCKYG 255
I+ CK G
Sbjct: 204 INGLCKSG 211
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++ALA+FYRM + RP V + + ++ + ++ L QM+L F +VY+
Sbjct: 73 IDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDL--FGVTHNVYSL 130
Query: 245 TILISSYCK 253
ILI+ C+
Sbjct: 131 NILINCLCR 139
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRR--GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
+ G + G + KE+ + +G T T T +IK L +EGL +EA F +M+
Sbjct: 482 ILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDD 541
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
P+ +YNV+I + + + A L+++M G R D T+ +L+
Sbjct: 542 GFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEM--VGKRFSADSSTFQMLLD 590
>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
Length = 583
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
A GN K L + K+M+ G G +LVT + V + L ++A++ F MK
Sbjct: 93 AAGNWKKAL-ELCKKMTENGVGPDLVTHNIV---LSALKNGAQYSKAISYFEIMKGANVT 148
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D + N++I+ L ++G +A L M +CPPDV TYT ++ SYC YG
Sbjct: 149 SDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYG 202
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ G+ EALA F +K+ RPD+ +Y ++NA R KAR + +M+
Sbjct: 229 LLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNS 288
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
C P+ +Y LI +Y GM
Sbjct: 289 --CKPNKVSYNALIDAYGSAGM 308
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I++ V++A F+ M+++RC+PD YN +I+A R G + A ++E M
Sbjct: 17 MIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAA 76
Query: 235 FRCPPDVYTYTILISS 250
PP TY +I++
Sbjct: 77 I--PPTRTTYNNVINA 90
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ NG + T L+ G +A F +MK+ C+P+ +YN +I+A G
Sbjct: 250 KKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGML 309
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
+A LL +ME G + PDV + + L+++
Sbjct: 310 KEAVGLLHEMEKDGIQ--PDVVSISTLLAA 337
>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
Length = 584
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E TCK G K L EM +G + T V ++ + +EG V++A+
Sbjct: 203 EATCKRSG--------YKQAMKLLDEMRDKGCTPDIVTYNV--VVNGICQEGRVDDAIEF 252
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+ + C P+ +YN+V+ LC + A L+ +M G CPP+V T+ +LIS
Sbjct: 253 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKG--CPPNVVTFNMLISFL 310
Query: 252 CKYGM 256
C+ G+
Sbjct: 311 CRKGL 315
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI+ L G ALA M + RC PDV Y +++ A C+ + +A LL++M
Sbjct: 162 TCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEM 221
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C PD+ TY ++++ C+ G
Sbjct: 222 RDKG--CTPDIVTYNVVVNGICQEG 244
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ + EM ++G V T + LI L +GLV AL ++ ++ C P+ +YN +++
Sbjct: 286 ELMGEMGQKGCPPNVVTFNM--LISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLH 343
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A C+ +KA L+ M G C PD+ +Y L+++ C+ G
Sbjct: 344 AFCKQKKMDKAMAFLDLMVSRG--CYPDIVSYNTLLTALCRSG 384
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
RG L L EM RR V T T+ L++ + +A+ M+ C P
Sbjct: 172 GRGRTANALA-VLDEMLRRRCVPDVVTYTI--LLEATCKRSGYKQAMKLLDEMRDKGCTP 228
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
D+ YNVV+N +C+ G + A L+ LP + C P+ +Y I++ C
Sbjct: 229 DIVTYNVVVNGICQEGRVDDAIEFLKN--LPSYGCEPNTVSYNIVLKGLC 276
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F + + FL M RG ++V+ +T L+ L G V+ A+ +++K
Sbjct: 344 AFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNT---LLTALCRSGEVDVAVELLHQLKDKG 400
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C P + +YN VI+ L + G +A LL +M G + PD+ TY+ + + C+
Sbjct: 401 CAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQ--PDIITYSTIAAGLCR 452
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+A M C PD+ +YN ++ ALCR G + A LL Q++ G C P + +Y
Sbjct: 351 MDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKG--CAPVLISY 408
Query: 245 TILISSYCKYG 255
+I K G
Sbjct: 409 NTVIDGLTKAG 419
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ K + L EM +G +++T ST+ L E + +A+ F +++
Sbjct: 415 LTKAGKTKEALELLNEMVSKGLQPDIITYSTIA---AGLCREDRIEDAIRAFGKVQDMGI 471
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
RP+ YN +I LC+ + A L M G C P+ TYTILI G+
Sbjct: 472 RPNTVLYNAIILGLCKRRETHSAIDLFAYM--IGNGCMPNESTYTILIEGLAYEGL 525
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
D Y + +I LC G A +L++M RC PDV TYTIL+ + CK
Sbjct: 159 DAYTCDTLIRGLCGRGRTANALAVLDEMLR--RRCVPDVVTYTILLEATCK 207
>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 680
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 144 RGNNVKGLWDFLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
+ NV +D EM SRR + +VT S + ++G+ + +A+ F +M P
Sbjct: 222 KDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGK---LKDAIGLFNKMTSENINP 278
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
DVY +N++++A C+ G +A+ L M G + PD+ TY L+ YC
Sbjct: 279 DVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIK--PDIVTYNSLMDGYC 326
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLV 185
F N +T + + + + + M RG +++T S++ + L + LV
Sbjct: 380 QIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSI---LDALCKNHLV 436
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
++A+A ++K RP++Y Y ++I+ LC+ G AR + E + + G+ V TYT
Sbjct: 437 DKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLT--VNTYT 494
Query: 246 ILISSYCKYGM 256
++I +C +G+
Sbjct: 495 VMIQGFCSHGL 505
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
E+ RR +G+LV V + +I + ++ VN+A + M R ++ Y+ +I+
Sbjct: 196 ELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGF 255
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C VG A L +M PDVYT+ IL+ ++CK G
Sbjct: 256 CIVGKLKDAIGLFNKMTSENIN--PDVYTFNILVDAFCKEG 294
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVT----CLIKVLGEEGLVNEALATFYRMKQFRCR 201
N V L MS RG V + + C IK +V++A+ F M +
Sbjct: 329 NEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIK------MVDQAMKLFKEMHHKQIF 382
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+V YN +I+ LC+ G + A L++ M G + PD+ TY+ ++ + CK
Sbjct: 383 PNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQ--PDIITYSSILDALCK 432
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ +EG V EA M + +PD+ YN +++ C V N A+ +L M
Sbjct: 282 TFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTM 341
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
G V +Y I+I+ +CK M
Sbjct: 342 SHRGV--TATVRSYNIVINGFCKIKM 365
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G +T +T T +I+ GL +EAL+ +MK C PD Y ++I +L +KA
Sbjct: 485 GYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKA 544
Query: 224 RFLLEQMELPGF 235
LL +M G
Sbjct: 545 EKLLREMITRGL 556
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T+ IK +G +++AL ++ D +Y +IN LC+VG A LL
Sbjct: 140 TITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLR 199
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
+++ G DV Y+ +I S CK
Sbjct: 200 RVD--GKLVQLDVVMYSTIIDSMCK 222
>gi|341605773|gb|AEK82989.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RFNGXAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALXKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 82
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 83 FK--PDVVTYSVVVNGLCKNG 101
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRFNGXAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALXKHG 171
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 18 HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLIDGYAKSG 66
>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
Length = 827
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G+G T LIK G++++A+ F M+ +PDV Y VI ALCR+G +
Sbjct: 400 GDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD 459
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A QM G PD Y Y LI +C +G
Sbjct: 460 DAMEKFNQMIDQGV--APDKYAYNCLIQGFCTHG 491
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 175 LIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L++ E +EAL +R + C PDV++Y++++ +LC G +A LL M
Sbjct: 165 LLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 224
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G C P+V Y +I + K G
Sbjct: 225 GAVCSPNVVAYNTVIDGFFKEG 246
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 153 DFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
D L+ M+ G + +V +TV I +EG VN+A F M Q PD+ YN
Sbjct: 216 DLLRMMAEGGAVCSPNVVAYNTV---IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNS 272
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V++ALC+ +KA L QM R P+ +TY LI Y G
Sbjct: 273 VVHALCKARAMDKAEAFLRQM--VNKRVLPNNWTYNNLIYGYSSTG 316
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G EA+ F M++ PDV ++++ +LC+ G +AR + + M + G
Sbjct: 308 LIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 367
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PDV++Y I+++ Y G
Sbjct: 368 QN--PDVFSYNIMLNGYATKG 386
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 145 GNNVKGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
G + G W KEM R + L T++ L+ L + G + EA F M
Sbjct: 311 GYSSTGQWKEAVRVFKEMRR--HSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 368
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PDV++YN+++N G L + M G PD YT+ +LI +Y GM
Sbjct: 369 NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGI--APDFYTFNVLIKAYANCGM 422
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT TV I L G +++A+ F +M PD YAYN +I C G+ KA+
Sbjct: 441 DVVTYRTV---IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAK 497
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L+ ++ G D+ ++ +I++ CK G
Sbjct: 498 ELISEIMNNGMHL--DIVFFSSIINNLCKLG 526
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + + +I L + G V +A F PD Y+++++ C VG K
Sbjct: 506 NGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEK 565
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A + + M G P+V Y L++ YCK G
Sbjct: 566 ALRVFDAMVSAGIE--PNVVVYCTLVNGYCKIG 596
>gi|357431252|gb|AET78303.1| At1g03560-like protein [Arabidopsis halleri]
Length = 161
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ V+ D+ K + R NG + + + LI LG+ G V+EA F M + C D
Sbjct: 53 KNGRVEEALDYFK--TXRFNGLAINSXFYSSLIDGLGKVGRVDEAERLFEEMSEKGCTRD 110
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
Y YN +I+A + G N+A L ++ME C VYTYTILIS K
Sbjct: 111 SYCYNALIDAFTKHGKVNEALALFKRMEEEE-GCDQTVYTYTILISGMFK 159
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 45/118 (38%), Gaps = 37/118 (31%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR---------------- 216
T LI + G V +A+ RM +PDV Y+VV+N LC+
Sbjct: 10 TVLIDGYAKSGSVEDAIRLLQRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFKTXRF 69
Query: 217 -------------------VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
VG ++A L E+M G C D Y Y LI ++ K+G
Sbjct: 70 NGLAINSXFYSSLIDGLGKVGRVDEAERLFEEMSEKG--CTRDSYCYNALIDAFTKHG 125
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P+V Y V+I+ + G+ A LL++M GF+ PDV TY+++++ CK G
Sbjct: 3 KPNVAIYTVLIDGYAKSGSVEDAIRLLQRMIDEGFK--PDVVTYSVVVNGLCKNG 55
>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 906
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTS-TVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + + + L+E+ ++G L S T CL+ L + ++EA F MK +C
Sbjct: 702 FGKVGRIDEAYLILEELMQKG---LTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKC 758
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ Y+++IN LC + FNKA ++M+ G + P+ TYT +I+ K G
Sbjct: 759 SPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLK--PNNITYTTMIAGLAKAG 811
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M VF G KG F +E+ + G + + + LI L + G E FY MK+
Sbjct: 559 MDCVFKAGEVEKGRALF-EEI--KAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKE 615
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
DV AYN VI+ C+ G +KA LLE+M+ G + P V TY ++ K
Sbjct: 616 QGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQ--PTVVTYGSVVDGLAK 669
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V W F EM + G + T T LI VL + ++EA+ F + R
Sbjct: 283 FGKVGKVDMAWKFFHEM--KAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSV 340
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P VYAYN +I G F++A LLE+ + G C P V Y +++ + G
Sbjct: 341 PCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKG--CIPSVIAYNCILTCLGRKG 392
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
L+ ++E+ N L TT L++V EG ++ AL+ MK D+ YNV
Sbjct: 225 LFHQMQEIGYEANVHLFTT-----LVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVC 279
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
I+ +VG + A +M+ G PD TYT LI CK
Sbjct: 280 IDCFGKVGKVDMAWKFFHEMKAQGL--VPDDVTYTTLIGVLCK 320
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 4/144 (2%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+N A +++ WVER H +V AR N+ L L+EMS G G ++
Sbjct: 113 VNVAFQYFRWVERKTQQAHCPEVYNAFLMVMARTRNLDYLEQILEEMSVAGFG--LSNHV 170
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
L+ + + EA M++F+ RP AY +I AL + L QM+
Sbjct: 171 SVELVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQ 230
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
G+ +V+ +T L+ + + G
Sbjct: 231 EIGYE--ANVHLFTTLVRVFAREG 252
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ L+ R+G + + C++ LG +G V EAL M+Q P++ YN++I
Sbjct: 363 YSLLERQKRKGC--IPSVIAYNCILTCLGRKGKVEEALRIHDEMRQ-DAAPNLTTYNILI 419
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ LC+ G A + + M+ G P++ T I+I CK
Sbjct: 420 DMLCKAGELEAALKVQDTMKEAGLF--PNIMTVNIMIDRLCK 459
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 165 ELVTTSTVTC------LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
EL +V C +I G G +EA + R K+ C P V AYN ++ L R G
Sbjct: 333 ELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKG 392
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A + ++M P++ TY ILI CK G
Sbjct: 393 KVEEALRIHDEMRQDA---APNLTTYNILIDMLCKAG 426
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTT--STVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F + V + L+EM +G V T S V L K+ ++EA F K
Sbjct: 632 FCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKI----DRLDEAYMLFEEAKSIG 687
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+V Y+ +I+ +VG ++A +LE++ G P+ YT+ L+ + K
Sbjct: 688 VDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGL--TPNSYTWNCLLDALVK 739
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI+ + G + + M C PD+ N ++ + + G K R L E+++
Sbjct: 521 TSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKA 580
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G PDV +Y+ILI K G
Sbjct: 581 QGL--VPDVRSYSILIHGLVKAG 601
>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
Length = 677
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
A GN K L + K+M+ G G +LVT + V + L ++A++ F MK
Sbjct: 93 AAGNWKKAL-ELCKKMTENGVGPDLVTHNIV---LSALKNGAQYSKAISYFEIMKGANVT 148
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D + N++I+ L ++G +A L M +CPPDV TYT ++ SYC YG
Sbjct: 149 SDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYG 202
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T + LI ++G ++EA +TF MK+ C PDV Y +I A G + +A L
Sbjct: 432 TKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLF 491
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++ME+ G PPD + L+ ++ K G
Sbjct: 492 KEMEVNGI--PPDAIICSSLMEAFNKGG 517
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
++ + N K ++D + + N +V ++ L+ G+ EALA F +K+
Sbjct: 200 IYGQVENCKAIFDLMVAEGVKPN--IVAYNS---LLGAYASRGMHREALAIFNLIKKNGL 254
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
RPD+ +Y ++NA R KAR + +M+ C P+ +Y LI +Y GM
Sbjct: 255 RPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNS--CKPNKVSYNALIDAYGSAGM 308
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I++ V++A F+ M+++RC+PD YN +I+A R G + A ++E M
Sbjct: 17 MIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAA 76
Query: 235 FRCPPDVYTYTILISS 250
PP TY +I++
Sbjct: 77 I--PPTRTTYNNVINA 90
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ NG + T L+ G +A F +MK+ C+P+ +YN +I+A G
Sbjct: 250 KKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGML 309
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
+A LL +ME G + PDV + + L+++
Sbjct: 310 KEAVGLLHEMEKDGIQ--PDVVSISTLLAA 337
>gi|125559578|gb|EAZ05114.1| hypothetical protein OsI_27306 [Oryza sativa Indica Group]
Length = 737
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 126 FHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLV 185
F + EVT K + R N + D ++ M + + T + L
Sbjct: 304 FRYHPREVTYKVLVDELCRENELAKAKDVMELMLKVTPDDDTRTRIYNMFLAALRVVDNP 363
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+E L M Q C+PDV N VI+ C+VG +AR +++ M L G C PDV T+T
Sbjct: 364 SEQLDVLVSMLQEGCKPDVITMNTVIHGFCKVGRAQEARRIVDDM-LNGKFCAPDVVTFT 422
Query: 246 ILISSYCKYG 255
LIS Y G
Sbjct: 423 TLISGYLGVG 432
>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
Length = 394
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + +I L + +++A +M++ C PDV Y +I+A C+VG ++AR L ++M
Sbjct: 295 TYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRM 354
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C DV Y ILI YC+
Sbjct: 355 HERG--CASDVVAYNILIRGYCR 375
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM + G T T LI+ L E N+AL F++M + +PD + Y VVI
Sbjct: 1 LLGEM--KAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGH 58
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY---CKY 254
LC++ + A EQM G C PD TYT+L+ S CK+
Sbjct: 59 LCKINKLDLAASYFEQMVQSG--CLPDKVTYTVLVHSLFKACKW 100
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCR-PDVYAYNVVINALCRVGNFNKARFLLEQME 231
T L+ L + V EA RM + R P V Y+ VI+ LC+ + A +L++M
Sbjct: 261 TVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQKMR 320
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
G C PDV TYT +I ++CK G
Sbjct: 321 RAG--CVPDVVTYTAIIDAFCKVG 342
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+E+ G++ T I L + G ++EA A +M + C PD +YNV+I +LC
Sbjct: 174 RELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLC 233
Query: 216 RVGNFNKARFLLEQ-MELPGFRCPPDVYTYTILISSYCK 253
+ ++A+ L++Q ME +C P V T+L+ CK
Sbjct: 234 KDNRVSEAKELMDQAME---RKCMPGVPVCTVLVDGLCK 269
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + + + L++M R G V T T +I + G ++EA F RM + C
Sbjct: 303 LCKADRLDDAYIVLQKMRRAGCVPDVVTYTA--IIDAFCKVGRLDEARELFQRMHERGCA 360
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
DV AYN++I CR ++A ++E+M G
Sbjct: 361 SDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGI 394
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 154 FLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+EM +G+ ELVT +TV + + G +++AL+ R+K P Y+ +I+
Sbjct: 106 IFEEMLSKGHSPELVTYATV---VNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLID 162
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ +AR L E DV YT IS CK G
Sbjct: 163 GLCKHDRHEEARELFEMAAGD----VQDVIVYTSFISGLCKAG 201
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A + F +M Q C PD Y V++++L + + + + E+M G P++ TY +
Sbjct: 68 AASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGH--SPELVTYATV 125
Query: 248 ISSYCKYG 255
++ YCK G
Sbjct: 126 VNGYCKAG 133
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L ++ V+EA + + +C P V V+++ LC+ +A +LE+M G
Sbjct: 228 IIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAG 287
Query: 235 FRCPPDVYTYTILISSYCK 253
R P V TY+ +I CK
Sbjct: 288 DR-APSVVTYSAVIDGLCK 305
>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L M RG + + LI L +EG EA++ + +M + C+P++ Y+V+++
Sbjct: 349 LLSSMEERGYH--LNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDG 406
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LCR G N+A+ +L +M G C P+ YTY+ L+ + K G+
Sbjct: 407 LCREGKPNEAKEILNRMIASG--CLPNAYTYSSLMKGFFKTGL 447
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK L + V+ A+ F M + +C PD Y Y +++ LC+ ++A LL++M+ G
Sbjct: 193 VIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEG 252
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P Y +LI CK G
Sbjct: 253 --CSPSPVIYNVLIDGLCKKG 271
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L +E ++EA+ M+ C P YNV+I+ LC+ G+ + L++ M
Sbjct: 224 TYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNM 283
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L G C P+ TY LI C G
Sbjct: 284 FLKG--CVPNEVTYNTLIHGLCLKG 306
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
KEM + G +V LI L G V EA+ + +M +PD AY+ +I LC
Sbjct: 456 KEMDKTGCSRNKFCYSV--LIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLC 513
Query: 216 RVGNFNKARFLLEQM---ELPGFRCPPDVYTYTILISSYC 252
+G+ + A L +M E P + PDV TY IL+ C
Sbjct: 514 GIGSMDAALKLYHEMLCQEEP--KSQPDVVTYNILLDGLC 551
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
+G L T + L+K + GL EA+ + M + C + + Y+V+I+ LC VG
Sbjct: 425 ASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVK 484
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A + +M G + PD Y+ +I C G
Sbjct: 485 EAMMVWSKMLTIGIK--PDTVAYSSIIKGLCGIG 516
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
+ LW ++M+ +G + +V L+ L EG NEA RM C P
Sbjct: 376 GKAEEAMSLW---RKMAEKGCKPNIVVYSV--LVDGLCREGKPNEAKEILNRMIASGCLP 430
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ Y Y+ ++ + G +A + ++M+ G C + + Y++LI C G
Sbjct: 431 NAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTG--CSRNKFCYSVLIDGLCGVG 481
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRM---KQFRCRPDVYAYNVVINALCRVGNFNKARF 225
T + +IK L G ++ AL ++ M ++ + +PDV YN++++ LC + ++A
Sbjct: 502 TVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVD 561
Query: 226 LLEQMELPGFRCPPDVYT 243
LL M G C PDV T
Sbjct: 562 LLNSMLDRG--CDPDVIT 577
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+ ++N+VI ALC++ ++A + M P +C PD YTY L+ CK
Sbjct: 185 PNGLSFNLVIKALCKLRFVDRAIEVFRGM--PERKCLPDGYTYCTLMDGLCK 234
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C P+ YN +I+ LC G +KA LLE+M +C P+ TY LI+ K
Sbjct: 288 CVPNEVTYNTLIHGLCLKGKLDKAVSLLERM--VSSKCIPNDVTYGTLINGLVK 339
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L +G +++A++ RM +C P+ Y +IN L + A LL M
Sbjct: 294 TYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSM 353
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G+ + + Y++LIS K G
Sbjct: 354 EERGYHL--NQHIYSVLISGLFKEG 376
>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
Length = 987
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ T LI+ L E V EAL + M Q C +++ Y ++I LC+ G + AR LL++M
Sbjct: 251 SYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRIHDARGLLDEM 310
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L G P V+TY +I YCK G
Sbjct: 311 PLRGV--VPSVWTYNAMIDGYCKSG 333
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G ++T T T L+ + G + A +M C+ D+Y Y+V++ ALC+ N+A
Sbjct: 590 GVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEA 649
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+L+QM + G +C ++ YTI+IS K G
Sbjct: 650 LSILDQMTVSGVKC--NIVAYTIIISEMIKEG 679
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F++ N +++M G + T +V L++ L ++ +NEAL+ +M +
Sbjct: 605 FSKAGNTDFAAVLIEKMVNEGCKADLYTYSV--LLQALCKQKKLNEALSILDQMTVSGVK 662
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ AY ++I+ + + G + A+ L +M G + P TYT+ ISSYCK G
Sbjct: 663 CNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHK--PSATTYTVFISSYCKIG 714
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE I ARG L EM RG + + T +I + G + +AL
Sbjct: 295 CKEGRIHDARG--------LLDEMPLRG--VVPSVWTYNAMIDGYCKSGRMKDALGIKAL 344
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
M+Q C PD + YN +I LC G ++A LL GF P V T+T LI+ YCK
Sbjct: 345 MEQNGCNPDDWTYNSLIYGLCG-GKLDEAEELLNGAIARGF--TPTVITFTNLINGYCK 400
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LIK L +EG +++A M P V+ YN +I+ C+ G A + ME
Sbjct: 288 TLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQ 347
Query: 233 PGFRCPPDVYTYTILISSYC 252
G C PD +TY LI C
Sbjct: 348 NG--CNPDDWTYNSLIYGLC 365
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI + +++AL M C+ D+ AY V+IN L + +A+ L
Sbjct: 387 TVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETL 446
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
+M G P+V YT +I YCK GM
Sbjct: 447 NEMFANGL--APNVVIYTSIIDGYCKVGM 473
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L ++ +++A+A +M++ P V AY +I C+ F+ A L E M
Sbjct: 495 TYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMM 554
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G PD Y +L + CK G
Sbjct: 555 EKNGL--TPDEQAYNVLTDALCKSG 577
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
++ TS + KV G+V AL F M+ C P+ + Y +I L + +KA
Sbjct: 459 VIYTSIIDGYCKV----GMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMA 514
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCK 253
L+ +M+ G P V YT LI CK
Sbjct: 515 LITKMQEDGI--TPGVIAYTTLIQGQCK 540
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I + +EG + A + F M +P Y V I++ C++G +A L+ +ME
Sbjct: 669 TIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMER 728
Query: 233 PGFRCPPDVYTYTILISS 250
G PDV TY I I+
Sbjct: 729 DGV--TPDVVTYHIFING 744
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T T +I ++G + A F +++ + D Y N ++ CR + KA
Sbjct: 174 GLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKA 233
Query: 224 RFLLEQMELPGFRCPPDVYTYTILI 248
+LL M L G C + Y+YTILI
Sbjct: 234 CWLLMMMPLMG--CRRNEYSYTILI 256
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
EM G+ TT TV I + G + EA M++ PDV Y++ IN
Sbjct: 687 LFNEMISSGHKPSATTYTV--FISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFING 744
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+G ++A L++M C P+ +TY +L+ + K +
Sbjct: 745 CGHMGYMDRAFSTLKRM--VDASCEPNCWTYWLLLKHFLKMSL 785
>gi|399107200|gb|AFP20364.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 116 RFNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 175
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 176 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 204
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 25 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 84
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 85 FK--PDVVTYSVVVNGLCKNG 103
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 39 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 96
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 97 NGLCKNGRVEEALDYFQTCRFNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 154
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 155 CTRDSYCYNALIDALTKHG 173
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 20 HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLIDGYAKSG 68
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 13/171 (7%)
Query: 86 EADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARG 145
E D + L+ G + N +KV ++A + Y + + + VT + F +
Sbjct: 145 EPDKFTFSALITG---WCNARKV----DEALKLYKEILTSSSWKPDVVTYTALIDGFCKS 197
Query: 146 NNVKGLWDFLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
N++ L M R+ +VT S+ L+ L + G +++AL F RM C P+V
Sbjct: 198 GNLEKAMKMLGVMEGRKCVPNVVTYSS---LLHGLCKAGDLDQALDLFRRMTSKGCVPNV 254
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +I+ LC + AR L+++M CPPD +Y L+ YC+ G
Sbjct: 255 VTYTTLIHGLCAAHKVDAARLLMDEM--TATCCPPDTVSYNALLDGYCRLG 303
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T +I + + +ALA F +M++F P+ YNVV+N LC+ +KA +L
Sbjct: 6 TVVTWTIIIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCKARLTSKAYEVL 64
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++M G PD+ TY+ +I+ +CK G
Sbjct: 65 KEMR-DGKSVAPDLVTYSTVINGFCKQG 91
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
++R +F++EM R T + LI L + G V+ A+ M R
Sbjct: 370 YSRAKRFVEAAEFIQEMIARNVAP--NAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVE 427
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P V +N VI ALCR+G+ ++A LL M G P + TYT L+ + + G
Sbjct: 428 PSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLE--PGMVTYTTLLEGFSRTG 479
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 152 WDFLKEMSRRGNG---ELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAY 207
++ LKEM R G +LVT STV I ++G ++ A M + PDV Y
Sbjct: 61 YEVLKEM-RDGKSVAPDLVTYSTV---INGFCKQGEMDRACEILREMVTRDGIAPDVVTY 116
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
V++ LCR G ++A ++ +M+L G PD +T++ LI+ +C
Sbjct: 117 TSVVDGLCRDGKMDRACEMVREMKLKGVE--PDKFTFSALITGWC 159
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++ D + M+ +G V T T LI L V+ A M C
Sbjct: 229 LCKAGDLDQALDLFRRMTSKGCVPNVVTYTT--LIHGLCAAHKVDAARLLMDEMTATCCP 286
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
PD +YN +++ CR+G +A+ L ++M C PD TYT L+ +C
Sbjct: 287 PDTVSYNALLDGYCRLGRIEEAKQLFKEMATKS--CLPDRITYTCLVRGFC 335
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + EA F M C PD Y ++ C +ARFLLE M+ PDV
Sbjct: 303 GRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAA-GIDPDVV 361
Query: 243 TYTILISSY 251
TY+I+++ Y
Sbjct: 362 TYSIVVAGY 370
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ Y+ VIN C+ G ++A +L +M + PDV TYT ++ C+ G
Sbjct: 75 PDLVTYSTVINGFCKQGEMDRACEILREM-VTRDGIAPDVVTYTSVVDGLCRDG 127
>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
thaliana]
Length = 1184
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L +EG ++ A + M + +P+++ YN ++N LC+ GN +A L+ +
Sbjct: 901 TYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 960
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G D TYT L+ +YCK G
Sbjct: 961 EAAGLNA--DTVTYTTLMDAYCKSG 983
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EM R+G L T T LI + G + A FY M PDV Y +I+ C+
Sbjct: 784 EMIRQGI--LPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQ 841
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+G+ +A L +M G PD T+T LI+ YCK G
Sbjct: 842 IGDMVEAGKLFHEMFCKGLE--PDSVTFTELINGYCKAG 878
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+V +YN+VI+ +C++G +A LL MEL G+ PDV +Y+ +++ YC++G
Sbjct: 688 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGY--TPDVISYSTVVNGYCRFG 738
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + +++ F EM R V T T +I + G + EA F+ M
Sbjct: 804 FCKRGDIRAASKFFYEMHSRDITPDVLT--YTAIISGFCQIGDMVEAGKLFHEMFCKGLE 861
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD + +IN C+ G+ A + M G C P+V TYT LI CK G
Sbjct: 862 PDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG--CSPNVVTYTTLIDGLCKEG 913
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRG--NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ R + +W ++ M R+G + S + L ++ + EA F M +
Sbjct: 734 YCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICK----LAEAEEAFSEMIRQG 789
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y +I+ C+ G+ A +M PDV TYT +IS +C+ G
Sbjct: 790 ILPDTVVYTTLIDGFCKRGDIRAASKFFYEMH--SRDITPDVLTYTAIISGFCQIG 843
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I + + G + EA M+ PDV +Y+ V+N CR G +K L+E M+ G
Sbjct: 695 VIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG 754
Query: 235 FRCPPDVYTYTILISSYCK 253
+ P+ Y Y +I C+
Sbjct: 755 LK--PNSYIYGSIIGLLCR 771
>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ LI LG+ G V+EA F M + C D Y YN +I+AL + G +A L ++ME
Sbjct: 439 SSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEK 498
Query: 233 PGFRCPPDVYTYTILISSYCK 253
G C VYTYTILIS K
Sbjct: 499 EG--CDQTVYTYTILISGLFK 517
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L+T LI+ G G+V E L + RMK+ P +Y +N ++N L A
Sbjct: 185 GFLMTVFAANSLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLVNSMFIESA 244
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ E ME + PDV +Y +I YCK G
Sbjct: 245 ERVFEVMECG--KIGPDVVSYNTMIKGYCKAG 274
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM RG + + +I L ++G E + F M + C+ +V Y +I+A
Sbjct: 319 QEMEERGLE--IPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYG 376
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ GN N+A L E+M+ GF PD TY ++++ CK G
Sbjct: 377 KNGNVNEAINLFERMKGEGFE--PDDVTYGVIVNGLCKSG 414
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 59/154 (38%), Gaps = 42/154 (27%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+G + G V+G F + M+++G + T LI G+ G VNEA+ F RMK
Sbjct: 337 IGGLCKDGRTVEGSSVF-ENMNKKGCK--ANVAIYTALIDAYGKNGNVNEAINLFERMKG 393
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKA---------------------------------- 223
PD Y V++N LC+ G ++A
Sbjct: 394 EGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDE 453
Query: 224 --RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+F E +E CP D Y Y LI + K G
Sbjct: 454 AEKFFEEMVERG---CPQDSYCYNALIDALAKSG 484
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK + G +A+ F M++ PD Y +I A GNF+ L ++ME G
Sbjct: 266 MIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERG 325
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PP + Y+++I CK G
Sbjct: 326 LEIPP--HAYSLVIGGLCKDG 344
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + N K + +M +R N E + +T LI+ EG + L + M++
Sbjct: 270 YCKAGNTKKAMEKFTDMEKR-NLEPDKITYLT-LIQACYSEGNFDSCLHLYQEMEERGLE 327
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+AY++VI LC+ G + + E M G C +V YT LI +Y K G
Sbjct: 328 IPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKG--CKANVAIYTALIDAYGKNG 379
>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Glycine max]
Length = 729
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 138 MGIVFARG--NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
M I+ RG N K ++D EM G T T LI+ + +V+E F M
Sbjct: 190 MSILLKRGRTNMAKEVYD---EM-LGTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREM 245
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP---PDVYTYTILISSYC 252
+ F C DV YN +++ LCR G AR L+ M G +C P+V TYT LI YC
Sbjct: 246 ESFNCDADVVTYNTLVDGLCRAGKVRIARNLVNGM---GKKCEGLNPNVVTYTTLIRGYC 302
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL-VTTST 171
+KA F+ W ++ F H + M + R N+ +FL + + G + +
Sbjct: 92 SKALRFFKWTQQK-GFSHTPESYFIMLEILGRERNLNVARNFLFSIEKHSKGTVKLEDRF 150
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
LI+ E GL E++ F MK P V +N +++ L + G N A+ + ++M
Sbjct: 151 FNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEVYDEM- 209
Query: 232 LPGFRCPPDVYTYTILISSYCKYGM 256
L + PD TY +LI +CK M
Sbjct: 210 LGTYGVSPDTCTYNVLIRGFCKNSM 234
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + + D L+ M G G T T +I + G ++EAL F MK+FR
Sbjct: 336 LCEAHKLDKMKDVLERMKSDG-GFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIP 394
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQM-----ELPGFRCPPDVYTYTILISSYCKYG 255
D +Y+ +I +LC+ G+++ A L +++ L F P +Y + S C++G
Sbjct: 395 ADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEILLSKFGSKPLAASYNPIFESLCEHG 453
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R V+ + + M ++ G T T LI+ + V EAL M +
Sbjct: 264 LCRAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLK 323
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++ YN ++ LC +K + +LE+M+ G PD +T+ +I +C G
Sbjct: 324 PNMITYNTLVKGLCEAHKLDKMKDVLERMKSDG-GFSPDTFTFNTIIHLHCCAG 376
>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 562
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
++ RR +G+L+ + V +I + ++ L N+A + M R PDV YN +IN
Sbjct: 227 QLLRRVDGKLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGF 286
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C VG A L +M PDVYT+ IL+ ++CK G
Sbjct: 287 CIVGKLKDAIGLFNKMTSENIN--PDVYTFNILVDAFCKEG 325
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + +A+ F +M PDVY +N++++A C+ G +A+ L M G + PDV
Sbjct: 290 GKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIK--PDVV 347
Query: 243 TYTILISSYC 252
TY L+ YC
Sbjct: 348 TYNSLMDRYC 357
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ +EG V EA M + +PDV YN +++ C V NKA+ + M
Sbjct: 313 TFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTM 372
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
G +V +Y+I+I+ +CK M
Sbjct: 373 SHRGV--TANVRSYSIMINRFCKIKM 396
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++K RP+++ Y ++I+ LC+ G AR + E + + G+ V TYT++I +C
Sbjct: 457 QLKDQGIRPNMFTYTILIDGLCKGGRLEDARNIFEDLLVKGYNIT--VNTYTVMIHGFCN 514
Query: 254 YGM 256
G+
Sbjct: 515 KGL 517
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 16/124 (12%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N V MS RG V + ++ +I + +V++A+ F M + P+V
Sbjct: 360 NEVNKAKSIFNTMSHRGVTANVRSYSI--MINRFCKIKMVDQAMKLFKEMHHKQIFPNVI 417
Query: 206 AYNVVINALCRVGNFNKARFLLEQM--------------ELPGFRCPPDVYTYTILISSY 251
Y+ +I+ LC+ G + A L ++M +L P+++TYTILI
Sbjct: 418 TYSSLIDGLCKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGL 477
Query: 252 CKYG 255
CK G
Sbjct: 478 CKGG 481
>gi|224576639|gb|ACN56993.1| At1g03560-like protein [Capsella grandiflora]
Length = 196
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G ++
Sbjct: 86 NGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDE 145
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A L ++ME C VYTYTILIS K
Sbjct: 146 AMXLFKRMEEEE-GCDQTVYTYTILISGMFK 175
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +NE A F M +P+V Y V+I+ + G+ A LL +M GF+ PDV
Sbjct: 1 GKLNEGYAVFENMIXKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK--PDVV 58
Query: 243 TYTILISSYCKYG 255
TY+++++ CK G
Sbjct: 59 TYSVVVNGLCKNG 71
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 37/118 (31%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC----------------- 215
T LI + G V +A+ +RM +PDV Y+VV+N LC
Sbjct: 26 TVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXF 85
Query: 216 ------------------RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G ++A L E+M G C D Y Y LI + K+G
Sbjct: 86 NGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKG--CTRDSYCYNALIDALTKHG 141
>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 554
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E TCK G K L EM +G + T V ++ + +EG V++A+
Sbjct: 201 EATCKRSG--------YKQAMKLLDEMRDKGCTPDIVTYNV--VVNGICQEGRVDDAIEF 250
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+ + C P+ +YN+V+ LC + A L+ +M G CPP+V T+ +LIS
Sbjct: 251 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKG--CPPNVVTFNMLISFL 308
Query: 252 CKYGM 256
C+ G+
Sbjct: 309 CRKGL 313
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI+ L G ALA M + RC PDV Y +++ A C+ + +A LL++M
Sbjct: 160 TYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEM 219
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C PD+ TY ++++ C+ G
Sbjct: 220 RDKG--CTPDIVTYNVVVNGICQEG 242
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ + EM ++G V T + LI L +GLV AL ++ ++ C P+ +YN +++
Sbjct: 284 ELMGEMGQKGCPPNVVTFNM--LISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLH 341
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A C+ +KA L+ M G C PD+ +Y L+++ C+ G
Sbjct: 342 AFCKQKKMDKAMAFLDLMVSRG--CYPDIVSYNTLLTALCRSG 382
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
RG L L EM RR V T T+ L++ + +A+ M+ C P
Sbjct: 170 GRGRTANALA-VLDEMLRRRCVPDVVTYTI--LLEATCKRSGYKQAMKLLDEMRDKGCTP 226
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
D+ YNVV+N +C+ G + A L+ LP + C P+ +Y I++ C
Sbjct: 227 DIVTYNVVVNGICQEGRVDDAIEFLKN--LPSYGCEPNTVSYNIVLKGLC 274
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 49/113 (43%), Gaps = 20/113 (17%)
Query: 153 DFLKEMSRRGNGE----LVTTS------TVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
D L+ + RRG + LV ++ T LIK L G EA R C P
Sbjct: 70 DRLRSLVRRGELDEALRLVGSARRPDAGTCAALIKKLSASGRTAEA-----RRVLAACGP 124
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
DV AYN ++ C G + AR L+ +M + PD YTY LI C G
Sbjct: 125 DVMAYNAMVAGYCGAGQLDAARRLVAEMPV-----EPDAYTYNTLIRGLCGRG 172
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F + + FL M RG ++V+ +T L+ L G V+ A+ +++K
Sbjct: 342 AFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNT---LLTALCRSGEVDVAVELLHQLKDKG 398
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C P + +YN VI+ L + G +A LL +M G + PD+ TY+ + + C+
Sbjct: 399 CAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQ--PDIITYSTIAAGLCR 450
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y YN +I LC G A +L++M RC PDV TYTIL+ + CK
Sbjct: 156 PDAYTYNTLIRGLCGRGRTANALAVLDEMLR--RRCVPDVVTYTILLEATCK 205
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+A M C PD+ +YN ++ ALCR G + A LL Q++ G C P + +Y
Sbjct: 349 MDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKG--CAPVLISY 406
Query: 245 TILISSYCKYG 255
+I K G
Sbjct: 407 NTVIDGLTKAG 417
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ K + L EM +G +++T ST+ L E + +A+ F +++
Sbjct: 413 LTKAGKTKEALELLNEMVSKGLQPDIITYSTIA---AGLCREDRIEDAIRAFGKVQDMGI 469
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
RP+ YN +I LC+ + A L M G C P+ TYTILI G+
Sbjct: 470 RPNTVLYNAIILGLCKRRETHSAIDLFAYM--IGNGCMPNESTYTILIEGLAYEGL 523
>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
Length = 826
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++ AL F +M + +C+P+V Y +IN CR G+ ++A E+M G + P+V TY
Sbjct: 571 LHNALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLK--PNVVTY 628
Query: 245 TILISSYCKYG 255
TILI +CK G
Sbjct: 629 TILIGCFCKEG 639
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK + G++N+AL RMK PD + Y+ +I+ + + + A L QM
Sbjct: 526 MIKGYCKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQ- 584
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+C P+V TYT LI+ +C+ G
Sbjct: 585 -KCKPNVVTYTSLINGFCRTG 604
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
N K + L EM RG V ++ + G E T + + C PD+
Sbjct: 290 NFKAVDGLLVEMKERGVD--VNVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEPDITT 347
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN +I+ CR G ++A LLE G P+ +YT LI YCK G
Sbjct: 348 YNTLISGSCRDGKVHEAEELLEHAIKRGL--SPNKLSYTPLIHVYCKQG 394
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+N+A E YH ++ + + C + + V+ +EM +R +
Sbjct: 150 VNRALELYHIAYDIHNYLPDVIACNALLNALIQQKKVEIARKVYEEMVKRDG--CWDNYS 207
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
V +++ L +E V E C P++ YN +++ + G+ +A L ++++
Sbjct: 208 VCIMVRGLCKERKVEEGRKLINDRWGKGCIPNIVFYNTLVDGYWKRGDVERANGLFKELK 267
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
+ GF P TY I+I+ CK
Sbjct: 268 MKGFL--PTTETYGIMINGLCK 287
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 43/115 (37%), Gaps = 33/115 (28%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM---- 230
L+ L G V+ AL +M + PD YNV++N LC+ G + A+ LL +M
Sbjct: 421 LVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNGLCKKGRLSAAKLLLVEMLHQN 480
Query: 231 -ELPGFRCP----------------------------PDVYTYTILISSYCKYGM 256
L F P V Y +I YCK+GM
Sbjct: 481 LSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGVVGYNAMIKGYCKFGM 535
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI G + A TF M+ +P+V Y ++I C+ G +KA E M
Sbjct: 592 TYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNVVTYTILIGCFCKEGKISKACSFFELM 651
Query: 231 ELPGFRCPPDVYTYTILISS 250
L RC P+ T+ LI+
Sbjct: 652 LLN--RCIPNDVTFNYLING 669
>gi|15238810|ref|NP_197340.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635760|sp|Q94JX6.2|PP391_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g18390, mitochondrial; Flags: Precursor
gi|332005166|gb|AED92549.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 459
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 5/144 (3%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
N + F++W + + +E+ A + +W LK+M ++ T+
Sbjct: 92 NDSLRFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLD--ISGETL 149
Query: 173 TCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+I+ G+ G V++A+ F + K C+ V YN +++ALC V F+ A L+ +M
Sbjct: 150 CFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYALIRRMI 209
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
G + PD TY IL++ +C G
Sbjct: 210 RKGLK--PDKRTYAILVNGWCSAG 231
>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 625
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ L ++ L + + +M + +++ YNV+I+A C+ G+ KA LL +ME
Sbjct: 169 TVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEME- 227
Query: 233 PGFRCP-PDVYTYTILISSYCKYGMQ 257
+C PD++TY LIS YCK GM
Sbjct: 228 --SKCVFPDLFTYNTLISLYCKKGMH 251
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
A+ +W K+M+R G + V LI + G V +A M+
Sbjct: 175 LAKDRLTDMVWKVYKKMARIGVEANIHVYNV--LIHACCKSGDVEKADNLLSEMESKCVF 232
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD++ YN +I+ C+ G +A + ++ME G + PD+ TY LI +CK G
Sbjct: 233 PDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIK--PDIVTYNSLIHGFCKEG 284
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI + ++G+ EAL+ RM++ +PD+ YN +I+ C+ G +A L +++
Sbjct: 237 TYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEI 296
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
P+ TYT LI YC+
Sbjct: 297 R----DATPNHVTYTTLIDGYCR 315
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + + R N++ +EM G T T +++ L E G + +A
Sbjct: 302 NHVTYTTLIDGYCRLNDLDQALRLREEM--EAQGLYPTVVTYNSILRKLCEIGRIRDANK 359
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M + + PD N +INA C++G+ A + +M G + D +TY LI
Sbjct: 360 LLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKL--DQFTYKALIHG 417
Query: 251 YCK 253
+CK
Sbjct: 418 FCK 420
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 154 FLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
L EMS + + VTC LI + G + AL RM + + D + Y +I
Sbjct: 360 LLNEMSEKK----IEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALI 415
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ C++ + A+ LL M GF P TY+ L+ YC
Sbjct: 416 HGFCKIREMDGAKELLLSMLDAGF--SPSYCTYSWLVDGYC 454
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI +EG + EA+ F ++ P+ Y +I+ CR+ + ++A L E+M
Sbjct: 272 TYNSLIHGFCKEGRMREAMRLFKEIRD--ATPNHVTYTTLIDGYCRLNDLDQALRLREEM 329
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G P V TY ++ C+ G
Sbjct: 330 EAQGLY--PTVVTYNSILRKLCEIG 352
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI +++AL M+ P V YN ++ LC +G A LL +M
Sbjct: 305 TYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEM 364
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ PD T LI++YCK G
Sbjct: 365 SEK--KIEPDNVTCNTLINAYCKIG 387
>gi|399107202|gb|AFP20365.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G B+
Sbjct: 118 NGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVBE 177
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISS 250
A L ++ME C VYTYTILIS
Sbjct: 178 AMXLFKRMEEEE-GCDQTVYTYTILISG 204
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 25 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 84
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ DV TY+++++ CK G
Sbjct: 85 FK--XDVVTYSVVVNGLCKNG 103
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM + DV Y+VV+
Sbjct: 39 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKXDVVTYSVVV 96
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 97 NGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 154
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 155 CTRDSYCYNALIDALTKHG 173
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 20 HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLIDGYAKSG 68
>gi|341605743|gb|AEK82974.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605753|gb|AEK82979.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605831|gb|AEK83018.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RFNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 82
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 83 FK--PDVVTYSVVVNGLCKNG 101
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRFNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 18 HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLIDGYAKSG 66
>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 418
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE +R + GL+ + + NG + T T LI + G ++ A+ + +
Sbjct: 217 CKE-----SRMDEANGLFGEMLD-----NGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQ 266
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M PDV YN +I LC+ G+ +AR+LL++M G + PD TYT LI CK
Sbjct: 267 MLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLK--PDKITYTTLIDGSCKE 324
Query: 255 G 255
G
Sbjct: 325 G 325
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193
TC+ + + K +W F KE+ G + L+ +EG + A + F
Sbjct: 103 TCRNVLEHLMKXKYFKLVWGFYKEILECGYP--ASLYFFNILMHRFCKEGEMRLAQSVFD 160
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ ++ RP V ++N ++N ++G+ ++ L M G + PDVYTY++LI+ CK
Sbjct: 161 AITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQ--PDVYTYSVLINGLCK 218
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EMSR+G T T LI +EG + A RM + R D Y +I
Sbjct: 298 LLDEMSRKGLKP--DKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFG 355
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G A +L +M G + PD TYT++++ +CK G
Sbjct: 356 LCQEGRAVDAEKMLREMLRVGLK--PDDETYTMIMNEFCKKG 395
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++E M+ +PDVY Y+V+IN LC+ ++A L +M G P+
Sbjct: 185 GDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGL--VPNGV 242
Query: 243 TYTILISSYCKYG 255
T+T LI +CK G
Sbjct: 243 TFTTLIDGHCKNG 255
>gi|341605689|gb|AEK82947.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
B+A L ++ME C VYTYTILIS
Sbjct: 174 BEAMTLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 82
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ DV TY+ +++ CK G
Sbjct: 83 FK--XDVVTYSXVVNGLCKNG 101
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+A+ +V+ L M G ++VT S V + L + G V EAL F +
Sbjct: 62 YAKSGSVEDAIRLLHRMIDEGFKXDVVTYSXV---VNGLCKNGRVEEALDYFQTCRFNGL 118
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ Y+ +I+ L + G ++A L E+M G C D Y Y LI + K+G
Sbjct: 119 AINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG--CTRDSYCYNALIDALTKHG 171
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 18 HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLIDGYAKSG 66
>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 588
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G +T T LI+ L EG + EAL F +M +P+V Y +IN LC+VGN + A
Sbjct: 135 GHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAA 194
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LL ME C P+V ++ LI S CK
Sbjct: 195 IRLLRSMEQG--NCQPNVVVFSTLIDSLCK 222
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 154 FLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
EM RG +LVT T++ L + +++A+A ++ PD+ Y +++
Sbjct: 407 LFHEMVARGQIPDLVTYRTLS---DYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILD 463
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+CR G AR L + G + P+V+TY I+I CK G+
Sbjct: 464 GMCRAGELEDARDLFSNLSSKGLQ--PNVWTYNIMIHGLCKQGL 505
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 149 KGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
K ++ F +EMSR+ EL T T LI L G + +A++ F+ M PD+ Y
Sbjct: 368 KAMYLF-EEMSRQ---ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTY 423
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ + LC+ + +KA LL+ +E G PD+ YT ++ C+ G
Sbjct: 424 RTLSDYLCKNRHLDKAMALLKAIE--GSNWDPDIQIYTTILDGMCRAG 469
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+ A+ F M C +V +YN +IN C++ + +KA +L E+M P+ TY
Sbjct: 331 VDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELT--PNTVTY 388
Query: 245 TILISSYCKYG 255
LI C G
Sbjct: 389 NTLIHGLCHVG 399
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L ++ V EA F M P++ YN +I+ LC++ + L+ +M
Sbjct: 216 LIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEM--VD 273
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
+ PDV+T ++ + CK GM
Sbjct: 274 SKIMPDVFTLNTVVDALCKEGM 295
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EAL+TF RM + P +N ++ ++ + + + L QM+ F PPDVYT
Sbjct: 51 LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMD--SFGIPPDVYTL 108
Query: 245 TILISSYC 252
I+I+S C
Sbjct: 109 AIVINSLC 116
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+ +I L V+ A + ++ + +PD + +I LC G +A L ++M
Sbjct: 107 TLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKM 166
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF+ P+V TY LI+ CK G
Sbjct: 167 IGEGFQ--PNVVTYGTLINGLCKVG 189
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G + A+ M+Q C+P+V ++ +I++LC+ +A + +M G
Sbjct: 181 LINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKG 240
Query: 235 FRCPPDVYTYTILISSYCK 253
P++ TY LI CK
Sbjct: 241 IS--PNIVTYNSLIHGLCK 257
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++A+ F M + P+ YN +I+ LC VG A L +M G PD+ TY
Sbjct: 366 VDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQ--IPDLVTY 423
Query: 245 TILISSYCK 253
L CK
Sbjct: 424 RTLSDYLCK 432
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ D +S +G V T + +I L ++GL+ EA F M + C
Sbjct: 465 MCRAGELEDARDLFSNLSSKGLQPNVWTYNI--MIHGLCKQGLLAEASKLFSEMNKNGCS 522
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
P+ YN++ R + LLE+M GF DV T T+L+ G+
Sbjct: 523 PNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSV--DVSTTTLLVGMLSDDGLD 576
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
M + PDV+ N V++ALC+ G +A +++ M G P+V TY L+ +C
Sbjct: 270 EMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVE--PNVVTYNALMDGHC 326
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
L+ +M F PDVY +VIN+LC + + A L ++ G + PD T+T LI
Sbjct: 90 LSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQ--PDATTFTTLI 147
Query: 249 SSYCKYG 255
C G
Sbjct: 148 RGLCVEG 154
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T ++ + G + +A F + +P+V+ YN++I+ LC+ G +A L +M
Sbjct: 459 TTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNK 518
Query: 233 PGFRCPPDVYTYTILISSYCK 253
G C P+ TY ++ + +
Sbjct: 519 NG--CSPNDCTYNLITRGFLR 537
>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
Length = 700
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I L + ++ +A +M++ C P++Y YN +I LC V +A L+ M
Sbjct: 360 TYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLM 419
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E G PP++YTYTIL CK
Sbjct: 420 EQGGV--PPNIYTYTILTHGLCK 440
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 73/205 (35%), Gaps = 38/205 (18%)
Query: 88 DNIANNVLV-LGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGN 146
DN N++ L P A + A F+ W ++ + HN M + R
Sbjct: 171 DNFLNSMAQDLNPDAVVKVLNLQTDAQNALRFFQWADKQEGYDHNTDAYFTMIDILGRAK 230
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY- 205
L L++M + G +T S + + G G E+L F MK+ P +
Sbjct: 231 MFTELQSLLQKMQTQ--GREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLID 288
Query: 206 -AYNVVINALCRVGNFNKARFLLEQMELPGFRC--------------------------- 237
AYN V+ +L + + A L QM G C
Sbjct: 289 TAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDD 348
Query: 238 ------PPDVYTYTILISSYCKYGM 256
PDV TYTI+IS+ CK M
Sbjct: 349 MIQNNYAPDVVTYTIVISALCKRKM 373
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG T T +I+ + + +A+ M Q PDV Y +VI+ALC+ +
Sbjct: 317 NGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQ 376
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYC 252
A +L++M G C P++YTY LI C
Sbjct: 377 AYGVLQKMRENG--CEPNIYTYNALIQGLC 404
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 45/114 (39%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
AR N K F + M RG + S I L G + EA A Y M
Sbjct: 543 LARVGNHKDASIFYRRMKDRGFA--YSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYS 600
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++ YN +I CR G + A +L M G PD +Y ILI + G
Sbjct: 601 PNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGI--GPDTGSYNILIKEFHNQG 652
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
++ + L++M R NG T LI+ L EAL M+Q P++Y Y
Sbjct: 374 IEQAYGVLQKM--RENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTY 431
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++ + LC++ ++A+ + + G + P+ TY L++ YC+
Sbjct: 432 TILTHGLCKLRRLDRAKEMFNEALARGLK--PNRVTYNTLLNGYCR 475
>gi|225461712|ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Vitis vinifera]
Length = 464
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R N + ++ KEM N + + + LI L + G +E M++ C+
Sbjct: 229 LCRVNELSLAFELKKEMV--ANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCK 286
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD YN +I+ C +F A +LE+M G C PDV +Y ++IS CK G
Sbjct: 287 PDTVTYNAMISGFCNEKDFEAAYGVLEEMVAKG--CKPDVISYNVIISGLCKEG 338
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L+EM R NG T T +I E A M C+PDV +YNV+I+ L
Sbjct: 277 LEEM--RENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVAKGCKPDVISYNVIISGL 334
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
C+ G + +A L E M P C PDV +Y IL C+ GMQ
Sbjct: 335 CKEGKWREANDLFEDM--PRRGCTPDVGSYRILFDGLCE-GMQ 374
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+ VT M F + + + L+EM +G V + V +I L +EG EA
Sbjct: 288 DTVTYNAMISGFCNEKDFEAAYGVLEEMVAKGCKPDVISYNV--IISGLCKEGKWREAND 345
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F M + C PDV +Y ++ + LC FN+A F+L++M G+ P + T + +
Sbjct: 346 LFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFILDEMVFKGY--APKSASKTKFVEA 403
Query: 251 YCKYG 255
C+ G
Sbjct: 404 LCQEG 408
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 36/112 (32%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCR--------------------------------- 201
+I G L + A+ TF + +FRC+
Sbjct: 85 VISFYGRARLPDRAIQTFESIPEFRCQRTVKSLNSLLNALLKCKEFEKFDGILSGIDKFA 144
Query: 202 -PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
PDV YNV+INA C G+ A + ++M L C P+V T+ LIS C
Sbjct: 145 TPDVCTYNVLINACCSSGSLGDAWNVFDEM-LRKHVC-PNVVTFGTLISGLC 194
>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 566
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI +E V +A+ F M+ C+PDV YNV+I C+ G ++A L++
Sbjct: 208 TCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKK- 266
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
LP + C DV ++ +++ S C G
Sbjct: 267 -LPSYGCQSDVISHNMILRSLCSGG 290
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+ TCKE G+ G +K EM RG G T LIK +EG ++EA+
Sbjct: 214 DATCKESGV----GQAMK----LFNEM--RGKGCKPDVVTYNVLIKGFCKEGRLDEAIIF 263
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
++ + C+ DV ++N+++ +LC G + A LL M G C P V T+ ILI+
Sbjct: 264 LKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKG--CFPSVVTFNILINFL 321
Query: 252 CKYGM 256
C+ G+
Sbjct: 322 CQKGL 326
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
+T ++ L + G + +A+ R Q +C PDV V+I+A C+ +A L
Sbjct: 171 AATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFN 230
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M G C PDV TY +LI +CK G
Sbjct: 231 EMRGKG--CKPDVVTYNVLIKGFCKEG 255
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L ++G V++A+ ++ C P + +YN VI+ L +VG A LLE+M
Sbjct: 383 TYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEM 442
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + PD+ T T ++ + G
Sbjct: 443 CYKGLK--PDLITCTSVVGGLSREG 465
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ L+EM +G +L+T ++V + L EG V+EA+ F+ +K F +P+ + YN ++
Sbjct: 437 ELLEEMCYKGLKPDLITCTSV---VGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIM 493
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC+ + A L M G C P +YT LI G+
Sbjct: 494 MGLCKAQQTSLAIDFLVDMVANG--CKPTEASYTTLIKGITYEGL 536
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++ A+ M C PD+ YN+++ ALC+ G + A +L Q+ G C P + +Y
Sbjct: 362 IDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKG--CSPSLISY 419
Query: 245 TILISSYCKYG 255
+I K G
Sbjct: 420 NTVIDGLLKVG 430
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 35/135 (25%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FLK++ G V + + +++ L G +A+ M + C P V +N++IN
Sbjct: 263 FLKKLPSYGCQSDVISHNM--ILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINF 320
Query: 214 LCRVGNFNKARFLLEQME--------------LPGF-------------------RCPPD 240
LC+ G KA +LE M + GF C PD
Sbjct: 321 LCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPD 380
Query: 241 VYTYTILISSYCKYG 255
+ TY IL+++ CK G
Sbjct: 381 IVTYNILLTALCKDG 395
>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 915
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LIK L +EAL M++ +P+++ Y V+I++LC KAR LL
Sbjct: 322 TVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELL 381
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
QM G P+V TY LI+ YCK GM
Sbjct: 382 GQMLEKGLM--PNVITYNALINGYCKRGM 408
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRG--NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ + ++ + KEM +G E+ T LI L E ++EA+ F +MK
Sbjct: 263 YCQRKDLDSAFKVFKEMPLKGCRRNEVAYTH----LIHGLCVERRIDEAMDLFVKMKDDD 318
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C P V Y V+I ALC ++A L+++ME G + P+++TYT+LI S C
Sbjct: 319 CYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIK--PNIHTYTVLIDSLC 369
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTC---LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
+ D ++M++ + EL + C L+ L GLV+E + M + + P++Y Y
Sbjct: 162 VLDLCRKMNKDESFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTY 221
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N ++N C+VGN +A + + G PD +TYT LI YC+
Sbjct: 222 NKMVNGYCKVGNVEEANQYVSMIVEAGL--DPDFFTYTSLIMGYCQ 265
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++A+ +M + + PDV YN +I+ CR GNF+ A LL M G PD +TY
Sbjct: 443 VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGL--VPDPWTY 500
Query: 245 TILISSYCK 253
T +I S CK
Sbjct: 501 TSMIDSLCK 509
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T ST T LI L ++G + A F +M +PD + Y I CR G A ++
Sbjct: 601 TVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMV 660
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M+ G PD++TY+ LI Y G
Sbjct: 661 AKMKENGV--SPDLFTYSSLIKGYGDLG 686
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTS-TVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R N + L M+ RG LV T T +I L + V EA F ++Q
Sbjct: 473 CRSGNFDSAYRLLSLMNDRG---LVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVI 529
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V Y +I+ C+ G N+A +LE+M C P+ T+ LI C G
Sbjct: 530 PNVVMYTALIDGYCKAGKVNEAHLMLEKM--LSKNCLPNSLTFNALIHGLCTDG 581
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ +KEM +G + T TV LI L + + +A +M + P+V YN +IN
Sbjct: 344 NLVKEMEEKGIKPNIHTYTV--LIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALIN 401
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C+ G A ++E ME R P+ TY LI YCK
Sbjct: 402 GYCKRGMIEDALDVVELMESRNLR--PNTRTYNELIKGYCK 440
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L +G + EA +M + +P V ++I+ L + G+F+ A +QM
Sbjct: 569 TFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQM 628
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + PD +TYT I +YC+ G
Sbjct: 629 LSSGTK--PDAHTYTTFIQTYCREG 651
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI + G VNEA +M C P+ +N +I+ LC G +A L E+M
Sbjct: 536 TALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVK 595
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+ P V T TILI K G
Sbjct: 596 IDLQ--PTVSTDTILIHRLLKDG 616
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI + G++ +AL M+ RP+ YN +I C+ N +KA +L +M
Sbjct: 395 TYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCK-RNVHKAMGVLNKM 453
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ PDV TY LI C+ G
Sbjct: 454 --LERKVLPDVVTYNSLIDGQCRSG 476
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T I+ EG + +A +MK+ PD++ Y+ +I +G N A +L++M
Sbjct: 639 TYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRM 698
Query: 231 ELPGFRCPPDVYTYTILISSYC--KYG 255
G C P +T+ LI KYG
Sbjct: 699 HDTG--CEPSQHTFLSLIKHLLEMKYG 723
>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
Length = 653
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T T LI+ L EG + EAL F +M +P+V Y +IN LC+VGN + A LL
Sbjct: 141 TTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRS 200
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
ME C P+V ++ LI S CK
Sbjct: 201 MEQG--NCQPNVVVFSTLIDSLCK 222
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 154 FLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
EM RG +LVT T++ L + +++A+A ++ PD+ Y +++
Sbjct: 407 LFHEMVARGQIPDLVTYRTLS---DYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILD 463
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+CR G AR L + G + P+V+TY I+I CK G+
Sbjct: 464 GMCRAGELEDARDLFSNLSSKGLQ--PNVWTYNIMIHGLCKQGL 505
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+EMSR+ EL T T LI L G + +A++ F+ M PD+ Y + +
Sbjct: 372 LFEEMSRQ---ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSD 428
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ + +KA LL+ +E G PD+ YT ++ C+ G
Sbjct: 429 YLCKNRHLDKAMALLKAIE--GSNWDPDIQIYTTILDGMCRAG 469
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+ A+ F M C +V +YN +IN C++ + +KA +L E+M P+ TY
Sbjct: 331 VDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQEL--TPNTVTY 388
Query: 245 TILISSYCKYG 255
LI C G
Sbjct: 389 NTLIHGLCHVG 399
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ LI L ++ V EA F M P++ YN +I+ LC++ + L+ +M
Sbjct: 214 STLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEM-- 271
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
+ PDV+T ++ + CK GM
Sbjct: 272 VDSKIMPDVFTLNTVVDALCKEGM 295
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EAL+TF RM + P +N ++ ++ + + + L QM+ F PPDVYT
Sbjct: 51 LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMD--SFGIPPDVYTL 108
Query: 245 TILISSYC 252
I+I+S C
Sbjct: 109 AIVINSLC 116
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+ +I L V+ A + ++ + +PD + +I LC G +A L ++M
Sbjct: 107 TLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKM 166
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF+ P+V TY LI+ CK G
Sbjct: 167 IGEGFQ--PNVVTYGTLINGLCKVG 189
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G T LI L + G + A+ M+Q C+P+V ++ +I++LC+
Sbjct: 168 GEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVT 227
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+A + +M G P++ TY LI CK
Sbjct: 228 EAFNIFSEMITKGIS--PNIVTYNSLIHGLCK 257
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++A+ F M + P+ YN +I+ LC VG A L +M G PD+ TY
Sbjct: 366 VDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQ--IPDLVTY 423
Query: 245 TILISSYCK 253
L CK
Sbjct: 424 RTLSDYLCK 432
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ D +S +G V T + +I L ++GL+ EA F M + C
Sbjct: 465 MCRAGELEDARDLFSNLSSKGLQPNVWTYNI--MIHGLCKQGLLAEASKLFSEMNKNGCS 522
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
P+ YN++ R + LLE+M GF DV T T+L+ G+
Sbjct: 523 PNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSV--DVSTTTLLVGMLSDDGLD 576
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
M + PDV+ N V++ALC+ G +A +++ M G P+V TY L+ +C
Sbjct: 270 EMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVE--PNVVTYNALMDGHC 326
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
L+ +M F PDVY +VIN+LC + + A L ++ G + PD T+T LI
Sbjct: 90 LSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQ--PDATTFTTLI 147
Query: 249 SSYCKYG 255
C G
Sbjct: 148 RGLCVEG 154
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T ++ + G + +A F + +P+V+ YN++I+ LC+ G +A L +M
Sbjct: 459 TTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNK 518
Query: 233 PGFRCPPDVYTYTILISSYCK 253
G C P+ TY ++ + +
Sbjct: 519 NG--CSPNDCTYNLITRGFLR 537
>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 783
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I+ L +EG V EAL M + RPD YN +I C +G ++A L ++E+
Sbjct: 342 TIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESL--RLEI 399
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
C P+ +TY+ILI CK G+
Sbjct: 400 SKHDCFPNNHTYSILICGMCKNGL 423
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W L+E+ + + +++ + LI+ E G+ +A+ +F M+ F C+PD++A+N+++
Sbjct: 113 WKVLQEL--KNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGLMRDFDCKPDLFAFNLIL 170
Query: 212 NALCRVGNFNKARFLLEQMELPGFRC--PPDVYTYTILISSYCK 253
+ L R F A + QM +C PDV TY ILI CK
Sbjct: 171 HFLVRKEAFLLALAVYNQM----LKCNLNPDVVTYGILIHGLCK 210
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+G ++ +++ +++ L E G++ +A ++ PD+ YN++IN C+ GN
Sbjct: 483 QGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNI 542
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N A L ++M+L G PD TY LI + G
Sbjct: 543 NGAFKLFKEMQLKGHM--PDSVTYGTLIDGLYRAG 575
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM+ RG T LIK + G ++EA + + + C P+ + Y+++I
Sbjct: 360 LLGEMTERGLRP--DTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICG 417
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+C+ G NKA+ + ++ME G C P V T+ LI+ CK
Sbjct: 418 MCKNGLINKAQHIFKEMEKLG--CLPSVVTFNSLINGLCK 455
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 15/99 (15%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI + + GL+N+A F M++ C P V +N +IN LC+ +AR L QM
Sbjct: 410 TYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQM 469
Query: 231 ELPGFRCPP-------------DVYTYTILISSYCKYGM 256
E+ R P D+ + +++ C+ GM
Sbjct: 470 EI--VRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGM 506
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G ++ CLI L EA + +M + +PDV Y ++I L + G +
Sbjct: 297 DGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTE 356
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A LL +M G R PD Y LI +C G
Sbjct: 357 ALTLLGEMTERGLR--PDTICYNALIKGFCDMG 387
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + +AL F M P+ Y++V++ LC+ A+ L +M
Sbjct: 200 TYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKM 259
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C D+ TY +L++ +CK G
Sbjct: 260 RASG--CNRDLITYNVLLNGFCKSG 282
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
M +G L T LI + G +N A F M+ PD Y +I+ L R
Sbjct: 515 MQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRA 574
Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
G A + EQM G C P+ TY +++ C+
Sbjct: 575 GRNEDALEIFEQMVKKG--CVPESSTYKTIMTWSCR 608
>gi|399107192|gb|AFP20360.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 116 RFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 175
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 176 DEAMXLFKRMEEEE-GCDQTVYTYTILISG 204
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 25 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 84
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 85 FK--PDVVTYSVVVNGLCKNG 103
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 39 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 96
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 97 NGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 154
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 155 CTRDSYCYNALIDALTKHG 173
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+A + M + + + +++VI LC+ G N+ + E M G + P+V YT+LI
Sbjct: 4 VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLI 61
Query: 249 SSYCKYG 255
Y K G
Sbjct: 62 DGYAKSG 68
>gi|341605685|gb|AEK82945.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G B+
Sbjct: 116 NGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVBE 175
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISS 250
A L ++ME C VYTYTILIS
Sbjct: 176 AMXLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 82
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ DV TY+++++ CK G
Sbjct: 83 FK--XDVVTYSVVVNGLCKNG 101
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM + DV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKXDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 18 HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLIDGYAKSG 66
>gi|413948245|gb|AFW80894.1| hypothetical protein ZEAMMB73_865420 [Zea mays]
Length = 573
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
RG + + + FL+E+ +G ++VT +T L+ +G + +AL F M R
Sbjct: 217 ALCRGEDAERAYGFLEELEEQGFEPDVVTYNT---LLAGYCRKGRLQDALHLFDVMPHRR 273
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ ++ ++++ LC+ AR + ++M G R PD Y++LI+ YC G
Sbjct: 274 VPPDLVSHTILMDGLCKAWRLKDARRMFDRMVHGGLR--PDAVAYSVLITGYCNEG 327
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RPD +N+++ ALCR + +A LE++E GF PDV TY L++ YC+ G
Sbjct: 205 RPDARTFNILVAALCRGEDAERAYGFLEELEEQGFE--PDVVTYNTLLAGYCRKG 257
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ L + + +A F RM RPD AY+V+I C G +AR LL ME+
Sbjct: 282 TILMDGLCKAWRLKDARRMFDRMVHGGLRPDAVAYSVLITGYCNEGQLKEARSLL--MEM 339
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G + +++ + K+G
Sbjct: 340 AGSGLLDIAFALRVVVQGHVKFG 362
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G ++ + + +CLI L E+ N A M + P + YN++++ CR N
Sbjct: 375 RKYGIVIPSQSYSCLIGALCEDMRPNAARGLLQWMIEDGHCPSLQMYNMIVDCFCRCDNP 434
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A L ++E+ P+ TY LI C+ G
Sbjct: 435 KEA--LDVKVEMTSREVKPNYNTYQTLIICLCRLG 467
>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 822
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
S GNG + S LI G+ G+++EA+ F +M++ PD + Y VI A R+G
Sbjct: 392 SMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMG 451
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A QM G + PD Y LI +C +G
Sbjct: 452 RLADAMDKFNQMIAMGLK--PDTIVYNSLIQGFCMHG 486
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D L M ++ G + +I EG V++A F+ M Q PDV Y+ I+
Sbjct: 211 DLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYID 270
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
ALC+ +KA +L QM GF PD TY +I Y G
Sbjct: 271 ALCKARAMDKAELVLRQMISNGFE--PDKVTYNCMIHGYSILG 311
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 23/161 (14%)
Query: 97 LGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLK 156
L A + Q + +G+ T Y+ + + F N V KE+ +
Sbjct: 453 LADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKEL----------------IS 496
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
EM RG + +TV +I L +EG V EA F + RPDV +N +I+
Sbjct: 497 EMMSRG---IPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGY 553
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
VG KA +L+ M G PDV TY+ L+ YC+ G
Sbjct: 554 GLVGKMEKAFGVLDAMISVGIE--PDVVTYSALLDGYCRNG 592
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATF 192
TC + K +F M+ +G+ +LVT S L+ EG V + L F
Sbjct: 334 TCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSV---LLHGYAAEGYVVDMLNLF 390
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
M+ D YN++I+A + G ++A + QM+ G PD +TY +I+++
Sbjct: 391 NSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVM--PDAWTYGTVIAAFS 448
Query: 253 KYG 255
+ G
Sbjct: 449 RMG 451
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T C+I G E F M + PD++ N +++LC+ G +A + M
Sbjct: 299 TYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSM 358
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + PD+ TY++L+ Y G
Sbjct: 359 AAKGHK--PDLVTYSVLLHGYAAEG 381
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
+V + CL + VN L +RM + PD +Y+ V+ +LC +A
Sbjct: 155 IVANILLKCLCHAKRSDDAVNVLL---HRMPELGVEPDTISYSTVLKSLCEDSRSQRALD 211
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL M C P+V +Y +I + + G
Sbjct: 212 LLHTMVKKSGGCSPNVVSYNTVIHGFFREG 241
>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Cucumis sativus]
gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Cucumis sativus]
Length = 834
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE--LVTT 169
++KA E YH V + + + C + + + ++ EM R NG+ V
Sbjct: 149 VDKALEVYHGVVKLHNSLPSTYACNSLLNLLVKHRRIETAHQLYDEMIDRDNGDDICVDN 208
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T + ++K L +G + + + C P++ YN +I+ C+ G A L ++
Sbjct: 209 YTTSIMVKGLCLKGRIEDGIKLIESRWGKGCVPNIVFYNTLIDGYCKKGEVESAYKLFKK 268
Query: 230 MELPGFRCPPDVYTYTILISSYCKYGM 256
+++ GF P + T+ L++ +CK GM
Sbjct: 269 LKMKGF--IPTLQTFGSLVNGFCKMGM 293
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+N L F M + C+P+V Y +IN CR G A L M G + P V TY
Sbjct: 574 MNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLK--PSVVTY 631
Query: 245 TILISSYCK 253
+ILI S+CK
Sbjct: 632 SILIGSFCK 640
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM RG V +I + G +A T M + C PD+ YN +IN
Sbjct: 300 LLLEMKDRGLS--VNVQMYNNIIDARYKLGFDIKAKDTLKEMSENCCEPDLVTYNTLINH 357
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
C G +A LLEQ G P+ TYT L+ YCK G T
Sbjct: 358 FCSRGEVEEAEKLLEQTIRRGL--APNKLTYTPLVHGYCKQGEYT 400
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D+L EMS +G V + LI L G V+ AL RM PD YNV++N
Sbjct: 404 DYLIEMST--SGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMN 461
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L + G + A+ +L +M PD + Y L+ + ++G
Sbjct: 462 GLFKKGKLSMAKVMLTEMLDQNI--APDAFVYATLVDGFIRHG 502
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK + G+++ A+ +M++ PD++ ++ +I+ + N N + M
Sbjct: 529 MIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQ- 587
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+V TYT LI+ YC+ G
Sbjct: 588 -NCKPNVVTYTSLINGYCRKG 607
>gi|341605699|gb|AEK82952.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G ++
Sbjct: 116 NGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDE 175
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISS 250
A L ++ME C VYTYTILIS
Sbjct: 176 AMXLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM +G V + +I L +EG +NE A F M + +P+V Y V+I+
Sbjct: 6 QEMDEKGI--QVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 63
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G+ A LL +M GF+ PDV TY+++++ CK G
Sbjct: 64 KSGSVEDAIRLLHRMIDEGFK--PDVVTYSVVVNGLCKNG 101
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCXFNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
>gi|255685752|gb|ACU28365.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
Length = 178
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G V+EA F M + C D Y YN +I+A + G
Sbjct: 83 RFNGLAINSMFYSSLIDGLGKXGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKV 142
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
N+A L ++ME C VYTYTILIS
Sbjct: 143 NEAXALFKRMEEEE-GCDQTVYTYTILISG 171
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
E A F M + +P+V Y V+I+ + G+ A LL +M GF PDV TY++
Sbjct: 4 EGYAVFENMIRKGSKPNVAIYTVLIDGYAKXGSVEDAIRLLXRMIDEGF--XPDVVTYSV 61
Query: 247 LISSYCKYG 255
+++ CK G
Sbjct: 62 VVNGLCKNG 70
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 52/139 (37%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ RM PDV Y+VV+
Sbjct: 6 YAVFENMIRKGSKPNVAIYTV--LIDGYAKXGSVEDAIRLLXRMIDEGFXPDVVTYSVVV 63
Query: 212 NALCR-----------------------------------VGNFNKARFLLEQMELPGFR 236
N LC+ G ++A L E+M G
Sbjct: 64 NGLCKNGRVEEALDYFXTCRFNGLAINSMFYSSLIDGLGKXGRVDEAERLFEEMSEKG-- 121
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI ++ K+G
Sbjct: 122 CTRDSYCYNALIDAFTKHG 140
>gi|326521552|dbj|BAK00352.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 729
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+E L+ M Q C+PDV N V++ C+VG +AR +L+ M + G C PDV T+T
Sbjct: 361 SEQLSVLVSMLQGDCKPDVITMNTVVHGFCKVGRTQEARKILDDM-INGKFCAPDVVTFT 419
Query: 246 ILISSYCKYG 255
LIS Y G
Sbjct: 420 TLISGYLDVG 429
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 167 VTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
+T +V T +IK L + G + EA A + + D Y Y+ ++ LC++G +A
Sbjct: 482 ITADSVSHTVVIKGLCDAGQLEEAKAFWDNVVWPSGIHDGYVYSAILRGLCKLGKLEQAC 541
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L ++ G C P V Y ILI + CK G
Sbjct: 542 DFLYELADSGV-C-PSVVCYNILIDTACKQG 570
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR-PDVYAYNV 209
LW ++ G + + L++ L EG + M Q RC PD +AY
Sbjct: 177 LWTSMERCHDEDQG--LKNAAFANLVQCLCGEGFFHIVFRVAEEMPQRRCLVPDEFAYAQ 234
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+I++LCR G + A ++ M G R P +Y ++ C
Sbjct: 235 MIDSLCRAGQHHGASRIVYVMGKRGLR--PSTLSYNCIVHGLC 275
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYR-MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T T LI + G EAL + M + RC P+V YN V+ L +G ++A +L++
Sbjct: 417 TFTTLISGYLDVGEHAEALHVLHTLMPRRRCAPNVVTYNSVLKGLFCLGLVDRAMQVLDE 476
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M+L D ++T++I C G
Sbjct: 477 MKLSSITA--DSVSHTVVIKGLCDAG 500
>gi|168066970|ref|XP_001785401.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662982|gb|EDQ49775.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 318
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ N+ G+ L+ M R G L T I L ++ EALA F M+
Sbjct: 54 YREAKNLAGIRRVLEHMQREGC--LPNEYIYTTFIDALDKDTCHEEALAVFKEMRDSNWE 111
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+++ YNV+I++L G + AR + ++ P R P+ TYTIL++++ K G
Sbjct: 112 PNIFTYNVLIHSLATAGKLDGAREMFGRLPEPHHR--PNFVTYTILVTAHVKAG 163
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D +KE R N T + LI +L AL + M + +P+V Y +I+
Sbjct: 205 DNMKERGHRPN-----VYTYSMLIDLLSRTRNHAHALKMYKEMFKANSKPNVNTYTTLIH 259
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+L R G N A + M LP P TYTI+I ++ +
Sbjct: 260 SLARTGKVNAANTMF--MGLPSLGINPSAVTYTIMIQAFLR 298
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FLK M G + + + L L +G +E L MK+ RP+VY Y+++I+
Sbjct: 171 FLKTMMEAGF--MPSHGLRSILFTALMAKGRADEVLDN---MKERGHRPNVYTYSMLIDL 225
Query: 214 LCRVGNFNKARFLLEQMELPGFRC--PPDVYTYTILISSYCKYG 255
L R N A + ++M F+ P+V TYT LI S + G
Sbjct: 226 LSRTRNHAHALKMYKEM----FKANSKPNVNTYTTLIHSLARTG 265
>gi|115470867|ref|NP_001059032.1| Os07g0179000 [Oryza sativa Japonica Group]
gi|34393469|dbj|BAC83029.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|50509181|dbj|BAD30332.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113610568|dbj|BAF20946.1| Os07g0179000 [Oryza sativa Japonica Group]
gi|125599319|gb|EAZ38895.1| hypothetical protein OsJ_23314 [Oryza sativa Japonica Group]
gi|215712269|dbj|BAG94396.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767408|dbj|BAG99636.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 727
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 81/205 (39%), Gaps = 19/205 (9%)
Query: 67 GRQTGFRHRTP--------LKQRILKKEADNIANNVLVLG-PAAYRNPQ---KVTLGINK 114
GRQ GFRH P L L AD + + + G P ++ ++ G +
Sbjct: 150 GRQKGFRHCFPAFHALASLLSAAGLPAAADQLPDLMRAHGKPVSHSQLNLLVRLHTGARR 209
Query: 115 ATEFYHWVERFFHFF--HNEV-TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
H + RF H F EV C + A +V EMS + T
Sbjct: 210 PLRALHALRRFRHEFSVQPEVHACNRVLGALAAAGHVDDTLKLFDEMSHCSVRPMPVTFA 269
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ +++ L G+ ++ L RM+ CRPDV+ Y ++ + R G+ + E++
Sbjct: 270 I--MVRALARAGMTDKLLEMIGRMRAEVCRPDVFVYTALVKTMVRWGHMEGCIRVWEEIR 327
Query: 232 LPGFRCPPDVYTYTILISSYCKYGM 256
PD YT +I+ C GM
Sbjct: 328 RD--HVDPDTMAYTTMIAGLCNAGM 350
>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
Length = 742
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
GN ++ D ++++ +G V T + LI L + G + AL F MK C PD
Sbjct: 369 GNRLEEALDLARQVTVKGVSPDVYTFNI--LINALCKVGDPHLALRLFEEMKNSGCTPDE 426
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN +I+ LC +G KA LL+ ME G CP TY +I CK
Sbjct: 427 VTYNTLIDNLCSLGKLGKALDLLKDMESTG--CPRSTITYNTIIDGLCK 473
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L +M RG L +T LI L + EAL ++ PDVY +N++INA
Sbjct: 343 ILNQMVDRGC--LPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 400
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+VG+ + A L E+M+ G C PD TY LI + C G
Sbjct: 401 LCKVGDPHLALRLFEEMKNSG--CTPDEVTYNTLIDNLCSLG 440
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V AL M Q PDV+ YN+V+N LC+ G +A+ +L QM G C PD+ T+
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRG--CLPDITTF 359
Query: 245 TILISSYC 252
LI++ C
Sbjct: 360 NTLIAALC 367
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
V CL K G + EA +M C PD+ +N +I ALC +A L Q+
Sbjct: 328 VNCLCK----NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 383
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
+ G PDVYT+ ILI++ CK G
Sbjct: 384 VKGV--SPDVYTFNILINALCKVG 405
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R + V+ L+EMS RG +T T L++ EEG + AL RM + C
Sbjct: 191 LCRAHQVRTAVLMLEEMSSRGVAP--DETTFTTLMQGFVEEGSIEAALRVKARMLEMGCS 248
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
NV+IN C++G A ++Q GF PD TY ++ C+
Sbjct: 249 ATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFE--PDQITYNTFVNGLCQ 298
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N +T + + + ++K D L+ M+ NG V T LI L + G AL
Sbjct: 530 NNITYNSILTHYCKQGDIKKAADILETMT--ANGFEVDVVTYGTLINGLCKAGRTQVALK 587
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M+ RP AYN V+ +L R N A L +M G PPD TY I+
Sbjct: 588 VLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGE--PPDALTYKIVFRG 645
Query: 251 YCKYG 255
C+ G
Sbjct: 646 LCRGG 650
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L ++ +++A +M +P+ YN ++ C+ G+ KA +LE M
Sbjct: 498 TFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM 557
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF DV TY LI+ CK G
Sbjct: 558 TANGFEV--DVVTYGTLINGLCKAG 580
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ VL E + + + M +PDV +N ++ ALCR A +LE+M G
Sbjct: 152 LLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRG 211
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD T+T L+ + + G
Sbjct: 212 V--APDETTFTTLMQGFVEEG 230
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L G + +AL M+ C YN +I+ LC+ +A + +QM
Sbjct: 428 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 487
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+L G + T+ LI CK
Sbjct: 488 DLQGI--SRNAITFNTLIDGLCK 508
>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L EG + EA+ F M + P+V +Y VIN LC+ GN + A + ++M
Sbjct: 165 TFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKM 224
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E G C P+V TY+ +I S CK
Sbjct: 225 EQNG--CKPNVVTYSTIIDSLCK 245
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
KEM G + T T T L+ L +EG+V+EA F M + PD+ YN +++
Sbjct: 290 LFKEMV--GRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDG 347
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C N+A+ + E M G C P ++Y ILI+ YCK
Sbjct: 348 YCLQRLMNEAKKVFEIMIRKG--CAPGAHSYNILINGYCK 385
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ N D K+M + G +VT ST+ I L ++ LVN+A+ M +
Sbjct: 208 LCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTI---IDSLCKDRLVNDAMEFLSEMVERGI 264
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P+V+ YN +++ C +G N+A L ++M G P+ T+TIL+ CK GM
Sbjct: 265 PPNVFTYNSIVHGFCNLGQLNEATRLFKEM--VGRDVMPNTVTFTILVDGLCKEGM 318
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
+K + EM +RG+ V + T +I L + G + A+ F +M+Q C+P+V Y
Sbjct: 179 IKEAVELFNEMVKRGHEPNVISYTT--VINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTY 236
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +I++LC+ N A L +M G PP+V+TY ++ +C G
Sbjct: 237 STIIDSLCKDRLVNDAMEFLSEMVERGI--PPNVFTYNSIVHGFCNLG 282
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
V +FL EM RG V T ++ G +NEA F M P+ +
Sbjct: 249 VNDAMEFLSEMVERGIPPNVFT--YNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTF 306
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
++++ LC+ G ++AR + E M G PD+ TY L+ YC
Sbjct: 307 TILVDGLCKEGMVSEARLVFETMTEKGVE--PDISTYNALMDGYC 349
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
ST L+ + L+NEA F M + C P ++YN++IN C+ ++A+ LL +
Sbjct: 339 STYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAE 398
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M PD TY+ L+ C+ G
Sbjct: 399 MYHKALN--PDTVTYSTLMQGLCQLG 422
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
K + KEM G + T + L+ + G ++EAL MK+ + P++ Y
Sbjct: 425 KEALNLFKEMCSYGPHPNLVTYVI--LLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYT 482
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
++I + G A+ L ++ G R PD+ TYT++I K G+
Sbjct: 483 ILIEGMFIAGKLEVAKELFSKLFGDGTR--PDIRTYTVMIKGLLKEGL 528
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++ALA+FYRM + RP V + + + + ++ L QM+L FR +VY+
Sbjct: 74 VDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDL--FRVTHNVYSL 131
Query: 245 TILISSYCK 253
ILI+ C+
Sbjct: 132 NILINCLCR 140
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
++ LI L V+ +++ +M + PD +N +IN LC G +A L +M
Sbjct: 130 SLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEM 189
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P+V +YT +I+ CK G
Sbjct: 190 VKRGHE--PNVISYTTVINGLCKTG 212
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L EM + N + VT ST L++ L + G EAL F M + P++ Y ++++
Sbjct: 395 LLAEMYHKALNPDTVTYST---LMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLD 451
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
C+ G+ ++A LL+ M+ + P++ YTILI
Sbjct: 452 GFCKHGHLDEALKLLKSMKEK--KLEPNIVHYTILI 485
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA + M PD Y+ ++ LC++G +A L ++M + P++ TY
Sbjct: 389 MDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEM--CSYGPHPNLVTY 446
Query: 245 TILISSYCKYG 255
IL+ +CK+G
Sbjct: 447 VILLDGFCKHG 457
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M FR +VY+ N++IN LCR+ + + + +L +M G PD T+ LI+ C
Sbjct: 118 QMDLFRVTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIH--PDAITFNALINGLCN 175
Query: 254 YG 255
G
Sbjct: 176 EG 177
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRR--GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
+ G + G + KE+ + G+G T T +IK L +EGL +EA F +M+
Sbjct: 483 ILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDD 542
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
P+ +YNV+I + + + A L+++M G R ++ T+ +L+
Sbjct: 543 GFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEM--VGKRFSVNLSTFQMLLD 591
>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
Length = 845
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R K + L+EM +G V T T +I +EG +++AL MK C+P+
Sbjct: 301 RERKAKEAEEMLQEMFEKGLAPCVVTCTA--VINAYCKEGRMSDALRVLELMKLRGCKPN 358
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V+ YN ++ C G +KA LL +M G PD TY +LI C G
Sbjct: 359 VWTYNALVQGFCNEGKVHKAMTLLNKMRACGVN--PDAVTYNLLIRGQCIDG 408
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G+G + T LI L ++G ++A + F ++ +P+ +N +IN LC+ G +
Sbjct: 422 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKAD 481
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A LE+M G C PD YTY+ I CK
Sbjct: 482 IAWKFLEKMVSAG--CTPDTYTYSSFIEHLCK 511
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
VTC + + + + L+ M RG V T L++ EG V++A+
Sbjct: 325 VTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWT--YNALVQGFCNEGKVHKAMTLL 382
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+M+ PD YN++I C G+ A LL ME G D YTY LI++ C
Sbjct: 383 NKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIA--DQYTYNALINALC 440
Query: 253 KYG 255
K G
Sbjct: 441 KDG 443
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T +I+ L + AL M + RPD Y +N +I CR + AR L
Sbjct: 152 TAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLF 211
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++M L GF DV +Y LI C+ G
Sbjct: 212 DKMPLRGF--AQDVVSYATLIEGLCEAG 237
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ + R N V D +M RG + V + LI+ L E G ++EA+ F M Q
Sbjct: 196 VGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAT--LIEGLCEAGRIDEAVELFGEMDQ-- 251
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD++ Y ++ LC + +L +M+ G+R P Y ++ C+
Sbjct: 252 --PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWR--PSTRAYAAVVDFRCR 301
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
GEEGL+ RMK+ RP AY V++ CR +A +L++M G P
Sbjct: 270 GEEGLL-----MLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGL--AP 322
Query: 240 DVYTYTILISSYCKYG 255
V T T +I++YCK G
Sbjct: 323 CVVTCTAVINAYCKEG 338
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI+ +G + A M+ D Y YN +INALC+ G ++A L + +
Sbjct: 396 TYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSL 455
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G + P+ T+ LI+ CK G
Sbjct: 456 ETRGIK--PNAVTFNSLINGLCKSG 478
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P YN VI +LCR + +A L M G+R PD YT+ LI YC+
Sbjct: 151 PTAPTYNAVIRSLCRRADLARALRYLSLMVRSGWR--PDAYTFNSLIVGYCR 200
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W FL++M G T T + I+ L + E L+ M Q +P Y +VI
Sbjct: 484 WKFLEKMVSAGCTP--DTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVI 541
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ L + N+ +M G C PDV TYT + +YC G
Sbjct: 542 HKLLKERNYGLVARTWGEMVSSG--CNPDVVTYTTSMRAYCIEG 583
>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
Length = 509
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + +I L + +++A +M++ C PDV Y +I+A C+VG ++AR L ++M
Sbjct: 368 TYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRM 427
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C DV Y ILI YC+
Sbjct: 428 HERG--CALDVVAYNILIRGYCR 448
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + + L EM + G T T LI+ L E ++AL F++M + +
Sbjct: 62 FCKAEQIPQAVNLLGEM--KAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVK 119
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY---CKY 254
PD + Y VVI LC++ + A E+M G C PD TYT+L+ S CK+
Sbjct: 120 PDAFLYTVVIGHLCKINKLDLAASYFERMVQSG--CLPDKVTYTVLVHSLFKACKW 173
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCR-PDVYAYNVVINALCRVGNFNKARFLLEQME 231
T L+ L + V EA RM + R P V Y+ VI+ LC+ + A +L++M
Sbjct: 334 TVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMR 393
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
G C PDV TYT +I ++CK G
Sbjct: 394 RAG--CVPDVVTYTAIIDAFCKVG 415
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D +E+ G++ T I L + G ++EA A +M + C PD +YNV+I
Sbjct: 244 DEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIY 303
Query: 213 ALCRVGNFNKARFLLEQ-MELPGFRCPPDVYTYTILISSYCK 253
+LC+ ++A+ L++Q ME +C P V T+L+ CK
Sbjct: 304 SLCKDNRVSEAKELMDQAMER---KCMPGVPVCTVLVDGLCK 342
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + + + L++M R G V T T +I + G ++EA F RM + C
Sbjct: 376 LCKADRLDDAYVVLQKMRRAGCVPDVVTYTA--IIDAFCKVGRLDEARELFQRMHERGCA 433
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
DV AYN++I CR ++A ++E+M G + P+V + + ++ CK
Sbjct: 434 LDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQ--PNVVSLSTIVDGLCK 483
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A + F RM Q C PD Y V++++L + + + + E+M G P++ TY +
Sbjct: 141 AASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGH--SPELVTYATV 198
Query: 248 ISSYCKYG 255
++ YCK G
Sbjct: 199 VNGYCKAG 206
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 154 FLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+EM +G+ ELVT +TV + + G +++AL+ R+K P Y+ +I+
Sbjct: 179 IFEEMLSKGHSPELVTYATV---VNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLID 235
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ ++AR L E M + DV YT IS CK G
Sbjct: 236 GLCKHDRHDEARELFE-MAAGDVQ---DVIVYTSFISGLCKAG 274
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L ++ V+EA + + +C P V V+++ LC+ +A +LE+M G
Sbjct: 301 IIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETG 360
Query: 235 FRCPPDVYTYTILISSYCK 253
R P V TY+ +I CK
Sbjct: 361 DR-APSVVTYSAVIDGLCK 378
>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
Length = 924
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
LK+M++ G + T T +I+ + EA M++ P+VY Y+++IN
Sbjct: 405 ILKQMTKIG--YMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIING 462
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC++G +A LLEQM G + P+ + Y LIS YC+ G
Sbjct: 463 LCQIGESERASGLLEQMIADGLK--PNAFVYAPLISGYCREG 502
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G + T LI L G + EA M+ + PD + Y +IN LC+ G
Sbjct: 270 RETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRP 329
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++A+ LL++M G P+V Y+ LI + + G
Sbjct: 330 DQAKCLLDEMSCAGLM--PNVVVYSTLIDGFMRQG 362
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M+ PDVY Y+ +I A C+V + A+ ++E+M G C +V TY LI C+
Sbjct: 234 MEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETG--CSLNVVTYNTLIGGLCRA 291
Query: 255 G 255
G
Sbjct: 292 G 292
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+ +A+ M + P + YN +I+ C+ + + AR + + G PP+ TY
Sbjct: 679 MEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGL--PPNCVTY 736
Query: 245 TILISSYCKYG 255
T LI YCK G
Sbjct: 737 TTLIDGYCKAG 747
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
M++ C +V YN +I LCR G +A ++ME G PD +TY +I+ CK
Sbjct: 268 EMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLV--PDGFTYGAIINGLCK 325
Query: 254 YG 255
G
Sbjct: 326 RG 327
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI EG + A T +M + PD+Y YN +I L VG ++A ++M G
Sbjct: 494 LISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKG 553
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ P+ +TY LI Y G
Sbjct: 554 FQ--PNDFTYGGLIHGYSMAG 572
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EMS G + + LI +G +EA M +P+ Y+ +I
Sbjct: 335 LLDEMSCAG--LMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRG 392
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC++G +A +L+QM G+ D TY ++I + +
Sbjct: 393 LCKLGRMGRASRILKQMTKIGYMA--DTMTYNLVIEGHLR 430
>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
Group]
gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
Length = 742
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
GN ++ D ++++ +G V T + LI L + G + AL F MK C PD
Sbjct: 369 GNRLEEALDLARQVTVKGVSPDVYTFNI--LINALCKVGDPHLALRLFEEMKNSGCTPDE 426
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN +I+ LC +G KA LL+ ME G CP TY +I CK
Sbjct: 427 VTYNTLIDNLCSLGKLGKALDLLKDMESTG--CPRSTITYNTIIDGLCK 473
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L +M RG L +T LI L + EAL ++ PDVY +N++INA
Sbjct: 343 ILNQMVDRGC--LPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 400
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+VG+ + A L E+M+ G C PD TY LI + C G
Sbjct: 401 LCKVGDPHLALRLFEEMKNSG--CTPDEVTYNTLIDNLCSLG 440
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V AL M Q PDV+ YN+V+N LC+ G +A+ +L QM G C PD+ T+
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRG--CLPDITTF 359
Query: 245 TILISSYC 252
LI++ C
Sbjct: 360 NTLIAALC 367
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
V CL K G + EA +M C PD+ +N +I ALC +A L Q+
Sbjct: 328 VNCLCK----NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 383
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
+ G PDVYT+ ILI++ CK G
Sbjct: 384 VKGV--SPDVYTFNILINALCKVG 405
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R + V+ L+EMS RG +T T L++ EEG + AL RM + C
Sbjct: 191 LCRAHQVRTAVLMLEEMSSRGVAP--DETTFTTLMQGFVEEGSIEAALRVKARMLEMGCS 248
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
NV+IN C++G A ++Q GF PD TY ++ C+
Sbjct: 249 ATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFE--PDQITYNTFVNGLCQ 298
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N +T + + + ++K D L+ M+ NG V T LI L + G AL
Sbjct: 530 NNITYNSILTHYCKQGDIKKAADILETMT--ANGFEVDVVTYGTLINGLCKAGRTQVALK 587
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M+ RP AYN V+ +L R N A L +M G PPD TY I+
Sbjct: 588 VLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGE--PPDALTYKIVFRG 645
Query: 251 YCKYG 255
C+ G
Sbjct: 646 LCRGG 650
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L ++ +++A +M +P+ YN ++ C+ G+ KA +LE M
Sbjct: 498 TFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM 557
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF DV TY LI+ CK G
Sbjct: 558 TANGFEV--DVVTYGTLINGLCKAG 580
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ VL E + + + M +PDV +N ++ ALCR A +LE+M G
Sbjct: 152 LLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRG 211
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD T+T L+ + + G
Sbjct: 212 V--APDETTFTTLMQGFVEEG 230
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L G + +AL M+ C YN +I+ LC+ +A + +QM
Sbjct: 428 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 487
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+L G + T+ LI CK
Sbjct: 488 DLQGI--SRNAITFNTLIDGLCK 508
>gi|302833221|ref|XP_002948174.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
nagariensis]
gi|300266394|gb|EFJ50581.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
nagariensis]
Length = 1001
Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187
F N T + + + + + +EM R+ V T + LI + G
Sbjct: 280 FTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVIT--YSSLISACEKAGQWET 337
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
AL F M+Q +C P+ YN ++ A + G + KA + EQM G C PDV TYT L
Sbjct: 338 ALRIFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHG--CTPDVVTYTAL 395
Query: 248 ISSYCKYG 255
IS+Y + G
Sbjct: 396 ISAYERGG 403
Score = 40.8 bits (94), Expect = 0.51, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G +V + ++EM R V T T L+ V + G + AL + M+ C P+V
Sbjct: 157 GQDVDRALELMQEMRSRNIERNV--HTYTALMNVCIKCGKLPLALDIYNSMRAVNCMPNV 214
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
YN +++ ++G + +A +L+ M+ G P + TY LI
Sbjct: 215 VTYNTLVDVYGKLGQWERAIHVLDVMKHEGVE--PVLRTYNTLI 256
Score = 37.4 bits (85), Expect = 5.5, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEA 188
N VT + A+G G W+ E+ + N T VT LI G +A
Sbjct: 353 NTVTYNSLVTACAQG----GQWEKAAEVFEQMNAHGCTPDVVTYTALISAYERGGQWQKA 408
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVG 218
L F++M C+PD YN +I+ L G
Sbjct: 409 LQAFHKMCVQGCKPDAIVYNAIIDTLWETG 438
>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
Length = 631
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 3/129 (2%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+EVTC E F R ++ L +M RRGN T T + L E V +A+
Sbjct: 52 SEVTCTECIQAFGRAGDLDAAMGMLDDM-RRGNFCQPDTVAFTAAMHWLCEVRRVEQAMT 110
Query: 191 TFYRMKQ-FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
F M++ C PDV AYN +I C+ G+ ++A + +++ G C P+ ++ L+
Sbjct: 111 LFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEG-SCKPNAVSFDTLVI 169
Query: 250 SYCKYGMQT 258
CK T
Sbjct: 170 FLCKMSRAT 178
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
G ++ T + L+ G+ G +AL FY M++ C PD YNV+I+ L + G ++
Sbjct: 329 GGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDE 388
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILIS 249
A LLE M G PD TY I+I
Sbjct: 389 ALELLEDMNRKGIM--PDCRTYNIVID 413
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D EM + N + +T LI L + G + +AL R+ + P+ Y YN +I+
Sbjct: 461 DLFDEM--QANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALIS 518
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CR G +K L + M C PD TYTIL+ + + G
Sbjct: 519 GFCRSGQVDKGYELFQDM--IECSCFPDSITYTILVLGFSRRG 559
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G+ + L D + + + G+ + S T L+ L + +ALA F M + DV
Sbjct: 139 GDGDRAL-DMFRRLKQEGSCKPNAVSFDT-LVIFLCKMSRATDALAVFQEMLGAGLKADV 196
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N +I+ CR+G +AR LL M C D +TY IL++++C+ G
Sbjct: 197 NVCNTLIHCTCRLGMLRQARRLLHHM--TAHACARDAFTYGILVNAHCRAG 245
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ V + L++M+R+G + T +I VL G +A + F MK+ +
Sbjct: 380 LGKQGKVDEALELLEDMNRKGI--MPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHS 437
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV YN ++N L ++ ++A L ++M+ +C PD+ T+ LI + K G
Sbjct: 438 PDVVTYNTLLNGLKKLRRTDEACDLFDEMQ--ANKCMPDLTTFGTLIDTLAKAG 489
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI LG++G V+EAL M + PD YN+VI+ L G + KA M+
Sbjct: 376 LISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRR- 434
Query: 235 FRCPPDVYTYTILISS 250
+ PDV TY L++
Sbjct: 435 -KHSPDVVTYNTLLNG 449
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 50/142 (35%), Gaps = 19/142 (13%)
Query: 125 FFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRR-----------GNGELVTTSTVT 173
F E +CK + F L FL +MSR G G +
Sbjct: 147 MFRRLKQEGSCKPNAVSF------DTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCN 200
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
LI G++ +A + M C D + Y +++NA CR G ++ +E
Sbjct: 201 TLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASFMELARHD 260
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G C Y +I + + G
Sbjct: 261 G--CALSAVNYNFIIQGFIRCG 280
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L + + EAL F +Q DV+ Y+ +++A + G KA + M+ G
Sbjct: 306 LLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAG 365
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD Y +LIS K G
Sbjct: 366 --CMPDTVVYNVLISCLGKQG 384
>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 594
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ L +EG+V EAL+ F +M Q PD+ Y+ +I+ +C+ + ++ LL +M
Sbjct: 316 TFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEM 375
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
R PDV T++I + +CK GM
Sbjct: 376 LSRNIR--PDVVTFSIWVDVFCKKGM 399
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
E+V+ S + I L + LVNEA+ FY M+ P V YN +I +C G + +A
Sbjct: 243 EVVSYSII---IDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQAS 299
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L ++M + PDV T++IL+ + CK G+
Sbjct: 300 ILFKEM--LEWNMKPDVVTFSILVDALCKEGV 329
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 154 FLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L EM SR ++VT S + V ++G+V+EA + M + RP+V YN +++
Sbjct: 371 LLNEMLSRNIRPDVVTFSI---WVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMD 427
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C ++AR + + M G C PDV +Y ILI YCK
Sbjct: 428 GYCLHSQMDEARKVFDIMVNKG--CAPDVLSYNILIKGYCK 466
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LIK + ++EA F M P+ + +I+ LC+ G A+ L ++M G
Sbjct: 460 LIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHG 519
Query: 235 FRCPPDVYTYTILISSYCKYG 255
CPPD+ TY+ L+S +CK+G
Sbjct: 520 --CPPDLITYSTLLSGFCKHG 538
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L EG + EA+ + +P VY + +++N LC++G + A +++M
Sbjct: 176 TFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKM 235
Query: 231 -ELPGFRCPPDVYTYTILISSYCK 253
EL C P+V +Y+I+I S CK
Sbjct: 236 VELD---CEPEVVSYSIIIDSLCK 256
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T ++ L + G + A+ +M + C P+V +Y+++I++LC+ N+A L
Sbjct: 208 TVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLF 267
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
M G P V TY LI C G
Sbjct: 268 YHMRSIGI--SPTVVTYNSLIYGMCNSG 293
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T+T LI L LV + ++ + +P + +N +IN LC G +A
Sbjct: 134 GVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEA 193
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L+ + G++ P VYT+T++++ CK G
Sbjct: 194 MEQLDYIMSRGYQ--PTVYTHTMIVNGLCKIG 223
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTS-TVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
R + K L+D EMS +G L S T T LI L + G A F +M C P
Sbjct: 469 RIDEAKQLFD---EMSHKG---LTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPP 522
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D+ Y+ +++ C+ G+ ++A L E ++ + P+ IL+ CK G
Sbjct: 523 DLITYSTLLSGFCKHGHLDEALALFEALKKSQLK--PNHVICKILLGGMCKAG 573
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LI + G +A F M ++ +PDV ++++++ALC+ G +A +
Sbjct: 278 TVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVF 337
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
+M PD+ TY+ LI CK +
Sbjct: 338 GKMIQIAME--PDIVTYSSLIHGVCKSSL 364
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI + + L E+ M RPDV +++ ++ C+ G ++A+ ++ M
Sbjct: 351 TYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLM 410
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
G R P+V TY L+ YC
Sbjct: 411 IERGLR--PNVVTYNSLMDGYC 430
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
++ALA F +M P + +N ++ AL R+ +++ + +ME G C VYT T
Sbjct: 86 DDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCS--VYTLT 143
Query: 246 ILISSYC 252
ILI+ C
Sbjct: 144 ILINCLC 150
>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG T L+ L ++ L + + +M + +++ YNV+++A C+ G+
Sbjct: 163 RVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNVLLHACCKSGDV 222
Query: 221 NKARFLLEQMELPGFRCP-PDVYTYTILISSYCKYGMQ 257
KA +L +MEL +C PD++TY LIS YCK GM
Sbjct: 223 EKAEKVLSEMEL---KCVFPDLFTYNTLISLYCKKGMH 257
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
A+ +W K+M + G + L+ + G V +A M + +C
Sbjct: 181 LAKDRLTDTVWKIYKKMVKLG--VVANIHVYNVLLHACCKSGDVEKAEKVLSEM-ELKCV 237
Query: 202 -PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD++ YN +I+ C+ G +A + ++ME+ G PD++TY LI +C+ G
Sbjct: 238 FPDLFTYNTLISLYCKKGMHYEALSVQDRMEMAGI--SPDIFTYNSLIYGFCREG 290
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI + ++G+ EAL+ RM+ PD++ YN +I CR G +A L +
Sbjct: 243 TYNTLISLYCKKGMHYEALSVQDRMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDI 302
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ P+ TYT LI YC+
Sbjct: 303 K----DVTPNHVTYTSLIDGYCR 321
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 154 FLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
L EMS R + VTC LI + G + AL +M + D + Y +I
Sbjct: 366 LLNEMSERK----IEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALI 421
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ C+ +KA+ LL M GF P TY+ L+ SYCK
Sbjct: 422 HGFCKAKEIDKAKELLFGMMDAGF--SPSYCTYSWLVDSYCK 461
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + + R N++ + MS +G T T +++ L E G + +A
Sbjct: 308 NHVTYTSLIDGYCRVNDLDEALRLKEVMSEKG--LYPTVITYNSILRKLCEGGRLRDANI 365
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M + + PD N +INA C++G+ A + ++M G + D +TY LI
Sbjct: 366 LLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKL--DQFTYKALIHG 423
Query: 251 YCK 253
+CK
Sbjct: 424 FCK 426
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI ++EAL M + P V YN ++ LC G A LL +M
Sbjct: 311 TYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEM 370
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ PD T LI++YCK G
Sbjct: 371 --SERKIEPDNVTCNTLINAYCKIG 393
>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 447
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ VK L EM +G ++VT ++V + L + +++A A F +MK++
Sbjct: 285 LCKEGKVKEAKKLLAEMHHKGQPADVVTYNSV---LDGLCKSQNLDKATALFMKMKKWGI 341
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+P+ Y Y +I+ LC+ G A+ L + + + G C DV TY ++IS CK GM
Sbjct: 342 QPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKG--CCIDVRTYNVMISGLCKEGM 395
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 5/144 (3%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+N+A +F+ + F N +T + F + G + L EM + V T
Sbjct: 221 VNQAYDFFSEMNAR-GIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYN 279
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ LI L +EG V EA M DV YN V++ LC+ N +KA L +M+
Sbjct: 280 I--LIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMK 337
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
G + P+ YTYT LI CK G
Sbjct: 338 KWGIQ--PNKYTYTALIDGLCKGG 359
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
R ++V ST+ I L ++ +VN+A F M P+V Y+ +I C G
Sbjct: 198 DRSTRPDVVMYSTI---IDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAG 254
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A LL +M L P+VYTY ILI + CK G
Sbjct: 255 QLMGAFSLLNEMILKNIN--PNVYTYNILIDALCKEG 289
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L + G + A F + C DV YNV+I+ LC+ G F+KA + +M
Sbjct: 347 TYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKM 406
Query: 231 ELPGFRCPPDVYTYTILISS 250
E G C P+ T+ I+I S
Sbjct: 407 EDNG--CIPNAVTFDIIIRS 424
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
E +V++ ++ F R+ R P + + ++ L ++ ++ A L QME+ G P++
Sbjct: 43 ENVVDDTVSQFNRLLLVRHTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIE--PNL 100
Query: 242 YTYTILISSYCKYG 255
T ILI+ +C G
Sbjct: 101 VTLNILINCFCHLG 114
>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 589
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + G +L+++ R N +L + ++ L ++G+V EAL F M +
Sbjct: 186 LCKAGDTSGAILYLEKIKGR-NCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQ 244
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD+ AYN +I+ LC G + +A LL M G P+V T+ +L+ ++CK GM
Sbjct: 245 PDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIM--PNVQTFNVLVDNFCKDGM 297
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 165 ELVTTSTVT---CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
++VT ++V CL+ +G+ A+ F M P++ Y+ +I+ C+ N N
Sbjct: 316 DVVTYNSVISGHCLLSQMGD------AVKVFELMIHKGFLPNLVTYSSLIHGWCKTKNIN 369
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
KA FLL +M G PDV T++ LI +CK G
Sbjct: 370 KALFLLGEMVNSGLN--PDVVTWSTLIGGFCKAG 401
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+EA++ F M++ +V YN+V++ +C G N A+ L + G + DV YT
Sbjct: 439 SEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQELFSCLPSKGIKI--DVVAYT 496
Query: 246 ILISSYCKYGM 256
+I CK G+
Sbjct: 497 TMIKGLCKEGL 507
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LI L EG V A ++ + + Y Y +IN LC+ G+ + A L
Sbjct: 140 TVVTFATLINGLCAEGNVARAARFADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYL 199
Query: 228 EQMELPGFRCPPD-VYTYTILISSYCKYGM 256
E+++ G C D V Y+ ++ S CK GM
Sbjct: 200 EKIK--GRNCDLDVVIAYSTIMDSLCKDGM 227
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L M R+G + T L+ ++G+++ A M PDV YN VI+
Sbjct: 269 LLGNMMRKG--IMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISG 326
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C + A + E M GF P++ TY+ LI +CK
Sbjct: 327 HCLLSQMGDAVKVFELMIHKGFL--PNLVTYSSLIHGWCK 364
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +N+A F + + DV AY +I LC+ G + A LL +ME G C P+ +
Sbjct: 471 GKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENG--CLPNEF 528
Query: 243 TYTILI 248
TY + +
Sbjct: 529 TYNVFV 534
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L G EA M + P+V +NV+++ C+ G ++A+ ++ M G
Sbjct: 253 LIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVG 312
Query: 235 FRCPPDVYTYTILISSYC 252
PDV TY +IS +C
Sbjct: 313 VE--PDVVTYNSVISGHC 328
>gi|302763351|ref|XP_002965097.1| hypothetical protein SELMODRAFT_82937 [Selaginella moellendorffii]
gi|300167330|gb|EFJ33935.1| hypothetical protein SELMODRAFT_82937 [Selaginella moellendorffii]
Length = 540
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 7/145 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+++A ++H V T MG+ A + + +EMS G+ +V
Sbjct: 55 VDQALSYFHSVSPRSDLDVVSYTTLIMGL--ADSGRIDVACELFEEMSSSGSQCVVA--- 109
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
T +I L + ++A+A F RM +C PD+ + VVI LC+ G N+A + ++M
Sbjct: 110 YTAIINALFKAHRPDQAIACFERMVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQEMN 169
Query: 232 LPGFRCPPDVYTYTILISSYCKYGM 256
G++ PD+ YT L+ K M
Sbjct: 170 RKGWK--PDIIVYTSLVDGLSKASM 192
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G++ + C+ EG + EAL M + DV Y +I+ L V
Sbjct: 236 REMGKMCAAEVLHCIFGGYVLEGKIEEALTLKDEMVKKGVTLDVRCYTNLIHGLFYVRRN 295
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++A+ + E M G C PD TY +++S +CK G
Sbjct: 296 DEAQEMFEAMVRQG--CVPDTRTYGMIVSHFCKQG 328
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L+EM R +G + T + LI LG+ G +EA+ F M PD + +I AL
Sbjct: 407 LREMRER-DGIVPTIVSYRTLIHGLGKAGRADEAIDVFTEMVDNGVVPDCPSCTSLIQAL 465
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
++A LL M P PD Y L+ C
Sbjct: 466 AMADRMDEATQLLRDM--PRMGITPDALAYNALVKVLC 501
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
DV +YN+VI LC G F++A LL++ME G + T+ I++ + C+
Sbjct: 3 DVASYNIVIRGLCLAGRFSRAYELLKEMEALGIK--KSQVTHGIILKALCE 51
>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
Length = 742
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
GN ++ D ++++ +G V T + LI L + G + AL F MK C PD
Sbjct: 369 GNRLEEALDLARQVTVKGVSPDVYTFNI--LINALCKVGDPHLALRLFEEMKNSGCTPDE 426
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN +I+ LC +G KA LL+ ME G CP TY +I CK
Sbjct: 427 VTYNTLIDNLCSLGKLGKALDLLKDMESTG--CPRSTITYNTIIDGLCK 473
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L +M RG L +T LI L + EAL ++ PDVY +N++INA
Sbjct: 343 ILNQMVDRGC--LPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 400
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+VG+ + A L E+M+ G C PD TY LI + C G
Sbjct: 401 LCKVGDPHLALRLFEEMKNSG--CTPDEVTYNTLIDNLCSLG 440
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V AL M Q PDV+ YN+V+N LC+ G +A+ +L QM G C PD+ T+
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRG--CLPDITTF 359
Query: 245 TILISSYC 252
LI++ C
Sbjct: 360 NTLIAALC 367
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
V CL K G + EA +M C PD+ +N +I ALC +A L Q+
Sbjct: 328 VNCLCK----NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 383
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
+ G PDVYT+ ILI++ CK G
Sbjct: 384 VKGV--SPDVYTFNILINALCKVG 405
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R + V+ L+EMS RG +T T L++ EEG + AL RM + C
Sbjct: 191 LCRAHQVRTAVIMLEEMSSRGVAP--DETTFTTLMQGFVEEGSIEAALRVKARMLEMGCS 248
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
NV+IN C++G A ++Q GF PD TY ++ C+
Sbjct: 249 ATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFE--PDQITYNTFVNGLCQ 298
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N +T + + + ++K D L+ M+ NG V T LI L + G AL
Sbjct: 530 NNITYNSILTHYCKQGDIKKAADILETMT--ANGFEVDVVTYGTLINGLCKAGRTQVALK 587
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M+ RP AYN V+ +L R N A L +M G PPD TY I+
Sbjct: 588 VLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGE--PPDALTYKIVFRG 645
Query: 251 YCKYG 255
C+ G
Sbjct: 646 LCRGG 650
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L ++ +++A +M +P+ YN ++ C+ G+ KA +LE M
Sbjct: 498 TFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM 557
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF DV TY LI+ CK G
Sbjct: 558 TANGFEV--DVVTYGTLINGLCKAG 580
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ VL E + + + M +PDV +N ++ ALCR A +LE+M G
Sbjct: 152 LLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRG 211
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD T+T L+ + + G
Sbjct: 212 V--APDETTFTTLMQGFVEEG 230
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L G + +AL M+ C YN +I+ LC+ +A + +QM
Sbjct: 428 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 487
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+L G + T+ LI CK
Sbjct: 488 DLQGI--SRNAITFNTLIDGLCK 508
>gi|341605745|gb|AEK82975.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RXNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 82
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 83 FK--PDVVTYSVVVNGLCKNG 101
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRXNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 18 HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLIDGYAKSG 66
>gi|341605695|gb|AEK82950.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G ++
Sbjct: 116 NGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDE 175
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISS 250
A L ++ME C VYTYTILIS
Sbjct: 176 AMMLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM +G V + +I L +EG +NE A F M + +P+V Y V+I+
Sbjct: 6 QEMDEKGI--QVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 63
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G+ A LL +M GF+ PDV TY+++++ CK G
Sbjct: 64 KSGSVEDAIRLLHRMIDEGFK--PDVVTYSVVVNGLCKNG 101
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 418
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE ++ N+ L+D EM GNG + T T LI + G ++ A+ +
Sbjct: 217 CKE-----SKMNDANELFD---EMI--GNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKE 266
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M + PD+ YN +I LC+ G+ +A+ L+++M + G + PD TYT LI CK
Sbjct: 267 MLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLK--PDKITYTTLIDGSCKE 324
Query: 255 G 255
G
Sbjct: 325 G 325
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193
TC+++ F + K +W F KE+ G + L+ +EG + A + F
Sbjct: 103 TCRKVLEHFMKLKYFKSVWGFYKEILECGYP--ASLYFFNILMHRFCKEGEMRLAQSVFD 160
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ ++ RP V ++N ++N R+G+ ++ L M G + PDVYTY++LI+ CK
Sbjct: 161 EITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQ--PDVYTYSVLINGLCK 218
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++K D + EMS +G T T LI +EG + A RM + R
Sbjct: 286 LCKEGDLKQAQDLIDEMSMKGLKP--DKITYTTLIDGSCKEGDLETAFKYKKRMIKENIR 343
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D AY +I+ LCR G A +L +M G + PD TYT++I+ +CK G
Sbjct: 344 LDDVAYTALISGLCREGQSVGAEKMLREMLSVGLK--PDNGTYTMIINEFCKKG 395
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++E M +PDVY Y+V+IN LC+ N A L ++M G P+
Sbjct: 185 GDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGL--VPNGV 242
Query: 243 TYTILISSYCKYG 255
T+T LI +CK G
Sbjct: 243 TFTTLIDGHCKTG 255
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
+ G+G T + LI L +E +N+A F M P+ + +I+ C+ G
Sbjct: 196 AMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTG 255
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ + A ++M GF PD+ TY LI CK G
Sbjct: 256 SIDLAMEAYKEMLRQGF--SPDLITYNTLIYGLCKEG 290
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 16/106 (15%)
Query: 156 KEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
KEM R+G + +L+T +T LI L +EG + +A M +PD Y +I+
Sbjct: 265 KEMLRQGFSPDLITYNT---LIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGS 321
Query: 215 CRVGNFN-----KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ G+ K R + E + L D YT LIS C+ G
Sbjct: 322 CKEGDLETAFKYKKRMIKENIRL-------DDVAYTALISGLCREG 360
>gi|449457361|ref|XP_004146417.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g23020-like [Cucumis sativus]
Length = 858
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 67/155 (43%), Gaps = 14/155 (9%)
Query: 105 PQKVTLGI-----NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMS 159
P +VT+GI KA EF ++ FF +C M N K E S
Sbjct: 254 PDEVTMGIVVQLYKKAGEF----QKAESFFKKWSSCNSMKYEI---TNKKKAASVKVESS 306
Query: 160 RRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
++T T LI G+ G + EA TF M + P +N +I+ G
Sbjct: 307 LHPPHVSLSTYTYNTLIDTYGKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICGNHGQ 366
Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+ FL+++ME +CPPD TY ILIS Y K+
Sbjct: 367 LKEVTFLMQKME--ELQCPPDTRTYNILISLYAKH 399
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
TT T +I + G G + E +M++ +C PD YN++I+ + N + A
Sbjct: 350 TTVTFNTMIHICGNHGQLKEVTFLMQKMEELQCPPDTRTYNILISLYAKHDNIDLASNYF 409
Query: 228 EQMELPGFRCPPDVYTYTILISSY 251
+ME G + PD+ +Y L+ +Y
Sbjct: 410 AEMEEAGLQ--PDIVSYRTLLYAY 431
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
S + NG + + + LI++L + ALA +M+ D Y+VVI++ ++G
Sbjct: 549 SMKSNGVVPDKCSYSSLIQILTGADMPAMALAYLKKMQSAGLVSDCIPYSVVISSFSKLG 608
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ A L +M G + PD+ Y +LI+++ G
Sbjct: 609 HLEMADKLYREMVKHGVQ--PDIIVYGVLINAFADAG 643
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 28/131 (21%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
V+ LW EM+++G + ST LI V + G EAL RM + PD
Sbjct: 205 VESLW---VEMNKKGIKPI--NSTYGTLIDVYSKGGFKEEALVWLERMNEQGMEPDEVTM 259
Query: 208 NVVINALCRVGNFNKARFLLEQ-------------------MELPGFRCPPDV----YTY 244
+V+ + G F KA ++ +++ PP V YTY
Sbjct: 260 GIVVQLYKKAGEFQKAESFFKKWSSCNSMKYEITNKKKAASVKVESSLHPPHVSLSTYTY 319
Query: 245 TILISSYCKYG 255
LI +Y K G
Sbjct: 320 NTLIDTYGKAG 330
>gi|449518091|ref|XP_004166077.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g23020-like [Cucumis sativus]
Length = 859
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 67/155 (43%), Gaps = 14/155 (9%)
Query: 105 PQKVTLGI-----NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMS 159
P +VT+GI KA EF ++ FF +C M N K E S
Sbjct: 255 PDEVTMGIVVQLYKKAGEF----QKAESFFKKWSSCNSMKYEI---TNKKKAASVKVESS 307
Query: 160 RRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
++T T LI G+ G + EA TF M + P +N +I+ G
Sbjct: 308 LHPPHVSLSTYTYNTLIDTYGKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICGNHGQ 367
Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+ FL+++ME +CPPD TY ILIS Y K+
Sbjct: 368 LKEVTFLMQKME--ELQCPPDTRTYNILISLYAKH 400
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
TT T +I + G G + E +M++ +C PD YN++I+ + N + A
Sbjct: 351 TTVTFNTMIHICGNHGQLKEVTFLMQKMEELQCPPDTRTYNILISLYAKHDNIDLASNYF 410
Query: 228 EQMELPGFRCPPDVYTYTILISSY 251
+ME G + PD+ +Y L+ +Y
Sbjct: 411 AEMEEAGLQ--PDIVSYRTLLYAY 432
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
S + NG + + + LI++L + ALA +M+ D Y+VVI++ ++G
Sbjct: 550 SMKSNGVVPDKCSYSSLIQILTGADMPAMALAYLKKMQSAGLVSDCIPYSVVISSFSKLG 609
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ A L +M G + PD+ Y +LI+++ G
Sbjct: 610 HLEMADKLYREMVKHGVQ--PDIIVYGVLINAFADAG 644
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 28/131 (21%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
V+ LW EM+++G + ST LI V + G EAL RM + PD
Sbjct: 206 VESLW---VEMNKKGIKPI--NSTYGTLIDVYSKGGFKEEALVWLERMNEQGMEPDEVTM 260
Query: 208 NVVINALCRVGNFNKARFLLEQ-------------------MELPGFRCPPDV----YTY 244
+V+ + G F KA ++ +++ PP V YTY
Sbjct: 261 GIVVQLYKKAGEFQKAESFFKKWSSCNSMKYEITNKKKAASVKVESSLHPPHVSLSTYTY 320
Query: 245 TILISSYCKYG 255
LI +Y K G
Sbjct: 321 NTLIDTYGKAG 331
>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like, partial [Glycine max]
Length = 594
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+EM RG E T ++K G+EG +NEA +M + PD + YN +IN
Sbjct: 194 LLEEMKSRGGVE-PNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMING 252
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C+ G +A ++++M G + PD+ T ++ + C
Sbjct: 253 FCKAGKLGEAFRMMDEMARKGLK--PDICTLNTMLHTLC 289
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+K L +EG ++EA+ M+ + PDV YN +I+ + + LLE+M
Sbjct: 139 TYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLLEEM 198
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G P+ T+ I++ + K G
Sbjct: 199 KSRG-GVEPNAVTHNIMVKWFGKEG 222
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLV 185
+ +EVT + + + +G +EM +RG + S V+ LI+ L G
Sbjct: 309 YILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRG----IVPSVVSYNPLIRGLCLSGKT 364
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
++A+ + + PD + N++I+ C G +KA +M F+ PD++T
Sbjct: 365 DQAVDKLNELLEKGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFK--PDIFTRN 422
Query: 246 ILISSYCKYGM 256
IL+ C+ M
Sbjct: 423 ILLRGLCRVDM 433
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
DV YN +I+ LC+ G ++A L+ ME+ F PD YTY ++ + G
Sbjct: 452 DVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFE--PDQYTYNAIVRALTHAG 502
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 119 YHW---VERFFHFFHNEVTCKEMGIVFARGNNVKGLW--DFLKE--------MSRRGNGE 165
Y W V++ F F + V +F R ++GL D L++ +S++ + +
Sbjct: 393 YCWEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLCRVDMLEKAFKLFNSWISKQNSVD 452
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
+VT +T +I L +EG ++EA M+ + PD Y YN ++ AL G +A
Sbjct: 453 VVTYNT---MISYLCKEGRLDEAFDLMTDMEVKKFEPDQYTYNAIVRALTHAGRTEEAEK 509
Query: 226 LLEQMELPG 234
+ ++ G
Sbjct: 510 FMSKLSETG 518
>gi|242095134|ref|XP_002438057.1| hypothetical protein SORBIDRAFT_10g007440 [Sorghum bicolor]
gi|241916280|gb|EER89424.1| hypothetical protein SORBIDRAFT_10g007440 [Sorghum bicolor]
Length = 499
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CK+ I AR +EM R G + T LI L G V+EA+
Sbjct: 305 CKKADIEAARS--------VFEEM--RNAGVEPDAVSYTALIGCLCRHGSVDEAINLVLE 354
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
MKQ CR DV YN+VI LCR G +A LLE + L G + +V +Y IL++ C
Sbjct: 355 MKQKGCRADVVTYNLVIEGLCRDGRTVEAMDLLESVPLEGVKL--NVASYRILMNCLCSR 412
Query: 255 G 255
G
Sbjct: 413 G 413
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G V++A A F MK+ C P+ + Y +IN C+ + AR + E+M G PD
Sbjct: 273 GQVDKARAIFGFMKKNDCEPNAFNYATLINGHCKKADIEAARSVFEEMRNAGVE--PDAV 330
Query: 243 TYTILISSYCKYG 255
+YT LI C++G
Sbjct: 331 SYTALIGCLCRHG 343
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGE----LVTTSTVTCLIKVLGEEGLVNEALATFYRM-K 196
F R ++ + L EM + LVT ST LI L G + EA F M +
Sbjct: 195 FVRIGELETAFKVLDEMREYTCADVKPNLVTYST---LIAGLCRGGKMMEAFELFEEMIE 251
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ R PD YNV+I+ CR+G +KAR + M+ C P+ + Y LI+ +CK
Sbjct: 252 KDRIVPDQLLYNVIIDGFCRLGQVDKARAIFGFMK--KNDCEPNAFNYATLINGHCK 306
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRC---RPDVYAYNVVINALCRVGNFNKARF 225
T LIK G + A M+++ C +P++ Y+ +I LCR G +A
Sbjct: 185 TCVYNILIKHFVRIGELETAFKVLDEMREYTCADVKPNLVTYSTLIAGLCRGGKMMEAFE 244
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L E+M + R PD Y ++I +C+ G
Sbjct: 245 LFEEM-IEKDRIVPDQLLYNVIIDGFCRLG 273
>gi|224576653|gb|ACN57000.1| At1g03560-like protein [Capsella grandiflora]
Length = 207
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 84 RFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 143
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++A L ++ME C VYTYTILIS K
Sbjct: 144 DEAMTLFKRMEEEE-GCDQTVYTYTILISGMFK 175
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +NE A F M + +P+V Y V+I+ + G+ A LL +M GF+ PDV
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK--PDVV 58
Query: 243 TYTILISSYCKYG 255
TY+++++ CK G
Sbjct: 59 TYSVVVNGLCKNG 71
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 39/133 (29%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC-- 215
M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+N LC
Sbjct: 13 MIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKN 70
Query: 216 ---------------------------------RVGNFNKARFLLEQMELPGFRCPPDVY 242
+ G ++A L E+M G C D Y
Sbjct: 71 GRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG--CTRDSY 128
Query: 243 TYTILISSYCKYG 255
Y LI + K+G
Sbjct: 129 CYNALIDALTKHG 141
>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
Length = 720
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
TST +I LG G EA A F MK+ +P + A+N ++ R G+ +A ++
Sbjct: 316 TSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIIS 375
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+ME G PD +TY +L+ +Y G
Sbjct: 376 EMEKSGLS--PDEHTYGLLVDAYANVG 400
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 28/190 (14%)
Query: 77 PLKQRILKK------EADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFH 130
PL Q++ ++ E D + N ++LG A +P N+A F V+
Sbjct: 263 PLLQKLYEEIESDKIELDGLLLNDIILGFAKAGDP-------NRALYFLSMVQASGL--- 312
Query: 131 NEVTCKEMGIVFARGNN-----VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLV 185
N T + ++ A GN+ + +++ +KE G L+K +G +
Sbjct: 313 NPKTSTFVAVISALGNHGRTEEAEAIFEEMKE-----GGLKPRIKAFNALLKGYARKGSL 367
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
EA + M++ PD + Y ++++A VG + AR LL+QME + P+ + ++
Sbjct: 368 KEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQ--PNTFIFS 425
Query: 246 ILISSYCKYG 255
+++SY G
Sbjct: 426 RILASYRDRG 435
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ LI GE+ EA + MK+ +PDV Y ++ AL RV F+K + E+M
Sbjct: 633 ALNSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTLMKALIRVDKFDKVPAVYEEM 692
Query: 231 ELPGFRCPPDVYTYTILISS 250
L G C PD +L S+
Sbjct: 693 ILSG--CTPDGKARAMLRSA 710
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ +EM RG L +T +I LGE+ +E +M+ P+V Y +++
Sbjct: 512 ELFEEMQERGY--LPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVD 569
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
G FN A LE M+ G + P Y LI+++ + G+
Sbjct: 570 IYGHSGRFNDAIDCLEAMKSAGLK--PSATMYNALINAFAQRGL 611
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
+I G+ ++ A+ T+ RM PDV +N +I+ + G ++A L E+M+
Sbjct: 461 VMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQER 520
Query: 234 GFR-CPPDVYTYTILISS 250
G+ CP TY I+I+S
Sbjct: 521 GYLPCPT---TYNIMINS 535
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 152 WDFLKEM--SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
WD +K + + G L T T L+ + G G N+A+ MK +P YN
Sbjct: 542 WDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNA 601
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+INA + G +A M G R P + LI+++
Sbjct: 602 LINAFAQRGLSEQAVNAYRVMISDGLR--PSLLALNSLINAF 641
>gi|341605697|gb|AEK82951.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G ++
Sbjct: 116 NGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDE 175
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISS 250
A L ++ME C VYTYTILIS
Sbjct: 176 AMMLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM +G V + +I L +EG +NE A F M + +P+V Y V+I+
Sbjct: 6 QEMDEKGI--QVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 63
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G+ A LL +M GF+ PDV TY+++++ CK G
Sbjct: 64 KSGSVEDAIRLLHRMIDEGFK--PDVVTYSVVVNGLCKNG 101
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + V+ + +EMS+RG G VT +T LI+ L + G + A F +M
Sbjct: 406 FCKAKRVEEGMELFREMSQRGLVGNTVTYNT---LIQGLFQAGDCDMAQKIFKKMVSDGV 462
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ Y+++++ LC+ G KA + E ++ + P++YTY I+I CK G
Sbjct: 463 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKS--KMEPNIYTYNIMIEGMCKAG 515
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ M RG +L T TV + L + G ++ AL+ +M++ + +V YN +I+
Sbjct: 208 LIDRMVARGCQPDLFTYGTV---VNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIID 264
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ + + A L +ME G + PDV+TY LIS C YG
Sbjct: 265 GLCKYKHMDDAFDLFNKMETKGIK--PDVFTYNSLISCLCNYG 305
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ L + G + +AL F +++ + P++Y YN++I +C+ G L +
Sbjct: 468 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSL 527
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQ 257
L G + P+V YT +IS +C+ G++
Sbjct: 528 SLKGVK--PNVIIYTTMISGFCRKGLK 552
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI L +EA+A RM C+PD++ Y V+N LC+ G+ + A LL+
Sbjct: 186 TVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLK 245
Query: 229 QMELPGFRCPPDVYTYTILISSYCKY 254
+ME + +V Y +I CKY
Sbjct: 246 KMEKG--KIEANVVIYNTIIDGLCKY 269
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LIK + V E + F M Q + YN +I L + G+ + A+ + ++M
Sbjct: 398 TYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 457
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PPD+ TY+IL+ CKYG
Sbjct: 458 VSDGV--PPDIITYSILLDGLCKYG 480
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI +EG + EA F M Q P++ YN +IN C ++A+ + M
Sbjct: 328 TFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLM 387
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C PDV TY LI +CK
Sbjct: 388 --VSKDCLPDVVTYNTLIKGFCK 408
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A F +M+ +PDV+ YN +I+ LC G ++ A LL M + P+V T+
Sbjct: 272 MDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDM--IERKINPNVVTF 329
Query: 245 TILISSYCKYG 255
LI ++ K G
Sbjct: 330 NSLIDAFAKEG 340
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+A +M + +PD +N +I+ L ++A L+++M G C PD++TY
Sbjct: 167 ISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARG--CQPDLFTY 224
Query: 245 TILISSYCKYG 255
+++ CK G
Sbjct: 225 GTVVNGLCKRG 235
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 19/102 (18%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+D+ +++SR G EL +++A+A F M + R P + ++ ++
Sbjct: 46 YDYREKLSRNGLSELK-----------------LDDAVALFGEMVKSRPFPSIIEFSKLL 88
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+A+ ++ F+ L EQM+ G P + YTY+IL++ +C+
Sbjct: 89 SAIAKMNKFDVVISLGEQMQNLGI--PHNHYTYSILLNCFCR 128
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ V+ WD +S +G V T +I +GL EA A F MK+ PD
Sbjct: 513 KAGKVEDGWDLFCSLSLKGVKPNVIIYTT--MISGFCRKGLKEEADALFREMKEDGTLPD 570
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
YN +I A R G+ + L+++M GF D T +++I+
Sbjct: 571 SGCYNTLIRARLRDGDKAASAELIKEMRSCGF--VGDASTISMVIN 614
>gi|224576649|gb|ACN56998.1| At1g03560-like protein [Capsella grandiflora]
Length = 196
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G ++
Sbjct: 86 NGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDE 145
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A L ++ME C VYTYTILIS K
Sbjct: 146 AMXLFKRMEEEE-GCDQTVYTYTILISGMFK 175
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +NE A F M + +P+V Y V+I+ + G+ A LL +M GF+ PDV
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK--PDVV 58
Query: 243 TYTILISSYCKYG 255
TY+++++ CK G
Sbjct: 59 TYSVVVNGLCKNG 71
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 39/133 (29%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC-- 215
M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+N LC
Sbjct: 13 MIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKN 70
Query: 216 ---------------------------------RVGNFNKARFLLEQMELPGFRCPPDVY 242
+ G ++A L E+M G C D Y
Sbjct: 71 GRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG--CTRDSY 128
Query: 243 TYTILISSYCKYG 255
Y LI + K+G
Sbjct: 129 CYNALIDALTKHG 141
>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
Length = 694
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F++ ++ + + EM R G + T++ + +EGLV EA+ F +M+
Sbjct: 279 FSKFGWIEKAYSYFGEMKRLG--VMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMM 336
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ + Y +++ C+ G + A LL++M G P+V TYT+++ CK G
Sbjct: 337 PNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGL--VPNVVTYTVMVDGLCKEG 388
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L ++G + EA A F RMK C PDV YN +I+ + G + L+ +M
Sbjct: 201 TFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEM 260
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C DV TY LI+ + K+G
Sbjct: 261 RKSG--CAADVVTYNALINCFSKFG 283
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 33/117 (28%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRC----------------------------- 200
S L+ +L + GL+++A+ R++Q R
Sbjct: 134 SVFDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFEH 193
Query: 201 --RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V+ +N+VI+ LC+ G +AR L +M+ G C PDV TY LI Y K G
Sbjct: 194 LPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMG--CSPDVVTYNSLIDGYGKCG 248
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + G + EA++ F +M++ P+V Y +I+ C++G+ +KA L+ +M
Sbjct: 516 TYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEM 575
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G D YT LI + K G
Sbjct: 576 VDKGMSL--DKVVYTSLIDGHMKQG 598
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T ++ + G +EA+A +++ +P+V Y +I+ LC+ G+ +A +
Sbjct: 479 TVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFD 538
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M G P+V YT LI +CK G
Sbjct: 539 KMRELGL--DPNVQVYTTLIDGFCKIG 563
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+ EM + G V T LI + G + +A + F MK+ +V + ++A
Sbjct: 256 LVSEMRKSGCAADVVTYNA--LINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDA 313
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ G +A L QM + G P+ +TYT L+ CK G
Sbjct: 314 FCKEGLVREAMKLFAQMRVRGMM--PNEFTYTSLVDGTCKAG 353
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 11/137 (8%)
Query: 119 YHWVERFFHFF---------HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTT 169
+ W+E+ + +F N VT F + V+ +M RG +
Sbjct: 282 FGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRG--MMPNE 339
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T T L+ + G +++A+ M P+V Y V+++ LC+ G A +L
Sbjct: 340 FTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSL 399
Query: 230 MELPGFRCPPDVYTYTI 246
ME G + +YT I
Sbjct: 400 MERAGVKANELLYTTLI 416
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI G+ G + E M++ C DV YN +IN + G KA +M
Sbjct: 236 TYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEM 295
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
+ G +V T + + ++CK G+
Sbjct: 296 KRLGVM--ANVVTLSTFVDAFCKEGL 319
>gi|399107208|gb|AFP20368.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 116 RFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 175
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 176 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 204
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 25 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 84
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 85 FK--PDVVTYSVVVNGLCKNG 103
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 39 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 96
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 97 NGLCKNGXVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 154
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 155 CTRDSYCYNALIDALTKHG 173
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+A + M + + + +++VI LC+ G N+ + E M G + P+V YT+LI
Sbjct: 4 VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLI 61
Query: 249 SSYCKYG 255
Y K G
Sbjct: 62 DGYAKSG 68
>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
Length = 600
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLG-----EEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
KEM +RG V + VT I V G +EG + EA+ F M + PDV Y+ +
Sbjct: 422 KEMLKRG----VKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSAL 477
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
I+ L + G + AR LL ME G C P+VYTY LIS C
Sbjct: 478 IDGLGKAGKLDDARRLLGAMEAKG--CIPNVYTYNSLISGLC 517
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T I L + G V +AL M + C PDV ++N VIN LC+ ++A LL M
Sbjct: 330 TYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGM 389
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G C P+ ++ LI C+ G
Sbjct: 390 EAKG--CSPNAISFNTLICGQCRAG 412
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T + LI LG+ G +++A M+ C P+VY YN +I+ LC + ++A
Sbjct: 466 GRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEA 525
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L M G C PD TY +IS+ CK M
Sbjct: 526 LELFVAMVEKG--CVPDTITYGTIISALCKQEM 556
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L +E VNEA F + + PD Y V I+ LC+ G A +L+ M
Sbjct: 295 TYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDM 354
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ G C PDV ++ +I+ CK
Sbjct: 355 DEKG--CVPDVVSHNAVINGLCK 375
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L G +++A A + RM + PDV YN +++ C+VG ++A + +
Sbjct: 87 TYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGA 146
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
GF PDV TY LI+ +CK
Sbjct: 147 VKRGF--VPDVVTYNALINGFCK 167
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA RM PDV YN ++N LC+ G ++AR L+ GF P+V TY
Sbjct: 171 LDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVD---KGF--SPNVITY 225
Query: 245 TILISSYCK 253
+ LIS C+
Sbjct: 226 STLISGLCR 234
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
F++++ +G L ST I L + +A F M++ P+ YN +++
Sbjct: 38 FVEQLLVKG---LCDISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSG 94
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC G + A+ L E+M G+ PDV TY L+ +CK G
Sbjct: 95 LCNGGRMSDAQALYERMIKAGY--SPDVVTYNTLLHGFCKVG 134
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
LK+M +G V + +I L +E V+EA M+ C P+ ++N +I
Sbjct: 350 MLKDMDEKGCVPDVVSHNA--VINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICG 407
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
CR G + KA ++M G + P V TY IL+ CK
Sbjct: 408 QCRAGKWKKAMTTFKEMLKRGVK--PTVVTYNILVDGLCK 445
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++EAL F + PDV YN +IN C+ ++A+ +L++M PDV
Sbjct: 134 GKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESL--VPDVV 191
Query: 243 TYTILISSYCKYG 255
TY L++ CK G
Sbjct: 192 TYNSLVNGLCKNG 204
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L E V+EAL F + + P+V YN++I+ L + N+A L + G
Sbjct: 264 LIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHG 323
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD TYT+ I CK G
Sbjct: 324 LE--PDAITYTVFIDGLCKAG 342
>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
Length = 703
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L+EM +G V T T +I +EG +++AL MK C+P+V+ YN ++
Sbjct: 168 EMLQEMFEKGLAPCVVTCTA--VINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQ 225
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C G +KA LL +M + G PD TY +LI C G
Sbjct: 226 GFCNEGKVHKAMALLNKMRVCGVN--PDAVTYNLLIRGQCIDG 266
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G+G + T LI L ++G ++A + F ++ +P+ +N +IN LC+ G +
Sbjct: 280 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVD 339
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A LE+M G C PD YTY+ I CK
Sbjct: 340 IAWKFLEKMVSAG--CTPDTYTYSSFIEHLCK 369
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L++ EG V++A+A +M+ PD YN++I C G+ A LL M
Sbjct: 219 TYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLM 278
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G D YTY LI++ CK G
Sbjct: 279 EGDGL--IADQYTYNALINALCKDG 301
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I+ L + AL M + RPD Y +N +I CR + AR L ++M
Sbjct: 13 TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L GF DV +Y LI +C+ G
Sbjct: 73 PLRGF--AQDVVSYAALIEGFCETG 95
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R N V D +M RG + V + LI+ E G ++EA+ F M Q
Sbjct: 56 YCRTNQVDVARDLFDKMPLRGFAQDVVSYAA--LIEGFCETGRIDEAVELFGEMDQ---- 109
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
PD++ Y ++ LC+ G + +L +M+ G+R P Y ++ C
Sbjct: 110 PDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWR--PSTRAYAAVVDFRC 158
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 37/116 (31%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY--------------------------- 207
L+K L + G E L RMK+ RP AY
Sbjct: 118 LVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKG 177
Query: 208 --------NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
VINA C+ G + A +LE M+L G C P+V+TY L+ +C G
Sbjct: 178 LAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRG--CKPNVWTYNALVQGFCNEG 231
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
+G + A M+ D Y YN +INALC+ G ++A L + +E G + P+
Sbjct: 265 DGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIK--PNA 322
Query: 242 YTYTILISSYCKYG 255
T+ LI+ CK G
Sbjct: 323 VTFNSLINGLCKSG 336
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + + V W FL++M G T T + I+ L + E L+
Sbjct: 321 NAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTP--DTYTYSSFIEHLCKMKGSQEGLS 378
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M Q +P Y +VI+ L + N+ +M G C PDV TYT + +
Sbjct: 379 FIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSG--CNPDVVTYTTSMRA 436
Query: 251 YCKYG 255
YC G
Sbjct: 437 YCIEG 441
>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 512
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
EM RR +G+LV V +I + ++ LVN+A + M R P V YN +I L
Sbjct: 195 EMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGL 254
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C +G A LL +M L P VYT++IL+ ++CK G
Sbjct: 255 CIMGQLKDAIGLLHKMILENIN--PTVYTFSILVDAFCKEG 293
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T + L+ +EG V EA F M + +P++ YN ++N C V NKA +
Sbjct: 278 TVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIF 337
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
M G PDV++Y+I+IS +CK M
Sbjct: 338 NTMAQIGV--APDVHSYSIMISGFCKIKM 364
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+ EM RG + T L+ L + V++A+ ++K +P V YN++IN
Sbjct: 406 LIGEMHDRGQPPNIIT--YNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILING 463
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G A+ + E + + G+ DVYTY +I +CK G
Sbjct: 464 LCKSGRLKDAQKVFEDVLVNGYNI--DVYTYNTMIKGFCKKG 503
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
VN+A + F M Q PDV++Y+++I+ C++ ++A L E+M + PDV TY
Sbjct: 330 VNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCK--QIFPDVVTY 387
Query: 245 TILISSYCKYG 255
LI CK G
Sbjct: 388 NSLIDGLCKSG 398
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 148 VKGLWDFLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
V +DF EM ++R +VT +T+ C + ++G+ + +A+ ++M P VY
Sbjct: 225 VNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQ---LKDAIGLLHKMILENINPTVYT 281
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
++++++A C+ G +A+ + M + P++ TY L++ YC
Sbjct: 282 FSILVDAFCKEGKVKEAKNVFVVMMKKDVK--PNIVTYNSLMNGYC 325
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
+V+EA+ F M + PDV YN +I+ LC+ G + A L+ +M G PP++ T
Sbjct: 364 MVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRG--QPPNIIT 421
Query: 244 YTILISSYCK 253
Y L+ + CK
Sbjct: 422 YNSLLDALCK 431
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + G ++ AL M P++ YN +++ALC+ + +KA LL +
Sbjct: 386 TYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTK- 444
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L P V TY ILI+ CK G
Sbjct: 445 -LKDHNIQPSVCTYNILINGLCKSG 468
>gi|343887304|dbj|BAK61850.1| PPR containing protein [Citrus unshiu]
Length = 567
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V R N++K +F ++ + N ST T +I+ + G++ A F M
Sbjct: 167 VLVRVNSIKLAEEFFHQIVKE-NVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMT---V 222
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P++ AYN +IN C+ G+ AR + ++M + G C P+ TYT LI YCK G
Sbjct: 223 KPNLLAYNTMINGFCKKGDMESARLVFDRM-MSGEDCLPNHVTYTTLIDGYCKKG 276
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
++ LIK G+ G V A+ F++ KQ +Y+YN ++ L RV + A Q+
Sbjct: 126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIV 185
Query: 232 LPGFRCPPDVYTYTILISSYCKYGM 256
PPDV TYT +I YCK GM
Sbjct: 186 KENV-VPPDVSTYTTMIRGYCKMGM 209
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI ++G + EA M CRP+ YN +I LC G ++A+ L+ +M
Sbjct: 264 TYTTLIDGYCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKM 323
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L GF+ +V T+ ++ C G
Sbjct: 324 RLNGFK--DNVSTHKSMLKGLCVVG 346
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
LKEM R G T + + ++L E G ++ A+ +M Q C P+ +YN +I
Sbjct: 389 LLKEM--RARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICG 446
Query: 214 LCRV-GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC G L+++M G D Y+ L+ YC+ G
Sbjct: 447 LCMAKGRMQDVEDLVDRMIRSGHNL--DFTMYSCLLKGYCEEG 487
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG ST ++K L G ++A+ + + PDV +Y VVIN C++G
Sbjct: 324 RLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKS 383
Query: 221 NKARFLLEQMELPGFRCPPDVYTY 244
++A LL++M G + P V+++
Sbjct: 384 DEAISLLKEMRARGLK--PTVFSF 405
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 155 LKEMSRRGN--GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ EM RG EL T +I L G V+EA +M+ + +V + ++
Sbjct: 285 MNEMMNRGCRPNEL----TYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLK 340
Query: 213 ALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC VG F++A +L ME PDV +Y ++I+ +CK G
Sbjct: 341 GLCVVGKFDQAVGYLRNVMEA---NMNPDVKSYEVVINGFCKIG 381
>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 701
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T T ++ L E GLVN A+ F +M +P++ + +I+ LC+ G+ +A +LE+
Sbjct: 253 ATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEE 312
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M G++ P+VYT+T LI CK G
Sbjct: 313 MVRNGWK--PNVYTHTALIDGLCKRG 336
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRC 200
+ ++K ++ L+EM R NG T T LI L + G +A F ++ +
Sbjct: 297 LCKKGSIKQAFEMLEEMVR--NGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTY 354
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P+V+ Y +I C+ N+A L +M+ G P+V TYT LI+ +CK G
Sbjct: 355 KPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLF--PNVNTYTTLINGHCKAG 407
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I +E +N A F RMK+ P+V Y +IN C+ G+F +A L+ M
Sbjct: 360 TYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLM 419
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
GF P++YTY I S CK
Sbjct: 420 GDEGFM--PNIYTYNAAIDSLCK 440
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T T +I +EG ++ AL F+ MK+ C PD + Y +I+ LC+ ++A
Sbjct: 528 GLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEA 587
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
L E M G PP+V T L YCK
Sbjct: 588 CKLYEAMIDRGLS-PPEV-TRVTLAYEYCK 615
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQME 231
T LI L ++G + +A M + +P+VY + +I+ LC+ G KA R L+ +
Sbjct: 291 TSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVR 350
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
++ P+V+TYT +I YCK
Sbjct: 351 SDTYK--PNVHTYTSMIGGYCK 370
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ ++ +N+ALA F RM + D+ N++I A CR ++ L + +
Sbjct: 465 TYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLV 524
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P TYT +IS YCK G
Sbjct: 525 VSLGL--IPTKETYTSMISCYCKEG 547
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
M + G ++ T+ C++++ E GL+ A F M PD +Y +++ R
Sbjct: 171 MDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRD 230
Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
G +A L M GF PD T T+++++ C+ G+
Sbjct: 231 GKIQEADRWLTGMIQRGF--IPDNATCTLILTALCENGL 267
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 22/81 (27%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ ++G+EG + P++Y YN I++LC+ +A LL +
Sbjct: 415 LMNLMGDEGFM----------------PNIYTYNAAIDSLCKKSRAPEAYELLNK----A 454
Query: 235 FRC--PPDVYTYTILISSYCK 253
F C D TYTILI CK
Sbjct: 455 FSCGLEADGVTYTILIQEQCK 475
>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
Length = 948
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 164 GELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
GE + S +C LI G VN+AL M Q PD+ YN +IN LC++G F
Sbjct: 575 GEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQ 634
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+A L ++ G PD TY LIS YC G+
Sbjct: 635 EALNLFNGLQAKGIH--PDAVTYNTLISRYCYEGL 667
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRC 200
F N V L++M++ G V S + LI L E VNEA+ M C
Sbjct: 210 FCMVNEVDSACSLLRDMTKHG---CVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGC 266
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV +N VI+ LC+ G ++A L ++M L F + Y L+ C+ G
Sbjct: 267 EPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGY--LMHGLCRMG 319
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 49/130 (37%), Gaps = 33/130 (25%)
Query: 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
S G + T CLI L ++G + +AL + M C+PD+Y +N +I LC+
Sbjct: 432 SMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKND 491
Query: 219 NFNKARFLLEQMELPG--------------------------------FR-CPPDVYTYT 245
+A L M L G FR CP D TY
Sbjct: 492 KMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYN 551
Query: 246 ILISSYCKYG 255
LI + CK G
Sbjct: 552 GLIKALCKTG 561
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD + +N++I+ LC+ G A L++M GF P+V TYTILI +CK G
Sbjct: 369 EPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFE--PNVITYTILIDGFCKQG 421
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+FL EM ++G V T T+ LI ++G EA M + YN +I
Sbjct: 393 EFLDEMVKKGFEPNVITYTI--LIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIG 450
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
ALC+ G A + +M G C PD+YT+ LI CK
Sbjct: 451 ALCKDGKIQDALQMYGEMSSKG--CKPDIYTFNSLIYGLCK 489
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LIK L + G + L +M P + + N++IN+ CR G N A L M
Sbjct: 549 TYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDM 608
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PD+ TY LI+ CK G
Sbjct: 609 IQRGL--TPDIVTYNSLINGLCKMG 631
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
F R V FL++M +RG +T VT LI L + G EAL F ++
Sbjct: 592 FCRTGKVNDALQFLRDMIQRG----LTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKG 647
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD YN +I+ C G FN A LL + GF P+ T++ILI+ + K
Sbjct: 648 IHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGF--IPNEITWSILINYFVK 699
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ GN K + +M RG V T V ++K V+ A + M + C
Sbjct: 174 ILVAGNCPKVAPNVFYDMLSRGISPTVYTFGV--VMKAFCMVNEVDSACSLLRDMTKHGC 231
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ Y ++I+AL N+A LLE+M L G C PDV T+ +I CK G
Sbjct: 232 VPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMG--CEPDVQTFNDVIHGLCKAG 284
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T LI L+ +A M+ C D YN +I ALC+ G K
Sbjct: 507 GVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKC 566
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L+EQM G P + + ILI+S+C+ G
Sbjct: 567 LGLIEQM--FGEEIFPSINSCNILINSFCRTG 596
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL-EQMELP 233
L+ L G V+EA A ++ P+ YN +IN G F +A+ LL + M +
Sbjct: 311 LMHGLCRMGKVDEARAMLSKIPN----PNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIA 366
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
GF PD +T+ I+I CK G
Sbjct: 367 GFE--PDAFTFNIMIDGLCKKG 386
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L ++G + AL M + P+V Y ++I+ C+ G+F +A ++ M
Sbjct: 374 TFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSM 433
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + Y LI + CK G
Sbjct: 434 SAKGLSL--NTVGYNCLIGALCKDG 456
>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 418
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 153 DFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
D EM +G NG T T LI + G V+ A+ T+ +M PD+ YN
Sbjct: 227 DLFNEMLDKGLVPNG-----VTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNT 281
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+I LC+ G+ +A+ LL++M + G + PD TYT LI CK G
Sbjct: 282 LIYGLCKKGDLKQAQDLLDEMRMKGLK--PDKITYTTLIDGNCKEG 325
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193
TC+++ + K +W F KE+ G + + L+ +EG + A + F
Sbjct: 103 TCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNI--LMHRFCKEGEIWIAQSVFD 160
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ ++ RP V ++N ++N R+G+ ++ L M G + PDVYTY++LI+ CK
Sbjct: 161 SITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQ--PDVYTYSVLINGLCK 218
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++K D L EM R G T T LI +EG ++ A M + R
Sbjct: 286 LCKKGDLKQAQDLLDEM--RMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIR 343
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
D AY +I+ LC+ G A +L +M G + PD TYT++I+ +CK
Sbjct: 344 LDDVAYTALISGLCQEGRATDAEKMLREMLSVGLK--PDNGTYTMIINEFCK 393
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PDVY Y+V+IN LC+ N+A L +M G P+ T+T LI +CK G
Sbjct: 203 QPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGL--VPNGVTFTTLIDGHCKNG 255
>gi|399107204|gb|AFP20366.1| At1g03560-like protein, partial [Capsella grandiflora]
gi|399107210|gb|AFP20369.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 116 RFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 175
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 176 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 204
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 25 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 84
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 85 FK--PDVVTYSVVVNGLCKNG 103
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 39 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 96
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 97 NGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 154
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 155 CTRDSYCYNALIDALTKHG 173
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+A + M + + + +++VI LC+ G N+ + E M G + P+V YT+LI
Sbjct: 4 VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLI 61
Query: 249 SSYCKYG 255
Y K G
Sbjct: 62 DGYAKSG 68
>gi|242073718|ref|XP_002446795.1| hypothetical protein SORBIDRAFT_06g022830 [Sorghum bicolor]
gi|241937978|gb|EES11123.1| hypothetical protein SORBIDRAFT_06g022830 [Sorghum bicolor]
Length = 468
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 6/142 (4%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F+ W H + + + + +WD ++ M + G G LV+ +T
Sbjct: 68 AVRFFRWAG--LSLSHTAYAWNLLVDILGKAAMFEPMWDAIRSMHQEGGGRLVSVATFAS 125
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV-GNFNKARFLLEQMELP 233
+ G + +A+A M ++ +PD A N +++A+CRV G A + E+ +
Sbjct: 126 VFASYCASGNLKDAIAALDVMDRYGLKPDAVALNSLLSAICRVEGRAQAAHDVFERTKAT 185
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
PPD T+ IL+ + K G
Sbjct: 186 ---IPPDADTFAILLEACEKEG 204
>gi|224576657|gb|ACN57002.1| At1g03560-like protein [Capsella grandiflora]
Length = 207
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 84 RFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 143
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++A L ++ME C VYTYTILIS K
Sbjct: 144 DEAMTLFKRMEEEE-GCDQTVYTYTILISGMFK 175
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +NE A F M + +P+V Y V+I+ + G+ A LL +M GF+ PDV
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK--PDVV 58
Query: 243 TYTILISSYCKYG 255
TY+++++ CK G
Sbjct: 59 TYSVVVNGLCKNG 71
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 39/133 (29%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC-- 215
M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+N LC
Sbjct: 13 MIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKN 70
Query: 216 ---------------------------------RVGNFNKARFLLEQMELPGFRCPPDVY 242
+ G ++A L E+M G C D Y
Sbjct: 71 GRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG--CTRDSY 128
Query: 243 TYTILISSYCKYG 255
Y LI + K+G
Sbjct: 129 CYNALIDALTKHG 141
>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 756
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F +V+G +KE+ EL T+ +V L+ L +EG + EAL Y + F C
Sbjct: 244 FIEEADVEGALR-IKELMVESGCEL-TSVSVNVLVNGLCKEGRIEEALRFIYEEEGF-C- 299
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD +N ++N LCR G+ + +++ M GF DVYTY LIS CK G
Sbjct: 300 PDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFEL--DVYTYNSLISGLCKLG 351
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 111 GINKATEFYHWVERFFHFFH-----NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE 165
G+ K E VE H N VT + + N+V+ + + ++ +G
Sbjct: 346 GLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGV-- 403
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
L T LI+ L A+ F MK+ C PD + Y+++I +LC +A
Sbjct: 404 LPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALM 463
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCK 253
LL++MEL G C +V Y LI CK
Sbjct: 464 LLKEMELSG--CARNVVVYNTLIDGLCK 489
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
+ N V D +M G V+ S+VT LI L + V EA +M
Sbjct: 487 LCKNNRVGDAEDIFDQMEMLG----VSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEG 542
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD + Y ++ C+ G+ +A +++ M L G C PD+ TY LI CK G
Sbjct: 543 LKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNG--CEPDIVTYGTLIGGLCKAG 596
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
LKEM G V LI L + V +A F +M+ YN +IN
Sbjct: 464 LLKEMELSGCARNVVVYNT--LIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLING 521
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ +A L++QM + G + PD +TYT ++ +C+ G
Sbjct: 522 LCKSKRVEEAAQLMDQMIMEGLK--PDKFTYTTMLKYFCQQG 561
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ +EM +G T + LI+ L E + EAL M+ C +V YN +I
Sbjct: 427 MELFEEMKEKGCDP--DEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLI 484
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ LC+ A + +QME+ G TY LI+ CK
Sbjct: 485 DGLCKNNRVGDAEDIFDQMEMLGVS--RSSVTYNTLINGLCK 524
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T ++K ++G + A M C PD+ Y +I LC+ G + A LL +
Sbjct: 549 TYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSV 608
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
++ G P Y +I + CK
Sbjct: 609 QMKGMVLTPQAYNP--VIQALCK 629
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 42/137 (30%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+ DF+ E G + T LI L + G ++EA+ + M C P+ YN +
Sbjct: 324 MMDFMLE-----KGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTL 378
Query: 211 INALCR----------------------VGNFNK-------------ARFLLEQMELPGF 235
I LC+ V FN A L E+M+ G
Sbjct: 379 IGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKG- 437
Query: 236 RCPPDVYTYTILISSYC 252
C PD +TY+ILI S C
Sbjct: 438 -CDPDEFTYSILIESLC 453
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEA--LATFYRMKQF 198
F + ++K D ++ M+ G ++VT T LI L + G V+ A L +MK
Sbjct: 557 FCQQGDIKRAADIVQNMTLNGCEPDIVTYGT---LIGGLCKAGRVDVASKLLRSVQMKGM 613
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P AYN VI ALC+ +A L +M G PPDV TY I+ C G
Sbjct: 614 VLTPQ--AYNPVIQALCKRKRTKEAMRLFREMMEKGD--PPDVITYKIVFRGLCNGG 666
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQ 229
T T L++ EE V AL M + C + NV++N LC+ G +A RF+ E+
Sbjct: 236 TFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYEE 295
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
GF C PD T+ L++ C+ G
Sbjct: 296 ---EGF-C-PDQVTFNALVNGLCRTG 316
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
PDV +N++I ALC+ A +LE M P + PD T+T L+ +
Sbjct: 197 PDVSTFNILIRALCKAHQLRPAILMLEDM--PNYGLRPDEKTFTTLMQGF 244
>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V R + +K M G G V T TV LI L G +++A+ F +MK
Sbjct: 273 VLGRAGRIDEACRIMKRMEDDGCGPDVVTYTV--LIDALCTAGKLDDAMELFVKMKASSH 330
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD Y +++ G+ + + +ME G+ PDV T+TIL+++ CK G
Sbjct: 331 KPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGY--APDVITFTILVNALCKAG 383
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L + G + EA F M + CRP+ YN++IN + G+ N A L ++M G
Sbjct: 901 LLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREG 960
Query: 235 FRCPPDVYTYTILISSYCKYG 255
R PD+ +YT L+ C+ G
Sbjct: 961 IR--PDLKSYTSLVGCLCEAG 979
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTS--TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
EM RR E + S T + L+ G+ + M+ +P++Y Y + I L
Sbjct: 215 EMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVL 274
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R G ++A ++++ME G C PDV TYT+LI + C G
Sbjct: 275 GRAGRIDEACRIMKRMEDDG--CGPDVVTYTVLIDALCTAG 313
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+ VT M +++ V + L +MS N + LI L + G V+EA
Sbjct: 508 DSVTYNMMMKCYSKAGQVDEAIELLSDMSE--NQCEPDIIVINSLINTLYKAGRVDEAWK 565
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F R+K + P V YN +I L + G +A L M G CPP+ T+ ++
Sbjct: 566 MFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASM--TGNGCPPNTITFNTILDC 623
Query: 251 YCK 253
CK
Sbjct: 624 LCK 626
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + +V + K M R G + T L+ L E G V++AL F ++KQ
Sbjct: 940 FGKTGDVNTACELFKRMVREGIRP--DLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLY 997
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
D AYN++I+ L R +A L ++M+ G PD++TY LI + GM
Sbjct: 998 LDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGIN--PDLFTYNSLILNLGVAGM 1050
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ NG + T ++K + G V+EA+ M + +C PD+ N +IN L + G
Sbjct: 501 KSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRV 560
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++A + L + P V TY LI+ K G
Sbjct: 561 DEAWKMF--CRLKDMKLAPTVVTYNTLIAGLGKEG 593
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LI LG+EG V A+ F M C P+ +N +++ LC+ + A +L
Sbjct: 578 TVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKML 637
Query: 228 EQMELPGFRCPPDVYTYTILI 248
+M C PDV T+ +I
Sbjct: 638 YKM--TTMNCMPDVLTFNTII 656
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T I G+ G ++AL TF +MK P++ A N + +L +G +A
Sbjct: 434 GVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREA 493
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ + +++ G PD TY +++ Y K G
Sbjct: 494 KVIFNRLKSNGL--APDSVTYNMMMKCYSKAG 523
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I LG + EAL + M+ PD++ YN +I L G +A L E+++ G
Sbjct: 1006 MIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIG 1065
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+V+TY LI Y G
Sbjct: 1066 LE--PNVFTYNALIRGYSMSG 1084
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 183 GLVNEALA--TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
G+ N+ +A F MK C PDV+ YN++++A + G N+ L EQM C P+
Sbjct: 802 GVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSS--CKPN 859
Query: 241 VYTYTILISSYCK 253
T+ I+I++ K
Sbjct: 860 TITHNIIIANLVK 872
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI +L + GL EAL + RM +P + ++ ++ A + + + LLE+ME G
Sbjct: 200 LIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLG 259
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ P++YTYTI I + G
Sbjct: 260 LK--PNIYTYTICIRVLGRAG 278
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
S GNG T T ++ L + V+ AL Y+M C PDV +N +I+ L
Sbjct: 604 SMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEK 663
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ A +L QM+ PD T L+ K G+
Sbjct: 664 RVSDAIWLFHQMKK---MLTPDCVTLCTLLPGVVKNGL 698
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G+ G VN A F RM + RPD+ +Y ++ LC G + A E+++ G
Sbjct: 936 LINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTG 995
Query: 235 FRCPPDVYTYTILISS 250
D Y ++I
Sbjct: 996 LYL--DSIAYNLMIDG 1009
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 20/146 (13%)
Query: 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTT 169
LG+ E Y+++ F HN+ EM W+ EM G V T
Sbjct: 784 LGVKPTLESYNFLIEGFLGVHND----EMA------------WNLFTEMKNAGCAPDVFT 827
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+ L+ G+ G +NE + +M C+P+ +N++I L + + +KA L
Sbjct: 828 YNL--LLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYD 885
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
+ F P TY L+ K G
Sbjct: 886 LVSGDF--SPTPCTYGPLLDGLLKSG 909
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L E G + EA F R+K PD YN+++ + G ++A LL M +C
Sbjct: 484 LAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSEN--QCE 541
Query: 239 PDVYTYTILISSYCKYG 255
PD+ LI++ K G
Sbjct: 542 PDIIVINSLINTLYKAG 558
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R + ++ EM RG N +L T ++ LI LG G+V +A + ++
Sbjct: 1010 LGRSHRIEEALTLYDEMQSRGINPDLFTYNS---LILNLGVAGMVEQAGKLYEELQFIGL 1066
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
P+V+ YN +I GN + A + ++M + G C P+ T+ L
Sbjct: 1067 EPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGG--CSPNTGTFAQL 1111
>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
nagariensis]
gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
nagariensis]
Length = 961
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + V+ + ++M RRG V T + LI + G AL F +M + C
Sbjct: 425 AYGKKGQVEKALEIFRDMIRRGCERNVIT--YSSLISACEKAGRWEMALELFSKMHKENC 482
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P+V +N +I A G++ KA L EQM+ G C PD TY LI++Y + G
Sbjct: 483 KPNVVTFNSLIAACSHGGHWEKASELFEQMQTQG--CKPDSITYCGLITAYERGG 535
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 150 GLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G W+ E+ + + E + VT LI G +A F +M+ C+PD Y
Sbjct: 465 GRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITY 524
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+I A R G + +A EQM+ G C PD + L+ + G+
Sbjct: 525 CGLITAYERGGQWRRALKAFEQMQTQG--CHPDAAVFNSLMEVLWQSGV 571
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V + N + D K+M G + T + LI V + EA+ +++
Sbjct: 320 VCIKANELDLAQDVYKQMLEEGCSPNLVTYNI--LIDVYVKRCQWEEAVKVLDTLEKQAI 377
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +V YN VI+A + G +A + E+M G + P TYT LIS+Y K G
Sbjct: 378 QAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVK--PSATTYTALISAYGKKG 430
>gi|302761606|ref|XP_002964225.1| hypothetical protein SELMODRAFT_81759 [Selaginella moellendorffii]
gi|300167954|gb|EFJ34558.1| hypothetical protein SELMODRAFT_81759 [Selaginella moellendorffii]
Length = 580
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 9/148 (6%)
Query: 109 TLGINKATEFYHWVE-RFFHFFHN--EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE 165
L ++KA F W+ + + E C G+ +G+ + + M RGN
Sbjct: 149 ALAVDKAVRFLKWMSSKGLQVAMSTFEYNCLIEGL--CKGDRIDEALRLYELM--RGNNV 204
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
T +I+ + + G+V +A M++ C+PD + Y VIN C++GNF A
Sbjct: 205 PADIFTYNNMIECISKLGMVEQAEKVLKTMEESDCKPDKFIYTRVINGFCKLGNFKNAVV 264
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCK 253
LL +M+ G+ PD + +I CK
Sbjct: 265 LLGRMKEAGY--APDAVVFDCIIGGLCK 290
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186
+F ++ T + +F + V FLK MS +G ++T CLI+ L + ++
Sbjct: 131 NFTFSDSTADALVRIFCKALAVDKAVRFLKWMSSKGLQVAMSTFEYNCLIEGLCKGDRID 190
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
EAL + M+ D++ YN +I + ++G +A +L+ ME C PD + YT
Sbjct: 191 EALRLYELMRGNNVPADIFTYNNMIECISKLGMVEQAEKVLKTMEESD--CKPDKFIYTR 248
Query: 247 LISSYCKYG 255
+I+ +CK G
Sbjct: 249 VINGFCKLG 257
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C+PDV Y++VI+ALC +G ++ +++ ME G + PD YTI + ++C+
Sbjct: 371 CKPDVVMYSIVIDALCAMGMTDEGFVVVKAMEERGVK--PDAVVYTIFLYAFCR 422
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G+G + +I L G+ +E M++ +PD Y + + A CR +
Sbjct: 368 GDGCKPDVVMYSIVIDALCAMGMTDEGFVVVKAMEERGVKPDAVVYTIFLYAFCRSARLD 427
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
A LLE M G C PDV +Y L+ + C G +
Sbjct: 428 DACRLLEMMVEAG--CYPDVISYNTLLFALCSAGQE 461
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A M + C PDV +YN ++ ALC G +A L + M G P+V+TY
Sbjct: 426 LDDACRLLEMMVEAGCYPDVISYNTLLFALCSAGQEEEACRLFQVMVETGIE--PNVFTY 483
Query: 245 TILISSYC 252
T LI + C
Sbjct: 484 TQLIRALC 491
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME--- 231
++KV E G + + F ++ +C Y+ ++ LC+ G A LLE +
Sbjct: 300 VLKVSIEAGCEPDEVTYFKLAQERKCPATNLLYSRLMKCLCKTGKVEAACQLLEDLTNGS 359
Query: 232 ------LPGFRCPPDVYTYTILISSYCKYGM 256
L G C PDV Y+I+I + C GM
Sbjct: 360 RESEQLLGGDGCKPDVVMYSIVIDALCAMGM 390
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L G EA F M + P+V+ Y +I ALC AR L M+L
Sbjct: 451 LLFALCSAGQEEEACRLFQVMVETGIEPNVFTYTQLIRALCSTKKLEGARHLFNFMKLS- 509
Query: 235 FRCPPDVYTYTILI 248
+C PD+ TY LI
Sbjct: 510 -KCVPDMETYKALI 522
>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R +V + +EM R + LI L E G ++EA++ F RMK C
Sbjct: 237 YCRSKDVDSAFRVFEEMPNRNE------VSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCY 290
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+VY Y +I LCR N +KA LL++M PD+ TY LI+ C+ G
Sbjct: 291 PNVYTYTALIKGLCR-KNVHKAMGLLDEMLERNL--VPDLITYNSLIAGQCRAG 341
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ N V+ ++ G V +V LI + G V+EA F +M C
Sbjct: 372 LCKSNRVEEARRLFDSLTEEGVSANVIMYSV--LIDGYCKVGKVDEAGCLFEKMLSKNCS 429
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ Y +N +I+ LC GN +A L +QM G + P VYT+ ILI K G
Sbjct: 430 PNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLK--PTVYTFNILIGRMLKQG 481
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTS-TVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ + L M RG LV T C I L + V EA F + +
Sbjct: 338 CRAGHLDSAYRLLSLMKERG---LVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVS 394
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+V Y+V+I+ C+VG ++A L E+M C P+ YT+ LI C G
Sbjct: 395 ANVIMYSVLIDGYCKVGKVDEAGCLFEKM--LSKNCSPNAYTFNALIHGLCSAG 446
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L G + EAL+ F +M + +P VY +N++I + + G+F+ A L++M
Sbjct: 434 TFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKM 493
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + P TY I YC G
Sbjct: 494 MSSGEK--PVARTYNAFIEVYCSAG 516
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTC---LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
F+ ++ R+ + + +T ++ C L+ +L GLV+E + M + D+Y +N++
Sbjct: 139 FVSDICRKMSKDDITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLM 198
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
IN C++G +A+ + +M G PD +T T I YC+
Sbjct: 199 INVYCKMGFVKEAKQFMCKMIQAGLS--PDYFTSTSFILGYCR 239
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
N+K +M + G V T + LI + ++G ++A +M +
Sbjct: 442 LCSAGNLKEALSLFDQMVKMGLKPTVYTFNI--LIGRMLKQGDFDDAHKCLQKMMSSGEK 499
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P YN I C G +A ++ QM+ G PPD +TYT LI +Y K G+
Sbjct: 500 PVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGV--PPDDFTYTSLIKAYGKLGL 552
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F M++ C PD Y +I+ +C+V N A LL+QM+ G P + +IS
Sbjct: 624 FEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGIS--PSEMVFNAVISCC 681
Query: 252 CK 253
CK
Sbjct: 682 CK 683
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Query: 147 NVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
NV L EM R +L+T ++ LI G ++ A MK+ PD
Sbjct: 307 NVHKAMGLLDEMLERNLVPDLITYNS---LIAGQCRAGHLDSAYRLLSLMKERGLVPDQR 363
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y I+ LC+ +AR L + + G +V Y++LI YCK G
Sbjct: 364 TYGCFIDFLCKSNRVEEARRLFDSLTEEGVS--ANVIMYSVLIDGYCKVG 411
>gi|357509511|ref|XP_003625044.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500059|gb|AES81262.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 521
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 187 EALATFYR-MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
E + +FYR M++ R P+VY N+V++A C++G NKA +LE+M+ G C P+V T+
Sbjct: 202 ELVVSFYRQMRRNRISPNVYTINMVVSAYCKLGELNKASEVLEKMKDMGL-C-PNVVTFN 259
Query: 246 ILISSYCKYGM 256
LIS YC G+
Sbjct: 260 SLISGYCDKGL 270
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 150 GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
GL ++++ NG T LI +EG ++EA F MK P+V YN
Sbjct: 272 GLALKVRDLMMGKNGVFPNVVTFNTLINGFCKEGKLHEANRVFSEMKLANVAPNVVTYNT 331
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+IN + GN L E+ME + D+ TY LI CK G
Sbjct: 332 LINGFGQAGNSEMGIGLFEEMERN--KVKADILTYNGLILGLCKEG 375
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI G+ G + F M++ + + D+ YN +I LC+ G KA ++++
Sbjct: 328 TYNTLINGFGQAGNSEMGIGLFEEMERNKVKADILTYNGLILGLCKEGKTKKAAYMVK-- 385
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
EL P+ T++ LI+ C
Sbjct: 386 ELDKGNLVPNASTFSALIAGQC 407
>gi|357123699|ref|XP_003563545.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Brachypodium distachyon]
Length = 492
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+AR ++ W L EM RRG + T+ + L+++ + G+ +A M++
Sbjct: 167 AYARAGRLEDSWWVLGEMKRRGIQ--LDTAGYSTLVRLYRDNGMWKKATDLIMEMQELGV 224
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
DV YN +I+ + G AR L E+M G + PD+ T+ LI +C+ G
Sbjct: 225 ELDVKIYNGLIDTFGKYGQLADARRLFEKMRAEGIK--PDIATWNALIRWHCRVG 277
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Query: 150 GLW----DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
G+W D + EM G + LI G+ G + +A F +M+ +PD+
Sbjct: 207 GMWKKATDLIMEMQELGVE--LDVKIYNGLIDTFGKYGQLADARRLFEKMRAEGIKPDIA 264
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+N +I CRVGN +A M+ G P ++ I
Sbjct: 265 TWNALIRWHCRVGNMKRALRFFAAMQEEGMYPDPKIFMSII 305
>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 524
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + W+ L +M RG V T T + L + V++A+A ++K +
Sbjct: 355 LCKSERISHAWELLDQMHARGQPADVIT--YTSFLHALCKNHQVDKAVALVKKIKDQGIQ 412
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P++ YN++I+ LC+ G F A+ + + + + G++ V+TY I+I+ C G+
Sbjct: 413 PNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVT--VWTYNIMINGLCLEGL 465
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 160 RRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
R+ +G+LV T+ V + +I L +E LV EA + +M + PDV ++ +I C V
Sbjct: 177 RKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMV 236
Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
G F +A L +M L PDV T+ IL+ + CK G
Sbjct: 237 GQFKEAFGLFHEMVLTNIN--PDVCTFNILVDALCKEG 272
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T LI L +EG A F + + V+ YN++IN LC G F++A LLE+
Sbjct: 416 NTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEK 475
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
ME G C PDV TY +I + K
Sbjct: 476 MEDNG--CTPDVVTYETIIRALFK 497
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +IK L + +V+EAL+ F M+ PD Y+ +I+ LC+ + A LL+QM
Sbjct: 314 TIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHA 373
Query: 233 PGFRCPPDVYTYTILISSYCK 253
G P DV TYT + + CK
Sbjct: 374 RGQ--PADVITYTSFLHALCK 392
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L ++ E VN+A F + + R PDV++Y ++I LC++ ++A L
Sbjct: 274 TKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLF 333
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
+M G PD TY+ LI CK
Sbjct: 334 NEMRCKGI--TPDKVTYSSLIDGLCK 357
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME----------- 231
G EA F+ M PDV +N++++ALC+ G+ + + +L M
Sbjct: 237 GQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKH 296
Query: 232 ----LPGFRCPPDVYTYTILISSYCKYGM 256
+ R PDV++YTI+I CK M
Sbjct: 297 VFNIIGKRRVTPDVHSYTIIIKRLCKIKM 325
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G VT T +I L EGL +EA+ +M+ C PDV Y +I AL + +KA
Sbjct: 445 GYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVTYETIIRALFKNDENHKA 504
Query: 224 RFLLEQMELPGF 235
LL +M G
Sbjct: 505 EKLLREMIARGL 516
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T+T LIK L G V+EAL + R + +Y ++IN LC++G A +L
Sbjct: 118 TITLTTLIKGLCLNGKVHEALHFHDHVIARGFRLNEVSYGILINGLCKMGETRAALQVLR 177
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQT 258
+++ G +V Y+ +I S CK + T
Sbjct: 178 KID--GKLVNTNVVMYSTIIDSLCKEKLVT 205
>gi|341605775|gb|AEK82990.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605807|gb|AEK83006.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALXKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMXLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM +G V + +I L +EG +NE A F M + +P+V Y V+I+
Sbjct: 6 QEMDEKGI--QVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 63
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G+ A LL +M GF+ PDV TY+++++ CK G
Sbjct: 64 KSGSVEDAIRLLHRMIDEGFK--PDVVTYSVVVNGLCKNG 101
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALXKHG 171
>gi|297847648|ref|XP_002891705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337547|gb|EFH67964.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 823
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++KA E Y +V + + + C + + + ++ EM RG V +
Sbjct: 150 LSKAVEIYDYVVELYDSVPDVIACNALLSLVVKSRRLEDARKVYDEMCERGG--CVDNYS 207
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
++K + EG V E C P++ YN +I C++G+ A+ + ++++
Sbjct: 208 TCIMVKGMCSEGKVEEGRKLIEDRWGKGCVPNIVFYNTIIGGYCKLGDIENAKLVFKELK 267
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
L GF P + T+ +I+ +CK G
Sbjct: 268 LKGFM--PTLETFGTMINGFCKKG 289
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK G+++EALA RM + PD + Y+ +I+ + + A + ME
Sbjct: 526 MIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRDMEKN- 584
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+C P+V TYT LI+ +C G
Sbjct: 585 -KCKPNVVTYTSLINGFCCQG 604
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ F M++ +C+P+V Y +IN C G+F+ A ++M+ P+V TYT L
Sbjct: 574 AIKIFRDMEKNKCKPNVVTYTSLINGFCCQGDFSLAEETFKEMQSRDL--VPNVVTYTTL 631
Query: 248 ISSYCK 253
I S+ K
Sbjct: 632 IRSFAK 637
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L +++ RG + T + LI L G +++A+ ++ PD YN++++
Sbjct: 402 LLLQLAERGCKPDIVTYGI--LIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSG 459
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G F A+ L +M PD Y Y LI + + G
Sbjct: 460 LCKTGRFLPAKLLFSEMLDRSIL--PDAYVYATLIDGFIRSG 499
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C+PD+ YN++IN LC+ G A LL++ G +Y LI +YCK
Sbjct: 341 CKPDIATYNILINRLCKEGKKEVAAGLLDEASKKGLILTN--LSYAPLIQAYCK 392
>gi|341605711|gb|AEK82958.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605785|gb|AEK82995.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605787|gb|AEK82996.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605789|gb|AEK82997.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605793|gb|AEK82999.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605795|gb|AEK83000.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 82
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 83 FK--PDVVTYSVVVNGLCKNG 101
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 18 HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLIDGYAKSG 66
>gi|224576615|gb|ACN56981.1| At1g03560-like protein [Capsella rubella]
gi|224576617|gb|ACN56982.1| At1g03560-like protein [Capsella rubella]
gi|224576619|gb|ACN56983.1| At1g03560-like protein [Capsella rubella]
gi|224576621|gb|ACN56984.1| At1g03560-like protein [Capsella rubella]
gi|224576623|gb|ACN56985.1| At1g03560-like protein [Capsella rubella]
gi|224576627|gb|ACN56987.1| At1g03560-like protein [Capsella rubella]
gi|224576629|gb|ACN56988.1| At1g03560-like protein [Capsella rubella]
gi|224576635|gb|ACN56991.1| At1g03560-like protein [Capsella rubella]
gi|224576637|gb|ACN56992.1| At1g03560-like protein [Capsella rubella]
gi|224576647|gb|ACN56997.1| At1g03560-like protein [Capsella grandiflora]
Length = 196
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 84 RFNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 143
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++A L ++ME C VYTYTILIS K
Sbjct: 144 DEAMTLFKRMEEEE-GCDQTVYTYTILISGMFK 175
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +NE A F M + +P+V Y V+I+ + G+ A LL +M GF+ PDV
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK--PDVV 58
Query: 243 TYTILISSYCKYG 255
TY+++++ CK G
Sbjct: 59 TYSVVVNGLCKNG 71
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 39/133 (29%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC-- 215
M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+N LC
Sbjct: 13 MIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKN 70
Query: 216 ---------------------------------RVGNFNKARFLLEQMELPGFRCPPDVY 242
+ G ++A L E+M G C D Y
Sbjct: 71 GRVEEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG--CTRDSY 128
Query: 243 TYTILISSYCKYG 255
Y LI + K+G
Sbjct: 129 CYNALIDALTKHG 141
>gi|224102411|ref|XP_002312667.1| predicted protein [Populus trichocarpa]
gi|222852487|gb|EEE90034.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 13/161 (8%)
Query: 103 RNPQKVTL-----GINKATEFYHWVERFFHFFHNEV-----TCKEMGIVFARGNNVKGLW 152
R P VT G+ K +F V+ + + + C + + G V +
Sbjct: 145 REPDVVTFTIIIDGLCKMKKFDAAVQFWLNMLDKGIRPDNKACVALAVGLCDGGQVDLAY 204
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ + + G E V+T LI G +++ALA M + C+PD+ YNV++N
Sbjct: 205 ELIIGVISGGLSE-VSTLVYNALISGFCRAGRIDKALAMVSFMSRTGCKPDLVTYNVLLN 263
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C F +A LL++ME PDVY+Y L+ ++CK
Sbjct: 264 YCCNEFMFEEAVKLLKKMECSAIE--PDVYSYNQLLKAHCK 302
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F +N + + +EM R+G V T T+ LIK EG + A M
Sbjct: 335 FCSISNNRRAYKLFEEMGRKGIAPDVVTFTI--LIKAFLREGNSDMAKKLLDLMAGMGLL 392
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y +I+ C+ G A + M G PDV +Y LI+ +CK
Sbjct: 393 PDRIFYTTIIDHHCKSGKVEMAHSIFCDMVEKGI--TPDVVSYNALINGFCK 442
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
DV +YN +I A C + N +A L E+M G PDV T+TILI ++ + G
Sbjct: 324 DVVSYNTIIKAFCSISNNRRAYKLFEEMGRKGI--APDVVTFTILIKAFLREG 374
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R + + MSR G + T V L+ E + EA+ +M+
Sbjct: 230 FCRAGRIDKALAMVSFMSRTGCKPDLVTYNV--LLNYCCNEFMFEEAVKLLKKMECSAIE 287
Query: 202 PDVYAYNVVINALCRVGNFNKAR-FLLEQMELPGFRCPPDVYTYTILISSYC 252
PDVY+YN ++ A C+ + +KA F++ +M GF DV +Y +I ++C
Sbjct: 288 PDVYSYNQLLKAHCKANHPDKAYLFMVTKMVPKGF---CDVVSYNTIIKAFC 336
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A F M + PDV + ++I A R GN + A+ LL+ M G PD YT +
Sbjct: 344 AYKLFEEMGRKGIAPDVVTFTILIKAFLREGNSDMAKKLLDLM--AGMGLLPDRIFYTTI 401
Query: 248 ISSYCKYG 255
I +CK G
Sbjct: 402 IDHHCKSG 409
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
M++ C PD++A+N+ +N L R A + +M G PDV T+TI+I CK
Sbjct: 105 MEKLHCVPDIWAFNIYLNLLFRENREESALEVFGRMVERGRE--PDVVTFTIIIDGLCK 161
>gi|341605727|gb|AEK82966.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605729|gb|AEK82967.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIBEG 82
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 83 FK--PDVVTYSVVVNGLCKNG 101
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIBEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 18 HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLIDGYAKSG 66
>gi|341605781|gb|AEK82993.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605783|gb|AEK82994.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIXLLHRMIDEG 82
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 83 FK--PDVVTYSVVVNGLCKNG 101
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIXLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+A + M + + + +++VI LC+ G N+ + E M G + P+V YT+LI
Sbjct: 2 VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLI 59
Query: 249 SSYCKYG 255
Y K G
Sbjct: 60 DGYAKSG 66
>gi|341605725|gb|AEK82965.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL M G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHXMIDEG 82
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 83 FK--PDVVTYSVVVNGLCKNG 101
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ + M +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHXMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+A + M + + + +++VI LC+ G N+ + E M G + P+V YT+LI
Sbjct: 2 VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLI 59
Query: 249 SSYCKYG 255
Y K G
Sbjct: 60 DGYAKSG 66
>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 532
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI+ L G V + F M+ F C PDV YN +I+ LC+ ++A LL+
Sbjct: 198 TWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLK 257
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+++ C PDV TYT +IS + K G
Sbjct: 258 EVQSRN-DCSPDVMTYTSIISGFRKLG 283
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 150 GLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G +D K++ GE S+ L+ L + G V+EA+ F F P+ + +
Sbjct: 142 GKFDLAKKLIIEVQGEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTF 201
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N++I LCRVG K L M+ F C PDV TY LIS CK
Sbjct: 202 NILIRGLCRVGEVEKGFELFNAMQ--SFGCLPDVVTYNTLISGLCK 245
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ N + D LKE+ R + T T +I + G + A F M +
Sbjct: 243 LCKANELDRACDLLKEVQSRNDCS-PDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIE 301
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P V +NV+I+ ++GN A + E+M + C PDV T+T LI YC+ G
Sbjct: 302 PTVVTFNVLIDGFGKIGNMVAAEAMHEKM--ASYSCIPDVVTFTSLIDGYCRTG 353
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+WD +K + N T + +I L ++ ++EA ++K P + YN V
Sbjct: 361 VWDVMKARNVSPN-----IYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPV 415
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I+ C+ GN ++A ++ +ME RC PD T+TILI +C G
Sbjct: 416 IDGFCKAGNVDEANVIVTEMEEK--RCRPDKVTFTILIIGHCMKG 458
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+EM R G V T V LI G+ G + A A +M + C PDV + +I+
Sbjct: 291 LFEEMIRSGIEPTVVTFNV--LIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDG 348
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
CR G+ + + M+ P++YTY+++I++ CK
Sbjct: 349 YCRTGDIRLGLKVWDVMK--ARNVSPNIYTYSVIINALCK 386
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 150 GLWDFLKEM--SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
GL D ++ + R +G L+ + + L+ + G + A ++ R + Y
Sbjct: 107 GLHDLVEMVIGYMRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIEVQGEEARISSFVY 166
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N ++N L + G ++A FL + E F PP+ +T+ ILI C+ G
Sbjct: 167 NYLLNELVKGGKVHEAIFLFK--ENLAFHSPPNTWTFNILIRGLCRVG 212
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G V+EA M++ RCRPD + ++I C G +A + ++M G C PD
Sbjct: 423 GNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKMLAIG--CAPDNI 480
Query: 243 TYTILISSYCKYG 255
T + L++ K G
Sbjct: 481 TISSLVACLLKAG 493
>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63130, mitochondrial; Flags: Precursor
gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G L T + L+ L G V AL F +++ + PD+Y YN++I +C+ G
Sbjct: 460 DGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVED 519
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
L + L G + P+V TYT ++S +C+ G++
Sbjct: 520 GWDLFCSLSLKGVK--PNVVTYTTMMSGFCRKGLK 552
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
+LVT V + L + G ++ AL+ +M+Q + P V YN +I+ALC N N A
Sbjct: 220 DLVTYGIV---VNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDAL 276
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L +M+ G R P+V TY LI C YG
Sbjct: 277 NLFTEMDNKGIR--PNVVTYNSLIRCLCNYG 305
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 129 FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNE 187
F N VT + F + V + +EMS+RG LV T T T LI + +
Sbjct: 393 FPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRG---LVGNTVTYTTLIHGFFQARECDN 449
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A F +M PD+ Y+++++ LC G A + E ++ + PD+YTY I+
Sbjct: 450 AQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRS--KMEPDIYTYNIM 507
Query: 248 ISSYCKYG 255
I CK G
Sbjct: 508 IEGMCKAG 515
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F GN + + +M G + T LI L +EA+A RM C+
Sbjct: 161 FCHGNRISDAVSLVGQMVEMGYQP--DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQ 218
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
PD+ Y +V+N LC+ G+ + A LL++ME + P V Y +I + C Y
Sbjct: 219 PDLVTYGIVVNGLCKRGDIDLALSLLKKMEQG--KIEPGVVIYNTIIDALCNY 269
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI +EG + EA + M + PD++ Y+ +IN C ++A+ + E M
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 387
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C P+V TY LI +CK
Sbjct: 388 --ISKDCFPNVVTYNTLIKGFCK 408
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
VN+AL F M RP+V YN +I LC G ++ A LL M + P+V T+
Sbjct: 272 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM--IERKINPNVVTF 329
Query: 245 TILISSYCKYG 255
+ LI ++ K G
Sbjct: 330 SALIDAFVKEG 340
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A++ +M + +PD + +N +I+ L R ++A L+++M + G C PD+ TY
Sbjct: 167 ISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKG--CQPDLVTY 224
Query: 245 TILISSYCKYG 255
I+++ CK G
Sbjct: 225 GIVVNGLCKRG 235
>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
Length = 650
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
GN ++ D ++++ +G V T + LI L + G + AL F MK C PD
Sbjct: 277 GNRLEEALDLARQVTVKGVSPDVYTFNI--LINALCKVGDPHLALRLFEEMKNSGCTPDE 334
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN +I+ LC +G KA LL+ ME G CP TY +I CK
Sbjct: 335 VTYNTLIDNLCSLGKLGKALDLLKDMESTG--CPRSTITYNTIIDGLCK 381
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L +M RG L +T LI L + EAL ++ PDVY +N++INA
Sbjct: 251 ILNQMVDRGC--LPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 308
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+VG+ + A L E+M+ G C PD TY LI + C G
Sbjct: 309 LCKVGDPHLALRLFEEMKNSG--CTPDEVTYNTLIDNLCSLG 348
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V AL M Q PDV+ YN+V+N LC+ G +A+ +L QM G C PD+ T+
Sbjct: 210 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRG--CLPDITTF 267
Query: 245 TILISSYC 252
LI++ C
Sbjct: 268 NTLIAALC 275
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
V CL K G + EA +M C PD+ +N +I ALC +A L Q+
Sbjct: 236 VNCLCK----NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 291
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
+ G PDVYT+ ILI++ CK G
Sbjct: 292 VKGV--SPDVYTFNILINALCKVG 313
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R + V+ L+EMS RG +T T L++ EEG + AL RM + C
Sbjct: 99 LCRAHQVRTAVLMLEEMSSRGVAP--DETTFTTLMQGFVEEGSIEAALRVKARMLEMGCS 156
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
NV+IN C++G A ++Q GF PD TY ++ C+
Sbjct: 157 ATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFE--PDQITYNTFVNGLCQ 206
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N +T + + + ++K D L+ M+ NG V T LI L + G AL
Sbjct: 438 NNITYNSILTHYCKQGDIKKAADILETMT--ANGFEVDVVTYGTLINGLCKAGRTQVALK 495
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M+ RP AYN V+ +L R N A L +M G PPD TY I+
Sbjct: 496 VLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGE--PPDALTYKIVFRG 553
Query: 251 YCKYG 255
C+ G
Sbjct: 554 LCRGG 558
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L ++ +++A +M +P+ YN ++ C+ G+ KA +LE M
Sbjct: 406 TFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM 465
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF DV TY LI+ CK G
Sbjct: 466 TANGFEV--DVVTYGTLINGLCKAG 488
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ VL E + + + M +PDV +N ++ ALCR A +LE+M G
Sbjct: 60 LLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRG 119
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD T+T L+ + + G
Sbjct: 120 V--APDETTFTTLMQGFVEEG 138
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L G + +AL M+ C YN +I+ LC+ +A + +QM
Sbjct: 336 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 395
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+L G + T+ LI CK
Sbjct: 396 DLQGI--SRNAITFNTLIDGLCK 416
>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
Length = 381
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEA 188
NE T + +R ++ + +L++MS+ G T + VT +I + E+G V+ A
Sbjct: 85 NEATVNVIVNTLSRKGLLQKVTRYLEKMSKHG----CTANVVTYNAVISGMCEQGHVDSA 140
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
L M+ F C+PD+ YN ++ LC + A L+ +++ C PD T+ +I
Sbjct: 141 LELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELM--IKMSQNDCLPDNVTFNTII 198
Query: 249 SSYCKYGM 256
S C+ G+
Sbjct: 199 SFLCQKGL 206
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
M+ C P+V YNV+I+A+CR G+ ++AR LL LP C P+ Y ++ C
Sbjct: 7 MRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNS--LPSRGCKPNTVNYNTVLKGLC 62
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I + EG V++A + C+P+ YN V+ LC + + A LL++M
Sbjct: 18 TYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGLCSIERWVDAEELLDEM 77
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
CPP+ T +++++ + G+
Sbjct: 78 VRE--NCPPNEATVNVIVNTLSRKGL 101
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
A+ ++ + L EM+ +G T L + L +E + E + ++++
Sbjct: 236 LAKAGKMEQALELLNEMASKGYN---TDKMYQLLTESLNKEDKIEEVVQVVHKLQDSGIS 292
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
P +N V+ LCR G + A +L M + C PD TY ILI
Sbjct: 293 PQTVLFNTVLLVLCRNGKTDYAIDVLADM--VSYGCMPDELTYIILI 337
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 148 VKGL-----WDFLKEM--SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+KGL W+ +E+ N L T +I L ++GL+ +A F +M + C
Sbjct: 163 LKGLCSADQWEDAEELMIKMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGC 222
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
P+ Y+ +I L + G +A LL +M G+
Sbjct: 223 NPNSTTYSTIIGGLAKAGKMEQALELLNEMASKGY 257
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+A M + C P+ NV++N L R G K LE+M G C +V TY
Sbjct: 69 DAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHG--CTANVVTYNA 126
Query: 247 LISSYCKYG 255
+IS C+ G
Sbjct: 127 VISGMCEQG 135
>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 68/172 (39%), Gaps = 41/172 (23%)
Query: 122 VERFFHF------FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG--NGELV------ 167
+ER F F F NEVT + R +++GL + +M +G + EL
Sbjct: 221 LERAFDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIE 280
Query: 168 -------------------------TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
T+ ++ L + G V A F MK
Sbjct: 281 RLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNA 340
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
D YN++IN L R G + A LL +ME G C P++ TY LISSY K+
Sbjct: 341 DTVTYNILINGLGRAGKLDAAGALLLEMEENG--CAPNIITYNTLISSYGKW 390
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ LG G ++ + F M C+P+++ Y+ V++A G ++A + +QM
Sbjct: 137 TYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQM 196
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + PD TY ILI ++ K G
Sbjct: 197 VQKGLQ--PDAVTYNILIDAFGKTG 219
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATF 192
T M VF +G +V+ K+M + + V +T LI L + V EA F
Sbjct: 67 TYSSMIQVFMKGGDVQNGLLMYKQMLK---AKFVPDHTTFNILIDSLAKADQVEEACNVF 123
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
M + PDVY Y ++I +L +G + L E M G C P+++TY ++ ++
Sbjct: 124 GDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQG--CQPNLFTYHSVMHAFG 181
Query: 253 KYG 255
G
Sbjct: 182 SAG 184
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
++ V+ ++ ++M +G N + T T LI LG G ++ A A M++ C
Sbjct: 317 LSKAGRVEAAFELFQDMKFKGLNAD---TVTYNILINGLGRAGKLDAAGALLLEMEENGC 373
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++ YN +I++ + N + A L +M+ G P+V +Y+ LI + K G
Sbjct: 374 APNIITYNTLISSYGKWSNLSAATRLFLEMKERG--VAPNVVSYSSLIEGFGKAG 426
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + +N+ EM RG V + + LI+ G+ G + A++ F MK C
Sbjct: 387 YGKWSNLSAATRLFLEMKERGVAPNVVS--YSSLIEGFGKAGRTDAAISLFREMKAEGCP 444
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
P+ YN++I+ L R G F A L +M G C T ++L+
Sbjct: 445 PNHVTYNLLIDCLIRAGRFGAAMEYLREMRDAG--CQMGKVTKSLLV 489
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R + L EM NG T LI G+ ++ A F MK+
Sbjct: 352 LGRAGKLDAAGALLLEMEE--NGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVA 409
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V +Y+ +I + G + A L +M+ G CPP+ TY +LI + G
Sbjct: 410 PNVVSYSSLIEGFGKAGRTDAAISLFREMKAEG--CPPNHVTYNLLIDCLIRAG 461
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
+ T LI + GE ++ +AL T + RP Y Y+ +I + G+ +
Sbjct: 28 LDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSMIQVFMKGGDVQNGLLM 87
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCK 253
+QM F PD T+ ILI S K
Sbjct: 88 YKQMLKAKF--VPDHTTFNILIDSLAK 112
>gi|341605691|gb|AEK82948.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605825|gb|AEK83015.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMXLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM +G V + +I L +EG +NE A F M + +P+V Y V+I+
Sbjct: 6 QEMDEKGI--QVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 63
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G+ A LL +M GF+ PDV TY+++++ CK G
Sbjct: 64 KSGSVEDAIRLLHRMIDEGFK--PDVVTYSVVVNGLCKNG 101
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
Length = 1512
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 145 GNNVKGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
G + GLW FL M RG T T LI L +EG V EA M+
Sbjct: 1164 GLSRAGLWKEVTWFLNLMVDRGFSP--DAFTFTILIDGLCKEGKVGEAQQILELMRHKGK 1221
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD+ YN ++N LC VG A L E + G + +V++Y ILI+ YCK
Sbjct: 1222 EPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKL--NVFSYNILINGYCK 1272
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D EM G G L + L+ L G + EAL F M+ DVY YN +I+
Sbjct: 1106 DMFSEMI--GAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIH 1163
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L R G + + + L M GF PD +T+TILI CK G
Sbjct: 1164 GLSRAGLWKEVTWFLNLMVDRGF--SPDAFTFTILIDGLCKEG 1204
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G+ + ST L+ L + G + EA+ F +K+ +P++ ++++++ +CR G +A
Sbjct: 1325 GQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEA 1384
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+++ G PD Y ILI+ C GM
Sbjct: 1385 WKQFDEISKNGLE--PDTIAYNILINGLCNKGM 1415
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L ++G+ EAL F M PDV Y+ +++ LCR G +A ++M
Sbjct: 1087 TYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEM 1146
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
E G DVYTY LI + G+
Sbjct: 1147 EGRGI--SADVYTYNSLIHGLSRAGL 1170
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
TVT L+K + E + +A+ F M + D Y ++IN LC+ A L E+M
Sbjct: 1018 TVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKM 1077
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQT 258
+ C DV+TY ++I + CK GM T
Sbjct: 1078 K---GNCKGDVFTYGMIIDALCKDGMTT 1102
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 14/117 (11%)
Query: 148 VKGLW---------DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
VKG+W EM+++G L T LI L + A+ +MK
Sbjct: 1023 VKGVWMENGIPDAVQLFDEMTKKG--LLGDAKTYGILINGLCKARKTGLAIKLHEKMKG- 1079
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ DV+ Y ++I+ALC+ G +A + +M G PDV Y+ L+ C++G
Sbjct: 1080 NCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGIL--PDVVVYSSLMDGLCRFG 1134
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ W E+S+ NG T LI L +G+++EA+ ++M++ C
Sbjct: 1375 MCRAGKLEEAWKQFDEISK--NGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCL 1432
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
PD +NV+I L + ++A LLE+M F V + + ++S+
Sbjct: 1433 PDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLASF 1482
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + +A F + + +V++YN++IN C+ ++A E+M G + P
Sbjct: 1239 GQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLK--PSTV 1296
Query: 243 TYTILISSYCKYG 255
TY LI + C+ G
Sbjct: 1297 TYNTLIGALCQSG 1309
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA F M+ +P YN +I ALC+ G A+ L +M+ G + TY
Sbjct: 1276 IDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLK--LSTY 1333
Query: 245 TILISSYCKYG 255
+L+ CK G
Sbjct: 1334 CVLLDGLCKNG 1344
>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
Length = 588
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T LIK L E + EA F RM++ C P+V Y +I LC +GN N A
Sbjct: 156 GYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIA 215
Query: 224 ----RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +L F C P+V +Y+I+I CK G
Sbjct: 216 LKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVG 251
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQ------FRCRPDVYAYNVVINALCRVGNFNKAR 224
T LIK L G +N AL M F CRP+V +Y+++I+ LC+VGN+ +A
Sbjct: 198 TYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAI 257
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L +M G + P+V T+++LI CK G
Sbjct: 258 CLFNEMVDQGVQ--PNVVTFSVLIDMLCKEG 286
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
+ T CLI L + G + A F ++ + +PD AY+ +I+ C+ G +KA L
Sbjct: 445 LDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANIL 504
Query: 227 LEQMELPGFRCPPDVYTYTILISSY 251
++ME G C PD+ TY+IL+ +
Sbjct: 505 FQKMEENG--CSPDLITYSILMRGF 527
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 150 GLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
G W+ EM +G V T +V LI +L +EG V +A M Q P+++
Sbjct: 251 GNWEEAICLFNEMVDQGVQPNVVTFSV--LIDMLCKEGQVIKAKKLLEMMIQIGIVPNLF 308
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
Y +I C VG+ N A+ L M G+ PDV +Y +LI+ YCK
Sbjct: 309 TYTSLIKGFCLVGDLNSAKELFVSMPSKGYE--PDVISYNMLINGYCK 354
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ + +I L + G EA+ F M +P+V ++V+I+ LC+ G KA+ LLE M
Sbjct: 239 SYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMM 298
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P+++TYT LI +C G
Sbjct: 299 IQIGI--VPNLFTYTSLIKGFCLVG 321
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L + G + EA+ F ++ + + D+ + +I+ LC+ G A L E++ G +
Sbjct: 422 LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQ-- 479
Query: 239 PDVYTYTILISSYCKYG 255
PD Y+ +I +CK G
Sbjct: 480 PDAMAYSSMIHGFCKKG 496
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+ LI L +NE LA + + PDV + +I LC +A L +M
Sbjct: 128 TLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRM 187
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G C P+V TY LI C G
Sbjct: 188 QKLG--CTPNVVTYGTLIKGLCALG 210
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LIK G +N A F M PDV +YN++IN C+ +A L +M
Sbjct: 309 TYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEM 368
Query: 231 ELPGFRCPPDVYTYTILISS 250
G PDV T +L+ +
Sbjct: 369 LHVGMW--PDVKTSGVLLKA 386
>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05670, mitochondrial; Flags: Precursor
gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
Length = 741
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L +EG ++ A + M + +P+++ YN ++N LC+ GN +A L+ +
Sbjct: 458 TYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 517
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G D TYT L+ +YCK G
Sbjct: 518 EAAGLN--ADTVTYTTLMDAYCKSG 540
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EM R+G L T T LI + G + A FY M PDV Y +I+ C+
Sbjct: 341 EMIRQGI--LPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQ 398
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+G+ +A L +M G PD T+T LI+ YCK G
Sbjct: 399 IGDMVEAGKLFHEMFCKGLE--PDSVTFTELINGYCKAG 435
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+V +YN+VI+ +C++G +A LL MEL G+ PDV +Y+ +++ YC++G
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGY--TPDVISYSTVVNGYCRFG 295
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + +++ F EM R V T T +I + G + EA F+ M
Sbjct: 361 FCKRGDIRAASKFFYEMHSRDITPDVLT--YTAIISGFCQIGDMVEAGKLFHEMFCKGLE 418
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD + +IN C+ G+ A + M G C P+V TYT LI CK G
Sbjct: 419 PDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG--CSPNVVTYTTLIDGLCKEG 470
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRG--NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ R + +W ++ M R+G + S + L ++ + EA F M +
Sbjct: 291 YCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICK----LAEAEEAFSEMIRQG 346
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y +I+ C+ G+ A +M PDV TYT +IS +C+ G
Sbjct: 347 ILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDI--TPDVLTYTAIISGFCQIG 400
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I + + G + EA M+ PDV +Y+ V+N CR G +K L+E M+ G
Sbjct: 252 VIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG 311
Query: 235 FRCPPDVYTYTILISSYCK 253
+ P+ Y Y +I C+
Sbjct: 312 LK--PNSYIYGSIIGLLCR 328
>gi|356541258|ref|XP_003539096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g07740, mitochondrial-like [Glycine max]
Length = 256
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ LG+ G V EA A + MK+ +PD+ YN++IN LC+ G +A +L +M++ G
Sbjct: 112 LMNDLGKRGKVEEAKALLHEMKKRXLKPDIVTYNILINYLCKEGKAMEAYKVLLEMQIGG 171
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+ TY +++ C+ G
Sbjct: 172 --CVPNAATYRMVVDGLCQIG 190
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
+G +A F M Q R +P V +YN +I LCR + +KA LLE M R +
Sbjct: 14 KGEWGKACEVFDEMLQKRVQPSVVSYNSLIGFLCRKADLDKALALLEDMGQKXKR--ANE 71
Query: 242 YTYTILISSYC 252
TY +L+ C
Sbjct: 72 VTYALLMEGLC 82
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM +R + T + LI L +EG EA M+ C P+ Y +V++
Sbjct: 128 LLHEMKKRXLKPDIVTYNI--LINYLCKEGKAMEAYKVLLEMQIGGCVPNAATYRMVVDG 185
Query: 214 LCRVGNFNKARFLLEQM 230
LC++G+F +L M
Sbjct: 186 LCQIGDFEVGLSVLNAM 202
>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 582
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+ EM RG + T ++ L + V++A+A +K RPD+Y Y V+I
Sbjct: 407 LVDEMHDRGQPPNIIT--YNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKG 464
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC+ G A+ + E + + G+ DVYTYT++I +C G+
Sbjct: 465 LCQSGKLEDAQKVFEDLLVKGYNL--DVYTYTVMIQGFCVKGL 505
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI LG+ G ++ L M P++ YN +++ALC+ + +KA LL +
Sbjct: 387 TYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNL 446
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G R PD+YTYT+LI C+ G
Sbjct: 447 KDQGIR--PDMYTYTVLIKGLCQSG 469
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
++ +R +G+LV + V +I + + LVN+A + +M R PD + N +I
Sbjct: 196 QLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGF 255
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C +G +A LL +M L P +YT++IL+ ++CK G
Sbjct: 256 CIMGQLKEAVGLLHKMILENIN--PRMYTFSILVDAFCKEG 294
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D M+ RG + + T +I L + +V+EA+ F M+ + P+V YN +I+
Sbjct: 336 DIFDSMASRG--VIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLID 393
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
L ++G + L+++M G PP++ TY ++ + CK
Sbjct: 394 GLGKLGKISCVLKLVDEMHDRG--QPPNIITYNSILDALCK 432
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LIK L + G + +A F + DVY Y V+I C G F+ A LL +M
Sbjct: 457 TYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKM 516
Query: 231 ELPGFRCPPDVYTYTILISS 250
E G C P+ TY I+I S
Sbjct: 517 EDNG--CIPNAKTYEIVILS 534
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LIK L +G +++AL ++ D +Y +IN LC+VG A LL+++
Sbjct: 142 TFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRV 201
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ G P+ Y ++I + CK
Sbjct: 202 D--GKLVQPNAVMYNMIIDNMCK 222
>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
Length = 564
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G+ + L F EM+R G + T +I L + + + F + + PDV
Sbjct: 15 GDTARALEIFRGEMARDGVAPTIVTYNT--IINGLCKSNDLGAGMELFEELVERGHHPDV 72
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN +I++LC+ G+ +AR L M G C P+V TY++LI+ CK G
Sbjct: 73 VTYNTLIDSLCKAGDLEEARRLHGDMSSRG--CVPNVVTYSVLINGLCKVG 121
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ N++ + +E+ RG+ ++VT +T LI L + G + EA M C
Sbjct: 47 LCKSNDLGAGMELFEELVERGHHPDVVTYNT---LIDSLCKAGDLEEARRLHGDMSSRGC 103
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P+V Y+V+IN LC+VG ++AR L+++M P++ TY + CK M
Sbjct: 104 VPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSM 159
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L++ S R + + VT ST LI L + G ++EA + F M P+V YN ++N L
Sbjct: 170 LRDGSLRVSPDTVTFST---LIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGL 226
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C+ +A ++E M G PDV TY++L+ ++CK
Sbjct: 227 CKADKMERAHAMIESMVDKGV--TPDVITYSVLVDAFCK 263
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
F + + V + L M+ RG N + T LI + G +A A F M
Sbjct: 261 FCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAK 320
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PDV + +I+ LC+ G AR +L+ M G PP+V TY L+ CK G
Sbjct: 321 NLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGV--PPNVVTYNALVHGLCKSG 375
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G V A M P+V YN +++ LC+ G +A LE+M G
Sbjct: 332 LIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSG 391
Query: 235 FRCPPDVYTYTILISSYCK 253
C PD TY L+ + C+
Sbjct: 392 --CVPDSITYGSLVYALCR 408
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL+EM G + + T L+ L ++AL +K F PD YN++++
Sbjct: 383 FLEEMVSSGC--VPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDG 440
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L + G +A +LE+M G + PD +T+ S + G
Sbjct: 441 LWKSGKTEQAITVLEEMVGKGHQ--PDSFTFAACFSGLHRSG 480
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY-----TYTILISSYCKYG 255
PDV Y+V+++A C+ ++A LL M G C P+V T+ ILI+ CK G
Sbjct: 249 PDVITYSVLVDAFCKASRVDEALELLHGMASRG--CTPNVLVPDKVTFNILIAGACKAG 305
>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
Length = 440
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLG-----EEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
KEM +RG V + VT I V G +EG + EA+ F M + PDV Y+ +
Sbjct: 312 KEMLKRG----VKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSAL 367
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
I+ L + G + AR LL ME G C P+VYTY LIS C
Sbjct: 368 IDGLGKAGKLDDARRLLGAMEAKG--CIPNVYTYNSLISGLC 407
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T I L + G V +AL M + C PDV ++N VIN LC+ ++A LL M
Sbjct: 220 TYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGM 279
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G C P+ ++ LI C+ G
Sbjct: 280 EAKG--CSPNAISFNTLICGQCRAG 302
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L +E VNEA F + + PD Y V I+ LC+ G A +L+ M
Sbjct: 185 TYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDM 244
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ G C PDV ++ +I+ CK
Sbjct: 245 DEKG--CVPDVVSHNAVINGLCK 265
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L G +++A A + RM + PDV YN +++ C+VG ++A + +
Sbjct: 12 TYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGA 71
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
GF PDV TY LI+ +CK
Sbjct: 72 VKRGF--VPDVVTYNALINGFCK 92
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T + LI LG+ G +++A M+ C P+VY YN +I+ LC + ++A
Sbjct: 356 GRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEA 415
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISS 250
L M G C PD TY +IS+
Sbjct: 416 LELFVAMVEKG--CVPDTITYGTIISA 440
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA RM PDV YN ++N LC+ G ++AR L+ GF P+V TY
Sbjct: 96 LDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLIVD---KGF--SPNVITY 150
Query: 245 TILISSYCK 253
+ LIS C+
Sbjct: 151 STLISGLCR 159
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
LK+M +G V + +I L +E V+EA M+ C P+ ++N +I
Sbjct: 240 MLKDMDEKGCVPDVVSHNA--VINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICG 297
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
CR G + KA ++M G + P V TY IL+ CK
Sbjct: 298 QCRAGKWKKAMTTFKEMLKRGVK--PTVVTYNILVDGLCK 335
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++EAL F + PDV YN +IN C+ ++A+ +L++M PDV
Sbjct: 59 GELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENL--VPDVV 116
Query: 243 TYTILISSYCKYG 255
TY L++ CK G
Sbjct: 117 TYNSLVNGLCKNG 129
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+EAL F + + P+V YN++I+ L + N+A L + G PD TY
Sbjct: 164 VSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLE--PDAITY 221
Query: 245 TILISSYCKYG 255
T+ I CK G
Sbjct: 222 TVFIDGLCKAG 232
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRV---GNFNKARFLLEQMELPGFRCPPDVYT 243
+A+ TF M + +P V YN++++ LC+ G +A L + M G PDV T
Sbjct: 306 KAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGR--VPDVVT 363
Query: 244 YTILISSYCKYG 255
Y+ LI K G
Sbjct: 364 YSALIDGLGKAG 375
>gi|399107212|gb|AFP20370.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 116 RFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 175
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 176 DEAMALFKRMEEEE-GCDQTVYTYTILISG 204
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 25 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 84
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 85 FK--PDVVTYSVVVNGLCKNG 103
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 39 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 96
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 97 NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 154
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 155 CTRDSYCYNALIDALTKHG 173
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+A + M + + + +++VI LC+ G N+ + E M G + P+V YT+LI
Sbjct: 4 VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLI 61
Query: 249 SSYCKYG 255
Y K G
Sbjct: 62 DGYAKSG 68
>gi|357130244|ref|XP_003566760.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g40400-like [Brachypodium distachyon]
Length = 579
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T L+ L G +E A M + RP+ + +N+++ ALCR + +A+ LE
Sbjct: 179 TVAFNALLAALSRAGRFDELWAARAVMARAEVRPNTHTFNILVTALCRGEDAERAQGFLE 238
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
++E GF PDV TY L+S YC+ G
Sbjct: 239 ELEEQGFE--PDVVTYNTLLSGYCRRG 263
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
RG + + FL+E+ +G ++VT +T L+ G + +AL F M
Sbjct: 223 ALCRGEDAERAQGFLEELEEQGFEPDVVTYNT---LLSGYCRRGKLQDALHLFGVMPPRG 279
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
PD+ ++ V+++ LC+ G N AR + ++M G PD Y++LI+ YC
Sbjct: 280 VEPDLVSHTVLMDGLCKAGRLNDARRMFDRMVHSGVS--PDAIAYSVLIAGYC 330
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
C++M R + +GL+ ++ E +G + ++ L + V++AL
Sbjct: 400 CEDM-----RPHAARGLFKWMVE-----DGHSPSLEMYNMILDCLCQCDSVDDALDVKVE 449
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M RPD + Y ++ LCR+G + ++ +M G + P+ T L+ +CK
Sbjct: 450 MSSREVRPDFHTYQALVTCLCRLGKSLDGKSVMAEMIESGLQ--PNEAICTALVCGFCKE 507
Query: 255 G 255
G
Sbjct: 508 G 508
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G ++ + CLI L E+ + A F M + P + YN++++ LC+ +
Sbjct: 381 RKYGVVIPLESYNCLIGALCEDMRPHAARGLFKWMVEDGHSPSLEMYNMILDCLCQCDSV 440
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ A L ++E+ PD +TY L++ C+ G
Sbjct: 441 DDA--LDVKVEMSSREVRPDFHTYQALVTCLCRLG 473
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ L + G +N+A F RM PD AY+V+I C +AR LL ME+
Sbjct: 288 TVLMDGLCKAGRLNDARRMFDRMVHSGVSPDAIAYSVLIAGYCNEQRVREARLLL--MEM 345
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G + + +I S+ K G
Sbjct: 346 VGSGLSSEGFALRAVIESHVKVG 368
>gi|8920567|gb|AAF81289.1|AC027656_6 Contains similarity to a hypothetical protein F23N19.4 gi|6630464
from Arabidopsis thaliana BAC F23N19 gb|AC007190. It
contains a PPR repeat domain PF|01535 [Arabidopsis
thaliana]
Length = 797
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
GN GL LK+M RG EL + + ++ L + G ++EAL+ F +MK PD+
Sbjct: 354 GNIDMGLV-LLKDMLSRGF-ELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDL 411
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
AY++VI+ LC++G F+ A +L ++M R P+ T+ L+ C+ GM
Sbjct: 412 VAYSIVIHGLCKLGKFDMALWLYDEM--CDKRILPNSRTHGALLLGLCQKGM 461
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+GE + +I + G + EAL F + + P V +N +I C+ N +
Sbjct: 475 SGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAE 534
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
AR +L+ ++L G P V +YT L+ +Y G
Sbjct: 535 ARKILDVIKLYGL--APSVVSYTTLMDAYANCG 565
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G V+ A + F + + P VY++N++IN LC VG+ +A L M G PD
Sbjct: 249 GFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVE--PDSV 306
Query: 243 TYTILISSYCKYGM 256
TY IL + GM
Sbjct: 307 TYNILAKGFHLLGM 320
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L G + EAL M + PD YN++ +G + A ++ M G
Sbjct: 276 LINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKG 335
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PDV TYTIL+ C+ G
Sbjct: 336 L--SPDVITYTILLCGQCQLG 354
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD YN +I LCRV + + A LE M+ TY ILI S C YG
Sbjct: 631 PDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASS--ATYNILIDSLCVYG 682
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVT-TSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + V+ +EMS+RG LV+ T T LI+ + G V++A F +M F
Sbjct: 443 FCKAKRVEDGMKLFREMSQRG---LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI 499
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD++ YN+++ LC G KA + E M+ D+ TYT +I CK G
Sbjct: 500 SPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM--DLDIVTYTTVIRGMCKTG 552
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLV 185
H F + VT + F + V+ + +EMS+RG LV T T LI+ L + G
Sbjct: 1005 HCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRG---LVGNTVTYNILIQGLFQAGDC 1061
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+ A F M P++ YN +++ LC+ G KA + E ++ + P +YTY
Sbjct: 1062 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS--KMEPTIYTYN 1119
Query: 246 ILISSYCKYG 255
I+I CK G
Sbjct: 1120 IMIEGMCKAG 1129
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
+LVT V + L + G + A +M+Q + P V YN +I+ LC+ + + A
Sbjct: 834 DLVTYGVV---VNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDAL 890
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L ++ME G R P+V TY+ LIS C YG
Sbjct: 891 NLFKEMETKGIR--PNVVTYSSLISCLCNYG 919
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI L +EA+A RM C+PD+ Y VV+N LC+ G+ + A LL
Sbjct: 800 TVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLN 859
Query: 229 QMELPGFRCPPDVYTYTILISSYCKY 254
+ME + P V Y +I CKY
Sbjct: 860 KMEQG--KLEPGVLIYNTIIDGLCKY 883
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + G + +A+ F +++ + P +Y YN++I +C+ G L +
Sbjct: 1082 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL 1141
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L G + PDV Y +IS +C+ G
Sbjct: 1142 SLKGVK--PDVVAYNTMISGFCRKG 1164
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+ L+ V++A++ +M + +PD+ AYN +I++LC+ N A +++
Sbjct: 260 TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI 319
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
E G R P+V TYT L++ C
Sbjct: 320 ERKGIR--PNVVTYTALVNGLC 339
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + +V +F +M G + T + L+ L + G + +AL F M++
Sbjct: 478 FFQAGDVDKAQEFFSQMDFFGISPDIWTYNI--LLGGLCDNGELEKALVIFEDMQKREMD 535
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
D+ Y VI +C+ G +A L + L G + PD+ TYT ++S C G+
Sbjct: 536 LDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLK--PDIVTYTTMMSGLCTKGL 588
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI +EG + EA + M + P + Y+ +IN C ++A+ + E M
Sbjct: 942 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 1001
Query: 231 ELPGFRCPPDVYTYTILISSYCKY 254
C PDV TY LI +CKY
Sbjct: 1002 --VSKHCFPDVVTYNTLIKGFCKY 1023
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ + G V EA F M + PD+ Y+ +IN LC ++A + + M
Sbjct: 365 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 424
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C DV +Y LI+ +CK
Sbjct: 425 VSKG--CLADVVSYNTLINGFCK 445
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++AL F M+ RP+V Y+ +I+ LC G ++ A LL M + PDV+T+
Sbjct: 886 MDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM--IERKINPDVFTF 943
Query: 245 TILISSYCKYG 255
+ LI ++ K G
Sbjct: 944 SALIDAFVKEG 954
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 105 PQKVTLGI--------NKATEFYHWVERFFHFFHNEVTCKEMGIV--FARGNNVKGLWDF 154
P +VT+G N+ ++ V++ + I+ + V +DF
Sbjct: 256 PDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDF 315
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
KE+ R+G V T T L+ L ++A M + + P+V Y+ +++A
Sbjct: 316 FKEIERKGIRPNVVT--YTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF 373
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ G +A+ L E+M PD+ TY+ LI+ C
Sbjct: 374 VKNGKVLEAKELFEEM--VRMSIDPDIVTYSSLINGLC 409
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 20/119 (16%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CK+ + R + K +D+ +++SR G EL +++A+A F
Sbjct: 644 CKK-ALSLLRAFSGKTSYDYREKLSRNGLSELK-----------------LDDAVALFGE 685
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
M + R P + ++ +++A+ ++ F+ L EQM+ G P + YTY+ILI+ +C+
Sbjct: 686 MVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGI--PHNHYTYSILINCFCR 742
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 60/161 (37%), Gaps = 41/161 (25%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N +T + F + V + +EM R + ++VT S+ LI L ++EA
Sbjct: 362 NVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSS---LINGLCLHDRIDEAN 418
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCR--------------------------------- 216
F M C DV +YN +IN C+
Sbjct: 419 QMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 478
Query: 217 --VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
G+ +KA+ QM+ G PD++TY IL+ C G
Sbjct: 479 FQAGDVDKAQEFFSQMDFFGI--SPDIWTYNILLGGLCDNG 517
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L + VN+A F +++ RP+V Y ++N LC ++ A LL M
Sbjct: 299 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKK- 357
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ P+V TY+ L+ ++ K G
Sbjct: 358 -KITPNVITYSALLDAFVKNG 377
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T +I+ + + G V + F + +PDV AYN +I+ CR G+ +A L
Sbjct: 1114 TIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALF 1173
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++M+ G P+ Y LI + + G
Sbjct: 1174 KEMKEDG--TLPNSGCYNTLIRARLRDG 1199
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+N+A+ F M + R P + +N +++A+ ++ ++ L ++ME+ G R D+YT+
Sbjct: 169 LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIR--NDLYTF 226
Query: 245 TILISSYC 252
I+I+ +C
Sbjct: 227 NIVINCFC 234
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+A +M +P+ +N +I+ L ++A L+++M G C PD+ TY
Sbjct: 781 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG--CQPDLVTY 838
Query: 245 TILISSYCKYG 255
++++ CK G
Sbjct: 839 GVVVNGLCKRG 849
>gi|297849786|ref|XP_002892774.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338616|gb|EFH69033.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 883
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 146 NNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
N+VK + K+M RR E+V T T L+K E L E MK F +PDV
Sbjct: 712 NDVKKAYALFKDMKRR---EIVPDVVTYTVLLKNNPELDLTRE-------MKAFDVKPDV 761
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ Y V+I+ C++G+ +A+ + +QM G PD YT LI+ CK G
Sbjct: 762 FYYTVLIDWQCKIGDLKEAKGIFDQMIESGV--DPDAAPYTALIAGCCKMG 810
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 55/140 (39%), Gaps = 35/140 (25%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R N +K + ++M RR V T TV +L N L M+ F +
Sbjct: 645 YCRLNELKQAYALFQDMKRRDVKPDVVTYTV-----LLNS----NPELDVKREMEAFDVK 695
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQM--------------------------ELPGF 235
PDV Y ++IN C++ + KA L + M E+ F
Sbjct: 696 PDVVLYTIMINRYCQLNDVKKAYALFKDMKRREIVPDVVTYTVLLKNNPELDLTREMKAF 755
Query: 236 RCPPDVYTYTILISSYCKYG 255
PDV+ YT+LI CK G
Sbjct: 756 DVKPDVFYYTVLIDWQCKIG 775
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T + E+ +++A RM + P+ Y +I A CRV N KAR E L
Sbjct: 569 TLFTSLCAEKNHISKAQDLLDRMWELGVEPEKSMYGKLIGAWCRVNNVRKARQFFEI--L 626
Query: 233 PGFRCPPDVYTYTILISSYCK 253
PD++TYTI+I++YC+
Sbjct: 627 VTKEIIPDLFTYTIMINTYCR 647
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
PD++ Y ++IN CR+ +A L + M+ + PDV TYT+L++S
Sbjct: 633 PDLFTYTIMINTYCRLNELKQAYALFQDMKRRDVK--PDVVTYTVLLNS 679
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I + +A A F MK+ +PDV Y V++N+ N + +M
Sbjct: 637 TYTIMINTYCRLNELKQAYALFQDMKRRDVKPDVVTYTVLLNS-------NPELDVKREM 689
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E F PDV YTI+I+ YC+
Sbjct: 690 E--AFDVKPDVVLYTIMINRYCQ 710
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
LG+ G V EA+ F M PDV Y +I C G + A L+ +E+ G
Sbjct: 406 LGKLGKVEEAIELFREMTGKGIAPDVINYTTLIGGCCLQGKCSDAFDLM--IEMDGSGKT 463
Query: 239 PDVYTYTILISSYCKYGMQ 257
PD+ Y +L + G+
Sbjct: 464 PDIVIYNVLAGGLARNGLS 482
>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
Length = 625
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T+T T LI + G+ AL F+ M+ +C+P++ + ++NA R G KA +
Sbjct: 310 STATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIF 369
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
EQ++ G PDVY Y L+ +Y + G
Sbjct: 370 EQLQEAGLE--PDVYAYNALMEAYSRAG 395
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ EGL +A F ++++ PDVYAYN ++ A R G A + M
Sbjct: 348 TFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLM 407
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQ 257
+ G C PD +Y I++ +Y + G+
Sbjct: 408 QHMG--CEPDRASYNIMVDAYGRAGLH 432
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L+K GL+ +A A F M+++ P YN I+ L + G+ KA +
Sbjct: 240 TEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIF 299
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
E+M+ RC P TYT+LI+ Y K
Sbjct: 300 ERMKRD--RCQPSTATYTMLINLYGK 323
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G++ L +A +T+ + + RC P Y +++ A C G KA + +M G
Sbjct: 212 LIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYG 271
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F PP Y I K G
Sbjct: 272 F--PPSAVVYNAYIDGLMKGG 290
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-ELPG 234
I L + G +A+ F RMK+ RC+P Y ++IN G +K+ L+ E+
Sbjct: 283 IDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLY---GKASKSYMALKVFHEMRS 339
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
+C P++ T+T L++++ + G+
Sbjct: 340 QKCKPNICTFTALVNAFAREGL 361
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L++ G A F M+ C PD +YN++++A R G A+ + E M+ G
Sbjct: 387 LMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLG 446
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P + ++ +L+S+Y + G
Sbjct: 447 I--TPTMKSHMLLLSAYSRAG 465
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T + L+ G V + +M + +PD + N ++N R+G F K +L
Sbjct: 450 TMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVL 509
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
ME + P D+ TY ILI+ Y + G
Sbjct: 510 TAMEKGPY--PADISTYNILINIYGRAG 535
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PDV YN++I+A + + KA +EL RC P TY +L+ +YC G+
Sbjct: 204 PDVICYNLLIDAYGQKSLYKKAESTY--LELLEARCVPTEDTYALLLKAYCTSGL 256
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
++ ++ G GL +A A F MK+ P + ++ ++++A R G K ++ Q
Sbjct: 417 ASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQ 476
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M G + PD + +++ Y + G
Sbjct: 477 MHKSGIK--PDTFVLNSMLNLYGRLG 500
>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 38/141 (26%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W F+ M R VT T L++ GL EA+ F RM+ + C+PD A++++I
Sbjct: 114 WYFIDLMKARNVD--VTVETFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILI 171
Query: 212 NAL----------------------------------CRVGNFNKARFLLEQMELPGFRC 237
+ L CR GN ++A + +M++ G +
Sbjct: 172 SILCRERRASQAQEFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIK- 230
Query: 238 PPDVYTYTILISSYCKYGMQT 258
P+VYTY+I+I S C+ G T
Sbjct: 231 -PNVYTYSIVIDSLCRCGQIT 250
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L++ G ++EA F MK +P+VY Y++VI++LCR G +A + +M
Sbjct: 202 TNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDIFAEMLD 261
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C P+ TY L+ + K G
Sbjct: 262 AG--CQPNSITYNSLMRIHVKAG 282
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R N+ EM G V T ++ +I L G + A F M C+
Sbjct: 208 WCRAGNISEAERVFGEMKVAGIKPNVYTYSI--VIDSLCRCGQITRAHDIFAEMLDAGCQ 265
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+ YN ++ + G K + QM+ G C PD TY LI ++CK
Sbjct: 266 PNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLG--CEPDTVTYNFLIETHCK 315
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+++ + G + L + +MK+ C PD YN +I C+ N A ++ M
Sbjct: 270 TYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCKDENLEDAIKVIGLM 329
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P+ T+ L K G
Sbjct: 330 AKKG--CAPNASTFNTLFGCIAKLG 352
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ N++ + M+++G ST L + + G VN A + +MK+ C +
Sbjct: 315 KDENLEDAIKVIGLMAKKGCAP--NASTFNTLFGCIAKLGDVNAAHRMYKKMKELNCEAN 372
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN ++ V + + L + E+ + P+V TY +LI+ YC G
Sbjct: 373 TVTYNTLMKMF--VASKSTDMVLKLKTEMDENKIEPNVNTYKVLITMYCGMG 422
>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
alba]
Length = 413
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + G V+ A+ + +M PD+ YN +I LC+ G+ N+A L+++M
Sbjct: 231 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEM 290
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G + PD +TYT LI CK G
Sbjct: 291 SMKGLK--PDKFTYTTLIDGCCKEG 313
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N GL D EMS +G T T LI +EG ++ A RM Q R D
Sbjct: 281 NQAHGLID---EMSMKGLKP--DKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDV 335
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
AY +I+ LC+ G A +L +M G + PD TYT++I+ +CK G
Sbjct: 336 AYTAIISGLCQEGRPVDAEKMLREMLSVGLK--PDTGTYTMIINEFCKKG 383
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
++G + A + F + ++ RP V +YN ++N R+G+ ++ L M G + PD
Sbjct: 136 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQ--PD 193
Query: 241 VYTYTILISSYCK 253
VYTY++LI+ CK
Sbjct: 194 VYTYSVLINGLCK 206
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PDVY Y+V+IN LC+ + A L ++M + G P+ T+T LI +CK G
Sbjct: 191 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGL--VPNGVTFTTLIDGHCKNG 243
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L +EG +A M +PD Y ++IN C+ G+ K LL++M+
Sbjct: 338 TAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 397
Query: 233 PGFRCPPDVYTYTILISS 250
G P V TY +L++
Sbjct: 398 NGH--VPSVXTYNVLMNG 413
>gi|240254074|ref|NP_172820.4| PPR repeat-containing protein [Arabidopsis thaliana]
gi|332190928|gb|AEE29049.1| PPR repeat-containing protein [Arabidopsis thaliana]
Length = 806
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
GN GL LK+M RG EL + + ++ L + G ++EAL+ F +MK PD+
Sbjct: 341 GNIDMGLV-LLKDMLSRGF-ELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDL 398
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
AY++VI+ LC++G F+ A +L ++M R P+ T+ L+ C+ GM
Sbjct: 399 VAYSIVIHGLCKLGKFDMALWLYDEM--CDKRILPNSRTHGALLLGLCQKGM 448
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+GE + +I + G + EAL F + + P V +N +I C+ N +
Sbjct: 462 SGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAE 521
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
AR +L+ ++L G P V +YT L+ +Y G
Sbjct: 522 ARKILDVIKLYGL--APSVVSYTTLMDAYANCG 552
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G V+ A + F + + P VY++N++IN LC VG+ +A L M G PD
Sbjct: 236 GFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVE--PDSV 293
Query: 243 TYTILISSYCKYGM 256
TY IL + GM
Sbjct: 294 TYNILAKGFHLLGM 307
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L G + EAL M + PD YN++ +G + A ++ M G
Sbjct: 263 LINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKG 322
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PDV TYTIL+ C+ G
Sbjct: 323 L--SPDVITYTILLCGQCQLG 341
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD YN +I LCRV + + A LE M+ TY ILI S C YG
Sbjct: 618 PDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASS--ATYNILIDSLCVYG 669
>gi|15222950|ref|NP_172835.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174769|sp|Q9LMH5.1|PPR42_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g13800
gi|8778410|gb|AAF79418.1|AC068197_28 F16A14.3 [Arabidopsis thaliana]
gi|332190949|gb|AEE29070.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 883
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 13/111 (11%)
Query: 146 NNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
N++K ++ K+M RR E+V T T L+K E L E MK F +PDV
Sbjct: 712 NDLKKVYALFKDMKRR---EIVPDVVTYTVLLKNKPERNLSRE-------MKAFDVKPDV 761
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ Y V+I+ C++G+ +A+ + +QM G PD YT LI+ CK G
Sbjct: 762 FYYTVLIDWQCKIGDLGEAKRIFDQMIESG--VDPDAAPYTALIACCCKMG 810
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 11/142 (7%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++KA FY +E +E +G G D E R L +
Sbjct: 517 LDKAEAFYESLEH---------KSRENDASMVKGFCAAGCLDHAFERFIRLEFPLPKSVY 567
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
T + E+ +++A RM + P+ Y +I A CRV N KAR E
Sbjct: 568 FTLFTSLCAEKDYISKAQDLLDRMWKLGVEPEKSMYGKLIGAWCRVNNVRKAREFFEI-- 625
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
L + PD++TYTI+I++YC+
Sbjct: 626 LVTKKIVPDLFTYTIMINTYCR 647
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 52/140 (37%), Gaps = 35/140 (25%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R N K + ++M RR V T +V L+ E + E M+ F
Sbjct: 645 YCRLNEPKQAYALFEDMKRRDVKPDVVTYSV--LLNSDPELDMKRE-------MEAFDVI 695
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQM--------------------------ELPGF 235
PDV Y ++IN C + + K L + M E+ F
Sbjct: 696 PDVVYYTIMINRYCHLNDLKKVYALFKDMKRREIVPDVVTYTVLLKNKPERNLSREMKAF 755
Query: 236 RCPPDVYTYTILISSYCKYG 255
PDV+ YT+LI CK G
Sbjct: 756 DVKPDVFYYTVLIDWQCKIG 775
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
PD++ Y ++IN CR+ +A L E M+ + PDV TY++L++S
Sbjct: 633 PDLFTYTIMINTYCRLNEPKQAYALFEDMKRRDVK--PDVVTYSVLLNS 679
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
LG+ G V EA+ F M PDV Y +I C G + A L+ +E+ G
Sbjct: 406 LGKLGKVEEAIELFREMTGKGIAPDVINYTTLIGGCCLQGKCSDAFDLM--IEMDGTGKT 463
Query: 239 PDVYTYTILISSYCKYGM 256
PD+ Y +L G+
Sbjct: 464 PDIVIYNVLAGGLATNGL 481
>gi|224576651|gb|ACN56999.1| At1g03560-like protein [Capsella grandiflora]
Length = 207
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 84 RFNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 143
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++A L ++ME C VYTYTILIS K
Sbjct: 144 DEAMTLFKRMEEEE-GCDQTVYTYTILISGMFK 175
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +NE A F M + +P+V Y V+I+ + G+ A LL +M GF+ PDV
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK--PDVV 58
Query: 243 TYTILISSYCKYG 255
TY+++++ CK G
Sbjct: 59 TYSVVVNGLCKNG 71
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 39/133 (29%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC-- 215
M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+N LC
Sbjct: 13 MIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKN 70
Query: 216 ---------------------------------RVGNFNKARFLLEQMELPGFRCPPDVY 242
+ G ++A L E+M G C D Y
Sbjct: 71 GRVEEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG--CTRDSY 128
Query: 243 TYTILISSYCKYG 255
Y LI + K+G
Sbjct: 129 CYNALIDALTKHG 141
>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
Length = 500
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G + T + LI L G + +AL F M + C+P+ Y Y +I+ LCR
Sbjct: 247 RAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKV 306
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+AR L E+M PPD Y LI+ YCK G
Sbjct: 307 IQARELFEKMTQACI--PPDAVAYNSLIAGYCKRG 339
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G V +A F +M + C+P+V YNV+++ LC G +A L +M+
Sbjct: 156 LILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMK--S 213
Query: 235 FRCPPDVYTYTILISSYCK 253
C PDV TY L+ + CK
Sbjct: 214 HSCSPDVVTYNTLLDAVCK 232
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 137 EMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196
E+ + + VK + K+M + G V V L+ L G + +A F MK
Sbjct: 155 ELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNV--LLHGLCSSGQLEQANTLFAEMK 212
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C PDV YN +++A+C+ + L E M G+ P+V T++ LI C+ G
Sbjct: 213 SHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGY--VPNVITFSTLIHGLCRTG 269
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + +IK L +E E+ M C PDV+A+N V+ R N KAR + + M
Sbjct: 12 TYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHM 71
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G++ PD +Y ILI K G
Sbjct: 72 VESGYK--PDNVSYHILIHGLAKIG 94
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L V +A F +M Q PD AYN +I C+ G+ ++A L +M
Sbjct: 292 TYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREM 351
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P + T+ LI +CK G
Sbjct: 352 S-GGAGLQPTIVTFNTLIDGFCKLG 375
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM RG + + + L++ L + V+ A + F M + PD + +I
Sbjct: 102 ILSEMVMRG--QTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILG 159
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G A +QM P C P+V Y +L+ C G
Sbjct: 160 LCQAGKVKDASERFKQM--PKHGCQPNVPVYNVLLHGLCSSG 199
>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 822
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
G+G L T T +IK L G + +A+ F +M + P V YN +IN GN
Sbjct: 400 EGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNV 459
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N A LL+ M+ G C PD +TY L+S + K+G
Sbjct: 460 NNAARLLDLMKENG--CEPDEWTYNELVSGFSKWG 492
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ T LI ++G V+ AL+ RM++ C P+V +YN VIN L + F++A + ++M
Sbjct: 515 SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKM 574
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P+V TYT LI C+ G
Sbjct: 575 VEQGLL--PNVITYTTLIDGLCRNG 597
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 19/223 (8%)
Query: 38 KTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRT----PLKQRILKKEADNIANN 93
K + I +V +S+ +FF+ I ++ ++H + R+++ A++
Sbjct: 74 KAHHVAEIVAVHKDTESVIQFFYW----ISKRPFYKHNMNCFISMLNRLVRDRVFAPADH 129
Query: 94 VLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWD 153
+ +L A RN ++ I + +F + + F + +C + I A+ V+G +
Sbjct: 130 IRILMIKACRNEEE----IRRVADFLNEISGM-GFGFSLYSCNTLLIQLAKFEMVEGARN 184
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
K+M G L+T +T LI +L ++G V EA ++ Q+ PDV+ Y +I
Sbjct: 185 LYKQMLNSGIQPSLLTFNT---LINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLIL 241
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CR N + A + ++M G C P+ TY+ LI+ C G
Sbjct: 242 GHCRNRNLDLAFGVFDRMVKEG--CDPNSVTYSTLINGLCNEG 282
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T T LI L G A F+ M++ +C P++Y Y+ +I LC+ G ++A
Sbjct: 578 GLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA 637
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
E+M G C P + TY+ L+S C+ G
Sbjct: 638 ----ERMSEIG--CEPTLDTYSTLVSGLCRKG 663
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L +EG +EA RM + C P + Y+ +++ LCR G F +A L++ M
Sbjct: 620 TYSSLIYGLCQEGKADEA----ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDM 675
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ GF CP Y++LI ++CK
Sbjct: 676 KERGF-CPDREIYYSLLI-AHCK 696
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L EG V+EAL M + P VY Y + I ALC + + +A L+ +M
Sbjct: 270 TYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARM 329
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G C P+V TYT LIS + G
Sbjct: 330 KKRG--CRPNVQTYTALISGLSRLG 352
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 5/141 (3%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A + +HW+E N T E+ G +++ ++M + G L T T
Sbjct: 392 ALKIFHWMEGHGSL-ANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMG--PLPTVVTYNT 448
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI +G VN A MK+ C PD + YN +++ + G A F ++M G
Sbjct: 449 LINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECG 508
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+ +YT LI + K G
Sbjct: 509 LN--PNPVSYTALIDGHSKDG 527
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D L+EM +G V T T+ I L EA+ RMK+ CRP+V Y +I+
Sbjct: 289 DMLEEMIEKGIEPTVYTYTLP--ITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALIS 346
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L R+G A L +M G P+ TY LI+ C G
Sbjct: 347 GLSRLGKLEVAIGLYHKMLKEGL--VPNTVTYNALINELCVGG 387
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T LI L G + AL F+ M+ + YN +I LC G+ KA
Sbjct: 368 GLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKA 427
Query: 224 RFLLEQMELPGFRCP-PDVYTYTILISSYCKYG 255
L E+M G P P V TY LI+ Y G
Sbjct: 428 MVLFEKMLKMG---PLPTVVTYNTLINGYLTKG 457
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L G + A+ +++M + P+ YN +IN LC G F+ A + M
Sbjct: 340 TYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWM 399
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G + TY +I C G
Sbjct: 400 E--GHGSLANTQTYNEIIKGLCLGG 422
>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 695
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
FA+ + +FL + + +G T+T+ +I LG+ G + EA A F MK +
Sbjct: 266 FAKAGDPNKAMEFLGMV--QASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLK 323
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P AYN ++ + G A F++ +ME G PD TY++LI +Y G
Sbjct: 324 PKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSG--VSPDECTYSLLIDAYSNAG 375
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ LI GE+ EA + MK+ +PDV Y ++ AL RV FNK + E+M
Sbjct: 608 ALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKALIRVDKFNKVPSVYEEM 667
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQT 258
L G C PD +L S+ KY QT
Sbjct: 668 ILAG--CTPDRKARAMLRSA-LKYMKQT 692
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 149 KGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
+G W LKEM + +G +I G+ ++ A+ TF +M +PD
Sbjct: 409 RGEWQKSFQVLKEM--KNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDT 466
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+N +I+ C+ +A L E+M GF P V T+ I+I+S+
Sbjct: 467 VTWNTLIDCHCKAELHERAEELFEEMMEKGFS--PCVTTFNIMINSF 511
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ +EM +G VTT + +I GE+ ++ M+ P+V Y +I+
Sbjct: 487 ELFEEMMEKGFSPCVTTFNI--MINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLID 544
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ G F+ A LE M+ G + P Y LI++Y + G+
Sbjct: 545 IYGKSGRFSDAIECLEDMKSAGLK--PSSTMYNALINAYAQKGL 586
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 22/191 (11%)
Query: 73 RHRTPLKQRIL------KKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFF 126
R +P+ Q++ K E D +N +++G A +P NKA EF V+
Sbjct: 234 RIDSPILQKLYSEIQCDKLELDVQLSNDIIVGFAKAGDP-------NKAMEFLGMVQASG 286
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWD--FLKEMSRRGNGELVTTSTVTCLIKVLGEEGL 184
+ T + ++ A G++ + + +EM + NG T L+K + G+
Sbjct: 287 L---SPRTATLIAVISALGDSGRIIEAEAIFEEM--KDNGLKPKTRAYNGLLKGYVKAGM 341
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+ +A M++ PD Y+++I+A G + AR +L++ME P+ Y +
Sbjct: 342 LKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIM--PNSYVF 399
Query: 245 TILISSYCKYG 255
+ +++SY G
Sbjct: 400 SRILASYRDRG 410
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
Query: 124 RFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEE 182
R N VT + ++ + + L++M G L +ST+ LI ++
Sbjct: 528 RSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAG---LKPSSTMYNALINAYAQK 584
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
GL +A+ F M+ +P + A N +INA +A +L+ M+ + PDV
Sbjct: 585 GLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLK--PDVV 642
Query: 243 TYTILISSYCK 253
TYT L+ + +
Sbjct: 643 TYTTLMKALIR 653
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 152 WDFLKEM--SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
WD +K + + R G L T T LI + G+ G ++A+ MK +P YN
Sbjct: 517 WDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNA 576
Query: 210 VINALCRVG 218
+INA + G
Sbjct: 577 LINAYAQKG 585
>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
Length = 319
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 10/112 (8%)
Query: 150 GLW----DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G W K+M +G + +LVT S + L ++G +++AL F M+ PD+
Sbjct: 124 GFWKQKIQLFKDMHAQGCSPDLVTYSI---FLHGLSKQGYLDQALELFREMQNNYLNPDL 180
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
YN++I+A+C+ G AR L ++ + G PDV ++T +IS C+ G+
Sbjct: 181 VIYNILIDAMCKSGKLEDARELFLKLHVKGLL--PDVRSWTSIISGLCREGL 230
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQF 198
+F G + +G D E+ R + V LI + + G + +A F ++
Sbjct: 150 IFLHGLSKQGYLDQALELFREMQNNYLNPDLVIYNILIDAMCKSGKLEDARELFLKLHVK 209
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
PDV ++ +I+ LCR G ++A QME G CPPD +Y +++ +
Sbjct: 210 GLLPDVRSWTSIISGLCREGLLDEAYKAFRQMERDG--CPPDCCSYNVIVRGF 260
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V EA F M C PDV +YN++IN C+ ++A+ + ++M G P+ TY
Sbjct: 61 VFEARKVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGL--IPNTATY 118
Query: 245 TILISSYCKYGMQ 257
L+ + K +Q
Sbjct: 119 NTLLGGFWKQKIQ 131
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L + T +I L EGL++EA F +M++ C PD +YNV++ + ++A
Sbjct: 210 GLLPDVRSWTSIISGLCREGLLDEAYKAFRQMERDGCPPDCCSYNVIVRGFLQNNGASRA 269
Query: 224 RFLLEQMELPGFRCPPDVYTYTI 246
L ++M GF D T T+
Sbjct: 270 EQLFQEMFDRGF--SADALTRTL 290
>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
Length = 1116
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 151 LWDFLKEMSRRGNGELV-------TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
L D L R G E + T C I L + G V+ AL + RM + PD
Sbjct: 507 LIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPD 566
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+N++I C+ GNF +A L E+M + PDV T+ LI CK G
Sbjct: 567 KVTFNILIAGACKAGNFEQASALFEEMVAKNLQ--PDVMTFGALIDGLCKAG 616
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ N + + +E+ RG+ ++VT +T LI L + G + EA M C
Sbjct: 226 LCKSNELGAGMELFEELVERGHHPDVVTYNT---LIDSLCKAGDLEEARRLHGDMSSRSC 282
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P+V Y+V+IN LC+VG ++AR L+++M P++ TY + CK M
Sbjct: 283 VPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSM 338
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L++ S R + + VT ST LI L + G ++EA + F M P+V YN ++N L
Sbjct: 349 LRDGSLRVSPDTVTFST---LIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGL 405
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C+ +A ++E M G PDV TY++L+ ++CK
Sbjct: 406 CKADKMERAHAMIESMVDKGVT--PDVITYSVLVDAFCK 442
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G + L F EM+R G + T +I L + + + F + + PDV
Sbjct: 194 GETARALEIFRGEMARDGVAPTIVTYNT--IINGLCKSNELGAGMELFEELVERGHHPDV 251
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN +I++LC+ G+ +AR L ++ C P+V TY++LI+ CK G
Sbjct: 252 VTYNTLIDSLCKAGDLEEARRL--HGDMSSRSCVPNVVTYSVLINGLCKVG 300
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L++ S R + + VT ST LI L + G +EA F M P+V YNV++N L
Sbjct: 843 LRDGSLRVSPDTVTFST---LIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGL 899
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C+ +A ++E M G PDV TY++L+ ++CK
Sbjct: 900 CKTDKMERAHAMIESMVDKGVT--PDVITYSVLVDAFCK 936
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T L+ L + G +A+ M PDV YN +I++LC+ G+ +AR L
Sbjct: 707 TVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHG 766
Query: 229 QMELPGFR-CPPDVYTYTILISSYCKYG 255
M R C P+V TY++LI+ CK G
Sbjct: 767 DMSSRVSRCCVPNVVTYSVLINGLCKVG 794
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T C I L + G V+ AL +RM + PD +N++I C+ GNF +A L E
Sbjct: 1026 TYAFNCCINGLSKLGDVSRAL---HRMLELELVPDKVTFNILIAGACKAGNFEQASALFE 1082
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M + PDV T+ LI CK G
Sbjct: 1083 EMVAKNLQ--PDVMTFGALIDGLCKAG 1107
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++ FL+EM G + + T L+ L ++AL +K F
Sbjct: 647 LCKSGRIEEACQFLEEMVSSGC--VPDSITYGSLVYALCRASRTDDALQLVSELKSFGWD 704
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD YN++++ L + G +A +LE+M G PDV TY LI S CK G
Sbjct: 705 PDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHH--PDVVTYNTLIDSLCKAG 756
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 148 VKGLWD---------FLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
V GLW L+EM +G+ ++VT +T LI L + G + EA M
Sbjct: 714 VDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNT---LIDSLCKAGDLEEARRLHGDMSS 770
Query: 198 FR---CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
C P+V Y+V+IN LC+VG ++AR L+++M P++ TY + CK
Sbjct: 771 RVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQ 830
Query: 255 GM 256
M
Sbjct: 831 SM 832
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI + G +A A F M +PDV + +I+ LC+ G AR +L+ M G
Sbjct: 573 LIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLG 632
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PP+V TY L+ CK G
Sbjct: 633 V--PPNVVTYNALVHGLCKSG 651
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 157 EMSRRGNGELVTTSTVTC---------LIKVLGEEGLVNEALATFYRMKQFRCR--PDVY 205
E +RR +G++ + + C LI L + G ++EA M + C P++
Sbjct: 759 EEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNII 818
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN ++ LC+ +A L+ + R PD T++ LI CK G
Sbjct: 819 TYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCG 868
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + G V A M P+V YN +++ LC+ G +A LE+M
Sbjct: 604 TFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEM 663
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C PD TY L+ + C+
Sbjct: 664 VSSG--CVPDSITYGSLVYALCR 684
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD YA+N IN L ++G+ ++A + ++EL PD T+ ILI+ CK G
Sbjct: 1024 PDTYAFNCCINGLSKLGDVSRALHRMLELEL-----VPDKVTFNILIAGACKAG 1072
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDV Y+V+++A C+ + ++A LL M G C P+V T+ +I CK
Sbjct: 922 PDVITYSVLVDAFCKASHVDEALELLHGMASRG--CTPNVVTFNSIIDGLCK 971
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + + A A M PDV Y+V+++A C+ ++A LL M
Sbjct: 397 TYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGM 456
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C P+V T+ +I CK
Sbjct: 457 ASRG--CTPNVVTFNSIIDGLCK 477
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
++ M +G V T +V L+ + V+EAL + M C P+V +N +I+
Sbjct: 911 MIESMVDKGVTPDVITYSV--LVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDG 968
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ +A + + M L PD TY LI + G
Sbjct: 969 LCKSDQSGEAFQMFDDMTLK-HGLAPDKITYCTLIDGLFRTG 1009
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
++ M +G V T +V L+ + V+EAL + M C P+V +N +I+
Sbjct: 417 MIESMVDKGVTPDVITYSV--LVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDG 474
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ +A + + M L PD TY LI + G
Sbjct: 475 LCKSDRSGEAFQMFDDMALK-HGLVPDKITYCTLIDGLFRTG 515
>gi|357469235|ref|XP_003604902.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505957|gb|AES87099.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 449
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 97/217 (44%), Gaps = 23/217 (10%)
Query: 57 RFFFQSPRSIGRQTGFRHRTPLKQRI-----LKKEADNIANNVL---VLGPAAYRNPQKV 108
RFF + G Q+G+RH + +++ + K + I + + V G N +
Sbjct: 55 RFFIWA----GFQSGYRHSGYMYRKVCNLFEIDKNPEIICDVIKAYEVDGCVVNVNMFRE 110
Query: 109 TLGINKATE---FYHWVERFFHFFHNEVTCKEMGIVF---ARGNNVKGLWDFLKEMSRRG 162
L + K E WV R F + +V + +V+ +K+MS G
Sbjct: 111 VLKLCKEAENVDLGLWVLRKMEDFEMKPDTVMYNVVIKLVCKQGDVEMGEKLMKDMSLNG 170
Query: 163 NG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
+L+T T +I+ L G + EA M+ C P+ + V++ LCR+ +
Sbjct: 171 ICPDLITYMT---MIEGLCSAGRLEEAYEMVKVMRGNGCSPNSVVLSAVLDGLCRLDSME 227
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
+A LL++ME G C P+V TYT LI S+CK G T
Sbjct: 228 RALELLDEMEKSG-DCCPNVVTYTSLIQSFCKRGEWT 263
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 8/151 (5%)
Query: 105 PQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG 164
P++ LG+ F+ W + H+ +++ +F N + + D +K + +G
Sbjct: 47 PKQSQLGVR----FFIWAGFQSGYRHSGYMYRKVCNLFEIDKNPEIICDVIK--AYEVDG 100
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
+V + ++K+ E V+ L +M+ F +PD YNVVI +C+ G+
Sbjct: 101 CVVNVNMFREVLKLCKEAENVDLGLWVLRKMEDFEMKPDTVMYNVVIKLVCKQGDVEMGE 160
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L++ M L G PD+ TY +I C G
Sbjct: 161 KLMKDMSLNGI--CPDLITYMTMIEGLCSAG 189
>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Vitis vinifera]
Length = 587
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T+T T LI + G+ AL F+ M+ +C+P++ + ++NA R G KA +
Sbjct: 272 STATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIF 331
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
EQ++ G PDVY Y L+ +Y + G
Sbjct: 332 EQLQEAGLE--PDVYAYNALMEAYSRAG 357
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ EGL +A F ++++ PDVYAYN ++ A R G A + M
Sbjct: 310 TFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLM 369
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQ 257
+ G C PD +Y I++ +Y + G+
Sbjct: 370 QHMG--CEPDRASYNIMVDAYGRAGLH 394
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L+K GL+ +A A F M+++ P YN I+ L + G+ KA +
Sbjct: 202 TEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIF 261
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
E+M+ RC P TYT+LI+ Y K
Sbjct: 262 ERMKRD--RCQPSTATYTMLINLYGK 285
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G++ L +A +T+ + + RC P Y +++ A C G KA + +M G
Sbjct: 174 LIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYG 233
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F PP Y I K G
Sbjct: 234 F--PPSAVVYNAYIDGLMKGG 252
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-ELPG 234
I L + G +A+ F RMK+ RC+P Y ++IN G +K+ L+ E+
Sbjct: 245 IDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLY---GKASKSYMALKVFHEMRS 301
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
+C P++ T+T L++++ + G+
Sbjct: 302 QKCKPNICTFTALVNAFAREGL 323
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L++ G A F M+ C PD +YN++++A R G A+ + E M+ G
Sbjct: 349 LMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLG 408
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P + ++ +L+S+Y + G
Sbjct: 409 I--TPTMKSHMLLLSAYSRAG 427
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T + L+ G V + +M + +PD + N ++N R+G F K +L
Sbjct: 412 TMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVL 471
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
ME + P D+ TY ILI+ Y + G
Sbjct: 472 TAMEKGPY--PADISTYNILINIYGRAG 497
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PDV YN++I+A + + KA +EL RC P TY +L+ +YC G+
Sbjct: 166 PDVICYNLLIDAYGQKSLYKKAESTY--LELLEARCVPTEDTYALLLKAYCTSGL 218
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
++ ++ G GL +A A F MK+ P + ++ ++++A R G K ++ Q
Sbjct: 379 ASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQ 438
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M G + PD + +++ Y + G
Sbjct: 439 MHKSGIK--PDTFVLNSMLNLYGRLG 462
>gi|334182559|ref|NP_001184987.1| PPR repeat-containing protein [Arabidopsis thaliana]
gi|332190929|gb|AEE29050.1| PPR repeat-containing protein [Arabidopsis thaliana]
Length = 798
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
GN GL LK+M RG EL + + ++ L + G ++EAL+ F +MK PD+
Sbjct: 341 GNIDMGLV-LLKDMLSRGF-ELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDL 398
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
AY++VI+ LC++G F+ A +L ++M R P+ T+ L+ C+ GM
Sbjct: 399 VAYSIVIHGLCKLGKFDMALWLYDEM--CDKRILPNSRTHGALLLGLCQKGM 448
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+GE + +I + G + EAL F + + P V +N +I C+ N +
Sbjct: 462 SGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAE 521
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
AR +L+ ++L G P V +YT L+ +Y G
Sbjct: 522 ARKILDVIKLYGL--APSVVSYTTLMDAYANCG 552
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G V+ A + F + + P VY++N++IN LC VG+ +A L M G PD
Sbjct: 236 GFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVE--PDSV 293
Query: 243 TYTILISSYCKYGM 256
TY IL + GM
Sbjct: 294 TYNILAKGFHLLGM 307
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L G + EAL M + PD YN++ +G + A ++ M G
Sbjct: 263 LINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKG 322
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PDV TYTIL+ C+ G
Sbjct: 323 L--SPDVITYTILLCGQCQLG 341
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD YN +I LCRV + + A LE M+ TY ILI S C YG
Sbjct: 618 PDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASS--ATYNILIDSLCVYG 669
>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
Length = 581
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ N + + +E+ +RG+ ++VT +T LI L + G + EA M C
Sbjct: 91 LCKSNELGAGMELFEELVKRGHHPDVVTYNT---LIDSLCKAGDLEEARRLHGGMSSRGC 147
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P+V Y+V+IN LC+VG ++AR L+++M P++ TY + CK M
Sbjct: 148 VPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSM 203
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G + L F EM+R G + T +I L + + + F + + PDV
Sbjct: 59 GETARALEIFRGEMARDGVAPTIVTYNT--IINGLCKSNELGAGMELFEELVKRGHHPDV 116
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN +I++LC+ G+ +AR L M G C P+V TY++LI+ CK G
Sbjct: 117 VTYNTLIDSLCKAGDLEEARRLHGGMSSRG--CVPNVVTYSVLINGLCKVG 165
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI + G +A A F M +PDV + +I+ LC+ G AR +L+ M G
Sbjct: 369 LIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLG 428
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PP+V TY +L+ CK G
Sbjct: 429 V--PPNVVTYNVLVHGLCKSG 447
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L++ S R + + VT ST LI L + G +EA + P+V YN ++N L
Sbjct: 214 LRDGSLRVSPDTVTFST---LIDGLCKCGQTDEACNDDMIAGGYV--PNVVTYNALVNGL 268
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C+ +A ++E M G PDV TY++L+ ++CK
Sbjct: 269 CKADKMERAHAMIESMVDKGV--TPDVITYSVLVDAFCK 305
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
F + + V + L M+ RG T + VT +I L + EA ++
Sbjct: 303 FCKASRVDEALELLHGMASRG----CTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRM 358
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD +N++I C+ GNF +A L E+M + PDV T+ LI CK G
Sbjct: 359 LVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQ--PDVMTFGALIDGLCKAG 412
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G V A M P+V YNV+++ LC+ G + LE+M G
Sbjct: 404 LIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSG 463
Query: 235 FRCPPDVYTYTILISSYCK 253
C P+ TY L+ + C+
Sbjct: 464 --CVPESMTYGSLVYALCR 480
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+FL+EM +G + + T L+ L ++AL ++K F PD YN++++
Sbjct: 454 EFLEEMVS--SGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVD 511
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
L + G +A +LE+M G + PD +T+
Sbjct: 512 GLWKSGKTEQAITVLEEMVGKGHQ--PDSFTF 541
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + + A A M PDV Y+V+++A C+ ++A LL M
Sbjct: 260 TYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGM 319
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C P+V T+ +I CK
Sbjct: 320 ASRG--CTPNVVTFNSIIDGLCK 340
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ V+ D L M G V T V L+ L + G + E M C
Sbjct: 408 LCKAGQVEAARDILDLMGNLGVPPNVVTYNV--LVHGLCKSGRIEEPCEFLEEMVSSGCV 465
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ Y ++ ALCR + A L+ + L F PD TY IL+ K G
Sbjct: 466 PESMTYGSLVYALCRASRTDDALQLVSK--LKSFGWDPDTVTYNILVDGLWKSG 517
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA--LATFYRMKQFRCRPDVYAYNVV 210
+ ++EM+R+ L T + L ++ + EA L R R PD ++ +
Sbjct: 172 ELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTL 231
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
I+ LC+ G ++A + M G+ P+V TY L++ CK
Sbjct: 232 IDGLCKCGQTDEA--CNDDMIAGGY--VPNVVTYNALVNGLCK 270
>gi|357529169|sp|Q9LMY5.3|PPR41_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g13630
Length = 826
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
GN GL LK+M RG EL + + ++ L + G ++EAL+ F +MK PD+
Sbjct: 383 GNIDMGLV-LLKDMLSRGF-ELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDL 440
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
AY++VI+ LC++G F+ A +L ++M R P+ T+ L+ C+ GM
Sbjct: 441 VAYSIVIHGLCKLGKFDMALWLYDEM--CDKRILPNSRTHGALLLGLCQKGM 490
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+GE + +I + G + EAL F + + P V +N +I C+ N +
Sbjct: 504 SGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAE 563
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
AR +L+ ++L G P V +YT L+ +Y G
Sbjct: 564 ARKILDVIKLYGL--APSVVSYTTLMDAYANCG 594
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G V+ A + F + + P VY++N++IN LC VG+ +A L M G PD
Sbjct: 278 GFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVE--PDSV 335
Query: 243 TYTILISSYCKYGM 256
TY IL + GM
Sbjct: 336 TYNILAKGFHLLGM 349
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L G + EAL M + PD YN++ +G + A ++ M G
Sbjct: 305 LINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKG 364
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PDV TYTIL+ C+ G
Sbjct: 365 L--SPDVITYTILLCGQCQLG 383
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD YN +I LCRV + + A LE M+ TY ILI S C YG
Sbjct: 660 PDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASS--ATYNILIDSLCVYG 711
>gi|414883803|tpg|DAA59817.1| TPA: hypothetical protein ZEAMMB73_625576 [Zea mays]
Length = 350
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 148 VKGLWDFLK-----EMSRRGNGELVTTSTV---TCLIKVLGEEGLVNEALATFYRMKQ-- 197
+KGL D + +M R EL T V LIK L E EAL M
Sbjct: 71 IKGLCDGKRTGDAMDMVFRRMPELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTANG 130
Query: 198 -FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ C PDV +YN+VI+ L + G +KA FL +M GF PPD+ TY+ +I CK
Sbjct: 131 GYNCSPDVVSYNIVIDGLFKEGEVDKAYFLFHEMPGQGF--PPDLVTYSSVIDGLCK 185
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 175 LIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL- 232
LIK L + +A+ F RM + PDV++YN +I LC +A LL M
Sbjct: 70 LIKGLCDGKRTGDAMDMVFRRMPELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTAN 129
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G+ C PDV +Y I+I K G
Sbjct: 130 GGYNCSPDVVSYNIVIDGLFKEG 152
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG V++A F+ M PD+ Y+ VI+ LC+ +KA L+QM G
Sbjct: 144 VIDGLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKG 203
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+ Y LI YC G
Sbjct: 204 VM--PNTRPYNSLIHGYCSLG 222
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
+LVT S+V I L + +++A A+ +M P+ YN +I+ C +G +A
Sbjct: 172 DLVTYSSV---IDGLCKAQAMDKAEASLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAV 228
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL++M G + +V TY +LI YCK G
Sbjct: 229 RLLKKMSGGGLQL--NVVTYNMLIDYYCKIG 257
>gi|255685736|gb|ACU28357.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
Length = 178
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G V+EA F M + C D Y YN +I+A + G
Sbjct: 83 RFNGLAINSMFYSSLIDGLGKXGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKV 142
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
B+A L ++ME C VYTYTILIS
Sbjct: 143 BEAXALFKRMEEEE-GCDQTVYTYTILISG 171
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
E A F M + +P+V Y V+I+ + G+ A LL +M GF PDV TY++
Sbjct: 4 EGYAVFENMIRKGSKPNVAIYTVLIDGYAKXGSVEDAIRLLXRMIDEGF--XPDVVTYSV 61
Query: 247 LISSYCKYG 255
+++ CK G
Sbjct: 62 VVNGLCKNG 70
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 52/139 (37%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ RM PDV Y+VV+
Sbjct: 6 YAVFENMIRKGSKPNVAIYTV--LIDGYAKXGSVEDAIRLLXRMIDEGFXPDVVTYSVVV 63
Query: 212 NALCR-----------------------------------VGNFNKARFLLEQMELPGFR 236
N LC+ G ++A L E+M G
Sbjct: 64 NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKXGRVDEAERLFEEMSEKG-- 121
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI ++ K+G
Sbjct: 122 CTRDSYCYNALIDAFTKHG 140
>gi|224130680|ref|XP_002320901.1| predicted protein [Populus trichocarpa]
gi|222861674|gb|EEE99216.1| predicted protein [Populus trichocarpa]
Length = 475
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R + V G D L++M +G + + T L+ L + + EA RMK C
Sbjct: 250 ALCRKSQVNGAVDLLEDMLNKGY--VPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKGC 307
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD+ YN VI CR G A +LE ME G C P++ +Y L+ C GM
Sbjct: 308 NPDIIHYNTVILGFCREGRAMDACKVLEDMESNG--CMPNLVSYRTLVGGLCDQGM 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+ I+ + N +K +D K+ T + LI+ G ++ A + F +M +
Sbjct: 177 LEILVSHQNYIKPAFDLFKDA--HTYDVFPNTKSYNILIRAFCLNGQISMAYSLFNQMFK 234
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDV +Y +++ ALCR N A LLE M G+ PD +YT L++S C+
Sbjct: 235 RDVMPDVESYRILMQALCRKSQVNGAVDLLEDMLNKGYV--PDALSYTTLLNSLCR 288
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLG--EEGLVNEALATFYRMKQF 198
R ++ + L M +G N +++ +TV +LG EG +A M+
Sbjct: 286 LCRKKKLREAYKLLCRMKVKGCNPDIIHYNTV-----ILGFCREGRAMDACKVLEDMESN 340
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P++ +Y ++ LC G F++A+ LE+M + GF P LI +C G
Sbjct: 341 GCMPNLVSYRTLVGGLCDQGMFDEAKSHLEEMMMKGFS--PHFAVSNALIKGFCNVG 395
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A E + + R +F H+ + + + R + D L ++ + VT + +
Sbjct: 83 AKEIFDYASRQPNFQHSYSSYLILILKLGRAKYFSFIDDLLTDLKSKNYP--VTPTLFSY 140
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I + GE L ++AL FY + +F C P N ++ L N+ K F L + +
Sbjct: 141 IINIYGEANLPDKALKIFYTILKFDCNPSPKHLNGILEILVSHQNYIKPAFDLFK-DAHT 199
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ P+ +Y ILI ++C G
Sbjct: 200 YDVFPNTKSYNILIRAFCLNG 220
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L++ L + VN A+ M PD +Y ++N+LCR +A LL +M++ G
Sbjct: 247 LMQALCRKSQVNGAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKG 306
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD+ Y +I +C+ G
Sbjct: 307 --CNPDIIHYNTVILGFCREG 325
>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
Length = 655
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
RG + L+++ RG + ++ + ++G V++AL + F C PD
Sbjct: 169 RGGGFRSAVRVLEDLHARGCA--LDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPD 226
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
V +YN V+ LC + + L+E+M CPP++ T+ LIS C+ G+
Sbjct: 227 VVSYNAVLKGLCMAKRWGCVQELMEEMV--RMACPPNIVTFNTLISYLCRNGL 277
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ + GLV+ + +M C PDV Y VIN C+ G ++A LL+ M G
Sbjct: 373 LVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACG 432
Query: 235 FRCPPDVYTYTILISSYCK 253
C P+ +YTI++ C
Sbjct: 433 --CKPNTISYTIVLKGLCS 449
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V + + L++M G V T T +I +EGL++EA+ M C+
Sbjct: 377 FCQNGLVDRVIELLEQMLVHGCMPDVITYTT--VINGFCKEGLIDEAVMLLKSMTACGCK 434
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P+ +Y +V+ LC + A L+ QM G CP + T+ LI+ CK G+
Sbjct: 435 PNTISYTIVLKGLCSAERWVDAEDLMSQMIQQG--CPLNPITFNTLINFLCKKGL 487
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G V E + RM C P++ +N +I+ LCR G F + +L QM G C PD+
Sbjct: 244 GCVQELMEEMVRMA---CPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHG--CTPDIR 298
Query: 243 TYTILISSYCKYG 255
Y +I CK G
Sbjct: 299 MYATIIDGICKEG 311
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
C D +N++++ C+ G ++ LLEQM + G C PDV TYT +I+ +CK G+
Sbjct: 363 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHG--CMPDVITYTTVINGFCKEGL 417
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+ L EG +N+ + F ++ R D YN VI++LC+ G +A L M G
Sbjct: 548 IASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSG 607
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+ TYTILI G
Sbjct: 608 --CVPNESTYTILIRGLASEG 626
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 153 DFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ ++EM R +VT +T LI L GL +M + C PD+ Y +I
Sbjct: 248 ELMEEMVRMACPPNIVTFNT---LISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATII 304
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ +C+ G+ A +L +M P + P+V Y L+ C
Sbjct: 305 DGICKEGHLKVAHEILNRM--PSYGLKPNVVCYNTLLKGLCS 344
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++ L G + +ALA M + C P Y+V++ A CR G F A +LE + G
Sbjct: 128 VVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG 187
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C DV +++++ C G
Sbjct: 188 --CALDVGNCNLVLNAICDQG 206
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 148 VKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
V+ + LK+M G + +L++ STV I LG+ G +EAL M P+
Sbjct: 488 VEQAIELLKQMLVNGCSPDLISYSTV---IDGLGKAGKTDEALELLNVMVNKGMSPNTII 544
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y+ + +AL R G NK + + ++ R D Y +ISS CK G
Sbjct: 545 YSSIASALSREGRINKVIQMFDNIQDTTIR--SDAVLYNAVISSLCKRG 591
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D + +M ++G + T LI L ++GLV +A+ +M C PD+ +Y+ VI+
Sbjct: 458 DLMSQMIQQGCP--LNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVID 515
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L + G ++A LL M G P+ Y+ + S+ + G
Sbjct: 516 GLGKAGKTDEALELLNVMVNKGMS--PNTIIYSSIASALSREG 556
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I + +EG + A RM + +P+V YN ++ LC + + LL +M
Sbjct: 303 IIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMF--D 360
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
CP D T+ IL+ +C+ G+
Sbjct: 361 KDCPLDDVTFNILVDFFCQNGL 382
>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
Length = 838
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T+T T LI + G+ AL F+ M+ +C+P++ + ++NA R G KA +
Sbjct: 202 STATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIF 261
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
EQ++ G PDVY Y L+ +Y + G
Sbjct: 262 EQLQEAGLE--PDVYAYNALMEAYSRAG 287
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ EGL +A F ++++ PDVYAYN ++ A R G A + M
Sbjct: 240 TFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLM 299
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQ 257
+ G C PD +Y I++ +Y + G+
Sbjct: 300 QHMG--CEPDRASYNIMVDAYGRAGLH 324
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 129 FHNEVTCKEMGIVFARGNNV---KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLV 185
FH +V C + ++ A G K +L+ + R + T T L+K GL+
Sbjct: 94 FHPDVICYNL-LIDAYGQKSLYKKAESTYLELLEARC---VPTEDTYALLLKAYCTSGLL 149
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+A A F M+++ P YN I+ L + G+ KA + E+M+ RC P TYT
Sbjct: 150 EKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRD--RCQPSTATYT 207
Query: 246 ILISSYCK 253
+LI+ Y K
Sbjct: 208 MLINLYGK 215
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G++ L +A +T+ + + RC P Y +++ A C G KA + +M G
Sbjct: 104 LIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYG 163
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F PP Y I K G
Sbjct: 164 F--PPSAVVYNAYIDGLMKGG 182
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L++ G A F M+ C PD +YN++++A R G A+ + E M+
Sbjct: 278 ALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRL 337
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G P + ++ +L+S+Y + G
Sbjct: 338 GIT--PTMKSHMLLLSAYSRAG 357
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-ELPG 234
I L + G +A+ F RMK+ RC+P Y ++IN G +K+ L+ E+
Sbjct: 175 IDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLY---GKASKSYMALKVFHEMRS 231
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
+C P++ T+T L++++ + G+
Sbjct: 232 QKCKPNICTFTALVNAFAREGL 253
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ G V + +M + +PD + N ++N R+G F K +L ME
Sbjct: 349 LLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGP 408
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ P D+ TY ILI+ Y + G
Sbjct: 409 Y--PADISTYNILINIYGRAG 427
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ G GL +A A F MK+ P + ++ ++++A R G K ++ QM G
Sbjct: 314 MVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSG 373
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ PD + +++ Y + G
Sbjct: 374 IK--PDTFVLNSMLNLYGRLG 392
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PDV YN++I+A + + KA +EL RC P TY +L+ +YC G+
Sbjct: 95 HPDVICYNLLIDAYGQKSLYKKAES--TYLELLEARCVPTEDTYALLLKAYCTSGL 148
>gi|341605777|gb|AEK82991.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605779|gb|AEK82992.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605809|gb|AEK83007.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605811|gb|AEK83008.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALXKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM +G V + +I L +EG +NE A F M + +P+V Y V+I+
Sbjct: 6 QEMDEKGI--QVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 63
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G+ A LL +M GF+ PDV TY+++++ CK G
Sbjct: 64 KSGSVEDAIRLLHRMIDEGFK--PDVVTYSVVVNGLCKNG 101
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALXKHG 171
>gi|399107206|gb|AFP20367.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 116 RFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 175
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 176 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 204
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 25 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 84
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 85 FK--PDVVTYSVVVNGLCKNG 103
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 39 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 96
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 97 NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 154
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 155 CTRDSYCYNALIDALTKHG 173
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+A + M + + + +++VI LC+ G N+ + E M G + P+V YT+LI
Sbjct: 4 VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLI 61
Query: 249 SSYCKYG 255
Y K G
Sbjct: 62 DGYAKSG 68
>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L L + G V+ A + M + ++Y YN ++N LC+ GN ++A L++ M
Sbjct: 365 TYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDM 424
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E+ GF PD TYT L+ +YCK
Sbjct: 425 EVAGFH--PDAVTYTTLMDAYCK 445
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 155 LKEMSRRG---NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
L+EM G +G + TT LI + G V+ A F M++ + PD Y VI
Sbjct: 246 LREMISEGIAPDGVIYTT-----LIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVI 300
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G +A L +M R PD TYT LI YCK G
Sbjct: 301 CGLCQTGRVMEADKLFHEMVCK--RLEPDEVTYTALIDGYCKEG 342
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI +EG + EA + +M Q P++ Y + + LC+ G + A LL +M
Sbjct: 330 TYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEM 389
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G ++YTY L++ CK G
Sbjct: 390 CRKGLEL--NIYTYNSLVNGLCKAG 412
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 148 VKGLW--DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
+KG W ++EM +G T +I +L + G V EA M PD
Sbjct: 202 LKGEWVLKLIEEMQIKGLKP--NPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGV 259
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +I+ C++GN + A L ++M+ + PD TYT +I C+ G
Sbjct: 260 IYTTLIDGFCKLGNVSSAYRLFDEMQ--KRKISPDFITYTAVICGLCQTG 307
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L EM R+G + T L+ L + G +++A+ M+ PD Y +++
Sbjct: 384 ELLHEMCRKGLE--LNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMD 441
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
A C+ +A LL QM P V T+ +L++ +C GM
Sbjct: 442 AYCKSREMVRAHELLRQM--LDRELQPTVVTFNVLMNGFCMSGM 483
>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
Length = 567
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ ++ L MS RG ++VT S+ LI + G V A+ M + C
Sbjct: 224 LCKSGDLDSASRMLDHMSNRGCTPDVVTYSS---LIDGFCKGGEVERAMGLLDSMLKLGC 280
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
RP++ AYN ++ AL R+G+ KA +L +ME GF PDV +Y I CK
Sbjct: 281 RPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGF--TPDVVSYNACIDGLCK 331
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 154 FLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L+EM+ RG ++VT ++ IK L + V+EA RM PDV +Y VIN
Sbjct: 169 MLEEMAVRGYFPDVVTYNS---FIKGLCKCDRVDEARKFLARMPV---TPDVVSYTTVIN 222
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G+ + A +L+ M G C PDV TY+ LI +CK G
Sbjct: 223 GLCKSGDLDSASRMLDHMSNRG--CTPDVVTYSSLIDGFCKGG 263
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
Query: 136 KEMGIV------------FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG 183
KEMG V +++ + + FL EM + N L T T T ++ L +
Sbjct: 69 KEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVK--NHCLPTVVTYTNIVDGLCKAE 126
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
+A+ M+ C P++Y YNV++ LC ++A+ +LE+M + G+ PDV T
Sbjct: 127 RTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYF--PDVVT 184
Query: 244 YTILISSYCK 253
Y I CK
Sbjct: 185 YNSFIKGLCK 194
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP---------- 202
D L EM RRG V + I L + V +A A F RM + C P
Sbjct: 305 DMLVEMERRGFTPDVVSYNAC--IDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIV 362
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
D+ Y V+++ LC+ G F++A L ++ L C PDV+ Y +++ S+CK
Sbjct: 363 DILLYTVLLDGLCKGGRFDEACALFSKV-LDEKICEPDVFFYNVMLDSHCK 412
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
++A A F M C+PD + + +++ LCR KAR LL +M+ G C PD Y
Sbjct: 24 DKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMG--CVPDDAIYN 81
Query: 246 ILISSYCK 253
LIS Y K
Sbjct: 82 ALISGYSK 89
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM +G + T V +++ L EE ++EA M PDV YN I
Sbjct: 134 LLDEMRDKGCSPNIYTYNV--IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKG 191
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ ++AR L +M + PDV +YT +I+ CK G
Sbjct: 192 LCKCDRVDEARKFLARMPV-----TPDVVSYTTVINGLCKSG 228
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 142 FARGNNVK---GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
F +G V+ GL D + ++ R N +V +++ + LG G + L R + F
Sbjct: 259 FCKGGEVERAMGLLDSMLKLGCRPN--MVAYNSLLGALHRLGHIGKAEDMLVEMER-RGF 315
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP----------DVYTYTILI 248
PDV +YN I+ LC+ KA+ + ++M G C P D+ YT+L+
Sbjct: 316 T--PDVVSYNACIDGLCKAERVKKAKAVFDRMVERG--CTPNASSYSMLIVDILLYTVLL 371
Query: 249 SSYCKYG 255
CK G
Sbjct: 372 DGLCKGG 378
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQ 229
T L++ L + +A RMK+ C PD YN +I+ + +F +A +FL E
Sbjct: 44 TFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEM 103
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
++ C P V TYT ++ CK
Sbjct: 104 VK---NHCLPTVVTYTNIVDGLCK 124
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L + G ++ A M C PDV Y+ +I+ C+ G +A LL+ M
Sbjct: 218 TTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLK 277
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C P++ Y L+ + + G
Sbjct: 278 LG--CRPNMVAYNSLLGALHRLG 298
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 173 TCLIKVLGEEGLVNEALATFYR-MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
T L+ L + G +EA A F + + + C PDV+ YNV++++ C+ +KA + +QM
Sbjct: 368 TVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQM- 426
Query: 232 LPGFRCPPDVYTYTILISSYC 252
L C +V T+ IL+ C
Sbjct: 427 LEKNCC--NVVTWNILVHGLC 445
>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
Length = 814
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G+G T LIK G++++A+ F M+ +P+V Y VI ALCR+G +
Sbjct: 387 GDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMD 446
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A QM G PD Y Y LI +C +G
Sbjct: 447 DAMEKFNQMIDQGV--APDKYAYHCLIQGFCTHG 478
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 175 LIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L+K E +EAL +R + C PDV++Y++++ +LC G +A LL M
Sbjct: 152 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 211
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G C PDV Y +I + K G
Sbjct: 212 GAVCSPDVVAYNTVIDGFFKEG 233
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL++M +G L T LI G EA+ F M++ PDV +N+++ +
Sbjct: 276 FLRQMVNKG--VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGS 333
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G +AR + + M + G PDV++Y I+++ Y G
Sbjct: 334 LCKYGKIKEARDVFDTMAMKGQN--PDVFSYNIMLNGYATKG 373
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 153 DFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
D L+ M+ G + ++V +TV I +EG VN+A F M Q PD Y+
Sbjct: 203 DLLRMMAEGGAVCSPDVVAYNTV---IDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSS 259
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V++ALC+ +KA L QM G P+ +TY LI Y G
Sbjct: 260 VVHALCKARAMDKAEAFLRQMVNKGVL--PNNWTYNNLIYGYSSTG 303
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R +G T T +I L G +++A+ F +M PD YAY+ +I C G+
Sbjct: 421 RDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSL 480
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
KA+ L+ ++ G D+ ++ +I++ CK G
Sbjct: 481 LKAKELISEIMNNGMHL--DIVLFSSIINNLCKLG 513
>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 152 WDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+D EM RG +VT +T LI + E V EA +MK+ P++ YN +
Sbjct: 287 FDLFDEMRERGVEANVVTYNT---LIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTL 343
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I C VGN +KA LL+Q++ G P + TY ILI Y K G
Sbjct: 344 IGGFCDVGNLDKASSLLDQLKSNGL--SPSLVTYNILIEGYSKAG 386
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFR 199
+++ N KG+ D +EM RG ++ S VTC LI + +A + M++F
Sbjct: 382 YSKAGNWKGVADLAREMEGRG----ISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFG 437
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDVY Y V+I+ LC GN ++ L M P Y +I YCK
Sbjct: 438 LVPDVYVYGVLIHGLCMKGNMKESSKLFRSM--GEMHVEPSDVIYNTMIHGYCK 489
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+F +G G +D ++M + NG T CL+ EG + A F M++
Sbjct: 242 LFKKGLKKDG-FDLFEKM--KINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGV 298
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+V YN +I +CR +A L++QM+ P++ TY LI +C G
Sbjct: 299 EANVVTYNTLIGGMCREERVWEAEKLVDQMKKAA--VSPNLITYNTLIGGFCDVG 351
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T LI L ++GL + F +MK P++Y YN ++N C G +A
Sbjct: 227 GLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRA 286
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
L ++M G +V TY LI C+
Sbjct: 287 FDLFDEMRERGVE--ANVVTYNTLIGGMCR 314
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R N + W F E+ R ++ + +IK E G ++++ ++
Sbjct: 138 LVRSNCFEKAWLFFNELKERVKFDVYSFGI---MIKGCCENGNLDKSFQLLGLLQDMGLS 194
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
P+V Y +I+ C+ G+ +AR ++M G + YT+T+LI+ K G++
Sbjct: 195 PNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGL--VANQYTFTVLINGLFKKGLK 248
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI + G + A F +M + + Y + V+IN L + G L E+M++
Sbjct: 201 TTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKI 260
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G P++YTY L++ YC G
Sbjct: 261 NGLF--PNLYTYNCLMNEYCGEG 281
>gi|195655361|gb|ACG47148.1| ATP binding protein [Zea mays]
Length = 551
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 93/236 (39%), Gaps = 40/236 (16%)
Query: 45 IESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLKQRILK------------KEADNIAN 92
+E + ++L++ R + ++ R RTP + L KEA+ +
Sbjct: 182 VEGLLEILRAYTEKHLTHMRKLAKKRRVRMRTPPETDALNVLLDAFCKCGMVKEAEAVFG 241
Query: 93 NV-------------LVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMG 139
V L G R+P+K + + + H E F + E C G
Sbjct: 242 RVKRKLLGNAETYSTLFFGWCRARDPKKAMKVLEEMIQMKHTPESFTYVAAIESFCSA-G 300
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELV---TTSTVTCLIKVLGEEGLVNEALATFYRMK 196
+V + + L++F+ R G V T T + +I L + + E M+
Sbjct: 301 LV----SEARELFEFM-----RTEGLTVSSPTAKTYSIMIVALAKADRMEECFELLSDMR 351
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C PDV Y +I +C VG + A +L++M GF PPD+ TY ++ C
Sbjct: 352 TCGCMPDVTTYKDLIEGMCLVGRLDAAYRVLDEMGRAGF--PPDIVTYNCFLNVLC 405
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M + A+ + ++ ++ L +M R G + +T LI+ + G ++ A M +
Sbjct: 330 MIVALAKADRMEECFELLSDM--RTCGCMPDVTTYKDLIEGMCLVGRLDAAYRVLDEMGR 387
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ YN +N LC + N + A L E+M C P V+TY +L+ + + G
Sbjct: 388 AGFPPDIVTYNCFLNVLCSLRNADDALELCERM--IEAHCEPSVHTYNMLMMMFFEMG 443
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 13/136 (9%)
Query: 122 VERFFHFFHNEVTCKEMGIVFARGNNVKGL---------WDFLKEMSRRGNGELVTTSTV 172
+E F + TC M V + ++G+ + L EM R G + T
Sbjct: 340 MEECFELLSDMRTCGCMPDVTTYKDLIEGMCLVGRLDAAYRVLDEMGRAGFPPDIVT--Y 397
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
C + VL ++AL RM + C P V+ YN+++ +G ++A + +M+
Sbjct: 398 NCFLNVLCSLRNADDALELCERMIEAHCEPSVHTYNMLMMMFFEMGEAHRALDIWLEMDK 457
Query: 233 PGFRCPPDVYTYTILI 248
G C + TY I+I
Sbjct: 458 RG--CQRAIDTYEIMI 471
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T + L+ + G+V EA A F R+K+ + + Y+ + CR + KA +LE
Sbjct: 217 TDALNVLLDAFCKCGMVKEAEAVFGRVKR-KLLGNAETYSTLFFGWCRARDPKKAMKVLE 275
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
+M + P+ +TY I S+C G+
Sbjct: 276 EM--IQMKHTPESFTYVAAIESFCSAGL 301
>gi|413917024|gb|AFW56956.1| hypothetical protein ZEAMMB73_276172 [Zea mays]
Length = 666
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + N++ +W +++ M G + V L++ L + G+++E + F + +
Sbjct: 343 YCKMGNLEKVWHYIEAMVSHGIE--INCYIVGYLLQCLKKLGMISEVIVHFQKFRDLGLH 400
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D YN+ ++A C++GN N+A LL +M G PD YT LI+ YC G
Sbjct: 401 LDGVLYNIAMDAYCKLGNMNEAVKLLTEMMAGGL--VPDKIHYTCLINGYCLKG 452
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
TCLI +G + A F +M + +PDV YN++ + R G K LLE M
Sbjct: 442 TCLINGYCLKGEMENAWQVFEQMLKENVKPDVVTYNILASGYSRNGTVIKVYDLLEHMMN 501
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G P+ TY + I+S+C+ G
Sbjct: 502 QGLE--PNSLTYGVAITSFCRGG 522
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+ + Q R + AYN+VI+ LC+ +A +L+ G PD+Y Y+ LI S
Sbjct: 285 VLHEITQERVAIESIAYNMVIDGLCKEMKLEEAEKVLDIKTRHG--STPDLYGYSYLIRS 342
Query: 251 YCKYG 255
YCK G
Sbjct: 343 YCKMG 347
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +NEA+ M PD Y +IN C G A + EQM + PDV
Sbjct: 417 GNMNEAVKLLTEMMAGGLVPDKIHYTCLINGYCLKGEMENAWQVFEQMLKENVK--PDVV 474
Query: 243 TYTILISSYCKYG 255
TY IL S Y + G
Sbjct: 475 TYNILASGYSRNG 487
>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
G+G L T T +IK L G + +A+ F +M + P V YN +IN GN
Sbjct: 442 EGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNV 501
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N A LL+ M+ G C PD +TY L+S + K+G
Sbjct: 502 NNAARLLDLMKENG--CEPDEWTYNELVSGFSKWG 534
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 6/126 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
+E T E+ F++ ++ + +EM G N V+ +T LI ++G V+ AL
Sbjct: 519 DEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTT---LIDGHSKDGKVDIAL 575
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
+ RM++ C P+V +YN VIN L + F++A + ++M G P+V TYT LI
Sbjct: 576 SLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLL--PNVITYTTLID 633
Query: 250 SYCKYG 255
C+ G
Sbjct: 634 GLCRNG 639
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 19/223 (8%)
Query: 38 KTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRT----PLKQRILKKEADNIANN 93
K + I +V +S+ +FF+ I ++ ++H + R+++ A++
Sbjct: 116 KAHHVAEIVAVHKDTESVIQFFYW----ISKRPFYKHNMNCFISMLNRLVRDRVFAPADH 171
Query: 94 VLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWD 153
+ +L A RN ++ I + +F + + F + +C + I A+ V+G +
Sbjct: 172 IRILMIKACRNEEE----IRRVADFLNEISGM-GFGFSLYSCNTLLIQLAKFEMVEGARN 226
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
K+M G L+T +T LI +L ++G V EA ++ Q+ PDV+ Y +I
Sbjct: 227 LYKQMLNSGIQPSLLTFNT---LINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLIL 283
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CR N + A + ++M G C P+ TY+ LI+ C G
Sbjct: 284 GHCRNRNLDLAFGVFDRMVKEG--CDPNSVTYSTLINGLCNEG 324
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T T LI L G A F+ M++ +C P++Y Y+ +I LC+ G ++A
Sbjct: 620 GLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA 679
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL++ME G PD T+T LI + G
Sbjct: 680 EILLKEMERKGL--APDEVTFTSLIDGFVVLG 709
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L EG V+EAL M + P VY Y + I ALC + + +A L+ +M
Sbjct: 312 TYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARM 371
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G C P+V TYT LIS + G
Sbjct: 372 KKRG--CRPNVQTYTALISGLSRLG 394
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 5/141 (3%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A + +HW+E N T E+ G +++ ++M + G L T T
Sbjct: 434 ALKIFHWMEGHGSL-ANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMG--PLPTVVTYNT 490
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI +G VN A MK+ C PD + YN +++ + G A F ++M G
Sbjct: 491 LINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECG 550
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+ +YT LI + K G
Sbjct: 551 LN--PNPVSYTTLIDGHSKDG 569
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
RM + C P + Y+ +++ LCR G F +A L++ M+ GF CP Y++LI ++CK
Sbjct: 779 RMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGF-CPDREIYYSLLI-AHCK 836
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D L+EM +G V T T+ I L EA+ RMK+ CRP+V Y +I+
Sbjct: 331 DMLEEMIEKGIEPTVYTYTLP--ITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALIS 388
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L R+G A L +M G P+ TY LI+ C G
Sbjct: 389 GLSRLGKLEVAIGLYHKMLKEGL--VPNTVTYNALINELCVGG 429
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +E +EA +M + P+V Y +I+ LCR G A + ME
Sbjct: 596 VINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDME--K 653
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+C P++YTY+ LI C+ G
Sbjct: 654 RKCLPNLYTYSSLIYGLCQEG 674
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T LI L G + AL F+ M+ + YN +I LC G+ KA
Sbjct: 410 GLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKA 469
Query: 224 RFLLEQMELPGFRCP-PDVYTYTILISSYCKYG 255
L E+M G P P V TY LI+ Y G
Sbjct: 470 MVLFEKMLKMG---PLPTVVTYNTLINGYLTKG 499
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L G + A+ +++M + P+ YN +IN LC G F+ A + M
Sbjct: 382 TYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWM 441
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G + TY +I C G
Sbjct: 442 E--GHGSLANTQTYNEIIKGLCLGG 464
>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 557
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E TCK G K L EM +G + T V ++ + +EG V++A+
Sbjct: 199 EATCKRSG--------YKQAMKLLDEMRAKGCAPDIITYNV--VVNGICQEGRVDDAIEF 248
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+ C P+ +YN+V+ LC + A L+ +M G+ PP+V T+ +LIS
Sbjct: 249 LKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGY--PPNVVTFNMLISFL 306
Query: 252 CKYGM 256
C+ G+
Sbjct: 307 CRRGL 311
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI+ L G AL M + C PDV Y +++ A C+ + +A LL++M
Sbjct: 158 TYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEM 217
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C PD+ TY ++++ C+ G
Sbjct: 218 RAKG--CAPDIITYNVVVNGICQEG 240
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+ EMS++G V T + LI L GLV A+ ++ ++ C P+ +YN +++A
Sbjct: 283 LMAEMSQKGYPPNVVTFNM--LISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHA 340
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ ++A +E M G C PD+ +Y L+++ C+ G
Sbjct: 341 FCKQKKMDRAMAFVELMVSRG--CYPDIVSYNTLLTALCRGG 380
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L +M RRG V T T+ L++ + +A+ M+ C PD+ YNVV+N +
Sbjct: 179 LDDMLRRGCVPDVVTYTI--LLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGI 236
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C+ G + A L+ LP C P+ +Y I++ C
Sbjct: 237 CQEGRVDDAIEFLKS--LPSHGCEPNTVSYNIVLKGLC 272
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F + + F++ M RG ++V+ +T L+ L G V+ A+ +++K
Sbjct: 340 AFCKQKKMDRAMAFVELMVSRGCYPDIVSYNT---LLTALCRGGEVDAAVELLHQLKDKG 396
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C P + +YN VI+ L + G +A LL +M G + PD+ TY+ + S C+
Sbjct: 397 CTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQ--PDIITYSTISSGLCR 448
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 48/117 (41%), Gaps = 24/117 (20%)
Query: 153 DFLKEMSRRGNGE----LVTTST----------VTCLIKVLGEEGLVNEALATFYRMKQF 198
D L+ + RRG+ E LV + + LIK L G EA R
Sbjct: 64 DRLRGLVRRGDLEEALRLVESMSGLEPSAAPGPCAALIKKLCASGRTAEA-----RRVLA 118
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C PDV AYN ++ C G + AR L+ M + PD YTY LI C G
Sbjct: 119 ACEPDVMAYNAMVAGYCVTGQLDAARRLVADMPM-----EPDSYTYNTLIRGLCGRG 170
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y YN +I LC G A +L+ M G C PDV TYTIL+ + CK
Sbjct: 154 PDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRG--CVPDVVTYTILLEATCK 203
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++ A+A M C PD+ +YN ++ ALCR G + A LL Q++ G C P + +Y
Sbjct: 347 MDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKG--CTPVLISY 404
Query: 245 TILISSYCKYG 255
+I K G
Sbjct: 405 NTVIDGLTKAG 415
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ K + L EM +G +++T ST++ L E + EA+ F +++
Sbjct: 411 LTKAGKTKEALELLNEMVTKGLQPDIITYSTIS---SGLCREDRIEEAIRAFCKVQDMGI 467
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
RP+ YN ++ LC+ + A L M G C P+ TYTILI G+
Sbjct: 468 RPNTVLYNAILLGLCKRRETHNAIDLFIYMISNG--CMPNESTYTILIEGLTYEGL 521
>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
Length = 899
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI+ L E V EAL M Q C +++ Y ++I LC+ G + AR +LE+M L
Sbjct: 164 TILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPL 223
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G P V+TY +I YCK G
Sbjct: 224 RGV--VPSVWTYNAMIDGYCKSG 244
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G ++T T T L+ + G + A +M C+ D Y Y+V++ ALC+ N+A
Sbjct: 501 GVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEA 560
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+L+QM L G +C ++ YTI+IS K G
Sbjct: 561 LSILDQMTLSGVKC--NIVAYTIIISEMIKEG 590
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L++ L ++ +NEAL+ +M + ++ AY ++I+ + + G + A+ + +M
Sbjct: 543 TYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEM 602
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + P TYT+ ISSYCK G
Sbjct: 603 ISSGHK--PSATTYTVFISSYCKIG 625
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G + T T LIK L +EG ++ A M P V+ YN +I+ C+ G
Sbjct: 189 DGCSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKD 248
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYC 252
A + ME G C PD +TY ILI C
Sbjct: 249 ALGIKALMERNG--CNPDDWTYNILIYGLC 276
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
++ TS + KV G V AL F M+ CRP+ + Y+ +I L + +KA
Sbjct: 370 VIYTSIIDGYCKV----GKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMA 425
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCK 253
L+ +M+ G P V TYT LI CK
Sbjct: 426 LITKMQEDGI--TPGVITYTTLIQGQCK 451
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++AL M C+ D+ AY V+IN L + F +A+ + +M G P+V Y
Sbjct: 315 IDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGL--APNVVIY 372
Query: 245 TILISSYCKYG 255
T +I YCK G
Sbjct: 373 TSIIDGYCKVG 383
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I + +EG + A + F M +P Y V I++ C++G +A L+ +ME
Sbjct: 580 TIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMER 639
Query: 233 PGFRCPPDVYTYTILISS 250
G PDV TY + I+
Sbjct: 640 DGV--APDVVTYNVFING 655
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + G L+EM RG + + T +I + G + +AL M++ C
Sbjct: 205 LCKEGRIHGARRVLEEMPLRG--VVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCN 262
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD + YN++I LC ++A LL + GF P V T+T +I+ YCK
Sbjct: 263 PDDWTYNILIYGLCG-EKPDEAEELLNDAIVRGF--TPTVITFTNIINGYCK 311
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L ++ +++A+A +M++ P V Y +I C+ F+ A L E M
Sbjct: 406 TYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMM 465
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G PD Y +L + CK G
Sbjct: 466 EQNGL--TPDEQAYNVLTHALCKSG 488
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 2/141 (1%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F+ WV R F H + + + AR + M + V
Sbjct: 71 ALAFFEWVARRPGFRHTAASHAALLQLLARRRAPANYDKLVVSMVSCSDTAEDMREAVDA 130
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+ + G + +A M CR + Y+Y ++I LC +A LL M G
Sbjct: 131 IQAIRRVGGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLVMMVQDG 190
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C +++TYT+LI CK G
Sbjct: 191 --CSLNLHTYTLLIKGLCKEG 209
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EM G+ TT TV I + G + EA M++ PDV YNV IN
Sbjct: 601 EMISSGHKPSATTYTV--FISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGH 658
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+G ++A L++M C P+ +TY IL+ + K +
Sbjct: 659 MGYMDRAFSTLKRM--IDASCEPNYWTYWILLKHFLKMSL 696
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI VL ++ EA T M P+V Y +I+ C+VG A + ME G
Sbjct: 340 LINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEG 399
Query: 235 FRCPPDVYTYTILI 248
C P+ +TY+ LI
Sbjct: 400 --CRPNAWTYSSLI 411
>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 947
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI G VN+A + M + P++ YN +IN LC+ GN ++A+ L +++
Sbjct: 746 TYCTLIHGYSAAGNVNDAFSLRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKL 805
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L G P+V +Y ILI YCK G
Sbjct: 806 HLKGL--APNVISYNILIDGYCKNG 828
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++K+ E+G++ AL F M + C P + + N ++++L R G + A + + + G
Sbjct: 154 ILKIYCEKGMIKNALHVFDNMGKLGCVPSLRSCNRLLSSLVRKGESSNAILVYDHINRLG 213
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PDV+T +I++++YCK G
Sbjct: 214 I--VPDVFTCSIMVNAYCKDG 232
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
++ NV + EM +RG + T LI L + G ++ A F ++
Sbjct: 754 YSAAGNVNDAFSLRDEMLKRGLAPNIITYNA--LINGLCKSGNLDRAQKLFDKLHLKGLA 811
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V +YN++I+ C+ GN +A L +M G P + TY+ LI +CK G
Sbjct: 812 PNVISYNILIDGYCKNGNTREALDLRNKMLKEGI--SPSLITYSALIYGFCKQG 863
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YA+N +IN C++ +A +M+ GF PD TY LI YCK G
Sbjct: 500 YAFNTMINGFCKMEKMIEAEETFNRMKELGFE--PDGVTYRTLIDGYCKLG 548
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ YN+ I LC+ G + A+ + + L GF PD +TY LI Y G
Sbjct: 707 PNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGF--SPDNFTYCTLIHGYSAAG 758
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVYAYNVVINA 213
LK M RG L T+T LIK + + EA M++ D YAY V+I+
Sbjct: 276 LKLMGERG--ILRNKVTLTLLIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDG 333
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CRV + A L ++M G R +++ LI+ YCK G
Sbjct: 334 YCRVCKMDDAVRLRDEMLNVGLR--MNLFICNALINGYCKNG 373
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
L +E L RM F C N +IN C+ G ++A LL M + + P+ Y+
Sbjct: 346 LRDEMLNVGLRMNLFIC-------NALINGYCKNGQVSEAERLL--MRMVDWDLEPESYS 396
Query: 244 YTILISSYCKYGMQT 258
Y+ L+ +C+ G+ T
Sbjct: 397 YSTLMDGFCREGLVT 411
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 19/143 (13%)
Query: 123 ERFFHFFH---------NEVT-CKEMGIVFARGNNVKGL--WDFLKEMSRRGNGELVTTS 170
E H +H +EV+ C + ++F G + L W+ ++ RG G +T
Sbjct: 446 EDALHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWN---DILARGYGR--STY 500
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+I + + EA TF RMK+ PD Y +I+ C++GN +A + E+M
Sbjct: 501 AFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKM 560
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E P + Y LI K
Sbjct: 561 EKEAI--LPSIELYNSLIGGLFK 581
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
EGLV +A++ + M + + +V +N ++ LCRVG F A + M G PD
Sbjct: 407 EGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGV--TPDE 464
Query: 242 YTYTILISSYCKYG 255
+Y L+ K G
Sbjct: 465 VSYCTLLDLLFKMG 478
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI + G V+EA RM + P+ Y+Y+ +++ CR G KA + +M G
Sbjct: 365 LINGYCKNGQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRVG 424
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ +V T+ L+ C+ G
Sbjct: 425 IQ--SNVVTHNSLLKGLCRVG 443
>gi|341606837|gb|AEK83521.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606869|gb|AEK83537.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606977|gb|AEK83591.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606979|gb|AEK83592.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606981|gb|AEK83593.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606983|gb|AEK83594.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606985|gb|AEK83595.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606987|gb|AEK83596.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606989|gb|AEK83597.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606991|gb|AEK83598.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606993|gb|AEK83599.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606995|gb|AEK83600.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606997|gb|AEK83601.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606999|gb|AEK83602.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607001|gb|AEK83603.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607003|gb|AEK83604.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607005|gb|AEK83605.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607007|gb|AEK83606.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607009|gb|AEK83607.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607011|gb|AEK83608.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607013|gb|AEK83609.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607015|gb|AEK83610.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 207
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 111 RFNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 170
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 171 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 199
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM +G V + +I L +EG +NE A F M + +P+V Y V+I+
Sbjct: 3 QEMDEKGI--QVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 60
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G+ A LL +M GF+ PDV TY+++++ CK G
Sbjct: 61 KSGSVEDAIRLLHRMIDEGFK--PDVVTYSVVVNGLCKNG 98
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 34 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 91
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 92 NGLCKNGRVEEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 149
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 150 CTRDSYCYNALIDALTKHG 168
>gi|413938979|gb|AFW73530.1| ATP binding protein [Zea mays]
Length = 551
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 93/236 (39%), Gaps = 40/236 (16%)
Query: 45 IESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLKQRILK------------KEADNIAN 92
+E + ++L++ R + ++ R RTP + L KEA+ +
Sbjct: 182 VEGLLEILRAYTEKHLTHMRKLAKKRRVRMRTPPETDALNVLLDAFCKCGMVKEAEAVFG 241
Query: 93 NV-------------LVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMG 139
V L G R+P+K + + + H E F + E C G
Sbjct: 242 RVKRKLLGNAETYSTLFFGWCRARDPKKAMKVLEEMIQMKHTPESFTYVAAIESFCSA-G 300
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELV---TTSTVTCLIKVLGEEGLVNEALATFYRMK 196
+V + + L++F+ R G V T T + +I L + + E M+
Sbjct: 301 LV----SEARELFEFM-----RTEGLTVSSPTAKTYSIMIVALAKADRMEECFELLSDMR 351
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
C PDV Y +I +C VG + A +L++M GF PPD+ TY ++ C
Sbjct: 352 TCGCMPDVTTYKDLIEGMCLVGRLDAAYRVLDEMGRAGF--PPDIVTYNCFLNVLC 405
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M + A+ + ++ ++ L +M R G + +T LI+ + G ++ A M +
Sbjct: 330 MIVALAKADRMEECFELLSDM--RTCGCMPDVTTYKDLIEGMCLVGRLDAAYRVLDEMGR 387
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ YN +N LC + N + A L E+M C P V+TY +L+ + + G
Sbjct: 388 AGFPPDIVTYNCFLNVLCSLRNADDALELCERM--IEAHCEPSVHTYNMLMMMFFEMG 443
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 13/136 (9%)
Query: 122 VERFFHFFHNEVTCKEMGIVFARGNNVKGL---------WDFLKEMSRRGNGELVTTSTV 172
+E F + TC M V + ++G+ + L EM R G + T
Sbjct: 340 MEECFELLSDMRTCGCMPDVTTYKDLIEGMCLVGRLDAAYRVLDEMGRAGFPPDIVT--Y 397
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
C + VL ++AL RM + C P V+ YN+++ +G ++A + +M+
Sbjct: 398 NCFLNVLCSLRNADDALELCERMIEAHCEPSVHTYNMLMMMFFEMGEAHRALDIWLEMDK 457
Query: 233 PGFRCPPDVYTYTILI 248
G C + TY I+I
Sbjct: 458 RG--CQRAIDTYEIMI 471
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T + L+ + G+V EA A F R+K+ + + Y+ + CR + KA +LE
Sbjct: 217 TDALNVLLDAFCKCGMVKEAEAVFGRVKR-KLLGNAETYSTLFFGWCRARDPKKAMKVLE 275
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
+M + P+ +TY I S+C G+
Sbjct: 276 EM--IQMKHTPESFTYVAAIESFCSAGL 301
>gi|399107194|gb|AFP20361.1| At1g03560-like protein, partial [Capsella grandiflora]
gi|399107216|gb|AFP20372.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G ++
Sbjct: 118 NGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDE 177
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISS 250
A L ++ME C VYTYTILIS
Sbjct: 178 AMXLFKRMEEEE-GCDQTVYTYTILISG 204
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 25 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 84
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 85 FK--PDVVTYSVVVNGLCKNG 103
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 39 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 96
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 97 NGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 154
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 155 CTRDSYCYNALIDALTKHG 173
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+A + M + + + +++VI LC+ G N+ + E M G + P+V YT+LI
Sbjct: 4 VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLI 61
Query: 249 SSYCKYG 255
Y K G
Sbjct: 62 DGYAKSG 68
>gi|341605723|gb|AEK82964.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RFNGLAINSMFYSSLIXGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMXLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM +G V + +I L +EG +NE A F M + +P+V Y V+I+
Sbjct: 6 QEMDEKGI--QVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 63
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G+ A LL +M GF+ PDV TY+++++ CK G
Sbjct: 64 KSGSVEDAIRLLHRMIDEGFK--PDVVTYSVVVNGLCKNG 101
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIXGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59900
gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 907
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+ + V+ L++ L + G + EAL R+ F P+++ YN +I++LC+ F++A L
Sbjct: 331 SEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLF 390
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++M G R P DV TY+ILI +C+ G
Sbjct: 391 DRMGKIGLR-PNDV-TYSILIDMFCRRG 416
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G + T T L+ L GL+ +A+ F M ++ +P+ YNV+I C G+ +
Sbjct: 500 GKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMS 559
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
KA L++M G PD Y+Y LI C G +
Sbjct: 560 KAFEFLKEMTEKGI--VPDTYSYRPLIHGLCLTGQAS 594
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ F M RPDVY Y VI +LC + + ++A+ ++ ME G C ++ Y +L
Sbjct: 211 AMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATG--CDVNIVPYNVL 268
Query: 248 ISSYCK 253
I CK
Sbjct: 269 IDGLCK 274
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T+T LI+ +G + EA RM PD Y +IN LCR + KA
Sbjct: 782 GLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKA 841
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L M G R PD Y LI C G
Sbjct: 842 IELWNSMTEKGIR--PDRVAYNTLIHGCCVAG 871
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+EA F RM + RP+ Y+++I+ CR G + A L +M G + VY Y
Sbjct: 384 HEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLS--VYPYN 441
Query: 246 ILISSYCKYG 255
LI+ +CK+G
Sbjct: 442 SLINGHCKFG 451
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI + G ++ AL+ M + VY YN +IN C+ G+ + A + +M
Sbjct: 404 TYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEM 463
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ P V TYT L+ YC G
Sbjct: 464 --INKKLEPTVVTYTSLMGGYCSKG 486
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T L+ +G +N+AL ++ M P +Y + +++ L R G A L
Sbjct: 471 TVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLF 530
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M + P+ TY ++I YC+ G
Sbjct: 531 NEM--AEWNVKPNRVTYNVMIEGYCEEG 556
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 149 KGLWDFLKEMSRRG--NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
K + LKEM RG +++ TS +I + G EA + M C P+
Sbjct: 664 KLFFGLLKEMHDRGLKPDDVIYTS----MIDAKSKTGDFKEAFGIWDLMINEGCVPNEVT 719
Query: 207 YNVVINALCRVGNFNKARFLLEQME 231
Y VIN LC+ G N+A L +M+
Sbjct: 720 YTAVINGLCKAGFVNEAEVLCSKMQ 744
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I+ EEG +++A M + PD Y+Y +I+ LC G ++A+ ++
Sbjct: 544 TYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDG- 602
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L C + YT L+ +C+ G
Sbjct: 603 -LHKGNCELNEICYTGLLHGFCREG 626
>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
Length = 593
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ EGL +A F M+Q PDVYAYN ++ A R G A + M
Sbjct: 307 TYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLM 366
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQ 257
E G C PD +Y IL+ +Y + G+
Sbjct: 367 EHMG--CEPDRASYNILVDAYGRAGLH 391
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T T +I V G+ +L F MK C+P++ Y ++NA R G KA + E
Sbjct: 270 TETYTLMINVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFE 329
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
+M+ G PDVY Y L+ +Y + G+
Sbjct: 330 EMQQAGHE--PDVYAYNALMEAYSRAGL 355
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
FAR + + +EM + G+ V L++ GL A F M+ C
Sbjct: 314 AFAREGLCEKAEEVFEEMQQAGHEPDVYA--YNALMEAYSRAGLPQGASEIFSLMEHMGC 371
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD +YN++++A R G +A ++++ G R P + ++ +L+S++ K G
Sbjct: 372 EPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMR--PTMKSHMLLLSAHAKSG 424
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ G GL EA A F +KQ RP + ++ ++++A + GN + ++ Q+ G
Sbjct: 381 LVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSG 440
Query: 235 FRCPPDVYTYTILISSYCKYG 255
R PD + ++++Y + G
Sbjct: 441 LR--PDTFALNAMLNAYGRAG 459
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RPD+ YN++I+A + NKA + M L C P TY +L+ +YC G
Sbjct: 162 RPDIICYNLLIDAYGQKRQLNKAESIY--MALLEAHCVPTEDTYALLLRAYCNSG 214
>gi|53749325|gb|AAU90184.1| unkonwn protein [Oryza sativa Japonica Group]
gi|55168288|gb|AAV44154.1| unknown protein [Oryza sativa Japonica Group]
Length = 395
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 154 FLKEMSRRG--NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
L+EM +G G V S + + +EG ++ A A M++ C+PD +YN ++
Sbjct: 213 LLEEMKEKGIKVGREVHNSMIAGFCE---DEGDLDAAFAALDDMQKGGCKPDSVSYNTLV 269
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC++G + A L+E M P C PDV TY L C G
Sbjct: 270 GGLCKMGRWRDASELVEDM--PRRGCRPDVVTYRRLFDGICDAG 311
>gi|341606955|gb|AEK83580.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 206
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 111 RFNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 170
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 171 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 199
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM +G V + +I L +EG +NE A F M + +P+V Y V+I+
Sbjct: 3 QEMDEKGI--QVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 60
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G+ A LL +M GF+ PDV TY+++++ CK G
Sbjct: 61 KSGSVEDAIRLLHRMIDEGFK--PDVVTYSVVVNGLCKNG 98
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 34 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 91
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 92 NGLCKNGRVEEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 149
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 150 CTRDSYCYNALIDALTKHG 168
>gi|297834586|ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331015|gb|EFH61434.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 653
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T +I L + +N A F +M+ C+PD + YN++I+ +C+ G ++A L+
Sbjct: 173 STRLYNAVIDALVKSNSLNLAYVKFQQMRSDDCKPDRFTYNILIHGVCKKGVVDEAIRLV 232
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+QME G R P+V+TYTILI + G
Sbjct: 233 KQMEREGNR--PNVFTYTILIDGFLIAG 258
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 5/140 (3%)
Query: 118 FYHWVERFFHFFHNEVTCKE-MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLI 176
FY WV + + + K +G R + + LKE+ R +G +T + LI
Sbjct: 89 FYLWVSNTDPVYAKDQSLKSVLGNALFRKGPLLLSMELLKEI--RESGYRITDELMCVLI 146
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
G GL F ++ +P YN VI+AL + + N A +QM
Sbjct: 147 GSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLNLAYVKFQQMRSDD-- 204
Query: 237 CPPDVYTYTILISSYCKYGM 256
C PD +TY ILI CK G+
Sbjct: 205 CKPDRFTYNILIHGVCKKGV 224
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
R +K +D KEM G + + +T LI+ G ++ F MK+
Sbjct: 499 LCRAKEIKDAFDCFKEMLEWG----IKPNEITYNILIRSSCSTGDTGRSVKLFANMKESG 554
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
P++YAYN +I + C++ KA LL+ M G + PD +TY+ LI + + G ++
Sbjct: 555 LSPNLYAYNAIIQSFCKMKKVKKAEELLKTMLRIGLK--PDNFTYSTLIKALSESGRES 611
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
FL EM RG + L+T +T + G V + ++ + C PDV ++++IN
Sbjct: 441 FLTEMQDRGISPNLITFNT---FLSGYSAGGDVKKVHGVVEKLLEHGCNPDVITFSLIIN 497
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LCR A ++M G + P+ TY ILI S C G
Sbjct: 498 CLCRAKEIKDAFDCFKEMLEWGIK--PNEITYNILIRSSCSTG 538
>gi|242075674|ref|XP_002447773.1| hypothetical protein SORBIDRAFT_06g015370 [Sorghum bicolor]
gi|241938956|gb|EES12101.1| hypothetical protein SORBIDRAFT_06g015370 [Sorghum bicolor]
Length = 380
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W L M G T + T ++ ++G V EA M Q C PDV +Y+V+I
Sbjct: 169 WGVLDSMLEEGICP--TVRSYTAILHGYCKQGRVLEAERLVDTMIQVGCAPDVISYSVLI 226
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LCRVG F K +L + E G+ P+ TY I +S+ C+ G
Sbjct: 227 QGLCRVGEFGKVERILGESEAKGWT--PNAVTYNIYMSALCRMG 268
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 154 FLKEMSRR-----GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
FL E R+ G +T TV L L + + +EA++ ++ DV+ YN
Sbjct: 269 FLDEAFRQVDVMLSRGVSMTIETVNILFDCLCRDSMFSEAVSLLEYSEELNWNVDVFCYN 328
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+++ LC G+F + LL + G PD++++TI I S C+ G
Sbjct: 329 TLMSRLCDAGDFARVLKLLVDLVKKGIG--PDMFSFTIAIRSLCRAG 373
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L S +G TTS T L+K + + A F M C PD YN +I L
Sbjct: 100 LDAFSLLASGLGPTTSAFTALLKSIDAAPSESVYRAFFGTMAAMGCAPDAATYNCLIWML 159
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C ++A +L+ M G C P V +YT ++ YCK G
Sbjct: 160 CDSQRLDEAWGVLDSMLEEGI-C-PTVRSYTAILHGYCKQG 198
>gi|399107196|gb|AFP20362.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 116 RFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 175
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 176 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 204
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 25 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIBEG 84
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 85 FK--PDVVTYSVVVNGLCKNG 103
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 39 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIBEGFKPDVVTYSVVV 96
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 97 NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 154
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 155 CTRDSYCYNALIDALTKHG 173
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+A + M + + + +++VI LC+ G N+ + E M G + P+V YT+LI
Sbjct: 4 VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLI 61
Query: 249 SSYCKYG 255
Y K G
Sbjct: 62 DGYAKSG 68
>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 594
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
GE T LI + + +NEA+ F+ M C PD+ + +I+ C+ N NK
Sbjct: 317 GEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKV 376
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LLE+M GF PDV T+T LI +C+ G
Sbjct: 377 MHLLEEMAKMGF--VPDVVTWTTLIGGFCQAG 406
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T+T LI L +G V +A+ M++ R DVY Y V+IN LC+ G+ A L
Sbjct: 146 TVMTLTALINGLCVQGNVAQAVGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWL 205
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ME ++ P+V Y+ ++ CK G+
Sbjct: 206 RKMEERNWK--PNVVVYSTIMDGLCKDGL 232
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
++L++M R +V ST+ + L ++GLV+EAL M RP++ Y +I
Sbjct: 203 EWLRKMEERNWKPNVVVYSTI---MDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLI 259
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC G + + LL++M G R D+ T IL+ ++CK G
Sbjct: 260 QGLCNFGRWKETGSLLDEMIKMGMRL--DLQTLNILVDAFCKEG 301
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T+ +I L LV + M + P V +IN LC GN +A L++
Sbjct: 112 TITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTALINGLCVQGNVAQAVGLVD 171
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
ME R P DVYTY +LI+ CK G
Sbjct: 172 HME--KMRYPLDVYTYGVLINGLCKTG 196
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G++ T ++ L + L++EA++ M++ ++ Y+++++ +C G N A
Sbjct: 422 GQVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAA 481
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L LPG +VYTYTI+I CK G
Sbjct: 482 WELFSS--LPGKGLQINVYTYTIMIKGLCKQG 511
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ EMS G G T CLI+ L G E + M + R D+ N++++
Sbjct: 238 NLCSEMS--GKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVD 295
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
A C+ G +A+ ++ M L G PDV+TY LI YC
Sbjct: 296 AFCKEGKVMQAKSVIGFMILTGE--GPDVFTYNSLIHIYC 333
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G A+ +M++ +P+V Y+ +++ LC+ G ++A L +M G
Sbjct: 188 LINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKG 247
Query: 235 FRCPPDVYTYTILISSYCKYG 255
R P++ TY LI C +G
Sbjct: 248 VR--PNLVTYACLIQGLCNFG 266
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ + G +N A F + + +VY Y ++I LC+ G+ +KA LL ME G
Sbjct: 468 LLDGMCSAGKLNAAWELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEENG 527
Query: 235 FRCPPDVYTYTILI 248
C PD TY + +
Sbjct: 528 --CLPDNCTYNVFV 539
>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 529
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
E RR +G+LV V +I L ++ LVN+A ++ M R P V YN +I L
Sbjct: 138 EFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRICPSVVTYNTLICGL 197
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C + A LL +M L P VYT++ILI ++CK G
Sbjct: 198 CIMAQLKDAIGLLHKMILEDIN--PTVYTFSILIDAFCKEG 236
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
F+ EM RG + T L+ L + V++A+ ++K +P V YN++IN
Sbjct: 328 FIGEMHYRGQPPDIFT--YNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILING 385
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC+ G A + E + + G+ DVYTY +I +CK G+
Sbjct: 386 LCKSGRLKDAEKVFEDLLVKGYN--TDVYTYNAMIKGFCKKGL 426
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
+V+EA+ F M + PD+ YN +I+ LC+ G A + +M G PPD++T
Sbjct: 286 MVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQ--PPDIFT 343
Query: 244 YTILISSYCK 253
Y L+ + CK
Sbjct: 344 YNSLLDALCK 353
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G AL M PD++ YN +++ALC+ + +KA LL +++ G
Sbjct: 312 LIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQG 371
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ P V TY ILI+ CK G
Sbjct: 372 IQ--PSVCTYNILINGLCKSG 390
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+ T LI L + G + +A F + DVY YN +I C+ G F++ ++
Sbjct: 375 SVCTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMV 434
Query: 228 EQMELPGFRCPPDVYTYTILISS 250
+M+ G C PD I+I S
Sbjct: 435 SKMKDSG--CSPDAKNCEIIIRS 455
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LIK L +G +++AL ++ + + +Y +IN LC+VG A L ++
Sbjct: 84 TFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLINGLCKVGQTRAALEFLRRI 143
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ G PDV Y +I CK
Sbjct: 144 D--GKLVQPDVVMYNTIIDGLCK 164
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+ + +++R +VT +T+ C + ++ + + +A+ ++M P VY ++++I+A
Sbjct: 175 YFEMVAKRICPSVVTYNTLICGLCIMAQ---LKDAIGLLHKMILEDINPTVYTFSILIDA 231
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
C+ G +A+ + M + P++ TY L+ +
Sbjct: 232 FCKEGKMKEAKNVFAVMMKEDVK--PNIVTYNSLMDGH 267
>gi|341605701|gb|AEK82953.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G ++
Sbjct: 116 NGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALXKHGKVDE 175
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISS 250
A L ++ME C VYTYTILIS
Sbjct: 176 AMXLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM +G V + +I L +EG +NE A F M + +P+V Y V+I+
Sbjct: 6 QEMDEKGI--QVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 63
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G+ A LL +M GF+ PDV TY+++++ CK G
Sbjct: 64 KSGSVEDAIRLLHRMIDEGFK--PDVVTYSVVVNGLCKNG 101
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCXFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALXKHG 171
>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
Length = 543
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLV 185
H N +T + F + +++ + L EM RG+ ++VT S++ ++ L G +
Sbjct: 100 HCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSI---VQALCNTGNL 156
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+ A+ F + C PD +N++++ LC+ ++AR ++E+M G PDV TY
Sbjct: 157 SRAMQYFR--ESVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGI--VPDVVTYN 212
Query: 246 ILISSYCK-YGMQ 257
LI CK Y M+
Sbjct: 213 SLIDGLCKSYRME 225
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI ++ +++A + MK+ C P++ YNV+I+ LC G N+A LL +M
Sbjct: 280 TFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEM 339
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ G PD+ TY LI +C+
Sbjct: 340 DGRGI--LPDIITYNSLIGIFCR 360
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 15/141 (10%)
Query: 122 VERFFHFFHNEVTCKEMGIVF-------ARGNNVKGLWDFLKEMSRRGNGELVTTSTVT- 173
+ R +F V C ++F + N + ++EMS RG + VT
Sbjct: 156 LSRAMQYFRESVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERG----IVPDVVTY 211
Query: 174 -CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
LI L + + EA M + + RP++ YN +I C+ G A L+E+M
Sbjct: 212 NSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQ 271
Query: 233 PGFRCPPDVYTYTILISSYCK 253
G PDV T+ LIS +C+
Sbjct: 272 SGTH--PDVVTFNSLISGFCQ 290
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+EA A M P+++ +N ++ LC ++AR LL M G C P TY
Sbjct: 400 DEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVG--CDPAASTYE 457
Query: 246 ILISSYCKYG 255
+L++ CK G
Sbjct: 458 VLVTGLCKAG 467
>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
G+G L T T +IK L G + +A+ F +M + P V YN +IN GN
Sbjct: 400 EGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNV 459
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N A LL+ M+ G C PD +TY L+S + K+G
Sbjct: 460 NNAARLLDLMKENG--CEPDEWTYNELVSGFSKWG 492
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 19/223 (8%)
Query: 38 KTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRT----PLKQRILKKEADNIANN 93
K + I +V +S+ +FF+ I ++ ++H + R+++ A++
Sbjct: 74 KAHHVAEIVAVHKDTESVIQFFYW----ISKRPFYKHNMNCFISMLNRLVRDRVFAPADH 129
Query: 94 VLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWD 153
+ +L A RN ++ I + +F + + F + +C + I A+ V+G +
Sbjct: 130 IRILMIKACRNEEE----IRRVADFLNEISGM-GFGFSLYSCNTLLIQLAKFEMVEGARN 184
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
K+M G L+T +T LI +L ++G V EA ++ Q+ PDV+ Y +I
Sbjct: 185 LYKQMLNSGIQPSLLTFNT---LINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLIL 241
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CR N + A + ++M G C P+ TY+ LI+ C G
Sbjct: 242 GHCRNRNLDLAFGVFDRMVKEG--CDPNSVTYSTLINGLCNEG 282
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ T LI ++G V+ AL+ RM++ C P+V +YN VIN L + F++A + ++M
Sbjct: 515 SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKM 574
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P+V TYT LI C+ G
Sbjct: 575 VEQGLL--PNVITYTTLIDGLCRNG 597
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T T LI L G A F+ M++ +C P++Y Y+ +I LC+ G ++A
Sbjct: 578 GLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA 637
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL++ME G PD T+T LI + G
Sbjct: 638 EILLKEMERKGL--APDEVTFTSLIDGFVVLG 667
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L EG V+EAL M + P VY Y + I ALC + + +A L+ +M
Sbjct: 270 TYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARM 329
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G C P+V TYT LIS + G
Sbjct: 330 KKRG--CRPNVQTYTALISGLSRLG 352
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 5/141 (3%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A + +HW+E N T E+ G +++ ++M + G L T T
Sbjct: 392 ALKIFHWMEGHGSL-ANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMG--PLPTVVTYNT 448
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI +G VN A MK+ C PD + YN +++ + G A F ++M G
Sbjct: 449 LINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECG 508
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+ +YT LI + K G
Sbjct: 509 LN--PNPVSYTALIDGHSKDG 527
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D L+EM +G V T T+ I L EA+ RMK+ CRP+V Y +I+
Sbjct: 289 DMLEEMIEKGIEPTVYTYTLP--ITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALIS 346
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L R+G A L +M G P+ TY LI+ C G
Sbjct: 347 GLSRLGKLEVAIGLYHKMLKEGL--VPNTVTYNALINELCVGG 387
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T LI L G + AL F+ M+ + YN +I LC G+ KA
Sbjct: 368 GLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKA 427
Query: 224 RFLLEQMELPGFRCP-PDVYTYTILISSYCKYG 255
L E+M G P P V TY LI+ Y G
Sbjct: 428 MVLFEKMLKMG---PLPTVVTYNTLINGYLTKG 457
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L G + A+ +++M + P+ YN +IN LC G F+ A + M
Sbjct: 340 TYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWM 399
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G + TY +I C G
Sbjct: 400 E--GHGSLANTQTYNEIIKGLCLGG 422
>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
Length = 748
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L L + G V+ A + M + ++Y YN ++N LC+ GN ++A L++ M
Sbjct: 465 TYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDM 524
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E+ GF PD TYT L+ +YCK
Sbjct: 525 EVAGFH--PDAVTYTTLMDAYCK 545
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T++ + L + G V EA +M+ C PDV +Y+ VIN C+VG + L+E
Sbjct: 253 TASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIE 312
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M++ G + P+ YTY +I CK G
Sbjct: 313 EMQIKGLK--PNPYTYNGVILLLCKTG 337
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRR--GNGELVTT 169
++ F H+VE+ + + + + + +F + G+ D +++ + G L++
Sbjct: 158 LDVGVSFGHFVEQLIYTYKDWGSDPRVFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISV 217
Query: 170 STVTCLIKVLGEE-GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
+ I L E+ + AL F + + +YN++ ++LC++G +A LL
Sbjct: 218 DSCNLFISHLSEDLDGIKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLL 277
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
QMEL G C PDV +Y+ +I+ YC+ G
Sbjct: 278 QMELRG--CIPDVISYSTVINGYCQVG 302
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 155 LKEMSRRG---NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
L+EM G +G + TT LI + G V+ A F M++ + PD Y VI
Sbjct: 346 LREMISEGIAPDGVIYTT-----LIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVI 400
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G +A L +M R PD TYT LI YCK G
Sbjct: 401 CGLCQTGRVMEADKLFHEMVCK--RLEPDEVTYTALIDGYCKEG 442
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI +EG + EA + +M Q P++ Y + + LC+ G + A LL +M
Sbjct: 430 TYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEM 489
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G ++YTY L++ CK G
Sbjct: 490 CRKGLEL--NIYTYNSLVNGLCKAG 512
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L +M RG ++++ STV I + G + L M+ +P+ Y YN VI
Sbjct: 275 LLLQMELRGCIPDVISYSTV---INGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVIL 331
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G +A +L +M G PD YT LI +CK G
Sbjct: 332 LLCKTGKVAEAERVLREMISEGI--APDGVIYTTLIDGFCKLG 372
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I +L + G V EA M PD Y +I+ C++GN + A L ++M
Sbjct: 325 TYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEM 384
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ + PD TYT +I C+ G
Sbjct: 385 Q--KRKISPDFITYTAVICGLCQTG 407
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L EM R+G + T L+ L + G +++A+ M+ PD Y +++
Sbjct: 484 ELLHEMCRKGLE--LNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMD 541
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
A C+ +A LL QM P V T+ +L++ +C GM
Sbjct: 542 AYCKSREMVRAHELLRQM--LDRELQPTVVTFNVLMNGFCMSGM 583
>gi|341606831|gb|AEK83518.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606833|gb|AEK83519.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606835|gb|AEK83520.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606839|gb|AEK83522.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606841|gb|AEK83523.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606843|gb|AEK83524.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606845|gb|AEK83525.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606847|gb|AEK83526.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606849|gb|AEK83527.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606851|gb|AEK83528.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606853|gb|AEK83529.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606855|gb|AEK83530.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606857|gb|AEK83531.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606859|gb|AEK83532.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606861|gb|AEK83533.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606863|gb|AEK83534.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606865|gb|AEK83535.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606867|gb|AEK83536.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606871|gb|AEK83538.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606873|gb|AEK83539.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606875|gb|AEK83540.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606877|gb|AEK83541.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606879|gb|AEK83542.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606881|gb|AEK83543.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606883|gb|AEK83544.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606885|gb|AEK83545.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606887|gb|AEK83546.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606889|gb|AEK83547.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606891|gb|AEK83548.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606893|gb|AEK83549.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606895|gb|AEK83550.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606897|gb|AEK83551.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606899|gb|AEK83552.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606901|gb|AEK83553.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606903|gb|AEK83554.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606905|gb|AEK83555.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606907|gb|AEK83556.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606909|gb|AEK83557.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606911|gb|AEK83558.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606913|gb|AEK83559.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606915|gb|AEK83560.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606917|gb|AEK83561.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606919|gb|AEK83562.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606921|gb|AEK83563.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606923|gb|AEK83564.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606925|gb|AEK83565.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606927|gb|AEK83566.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606929|gb|AEK83567.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606931|gb|AEK83568.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606933|gb|AEK83569.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606935|gb|AEK83570.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606937|gb|AEK83571.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606939|gb|AEK83572.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606941|gb|AEK83573.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606943|gb|AEK83574.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606945|gb|AEK83575.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606947|gb|AEK83576.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606949|gb|AEK83577.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606951|gb|AEK83578.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606953|gb|AEK83579.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606957|gb|AEK83581.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606959|gb|AEK83582.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606961|gb|AEK83583.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606963|gb|AEK83584.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606965|gb|AEK83585.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606967|gb|AEK83586.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606969|gb|AEK83587.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606971|gb|AEK83588.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606973|gb|AEK83589.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606975|gb|AEK83590.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 208
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 111 RFNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 170
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 171 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 199
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM +G V + +I L +EG +NE A F M + +P+V Y V+I+
Sbjct: 3 QEMDEKGI--QVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 60
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G+ A LL +M GF+ PDV TY+++++ CK G
Sbjct: 61 KSGSVEDAIRLLHRMIDEGFK--PDVVTYSVVVNGLCKNG 98
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 34 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 91
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 92 NGLCKNGRVEEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 149
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 150 CTRDSYCYNALIDALTKHG 168
>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 456
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ VK + L EM RG V T T L+ + +++A A F +MK++ +
Sbjct: 272 LCKEGKVKEAKNLLAEMHYRGQPADVVT--YTSLLDGFCKNQNLDKATALFMKMKEWGIQ 329
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P+ Y Y +I+ LC+ G A+ L + + + G C DV TY ++I CK GM
Sbjct: 330 PNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKG--CCIDVCTYNVMIGGLCKEGM 382
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+DF EM+ RG V T T LI G + A + M P+VY Y ++I
Sbjct: 212 YDFYSEMNARGIFPNVITYTT--LIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILI 269
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ALC+ G +A+ LL +M G P DV TYT L+ +CK
Sbjct: 270 DALCKEGKVKEAKNLLAEMHYRGQ--PADVVTYTSLLDGFCK 309
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L ++ LVNEA + M P+V Y +I C G A LL +M L
Sbjct: 198 IIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKN 257
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+VYTY ILI + CK G
Sbjct: 258 IN--PNVYTYAILIDALCKEG 276
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L + G + +A F + C DV YNV+I LC+ G ++A + +M
Sbjct: 334 TYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKM 393
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E G C P+V T+ I+I S K
Sbjct: 394 EDNG--CIPNVVTFEIIIRSLFK 414
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+G +K +++ +G + T +I L +EG+++EALA +M+ C
Sbjct: 342 LCKGGRLKDAQKLFQDLLVKGC--CIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCI 399
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
P+V + ++I +L + +KA LL +M G
Sbjct: 400 PNVVTFEIIIRSLFKKDENDKAEKLLHEMIAKGL 433
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
+ +V++A++ F M P + + ++ L ++ +++ A L +QME+ G P++
Sbjct: 30 DNVVDDAISQFNGMLLMHHTPPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGIE--PNL 87
Query: 242 YTYTILISSYCKYGMQT 258
T ILI+ +C G +
Sbjct: 88 VTLNILINCFCHLGQMS 104
>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 472
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 168 TTSTVTCLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
T +++ LIK L +G V+ L F+ M + C PD Y Y +I+ LCR G ++A+ L
Sbjct: 155 TVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKL 214
Query: 227 LEQMELPGFRCPPDVYTYTILISSYC 252
+M C P V TYT LI+ C
Sbjct: 215 FTEMVEKD--CAPTVVTYTSLINGLC 238
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EM +RG + T LI L G ++EA F M + C P V Y +IN LC
Sbjct: 182 EMPKRGCDP--DSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCG 239
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N ++A +E+M+ G P+V+TY+ L+ CK G
Sbjct: 240 SKNVDEAMRYVEEMKGKGIE--PNVFTYSSLMDGLCKDG 276
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ +L EE +N A + M++ P V + NV+I ALCR A + E+P
Sbjct: 127 VLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFH-EMPK 185
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD YTY LIS C++G
Sbjct: 186 RGCDPDSYTYGTLISGLCRFG 206
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
NV +++EM +G G T + L+ L ++G +A+ F M CRP++
Sbjct: 242 NVDEAMRYVEEM--KGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVT 299
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
Y +I LC+ +A LL++M L G + PD Y +IS +C
Sbjct: 300 YTTLITGLCKEQKIQEAVELLDRMNLQGLK--PDAGLYGKVISGFC 343
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI L V+EA+ MK P+V+ Y+ +++ LC+ G +A L
Sbjct: 226 TVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELF 285
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
E M G C P++ TYT LI+ CK
Sbjct: 286 EMMMARG--CRPNMVTYTTLITGLCK 309
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G +++ + F M+R +VT +T LI L +E + EA+ RM +PD
Sbjct: 276 GRSLQAMELFEMMMARGCRPNMVTYTT---LITGLCKEQKIQEAVELLDRMNLQGLKPDA 332
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
Y VI+ C V F +A L++M L G P+ T+ I + +
Sbjct: 333 GLYGKVISGFCAVSKFREAANFLDEMILGGI--TPNRLTWNIHVKT 376
>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
Length = 796
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDVYAYNVVI 211
D E+S RG + T ++ L++ LG G ++ A F M+ + PDV+ Y +I
Sbjct: 161 DAFLELSARGASPSIKTCSI--LVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYTAMI 218
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
ALCR G + A +L ++ G + P V TY +L+ + CK G
Sbjct: 219 KALCRAGEIDAAFAMLAELRRSGIQ--PTVVTYNVLMDALCKSG 260
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLG--EEGLVNEALATFYRMKQFR 199
+GNN+K LK M G V +T I + G + ++EA+ M +
Sbjct: 467 LCQGNNMKEATKVLKAMVNSG----VELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRG 522
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+PD++ +N+ ++ C +G + LL+QM+ G + PD+ TY +I YCK
Sbjct: 523 FKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLK--PDIVTYGTIIDGYCK 574
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R + + L E+ R G V T V L+ L + G V EA RM + R
Sbjct: 220 ALCRAGEIDAAFAMLAELRRSGIQPTVVTYNV--LMDALCKSGRVEEAFRLKGRMVEGRV 277
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RP + + ++I+ L R F + +L++M+ GF P+ Y +I +C+ G
Sbjct: 278 RPSIVTFGILISGLARGQQFGEVGAVLQEMQ--GFGITPNEVIYNEMIGWHCRKG 330
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 157 EMSRRGNGELVTTSTV-------TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
+++R+ GE+ TV T +IK L G ++ A A +++ +P V YNV
Sbjct: 192 DVARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNV 251
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+++ALC+ G +A F L+ + G R P + T+ ILIS +
Sbjct: 252 LMDALCKSGRVEEA-FRLKGRMVEG-RVRPSIVTFGILISGLAR 293
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R N+ L M + NG T T L+ + GLV E A F +
Sbjct: 607 YGRNGNISDAIGILDTM--KYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIE 664
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V Y ++I C++G ++A ++M G PP+ TYT L+ +Y K G
Sbjct: 665 LGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGI--PPNKMTYTTLMFAYSKSG 716
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G V +T LI L + + EA M D YN++I C+ +
Sbjct: 450 GKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMD 509
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A L + M GF+ PD++T+ I + +YC G
Sbjct: 510 EAIQLRDDMIKRGFK--PDLFTFNIFLHTYCNLG 541
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G V E L +MK +PD+ Y +I+ C+ + +KA L ++ G R P+
Sbjct: 541 GKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLR--PNAV 598
Query: 243 TYTILISSYCKYG 255
Y LI Y + G
Sbjct: 599 IYNALIGGYGRNG 611
>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
Length = 645
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRCRP 202
R + +G L+++ RG + +++ + ++G V+EA+ + F C P
Sbjct: 158 RASGFRGAVGVLRDLHGRGCA--LDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEP 215
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
DV +YN V+ LC + + L+E+M G CPP++ T++ LI C+ G+
Sbjct: 216 DVVSYNAVLRGLCMARRWGHVQDLMEEMVAAG--CPPNIVTFSTLIGHLCRNGL 267
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I +EGL++EA+ M CRP+ +Y +V+ LC + A L+ QM
Sbjct: 394 TYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQM 453
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
G CPP+ T+ LI+ CK G+
Sbjct: 454 IQQG--CPPNPVTFNTLINFLCKKGL 477
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L + GLV+ + +M + C PDV Y VIN C+ G ++A LL M G
Sbjct: 363 LVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACG 422
Query: 235 FRCPPDVYTYTILISSYCK 253
C P+ +YTI++ C
Sbjct: 423 --CRPNTVSYTIVLKGLCS 439
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ N + L M ++G T + + L EG +N+ + F ++ R
Sbjct: 507 LGKAGNTDEALELLNVMVKKGMSP--NTIIYSSIASALSGEGRINKVIQMFENIQDTTVR 564
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D YN VI++LC+ G ++A L M G C P+ TYTILI G
Sbjct: 565 SDAVLYNAVISSLCKRGETDRAIEFLAYMVSSG--CVPNESTYTILIRGLASEG 616
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 18/125 (14%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC---LIKVLGEEGLVNEALAT 191
CKE + ARG L M G + V C L+K L EA
Sbjct: 298 CKEERLEVARG--------ILNRMPSYG-----LSPNVVCYNTLLKGLCSADRWEEAEGL 344
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
M C D +N++++ LC+ G ++ +LEQM G C PDV TYT +I+ +
Sbjct: 345 LAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHG--CMPDVITYTTVINGF 402
Query: 252 CKYGM 256
CK G+
Sbjct: 403 CKEGL 407
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
D ++EM G +VT ST LI L GL +M + C PDV Y +I
Sbjct: 238 DLMEEMVAAGCPPNIVTFST---LIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATII 294
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ +C+ AR +L +M P + P+V Y L+ C
Sbjct: 295 DGVCKEERLEVARGILNRM--PSYGLSPNVVCYNTLLKGLCS 334
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L ++GLV +A+ +M C PD+ +Y+ VI+ L + GN ++A LL M G
Sbjct: 468 LINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKG 527
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+ Y+ + S+ G
Sbjct: 528 MS--PNTIIYSSIASALSGEG 546
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+A +M Q C P+ +N +IN LC+ G +A LL+QM + G C PD+ +Y+
Sbjct: 445 DAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG--CSPDLISYST 502
Query: 247 LISSYCKYG 255
+I K G
Sbjct: 503 VIDGLGKAG 511
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L++ L G + +ALA M + C P Y+V + A CR F A +L +L G
Sbjct: 117 LVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGVLR--DLHG 174
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C DV +++ + C G
Sbjct: 175 RGCALDVGNCNLVLQAVCDQG 195
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ LK+M G + +L++ STV I LG+ G +EAL M + P+ Y+ +
Sbjct: 483 ELLKQMLVNGCSPDLISYSTV---IDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIA 539
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+AL G NK + E ++ R D Y +ISS CK G
Sbjct: 540 SALSGEGRINKVIQMFENIQDTTVR--SDAVLYNAVISSLCKRG 581
>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
Length = 667
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R K + L+EM +G V T T +I +EG +++AL MK C+P+
Sbjct: 123 RERKAKEAEEMLQEMFEKGLAPCVVTCTA--VINAYCKEGRMSDALRVLELMKLRGCKPN 180
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V+ YN ++ C G +KA LL +M G PD TY +LI C G
Sbjct: 181 VWTYNALVQGFCNEGKVHKAMTLLNKMRACGVN--PDAVTYNLLIRGQCIDG 230
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
G+G + T LI L ++G ++A + F ++ +P+ +N +IN LC+ G
Sbjct: 243 EGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKA 302
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ A LE+M G C PD YTY+ I CK
Sbjct: 303 DIAWKFLEKMVSAG--CTPDTYTYSSFIEHLCK 333
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L++ EG V++A+ +M+ PD YN++I C G+ A LL M
Sbjct: 183 TYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLM 242
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G D YTY LI++ CK G
Sbjct: 243 EGDGL--IADQYTYNALINALCKDG 265
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RPD Y +N +I CR + AR L ++M L GF DV +Y LI C+ G
Sbjct: 7 RPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGF--AQDVVSYATLIEGLCEAG 59
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R N V D +M RG + V + LI+ L E G ++EA+ F M Q
Sbjct: 20 YCRTNQVDVARDLFDKMPLRGFAQDVVSYAT--LIEGLCEAGRIDEAVELFGEMDQ---- 73
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD++ Y ++ LC + +L +M+ G+R P Y ++ C+
Sbjct: 74 PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWR--PSTRAYAAVVDFRCR 123
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
GEEGL+ RMK+ RP AY V++ CR +A +L++M G P
Sbjct: 92 GEEGLL-----MLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGL--AP 144
Query: 240 DVYTYTILISSYCKYG 255
V T T +I++YCK G
Sbjct: 145 CVVTCTAVINAYCKEG 160
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
+G + A M+ D Y YN +INALC+ G ++A L + +E G + P+
Sbjct: 229 DGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIK--PNA 286
Query: 242 YTYTILISSYCKYG 255
T+ LI+ CK G
Sbjct: 287 VTFNSLINGLCKSG 300
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W FL++M G T T + I+ L + E L+ M Q +P Y +VI
Sbjct: 306 WKFLEKMVSAGCTP--DTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVI 363
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ L + N+ +M G C PDV TYT + +YC G
Sbjct: 364 HKLLKERNYGLVARTWGEMVSSG--CNPDVVTYTTSMRAYCIEG 405
>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
Length = 612
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
++ + +EM RG T +T LI +EG V L + M + D+ AY
Sbjct: 328 IQDAMEMFEEMCERGLNP--NTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAY 385
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N ++N CRV + A ++E+M G + PD TYT LI CK G
Sbjct: 386 NALVNGFCRVRDMKAANDIVEEMRKDGLK--PDKVTYTTLIDGCCKEG 431
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T T +I + G V M+ P + YNVV+N C +G A LL
Sbjct: 488 TTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNA 547
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M G CP D+ TY IL+ +CK+G
Sbjct: 548 MLNIGV-CPNDI-TYNILLDGHCKHG 571
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R + + EM RRG T T L+ + + +N A A M + PD
Sbjct: 254 RSGKLASARNVFDEMLRRGVQP--TVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPD 311
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
VY Y I LC+ G A + E+M G P+ T LI ++CK G
Sbjct: 312 VYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLN--PNTVVLTTLIDAHCKEG 361
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
+G D EM + + E V VT LI L + G +A M + +PD
Sbjct: 430 EGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTT 489
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +VI+A C+ G+ L++M+ G P + TY ++++ +C G
Sbjct: 490 YTMVIDAFCKNGDVKTGFKHLKEMQNKGKN--PGIVTYNVVMNGFCSLG 536
>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
Length = 1001
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+ CKE I A D + M +RG V T T L E ++EA+
Sbjct: 716 DALCKEGMIAIAH--------DVVDMMIKRGVEPDVVTYTALMDGHCLRSE--MDEAVKV 765
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F M C P+V +YN++IN C++ +KA LLEQM L G D TY LI
Sbjct: 766 FDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGL--IADTVTYNTLIHGL 823
Query: 252 CKYG 255
C G
Sbjct: 824 CHVG 827
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
+G++ T L+ L + + EA+ ++ D+ YN+ I+ +CR G
Sbjct: 841 ASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELE 900
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
AR L + G + PDV TY I+I CK G+
Sbjct: 901 AARDLFSNLSSKGLQ--PDVRTYNIMIHGLCKRGL 933
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 154 FLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
EM RG +LVT T++ L + +++A+A ++ PD+ Y +++
Sbjct: 347 LFHEMVARGQIPDLVTYRTLS---DYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILD 403
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+CR G AR L + G + P+V+TY I+I CK G+
Sbjct: 404 GMCRAGELEDARDLFSNLSSKGLQ--PNVWTYNIMIHGLCKQGL 445
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L++MS +G + T T LI L G + A+A F+ M PD+ Y ++++
Sbjct: 800 LLEQMSLQG--LIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDY 857
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ + +A LL+ +E G D+ Y I I C+ G
Sbjct: 858 LCKNHHLAEAMVLLKAIE--GSNLDADILVYNIAIDGMCRAG 897
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 149 KGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
K ++ F +EMSR+ EL T T LI L G + +A++ F+ M PD+ Y
Sbjct: 308 KAMYLF-EEMSRQ---ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTY 363
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ + LC+ + +KA LL+ +E G PD+ YT ++ C+ G
Sbjct: 364 RTLSDYLCKNRHLDKAMALLKAIE--GSNWDPDIQIYTTILDGMCRAG 409
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G +T T LI+ L EG + EAL F +M +P+V Y +IN LC+ +A
Sbjct: 110 GHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEA 169
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ +M G P++ TY LI CK
Sbjct: 170 FNIFSEMITKGIS--PNIVTYNSLIHGLCK 197
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+ A+ F M C +V +YN +IN C++ + +KA +L E+M P+ TY
Sbjct: 271 VDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELT--PNTVTY 328
Query: 245 TILISSYCKYG 255
LI C G
Sbjct: 329 NTLIHGLCHVG 339
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 50/157 (31%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL----------------- 184
F R N + L+EM RG V ST T L+ +L ++GL
Sbjct: 475 FLRNNEALRTIELLEEMLARGFS--VDVSTTTLLVGMLSDDGLDQSVKQILCKPSSSSRP 532
Query: 185 -----------------------------VNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+++AL++F RM P + ++ ++
Sbjct: 533 SGTQMRSLPPLFLSSSHNSLHSRSPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIA 592
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
++ +++ L QM+ F PPDVYT ILI+S+C
Sbjct: 593 KMKHYSTVLSLSTQMD--SFGIPPDVYTLNILINSFC 627
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T T L+ + + + L+ +M F PDVY N++IN+ C + A +L
Sbjct: 580 STVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVL 639
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++ GF+ PDV TY L++ CK
Sbjct: 640 AKLLKLGFQ--PDVVTYGTLMNGLCK 663
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EAL+TF RM + P +N ++ ++ + + + L QM+ F PPDVYT
Sbjct: 26 LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMD--SFGIPPDVYTL 83
Query: 245 TILISSYC 252
I+I+S C
Sbjct: 84 AIVINSLC 91
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G T LI L ++ V EA F M P++ YN +I+ LC++ +
Sbjct: 143 GEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWK 202
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L+ +M + PDV+T ++ + CK GM
Sbjct: 203 HVTTLMNEM--VDSKIMPDVFTLNTVVDALCKEGM 235
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ L +EG++ A M + PDV Y +++ C ++A + + M G
Sbjct: 714 VVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG 773
Query: 235 FRCPPDVYTYTILISSYCK 253
C P+V +Y ILI+ YC+
Sbjct: 774 --CVPNVRSYNILINGYCQ 790
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+ +I L V+ A + ++ + +PD + +I LC G +A L ++M
Sbjct: 82 TLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKM 141
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
GF+ P+V TY LI+ CK
Sbjct: 142 IGEGFQ--PNVVTYGTLINGLCK 162
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++A+ F M + P+ YN +I+ LC VG A L +M G PD+ TY
Sbjct: 306 VDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQ--IPDLVTY 363
Query: 245 TILISSYCK 253
L CK
Sbjct: 364 RTLSDYLCK 372
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ D +S +G V T + +I L ++GL+ EA F M + C
Sbjct: 405 MCRAGELEDARDLFSNLSSKGLQPNVWTYNI--MIHGLCKQGLLAEASKLFSEMNKNGCS 462
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
P+ YN++ R + LLE+M GF DV T T+L+ G+
Sbjct: 463 PNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSV--DVSTTTLLVGMLSDDGLD 516
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
M + PDV+ N V++ALC+ G +A +++ M G P+V TY L+ +C
Sbjct: 210 EMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVE--PNVVTYNALMDGHC 266
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M F PDVY +VIN+LC + + A L ++ G + PD T+T LI C
Sbjct: 70 QMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQ--PDATTFTTLIRGLCV 127
Query: 254 YG 255
G
Sbjct: 128 EG 129
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T ++ + G + +A F + +P+V+ YN++I+ LC+ G +A L +M
Sbjct: 399 TTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNK 458
Query: 233 PGFRCPPDVYTYTILISSYCK 253
G C P+ TY ++ + +
Sbjct: 459 NG--CSPNDCTYNLITRGFLR 477
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD++ YN +I+ALC + + LL +M + P+V ++ ++ + CK GM
Sbjct: 671 PDIFTYNSLIHALCNLCEWKHVTTLLNEM--VNSKIMPNVVVFSTVVDALCKEGM 723
>gi|308044519|ref|NP_001183314.1| uncharacterized protein LOC100501715 [Zea mays]
gi|238010730|gb|ACR36400.1| unknown [Zea mays]
Length = 320
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 148 VKGLWDFLK-----EMSRRGNGELVTTSTV---TCLIKVLGEEGLVNEALATFYRMKQ-- 197
+KGL D + +M R EL T V LIK L E EAL M
Sbjct: 71 IKGLCDGKRTGDAMDMVFRRMPELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTANG 130
Query: 198 -FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ C PDV +YN+VI+ L + G +KA FL +M GF PPD+ TY+ +I CK
Sbjct: 131 GYNCSPDVVSYNIVIDGLFKEGEVDKAYFLFHEMPGQGF--PPDLVTYSSVIDGLCK 185
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 175 LIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL- 232
LIK L + +A+ F RM + PDV++YN +I LC +A LL M
Sbjct: 70 LIKGLCDGKRTGDAMDMVFRRMPELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTAN 129
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G+ C PDV +Y I+I K G
Sbjct: 130 GGYNCSPDVVSYNIVIDGLFKEG 152
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG V++A F+ M PD+ Y+ VI+ LC+ +KA L+QM G
Sbjct: 144 VIDGLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKG 203
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+ Y LI YC G
Sbjct: 204 VM--PNTRPYNSLIHGYCSLG 222
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
+LVT S+V I L + +++A A+ +M P+ YN +I+ C +G +A
Sbjct: 172 DLVTYSSV---IDGLCKAQAMDKAEASLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAV 228
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL++M G + +V TY +LI YCK G
Sbjct: 229 RLLKKMSGGGLQL--NVVTYNMLIDYYCKIG 257
>gi|341605713|gb|AEK82959.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605715|gb|AEK82960.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605717|gb|AEK82961.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605719|gb|AEK82962.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605755|gb|AEK82980.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605757|gb|AEK82981.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605759|gb|AEK82982.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605827|gb|AEK83016.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605829|gb|AEK83017.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 82
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 83 FK--PDVVTYSVVVNGLCKNG 101
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 18 HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLIDGYAKSG 66
>gi|399107214|gb|AFP20371.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G ++
Sbjct: 118 NGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDE 177
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISS 250
A L ++ME C VYTYTILIS
Sbjct: 178 AMXLFKRMEEEE-GCDQTVYTYTILISG 204
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 25 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIBEG 84
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 85 FK--PDVVTYSVVVNGLCKNG 103
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 39 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIBEGFKPDVVTYSVVV 96
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 97 NGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 154
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 155 CTRDSYCYNALIDALTKHG 173
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+A + M + + + +++VI LC+ G N+ + E M G + P+V YT+LI
Sbjct: 4 VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLI 61
Query: 249 SSYCKYG 255
Y K G
Sbjct: 62 DGYAKSG 68
>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Vitis vinifera]
Length = 582
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+EM RG L T +I+ + +EG+V A + C+PDV +YN+++ A
Sbjct: 229 LLEEMLARG--LLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRA 286
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
G +++ L+ +M G C P+ TY+ILISS C++G
Sbjct: 287 FLNQGKWDEGEKLVAEMFSRG--CEPNKVTYSILISSLCRFG 326
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L +EG ++ A+ M C PD+ YN ++ ALC+ GN N+A + + L G
Sbjct: 353 LISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNK--LRG 410
Query: 235 FRCPPDVYTYTILISSYCKYG 255
CPP+V +Y +IS+ G
Sbjct: 411 MGCPPNVSSYNTMISALWSCG 431
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 149 KGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
+G WD + EM RG T ++ LI L G ++EA++ M + PD
Sbjct: 290 QGKWDEGEKLVAEMFSRGCEPNKVTYSI--LISSLCRFGRIDEAISVLKVMIEKELTPDT 347
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y+Y+ +I+ALC+ G + A +++ M G C PD+ Y ++++ CK G
Sbjct: 348 YSYDPLISALCKEGRLDLAIGIMDYMISNG--CLPDIVNYNTILAALCKNG 396
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI+ EG +NEA+ M PD+Y YN +I +C+ G +A L+
Sbjct: 206 TVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELI 265
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G C PDV +Y IL+ ++ G
Sbjct: 266 TSLTSKG--CKPDVISYNILLRAFLNQG 291
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE R + G+ D++ NG L ++ L + G N+AL F +
Sbjct: 358 CKE-----GRLDLAIGIMDYMIS-----NGCLPDIVNYNTILAALCKNGNANQALEIFNK 407
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
++ C P+V +YN +I+AL G+ ++A ++ M G PD TY LIS C+
Sbjct: 408 LRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVD--PDEITYNSLISCLCRD 465
Query: 255 GM 256
G+
Sbjct: 466 GL 467
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
E+ S ++CL + +GLV EA+ M+Q RP V +YN+V+ LC+V + A
Sbjct: 452 EITYNSLISCLCR----DGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAI 507
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
+ +M G C P+ TY +LI G +T
Sbjct: 508 GMFAEMIEKG--CRPNETTYILLIEGIGFAGWRT 539
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
PDV+AYN VI+ C+V A +L +M+ GF PD+ TY I+I S C
Sbjct: 134 EPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFL--PDIVTYNIMIGSLC 183
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + N ++ L M RG L T +I L + AL ++ C
Sbjct: 147 FCKVNRIEAATQVLNRMKARGF--LPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCM 204
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P V Y ++I A G N+A LLE+M G PD+YTY +I CK GM
Sbjct: 205 PTVITYTILIEATIVEGGINEAMKLLEEMLARGLL--PDMYTYNAIIRGMCKEGM 257
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
RG G S+ +I L G + AL M PD YN +I+ LCR G
Sbjct: 409 RGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLV 468
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+A LL+ ME GFR P V +Y I++ CK
Sbjct: 469 EEAIGLLDDMEQSGFR--PTVISYNIVLLGLCK 499
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM---E 231
L++ +G +E M C P+ Y+++I++LCR G ++A +L+ M E
Sbjct: 283 LLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKE 342
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
L PD Y+Y LIS+ CK G
Sbjct: 343 L-----TPDTYSYDPLISALCKEG 361
>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 685
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
V L D ++M + +G T LI LG G V EA+ F ++ C+PD+ +Y
Sbjct: 492 VSHLHDLYEKM--KQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISY 549
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N +IN L + G+ ++A +M+ G PDV TY+ LI + K
Sbjct: 550 NSLINCLGKNGDVDEAHMRFLEMQDKGLN--PDVVTYSTLIECFGK 593
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I++ G+ G E+LA F M C P++ AYN +I AL + G +KA L M
Sbjct: 306 TYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNM 365
Query: 231 ELPGFRCPPDVYTYTILIS 249
C P+ +TY+I+++
Sbjct: 366 --IKNNCRPNEFTYSIILN 382
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFR 199
RG + L ++ +G ++T T+ ++ LG+ V+ + +MKQ
Sbjct: 451 LCRGGKTVEAIELLSKVHEKG----ISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDG 506
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD++ YN++I++L RVG +A + E++E C PD+ +Y LI+ K G
Sbjct: 507 PFPDIFTYNILISSLGRVGKVKEAVEVFEELE--SSDCKPDIISYNSLINCLGKNG 560
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI LG+ G V+EA F M+ PDV Y+ +I + AR L ++M G
Sbjct: 552 LINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQG 611
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P++ TY IL+ + G
Sbjct: 612 --CCPNIVTYNILLDCLERAG 630
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
M NG + L+ L ++ ++ + F MK C PD Y Y ++I ++
Sbjct: 258 MEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKM 317
Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
G ++ L E+M G C P++ Y +I + K GM
Sbjct: 318 GRAEESLALFEEMLTKG--CTPNLIAYNTMIQALSKSGM 354
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 157 EMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
EM +G N ++VT ST LI+ G+ V A + F RM C P++ YN++++ L
Sbjct: 571 EMQDKGLNPDVVTYST---LIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLE 627
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
R G + L ++ G PD TY IL
Sbjct: 628 RAGRTAETVDLYAKLREQGL--TPDSITYAIL 657
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
+I+ L + G+V++A+ F M + CRP+ + Y++++N L G + +LE
Sbjct: 345 MIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLE 398
>gi|341605707|gb|AEK82956.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G ++
Sbjct: 116 NGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDE 175
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISS 250
A L ++ME C VYTYTILIS
Sbjct: 176 AMXLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM +G V + +I L +EG +NE A F M + +P+V Y V+I+
Sbjct: 6 QEMDEKGI--QVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 63
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G+ A LL +M GF+ PDV TY+++++ CK G
Sbjct: 64 KSGSVEDAIRLLHRMIBEGFK--PDVVTYSVVVNGLCKNG 101
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIBEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
Length = 722
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
VK D EM G + T T +I L + G V A F M+ +PDV Y
Sbjct: 324 VKKADDLQLEMENEGI--MPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITY 381
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N ++N C+ G+ +A L + G P V TY ILI YC+ G
Sbjct: 382 NSLLNGYCKAGSLKEALLLFGDLRHAGL--APTVLTYNILIDGYCRLG 427
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ + G + EAL F ++ P V YN++I+ CR+G+ +AR L E+M
Sbjct: 380 TYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEM 439
Query: 231 ELPGFRCPPDVYTYTILI 248
G C PDV TYTIL+
Sbjct: 440 VEQG--CLPDVCTYTILM 455
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 188 ALATFYRMKQFR----CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
A+A +R+++ D YN++I+ LC+ GN N A+ L +M G + PD T
Sbjct: 498 AIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQ--PDCIT 555
Query: 244 YTILISSYCKYGM 256
YT LI ++C+ G+
Sbjct: 556 YTCLIHAHCERGL 568
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N+ K L +M NG T TCLI E GL+ EA F M P
Sbjct: 535 NDAKDL-----QMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAV 589
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y V I+A CR GN A +M G P+ TY +LI + C+ G
Sbjct: 590 TYTVFIHAYCRRGNLYSAYGWFRKMLEEGVE--PNEITYNVLIHALCRTG 637
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
F K+M G T TV I G + A F +M + P+ YNV+I+A
Sbjct: 575 FFKDMISDGLAPSAVTYTV--FIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHA 632
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LCR G A +M G P+ YTYT+LI CK G
Sbjct: 633 LCRTGRTQLAYRHFHEMLERGL--VPNKYTYTLLIDGNCKEG 672
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 165 ELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
E +++ TVT LI L + G +N+A +M +PD Y +I+A C G +
Sbjct: 512 EGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLRE 571
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
AR + M G P TYT+ I +YC+ G
Sbjct: 572 ARKFFKDMISDGL--APSAVTYTVFIHAYCRRG 602
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++VL + ++ A M Q P + YN ++++ + G +K LL++ME G
Sbjct: 208 VLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRG 267
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+ T+ ++I+ + G
Sbjct: 268 SGCLPNDVTHNVVITGLARKG 288
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALAT--FYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G L T T L+K G + A+A F M +PD +AYN I A +G
Sbjct: 443 GCLPDVCTYTILMK--GSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIA 500
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
KA L E M L G D TY ILI CK G
Sbjct: 501 KAFRLREVMMLEGIS--SDTVTYNILIDGLCKTG 532
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 51/136 (37%), Gaps = 36/136 (26%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA------------------------- 188
LKEM RG+G L T +I L +G + EA
Sbjct: 259 LLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKASSFTYNPLITGL 318
Query: 189 LATFY---------RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
LA + M+ P V YN +I+ L + G A+ +M G + P
Sbjct: 319 LAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQ--P 376
Query: 240 DVYTYTILISSYCKYG 255
DV TY L++ YCK G
Sbjct: 377 DVITYNSLLNGYCKAG 392
>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62680, mitochondrial; Flags: Precursor
gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVT-TSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + V+ +EMS+RG LV+ T T LI+ + G V++A F +M F
Sbjct: 340 FCKAKRVEDGMKLFREMSQRG---LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI 396
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD++ YN+++ LC G KA + E M+ D+ TYT +I CK G
Sbjct: 397 SPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM--DLDIVTYTTVIRGMCKTG 449
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+ L+ V++A++ +M + +PD+ AYN +I++LC+ N A +++
Sbjct: 157 TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI 216
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
E G R P+V TYT L++ C
Sbjct: 217 ERKGIR--PNVVTYTALVNGLC 236
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + +V +F +M G + T + L+ L + G + +AL F M++
Sbjct: 375 FFQAGDVDKAQEFFSQMDFFGISPDIWTYNI--LLGGLCDNGELEKALVIFEDMQKREMD 432
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
D+ Y VI +C+ G +A L + L G + PD+ TYT ++S C G+
Sbjct: 433 LDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLK--PDIVTYTTMMSGLCTKGL 485
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ + G V EA F M + PD+ Y+ +IN LC ++A + + M
Sbjct: 262 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 321
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C DV +Y LI+ +CK
Sbjct: 322 VSKG--CLADVVSYNTLINGFCK 342
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 105 PQKVTLGI--------NKATEFYHWVERFFHFFHNEVTCKEMGIV--FARGNNVKGLWDF 154
P +VT+G N+ ++ V++ + I+ + V +DF
Sbjct: 153 PDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDF 212
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
KE+ R+G V T T L+ L ++A M + + P+V Y+ +++A
Sbjct: 213 FKEIERKGIRPNVVTYTA--LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF 270
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ G +A+ L E+M PD+ TY+ LI+ C
Sbjct: 271 VKNGKVLEAKELFEEM--VRMSIDPDIVTYSSLINGLC 306
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 60/161 (37%), Gaps = 41/161 (25%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N +T + F + V + +EM R + ++VT S+ LI L ++EA
Sbjct: 259 NVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSS---LINGLCLHDRIDEAN 315
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCR--------------------------------- 216
F M C DV +YN +IN C+
Sbjct: 316 QMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 375
Query: 217 --VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
G+ +KA+ QM+ G PD++TY IL+ C G
Sbjct: 376 FQAGDVDKAQEFFSQMDFFGI--SPDIWTYNILLGGLCDNG 414
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L + VN+A F +++ RP+V Y ++N LC ++ A LL M
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKK- 254
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ P+V TY+ L+ ++ K G
Sbjct: 255 -KITPNVITYSALLDAFVKNG 274
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+N+A+ F M + R P + +N +++A+ ++ ++ L ++ME+ G R D+YT+
Sbjct: 66 LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIR--NDLYTF 123
Query: 245 TILISSYC 252
I+I+ +C
Sbjct: 124 NIVINCFC 131
>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g74580
gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 763
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
KA E ++ + + F H T + + + + + L +M R G +
Sbjct: 22 KALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDM-RENVGNHMLEGVYV 80
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
+K G +G V EA+ F RM + C P V++YN +++ L G F++A + +M
Sbjct: 81 GAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDR 140
Query: 234 GFRCPPDVYTYTILISSYCK 253
G PDVY++TI + S+CK
Sbjct: 141 GI--TPDVYSFTIRMKSFCK 158
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V + +VK L ++ +RG L T I+ L + G ++ A+ + +
Sbjct: 225 VLCKKGDVKECEKLLDKVIKRG--VLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGP 282
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+PDV YN +I LC+ F +A L +M G PD YTY LI+ YCK GM
Sbjct: 283 KPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLE--PDSYTYNTLIAGYCKGGM 336
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LIK L +G++ EA M + P+V +N+++N LC++G + A L++ M G
Sbjct: 397 LIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKG 456
Query: 235 FRCPPDVYTYTILISSY 251
+ PD++T+ ILI Y
Sbjct: 457 YF--PDIFTFNILIHGY 471
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+ + T+ M + C P+++ +N+++ +LCR ++A LLE+M+ PD T+
Sbjct: 514 DVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVN--PDAVTFGT 571
Query: 247 LISSYCKYG 255
LI +CK G
Sbjct: 572 LIDGFCKNG 580
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + T LI L EG N ALA F +P+V YN +I L G +
Sbjct: 350 NGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILE 409
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A L +M G P+V T+ IL++ CK G
Sbjct: 410 AAQLANEMSEKGL--IPEVQTFNILVNGLCKMG 440
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-FRCRPDVYAYNVVI 211
L+EM + N + VT T LI + G ++ A F +M++ ++ YN++I
Sbjct: 553 LLEEMKNKSVNPDAVTFGT---LIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIII 609
Query: 212 NALCRVGNFNKARFLLEQMELPGFRC-PPDVYTYTILISSYCKYG 255
+A N A L ++M RC PD YTY +++ +CK G
Sbjct: 610 HAFTEKLNVTMAEKLFQEMV---DRCLGPDGYTYRLMVDGFCKTG 651
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
F + ++ G + ++M V++ST T +I E+ V A F M
Sbjct: 576 FCKNGDLDGAYTLFRKMEEAYK---VSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRC 632
Query: 200 CRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYC 252
PD Y Y ++++ C+ GN N +FLLE ME GF P + T +I+ C
Sbjct: 633 LGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMME-NGF--IPSLTTLGRVINCLC 683
Score = 37.0 bits (84), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T + ++ VL + G ++A + RM+ PDVY++ + + + C+ + A LL
Sbjct: 110 TVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLL 169
Query: 228 EQMELPGFRCPPDVYTYTILISSY 251
M G C +V Y ++ +
Sbjct: 170 NNMSSQG--CEMNVVAYCTVVGGF 191
>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
gi|194702156|gb|ACF85162.1| unknown [Zea mays]
gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
Length = 567
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E TCK G K L EM +G + T V ++ + +EG V +A+
Sbjct: 209 EATCKRSGY--------KQAMKLLDEMHDKGCAPDIVTYNV--VLNGICQEGRVEDAMEF 258
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+ + C P+ +YN+V+ L + A L+E+M G CPP+V T+ +LIS
Sbjct: 259 LKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKG--CPPNVVTFNMLISFL 316
Query: 252 CKYGM 256
C+ G+
Sbjct: 317 CRRGL 321
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
++EM+ +G V T + LI L GLV A+ +M Q+ C P+ +YN +++A
Sbjct: 293 LMEEMAHKGCPPNVVTFNM--LISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHA 350
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ +KA +E M G C PD+ +Y L+++ C+ G
Sbjct: 351 FCKQKKIHKAMEFVELMVSRG--CYPDIVSYNTLLTALCRNG 390
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI+ L G + ALA M + C PDV Y +++ A C+ + +A LL++M
Sbjct: 168 TYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEM 227
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C PD+ TY ++++ C+ G
Sbjct: 228 HDKG--CAPDIVTYNVVLNGICQEG 250
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F + + +F++ M RG ++V+ +T L+ L G V+ A+ +++K
Sbjct: 350 AFCKQKKIHKAMEFVELMVSRGCYPDIVSYNT---LLTALCRNGEVDVAIELLHQLKDKG 406
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C P + +YN VI+ L + G +A LL++M G + PD+ TY+ + S C+
Sbjct: 407 CSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQ--PDIITYSTIASGLCR 458
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
RG L L++M RRG V T T+ L++ + +A+ M C P
Sbjct: 178 GRGRTSNALA-VLEDMFRRGCLPDVVTYTI--LLEATCKRSGYKQAMKLLDEMHDKGCAP 234
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
D+ YNVV+N +C+ G A L+ LP + C P+ +Y I++
Sbjct: 235 DIVTYNVVLNGICQEGRVEDAMEFLKN--LPSYGCEPNTVSYNIVL 278
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR--CPPDVYTYTILISSYCK 253
PD Y YN +I LC G + A +LE M FR C PDV TYTIL+ + CK
Sbjct: 164 PDAYTYNTLIRGLCGRGRTSNALAVLEDM----FRRGCLPDVVTYTILLEATCK 213
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ K + L EM+ +G +++T ST+ L E + EA+ TF +++
Sbjct: 421 LTKAGKTKEALELLDEMTSKGLQPDIITYSTIA---SGLCREDRIEEAVRTFCKVQDMGI 477
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
RP YN ++ LC+ + A L M G C P+ TYTIL+ G+
Sbjct: 478 RPTAALYNAILLGLCKRRETHNAIDLFAYMISSG--CMPNESTYTILVEGLAYEGL 531
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+ M C PD+ +YN ++ ALCR G + A LL Q++ G C P + +Y
Sbjct: 357 IHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKG--CSPVLISY 414
Query: 245 TILISSYCKYG 255
+I K G
Sbjct: 415 NTVIDGLTKAG 425
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV YN ++ C G + AR L+ M + PD YTY LI C G
Sbjct: 132 PDVMVYNAMVAGYCGAGQLDAARRLVADMPV-----EPDAYTYNTLIRGLCGRG 180
>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Cucumis sativus]
Length = 757
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 158 MSRRGNGELVTTSTVT-------CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
M+++ E+++T VT LI+ G+V++ F + +F C PDV YN +
Sbjct: 202 MAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTL 261
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
++ LCR G A +++ M P+V TYT LI YC
Sbjct: 262 VDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYC 303
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T L+ G +++AL F RM + + +PD Y+ ++ +LC+ G++ KA LL+
Sbjct: 363 TCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLD 422
Query: 229 QM-----ELPGFRCPPDVYTYTILISSYCKYG 255
++ L G C P V Y + C+ G
Sbjct: 423 KLLERKILLSGDGCKPLVAAYNPIFKYLCETG 454
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 36/181 (19%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL-VTTST 171
+KA +F++W + + H E + M + R ++ +FL + +R G + +
Sbjct: 93 SKALQFFNWAQEM-GYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARF 151
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM- 230
L++ GL E++ F MK P V +N ++ L + G N A+ + ++M
Sbjct: 152 FNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEML 211
Query: 231 ---------------------------------ELPGFRCPPDVYTYTILISSYCKYGMQ 257
+L F C PDV TY L+ C+ G
Sbjct: 212 STYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKV 271
Query: 258 T 258
T
Sbjct: 272 T 272
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
E L+++ L + C+P V AYN + LC G KA Q+ G + PP
Sbjct: 418 EDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDPP-- 475
Query: 242 YTYTILISSYCKYG 255
+Y LI +CK G
Sbjct: 476 -SYKTLIMGHCKEG 488
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 1/114 (0%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R V ++ +K M ++ T T LI+ + + +ALA F M +
Sbjct: 265 LCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLK 324
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ YN +I LC F K + +LE G PD T+ L+ +C G
Sbjct: 325 ANNITYNTLIKGLCEARKFEKIKDILEGTAGDG-TFSPDTCTFNTLMHCHCHAG 377
>gi|341605703|gb|AEK82954.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605705|gb|AEK82955.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605709|gb|AEK82957.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605813|gb|AEK83009.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605815|gb|AEK83010.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605817|gb|AEK83011.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605819|gb|AEK83012.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G ++
Sbjct: 116 NGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDE 175
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISS 250
A L ++ME C VYTYTILIS
Sbjct: 176 AMXLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM +G V + +I L +EG +NE A F M + +P+V Y V+I+
Sbjct: 6 QEMDEKGI--QVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 63
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G+ A LL +M GF+ PDV TY+++++ CK G
Sbjct: 64 KSGSVEDAIRLLHRMIDEGFK--PDVVTYSVVVNGLCKNG 101
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02060, chloroplastic-like [Cucumis sativus]
Length = 720
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 158 MSRRGNGELVTTSTVT-------CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
M+++ E+++T VT LI+ G+V++ F + +F C PDV YN +
Sbjct: 202 MAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTL 261
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
++ LCR G A +++ M P+V TYT LI YC
Sbjct: 262 VDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYC 303
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T L+ G +++AL F RM + + +PD Y+ ++ +LC+ G++ KA LL+
Sbjct: 363 TCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLD 422
Query: 229 QM-----ELPGFRCPPDVYTYTILISSYCKYG 255
++ L G C P V Y + C+ G
Sbjct: 423 KLLERKILLSGDGCKPLVAAYNPIFKYLCETG 454
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 36/181 (19%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL-VTTST 171
+KA +F++W + + H E + M + R ++ +FL + +R G + +
Sbjct: 93 SKALQFFNWAQEM-GYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARF 151
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM- 230
L++ GL E++ F MK P V +N ++ L + G N A+ + ++M
Sbjct: 152 FNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEML 211
Query: 231 ---------------------------------ELPGFRCPPDVYTYTILISSYCKYGMQ 257
+L F C PDV TY L+ C+ G
Sbjct: 212 STYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKV 271
Query: 258 T 258
T
Sbjct: 272 T 272
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
E L+++ L + C+P V AYN + LC G KA Q+ G + PP
Sbjct: 418 EDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDPP-- 475
Query: 242 YTYTILISSYCKYG 255
+Y LI +CK G
Sbjct: 476 -SYKTLIMGHCKEG 488
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 1/114 (0%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R V ++ +K M ++ T T LI+ + + +ALA F M +
Sbjct: 265 LCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLK 324
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ YN +I LC F K + +LE G PD T+ L+ +C G
Sbjct: 325 ANNITYNTLIKGLCEARKFEKIKDILEGTAGDG-TFSPDTCTFNTLMHCHCHAG 377
>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
Length = 538
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
FAR + L++M R G ++VT ST LI VL +E +A M+
Sbjct: 309 FARAGQFDASLELLEDMRRNGVKPDVVTYST---LINVLCKERKFQDAFRLLELMEAAGS 365
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P+V YN V++ LC+ G ++ + E M RC PDV TY+I+++ K GM
Sbjct: 366 PPNVVTYNSVMDGLCKSGKMDEVHRVYEMM--LKSRCSPDVVTYSIIMNGLSKAGM 419
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R +G + T + LI G + +L M++ +PDV Y+ +IN LC+ F
Sbjct: 291 RQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKF 350
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A LLE ME G PP+V TY ++ CK G
Sbjct: 351 QDAFRLLELMEAAG--SPPNVVTYNSVMDGLCKSG 383
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
NEVT + F + + + F +E R G L + + L + G ++ A
Sbjct: 227 NEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSL-EAAAYPGYLDALCKAGYLDRARK 285
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+ ++Q PDV Y+++IN R G F+ + LLE M G + PDV TY+ LI+
Sbjct: 286 SVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVK--PDVVTYSTLINV 343
Query: 251 YCK 253
CK
Sbjct: 344 LCK 346
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T ++ L + G ++E + M + RC PDV Y++++N L + G + A L E +
Sbjct: 371 TYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELI 430
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ R PD Y+++I+S C+ G
Sbjct: 431 K--SSREGPDAAAYSMVITSLCRAG 453
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R N K + +EM R NG T LI+ L G ++EAL +
Sbjct: 133 LCRSNKTKLAREVFQEMKR--NGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELP 190
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
DV ++ LC+ + A +E+M G R P+ TY+ L+ + ++G
Sbjct: 191 TDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVR--PNEVTYSNLVHGFRQHG 242
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + ++ L + G+++ A+ F +K R PD AY++VI +LCR G +A + M
Sbjct: 406 TYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGM 465
Query: 231 EL 232
E+
Sbjct: 466 EV 467
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G+ N+AL + P ++ YN +I LCR A +LE+M P+V+
Sbjct: 68 GMANQALELVRELSGVYT-PTLFIYNGIITGLCRASRVMDAYKVLEKMVEESI--VPNVF 124
Query: 243 TYTILISSYCK 253
TYTIL++ C+
Sbjct: 125 TYTILLNGLCR 135
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V +A +M + P+V+ Y +++N LCR AR + ++M+ G C P+ TY
Sbjct: 104 VMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNG--CKPNPITY 161
Query: 245 TILISSYCKYG 255
LI + G
Sbjct: 162 GTLIQHLSRAG 172
>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
Length = 548
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVT-TSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + V+ +EMS+RG LV+ T T LI+ + G V++A F +M F
Sbjct: 340 FCKAKRVEDGMKLFREMSQRG---LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI 396
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD++ YN+++ LC G KA + E M+ D+ TYT +I CK G
Sbjct: 397 SPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM--DLDIVTYTTVIRGMCKTG 449
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+ L+ V++A++ +M + +PD+ AYN +I++LC+ N A +++
Sbjct: 157 TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI 216
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
E G R P+V TYT L++ C
Sbjct: 217 ERKGIR--PNVVTYTALVNGLC 236
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + +V +F +M G + T + L+ L + G + +AL F M++
Sbjct: 375 FFQAGDVDKAQEFFSQMDFFGISPDIWTYNI--LLGGLCDNGELEKALVIFEDMQKREMD 432
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
D+ Y VI +C+ G +A L + L G + PD+ TYT ++S C G+
Sbjct: 433 LDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLK--PDIVTYTTMMSGLCTKGL 485
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ + G V EA F M + PD+ Y+ ++N LC ++A + + M
Sbjct: 262 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLM 321
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C DV +Y LI+ +CK
Sbjct: 322 VSKG--CLADVVSYNTLINGFCK 342
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 105 PQKVTLGI--------NKATEFYHWVERFFHFFHNEVTCKEMGIV--FARGNNVKGLWDF 154
P +VT+G N+ ++ V++ + I+ + V +DF
Sbjct: 153 PDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDF 212
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
KE+ R+G V T T L+ L ++A M + + P+V Y+ +++A
Sbjct: 213 FKEIERKGIRPNVVTYTA--LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF 270
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ G +A+ L E+M PD+ TY+ L++ C
Sbjct: 271 VKNGKVLEAKELFEEM--VRMSIDPDIVTYSSLVNGLC 306
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L + VN+A F +++ RP+V Y ++N LC ++ A LL M
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKK- 254
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ P+V TY+ L+ ++ K G
Sbjct: 255 -KITPNVITYSALLDAFVKNG 274
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+N+A+ F M + R P + +N +++A+ ++ ++ L ++ME+ G R D+YT+
Sbjct: 66 LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIR--NDLYTF 123
Query: 245 TILISSYC 252
I+I+ +C
Sbjct: 124 NIVINCFC 131
>gi|399107198|gb|AFP20363.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 116 RFNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 175
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 176 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 204
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 25 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 84
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 85 FK--PDVVTYSVVVNGLCKNG 103
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 39 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 96
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 97 NGLCKNGRVEEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 154
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 155 CTRDSYCYNALIDALTKHG 173
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 20 HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLIDGYAKSG 68
>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
Length = 538
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
FAR + L++M R G ++VT ST LI VL +E +A M+
Sbjct: 309 FARAGQFDASLELLEDMRRNGVKPDVVTYST---LINVLCKERKFQDAFRLLELMEAAGS 365
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P+V YN V++ LC+ G ++ + E M RC PDV TY+I+++ K GM
Sbjct: 366 PPNVVTYNSVMDGLCKSGKMDEVHRVYEMM--LKSRCSPDVVTYSIIMNGLSKAGM 419
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R +G + T + LI G + +L M++ +PDV Y+ +IN LC+ F
Sbjct: 291 RQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKF 350
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A LLE ME G PP+V TY ++ CK G
Sbjct: 351 QDAFRLLELMEAAG--SPPNVVTYNSVMDGLCKSG 383
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
NEVT + F + + + F +E R G L + + L + G ++ A
Sbjct: 227 NEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSL-EAAAYPGYLDALCKAGYLDRARK 285
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+ ++Q PDV Y+++IN R G F+ + LLE M G + PDV TY+ LI+
Sbjct: 286 SVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVK--PDVVTYSTLINV 343
Query: 251 YCK 253
CK
Sbjct: 344 LCK 346
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T ++ L + G ++E + M + RC PDV Y++++N L + G + A L E +
Sbjct: 371 TYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELI 430
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ R PD Y+++I+S C+ G
Sbjct: 431 K--SSREGPDAAAYSMVITSLCRAG 453
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R N K + +EM R NG T LI+ L G ++EAL +
Sbjct: 133 LCRSNKTKLAREVFQEMKR--NGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELP 190
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
DV ++ LC+ + A +E+M G R P+ TY+ L+ + ++G
Sbjct: 191 TDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVR--PNEVTYSNLVHGFRQHG 242
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G+ N+AL + P V+ YN +I LCR A +LE+M P+V+
Sbjct: 68 GMANQALELVRELSGVYT-PTVFIYNGIITGLCRASRVMDAYKVLEKMVEESI--VPNVF 124
Query: 243 TYTILISSYCK 253
TYTIL++ C+
Sbjct: 125 TYTILLNGLCR 135
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + ++ L + G+++ A+ F +K R PD AY++VI +LCR G +A + M
Sbjct: 406 TYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGM 465
Query: 231 EL 232
E+
Sbjct: 466 EV 467
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQ 229
T T L+ L A F MK+ C+P+ Y +I L R G ++A R ++EQ
Sbjct: 125 TYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQ 184
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
L P DV T T ++ CK
Sbjct: 185 RSLE---LPTDVITCTTIVGGLCK 205
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V +A +M + P+V+ Y +++N LCR AR + ++M+ G C P+ TY
Sbjct: 104 VMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNG--CKPNPITY 161
Query: 245 TILISSYCKYG 255
LI + G
Sbjct: 162 GTLIQHLSRAG 172
>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
hermannioides]
Length = 417
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + G V+ A+ + RM PD+ YN +I LC+ G+ +A L+++M
Sbjct: 235 TFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 294
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G + PD +TYT LI CK G
Sbjct: 295 SMKGLK--PDKFTYTTLIDGCCKEG 317
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++K D + EMS +G T T LI +EG ++ A RM Q R
Sbjct: 278 LCKKGDLKQAHDLIDEMSMKGLKP--DKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIR 335
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D AY +I+ LC+ G A +L +M + PD TYT++I+ +CK G
Sbjct: 336 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLK--PDTGTYTMIINEFCKKG 387
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
++G + A + F + ++ RP V +YN ++N R+G+ ++ L M G + PD
Sbjct: 140 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQ--PD 197
Query: 241 VYTYTILISSYCK 253
VYTY++LI+ CK
Sbjct: 198 VYTYSVLINGLCK 210
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PDVY Y+V+IN LC+ + A L ++M + G P+ T+T LI CK G
Sbjct: 195 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGL--IPNGVTFTTLIDGRCKNG 247
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI L +EG +A M +PD Y ++IN C+ G+ K LL++M+
Sbjct: 342 TALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 401
Query: 233 PGFRCPPDVYTYTILISS 250
G P V TY +L++
Sbjct: 402 DGH--APSVVTYNVLMNG 417
>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 690
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
V L D ++M + +G T LI LG G V EA+ F ++ C+PD+ +Y
Sbjct: 497 VSHLHDLYEKM--KQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISY 554
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N +IN L + G+ ++A +M+ G PDV TY+ LI + K
Sbjct: 555 NSLINCLGKNGDVDEAHMRFLEMQDKGLN--PDVVTYSTLIECFGK 598
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I++ G+ G E+LA F M C P++ AYN +I AL + G +KA L M
Sbjct: 311 TYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNM 370
Query: 231 ELPGFRCPPDVYTYTILIS 249
C P+ +TY+I+++
Sbjct: 371 --IKNNCRPNEFTYSIILN 387
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFR 199
RG + L ++ +G ++T T+ ++ LG+ V+ + +MKQ
Sbjct: 456 LCRGGKTVEAIELLSKVHEKG----ISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDG 511
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD++ YN++I++L RVG +A + E++E C PD+ +Y LI+ K G
Sbjct: 512 PFPDIFTYNILISSLGRVGKVKEAVEVFEELE--SSDCKPDIISYNSLINCLGKNG 565
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI LG+ G V+EA F M+ PDV Y+ +I + AR L ++M G
Sbjct: 557 LINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQG 616
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P++ TY IL+ + G
Sbjct: 617 --CCPNIVTYNILLDCLERAG 635
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L ++ ++ + F MK C PD Y Y ++I ++G ++ L E+M G
Sbjct: 280 LLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKG 339
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
C P++ Y +I + K GM
Sbjct: 340 --CTPNLIAYNTMIQALSKSGM 359
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 157 EMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
EM +G N ++VT ST LI+ G+ V A + F RM C P++ YN++++ L
Sbjct: 576 EMQDKGLNPDVVTYST---LIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLE 632
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
R G + L ++ G PD TY IL
Sbjct: 633 RAGRTAETVDLYAKLREQGL--TPDSITYAIL 662
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T CL++ + A + M + D++AYN++++AL + +++ + + M
Sbjct: 241 TYRCLLQAHIRSRDSDRAFNVYMEMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDM 300
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+L C PD YTYTI+I K G
Sbjct: 301 KLK--HCNPDEYTYTIMIRMTGKMG 323
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
+I+ L + G+V++A+ F M + CRP+ + Y++++N L G + +LE
Sbjct: 350 MIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLE 403
>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
Length = 484
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
++ + +EM RG T +T LI +EG V L + M + D+ AY
Sbjct: 200 IQDAMEMFEEMCERGLNP--NTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAY 257
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N ++N CRV + A ++E+M G + PD TYT LI CK G
Sbjct: 258 NALVNGFCRVRDMKAANDIVEEMRKDGLK--PDKVTYTTLIDGCCKEG 303
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T T +I + G V M+ P + YNVV+N C +G A LL
Sbjct: 360 TTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNA 419
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M G CP D+ TY IL+ +CK+G
Sbjct: 420 MLNIGV-CPNDI-TYNILLDGHCKHG 443
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R + + EM RRG T T L+ + + +N A A M + PD
Sbjct: 126 RSGKLASARNVFDEMLRRGVQP--TVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPD 183
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
VY Y I LC+ G A + E+M G P+ T LI ++CK G
Sbjct: 184 VYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLN--PNTVVLTTLIDAHCKEG 233
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
+G D EM + + E V VT LI L + G +A M + +PD
Sbjct: 302 EGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTT 361
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +VI+A C+ G+ L++M+ G P + TY ++++ +C G
Sbjct: 362 YTMVIDAFCKNGDVKTGFKHLKEMQNKGKN--PGIVTYNVVMNGFCSLG 408
>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 870
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + LK+M R NG T T LI LG +G + E M++
Sbjct: 570 FCKQGKISSALRVLKDMER--NGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIH 627
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ YN +IN LC G A LL +M G P+V ++ ILI ++CK G
Sbjct: 628 PDICTYNNMINCLCEGGKTKDATSLLHEMLDKGV-VSPNVSSFKILIKAFCKSG 680
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 52/124 (41%), Gaps = 26/124 (20%)
Query: 154 FLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
L EM R+G +T TC L+ L +EG +EA +M + + D N+V+
Sbjct: 420 ILNEMIRKG----CHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIVV 475
Query: 212 NALCRVGNFNKARFLLEQMELPGFRC--------------------PPDVYTYTILISSY 251
N LCR G KA ++ +M G PDV TYT LI+
Sbjct: 476 NGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPDVITYTTLINGL 535
Query: 252 CKYG 255
CK G
Sbjct: 536 CKVG 539
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L E ++G G V+ + + L G + E + M + P++Y+YN+V++ L
Sbjct: 315 LVETMKKG-GNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGL 373
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CR AR L++ M G PD TYT L+ YC G
Sbjct: 374 CRNHMMLDARRLMDLMVSNGVY--PDTVTYTTLLHGYCSKG 412
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ ++ + +EA RM + PDV +N I+ALCR G +A + M++ G
Sbjct: 225 LVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISALCRAGKVFEASRIFRDMQMDG 284
Query: 235 -FRCP-PDVYTYTILISSYCKYGM 256
P P+V T+ +++ +C+ GM
Sbjct: 285 ELGLPKPNVVTFNLMLKGFCQEGM 308
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG T T T L+ +G V EA A M + C P+ Y N ++N+L + G ++
Sbjct: 392 NGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSE 451
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A +L++M ++ D T I+++ C+ G
Sbjct: 452 AEEMLQKMNEKSYQL--DTVTCNIVVNGLCRNG 482
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV Y +IN LC+VG +A+ +E+ PD TY + ++CK G
Sbjct: 523 PDVITYTTLINGLCKVGKLEEAKKKF--IEMMAKNLHPDSVTYDTFVLNFCKQG 574
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI+ L E ++ A F +M + C+P+ + +++ CR G +A
Sbjct: 151 TYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGRTKQA----- 205
Query: 229 QMELPGFRCPPDV--YTYTILISSYCKYGM 256
+E + +V Y L+SS+CK M
Sbjct: 206 -LEFVDGKMGGNVNRVVYNTLVSSFCKQDM 234
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L + G + EA F M PD Y+ + C+ G + A +L+ M
Sbjct: 527 TYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLKDM 586
Query: 231 ELPGFRCPPDVYTYTILI 248
E G C + TY LI
Sbjct: 587 ERNG--CSKTLQTYNSLI 602
>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G L +T T +IK G + +A+ F +M + P+V YN +I C+ GN N
Sbjct: 406 HGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNN 465
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A LLE M+ G + PD +TYT LIS + + G
Sbjct: 466 AMRLLEIMKGNGLK--PDAWTYTELISGFSRGG 496
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 96/242 (39%), Gaps = 53/242 (21%)
Query: 54 SIPRFFFQSPRSIGRQTGFRHR----TPLKQRILKKEADNIANNVLVLGPAAYRNPQKVT 109
S+ RFFF I R+ F+H + R+++ A++V +L + RN +V
Sbjct: 93 SVLRFFFW----ISRRKFFKHDMSCFVSMLNRLVRDRLFAPADHVRILMIKSCRNEGEV- 147
Query: 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVT 168
+ T+F + + F + + + I + + V D +M G L+T
Sbjct: 148 ---KRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLT 204
Query: 169 TSTVTCLIKVLGEEGLVNEA-----------------------------------LATFY 193
+T +I +L ++G V EA A F
Sbjct: 205 FNT---MINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFD 261
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
RM + C P+ Y+ +IN LC G +A +LE+M G P VYTYTI + S C
Sbjct: 262 RMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIE--PTVYTYTIPLVSLCD 319
Query: 254 YG 255
G
Sbjct: 320 AG 321
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F++ N++ +F +M ++G L T T I L G A F+ M++
Sbjct: 562 FSKTNSISEAENFCGKMVKQG--LLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYF 619
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++Y Y+ +I LC+ G A L + C P+V TYT L+ C G
Sbjct: 620 PNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEG 673
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N T + + R +N+ + M + G + VT ST LI L EG + EA+
Sbjct: 236 NAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYST---LINGLCSEGRLEEAM 292
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
M Q P VY Y + + +LC G ++A LL +M+ G C P++ T+T LIS
Sbjct: 293 DMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRG--CVPNIQTFTALIS 350
Query: 250 SYCKYG 255
+ G
Sbjct: 351 GLSRDG 356
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D L+EM ++G V T T+ + L + G +EA+ +MK+ C P++ + +I+
Sbjct: 293 DMLEEMVQKGIEPTVYTYTIP--LVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALIS 350
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L R G F A L +M G P TY LI+ C G
Sbjct: 351 GLSRDGKFEIAIGLYHKMLADGL--VPTTVTYNALINQLCVEG 391
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 51/136 (37%), Gaps = 35/136 (25%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L +M +RG + T T LI L +G A+ +++M P YN +IN
Sbjct: 328 ELLGKMKKRGC--VPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALIN 385
Query: 213 ALCRVGNFNKA----RFLLEQMELPG-------FRC----------------------PP 239
LC G F A +++L LP +C P
Sbjct: 386 QLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSP 445
Query: 240 DVYTYTILISSYCKYG 255
+V TY LI YCK G
Sbjct: 446 NVITYNTLIYGYCKQG 461
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++ALA F++M + P YNV+I+ + + ++A +M G P+V TY
Sbjct: 533 VDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLL--PNVITY 590
Query: 245 TILISSYCKYG 255
T I C+ G
Sbjct: 591 TSFIDGLCRNG 601
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G L ++ T +I + ++EA +M + P+V Y I+ LCR G
Sbjct: 546 SGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGL 605
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A + +ME + P++YTY+ LI C+ G
Sbjct: 606 AFKIFHEMEKRNYF--PNLYTYSSLIYGLCQEG 636
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
NV+ + +M RG T T LIK G + EAL + M Q C P+V A
Sbjct: 294 NVELAFALFAQMFLRGCD--ANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVA 351
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN +I+ LC G+ +A + +QM+ G C P+V TY+ILI + K G
Sbjct: 352 YNTLIHGLCSNGSLEEALQVCDQMQRSG--CLPNVTTYSILIDGFAKSG 398
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
+M R G VTT ++ LI + G + A T+ RM CRP+V Y +++ LC+
Sbjct: 374 QMQRSGCLPNVTTYSI--LIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCK 431
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
F++A L+E+M L G C P+ T+ I C G
Sbjct: 432 NSMFDQANSLVEKMTLEG--CTPNTMTFNTFIKGLCGNG 468
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 37/117 (31%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCR-------------------------------- 201
C+I G +AL FYR+ +F C+
Sbjct: 114 CIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKD 173
Query: 202 ---PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V+ YN+++ ALC+ + A L +M G CPPD TYT ++SS CK G
Sbjct: 174 GLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKG--CPPDAVTYTTMVSSLCKAG 228
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ +G + T L+K L + V+ A F M C PD Y ++++LC+ G
Sbjct: 171 KKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKI 230
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ AR EL G R P V Y LI CK G
Sbjct: 231 DDAR------ELAG-RFKPSVPVYNALIDGMCKEG 258
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
FA+ ++ G + M G V T TC++ VL + + ++A + +M C
Sbjct: 394 FAKSGDLVGASETWNRMISHGCRPNVVT--YTCMVDVLCKNSMFDQANSLVEKMTLEGCT 451
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
P+ +N I LC G A LLE+M+ G C P++ TY L+ +
Sbjct: 452 PNTMTFNTFIKGLCGNGRVEWAMKLLERMQ--GHGCLPNITTYNELLDA 498
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F RG + L D K M + G +V +T LI L G + EAL +M++ C
Sbjct: 325 FMRGKLYEAL-DLWKLMIQDGCEPNVVAYNT---LIHGLCSNGSLEEALQVCDQMQRSGC 380
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P+V Y+++I+ + G+ A +M G C P+V TYT ++ CK M
Sbjct: 381 LPNVTTYSILIDGFAKSGDLVGASETWNRMISHG--CRPNVVTYTCMVDVLCKNSM 434
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T IK L G V A+ RM+ C P++ YN +++AL R+ + +A L +
Sbjct: 454 TMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQ 513
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
++E + P++ TY ++ + + GM
Sbjct: 514 EIEARNLQ--PNLVTYNTVLYGFSRAGM 539
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI + +EG + A+ M P+V +Y+ +IN+LC GN A L QM L G
Sbjct: 250 LIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG 309
Query: 235 FRCPPDVYTYTILI 248
C +++T+T LI
Sbjct: 310 --CDANIHTFTPLI 321
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+G+G L +T L+ L EA F ++ +P++ YN V+ R G
Sbjct: 481 QGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMM 540
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A L + + G PD TY +I +YCK G
Sbjct: 541 GEALQLFGKALVRG--TAPDSITYNTMIHAYCKQG 573
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + V EMS +G T T ++ L + G +++A R R
Sbjct: 188 ALCKNDRVDAAHKLFVEMSNKGCPP--DAVTYTTMVSSLCKAGKIDDA-----RELAGRF 240
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P V YN +I+ +C+ G A LL +M G P+V +Y+ +I+S C G
Sbjct: 241 KPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGV--DPNVVSYSCIINSLCVSG 293
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N T E+ R N + + +E+ R LVT +TV + G++ EAL
Sbjct: 488 NITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTV---LYGFSRAGMMGEAL 544
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
F + PD YN +I+A C+ G A L+E++ PD+ TYT LI
Sbjct: 545 QLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVS-SMKEWHPDIITYTSLIW 603
Query: 250 SYCKY 254
C +
Sbjct: 604 GACNW 608
>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
Length = 892
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + G++++AL F RM++ R VY YN +IN C+ NF++AR LL +M
Sbjct: 372 TYAILIHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEM 431
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P +Y+ LI+ C+ G
Sbjct: 432 VEKGL--APSAASYSPLIAGLCRKG 454
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ + +EM+R NG T T LI ++G ++EA F +M
Sbjct: 450 LCRKGDLASAMELHREMAR--NGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVV 507
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P+ +NV+I CRVGN KA L +QM G PD YTY LIS C
Sbjct: 508 PNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGL--TPDNYTYRSLISVLC 556
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T T LIK + G + A+ + PD +Y+ +IN LC+VG+ NKA
Sbjct: 749 GCLANTVTFNTLIKGFCKAGQIQGAIDLMQNNTESGFFPDCISYSTIINELCKVGDINKA 808
Query: 224 RFLLEQMELPGFRCPPDVYTYTILI 248
L +M G + PD+ Y ILI
Sbjct: 809 FQLWNEMLYKGLK--PDIVAYNILI 831
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 12/171 (7%)
Query: 84 KKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYH-WVERFFHFFHNEVTCKEMGIVF 142
K+ D++ NN +VL + + TE YH W E ++ + IV+
Sbjct: 565 KEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTV-IVY 623
Query: 143 A--RGNNVKGLWDFLKEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQF 198
A + ++ + + +EM +G V V TC+I V +E + +AL + +M
Sbjct: 624 AALKLHDGEKISVLFREMKEKG----VKPDNVFHTCMIDVHSKEENIVQALNCWDKMIAD 679
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
C P+V Y V+IN LC+ G + A+ L E+M + F P+ +TY +
Sbjct: 680 GCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFL--PNSFTYNCFLD 728
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+ ++ + ++ L + G +++A + + P+++A N +I+ LC+ F +A L
Sbjct: 299 SVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNALIDKLCKDRRFREAERLF 358
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
M G P+ TY ILI S CK GM
Sbjct: 359 RGMANRGLE--PNEVTYAILIHSLCKRGM 385
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + +N L EM +G + ++ + LI L +G + A+ M +
Sbjct: 415 YCQHDNFHQARGLLNEMVEKGLAP--SAASYSPLIAGLCRKGDLASAMELHREMARNGVS 472
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+VY + +I+ C+ GN ++A L ++M P+ T+ ++I YC+ G
Sbjct: 473 GNVYTFTTLISGFCKDGNMDEAARLFDKM--IDSSVVPNEVTFNVMIEGYCRVG 524
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L ++ EA F M P+ Y ++I++LC+ G + A + ++M G
Sbjct: 341 LIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKG 400
Query: 235 FRCPPDVYTYTILISSYCKY 254
R VY Y LI+ YC++
Sbjct: 401 IRVT--VYPYNSLINGYCQH 418
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 13/168 (7%)
Query: 88 DNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN 147
D I+ V+V + +K+++ + E + FH +V KE IV A
Sbjct: 614 DLISFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHSKEENIVQALN-- 671
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
WD +M G V T TV LI L + G ++ A M R P+ + Y
Sbjct: 672 ---CWD---KMIADGCSPNVVTYTV--LINHLCKSGYLSSAQILCEEMLVGRFLPNSFTY 723
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N ++ L G KA+ L + L G C + T+ LI +CK G
Sbjct: 724 NCFLDFLANEGELEKAKVLHATI-LEG--CLANTVTFNTLIKGFCKAG 768
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T C + L EG + +A + + C + +N +I C+ G A L++
Sbjct: 722 TYNCFLDFLANEGELEKAKVLHATILE-GCLANTVTFNTLIKGFCKAGQIQGAIDLMQNN 780
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF PD +Y+ +I+ CK G
Sbjct: 781 TESGFF--PDCISYSTIINELCKVG 803
>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
L +ST LI + +EG V E L+ M + +P V Y ++I + R G+F+ A
Sbjct: 561 LPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANR 620
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ QM G + PDVYTYT I +YC G
Sbjct: 621 VFNQMVSFGHK--PDVYTYTAFIHTYCTSG 648
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T +T T LI+ + EG + A F +M F +PDVY Y I+ C GN +A ++
Sbjct: 598 TVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMM 657
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
+M G PD TYT+LIS+Y + G+
Sbjct: 658 ARMIEAGVM--PDSLTYTLLISAYERLGL 684
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R N+V + M +G + T +I L E G ++E ++ F +M++ C
Sbjct: 259 YCRNNDVNSAYKVFNMMPNKGCRR--NEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCY 316
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P V Y V+I+AL GN + E+ C P+V+TYT+++ + CK
Sbjct: 317 PTVRTYTVIIHAL--FGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCK 366
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T +I L E + F M++ C P+V+ Y V+++A+C+ +++R +L
Sbjct: 318 TVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRIL 377
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M G P V TY LI YC+ G
Sbjct: 378 NEMMEKGL--VPSVVTYNALIRGYCEEG 403
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 146 NNVKGLWDFLKEMSRRGNGEL--VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
++++ L DFL++M+R N ++ + L+ +L +++E + M P+
Sbjct: 154 DDIRFLLDFLRQMNRDDNDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPN 213
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+Y N ++NA ++GN +A + ++ G PD +TYT LI YC+
Sbjct: 214 IYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLS--PDSFTYTSLILGYCR 261
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
L++ LKE + N + T LI + G ++EA++ RM C P+ YN +
Sbjct: 516 LFNSLKEKGIKANEVMYTA-----LIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSL 570
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I +C+ G + ++E M G + P V TYTILI + G
Sbjct: 571 IYGVCKEGKVQEGLSMVENMSKMGVK--PTVATYTILIEEMLREG 613
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++A+ +M + + P + YN +I+ C+ G+F+ A LL+ ++ G PD +TY
Sbjct: 440 VHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGL--VPDQWTY 497
Query: 245 TILISSYCK 253
++ I + CK
Sbjct: 498 SVFIDTLCK 506
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
L D LKE NG + T + I L + + EA F +K+ + + Y +
Sbjct: 481 LLDLLKE-----NGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTAL 535
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I+ C+ G ++A LLE+M C P+ TY LI CK G
Sbjct: 536 IDGHCKAGKIDEAISLLERMH--SEDCLPNSSTYNSLIYGVCKEG 578
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L EM +G LV + T LI+ EEG + AL M+ CRP+ YN +I
Sbjct: 376 ILNEMMEKG---LVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELIC 432
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ + +KA LL +M + P + TY LI CK G
Sbjct: 433 GFSKRKHVHKAMTLLSKM--LESKLTPSLVTYNSLIHVQCKAG 473
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+F N++G+ D EM R V T TV ++ + +E ++E+ M +
Sbjct: 329 LFGNDRNLEGM-DLFNEMRERSCEPNVHTYTV--MVDAMCKERKLDESRRILNEMMEKGL 385
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P V YN +I C G A +L ME C P+ TY LI + K
Sbjct: 386 VPSVVTYNALIRGYCEEGRIEAALEILGLME--SNNCRPNERTYNELICGFSK 436
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEA 188
NE T E+ F++ +V L +M +T S VT LI V + G + A
Sbjct: 423 NERTYNELICGFSKRKHVHKAMTLLSKMLESK----LTPSLVTYNSLIHVQCKAGHFDSA 478
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+K+ PD + Y+V I+ LC+ +A L ++ G + + YT LI
Sbjct: 479 YKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKA--NEVMYTALI 536
Query: 249 SSYCKYG 255
+CK G
Sbjct: 537 DGHCKAG 543
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI VN A F M CR + +Y +I+ LC G ++ L ++M
Sbjct: 251 TYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKM 310
Query: 231 ELPGFRCPPDVYTYTILISS 250
C P V TYT++I +
Sbjct: 311 REDD--CYPTVRTYTVIIHA 328
>gi|225430658|ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial [Vitis vinifera]
gi|296085168|emb|CBI28663.3| unnamed protein product [Vitis vinifera]
Length = 454
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 113 NKATE---FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTT 169
N TE F++W + + +E+ AR + +W +M + ++
Sbjct: 88 NSGTESLRFFNWARSHLSYQPTTLEYEELLKTLARTKQFQPMWKIAHQM------QTLSP 141
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQ-FRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
+ V+ +I+ G+ GLV++A+ F + K C + YN ++ ALC V F+ A L+
Sbjct: 142 TVVSSIIEEFGKHGLVDQAVEVFNKAKSALNCPQTIEVYNSLLFALCEVKYFHGAYALIR 201
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M G P+ TY++L++ +C G
Sbjct: 202 RMIRKGV--TPNKQTYSVLVNGWCAAG 226
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
+K DFL+EMSR+G V + L+ L G + A +M + C PDV
Sbjct: 225 AGKMKEAQDFLEEMSRKGFNPPVRGRDL--LVDGLLNAGYLEAAKEMVRKMTKEGCAPDV 282
Query: 205 YAYNVVINALCRVGNFNKARFLLEQM-ELPGFRCPPDVYTYTILISSYCKYG 255
N ++ A+C+ G +A F ++ ++ P+V TY I+I + CK G
Sbjct: 283 ETLNSMLEAICKAG---EAEFCIDIYNDVCRLGVSPNVGTYKIMIPAACKEG 331
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D ++ R G V T + +I +EG ++EA +R + RP Y +I
Sbjct: 303 DIYNDVCRLGVSPNVGTYKI--MIPAACKEGRIDEAFRILHRSIEDGHRPFPSLYAPIIK 360
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
ALCR G F+ A M++ G PP+ YT+LI+
Sbjct: 361 ALCRNGQFDDAFCFFSDMKVKGH--PPNRPVYTMLIT 395
>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G L +T T +IK G + +A+ F +M + P+V YN +I C+ GN N
Sbjct: 406 HGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNN 465
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A LLE M+ G + PD +TYT LIS + + G
Sbjct: 466 AMRLLEIMKGNGLK--PDAWTYTELISGFSRGG 496
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 96/242 (39%), Gaps = 53/242 (21%)
Query: 54 SIPRFFFQSPRSIGRQTGFRHR----TPLKQRILKKEADNIANNVLVLGPAAYRNPQKVT 109
S+ RFFF I R+ F+H + R+++ A++V +L + RN +V
Sbjct: 93 SVLRFFFW----ISRRKFFKHDMSCFVSMLNRLVRDRLFAPADHVRILMIKSCRNEGEV- 147
Query: 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVT 168
+ T+F + + F + + + I + + V D +M G L+T
Sbjct: 148 ---KRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLT 204
Query: 169 TSTVTCLIKVLGEEGLVNEA-----------------------------------LATFY 193
+T +I +L ++G V EA A F
Sbjct: 205 FNT---MINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFD 261
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
RM + C P+ Y+ +IN LC G +A +LE+M G P VYTYTI + S C
Sbjct: 262 RMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIE--PTVYTYTIPLVSLCD 319
Query: 254 YG 255
G
Sbjct: 320 AG 321
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F++ N++ +F +M ++G L T T I L G A F+ M++
Sbjct: 562 FSKTNSISEAENFCGKMVKQG--LLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYF 619
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++Y Y+ +I LC+ G A L + C P+V TYT L+ C G
Sbjct: 620 PNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEG 673
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N T + + R +N+ + M + G + VT ST LI L EG + EA+
Sbjct: 236 NAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYST---LINGLCSEGRLEEAM 292
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
M Q P VY Y + + +LC G ++A LL +M+ G C P++ T+T LIS
Sbjct: 293 DMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRG--CVPNIQTFTALIS 350
Query: 250 SYCKYG 255
+ G
Sbjct: 351 GLSRDG 356
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D L+EM ++G V T T+ + L + G +EA+ +MK+ C P++ + +I+
Sbjct: 293 DMLEEMVQKGIEPTVYTYTIP--LVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALIS 350
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L R G F A L +M G P TY LI+ C G
Sbjct: 351 GLSRDGKFEIAIGLYHKMLADGL--VPTTVTYNALINQLCVEG 391
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 51/136 (37%), Gaps = 35/136 (25%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L +M +RG + T T LI L +G A+ +++M P YN +IN
Sbjct: 328 ELLGKMKKRGC--VPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALIN 385
Query: 213 ALCRVGNFNKA----RFLLEQMELPG-------FRC----------------------PP 239
LC G F A +++L LP +C P
Sbjct: 386 QLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSP 445
Query: 240 DVYTYTILISSYCKYG 255
+V TY LI YCK G
Sbjct: 446 NVITYNTLIYGYCKQG 461
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++ALA F++M + P YNV+I+ + + ++A +M G P+V TY
Sbjct: 533 VDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLL--PNVITY 590
Query: 245 TILISSYCKYG 255
T I C+ G
Sbjct: 591 TSFIDGLCRNG 601
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G L ++ T +I + ++EA +M + P+V Y I+ LCR G
Sbjct: 546 SGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGL 605
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A + +ME + P++YTY+ LI C+ G
Sbjct: 606 AFKIFHEMEKRNYF--PNLYTYSSLIYGLCQEG 636
>gi|341605747|gb|AEK82976.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605749|gb|AEK82977.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605751|gb|AEK82978.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RFNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 82
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 83 FK--PDVVTYSVVVNGLCKNG 101
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 18 HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLIDGYAKSG 66
>gi|242061532|ref|XP_002452055.1| hypothetical protein SORBIDRAFT_04g017800 [Sorghum bicolor]
gi|241931886|gb|EES05031.1| hypothetical protein SORBIDRAFT_04g017800 [Sorghum bicolor]
Length = 810
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L E G V EAL F Q C+PD+++YN V+ LCR G + A L+ M
Sbjct: 279 IISCLAELGRVEEALHLF---DQMPCKPDIFSYNTVMKGLCRDGRWEDAGTLIAGMVRKD 335
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
CPPD T+ +IS C G+
Sbjct: 336 --CPPDEVTFNTVISYLCHRGL 355
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 148 VKGL-----WD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
+KGL WD L EM R G T +I L + GL + A+ +M +
Sbjct: 210 LKGLCSNKEWDDAEELLSEMIRSGCPP--NDLTFGMIIHSLCQNGLADRAMGVLDQMSKC 267
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RC V YN +I+ L +G +A L +QM C PD+++Y ++ C+ G
Sbjct: 268 RCTRGVIVYNEIISCLAELGRVEEALHLFDQMP-----CKPDIFSYNTVMKGLCRDG 319
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI E+ +AL M C PD Y+ + LCR + AR L+ +M
Sbjct: 687 LINGFAEQYRAEDALQLLRNMP---CEPDTICYSAALKGLCRAKRWEDARELIAEM---- 739
Query: 235 FR--CPPDVYTYTILISSYCKYGM 256
FR CP D T+++LI S C+ G+
Sbjct: 740 FRKQCPLDEATFSMLIGSLCQNGL 763
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 13/112 (11%)
Query: 149 KGLWDF----LKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
KGL D+ L+EM++ G + +++ ++ LI E G V++AL F K C+ +
Sbjct: 455 KGLVDYGAEVLREMTKFGCSPDIIIYNS---LINGFSENGSVDDALELF---KNMSCKRN 508
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V YN ++ LCR + A L+ +M C P+ T++ LIS C+ G
Sbjct: 509 VVTYNYMLKGLCRAEQWEDAGKLVAEM--VKDECLPNEVTFSTLISYLCQKG 558
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L ++ V++AL M C+PD Y+ + LCR + A L+ +E+
Sbjct: 585 LINGLSDQECVDDALKLLNDMP---CKPDTICYSAALKGLCRAERWEDAGELI--LEMIR 639
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD T++ILI++ C G
Sbjct: 640 KNCLPDEVTFSILINNLCHKG 660
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L ++G V A+ F +M ++ C P+V Y+ +IN L + A LL M
Sbjct: 546 TFSTLISYLCQKGFVECAIEVFEKMPKYNCMPNVIIYSTLINGLSDQECVDDALKLLNDM 605
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C PD Y+ + C+
Sbjct: 606 P-----CKPDTICYSAALKGLCR 623
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L ++GLV+ M +F C PD+ YN +IN G+ + A L + M
Sbjct: 448 IIDCLCQKGLVDYGAEVLREMTKFGCSPDIIIYNSLINGFSENGSVDDALELFKNMS--- 504
Query: 235 FRCPPDVYTYTILISSYCK 253
C +V TY ++ C+
Sbjct: 505 --CKRNVVTYNYMLKGLCR 521
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 21/142 (14%)
Query: 122 VERFFHFFHNEVTCKEMGIVFARGNNVKGL-----WD----FLKEMSRRGNG-ELVTTST 171
VE H F +++ CK +F+ +KGL W+ + M R+ + VT +T
Sbjct: 289 VEEALHLF-DQMPCKP--DIFSYNTVMKGLCRDGRWEDAGTLIAGMVRKDCPPDEVTFNT 345
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
V I L GLV+ A+ +M ++ C+PD + Y+ ++NAL G + A LL +
Sbjct: 346 V---ISYLCHRGLVDCAMEVVEQMPKYGCKPDNFTYSALVNALSERGCVDDALELLRTIP 402
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
P+ Y ++ C+
Sbjct: 403 W-----KPNTVCYRSVLKGLCR 419
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L ++ G+ ++VT +T L+ EG +N+A M P+ Y + ++
Sbjct: 159 MLASLALSGSADVVTYNT---LVAGYCREGRLNDARRLVADMPFA---PNSYTNSTLLKG 212
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC ++ A LL +M G CPP+ T+ ++I S C+ G+
Sbjct: 213 LCSNKEWDDAEELLSEMIRSG--CPPNDLTFGMIIHSLCQNGL 253
>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
Length = 642
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
+T S LIK G+ G+V E L + +MK+ P +Y YN ++N L + A +
Sbjct: 167 MTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERV 226
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
E ME R PD+ TY +I YCK G
Sbjct: 227 FEVME--SGRIKPDIVTYNTMIKGYCKAG 253
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R +G + + + LI LG+ G V+EA F M + C D Y YN +I+A +
Sbjct: 406 RFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKV 465
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++A L ++ME C VYTYTIL+S K
Sbjct: 466 DEAIALFKRMEEEE-GCDQTVYTYTILLSGMFK 497
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM +G V + +I L +EG +NE F M + +P+V Y V+I+
Sbjct: 298 QEMDEKGIQ--VPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYA 355
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G+ A LL +M GF+ PDV TY+++++ CK G
Sbjct: 356 KSGSVEDAIRLLHRMIDEGFK--PDVVTYSVVVNGLCKNG 393
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 51/132 (38%), Gaps = 39/132 (29%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC-- 215
M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+N LC
Sbjct: 335 MIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKN 392
Query: 216 ---------------------------------RVGNFNKARFLLEQMELPGFRCPPDVY 242
+ G ++A L E+M G C D Y
Sbjct: 393 GRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKG--CTRDSY 450
Query: 243 TYTILISSYCKY 254
Y LI ++ K+
Sbjct: 451 CYNALIDAFTKH 462
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+W +KE NG T T L+ L V+ A F M+ R +PD+ YN +
Sbjct: 191 VWRKMKE-----NGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTM 245
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
I C+ G KA L ME G D TY +I +
Sbjct: 246 IKGYCKAGQTQKAMEKLRDMETRGHE--ADKITYMTMIQA 283
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L++M RG+ T +I+ + +A + M + + +A+++VI L
Sbjct: 262 LRDMETRGHE--ADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGL 319
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 320 CKEGKLNEGYTVFENMIRKGSK--PNVAIYTVLIDGYAKSG 358
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
NV+ + +M RG T T LIK G + EAL + M Q C P+V A
Sbjct: 294 NVELAFALFAQMFLRGCD--ANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVA 351
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN +I+ LC G+ +A + +QM+ G C P+V TY+ILI + K G
Sbjct: 352 YNTLIHGLCSNGSLEEALQVCDQMQRSG--CLPNVTTYSILIDGFAKSG 398
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+M R G VTT ++ LI + G + A T+ RM CRP+V Y +++ LC
Sbjct: 373 DQMQRSGCLPNVTTYSI--LIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLC 430
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ F++A L+E+M L G C P+ T+ I C G
Sbjct: 431 KNSMFDQANSLVEKMTLEG--CTPNTITFNTFIKGLCGNG 468
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 37/117 (31%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCR-------------------------------- 201
C+I G +AL FYR+ +F C+
Sbjct: 114 CIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKD 173
Query: 202 ---PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V+ YN+++ ALC+ + A L +M G CPPD TYT ++SS CK G
Sbjct: 174 GLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKG--CPPDAVTYTTMVSSLCKAG 228
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ +G + T L+K L + V+ A F M C PD Y ++++LC+ G
Sbjct: 171 KKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKI 230
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ AR EL G R P V Y LI CK G
Sbjct: 231 DDAR------ELAG-RFKPSVPVYNALIDGMCKEG 258
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
FA+ ++ G + M G V T TC++ VL + + ++A + +M C
Sbjct: 394 FAKSGDLVGASETWNRMISHGCRPNVVT--YTCMVDVLCKNSMFDQANSLVEKMTLEGCT 451
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
P+ +N I LC G A LLE+M+ G C P++ TY L+ +
Sbjct: 452 PNTITFNTFIKGLCGNGRVEWAMKLLERMQ--GHGCLPNITTYNELLDA 498
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F RG + L D K M + G +V +T LI L G + EAL +M++ C
Sbjct: 325 FMRGKLYEAL-DLWKLMIQDGCEPNVVAYNT---LIHGLCSNGSLEEALQVCDQMQRSGC 380
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P+V Y+++I+ + G+ A +M G C P+V TYT ++ CK M
Sbjct: 381 LPNVTTYSILIDGFAKSGDLVGASETWNRMISHG--CRPNVVTYTCMVDVLCKNSM 434
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI + +EG + A+ M P+V +Y+ +IN+LC GN A L QM L G
Sbjct: 250 LIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG 309
Query: 235 FRCPPDVYTYTILI 248
C +++T+T LI
Sbjct: 310 --CDANIHTFTPLI 321
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T IK L G V A+ RM+ C P++ YN +++AL R+ + +A L +
Sbjct: 454 TITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQ 513
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
++E + P++ TY ++ + + GM
Sbjct: 514 EIEARNLQ--PNLVTYNTVLYGFSRAGM 539
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+G+G L +T L+ L EA F ++ +P++ YN V+ R G
Sbjct: 481 QGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMM 540
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A L + + G PD TY +I +YCK G
Sbjct: 541 GEALQLFGKALVRG--TAPDSITYNTMIHAYCKQG 573
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + V EMS +G T T ++ L + G +++A R R
Sbjct: 188 ALCKNDRVDAAHKLFVEMSNKGCPP--DAVTYTTMVSSLCKAGKIDDA-----RELAGRF 240
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P V YN +I+ +C+ G A LL +M G P+V +Y+ +I+S C G
Sbjct: 241 KPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGV--DPNVVSYSCIINSLCVSG 293
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N T E+ R N + + +E+ R LVT +TV + G++ EAL
Sbjct: 488 NITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTV---LYGFSRAGMMGEAL 544
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
F + PD YN +I+A C+ G A L+E++ PD+ TYT LI
Sbjct: 545 QLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVS-SMKEWHPDIITYTSLIW 603
Query: 250 SYCKY 254
C +
Sbjct: 604 GACNW 608
>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 536
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI+ L G +A+ M F C PD+ YN +I C+ KA + +
Sbjct: 206 TKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFD 265
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
++ C PDV TYT +IS YCK G
Sbjct: 266 DVK-SSSGCSPDVVTYTSMISGYCKAG 291
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 4/142 (2%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+ KA E + V+ + VT M + + ++ L +M R G T T
Sbjct: 257 LKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLG--IYPTNVT 314
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
L+ + G ++ A +M F C PDV + +I+ CRVG N+ L E+M
Sbjct: 315 FNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMN 374
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
G P+ +TY+ILI++ CK
Sbjct: 375 ARGMF--PNAFTYSILINALCK 394
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 20/182 (10%)
Query: 85 KEADNIANNVLVLGPAAYRNPQKVTL-----GINKATEFYHWVERF------FHFFHNEV 133
+EA + +++L LG P VT G KA E H E F F + V
Sbjct: 294 QEASVLLDDMLRLGIY----PTNVTFNVLVDGYAKAGEM-HTAEEIRGKMISFGCFPDVV 348
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193
T + + R V + +EM+ RG T + LI L +E + +A
Sbjct: 349 TFTSLIDGYCRVGQVNQGFRLWEEMNARG--MFPNAFTYSILINALCKENRLLKARELLG 406
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++ P + YN VI+ C+ G N+A ++E+ME +C PD T+TILI +C
Sbjct: 407 QLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKK--KCKPDKITFTILIIGHCM 464
Query: 254 YG 255
G
Sbjct: 465 KG 466
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
V L+ L + V +A+ F +F+ D +N++I LC VG KA LL M
Sbjct: 174 VNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMS 233
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
GF C PD+ TY LI +CK
Sbjct: 234 --GFGCLPDIVTYNTLIKGFCK 253
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G VNEA+ M++ +C+PD + ++I C G +A + +M G C PD
Sbjct: 431 GKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIG--CSPDKI 488
Query: 243 TYTILISSYCKYGM 256
T + L+S K GM
Sbjct: 489 TVSSLLSCLLKAGM 502
>gi|399107190|gb|AFP20359.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 116 RFNGLAINSIFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 175
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 176 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 204
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 25 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 84
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 85 FK--PDVVTYSVVVNGLCKNG 103
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 39 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 96
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 97 NGLCKNGRVEEALDYFQTCRFNGLAINSIFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 154
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 155 CTRDSYCYNALIDALTKHG 173
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+A + M + + + +++VI LC+ G N+ + E M G + P+V YT+LI
Sbjct: 4 VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLI 61
Query: 249 SSYCKYG 255
Y K G
Sbjct: 62 DGYAKSG 68
>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
Length = 628
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+EM G V T LI + G+ EA + F M C PD+ YN V++A
Sbjct: 423 LLQEMQAVGCKPNVVTYAA--LINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSA 480
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ G +KA + +Q++ C PD TY ILI YC+
Sbjct: 481 FSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCR 520
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRG--NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ NV W ++M G +++ +T LI + G +++A MK
Sbjct: 339 LCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNT---LISGFCKAGRLSQAHQLLIEMKAKN 395
Query: 200 -CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
C PDV YN +I+ + G+ +A+ LL++M+ G C P+V TY LI+ Y K+GM
Sbjct: 396 ICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVG--CKPNVVTYAALINGYAKHGM 451
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDV YN I+ LC+ G +K +LE+M+ G PPDV T+ +IS CK
Sbjct: 185 PDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGI--PPDVVTFCSIISGLCK 234
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + +A M+ C+P+V Y +IN + G + +A L ++M G C PD+
Sbjct: 415 GSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKG--CFPDII 472
Query: 243 TYTILISSYCKYGMQT 258
TY ++S++ K GM +
Sbjct: 473 TYNTVLSAFSKAGMMS 488
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
+I L + G V++A +M C+PDV +N +I+ C+ G ++A LL +M+
Sbjct: 335 VIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAK 394
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
C PDV TY LI K+G
Sbjct: 395 NI-CVPDVVTYNTLIDGQSKFG 415
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 154 FLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ--FRCRPDVYAYNVV 210
EMS +G +++T +TV + + G++++A + ++K C PD Y ++
Sbjct: 458 LFDEMSAKGCFPDIITYNTV---LSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRIL 514
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
I+ CR + + LL++M G+ C D YTY +LI+
Sbjct: 515 IDGYCRAEDTEQGLTLLQEMTARGWSC--DSYTYNVLIA 551
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
NG + T T LI L + G ++ A A +M C P+V Y +I+ LC+ +
Sbjct: 3 ANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPH 62
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYC 252
A +++M G C PD+ TY LI C
Sbjct: 63 DAIQTVKRMLRSG--CEPDLVTYNSLIHGLC 91
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
KGL + L+EM R G V T +I L + +++A F M + C PD Y+
Sbjct: 205 KGL-EMLEEMDRGGIPPDVVT--FCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYS 261
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++++ L R + +LE M+ C +VYT+ I + C+ G
Sbjct: 262 IMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSG 308
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
V Y +I+ LC+ G+ + A+ LL++M G C P+V TYT LI CK
Sbjct: 10 VVTYTTLIDGLCKSGDLDAAQALLQKMADAG--CAPNVVTYTALIDGLCK 57
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++ L++M+ G V T T LI L + ++A+ T RM + C
Sbjct: 20 LCKSGDLDAAQALLQKMADAGCAPNVVTYTA--LIDGLCKARRPHDAIQTVKRMLRSGCE 77
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD+ YN +I+ LC + A +L+++ GF P+ TY+ L+ C+
Sbjct: 78 PDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGF--APNHITYSTLVIWNCR 127
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+E L MK C +VY +N I ALCR G F A+ +L M G P++ +Y
Sbjct: 276 VDEVLEHMQAMKA-GCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSL--PNLLSY 332
Query: 245 TILISSYCKYG 255
+I CK G
Sbjct: 333 NFVIDGLCKSG 343
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE-EGLVNEALATFYRMKQFRC 200
+ R + + L+EM+ RG + T LI L E E + ++ALA + +M C
Sbjct: 518 YCRAEDTEQGLTLLQEMTARGWS--CDSYTYNVLIAKLAETEEVPSKALAVYQQMLDQDC 575
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
P +N ++ R G+ N AR ++++M G
Sbjct: 576 VPSASIFNSLVRLFLRTGDVNSARSMVQEMNEKG 609
>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
Length = 987
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ T LI+ L E V EAL + M C +++ Y ++I LC+ G + AR LL++M
Sbjct: 251 SYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEM 310
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L G P V+TY +I YCK G
Sbjct: 311 PLRGV--VPSVWTYNAMIDGYCKSG 333
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G ++T T T L+ + G + A +M C+ D+Y Y+V++ ALC+ N+A
Sbjct: 590 GVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEA 649
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+L+QM + G +C ++ YTI+IS K G
Sbjct: 650 LSILDQMTVSGVKC--NIVAYTIIISEMIKEG 679
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F++ N +++M G + T +V L++ L ++ +NEAL+ +M +
Sbjct: 605 FSKAGNTDFAAVLIEKMVNEGCKADLYTYSV--LLQALCKQKKLNEALSILDQMTVSGVK 662
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ AY ++I+ + + G + A+ L +M G + P TYT+ ISSYCK G
Sbjct: 663 CNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHK--PSATTYTVFISSYCKIG 714
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE I ARG L EM RG + + T +I + G + +AL
Sbjct: 295 CKEGRIHDARG--------LLDEMPLRG--VVPSVWTYNAMIDGYCKSGRMKDALGIKAL 344
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
M+Q C PD + YN +I LC G ++A LL GF P V T+T LI+ YCK
Sbjct: 345 MEQNGCNPDDWTYNSLIYGLCG-GKLDEAEELLNGAIARGF--TPTVITFTNLINGYCK 400
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G + T T LIK L +EG +++A M P V+ YN +I+ C+ G
Sbjct: 278 DGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKD 337
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYC 252
A + ME G C PD +TY LI C
Sbjct: 338 ALGIKALMEQNG--CNPDDWTYNSLIYGLC 365
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI + +++AL M C+ D+ AY V+IN L + +A+ L
Sbjct: 387 TVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETL 446
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
+M G P+V TYT +I YCK GM
Sbjct: 447 NEMFANGL--APNVVTYTSIIDGYCKVGM 473
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
NG T T +I + G+V AL F M+ C P+ + Y +I L + +
Sbjct: 451 ANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLH 510
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
KA L+ +M+ G P V TYT LI CK
Sbjct: 511 KAMALITKMQEDGI--TPGVITYTTLIQGQCK 540
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I + +EG + A + F M +P Y V I++ C++G +A L+ +ME
Sbjct: 669 TIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMER 728
Query: 233 PGFRCPPDVYTYTILISS 250
G PDV TY I I+
Sbjct: 729 DGV--TPDVVTYNIFING 744
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L ++ +++A+A +M++ P V Y +I C+ F+ A L E M
Sbjct: 495 TYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMM 554
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G PD Y +L + CK G
Sbjct: 555 EQNGL--TPDEQAYNVLTDALCKSG 577
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T T +I ++G + A F +++ + D Y N ++ CR + KA
Sbjct: 174 GLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKA 233
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+LL M L G C + Y+YTILI C+
Sbjct: 234 CWLLMMMPLMG--CRRNEYSYTILIQGLCE 261
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
EM G+ TT TV I + G + EA M++ PDV YN+ IN
Sbjct: 687 LFNEMISSGHKPSATTYTV--FISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFING 744
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+G ++A L++M C P+ +TY +L+ + K +
Sbjct: 745 CGHMGYIDRAFSTLKRM--VDASCEPNCWTYWLLLKHFLKMSL 785
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R +G + T T L+ + +A M CR + Y+Y ++I LC
Sbjct: 206 RESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCV 265
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A L+ M G C +++TYT+LI CK G
Sbjct: 266 REALVLVFMMVHDG--CSLNLHTYTLLIKGLCKEG 298
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI VL ++ + EA T M P+V Y +I+ C+VG A + + ME G
Sbjct: 429 LINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEG 488
Query: 235 FRCPPDVYTYTILI 248
C P+ +TY LI
Sbjct: 489 --CHPNAWTYGSLI 500
>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 347
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M C PD++ YN +I LC+ G AR L+ +M++ G C P+V TYTILI +CK
Sbjct: 5 MLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKG--CEPNVITYTILIDRFCKE 62
Query: 255 G 255
G
Sbjct: 63 G 63
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCRP 202
GN KGL F MS+ N + ++C LI L G + AL M P
Sbjct: 203 GNIEKGLALFEDMMSKGLN-----PNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTP 257
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
D+ YN +IN LC+ G +A L +++++ G PD TY LIS +CK GM
Sbjct: 258 DIVTYNSLINGLCKTGRAQEALNLFDKLQVEGI--CPDAITYNTLISWHCKEGM 309
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEA 188
N ++C + R N++ +FL++M RG +T VT LI L + G EA
Sbjct: 223 NNISCNILINGLCRTGNIQHALEFLRDMIHRG----LTPDIVTYNSLINGLCKTGRAQEA 278
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
L F +++ PD YN +I+ C+ G F+ A LL + GF P+ T+ IL+
Sbjct: 279 LNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGF--IPNEVTWYILV 336
Query: 249 SSYCKYGMQ 257
S++ K G Q
Sbjct: 337 SNFIKEGDQ 345
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L EMS G G + CLI L ++ V +AL F M C+PD++ +N +I L
Sbjct: 72 LDEMS--GKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGL 129
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+V F +A L + M L G + TY LI ++ + G
Sbjct: 130 CKVNKFEEALGLYQDMLLEGV--IANTITYNTLIHAFLRRG 168
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LIK L G + + LA F M P+ + N++IN LCR GN A L M
Sbjct: 191 TYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDM 250
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PD+ TY LI+ CK G
Sbjct: 251 IHRGL--TPDIVTYNSLINGLCKTG 273
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T LI G + EAL M C D YN +I ALCR GN K
Sbjct: 149 GVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKG 208
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L E M G P+ + ILI+ C+ G
Sbjct: 209 LALFEDMMSKGLN--PNNISCNILINGLCRTG 238
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L ++G + A M+ C P+V Y ++I+ C+ G +AR +L++M
Sbjct: 16 TYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEM 75
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G + Y LIS+ CK
Sbjct: 76 SGKGL--ALNAVGYNCLISALCK 96
>gi|341605721|gb|AEK82963.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605821|gb|AEK83013.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RFNGLAINSMFYSSLIXGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 82
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 83 FK--PDVVTYSVVVNGLCKNG 101
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIXGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 18 HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLIDGYAKSG 66
>gi|224576645|gb|ACN56996.1| At1g03560-like protein [Capsella grandiflora]
Length = 196
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 84 RFNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 143
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++A L ++ME C VYTYTILI K
Sbjct: 144 DEAMTLFKRMEEEE-GCDQTVYTYTILIXGMFK 175
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +NE A F M + +P+V Y V+I+ + G+ A LL +M GF+ PDV
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK--PDVV 58
Query: 243 TYTILISSYCKYG 255
TY ++++ CK G
Sbjct: 59 TYXVVVNGLCKNG 71
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 50/133 (37%), Gaps = 39/133 (29%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC-- 215
M R+G+ V TV LI + G V +A+ +RM +PDV Y VV+N LC
Sbjct: 13 MIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYXVVVNGLCKN 70
Query: 216 ---------------------------------RVGNFNKARFLLEQMELPGFRCPPDVY 242
+ G ++A L E+M G C D Y
Sbjct: 71 GRVEEALDYFQTCRFNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKG--CTRDSY 128
Query: 243 TYTILISSYCKYG 255
Y LI + K+G
Sbjct: 129 CYNALIDALTKHG 141
>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 548
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ EM RG +VT S++ + L + V++A+A +K RPD+Y Y ++I
Sbjct: 398 LVDEMHDRGQPPNIVTYSSI---LDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIK 454
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G A+ + E + + G+ DVY YT++I +C G
Sbjct: 455 GLCQSGRLEDAQNVFEDLLVKGYNL--DVYAYTVMIQGFCDKG 495
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
++ +R +G+LV + V +I + + LVN+A + +M R PDV+ YN +I+
Sbjct: 187 QLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGF 246
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V N A L +M+ P+VYT+ IL+ +CK G
Sbjct: 247 SAVSKLNYAIDLFNKMKKENIN--PNVYTFNILVDGFCKEG 285
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI +N A+ F +MK+ P+VY +N++++ C+ G N A+ +L M
Sbjct: 238 TYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIM 297
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
+ PDV TY L+ YC
Sbjct: 298 MKDDIK--PDVVTYNSLMDGYC 317
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L + G + AL M P++ Y+ +++ALC+ + +KA LL +
Sbjct: 378 TYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNL 437
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G R PD+YTYTILI C+ G
Sbjct: 438 KDQGIR--PDMYTYTILIKGLCQSG 460
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LIK L + G + +A F + DVYAY V+I C G F+KA LL +M
Sbjct: 448 TYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKM 507
Query: 231 ELPGFRCPPDVYTYTILISS 250
E G C P+ TY ++I S
Sbjct: 508 EDNG--CIPNAKTYELVILS 525
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N K ++D S G + T ++ + +V+EA+ F M+ + P+V
Sbjct: 323 NKAKDIFD-----SMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVV 377
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
Y+ +I+ LC++G A L+++M G PP++ TY+ ++ + CK
Sbjct: 378 TYSSLIDGLCKLGRIFYALKLVDEMHDRG--QPPNIVTYSSILDALCK 423
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ +EG VN+A M + +PDV YN +++ C + NKA+ + + M
Sbjct: 273 TFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSM 332
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
G +V YT +++ +CK M
Sbjct: 333 ASGG--VIANVQIYTTMVNGFCKIKM 356
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G + AL R+ +P+ YN++I+ +C+ N A L QM
Sbjct: 172 LINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAK- 230
Query: 235 FRCPPDVYTYTILISSY 251
R PDV+TY LIS +
Sbjct: 231 -RICPDVFTYNALISGF 246
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LIK L +G +++AL ++ D +Y +IN LC+VG A LL
Sbjct: 130 TAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLL 189
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++++ G P+ Y ++I + CK
Sbjct: 190 KRVD--GKLVQPNAVMYNMIIDNMCK 213
>gi|15225722|ref|NP_180822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75160493|sp|Q8S8P6.1|PP180_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32630
gi|20197234|gb|AAM14987.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330253613|gb|AEC08707.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 624
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEV-TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS 170
+++A+ Y +E+ F +V TC + F R +L M G ++T
Sbjct: 415 VDEASMIYDVMEQ--KGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMME--GGVKLSTV 470
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ T LI V +EG V EA F M +P+ YNV+I A C+ G +AR L M
Sbjct: 471 SYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANM 530
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
E G PD YTYT LI C
Sbjct: 531 EANGM--DPDSYTYTSLIHGEC 550
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + + G+ LK M + +G + T T L+++ + G +++A F M++
Sbjct: 269 YVKQRDFSGVEGVLKVMKK--DGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIE 326
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
DV+ Y +I+ CR GN +A L +++ G P YTY LI CK G
Sbjct: 327 SDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGL--SPSSYTYGALIDGVCKVG 378
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 10/130 (7%)
Query: 130 HNEVT---CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186
+N+VT E+ + + ++ + L+D EM RG V T LI +G +
Sbjct: 292 YNKVTYTLLMELSVKNGKMSDAEKLFD---EMRERGIESDV--HVYTSLISWNCRKGNMK 346
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
A F + + P Y Y +I+ +C+VG A L+ +M+ G V +
Sbjct: 347 RAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVV--FNT 404
Query: 247 LISSYCKYGM 256
LI YC+ GM
Sbjct: 405 LIDGYCRKGM 414
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V+ + NV+ EMS +G T V +I ++G + EA M+
Sbjct: 478 VYCKEGNVEEAKRLFVEMSSKGVQPNAITYNV--MIYAYCKQGKIKEARKLRANMEANGM 535
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y Y +I+ C N ++A L +M L G + TYT++IS K G
Sbjct: 536 DPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGL--DQNSVTYTVMISGLSKAG 588
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+ EM +G +T LI +G+V+EA + M+Q + DV+ N + +
Sbjct: 386 LMNEMQSKGVN--ITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASC 443
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R+ +++A+ L +M G + +YT LI YCK G
Sbjct: 444 FNRLKRYDEAKQWLFRMMEGGVKLST--VSYTNLIDVYCKEG 483
>gi|358348674|ref|XP_003638369.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355504304|gb|AES85507.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 501
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 91/225 (40%), Gaps = 28/225 (12%)
Query: 40 QNPFT-----IESVA-DVLKSIPRFFFQSP----RSIGRQTGFRHRTPLKQRILKKEADN 89
QNPF+ IESV D +++ P R + + G R L + +L N
Sbjct: 72 QNPFSLRQGFIESVKLDAKRALEVLRQDGPGLDARLVLEELGIRPSGILVREVLFGILKN 131
Query: 90 IANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVK 149
I N + T A +F+ W + + H + ++A K
Sbjct: 132 I-------------NSENKTRCAKLAYKFFVWCGQQEDYRHTANAYHLIMNIYAECKEFK 178
Query: 150 GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
LW + EM G G T T LI+ GE GL + F + K F RP ++YN
Sbjct: 179 ALWRLVDEMI--GKGYKATARTFNILIRTCGEAGLAKTLVERFIKSKSFNYRPFKHSYNA 236
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
++++ + + ++ EQM L G D+ TY I+I Y KY
Sbjct: 237 ILHSFLVLNQYKLIEWVYEQMLLDG-GFSSDILTYNIVI--YAKY 278
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F+R + F EM + G V TV V+ E + +A F M
Sbjct: 362 FSRAGKLDACQYFFNEMKKNGCMPDVVAYTVMITGYVVARE--LEKAQEMFEEMLSKELV 419
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
P+V+ YN +I LC G F++A + ++ME G C P+ Y L+S
Sbjct: 420 PNVFTYNSMIRGLCMAGKFDEACSMFKEMERKG--CSPNSVVYITLVS 465
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
LG+E +AL M++ P V + +I+ R G + ++ +M+ G C
Sbjct: 327 LGKEKEQFKALKLLNYMRETGIEPTVLHFTTLIDGFSRAGKLDACQYFFNEMKKNG--CM 384
Query: 239 PDVYTYTILISSY 251
PDV YT++I+ Y
Sbjct: 385 PDVVAYTVMITGY 397
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI G ++ F MK+ C PDV AY V+I KA+ + E+M
Sbjct: 356 TTLIDGFSRAGKLDACQYFFNEMKKNGCMPDVVAYTVMITGYVVARELEKAQEMFEEM-- 413
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
P+V+TY +I C G
Sbjct: 414 LSKELVPNVFTYNSMIRGLCMAG 436
>gi|302143887|emb|CBI22748.3| unnamed protein product [Vitis vinifera]
Length = 518
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 4/139 (2%)
Query: 117 EFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLI 176
+F+ W + ++ H + +FA + K +W + EM +G VT T LI
Sbjct: 178 KFFMWSGQQENYRHTVNAYHLIMKIFAESDEFKAMWRLVDEMIEQGFP--VTARTFQILI 235
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
GE GL A+ F + K F RP ++YN +++ L + + ++ +QM L +
Sbjct: 236 CTCGEAGLARRAVERFVKSKNFNYRPFKHSYNAILHCLLCLKQYKLVEWVYQQMLLEDY- 294
Query: 237 CPPDVYTYTILISSYCKYG 255
PD+ TY I++ + + G
Sbjct: 295 -SPDILTYNIVMCTKYRLG 312
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ +LG+ AL MK+ P V + +I+ L R GN + ++ ++M
Sbjct: 335 TFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDACKYFFDEM 394
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C PDV YT++I+ Y G
Sbjct: 395 IKLG--CMPDVVCYTVMITGYIVAG 417
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 4/112 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ +GN D L M G V T LI L G ++ F M + C
Sbjct: 342 LLGKGNKPLAALDLLNHMKEVGFDPSVLH--FTTLIDGLSRAGNLDACKYFFDEMIKLGC 399
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
PDV Y V+I G A+ L E+M + G P+V+TY +I C
Sbjct: 400 MPDVVCYTVMITGYIVAGELEMAQGLFEEMTVKG--QLPNVFTYNSMIRGLC 449
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+R N+ F EM + G V TV ++ G + A F M
Sbjct: 378 LSRAGNLDACKYFFDEMIKLGCMPDVVCYTVMITGYIVA--GELEMAQGLFEEMTVKGQL 435
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
P+V+ YN +I LC F +AR +L++ME G C P+ Y L+ +
Sbjct: 436 PNVFTYNSMIRGLCMAEKFEEARSMLKEMESRG--CNPNFLVYNTLVGN 482
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
TV L+ +EG + E L+ M RPD + +N ++N LCR+G+ A +L+ M
Sbjct: 283 TVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVM 342
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF PD++TY LI CK G
Sbjct: 343 LQEGF--DPDIFTYNSLIFGLCKLG 365
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ F MK C PD + YN++I++LC G +A LL++ME G C +V TY L
Sbjct: 440 AMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSG--CSRNVVTYNTL 497
Query: 248 ISSYCK 253
I +CK
Sbjct: 498 IDGFCK 503
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRG--NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ + ++ + F+ EMS G S V L ++ G V AL M Q
Sbjct: 291 YCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRI----GHVKHALEILDVMLQEG 346
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD++ YN +I LC++G +A +L QM L F P+ TY LIS+ CK
Sbjct: 347 FDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFS--PNTVTYNTLISTLCK 398
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI L +E V EA + PDV +N +I LC N A L E
Sbjct: 386 TVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFE 445
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M+ G C PD +TY +LI S C G
Sbjct: 446 EMKTKG--CHPDEFTYNMLIDSLCSRG 470
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
NN + + +EM +G T LI L G + EAL+ M+ C +V
Sbjct: 435 NNHRLAMELFEEMKTKGCHP--DEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVV 492
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN +I+ C+ +A + ++MEL G +V TY LI CK
Sbjct: 493 TYNTLIDGFCKNKRIEEAEEIFDEMELQGIS--RNVVTYNTLIDGLCK 538
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + ++ + EM +G V T LI L + V EA +M +
Sbjct: 501 FCKNKRIEEAEEIFDEMELQGISRNVVTYNT--LIDGLCKNRRVEEAAQLMDQMLMEGLK 558
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD + YN ++ CR G+ KA +++ M G C PD TY LI K G
Sbjct: 559 PDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNG--CEPDSVTYGTLILGLSKAG 610
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V GN +K + M RG VTT + LIK L + A+ M +
Sbjct: 185 VLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNI--LIKALCRAHQIRPAILMMEEMGSYGL 242
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD + ++ GN N A + EQM G CP T +L+ YCK G
Sbjct: 243 SPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAG--CPSSNVTVNVLVHGYCKEG 295
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L++ EEG +N AL +M C NV+++ C+ G + +++M
Sbjct: 248 TFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEM 307
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GFR PD +T+ L++ C+ G
Sbjct: 308 SNEGFR--PDRFTFNSLVNGLCRIG 330
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN-FNK 222
G ++ T +IK L E +EA+ F M + PD Y VV LC G +
Sbjct: 626 GMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGE 685
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
A L +M GF PD ++ +L C M+
Sbjct: 686 AVDFLVEMTDKGFL--PDFSSFLMLAEGLCALSME 718
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE R K ++D +K + + + T T LI G V+EA+
Sbjct: 318 CKE-----GRLEEAKEVFDEMKSLGLKPD-----TVGYTTLINFFCRAGRVDEAMELLKD 367
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M++ +CR D +NV++ LCR G F +AR +LE++ G + +Y I+++S C+
Sbjct: 368 MRENKCRADTVTFNVILGGLCREGRFEEARGMLERLPYEGVYL--NKASYRIVLNSLCRE 425
Query: 255 G 255
G
Sbjct: 426 G 426
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+ AL MK+ C P+V+ Y+ ++N C+ G +A+ + ++M+ G + PD Y
Sbjct: 288 VDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLK--PDTVGY 345
Query: 245 TILISSYCKYG 255
T LI+ +C+ G
Sbjct: 346 TTLINFFCRAG 356
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 144 RGNNVKGLWDFLKEM--SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRC 200
+ ++ ++ ++EM S L+T ST LI L G + EA+ F M + +
Sbjct: 212 KNGDIDSAFEVVEEMKKSHVSYPNLITYST---LINGLCGSGRLKEAIELFEEMVSKDQI 268
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD YN +IN C ++A ++E M+ G C P+V+ Y+ L++ +CK G
Sbjct: 269 LPDALTYNALINGFCHGEKVDRALKIMEFMKKNG--CNPNVFNYSALMNGFCKEG 321
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR-PDVYAYNVVINALCRVGNFNKARFLL 227
T L+K + G ++ A MK+ P++ Y+ +IN LC G +A L
Sbjct: 200 TCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELF 259
Query: 228 EQMELPGFRCPPDVYTYTILISSYC 252
E+M + + PD TY LI+ +C
Sbjct: 260 EEM-VSKDQILPDALTYNALINGFC 283
>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g03560, mitochondrial; Flags: Precursor
gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
+T S LIK G+ G+V E L + +MK+ P +Y YN ++N L + A +
Sbjct: 185 MTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERV 244
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
E ME R PD+ TY +I YCK G
Sbjct: 245 FEVME--SGRIKPDIVTYNTMIKGYCKAG 271
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R +G + + + LI LG+ G V+EA F M + C D Y YN +I+A +
Sbjct: 424 RFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKV 483
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILIS 249
++A L ++ME C VYTYTIL+S
Sbjct: 484 DEAIALFKRMEEEE-GCDQTVYTYTILLS 511
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM +G V + +I L +EG +NE F M + +P+V Y V+I+
Sbjct: 316 QEMDEKGIQ--VPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYA 373
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G+ A LL +M GF+ PDV TY+++++ CK G
Sbjct: 374 KSGSVEDAIRLLHRMIDEGFK--PDVVTYSVVVNGLCKNG 411
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 51/132 (38%), Gaps = 39/132 (29%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC-- 215
M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+N LC
Sbjct: 353 MIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKN 410
Query: 216 ---------------------------------RVGNFNKARFLLEQMELPGFRCPPDVY 242
+ G ++A L E+M G C D Y
Sbjct: 411 GRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKG--CTRDSY 468
Query: 243 TYTILISSYCKY 254
Y LI ++ K+
Sbjct: 469 CYNALIDAFTKH 480
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+W +KE NG T T L+ L V+ A F M+ R +PD+ YN +
Sbjct: 209 VWRKMKE-----NGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTM 263
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
I C+ G KA L ME G D TY +I +
Sbjct: 264 IKGYCKAGQTQKAMEKLRDMETRGHE--ADKITYMTMIQA 301
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + + + L++M RG+ T +I+ + +A + M + +
Sbjct: 267 YCKAGQTQKAMEKLRDMETRGHE--ADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQ 324
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A+++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 325 VPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSK--PNVAIYTVLIDGYAKSG 376
>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 93/207 (44%), Gaps = 16/207 (7%)
Query: 55 IPRFFFQSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINK 114
+P+ F++ IGR P L + I +++L NP+ + +++
Sbjct: 75 LPKPTFRTRTRIGRSHDPNRGKPWSHHRLSTQGQRILDSLL--------NPEFDSSSLDE 126
Query: 115 AT-EFYHWVERFFHFFHNEVTCKEMGI----VFARGNNVKGLWDFLKEMSRRGNGELVTT 169
+ + +F + V+ +GI VF + N + L F +R +++
Sbjct: 127 ILLQLFETSSDGLNFTSDSVSFDILGIIKGLVFYKKNEL-ALCVFYFVRNREDFASILSN 185
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
S V +I VLG+EG + A + + ++ D+YAY +I A G + +A + ++
Sbjct: 186 SVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKK 245
Query: 230 MELPGFRCPPDVYTYTILISSYCKYGM 256
+E G C P + TY ++++ Y K GM
Sbjct: 246 LEEEG--CRPTLITYNVILNVYGKMGM 270
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187
F ++VT + V+ + + + LKEM G + T LI +GL++E
Sbjct: 322 FSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVT--YNSLISAYARDGLLDE 379
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ +M + +PDV+ Y +++ + G + A + E+M + G C P++ T+ L
Sbjct: 380 AMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAG--CQPNICTFNAL 437
Query: 248 ISSYCKYG 255
I + G
Sbjct: 438 IKMHGNRG 445
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
VT + VF + + KEM R G + T LI G ++A+A +
Sbjct: 467 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGF--VPERDTFNTLISAYSRCGFFDQAMAIY 524
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
RM PD+ YN V+ AL R G + ++ +L +M+ RC P+ TY L+ +Y
Sbjct: 525 RRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMK--DGRCKPNELTYCSLLHAYA 582
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 137 EMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196
+MG+ +++ + GL D +K +G T LI L EA F MK
Sbjct: 267 KMGMPWSK---IAGLVDSMK-----SSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMK 318
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD YN +++ + +A +L++ME GF P + TY LIS+Y + G+
Sbjct: 319 AAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGF--APSIVTYNSLISAYARDGL 376
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+PD+ ++N VI A CR G +A + +M+ F PDV TY I+SY M
Sbjct: 708 KPDIISFNTVIFAYCRNGRMKEASRIFAEMK--DFGLAPDVITYNTFIASYASDSM 761
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
VT + +AR + + +M ++G V T T L+ + G + A+ F
Sbjct: 362 VTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFT--YTTLLSGFEKTGKDDYAMKVF 419
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
M+ C+P++ +N +I GNF + + E++++ C PD+ T+ L++ +
Sbjct: 420 EEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKI--CECVPDIVTWNTLLAVFG 477
Query: 253 KYGMQT 258
+ GM +
Sbjct: 478 QNGMDS 483
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+++R + + D L+E+ +G ++++ +TV I G + EA F MK F
Sbjct: 685 MYSRTEHFEKSEDILREIIAKGMKPDIISFNTV---IFAYCRNGRMKEASRIFAEMKDFG 741
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDV YN I + F +A +++ M G C P+ TY LI +CK
Sbjct: 742 LAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNG--CKPNQNTYNSLIDWFCK 793
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LIK+ G G E + F +K C PD+ +N ++ + G ++ + ++M
Sbjct: 433 TFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 492
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ GF P+ T+ LIS+Y + G
Sbjct: 493 KRAGF--VPERDTFNTLISAYSRCG 515
>gi|341605765|gb|AEK82985.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605767|gb|AEK82986.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605769|gb|AEK82987.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605771|gb|AEK82988.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RFNGLAINSIFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L +EG +NE A F M + +P+V Y V+I+ + G+ A LL +M G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 82
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F+ PDV TY+++++ CK G
Sbjct: 83 FK--PDVVTYSVVVNGLCKNG 101
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRFNGLAINSIFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 18 HVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLIDGYAKSG 66
>gi|224069810|ref|XP_002303045.1| predicted protein [Populus trichocarpa]
gi|222844771|gb|EEE82318.1| predicted protein [Populus trichocarpa]
Length = 388
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF-RCRPDVYAYNVVINALCRVGNFN 221
G VT + T L+ G GL ++A + MK CRPDV+ Y+++I + +V F+
Sbjct: 59 EGCAVTHESYTALLSAYGRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFD 118
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
K + LL ME G R P+ TY +I +Y K M
Sbjct: 119 KVQVLLSDMESLGIR--PNTVTYNTVIDAYGKAKM 151
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME-LP 233
LI +LG+ ++A F M C +Y +++A R G F+KA ++E+M+ P
Sbjct: 36 LIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAYGRSGLFDKAFSIMEEMKNTP 95
Query: 234 GFRCPPDVYTYTILISS 250
C PDV+TY+ILI S
Sbjct: 96 D--CRPDVHTYSILIKS 110
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T +I G+ + E AT M Q C PDV+ N I A G
Sbjct: 136 TVTYNTVIDAYGKAKMFAEMEATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCY 195
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
E+ + G P++ T+ IL+ SY K G
Sbjct: 196 EKFQSAGIE--PNIKTFNILLDSYGKAG 221
>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
Length = 530
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+ CKE I A D + M +RG V T T L E ++EA+
Sbjct: 330 DALCKEGMIAIAH--------DVVDMMIKRGVEPDVVTYTALMDGHCLRSE--MDEAVKV 379
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F M C P+V +YN++IN C++ +KA LLEQM L G D TY LI
Sbjct: 380 FDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGL--IADTVTYNTLIHGL 437
Query: 252 CKYG 255
C G
Sbjct: 438 CHVG 441
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T LI+ L EG + EAL F + +PDV Y ++N LC+VGN + A LL
Sbjct: 183 TTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRS 242
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
M C P+V Y +I S CK
Sbjct: 243 MVQK--NCRPNVIAYNTIIDSLCK 264
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 144 RGNNVKG-----LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
RG V+G L F K + ++VT T L+ L + G + A+ M Q
Sbjct: 190 RGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGT---LMNGLCKVGNTSAAIRLLRSMVQK 246
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
CRP+V AYN +I++LC+ +A L +M G PD++TY LI + C
Sbjct: 247 NCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGIS--PDIFTYNSLIHALC 298
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L++MS +G + T T LI L G + A+A F+ M PD+ Y ++++
Sbjct: 414 LLEQMSLQG--LIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDY 471
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ + +A LL+ +E G D+ Y I I C+ G
Sbjct: 472 LCKNHHLAEAMVLLKAIE--GSNLDADILVYNIAIDGMCRAG 511
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A + ++ + C+PD +N +I LC G +A L ++ GF+ PDV TY L
Sbjct: 166 AFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQ--PDVVTYGTL 223
Query: 248 ISSYCKYG 255
++ CK G
Sbjct: 224 MNGLCKVG 231
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++AL++F RM P + ++ ++ ++ +++ L QM+ F PPDVYT
Sbjct: 93 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMD--SFGIPPDVYTL 150
Query: 245 TILISSYC 252
ILI+S+C
Sbjct: 151 NILINSFC 158
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L ++ V EA F M PD++ YN +I+ALC + + LL +M
Sbjct: 258 IIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEM--VN 315
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
+ P+V ++ ++ + CK GM
Sbjct: 316 SKIMPNVVVFSTVVDALCKEGM 337
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ L +EG++ A M + PDV Y +++ C ++A + + M G
Sbjct: 328 VVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG 387
Query: 235 FRCPPDVYTYTILISSYCK 253
C P+V +Y ILI+ YC+
Sbjct: 388 --CVPNVRSYNILINGYCQ 404
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
L+ +M F PDVY N++IN+ C + A +L ++ G C PD T+ LI
Sbjct: 132 LSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLG--CQPDNTTFNTLI 189
Query: 249 SSYCKYG 255
C G
Sbjct: 190 RGLCVEG 196
>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g64320, mitochondrial; Flags: Precursor
gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 730
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI +EGLV AL + M+ C+P+VY+Y ++++ C++G ++A +L +M
Sbjct: 391 TYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEM 450
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G + P+ + LIS++CK
Sbjct: 451 SADGLK--PNTVGFNCLISAFCK 471
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + ++ L EMS +G T CLI +E + EA+ F M + C+
Sbjct: 434 FCKLGKIDEAYNVLNEMS--ADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCK 491
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDVY +N +I+ LC V A +LL M G + TY LI+++ + G
Sbjct: 492 PDVYTFNSLISGLCEVDEIKHALWLLRDMISEGV--VANTVTYNTLINAFLRRG 543
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEA 188
+E+T + R V ++M R G+ S ++C LI L G+V EA
Sbjct: 563 DEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHA----PSNISCNILINGLCRSGMVEEA 618
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+ M PD+ +N +IN LCR G + +++ G PPD T+ L+
Sbjct: 619 VEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGI--PPDTVTFNTLM 676
Query: 249 SSYCKYG 255
S CK G
Sbjct: 677 SWLCKGG 683
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRC 200
F N + L++M++ G V S + LI L + VNEAL M C
Sbjct: 227 FCAVNEIDSALSLLRDMTKHG---CVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGC 283
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD +N VI LC+ N+A ++ +M + GF PD TY L++ CK G
Sbjct: 284 VPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGF--APDDITYGYLMNGLCKIG 336
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++KA + + R H N ++C + R V+ +F KEM RG+ + T
Sbjct: 580 VDKARSLFEKMLRDGHAPSN-ISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVT-- 636
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
LI L G + + L F +++ PD +N +++ LC+ G A LL++
Sbjct: 637 FNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGI 696
Query: 232 LPGFRCPPDVYTYTILISS 250
GF P+ T++IL+ S
Sbjct: 697 EDGF--VPNHRTWSILLQS 713
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
LI G +++A A M + PDV YN +I + G A +L M
Sbjct: 359 LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNK 418
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G C P+VY+YTIL+ +CK G
Sbjct: 419 G--CKPNVYSYTILVDGFCKLG 438
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L + G V+ A FYR+ +P++ +N +I+ G + A+ +L M +
Sbjct: 328 LMNGLCKIGRVDAAKDLFYRIP----KPEIVIFNTLIHGFVTHGRLDDAKAVLSDM-VTS 382
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
+ PDV TY LI Y K G+
Sbjct: 383 YGIVPDVCTYNSLIYGYWKEGL 404
>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Glycine max]
Length = 693
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N V+ + M + + + NV +L M RG +V +T++ +++ E+G V AL
Sbjct: 201 NCVSYRVMVVGYCKLGNVLESDRWLGGMIERGF--VVDNATLSLIVREFCEKGFVTRALW 258
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F R + RP++ + +I LC+ G+ +A +LE+M G++ P+VYT+T LI
Sbjct: 259 YFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWK--PNVYTHTALIDG 316
Query: 251 YCKYG 255
CK G
Sbjct: 317 LCKKG 321
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193
TC G+ RG+ VK ++ L+EM RG V T T LI L ++G +A F
Sbjct: 276 TCMIEGLC-KRGS-VKQAFEMLEEMVGRGWKPNVYTHTA--LIDGLCKKGWTEKAFRLFL 331
Query: 194 RM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
++ + +P+V Y +I+ CR N+A LL +M+ G P+ TYT LI +C
Sbjct: 332 KLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGL--APNTNTYTTLIDGHC 389
Query: 253 KYG 255
K G
Sbjct: 390 KAG 392
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 144 RGNNVKGLWDFLK--EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+G + LW F + EM R N TC+I+ L + G V +A M +
Sbjct: 250 KGFVTRALWYFRRFCEMGLRPN-----LINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWK 304
Query: 202 PDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+VY + +I+ LC+ G KA R L+ + + P+V TYT +IS YC+
Sbjct: 305 PNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHK--PNVLTYTAMISGYCR 355
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I + +N A RMK+ P+ Y +I+ C+ GNF +A L+ M
Sbjct: 345 TYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVM 404
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF P+V TY ++ CK G
Sbjct: 405 NEEGF--SPNVCTYNAIVDGLCKKG 427
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
VF R +K F +E R G LV T T T +I EG + AL F+RM
Sbjct: 492 VFCREKRMKESEMFFEEAVRFG---LVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHG 548
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C D Y +I+ LC+ ++AR L + M G P T L YCK
Sbjct: 549 CASDSITYGALISGLCKQSKLDEARCLYDAMIEKGL--TPCEVTRVTLAYEYCK 600
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG T T LI ++ + +AL F +M + +PD+++Y +I CR +
Sbjct: 442 NGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKE 501
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ E E F P TYT +I YC+ G
Sbjct: 502 SEMFFE--EAVRFGLVPTNKTYTSMICGYCREG 532
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 78/192 (40%), Gaps = 32/192 (16%)
Query: 95 LVLGPAAYRNPQKVTL--------GINKATEFYHWV---ERFFHFFHNEVTCKE------ 137
L + P + + Q VT+ G A F++W +F HF + C
Sbjct: 67 LDVDPNSLTHDQAVTIVASLASDAGSMVALSFFNWAIASSKFRHFTRLYIACAASLISNK 126
Query: 138 -----------MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186
M FA VK + + EM +G +T T+ ++K++ E GLV
Sbjct: 127 NFEKAHEVMQCMVKSFAEIGRVKEAIEMVIEMHNQGLAP--STKTLNWVVKIVTEMGLVE 184
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
A F M +P+ +Y V++ C++GN ++ L M GF D T ++
Sbjct: 185 YAENLFDEMCARGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGF--VVDNATLSL 242
Query: 247 LISSYCKYGMQT 258
++ +C+ G T
Sbjct: 243 IVREFCEKGFVT 254
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 18/145 (12%)
Query: 121 WVERFFHFF--------H--NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS 170
W E+ F F H N +T M + R + L M +G T+
Sbjct: 322 WTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAP--NTN 379
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + G A M + P+V YN +++ LC+ G +A +L+
Sbjct: 380 TYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKS- 438
Query: 231 ELPGFR--CPPDVYTYTILISSYCK 253
GFR D TYTILIS +CK
Sbjct: 439 ---GFRNGLDADKVTYTILISEHCK 460
>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
Length = 457
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 4/138 (2%)
Query: 118 FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK 177
F+ W H+ H ++ + V A+ ++ +M G G + T T L++
Sbjct: 3 FFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDM--LGAGCVPNTYTYGYLLR 60
Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
L + EA + F M C P+V++Y+++I LCR ++A LL +M G +
Sbjct: 61 SLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQ- 119
Query: 238 PPDVYTYTILISSYCKYG 255
P+V TY L+S CK G
Sbjct: 120 -PNVVTYGSLLSGLCKMG 136
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
RG V + L EM G+ V T L+ L + G + EA+ F RM C
Sbjct: 97 LCRGQKVDEAAELLNEMIDGGHQPNVVT--YGSLLSGLCKMGKLKEAVDLFSRMVYRGCP 154
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD YNV+I+ + G+ +A L E+M G C P V+TY L+S + + G
Sbjct: 155 PDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKG--CIPTVFTYNSLLSGFSRKG 206
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F+R + K+M R+G + T L+ + G + EA F M+ C
Sbjct: 202 FSRKGEFGRVQSLFKDMLRQGC--VPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCP 259
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV +YN ++ +C G ++A+ LL +M G PD+ +Y ILI Y K G
Sbjct: 260 PDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGV--GPDIVSYNILIDGYSKSG 311
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F++ ++ + +EM +G + T T L+ +G + F M + C
Sbjct: 167 FSKKGDMGEAYRLFEEMLEKGC--IPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCV 224
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+++ +N +++ C++G+ +A L +E+ CPPDV +Y L+ C G
Sbjct: 225 PNIFTFNNLLDGFCKMGDMVEAHRLF--LEMRSLGCPPDVVSYNTLMRGMCSKG 276
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI ++G + EA F M + C P V+ YN +++ R G F + + L + M G
Sbjct: 163 LIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQG 222
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+++T+ L+ +CK G
Sbjct: 223 --CVPNIFTFNNLLDGFCKMG 241
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+EM R G G + + + LI + G ++ A+ FY + + PD ++Y+ +I+
Sbjct: 284 LLREMIRSGVGPDIVSYNI--LIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDC 341
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LCR G A + + M G PD L+ C+
Sbjct: 342 LCRAGKVGAAFVVFKDMIANG--SAPDAAVVIPLVIGLCR 379
>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 638
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
N F+ W + + H+ K M + ++ +W ++EM R+ N +L+
Sbjct: 129 NLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEM-RKENPQLIEPELF 187
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
L++ +V +A+ M F PD Y + +++ALC+ G+ A L E M L
Sbjct: 188 VVLVQRFASADMVKKAIEVLDEMPTFGLEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRL 247
Query: 233 PGFRCPPDVYTYTILISSYCK 253
R P ++ +T L+ +C+
Sbjct: 248 ---RFPVNLRYFTSLLYGWCR 265
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+A + +D LK+M RRG T TV LI+ L + + EA+ F M+++ C
Sbjct: 298 YANAGKMADAYDLLKDMRRRGFEPNATCYTV--LIQALCKVDRMEEAMKVFVEMERYECE 355
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
DV Y +++ C+ G +K +L+ M G P TY +++++ K
Sbjct: 356 ADVVTYTALVSGFCKWGKIDKCYLVLDDMIKKGLM--PSQLTYMHIMAAHEK 405
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ G + +A M++ P+ Y V+I ALC+V +A + +ME
Sbjct: 292 TNLLSGYANAGKMADAYDLLKDMRRRGFEPNATCYTVLIQALCKVDRMEEAMKVFVEME- 350
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+ C DV TYT L+S +CK+G
Sbjct: 351 -RYECEADVVTYTALVSGFCKWG 372
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
E L +MKQ PD+ YNVVI C++G +A L +ME G P T+ I
Sbjct: 411 ECLELMEKMKQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEGNGL--SPGADTFVI 468
Query: 247 LISSYCKYG 255
+I+ G
Sbjct: 469 IINGLTSQG 477
>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 504
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 118 FYHWVE-RFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCL 175
Y W + + HN TC + F R + + FL +M + G+ ++VT + L
Sbjct: 101 IYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGS---L 157
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
+ + +AL F RM + P+V YN +I+ LC+ + A LL +ME+ G
Sbjct: 158 LNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGI 217
Query: 236 RCPPDVYTYTILISSYCKYG 255
R PD TY LIS C G
Sbjct: 218 R--PDAVTYNSLISGLCNSG 235
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI +EG ++EA + M + PD+ Y+++I LC ++A + M
Sbjct: 258 TFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFM 317
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C PDV TY+ILI+ YCK
Sbjct: 318 VSKG--CFPDVVTYSILINGYCK 338
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EMS+RG + T T T LI+ G +N A F M P++ YNV+++ LC
Sbjct: 351 EMSQRG--VVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCD 408
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
G KA +L M+ G D+ TY I+I CK G
Sbjct: 409 NGKIEKALVILADMQKSGM--DADIVTYNIIIRGMCKAG 445
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + G + +AL M++ D+ YN++I +C+ G A L +
Sbjct: 398 TYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSL 457
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQ 257
L G PD++TYT ++ K G++
Sbjct: 458 NLKGL--TPDIWTYTAMMLGLYKKGLR 482
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 142 FARGNNVKG---LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
F RG+ + ++D + EM N + T +I L + V+ AL RM+
Sbjct: 161 FCRGDRIYDALYMFDRMVEMGYEPNVVIYNT-----IIDGLCKSKQVDNALDLLNRMEVD 215
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RPD YN +I+ LC G ++ A ++ M PDV+T+ LI + K G
Sbjct: 216 GIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIY--PDVFTFNALIDACVKEG 270
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L G ++A M + PDV+ +N +I+A + G ++A L E+M
Sbjct: 223 TYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEM 282
Query: 231 ELPGFRCPPDVYTYTILISSYCKY 254
PD+ TY++LI C Y
Sbjct: 283 IRRSL--DPDIVTYSLLIYGLCMY 304
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V + F M Q + Y V+I CR G N A + + M G PP++ TY
Sbjct: 342 VEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGV--PPNIITY 399
Query: 245 TILISSYCKYG 255
+L+ C G
Sbjct: 400 NVLLHGLCDNG 410
>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 418
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + T T LI + G V+ A+ + +M PD+ YN +I LCR G+ +
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQ 294
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
AR L+E+M + G + PD TYT LI CK G
Sbjct: 295 ARDLVEEMIMKGLK--PDKITYTTLIDGSCKEG 325
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+EG + A F + ++ RP V ++N ++N R+G+ ++ L M G + PD
Sbjct: 148 KEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQ--PD 205
Query: 241 VYTYTILISSYCK 253
VYTY++LI+ CK
Sbjct: 206 VYTYSVLINGLCK 218
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++E M +PDVY Y+V+IN LC+ ++A +L +M G P+
Sbjct: 185 GDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGL--VPNGV 242
Query: 243 TYTILISSYCKYG 255
T+T LI +CK G
Sbjct: 243 TFTTLIDGHCKNG 255
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI +EG + RM + R D Y +I+ LCR G A +L +M
Sbjct: 313 TYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREM 372
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + PD TYT++++ +CK G
Sbjct: 373 LTVGLK--PDNGTYTMIMNEFCKTG 395
>gi|259489858|ref|NP_001159344.1| uncharacterized protein LOC100304439 [Zea mays]
gi|223943533|gb|ACN25850.1| unknown [Zea mays]
Length = 322
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
RG G ++ +T + +I G L ++A+ F R+ +F C YN +++ALC GNF
Sbjct: 2 RGLGLPLSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNALLDALCANGNF 61
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A LL +M G PD T++ L+ S+C G
Sbjct: 62 TGAYKLLRRMARKGV--APDRATFSTLVDSWCAAG 94
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
++A E ++ + RF EV + + A GN G + L+ M+R+G +T
Sbjct: 27 DQAVEVFNRLPRFGCPQTTEVYNALLDALCANGN-FTGAYKLLRRMARKGVAP--DRATF 83
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ L+ G + EA A M RP V +++++ L R G+ +A+ +M
Sbjct: 84 STLVDSWCAAGKLQEAQAFLDDMAGRGLRPPVRGRDLLVDGLVRAGHLEQAKAFALRMTK 143
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G PDV T+ L + C G
Sbjct: 144 EGIL--PDVATFNSLAEALCNAG 164
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL +M+ RG V + L+ L G + +A A RM + PDV +N + A
Sbjct: 102 FLDDMAGRGLRPPVRGRDL--LVDGLVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEA 159
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC G+ + A LL G C PD+ TY +++ + K G
Sbjct: 160 LCNAGDVDFAVSLLADASSRGL-C-PDISTYKVMLPAVAKVG 199
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L + S RG ++T V ++ + + G + EA FY + RP Y +I A
Sbjct: 172 LLADASSRGLCPDISTYKV--MLPAVAKVGKIEEAFRLFYAAVEDGHRPFPSLYAAIIKA 229
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G F A M+ G PP+ Y +L+ + G
Sbjct: 230 LCKAGRFADAFAFFGDMKTKGH--PPNRPVYVMLVKMCVRGG 269
>gi|218186396|gb|EEC68823.1| hypothetical protein OsI_37392 [Oryza sativa Indica Group]
Length = 1370
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
RG+ +GL L EM +G L T T LI LG++G + + + F M++ P+
Sbjct: 1009 RGDMGRGLL-LLGEMETKGF--LPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPN 1065
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V YN VI+ALC + +A +L+QM G C PD+ T+ L++ C G
Sbjct: 1066 VQIYNSVIDALCNCRSATQAMVILKQMFASG--CDPDIITFNTLMTGLCHEG 1115
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D L EM RG+ V T LI L G V+EAL +M + + PDV YNV+I+
Sbjct: 1157 DLLVEMMGRGHTPDVVT--FGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLIS 1214
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC+ A+ +LE+M + PD + Y LI + +
Sbjct: 1215 GLCKKRMLPAAKNILEEMLEKNVQ--PDEFVYATLIDGFIR 1253
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 104/261 (39%), Gaps = 35/261 (13%)
Query: 13 CLVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPR---SIGRQ 69
C + L +L + DA LAA+ + +P +A L S + QSP ++
Sbjct: 802 CFKARSLAALLPSPLSDAHLAAAVSSLPDP----DLAVALLS----WSQSPDHHVALQDP 853
Query: 70 TGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLG-----------INKATEF 118
T H T L+ + D + + + + A P + LG + KATE
Sbjct: 854 TPLAHSTLLRLLARSRRFDAVDDTLHSMSLAGA-APTRACLGALVAAYADAGMLGKATEM 912
Query: 119 YHWVERFFHFFHNEVTCKEMGIVFA---RGNNVKGLWDFLKEMSRRGNGELVTTSTVTC- 174
V + C + + R ++ + L+D EM + +G + TC
Sbjct: 913 CERVREQYGSLLEVTHCNHLLKLLVEQRRWDDGRKLYD---EMLGKDSG---ADNYSTCV 966
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L++ L E V E L C P V YNV+I+ CR G+ + LL +ME G
Sbjct: 967 LVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETKG 1026
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F P + TY LI+ K G
Sbjct: 1027 FL--PTLVTYGSLINWLGKKG 1045
>gi|225439604|ref|XP_002265961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
mitochondrial-like [Vitis vinifera]
Length = 505
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 25/184 (13%)
Query: 80 QRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNE---VTCK 136
Q +LK +A NI L +++R I K +++ R ++ N+ V K
Sbjct: 170 QILLKSQAMNIR-----LEESSFRILVAALCRIKK----HNYAIRILNYMLNDGYAVDAK 220
Query: 137 EMGIVFARGNNVKGL-----WDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEAL 189
I+ + KGL F++EM + G V C +I+ L +EG+V +AL
Sbjct: 221 MCSIILSSLCEQKGLSGDEVLRFMEEMRKLG----FYPGRVDCNNVIRFLVKEGMVMDAL 276
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
F +MK +PD +Y +++N + G++ KA L ++M + G PD++ Y + I+
Sbjct: 277 GVFDQMKTDGIKPDTVSYTMILNGVTADGDYEKADDLFDEMLVLGV--VPDIHAYNVYIN 334
Query: 250 SYCK 253
S CK
Sbjct: 335 SLCK 338
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T + T ++ + +G +A F M PD++AYNV IN+LC+ N + +L
Sbjct: 291 TVSYTMILNGVTADGDYEKADDLFDEMLVLGVVPDIHAYNVYINSLCKQNNIEEGVRMLA 350
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
M G C PD TY +L+ K
Sbjct: 351 SMRELG--CKPDYVTYNMLLEGMSK 373
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
T LIKV G + +A+ F+R+ FRC P VY+ N ++ LC+
Sbjct: 117 TNLIKVYGNANMFEDAVDLFFRIPNFRCVPSVYSLNALLYVLCK 160
>gi|297604045|ref|NP_001054898.2| Os05g0207200 [Oryza sativa Japonica Group]
gi|218196267|gb|EEC78694.1| hypothetical protein OsI_18845 [Oryza sativa Indica Group]
gi|222630569|gb|EEE62701.1| hypothetical protein OsJ_17504 [Oryza sativa Japonica Group]
gi|255676129|dbj|BAF16812.2| Os05g0207200 [Oryza sativa Japonica Group]
Length = 467
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 154 FLKEMSRRG--NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
L+EM +G G V S + + +EG ++ A A M++ C+PD +YN ++
Sbjct: 285 LLEEMKEKGIKVGREVHNSMIAGFCE---DEGDLDAAFAALDDMQKGGCKPDSVSYNTLV 341
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC++G + A L+E M P C PDV TY L C G
Sbjct: 342 GGLCKMGRWRDASELVEDM--PRRGCRPDVVTYRRLFDGICDAG 383
>gi|341605761|gb|AEK82983.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RFNGLAINSIFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM +G V + +I L +EG +NE A F M + +P+V Y V+I+
Sbjct: 6 QEMDEKGI--QVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 63
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G+ A LL +M GF+ PDV TY+++++ CK G
Sbjct: 64 KSGSVEDAIXLLHRMIDEGFK--PDVVTYSVVVNGLCKNG 101
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIXLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRFNGLAINSIFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALTKHG 171
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+A + M + + + +++VI LC+ G N+ + E M G + P+V YT+LI
Sbjct: 2 VALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSK--PNVAIYTVLI 59
Query: 249 SSYCKYG 255
Y K G
Sbjct: 60 DGYAKSG 66
>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 855
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 91/217 (41%), Gaps = 32/217 (14%)
Query: 41 NP-FTIESVADVLKSIPRF-FFQSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLG 98
NP + +E+V+ +L+ RF + + GFR ++LK + DN AN
Sbjct: 292 NPGYVVENVSSILR---RFKWGHAAEEALHNFGFRMDAYQANQVLK-QMDNYAN------ 341
Query: 99 PAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEM 158
A F++W++R F H+ T M R + L EM
Sbjct: 342 ----------------ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEM 385
Query: 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
R +G T T LI G + EA+ F +M++ C PD Y +I+ + G
Sbjct: 386 VR--DGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAG 443
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ A + ++M+ G PD +TY+++I+ K G
Sbjct: 444 FLDIAMDMYQRMQEAGLS--PDTFTYSVIINCLGKAG 478
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT + + R N +K + +M G + VT T LI + + G ++ A+
Sbjct: 393 NTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCT---LIDIHAKAGFLDIAM 449
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
+ RM++ PD + Y+V+IN L + G+ A L E+ G C P++ T+ I+I+
Sbjct: 450 DMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLF--CEMVGQGCTPNLVTFNIMIA 507
Query: 250 SYCK 253
+ K
Sbjct: 508 LHAK 511
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 60/160 (37%), Gaps = 6/160 (3%)
Query: 99 PAAYRNPQKVTLGINKATEFYHW---VERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFL 155
P + NP V ++ + W E H F + + V + +N F
Sbjct: 287 PRQHCNPGYVVENVSSILRRFKWGHAAEEALHNFGFRMDAYQANQVLKQMDNYANALGFF 346
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+ R+ G T T ++ LG E M + C+P+ YN +I++
Sbjct: 347 YWLKRQ-PGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYG 405
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R +A + QM+ G C PD TY LI + K G
Sbjct: 406 RANYLKEAMNVFNQMQEAG--CEPDRVTYCTLIDIHAKAG 443
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT M + A+ N + ++M G + VT S V ++VLG G + EA
Sbjct: 498 NLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIV---MEVLGHCGFLEEAE 554
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
F M++ PD Y ++++ + GN +KA + M G R P+V T L+S
Sbjct: 555 GVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLR--PNVPTCNSLLS 612
Query: 250 SYCK 253
++ +
Sbjct: 613 TFLR 616
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 150 GLWDFLKEMSRRGN--GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G D +M +R G T T + +I LG+ G + A F M C P++ +
Sbjct: 443 GFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTF 502
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS--SYCKY 254
N++I + N+ A L M+ GF+ PD TY+I++ +C +
Sbjct: 503 NIMIALHAKARNYETALKLYRDMQNAGFQ--PDKVTYSIVMEVLGHCGF 549
>gi|357431212|gb|AET78283.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431214|gb|AET78284.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431216|gb|AET78285.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431218|gb|AET78286.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431220|gb|AET78287.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431226|gb|AET78290.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431230|gb|AET78292.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431232|gb|AET78293.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431234|gb|AET78294.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431236|gb|AET78295.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431238|gb|AET78296.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431248|gb|AET78301.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431260|gb|AET78307.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431264|gb|AET78309.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431266|gb|AET78310.1| At1g03560-like protein [Arabidopsis halleri]
Length = 161
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ V+ D+ K + R NG + + + LI LG+ G V+EA F M + C D
Sbjct: 53 KNGRVEEALDYFK--TCRFNGLAINSMFYSSLIDGLGKVGRVDEAERLFEEMSEKGCTRD 110
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
Y YN +I+A + G N+A L ++ME C VYTYTILIS
Sbjct: 111 SYCYNALIDAFTKHGKVNEALALFKRMEEEE-GCDQTVYTYTILISG 156
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 45/118 (38%), Gaps = 37/118 (31%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR---------------- 216
T LI + G V +A+ RM +PDV Y+VV+N LC+
Sbjct: 10 TVLIDGYAKSGSVEDAIRLLQRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFKTCRF 69
Query: 217 -------------------VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
VG ++A L E+M G C D Y Y LI ++ K+G
Sbjct: 70 NGLAINSMFYSSLIDGLGKVGRVDEAERLFEEMSEKG--CTRDSYCYNALIDAFTKHG 125
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P+V Y V+I+ + G+ A LL++M GF+ PDV TY+++++ CK G
Sbjct: 3 KPNVAIYTVLIDGYAKSGSVEDAIRLLQRMIDEGFK--PDVVTYSVVVNGLCKNG 55
>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 495
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 19/188 (10%)
Query: 75 RTPLKQRILKK------EADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHF 128
RTP+ R+LK+ E + N ++ G +R+ Q I +A EFY +++
Sbjct: 223 RTPMALRVLKEMVQRGIEPTMVTYNTMLKG--YFRSNQ-----IKEAWEFYLEMKKRKCE 275
Query: 129 FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188
+ VT + F +VK EM + G + +T LI+VL ++ V A
Sbjct: 276 I-DVVTYTTVIHGFGVAGDVKKAKRVFHEMVK--EGVVPNVATYNALIQVLCKKDSVENA 332
Query: 189 LATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
+ F M ++ C P+V YNVVI LC VG+ +A +E+M G R V TY ++
Sbjct: 333 VVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRAC--VQTYNVV 390
Query: 248 ISSYCKYG 255
I +C G
Sbjct: 391 IRYFCDAG 398
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 114 KATEFYHWVERFF-HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
KA +F+ ++R + H+ + + AR + W + M G + T+
Sbjct: 85 KALQFFKHLDRHHPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGP--SPKTL 142
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
L + G + A+ TF M + R D++++N +++ LC+ A LL+ +
Sbjct: 143 AILAERYASNGKPHRAVRTFLSMAEHGIRQDLHSFNTLLDILCKSKRVETAHSLLKTLT- 201
Query: 233 PGFRCPPDVYTYTILISSYC 252
R PD TY IL + YC
Sbjct: 202 --SRFRPDTVTYNILANGYC 219
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V + ++V+ +EM+R G + T +I+ L G + AL RM +
Sbjct: 322 VLCKKDSVENAVVVFEEMAREGVC-VPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGL 380
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
R V YNVVI C G KA + +M C P++ TY +LIS+
Sbjct: 381 RACVQTYNVVIRYFCDAGEVEKALEVFGKM--GDGSCLPNLDTYNVLISA 428
>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
Length = 1060
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
CLI + G ++EAL+ +++ PDV+ Y+++I LC V +A LL++M+
Sbjct: 338 CLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKK 397
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
GF P+ TY LI YCK G
Sbjct: 398 GFL--PNAVTYNTLIDGYCKEG 417
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
+VK + EM G+G L T LI L + + A M F P+++
Sbjct: 278 HVKKALELYXEM--LGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFV 335
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
YN +I+ C+ GN ++A L ++E PDV+TY+ILI C
Sbjct: 336 YNCLIDGYCKAGNLSEALSLHSEIE--KHEILPDVFTYSILIKGLC 379
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LIK L + EA MK+ P+ YN +I+ C+ GN KA + QM
Sbjct: 370 TYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQM 429
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P++ T++ LI YCK G
Sbjct: 430 TEKGIE--PNIITFSTLIDGYCKAG 452
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LI+ L E ++EA + F M+ P++Y YN +++ C++ + KA L
Sbjct: 227 TVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELY 286
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
+M G P+V T+ ILI CK
Sbjct: 287 XEMLGDGLL--PNVVTFGILIDGLCK 310
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+EM ++G L T LI +EG + +A+ +M + P++ ++ +I+
Sbjct: 390 LLQEMKKKGF--LPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDG 447
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ G A L +M + G PDV YT LI + K G
Sbjct: 448 YCKAGKMEAAMGLYTEMVIKGLL--PDVVAYTALIDGHFKDG 487
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVN 186
F N VT + + + N++ + +M+ +G ++T ST LI + G +
Sbjct: 399 FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFST---LIDGYCKAGKME 455
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
A+ + M PDV AY +I+ + GN +A L ++M+ G P+V+T +
Sbjct: 456 AAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLH--PNVFTLSC 513
Query: 247 LISSYCKYG 255
LI CK G
Sbjct: 514 LIDGLCKDG 522
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI E GLV EAL +Y+M P + A N+V++ L + G F+ + M G
Sbjct: 132 LIIAFSEMGLVEEALWVYYKMDVL---PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARG 188
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+V TY LI C+ G
Sbjct: 189 --ASPNVVTYGTLIDGCCRQG 207
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY---------- 193
+ N K + KEM G V T ++CLI L ++G +++A+ F
Sbjct: 485 KDGNTKEAFRLHKEMQEAGLHPNVFT--LSCLIDGLCKDGRISDAIKLFLAKTGTDTTGS 542
Query: 194 ---RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+ + C P+ Y +I LC G KA M G R PDV+T ++I
Sbjct: 543 KTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLR--PDVFTCIVIIQG 600
Query: 251 Y 251
+
Sbjct: 601 H 601
>gi|357162631|ref|XP_003579471.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Brachypodium distachyon]
Length = 544
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 5/135 (3%)
Query: 121 WVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLG 180
W+ R F N + ++ F R + EM R +T T ++K
Sbjct: 154 WMSRL-GFRPNPIDYTDLIFSFCRAGRLPDALHLFDEM--RALKYPLTPHTYAPILKAYC 210
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
G + A A M+ C PDV YN+ I+ LC+VG+F+ ++E+ G+ PD
Sbjct: 211 ASGDIQAADALISSMRLSGCHPDVVIYNIYIHGLCKVGDFDAVERIIEESSRNGW--VPD 268
Query: 241 VYTYTILISSYCKYG 255
TY+ I+ C+ G
Sbjct: 269 AVTYSTFIAGLCRSG 283
>gi|326493764|dbj|BAJ85344.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 82/207 (39%), Gaps = 23/207 (11%)
Query: 67 GRQTGFRHRTP--------LKQRILKKEADNIANNVLVLGPAAYRNPQKVTL-----GIN 113
GRQ GFRH P L L AD + + + G +PQ L
Sbjct: 153 GRQKGFRHCFPAFHALACLLSAAGLPAAADQLPDLIRSHGKPV-SHPQLTLLVRLHTAAR 211
Query: 114 KATEFYHWVERFFHFFHNE----VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTT 169
+ + + RF H F + V + +G + A G V+ EM+ G + +
Sbjct: 212 RPLRALYTLRRFRHEFSVQPQVHVCNRVLGALTAAGY-VEDALKLFDEMAESGIRPMPVS 270
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+ +++ LG+EG L RM+ CRPDV+ Y ++ + R G+ + E+
Sbjct: 271 FAI--IVRALGQEGKPERILEMIGRMRDEVCRPDVFVYTTLVKTMVRRGHMEGCIRVWEE 328
Query: 230 MELPGFRCPPDVYTYTILISSYCKYGM 256
M G PD Y ++ C GM
Sbjct: 329 MGRDGVE--PDSMAYATMVEGLCNAGM 353
>gi|297832366|ref|XP_002884065.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp.
lyrata]
gi|297329905|gb|EFH60324.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp.
lyrata]
Length = 1056
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
TVT +++VL EG V+EAL R++ + DV A N ++ C VG A+ ++M
Sbjct: 273 TVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCAVGKMRVAQRFFQEM 332
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
E G+ P+V TY +LI+ +C GM
Sbjct: 333 ERKGYL--PNVETYNLLIAGFCDVGM 356
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 148 VKGLWDFLKEMSRR---GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
VK D +E RR +G T L+K L + + MK P+
Sbjct: 146 VKEDIDIAREFFRRKMMASGIQGDEYTYGILMKGLCLTNRIGDGFKLLQIMKTCGVAPNT 205
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
YN +++ALC+ G +AR L+ +M+ P+ T+ ILIS+YC
Sbjct: 206 VVYNTLLHALCKNGKVGRARSLMSEMK------EPNDVTFNILISAYC 247
>gi|225470179|ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g55630-like [Vitis vinifera]
Length = 514
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 4/139 (2%)
Query: 117 EFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLI 176
+F+ W + ++ H + +FA + K +W + EM +G VT T LI
Sbjct: 174 KFFMWSGQQENYRHTVNAYHLIMKIFAESDEFKAMWRLVDEMIEQGFP--VTARTFQILI 231
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
GE GL A+ F + K F RP ++YN +++ L + + ++ +QM L +
Sbjct: 232 CTCGEAGLARRAVERFVKSKNFNYRPFKHSYNAILHCLLCLKQYKLVEWVYQQMLLEDY- 290
Query: 237 CPPDVYTYTILISSYCKYG 255
PD+ TY I++ + + G
Sbjct: 291 -SPDILTYNIVMCTKYRLG 308
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ +LG+ AL MK+ P V + +I+ L R GN + ++ ++M
Sbjct: 331 TFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDACKYFFDEM 390
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C PDV YT++I+ Y G
Sbjct: 391 IKLG--CMPDVVCYTVMITGYIVAG 413
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 4/112 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ +GN D L M G V T LI L G ++ F M + C
Sbjct: 338 LLGKGNKPLAALDLLNHMKEVGFDPSVLH--FTTLIDGLSRAGNLDACKYFFDEMIKLGC 395
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
PDV Y V+I G A+ L E+M + G P+V+TY +I C
Sbjct: 396 MPDVVCYTVMITGYIVAGELEMAQGLFEEMTVKG--QLPNVFTYNSMIRGLC 445
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+R N+ F EM + G V TV ++ G + A F M
Sbjct: 374 LSRAGNLDACKYFFDEMIKLGCMPDVVCYTVMITGYIVA--GELEMAQGLFEEMTVKGQL 431
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
P+V+ YN +I LC F +AR +L++ME G C P+ Y L+ +
Sbjct: 432 PNVFTYNSMIRGLCMAEKFEEARSMLKEMESRG--CNPNFLVYNTLVGN 478
>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Cucumis sativus]
Length = 732
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
N V L++M++ G V S V LI L ++ V+EAL M C PDV
Sbjct: 232 NEVDSACSLLRDMTKHG---CVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDV 288
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+N VI+ LC+V + A L+++M L GF PD TY L+ C+ G
Sbjct: 289 QTFNDVIHGLCKVNKIHDATKLVDRMLLRGFY--PDNMTYGFLLHGLCRIG 337
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE + FAR D + EMSRRG V T + L+ L + GL+ EA +
Sbjct: 401 CKEGSLSFAR--------DLVNEMSRRGCEPNVITYAI--LVNGLCKAGLLEEAGLVLHE 450
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
M + YN +I ALCR + A LL +M G C PD++TY LI CK
Sbjct: 451 MSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKG--CKPDLFTYNSLIYGLCK 507
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCRP 202
GN KGL + ++M G G T++C +I L + G V+ A P
Sbjct: 579 GNIEKGL-ELYEQMIMDGLG----ADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVP 633
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
D+ YN V+N LC+VG +A L +++++ G R PD +TY IS CK GM
Sbjct: 634 DIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVR--PDAFTYNTFISWQCKEGM 685
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M F +PD++ YN++++ LC+ G+ + AR L+ +M G C P+V TY IL++ CK
Sbjct: 381 MINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRG--CEPNVITYAILVNGLCKA 438
Query: 255 GM 256
G+
Sbjct: 439 GL 440
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G + T LI L G +AL M C D YN +I A C+VGN K
Sbjct: 524 DGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEK 583
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L EQM + G D + I+I+ CK G
Sbjct: 584 GLELYEQMIMDGL--GADTISCNIMINGLCKVG 614
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 53/135 (39%), Gaps = 37/135 (27%)
Query: 155 LKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EMS RG L S + CLI L + V+ AL M C+PD++ YN +I
Sbjct: 448 LHEMSARG---LTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYG 504
Query: 214 LCRVGNFNKARFLLEQMELPG--------------------------------FR-CPPD 240
LC+V ++A L M L G FR C D
Sbjct: 505 LCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLD 564
Query: 241 VYTYTILISSYCKYG 255
TY LI ++CK G
Sbjct: 565 KITYNGLIKAFCKVG 579
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LIK + G + + L + +M D + N++IN LC+VG + A L G
Sbjct: 571 LIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRG 630
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F PD+ TY +++ CK G
Sbjct: 631 F--VPDIVTYNSVLNGLCKVG 649
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T ++K L V+ A + M + C P+ Y +I+AL + ++A LL
Sbjct: 217 TVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLL 276
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
E+M + G C PDV T+ +I CK
Sbjct: 277 EEMFVMG--CMPDVQTFNDVIHGLCK 300
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
+ ++C M + V ++FL++ RG ++VT ++V + L + G + EAL
Sbjct: 599 DTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSV---LNGLCKVGRIKEAL 655
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
F R++ RPD + YN I+ C+ G N A + GF P T+ +L+
Sbjct: 656 NLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACLFFYRGIENGF--VPSNLTWNVLVY 713
Query: 250 SYCKYGMQ 257
+ K Q
Sbjct: 714 TLLKQSNQ 721
>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 93/207 (44%), Gaps = 16/207 (7%)
Query: 55 IPRFFFQSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINK 114
+P+ F++ IGR P L + I +++L NP+ + +++
Sbjct: 75 LPKPTFRTRTRIGRSHDPNRGKPWSHHRLSTQGQRILDSLL--------NPEFDSSSLDE 126
Query: 115 AT-EFYHWVERFFHFFHNEVTCKEMGI----VFARGNNVKGLWDFLKEMSRRGNGELVTT 169
+ + +F + V+ +GI VF + N + L F +R +++
Sbjct: 127 ILLQLFETSSDGLNFTSDSVSFDILGIIKGLVFYKKNEL-ALCVFYFVRNREDFASILSN 185
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
S V +I VLG+EG + A + + ++ D+YAY +I A G + +A + ++
Sbjct: 186 SVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKK 245
Query: 230 MELPGFRCPPDVYTYTILISSYCKYGM 256
+E G C P + TY ++++ Y K GM
Sbjct: 246 LEEEG--CRPTLITYNVILNVYGKMGM 270
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187
F ++VT + V+ + + + LKEM G + T LI +GL++E
Sbjct: 322 FSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVT--YNSLISAYARDGLLDE 379
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ +M + +PDV+ Y +++ + G + A + E+M + G C P++ T+ L
Sbjct: 380 AMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAG--CQPNICTFNAL 437
Query: 248 ISSYCKYG 255
I + G
Sbjct: 438 IKMHGNRG 445
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
VT + VF + + KEM R G + T LI G ++A+A +
Sbjct: 467 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGF--VPERDTFNTLISAYSRCGFFDQAMAIY 524
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
RM PD+ YN V+ AL R G + ++ +L +M+ RC P+ TY L+ +Y
Sbjct: 525 RRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMK--DGRCKPNELTYCSLLHAYA 582
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 137 EMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196
+MG+ +++ + GL D +K +G T LI L EA F MK
Sbjct: 267 KMGMPWSK---IAGLVDSMK-----SSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMK 318
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD YN +++ + +A +L++ME GF P + TY LIS+Y + G+
Sbjct: 319 AAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGF--APSIVTYNSLISAYARDGL 376
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+PD+ ++N VI A CR G +A + +M+ F PDV TY I+SY M
Sbjct: 708 KPDIISFNTVIFAYCRNGRMKEASRIFAEMK--DFGLAPDVITYNTFIASYASDSM 761
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
VT + +AR + + +M ++G V T T L+ + G + A+ F
Sbjct: 362 VTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFT--YTTLLSGFEKTGKDDYAMKVF 419
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
M+ C+P++ +N +I GNF + + E++++ C PD+ T+ L++ +
Sbjct: 420 EEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKI--CECVPDIVTWNTLLAVFG 477
Query: 253 KYGMQT 258
+ GM +
Sbjct: 478 QNGMDS 483
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LIK+ G G E + F +K C PD+ +N ++ + G ++ + ++M
Sbjct: 433 TFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 492
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ GF P+ T+ LIS+Y + G
Sbjct: 493 KRAGF--VPERDTFNTLISAYSRCG 515
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+++R + + D L+E+ +G ++++ +TV I G + EA F MK F
Sbjct: 685 MYSRTEHFEKSEDILREIIAKGMKPDIISFNTV---IFAYCRNGRMKEASRIFAEMKDFG 741
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDV YN I + F +A +++ M C P+ TY LI +CK
Sbjct: 742 LAPDVITYNTFIASYASDSMFIEAIDVVKYM--IKNECKPNQNTYNSLIDWFCK 793
>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Glycine max]
Length = 461
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 35/173 (20%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F+ W E+ + H+ M A+ + +WD + M ++G ++ T
Sbjct: 61 AFRFFEWAEKQRGYSHSIRAYHLMIESLAKIRQYQIVWDLVSAMRKKG---MLNVETFCI 117
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME--- 231
+++ V+EA+ TF M ++ P++ A+N +++ALC+ N KA+ + + M+
Sbjct: 118 MMRKYARANKVDEAVYTFNVMDKYDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAMKGQF 177
Query: 232 -------------------LPGFR----------CPPDVYTYTILISSYCKYG 255
LP R C PDV TY I++ CK G
Sbjct: 178 VPDEKSYSILLEGWGKAPNLPRAREVFREMVEAGCDPDVVTYGIMVDVLCKAG 230
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 34/145 (23%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V + V + +KEM GN T+ + L+ G E + +A+ TF M +
Sbjct: 225 VLCKAGRVDEAVEVVKEMDV-GNCR-PTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKKGI 282
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPG------------------------FR 236
+ DV AYN +I A C+V F +L++ME G FR
Sbjct: 283 KADVVAYNALIGAFCKVNKFKNVHRVLKEMESNGVAPNSRTCNVIISSMIGQGQTDRAFR 342
Query: 237 --------CPPDVYTYTILISSYCK 253
C PD TYT++I +C+
Sbjct: 343 VFCRMIKLCEPDADTYTMMIKMFCE 367
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ NNV+ + M G+ V + + L++ G+ + A F M + C
Sbjct: 157 LCKSNNVRKAQEIFDAM----KGQFVPDEKSYSILLEGWGKAPNLPRAREVFREMVEAGC 212
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
PDV Y ++++ LC+ G ++A ++++M++ C P + Y++L+ +Y
Sbjct: 213 DPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDVGN--CRPTSFIYSVLVHTY 261
>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 643
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 10/118 (8%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTV---TCLIKVLGEEGLVNEALATFYRMKQ 197
+F + N + +W EM R L STV +I VL +EG + +A M+
Sbjct: 210 LFLKLNQTETVWVLYAEMFR-----LKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMEN 264
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P+V YN VI+ C G AR +L+ M+ G PD YTY LIS CK G
Sbjct: 265 LGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVE--PDSYTYGSLISGMCKGG 320
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+G+ VK + + EM RR L T ST LI L EG ++EA M PD
Sbjct: 354 KGDLVKA-FGYRDEMVRRAI--LPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPD 410
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
YN++IN CR GN KA L ++M G + P + TYT LI
Sbjct: 411 SITYNILINGYCRCGNAKKAFNLHDEMISKGIQ--PTLVTYTSLI 453
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALAT 191
VT + V ++ N +K D +++ R G +L+ LI G ++ A A
Sbjct: 447 VTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIM---FNALIDGHCANGNLDRAFAL 503
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
M + PD YN ++ CR G +AR LL++M+ G R PD +Y LIS Y
Sbjct: 504 LKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIR--PDHISYNTLISGY 561
Query: 252 CKYG 255
K G
Sbjct: 562 SKRG 565
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
V + +K DF+ M G +VT +TV I G V A MK
Sbjct: 245 VLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTV---IHGYCSRGRVEGARMVLDIMKNRG 301
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y Y +I+ +C+ G +A +LE+M+ G P TY LI YC G
Sbjct: 302 VEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLL--PTAVTYNTLIDGYCNKG 355
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
N+ + LKEM +R + VT L++ EG V EA MK+ RPD
Sbjct: 496 NLDRAFALLKEMDKRN----IVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDH 551
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+YN +I+ + G+ N A + ++M GF P + TY LI CK
Sbjct: 552 ISYNTLISGYSKRGDINDAFTIRDEMLSIGFN--PTLLTYNALIQGLCK 598
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R N K ++ EM +G T T T LI VL + + A F ++ +
Sbjct: 421 YCRCGNAKKAFNLHDEMISKGIQP--TLVTYTSLIYVLSKRNRMKAADDLFEKIIREGAS 478
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ +N +I+ C GN ++A LL++M+ PD TY L+ C+ G
Sbjct: 479 PDLIMFNALIDGHCANGNLDRAFALLKEMDKRNI--VPDEVTYNTLMQGRCREG 530
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 150 GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
G+ + +KE+ G L T T LI +G + +A M + P V YN+
Sbjct: 327 GILEKMKEI-----GLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNL 381
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+I+AL G ++A +++ M G PD TY ILI+ YC+ G
Sbjct: 382 LIHALFLEGKMDEADGMIKDMGDSGI--VPDSITYNILINGYCRCG 425
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
+EVT + R V+ + LKEM RRG + ++ +T LI + G +N+A
Sbjct: 515 DEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNT---LISGYSKRGDINDAF 571
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
M P + YN +I LC+ + A LL++M G PD TY LI
Sbjct: 572 TIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGI--TPDDSTYFSLIE 629
Query: 250 SYCK 253
K
Sbjct: 630 GIGK 633
>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLV 185
H F + V+ + F + V + +EMS+RG LV T T T LI+ L + G
Sbjct: 391 HCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRG---LVGNTVTYTTLIQGLFQAGDC 447
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+ A F M P++ YN +++ LC+ G KA + E ++ + P +YTY
Sbjct: 448 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS--KMEPTIYTYN 505
Query: 246 ILISSYCKYG 255
I+I CK G
Sbjct: 506 IMIEGMCKAG 515
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI L +EA+A RM C+PD+ Y VV+N LC+ G+ + A LL
Sbjct: 186 TVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLN 245
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
+ME + P V YT +I CK
Sbjct: 246 KMEQG--KLEPGVLIYTTIIDGLCK 268
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
+LVT V + L + G + A +M+Q + P V Y +I+ LC+ + + A
Sbjct: 220 DLVTYGVV---VNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDAL 276
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L ++ME G R P+V TY+ LIS C YG
Sbjct: 277 NLFKEMETKGIR--PNVVTYSSLISCLCNYG 305
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + G + +A+ F +++ + P +Y YN++I +C+ G L +
Sbjct: 468 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL 527
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L G + PDV Y +IS +C+ G
Sbjct: 528 SLKGVK--PDVVAYNTMISGFCRKG 550
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L + +++AL F M+ RP+V Y+ +I+ LC G ++ A LL M
Sbjct: 260 TTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM-- 317
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+ PDV+T++ LI ++ K G
Sbjct: 318 IERKINPDVFTFSALIDAFVKEG 340
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI +EG + EA + M + P + Y+ +IN C ++A+ + E M
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 387
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C PDV +Y+ LI +CK
Sbjct: 388 --VSKHCFPDVVSYSTLIKGFCK 408
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 19/110 (17%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R + K +D+ +++SR G EL +++A+A F M + R P
Sbjct: 38 RAFSGKTSYDYREKLSRNGLSELK-----------------LDDAVALFGEMVKSRPFPS 80
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ ++ +++A+ ++ F+ L EQM+ G P + YTY+ILI+ +C+
Sbjct: 81 IIEFSKLLSAIAKMNKFDVVISLGEQMQNLGM--PHNHYTYSILINCFCR 128
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T +I+ + + G V + F + +PDV AYN +I+ CR G+ +A L
Sbjct: 500 TIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALF 559
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++M+ G P+ Y LI + + G
Sbjct: 560 KEMKEDG--TLPNSGCYNTLIRARLRDG 585
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ KEM +G +VT S+ LI L G ++A M + + PDV+ ++ +I
Sbjct: 277 NLFKEMETKGIRPNVVTYSS---LISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALI 333
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+A + G +A L ++M P + TY+ LI+ +C +
Sbjct: 334 DAFVKEGKLVEAEKLYDEMVKRSI--DPSIVTYSSLINGFCMH 374
>gi|255685750|gb|ACU28364.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
Length = 178
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G V+EA F M + C D Y YN +I+A + G
Sbjct: 83 RFNGLAINSMFYSSLIDGLGKVGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKV 142
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
N+A L ++ME C VYTYTILIS
Sbjct: 143 NEAVALFKRMEEEE-GCDQTVYTYTILISG 171
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+NE A F M + +P+V Y V+I+ + G+ A LL++M GF+ PDV TY
Sbjct: 2 LNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLQRMIDEGFK--PDVVTY 59
Query: 245 TILISSYCKYG 255
+++++ CK G
Sbjct: 60 SVVVNGLCKNG 70
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ RM +PDV Y+VV+
Sbjct: 6 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLQRMIDEGFKPDVVTYSVVV 63
Query: 212 NALCR-----------------------------------VGNFNKARFLLEQMELPGFR 236
N LC+ VG ++A L E+M G
Sbjct: 64 NGLCKNGRVEEALDYFKTCRFNGLAINSMFYSSLIDGLGKVGRVDEAERLFEEMSEKG-- 121
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI ++ K+G
Sbjct: 122 CTRDSYCYNALIDAFTKHG 140
>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
Length = 432
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 8/137 (5%)
Query: 118 FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLI 176
F ++R FH N VT + + + + L M G +LV T L+
Sbjct: 225 FNEMIDRDFH--PNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVA---YTPLV 279
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
G ++ AL RM C PDV Y VVI+ LC+VG + A + EL +
Sbjct: 280 LGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFR--ELVANK 337
Query: 237 CPPDVYTYTILISSYCK 253
C P+V TY+ LI YC+
Sbjct: 338 CSPNVVTYSALIGGYCR 354
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R + + EM R + LVT S V I L + ++EA RM C
Sbjct: 212 LCRARRLADALEVFNEMIDRDFHPNLVTYSVV---IDGLCKSDQLDEAQQLLDRMVSEGC 268
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RPD+ AY ++ G + A LL +M G C PDV TYT++I CK G
Sbjct: 269 RPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQG--CIPDVVTYTVVIDKLCKVG 321
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF-YRMKQFRC 200
F +++ + L+EM G T + +++ L G V +AL F ++
Sbjct: 35 FCNASDLDAAFSLLREMDVEGMQ--CNDRTTSIILQGLCRCGRVAQALEHFDASLELAHA 92
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+PDV +Y +IN LC++G + A L +M G C P+ +TY L+ CK
Sbjct: 93 QPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAG-GCRPNAFTYNALVDGLCK 144
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT +T L+ L + G V+EALATF +M + P + ++N +I LCR A
Sbjct: 166 DVVTYNT---LMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADAL 222
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ +M F P++ TY+++I CK
Sbjct: 223 EVFNEMIDRDFH--PNLVTYSVVIDGLCK 249
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 173 TCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
T LI L + G V+ A F +M CRP+ + YN +++ LC+ + AR ++ +
Sbjct: 100 TTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEAR 159
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
F PDV TY L+++ + G
Sbjct: 160 KRDF--APDVVTYNTLMAALFQLG 181
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F+ + L+ M +G V T TV +I L + G V++A F + +C
Sbjct: 282 FSAAGRLDSALGLLRRMVSQGCIPDVVTYTV--VIDKLCKVGRVDDAHEIFRELVANKCS 339
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
P+V Y+ +I CR ++ ++ +M C P+V TY +I
Sbjct: 340 PNVVTYSALIGGYCRASRVDEGGKVMREMA-----CRPNVVTYNTMI 381
>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 418
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + G V+ AL + +M + PD+ YN +I LCR G+ +AR L+ +M
Sbjct: 243 TFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEM 302
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G + PD TYT LI CK G
Sbjct: 303 SMKGLK--PDKITYTTLIDGSCKEG 325
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++K D + EMS +G T T LI +EG + A RM + R
Sbjct: 286 LCRKGDLKQARDLIVEMSMKGLKP--DKITYTTLIDGSCKEGDLETAFELRKRMIEESIR 343
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D AY +I+ LC+ G A +L +M G + P+ TYT++I+ +CK G
Sbjct: 344 LDDVAYTALISGLCQEGRAVDAEKMLREMLSVGLK--PENGTYTMIINGFCKQG 395
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193
TC+++ + K +W F KE+ G + L+ +EG + A + F
Sbjct: 103 TCRKVLEHLMKLKYFKLVWGFYKEILECGYP--TSLYFFNILMHRFCKEGEIRLAQSVFD 160
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ + RP V ++N +IN R+G+ +K L M G PDVYT T+LI+ CK
Sbjct: 161 AITKCGLRPSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVH--PDVYTNTVLINGLCK 218
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDVY V+IN LC+ ++A L +M G P+ T+T LI +CK G
Sbjct: 204 PDVYTNTVLINGLCKESKMDEANELFNEMLDKGL--VPNGVTFTTLIDGHCKSG 255
>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rhodocnemis]
Length = 428
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + G V+ A+ + RM PD+ YN +I LC+ G+ +A L+++M
Sbjct: 246 TFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 305
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G + PD +TYT LI CK G
Sbjct: 306 SMKGLK--PDKFTYTTLIDGCCKEG 328
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++K D + EMS +G T T LI +EG ++ A RM Q R
Sbjct: 289 LCKKGDLKQAHDLIDEMSMKGLKP--DKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIR 346
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D AY +I+ LC+ G A +L +M G + PD TYT++I+ +CK G
Sbjct: 347 LDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLK--PDTGTYTMIINEFCKKG 398
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
++G + A + F + ++ RP V +YN ++N R+G+ ++ L M G PD
Sbjct: 151 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVL--PD 208
Query: 241 VYTYTILISSYCK 253
VYTY++LI+ CK
Sbjct: 209 VYTYSVLINGLCK 221
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDVY Y+V+IN LC+ + A L ++M + G P+ T+T LI +CK G
Sbjct: 207 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGL--IPNGVTFTTLIDGHCKNG 258
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L +EG +A M +PD Y ++IN C+ G+ K LL++M+ G
Sbjct: 355 LISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNG 414
Query: 235 FRCPPDVYTYTILISS 250
P V TY +L++
Sbjct: 415 H--APSVVTYNVLMNG 428
>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 841
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
E+ RR +G+LV V +I + ++ VN+A + R PDV+ YN +I+
Sbjct: 319 ELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGF 378
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C VG A L +M PDVYT++IL+ +CK G
Sbjct: 379 CIVGKLKDAIDLFNKMTSKNI--IPDVYTFSILVDGFCKDG 417
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Query: 153 DFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + EM RG +++T +++ + L ++ V++A+ ++K RPD+ Y +++
Sbjct: 529 ELVDEMHYRGQQPDIITYNSI---LDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILV 585
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC+ G AR + E + + G+ DVY YT++I +C G+
Sbjct: 586 KGLCQSGKLEDARKVFEDLLVKGYNL--DVYAYTVMIQGFCDKGL 628
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L + G ++ AL M +PD+ YN +++ALC+ + +KA LL ++
Sbjct: 510 TYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKL 569
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G R PD+ TYTIL+ C+ G
Sbjct: 570 KGQGIR--PDMNTYTILVKGLCQSG 592
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+G G +T T L+K L + G + +A F + DVYAY V+I C G F
Sbjct: 570 KGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLF 629
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A LL +ME G C PD TY I+I S
Sbjct: 630 DEALALLSKMEENG--CIPDAKTYEIIILS 657
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + +A+ F +M PDVY ++++++ C+ GN +A+ +L M + PDV
Sbjct: 382 GKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIK--PDVV 439
Query: 243 TYTILISSYC 252
TY+ L+ YC
Sbjct: 440 TYSSLMDGYC 449
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N V MS RG V + + +I + +V+EA+ F M + PDV
Sbjct: 452 NEVNKAESIFNTMSHRGVTANVQSYNI--MINGFCKIKMVDEAMKLFKEMHHKQIFPDVI 509
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
Y+ +I+ LC+ G + A L+++M G + PD+ TY ++ + CK
Sbjct: 510 TYSSLIDGLCKSGRISYALELVDEMHYRGQQ--PDIITYNSILDALCK 555
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVT---CLIKVLGEEGLVNEALATFYRMKQ 197
F + N+K + L M ++ ++VT S++ CL+ VN+A + F M
Sbjct: 413 FCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNE------VNKAESIFNTMSH 466
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+V +YN++IN C++ ++A L ++M + PDV TY+ LI CK G
Sbjct: 467 RGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHK--QIFPDVITYSSLIDGLCKSG 522
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G AL R +PDV YN +I+ +C+ + N A L E
Sbjct: 304 LINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYS--EKVS 361
Query: 235 FRCPPDVYTYTILISSYCKYG 255
R PDV+TY LIS +C G
Sbjct: 362 KRIFPDVFTYNALISGFCIVG 382
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ ++G + EA M + +PDV Y+ +++ C V NKA + M
Sbjct: 405 TFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTM 464
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
G +V +Y I+I+ +CK M
Sbjct: 465 SHRGV--TANVQSYNIMINGFCKIKM 488
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG T T+T IK +G +++AL ++ D +Y +IN LC+VG
Sbjct: 257 NGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKA 316
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A LL + + G PDV Y +I CK
Sbjct: 317 ALELLRRND--GKLVQPDVVMYNTIIDGMCK 345
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I+ ++GL +EALA +M++ C PD Y ++I +L + A LL +M +
Sbjct: 617 TVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIM 676
Query: 233 PGF 235
G
Sbjct: 677 RGL 679
>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680 [Vitis vinifera]
gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
Length = 592
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 157 EMSRRGNGELVTTS-TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
EM RG LV T T LI G + + + +M + +PDV YN +IN LC
Sbjct: 320 EMCDRG---LVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLC 376
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+VG+ +A+ L+ +M G + PD +TYT+LI CK G
Sbjct: 377 KVGDLREAKKLVIEMTQRGLK--PDKFTYTMLIDGCCKEG 414
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W F +E+ G V V L+ L +E +NEA F + + RP V ++N +I
Sbjct: 210 WAFYEEILDCGYPPDVCKFNV--LMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLI 267
Query: 212 NALCRVGNFNKA----RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N C+ GN ++ RF++E R PDV+TY++LI+ CK G
Sbjct: 268 NGYCKSGNLDQGFRLKRFMMEN------RVFPDVFTYSVLINGLCKEG 309
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 14/178 (7%)
Query: 80 QRILKK--EADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKE 137
Q++L+K + D I N L+ G + ++ + + T+ ++F + + CKE
Sbjct: 354 QQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKE 413
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+++ + KEM + G EL + T LI EG V EA T M +
Sbjct: 414 --------GDLESALEIRKEMVKEGI-ELDNVA-FTALISGFCREGQVIEAERTLREMLE 463
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD Y +VI+ C+ G+ LL++M+ G P V TY +L++ CK G
Sbjct: 464 AGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGH--VPGVVTYNVLLNGLCKQG 519
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCR---PDVYAYNVVINALCRVGNFNKARFL 226
+T T +I ++G V F +K+ +C P V YNV++N LC+ G A L
Sbjct: 471 ATYTMVIHGFCKKGDVKTG---FKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANML 527
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
L+ M G PD TY IL+ +CK+G
Sbjct: 528 LDAMLNLGV--VPDDITYNILLEGHCKHG 554
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 193 YRMKQF----RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+R+K+F R PDV+ Y+V+IN LC+ G + A L +M G P DV T+T LI
Sbjct: 280 FRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGL-VPNDV-TFTTLI 337
Query: 249 SSYCKYG 255
+ +C G
Sbjct: 338 NGHCVTG 344
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L +EG +++A F M P+ + +IN C G + + +QM
Sbjct: 297 TYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQM 356
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + PDV TY LI+ CK G
Sbjct: 357 LRKGVK--PDVITYNTLINGLCKVG 379
>gi|224070831|ref|XP_002303255.1| predicted protein [Populus trichocarpa]
gi|222840687|gb|EEE78234.1| predicted protein [Populus trichocarpa]
Length = 401
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 15/93 (16%)
Query: 168 TTSTVTCLIKVL-------GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
T +V +KVL E VNEA K+F D+++ N+++ ALC GN
Sbjct: 141 TVKSVNAALKVLTGTRDLAAIEAFVNEA------PKKFDIELDIFSVNIIVKALCETGNL 194
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+KA L+ +ME G R PDV TYT L+S++ K
Sbjct: 195 DKAYLLMVEMEKSGVR--PDVITYTTLMSAFYK 225
>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
Length = 439
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F+ W + ++ H+ M A+ + +WD + M N E++
Sbjct: 39 AYRFFEWASKQRNYVHSVRAYHSMIESLAKIRQYQMVWDLVNAMR---NKEILNVEAFCI 95
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++ V EA+ TF M+++ +P+V A+N +++ALC+ N KA+ + + M+
Sbjct: 96 IMRKYARAQKVEEAVYTFNVMEKYNMKPNVAAFNGLLSALCKSKNVRKAQEIFDNMK--- 152
Query: 235 FRCPPDVYTYTILISSY 251
+ PD TY+ILI +
Sbjct: 153 DQFVPDSKTYSILIEGW 169
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 34/154 (22%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+EVT M V + V + +KEM N ++ + L+ G E + +A++
Sbjct: 193 DEVTYSIMVDVLCKAGRVDEAVEIVKEMDY--NNCKPSSFIYSVLVHTYGVENRIEDAVS 250
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG---------------- 234
TF M++ DV AYN +I+A C+ +L+ M+L G
Sbjct: 251 TFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSRTCNIIINSLI 310
Query: 235 -----------FR-----CPPDVYTYTILISSYC 252
FR C PDV +YT++I +C
Sbjct: 311 GRGETDEAFKIFRRMIKVCEPDVDSYTMIIKMFC 344
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 42/132 (31%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFR 199
F + N +K ++ LK+M +G V ++ TC +I L G +EA F RM +
Sbjct: 274 FCKANKMKNVYRVLKDMDLKG----VNPNSRTCNIIINSLIGRGETDEAFKIFRRMIKV- 328
Query: 200 CRPDVYAY-----------------------------------NVVINALCRVGNFNKAR 224
C PDV +Y +V+IN LC++GN +A
Sbjct: 329 CEPDVDSYTMIIKMFCGRKELDMALKIWKYMKKKQFVPSMHTFSVLINGLCQIGNATQAC 388
Query: 225 FLLEQMELPGFR 236
LLE+M G R
Sbjct: 389 VLLEEMIEKGIR 400
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
+ T + LI+ G + +A + M C PD Y+++++ LC+ G ++A +++
Sbjct: 159 SKTYSILIEGWGRAPNLPKAREIYREMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVK 218
Query: 229 QMELPGFRCPPDVYTYTILISSY 251
+M+ C P + Y++L+ +Y
Sbjct: 219 EMDYNN--CKPSSFIYSVLVHTY 239
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R N+ + +EM +G + T + ++ VL + G V+EA+ M C+
Sbjct: 169 WGRAPNLPKAREIYREMI--DSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNCK 226
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P + Y+V+++ A +ME G DV Y LIS++CK
Sbjct: 227 PSSFIYSVLVHTYGVENRIEDAVSTFLEMERNGVM--ADVAAYNALISAFCK 276
>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
Length = 559
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 157 EMSRRGNGELVTTS-TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
EM RG LV T T LI G + + + +M + +PDV YN +IN LC
Sbjct: 320 EMCDRG---LVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLC 376
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+VG+ +A+ L+ +M G + PD +TYT+LI CK G
Sbjct: 377 KVGDLREAKKLVIEMTQRGLK--PDKFTYTMLIDGCCKEG 414
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W F +E+ G V V L+ L +E +NEA F + + RP V ++N +I
Sbjct: 210 WAFYEEILDCGYPPDVCKFNV--LMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLI 267
Query: 212 NALCRVGNFNKA----RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N C+ GN ++ RF++E R PDV+TY++LI+ CK G
Sbjct: 268 NGYCKSGNLDQGFRLKRFMMEN------RVFPDVFTYSVLINGLCKEG 309
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 14/178 (7%)
Query: 80 QRILKK--EADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKE 137
Q++L+K + D I N L+ G + ++ + + T+ ++F + + CKE
Sbjct: 354 QQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKE 413
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+++ + KEM + G EL + T LI EG V EA T M +
Sbjct: 414 --------GDLESALEIRKEMVKEGI-ELDNVA-FTALISGFCREGQVIEAERTLREMLE 463
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD Y +VI+ C+ G+ LL++M+ G P V TY +L++ CK G
Sbjct: 464 AGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGH--VPGVVTYNVLLNGLCKQG 519
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 193 YRMKQF----RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+R+K+F R PDV+ Y+V+IN LC+ G + A L +M G P DV T+T LI
Sbjct: 280 FRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGL-VPNDV-TFTTLI 337
Query: 249 SSYCKYG 255
+ +C G
Sbjct: 338 NGHCVTG 344
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L +EG +++A F M P+ + +IN C G + + +QM
Sbjct: 297 TYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQM 356
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + PDV TY LI+ CK G
Sbjct: 357 LRKGVK--PDVITYNTLINGLCKVG 379
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCR---PDVYAYNVVINALCRVGNFNKARFL 226
+T T +I ++G V F +K+ +C P V YNV++N LC+ G A L
Sbjct: 471 ATYTMVIHGFCKKGDVKTG---FKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANML 527
Query: 227 LEQMELPGFRCPPDVYTYTILI 248
L+ M G PD TY IL+
Sbjct: 528 LDAMLNLGV--VPDDITYNILL 547
>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Cucumis sativus]
Length = 732
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
N V L++M++ G V S V LI L ++ V+EAL M C PDV
Sbjct: 232 NEVDSACSLLRDMTKHG---CVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDV 288
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+N VI+ LC+V + A L+++M L GF PD TY L+ C+ G
Sbjct: 289 QTFNDVIHGLCKVNKIHDATKLVDRMLLRGFY--PDNMTYGFLLHGLCRIG 337
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE + FAR D + EMSRRG V T + L+ L + GL+ EA +
Sbjct: 401 CKEGSLSFAR--------DLVNEMSRRGCEPNVITYAI--LVNGLCKAGLLEEAGLVLHE 450
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
M + YN +I ALCR + A LL +M G C PD++TY LI CK
Sbjct: 451 MSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKG--CKPDLFTYNSLIYGLCK 507
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCRP 202
GN KGL + ++M G G T++C +I L + G V+ A P
Sbjct: 579 GNIEKGL-ELYEQMIMDGLG----ADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVP 633
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
D+ YN V+N LC+VG +A L +++++ G R PD +TY IS CK GM
Sbjct: 634 DIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVR--PDAFTYNTFISWQCKEGM 685
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M F +PD++ YN++++ LC+ G+ + AR L+ +M G C P+V TY IL++ CK
Sbjct: 381 MINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRG--CEPNVITYAILVNGLCKA 438
Query: 255 GM 256
G+
Sbjct: 439 GL 440
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G + T LI L G +AL M C D YN +I A C+VGN K
Sbjct: 524 DGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEK 583
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L EQM + G D + I+I+ CK G
Sbjct: 584 GLELYEQMIMDGL--GADTISCNIMINGLCKVG 614
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 53/135 (39%), Gaps = 37/135 (27%)
Query: 155 LKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EMS RG L S + CLI L + V+ AL M C+PD++ YN +I
Sbjct: 448 LHEMSARG---LTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYG 504
Query: 214 LCRVGNFNKARFLLEQMELPG--------------------------------FR-CPPD 240
LC+V ++A L M L G FR C D
Sbjct: 505 LCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLD 564
Query: 241 VYTYTILISSYCKYG 255
TY LI ++CK G
Sbjct: 565 KITYNGLIKAFCKVG 579
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LIK + G + + L + +M D + N++IN LC+VG + A L G
Sbjct: 571 LIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRG 630
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F PD+ TY +++ CK G
Sbjct: 631 F--VPDIVTYNSVLNGLCKVG 649
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T ++K L V+ A + M + C P+ Y +I+AL + ++A LL
Sbjct: 217 TVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLL 276
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
E+M + G C PDV T+ +I CK
Sbjct: 277 EEMFVMG--CMPDVQTFNDVIHGLCK 300
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
+ ++C M + V ++FL++ RG ++VT ++V + L + G + EAL
Sbjct: 599 DTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSV---LNGLCKVGRIKEAL 655
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILI 248
F R++ RPD + YN I+ C+ G N A F +E GF P T+ +L+
Sbjct: 656 NLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACSFFYRGIE-NGF--VPSNLTWNVLV 712
Query: 249 SSYCKYGMQ 257
+ K Q
Sbjct: 713 YTLLKQSNQ 721
>gi|85000739|ref|XP_955088.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303234|emb|CAI75612.1| hypothetical protein, conserved [Theileria annulata]
Length = 559
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFR 199
+ N+V ++M RG V +T+ T LIK G+ +++A+ F M+Q
Sbjct: 185 YVNNNSVDSAMRLFEDMKERGK---VKPNTIMYTTLIKGYGQNKQLDKAMRIFRLMQQDG 241
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P+ YN +I+A RVG A LLE+M G PD+ T++ +I YC
Sbjct: 242 VEPNTVTYNSIIDACARVGEMGSATRLLEEMLSSGIE--PDLITFSTIIKGYC 292
>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
turbinata]
Length = 413
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + G V+ A+ + RM PD+ YN +I LC+ G+ +A L+++M
Sbjct: 231 TFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEM 290
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G + PD +TYT LI CK G
Sbjct: 291 SMKGLK--PDKFTYTTLIDGCCKEG 313
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++K D + EMS +G T T LI +EG ++ A RM Q R
Sbjct: 274 LCKNGDLKQAHDLIDEMSMKGLKP--DKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIR 331
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D AY +I+ LC+ G A +L +M G + PD+ TYT++I+ +CK G
Sbjct: 332 LDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLK--PDIGTYTMIINEFCKKG 383
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193
TC++M + K +W F +E+ G + L+ ++G + A + F
Sbjct: 91 TCRKMLEHLMKLRYFKLVWGFYEEILECGYP--ASLYFFNILMHRFCKDGDIRVAQSVFD 148
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ ++ RP V +YN ++N R+G+ ++ L M G + PDVYTY++LI+ CK
Sbjct: 149 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQ--PDVYTYSVLINGLCK 206
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PDVY Y+V+IN LC+ + A L ++M + G P+ T+T LI +CK G
Sbjct: 191 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGL--IPNGVTFTTLIDGHCKNG 243
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI L +EG +A M +PD+ Y ++IN C+ G+ K LL++M+
Sbjct: 338 TALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQR 397
Query: 233 PGFRCPPDVYTYTILISS 250
G P V TY +L++
Sbjct: 398 NGH--APSVVTYNVLMNG 413
>gi|14488297|gb|AAK63878.1|AC074105_7 Putative salt-inducible protein [Oryza sativa]
gi|222612440|gb|EEE50572.1| hypothetical protein OsJ_30721 [Oryza sativa Japonica Group]
Length = 854
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N T + F R NV ++M R +G + T LI EG +N A
Sbjct: 575 NNFTYNSLISAFCRAGNVSEALKLEQKM--RQSGLVPDIFTRNILIDGFCREGGLNTANN 632
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F+ M PDV YN ++NA CR + N A + +M G C PD++TY I + S
Sbjct: 633 LFFGMYSIGLTPDVVTYNTMLNAYCRSKDINGAMIFMNKMLADG--CEPDIFTYNIWMHS 690
Query: 251 YCK 253
C
Sbjct: 691 LCS 693
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 157 EMSRRGNGELVTTS-TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
EM RRG LV + T LI G V+EAL +M+Q PD++ N++I+ C
Sbjct: 566 EMIRRG---LVPNNFTYNSLISAFCRAGNVSEALKLEQKMRQSGLVPDIFTRNILIDGFC 622
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
R G N A L M G PDV TY ++++YC+
Sbjct: 623 REGGLNTANNLFFGMYSIGL--TPDVVTYNTMLNAYCR 658
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
RG V+ W +EM+ RG + +I L GLV + M +F PD
Sbjct: 203 RGGEVRAAWKVFEEMAARG--PRPNLAIFNAMIFGLCHRGLVRVSGGLLGVMGRFHVVPD 260
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+YN+++ C G A L ++M + G C P + TY IL++ C+ G
Sbjct: 261 ACSYNILMKGHCLYGQAEDAFNLFDEMRVTG--CCPTIVTYNILMNELCREG 310
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA F M + P+ + YN +I+A CR GN ++A L ++M G PD++T
Sbjct: 557 LDEAYNGFIEMIRRGLVPNNFTYNSLISAFCRAGNVSEALKLEQKMRQSGL--VPDIFTR 614
Query: 245 TILISSYCKYG 255
ILI +C+ G
Sbjct: 615 NILIDGFCREG 625
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +A F M+ C P + YN+++N LCR G +AR L ++M G +
Sbjct: 275 GQAEDAFNLFDEMRVTGCCPTIVTYNILMNELCREGRMVEARMLFDEMLQAGVEV--NTI 332
Query: 243 TYTILISSYCKYG 255
T+ +LI Y K G
Sbjct: 333 TFNVLIDGYAKAG 345
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+N A+ +M C PD++ YN+ +++LC N+A LL+ EL C P+ TY
Sbjct: 662 INGAMIFMNKMLADGCEPDIFTYNIWMHSLCSNHLLNRAMMLLD--ELAATDCAPNSVTY 719
Query: 245 TILISSYCK 253
L+ C
Sbjct: 720 NTLMDGICS 728
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 16/163 (9%)
Query: 96 VLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFAR---GNNVKGLW 152
+L AY+ KA F ++ F ++++ + ++ R + W
Sbjct: 371 ILSAGAYK--------FGKAALFVLDQQQLHEMFGSQLSTDGIDMLICRLCWDGRLDDAW 422
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ L +G V+ S LI +EG EA + M + P N +I
Sbjct: 423 ELLCSAIEKG--VQVSVSGFNALIAAYSKEGFDEEAFELYKTMNKLGLAPSSSTLNYLIM 480
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC G ++AR LE M G+ C + ++TI + S + G
Sbjct: 481 GLCNRGRLDQARLFLEYMVRMGY-CV--IASFTIYLDSSFRAG 520
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL+ M R G ++ T + G V AL + MK +PD A++ +N
Sbjct: 494 FLEYMVRMG---YCVIASFTIYLDSSFRAGDVLGALKCWDDMKIVGLQPDFVAFSAYVNG 550
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LCR+ ++A +M G P+ +TY LIS++C+ G
Sbjct: 551 LCRLDFLDEAYNGFIEMIRRGL--VPNNFTYNSLISAFCRAG 590
>gi|341605763|gb|AEK82984.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G ++EA F M + C D Y YN +I+AL + G
Sbjct: 114 RFNGLAINSIFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALXKHGKV 173
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 174 DEAMTLFKRMEEEE-GCDQTVYTYTILISG 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM +G V + +I L +EG +NE A F M + +P+V Y V+I+
Sbjct: 6 QEMDEKGI--QVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 63
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G+ A LL +M GF+ PDV TY+++++ CK G
Sbjct: 64 KSGSVEDAIRLLHRMIDEGFK--PDVVTYSVVVNGLCKNG 101
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+
Sbjct: 37 YAVFENMIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVV 94
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 95 NGLCKNGRVEEALDYFQTCRFNGLAINSIFYSSLIDGLGKAGRIDEAERLFEEMSEKG-- 152
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI + K+G
Sbjct: 153 CTRDSYCYNALIDALXKHG 171
>gi|147858028|emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera]
Length = 1051
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ LG G +++ MK+ R +PDV YN++IN LC+ G +A +L +M++ G
Sbjct: 629 LMSDLGRRGRIDDXKTLLLEMKRRRFKPDVVTYNILINXLCKEGRAXEAYKVLVEMQVGG 688
Query: 235 FRCPPDVYTYTILISSYCK 253
C P+ TY +++ +C+
Sbjct: 689 --CEPNAATYRMMVDGFCQ 705
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQF 198
+ +G KG WD ++ + V + VT LI L +G ++ A+ M Q
Sbjct: 523 IIIKGWLGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDLDGAMGLLZDMIQK 582
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R RP+ Y +++ LC +G + +A+ ++ M+ G C P + + +L+S + G
Sbjct: 583 RHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQG--CKPRLLNFGVLMSDLGRRG 637
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+G + +G+ + G L++M ++ + T L++ L G EA + M
Sbjct: 560 IGFLCGKGD-LDGAMGLLZDMIQKRHRP--NAVTYALLMEGLCSLGKYKEAKKMMFDMDY 616
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+P + + V+++ L R G + + LL +M+ F+ PDV TY ILI+ CK G
Sbjct: 617 QGCKPRLLNFGVLMSDLGRRGRIDDXKTLLLEMKRRRFK--PDVVTYNILINXLCKEG 672
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM RR V T + LI L +EG EA M+ C P+ Y ++++
Sbjct: 645 LLLEMKRRRFKPDVVTYNI--LINXLCKEGRAXEAYKVLVEMQVGGCEPNAATYRMMVDG 702
Query: 214 LCRVGNFNKARFLLEQMELPGFRCP 238
C+V +F +L M + G CP
Sbjct: 703 FCQVEDFEGGLKVLSAMLMCG-HCP 726
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 142 FARGNN---VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
AR N V+ L D+L+ ++ R + LI+ G+ + +A+ F RM F
Sbjct: 423 LARSRNFEAVETLLDYLQNINIR-----CRETLFIALIQHYGKSQMPEKAIELFQRMPSF 477
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C + ++N ++N L + F A + ++ GFR + ++ I+I + G
Sbjct: 478 NCHRTIVSFNTLLNVLVEIDRFLDAIGIFDRSTKMGFR--RNSISFNIIIKGWLGKG 532
>gi|449441228|ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400,
mitochondrial-like [Cucumis sativus]
gi|449499186|ref|XP_004160743.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400,
mitochondrial-like [Cucumis sativus]
Length = 482
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R N V G D L++M +G + T + L+ L + + EA RMK C
Sbjct: 257 LCRKNQVNGAVDLLEDMLNKGY--IPDTLSYATLLNSLCRKKKLREAYKLLCRMKVKGCN 314
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD+ YN VI CR G A +LE M+ G C P++ +Y L + C GM
Sbjct: 315 PDIAHYNTVIMGFCREGRALDACKILEDMQSNG--CLPNLVSYESLTNGLCDQGM 367
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+ I+ + N ++ +D K + R +G L T + LI+ G ++ A F +M +
Sbjct: 183 LEILVSHRNFIRPAFDLFK--NARHHGVLPNTKSYNILIRAFCWNGNISIAYTLFNKMFE 240
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDV Y ++ LCR N A LLE M G+ PD +Y L++S C+
Sbjct: 241 RNVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGY--IPDTLSYATLLNSLCR 294
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF- 225
VT + + +IK+ GE L ++AL FY M F C P N ++ L NF + F
Sbjct: 139 VTPTAFSYIIKIYGEADLPDKALKVFYTMIDFGCTPSSKQLNRILEILVSHRNFIRPAFD 198
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L + G P+ +Y ILI ++C G
Sbjct: 199 LFKNARHHGVL--PNTKSYNILIRAFCWNG 226
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L++ L + VN A+ M PD +Y ++N+LCR +A LL +M
Sbjct: 249 TYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLREAYKLLCRM 308
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
++ G C PD+ Y +I +C+ G
Sbjct: 309 KVKG--CNPDIAHYNTVIMGFCREG 331
>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
Length = 948
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
CLI + G ++EAL+ +++ PDV+ Y+++I LC V +A LL++M+
Sbjct: 338 CLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKK 397
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
GF P+ TY LI YCK G
Sbjct: 398 GFL--PNAVTYNTLIDGYCKEG 417
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + +VK + +EM G+G L T LI L + + A M F
Sbjct: 273 YCKIAHVKKALELYQEM--LGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVV 330
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P+++ YN +I+ C+ GN ++A L ++E PDV+TY+ILI C
Sbjct: 331 PNIFVYNCLIDGYCKAGNLSEALSLHSEIE--KHEILPDVFTYSILIKGLC 379
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LI+ L E ++EA + F M+ P++Y YN +++ C++ + KA L
Sbjct: 227 TVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELY 286
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++M G P+V T+ ILI CK
Sbjct: 287 QEMLGDGLL--PNVVTFGILIDGLCK 310
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LIK L + EA MK+ P+ YN +I+ C+ GN KA + QM
Sbjct: 370 TYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQM 429
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P++ T++ LI YCK G
Sbjct: 430 TEKGIE--PNIITFSTLIDGYCKAG 452
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+EM ++G L T LI +EG + +A+ +M + P++ ++ +I+
Sbjct: 390 LLQEMKKKGF--LPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDG 447
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ G A L +M + G PDV YT LI + K G
Sbjct: 448 YCKAGKMEAAMGLYTEMVIKGLL--PDVVAYTALIDGHFKDG 487
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVN 186
F N VT + + + N++ + +M+ +G ++T ST LI + G +
Sbjct: 399 FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFST---LIDGYCKAGKME 455
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
A+ + M PDV AY +I+ + GN +A L ++M+ G P+V+T +
Sbjct: 456 AAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLH--PNVFTLSC 513
Query: 247 LISSYCKYG 255
LI CK G
Sbjct: 514 LIDGLCKDG 522
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI E GLV EAL +Y+M P + A N+V++ L + G F+ + M G
Sbjct: 132 LIIAFSEMGLVEEALWVYYKMDVL---PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARG 188
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+V TY LI C+ G
Sbjct: 189 --ASPNVVTYGTLIDGCCRQG 207
>gi|242051268|ref|XP_002463378.1| hypothetical protein SORBIDRAFT_02g042720 [Sorghum bicolor]
gi|241926755|gb|EER99899.1| hypothetical protein SORBIDRAFT_02g042720 [Sorghum bicolor]
Length = 782
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 61/156 (39%), Gaps = 27/156 (17%)
Query: 126 FHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEM----------SRRGNGELVTTSTVTCL 175
F + EVT K + R N + D L+ M S GE T
Sbjct: 310 FGYRLREVTYKVLVDELCRENELAKAKDVLELMLQPTVQCGQDSSGDAGEETRTRLYNVF 369
Query: 176 IKVLGEEGLV----------------NEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
+ LGEE +E L M Q C+PDV N VI+ C+ G
Sbjct: 370 LGALGEETRTRIYNVFLGALRVVDNPSEQLGVLVSMLQAGCKPDVITMNTVIHGFCKSGR 429
Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+AR +++ M L G C PDV T+T LIS Y G
Sbjct: 430 TQEARRIMDDM-LSGKFCAPDVVTFTTLISGYLGAG 464
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYR-MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T T LI G EAL + M + RC P V YN V+ L +G + A +LE+
Sbjct: 452 TFTTLISGYLGAGDHAEALDVLHNLMPRRRCSPTVVTYNCVLKGLFGIGQVDTAMQVLEE 511
Query: 230 MELPGFRCPPDVYTYTILISSYCKYGM 256
M + D TYT++I C G+
Sbjct: 512 MS--ANKIVADSVTYTVVIKGLCDAGL 536
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR-PDVYAYNVVINALCRVGNFNKARF 225
VT + L++ L EG + M Q RC D +AY+ +I++LCR G + A
Sbjct: 205 VTNAAFANLVQCLCAEGFFHVVFRVAEEMPQRRCGVGDDFAYSQMIDSLCRAGQHHGASR 264
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYC 252
++ M G R P DV +Y ++ C
Sbjct: 265 IVYIMRKRGMR-PSDV-SYNCIVHGLC 289
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T C++K L G V+ A+ M + D Y VVI LC G KA+
Sbjct: 485 TVVTYNCVLKGLFGIGQVDTAMQVLEEMSANKIVADSVTYTVVIKGLCDAGLLEKAKEFW 544
Query: 228 EQMELP-GFRCPPDVYTYTILISSYCK 253
+ + P G D Y Y+ + CK
Sbjct: 545 DNVVWPSGIH---DDYVYSAIFKGLCK 568
>gi|297849070|ref|XP_002892416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338258|gb|EFH68675.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 459
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ LG+ G ++EA MK+ R +PD YN+++N LC G +A L +M++ G
Sbjct: 297 LMSDLGKRGKIDEAKILLGEMKKRRIKPDFVIYNILVNHLCTEGRVPEAYRTLTEMQMKG 356
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P+ TY +++ +C+ G
Sbjct: 357 --CKPNAATYRMIVDGFCRIG 375
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+K L G NEA + M+ C+P + Y V+++ L + G ++A+ LL +M
Sbjct: 258 TFGLLMKGLCCNGEYNEAKKLMFDMEYRGCKPGLVNYGVLMSDLGKRGKIDEAKILLGEM 317
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ R PD Y IL++ C G
Sbjct: 318 K--KRRIKPDFVIYNILVNHLCTEG 340
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L EG V EA T M+ C+P+ Y ++++ CR+G+F+ +L M
Sbjct: 332 LVNHLCTEGRVPEAYRTLTEMQMKGCKPNAATYRMIVDGFCRIGDFDSGLNVLNAM--LA 389
Query: 235 FRCPPDVYTYTILISSYCKYG 255
R P T+ ++S K G
Sbjct: 390 SRHSPTPATFVRMVSGLIKGG 410
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 24/205 (11%)
Query: 68 RQTGFRHRTPLKQRILKKEADNIANNVL--VLGPAAYRN---PQKVTLGINKATEFYHWV 122
++ GFRH P ++ K A + + + +L YRN + + + + + WV
Sbjct: 73 QEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMALIQHYGKAGWV 132
Query: 123 ERFFHFFHNEVT--CKE--------MGIVFARGN--NVKGLWDFLKEMSRRGNGELVTTS 170
++ FH + C + ++ G K +D K+M R N +
Sbjct: 133 DKAVDVFHKLTSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRPN-----SV 187
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ LIK ++ A F M + +P V YN +I LCR + KA LLE M
Sbjct: 188 SFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNNDMGKATSLLEDM 247
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
R P+ T+ +L+ C G
Sbjct: 248 IKKRIR--PNAVTFGLLMKGLCCNG 270
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + +A + M + R RP+ + +++ LC G +N+A+ L+ M
Sbjct: 223 TYNSLIGFLCRNNDMGKATSLLEDMIKKRIRPNAVTFGLLMKGLCCNGEYNEAKKLMFDM 282
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G C P + Y +L+S K G
Sbjct: 283 EYRG--CKPGLVNYGVLMSDLGKRG 305
>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g31850, chloroplastic; AltName: Full=Protein PROTON
GRADIENT REGULATION 3; Flags: Precursor
gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
Length = 1112
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
++ + LKEM G V T T+ I+VLG G +NEA RM C PDV
Sbjct: 238 DIDSVMGLLKEMETLGLKPNVYTFTIC--IRVLGRAGKINEAYEILKRMDDEGCGPDVVT 295
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
Y V+I+ALC + A+ + E+M+ R PD TY L+ +
Sbjct: 296 YTVLIDALCTARKLDCAKEVFEKMKTG--RHKPDRVTYITLLDRF 338
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ LG+ ++ + M+ +P+VY + + I L R G N+A +L++M
Sbjct: 225 TYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRM 284
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
+ G C PDV TYT+LI + C
Sbjct: 285 DDEG--CGPDVVTYTVLIDALC 304
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LI L + G + EA F M + CRP+ YN++IN + G + A L
Sbjct: 890 TACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALF 949
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++M G R PD+ TY++L+ C G
Sbjct: 950 KRMVKEGVR--PDLKTYSVLVDCLCMVG 975
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+ VT M +++ + L EM NG V LI L + V+EA
Sbjct: 502 DSVTYNMMMKCYSKVGEIDEAIKLLSEMME--NGCEPDVIVVNSLINTLYKADRVDEAWK 559
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F RMK+ + +P V YN ++ L + G +A L E M G CPP+ T+ L
Sbjct: 560 MFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG--CPPNTITFNTLFDC 617
Query: 251 YCK 253
CK
Sbjct: 618 LCK 620
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G+ G + A A F RM + RPD+ Y+V+++ LC VG ++ ++++ G
Sbjct: 932 LINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESG 991
Query: 235 FRCPPDVYTYTILISSYCK 253
PDV Y ++I+ K
Sbjct: 992 LN--PDVVCYNLIINGLGK 1008
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L+ LG+ G + EA+ F M Q C P+ +N + + LC+ A +L
Sbjct: 572 TVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKML 631
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M G C PDV+TY +I K G
Sbjct: 632 FKMMDMG--CVPDVFTYNTIIFGLVKNG 657
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + K M + G + T +V L+ L G V+E L F +K+
Sbjct: 936 FGKAGEADAACALFKRMVKEGVRPDLKTYSV--LVDCLCMVGRVDEGLHYFKELKESGLN 993
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PDV YN++IN L + +A L +M+ PD+YTY LI + GM
Sbjct: 994 PDVVCYNLIINGLGKSHRLEEALVLFNEMK-TSRGITPDLYTYNSLILNLGIAGM 1047
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 39/143 (27%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V R + ++ LK M G G V T TV LI L ++ A F +MK R
Sbjct: 267 VLGRAGKINEAYEILKRMDDEGCGPDVVTYTV--LIDALCTARKLDCAKEVFEKMKTGRH 324
Query: 201 RPD-----------------------------------VYAYNVVINALCRVGNFNKARF 225
+PD V + ++++ALC+ GNF +A
Sbjct: 325 KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFD 384
Query: 226 LLEQMELPGFRCPPDVYTYTILI 248
L+ M G P+++TY LI
Sbjct: 385 TLDVMRDQGIL--PNLHTYNTLI 405
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV--LGEEGLVNEALATFYRMKQFRCRP 202
G++V L F K M +G + + V C + L + G EA FY +K P
Sbjct: 447 GDSVSALETFEK-MKTKG----IAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVP 501
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
D YN+++ +VG ++A LL +M G C PDV LI++ K
Sbjct: 502 DSVTYNMMMKCYSKVGEIDEAIKLLSEMMENG--CEPDVIVVNSLINTLYK 550
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDVYAYNVVI 211
+ KE+ G N ++V + + I LG+ + EAL F MK R PD+Y YN +I
Sbjct: 983 YFKELKESGLNPDVVCYNLI---INGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLI 1039
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L G +A + +++ G P+V+T+ LI Y G
Sbjct: 1040 LNLGIAGMVEEAGKIYNEIQRAGLE--PNVFTFNALIRGYSLSG 1081
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L E ++ A F ++K C PDV YN +++A + G ++ L ++M
Sbjct: 787 TYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEM 846
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
C + T+ I+IS K G
Sbjct: 847 ST--HECEANTITHNIVISGLVKAG 869
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T I G+ G AL TF +MK P++ A N + +L + G +A+ +
Sbjct: 432 TAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIF 491
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++ G PD TY +++ Y K G
Sbjct: 492 YGLKDIGL--VPDSVTYNMMMKCYSKVG 517
Score = 37.0 bits (84), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T L L + V AL ++M C PDV+ YN +I L + G +A
Sbjct: 608 TITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFH 667
Query: 229 QME 231
QM+
Sbjct: 668 QMK 670
>gi|414865543|tpg|DAA44100.1| TPA: hypothetical protein ZEAMMB73_135273 [Zea mays]
Length = 542
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W L M G T + T ++ ++G V EA M Q C PDV +Y+V+I
Sbjct: 169 WGVLDSMLEVGVCP--TVRSYTAILHGYCKQGRVLEAERLLDTMIQVGCAPDVISYSVLI 226
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LCRVG F K +L + E G+ P+ TY I +S+ C+ G
Sbjct: 227 QGLCRVGEFGKVERILGESEAKGW--TPNAVTYNIYMSALCRMG 268
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L S +G TTS T L+K + + A F M C PD YN +I L
Sbjct: 100 LDAFSLLASGIGPTTSAFTALLKSIDAASSESVYRAFFATMAAMECAPDAATYNCLIWIL 159
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C ++A +L+ M G P V +YT ++ YCK G
Sbjct: 160 CDSQRLDEAWGVLDSMLEVGV--CPTVRSYTAILHGYCKQG 198
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 154 FLKEMSRR-----GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
FL E R+ G +T TV L L + +EAL ++ DV+ YN
Sbjct: 269 FLDEAFRQVDVMHSRGVYMTIETVNILFDCLCRGSMFSEALTLLECSEELNWDVDVFCYN 328
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+++ LC G+ + LL + G PD++++TI I S C+ G
Sbjct: 329 TMMSRLCDTGDIARVLKLLVDLVKKGI--GPDMFSFTIAIRSLCRAG 373
>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
Length = 370
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 38/141 (26%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W + M R +T T + L++ GL EA+ F RM+ + C+PD A++++I
Sbjct: 167 WHVIDLMKARDVE--ITVETFSILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILI 224
Query: 212 NAL----------------------------------CRVGNFNKARFLLEQMELPGFRC 237
+ L CR GN ++A + +M++ G +
Sbjct: 225 SILCRKRRASEAQEFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIK- 283
Query: 238 PPDVYTYTILISSYCKYGMQT 258
P+VYTY+I+I S C+ G T
Sbjct: 284 -PNVYTYSIVIDSLCRCGQIT 303
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L++ G ++EA F MK +P+VY Y++VI++LCR G +A + +M
Sbjct: 255 TNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMLD 314
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C P+ TY L+ + K G
Sbjct: 315 AG--CQPNSITYNSLMRIHVKAG 335
>gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa
Japonica Group]
gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa
Japonica Group]
gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group]
gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group]
Length = 665
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
+ S LI G + +A T M++ C PDV YN+++N C +G +KA L
Sbjct: 368 LNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENL 427
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCK 253
+ +ME+ G PD Y+Y IL+ CK
Sbjct: 428 IRKMEMSGVN--PDRYSYNILLKGLCK 452
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCR 201
R + GLW+ EM RRG + V C LI L + V+EA RM +
Sbjct: 315 RFSEAVGLWE---EMVRRG----LKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQ 367
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+V YN +I+ R G+ KA + M+ G C PDV TY IL++ YC GM
Sbjct: 368 LNVSIYNALISGFWRAGSIEKAYKTVSFMQRNG--CEPDVVTYNILLNHYCSIGM 420
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 18/176 (10%)
Query: 83 LKKEADNIANNVLVLGPAAYRNPQKVTL-GINKATEFYHWVERFFHF---------FHNE 132
+ +A+N+ + + G R + L G+ KA H +++ F F F +
Sbjct: 420 MTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKA----HQLDKAFAFVSDHMEVGGFCDI 475
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
V+C + F R V + KEM +G T + LI L G N A F
Sbjct: 476 VSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGI--LINGLFGIGYSNLAEELF 533
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+M + P+V YN++++ LC+VG+F A+ + QM PD T+ LI
Sbjct: 534 DQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQK--EVSPDTVTFNTLI 587
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R +++ + + M R G V T + L+ G+ ++A +M+
Sbjct: 380 FWRAGSIEKAYKTVSFMQRNGCEPDVVTYNI--LLNHYCSIGMTDKAENLIRKMEMSGVN 437
Query: 202 PDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y+YN+++ LC+ +KA F+ + ME+ GF D+ + ILI ++C+
Sbjct: 438 PDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGF---CDIVSCNILIDAFCR 487
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 10/163 (6%)
Query: 98 GPAAYRNPQKVTL-GINKATEFYHWVERFFHFFHNEVTCKEMGIVFAR--GNNVKGL-WD 153
G A +R+ +V L G +A +F +E F + C+E G+ + R G +K +D
Sbjct: 155 GVAFHRSLYRVLLAGYARAGKFDSVIETFDEMVTS--GCREFGVDYNRFIGVMIKNCCFD 212
Query: 154 FLKEMSRRG--NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+++ G +T T + I L + + M +F C PD +A N+ +
Sbjct: 213 LVEKYYNMALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYV 272
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+ LC A ++E+M + G PDV TYT ++S C +
Sbjct: 273 HYLCGHNRLYDALQMVEKMTMKG--TGPDVVTYTTVVSCLCDH 313
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 172 VTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
V+C LI VN AL F M + D Y ++IN L +G N A L +Q
Sbjct: 476 VSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQ 535
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M + P+V Y I++ + CK G
Sbjct: 536 M--LNTKIVPNVNVYNIMLHNLCKVG 559
>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQ 197
+V+A N++ F E +R + + S +C L+ L + G + + + M +
Sbjct: 99 LVWAYAKNLRTRLGF--EAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIR 156
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R P + ++N+VIN LC+VG NKA ++E M++ G +V TY LI YCK G
Sbjct: 157 RRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGV--SANVITYNTLIDGYCKMG 212
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G ST CLI L +G + A M + D+ YN++I++LC G
Sbjct: 369 GKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMK 428
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
KA LL++M G + P TY +I YCK G
Sbjct: 429 KALRLLDEMCRKGLK--PSQLTYNTMIDGYCKEG 460
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEA 188
NEVT + F + NV EM+R+G V + VT LI L G VNEA
Sbjct: 235 NEVTFNILIDGFCKDKNVSAAMKVFAEMNRQG----VKPNVVTYNSLINGLCNNGKVNEA 290
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
A +M +P++ +N ++N C+ +A L + M G P+V TY ILI
Sbjct: 291 TALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGI--TPNVTTYNILI 348
Query: 249 SSYCK 253
+YCK
Sbjct: 349 DAYCK 353
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + VK + +M ++G VTT + LI ++ + +A A + M
Sbjct: 316 FCKNKMVKQAGELFDDMPKQGITPNVTTYNI--LIDAYCKDENMEDAFALYRIMLGKGVC 373
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV YN +I LCR G+ AR L+ +M+ + D+ TY ILI S C G
Sbjct: 374 PDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLK--ADLITYNILIDSLCNKG 425
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
LKEM R +G T LI ++ V+ A+ F M + +P+V YN +IN
Sbjct: 223 ILKEM--RADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLING 280
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC G N+A L +QM + P++ T+ L++ +CK M
Sbjct: 281 LCNNGKVNEATALRDQMVNSCLK--PNIITHNALLNGFCKNKM 321
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L +G + +AL M + +P YN +I+ C+ GN A L QM
Sbjct: 413 TYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQM 472
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E G +V TY +LI +CK
Sbjct: 473 EKVGRL--ANVATYNVLIKGFCK 493
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
D +++M RG + ++T +T+ +G+ G + +A A M+ P+ +N++I
Sbjct: 184 DIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILI 243
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ C+ N + A + +M G + P+V TY LI+ C G
Sbjct: 244 DGFCKDKNVSAAMKVFAEMNRQGVK--PNVVTYNSLINGLCNNG 285
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN---KARFLLEQME 231
+I L + G +N+A MK +V YN +I+ C++G KA +L++M
Sbjct: 169 VINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMR 228
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
G CP +V T+ ILI +CK
Sbjct: 229 ADGI-CPNEV-TFNILIDGFCK 248
>gi|218200292|gb|EEC82719.1| hypothetical protein OsI_27404 [Oryza sativa Indica Group]
Length = 665
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
+ S LI G + +A T M++ C PDV YN+++N C +G +KA L
Sbjct: 368 LNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENL 427
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCK 253
+ +ME+ G PD Y+Y IL+ CK
Sbjct: 428 IRKMEMSGVN--PDRYSYNILLKGLCK 452
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFRCR 201
R + GLW+ EM RRG + V C LI L + V+EA RM +
Sbjct: 315 RFSEAVGLWE---EMVRRG----LKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQ 367
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+V YN +I+ R G+ KA + M+ G C PDV TY IL++ YC GM
Sbjct: 368 LNVSIYNALISGFWRAGSIEKAYKTVSFMQRNG--CEPDVVTYNILLNHYCSIGM 420
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 18/176 (10%)
Query: 83 LKKEADNIANNVLVLGPAAYRNPQKVTL-GINKATEFYHWVERFFHF---------FHNE 132
+ +A+N+ + + G R + L G+ KA H +++ F F F +
Sbjct: 420 MTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKA----HQLDKAFAFVSDHMEVGGFCDI 475
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
V+C + F R V + KEM +G T + LI L G N A F
Sbjct: 476 VSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGI--LINGLFGIGYSNLAEELF 533
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+M + P+V YN++++ LC+VG+F A+ + QM PD T+ LI
Sbjct: 534 DQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQK--EVSPDTVTFNTLI 587
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R +++ + + M R G V T + L+ G+ ++A +M+
Sbjct: 380 FWRAGSIEKAYKTVSFMQRNGCEPDVVTYNI--LLNHYCSIGMTDKAENLIRKMEMSGVN 437
Query: 202 PDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y+YN+++ LC+ +KA F+ + ME+ GF D+ + ILI ++C+
Sbjct: 438 PDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGF---CDIVSCNILIDAFCR 487
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 10/163 (6%)
Query: 98 GPAAYRNPQKVTL-GINKATEFYHWVERFFHFFHNEVTCKEMGIVFAR--GNNVKGL-WD 153
G A +R+ +V L G +A +F +E F + C+E G+ + R G +K +D
Sbjct: 155 GVAFHRSLYRVLLAGYARAGKFDSVIETFDEMVTS--GCREFGVDYNRFIGVMIKNCCFD 212
Query: 154 FLKEMSRRG--NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+++ G +T T + I L + + M +F C PD +A N+ +
Sbjct: 213 LVEKYYNMALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYV 272
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+ LC A ++E+M + G PDV TYT ++S C +
Sbjct: 273 HYLCGHNRLYDALQMVEKMTMKG--TGPDVVTYTTVVSCLCDH 313
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 172 VTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
V+C LI VN AL F M + D Y ++IN L +G N A L +Q
Sbjct: 476 VSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQ 535
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M + P+V Y I++ + CK G
Sbjct: 536 M--LNTKIVPNVNVYNIMLHNLCKVG 559
>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
Length = 614
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFR 199
+ ++ + +EM RG V +TV T LI +EG V L M
Sbjct: 324 LCKAGRIQDAVEMFEEMRERG----VNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRG 379
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ D+ AYN + N LCRV + A ++E+M G + PD TYT LI +CK G
Sbjct: 380 IKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLK--PDKVTYTTLIDGFCKEG 433
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T T +I + V M+ +P V YNVV+N C +G A LL
Sbjct: 490 TTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNA 549
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M G CP D+ TY IL+ +CK+G
Sbjct: 550 MLNIGV-CPDDI-TYNILLDGHCKHG 573
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R + + EM RRG V T L+ + + +N A A M + PD
Sbjct: 256 RSGKLASARNMFDEMLRRGVPPTVVT--FNTLMSGMCKASDLNSANALRGLMAKAGVAPD 313
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
VY Y + LC+ G A + E+M G P+ +T LI ++CK G
Sbjct: 314 VYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVN--PNTVVFTTLIDAHCKEG 363
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++K D ++EM R NG T T LI +EG ++ A+ M
Sbjct: 394 LCRVRDLKAANDIVEEM--RNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVA 451
Query: 202 PDVYAYNVVINALCRVG-NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
D Y +I+ L + G + + R L E ME G PD TYT++I ++CK
Sbjct: 452 LDEVTYTTLISGLSKSGRSVDSERILCEMME-AGLE--PDNTTYTMVIDAFCK 501
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
+G D EM + + E V VT LI L + G ++ M + PD
Sbjct: 432 EGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTT 491
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +VI+A C+ + LL++M+ G + P V TY ++++ +C G
Sbjct: 492 YTMVIDAFCKNSDVKTGFKLLKEMQNKGRK--PGVVTYNVVMNGFCILG 538
>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
Length = 353
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193
TCK G K L EM +G + T V ++ + +EG V++A+
Sbjct: 2 TCKRSG--------YKQAMKLLDEMRDKGCTPDIVTYNV--VVNGICQEGRVDDAIEFLK 51
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ + C P+ +YN+V+ LC + A L+ +M G CPP+V T+ +LIS C+
Sbjct: 52 NLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKG--CPPNVVTFNMLISFLCR 109
Query: 254 YGM 256
G+
Sbjct: 110 KGL 112
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ + EM ++G V T + LI L +GLV AL ++ ++ C P+ +YN +++
Sbjct: 83 ELMGEMGQKGCPPNVVTFNM--LISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLH 140
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A C+ +KA L+ M G C PD+ +Y L+++ C+ G
Sbjct: 141 AFCKQKKMDKAMAFLDLMVSRG--CYPDIVSYNTLLTALCRSG 181
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + + FL M RG ++V+ +T L+ L G V+ A+ +++K C
Sbjct: 142 FCKQKKMDKAMAFLDLMVSRGCYPDIVSYNT---LLTALCRSGEVDVAVELLHQLKDKGC 198
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P + +YN VI+ L + G +A LL +M G + PD+ TY+ + + C+
Sbjct: 199 APVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQ--PDIITYSTIAAGLCR 249
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+A M C PD+ +YN ++ ALCR G + A LL Q++ G C P + +Y
Sbjct: 148 MDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKG--CAPVLISY 205
Query: 245 TILISSYCKYG 255
+I K G
Sbjct: 206 NTVIDGLTKAG 216
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ K + L EM +G +++T ST+ L E + +A+ F +++
Sbjct: 212 LTKAGKTKEALELLNEMVSKGLQPDIITYSTIA---AGLCREDRIEDAIRAFGKVQDMGI 268
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
RP+ YN +I LC+ + A L M G C P+ TYTILI G+
Sbjct: 269 RPNTVLYNAIILGLCKRRETHSAIDLFAYM--IGNGCMPNESTYTILIEGLAYEGL 322
>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 641
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ + E+G V+E + ++ F C PD+ +YN V+ LC ++ L+ +M G
Sbjct: 184 VVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVG 243
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
CPP+V T+ LI+ C+ G+
Sbjct: 244 --CPPNVATFNTLIAYLCRNGL 263
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 24/222 (10%)
Query: 46 ESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNP 105
E V + L +P G R + I K +AN++L P+ P
Sbjct: 265 EQVHEALSQMPEH--------GCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKP 316
Query: 106 QKVTL-----GINKATEFYHWVERFFHFFH-----NEVTCKEMGIVFARGNNVKGLWDFL 155
V G+ A + + F ++VT + F + V + + L
Sbjct: 317 NVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELL 376
Query: 156 KEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
++M G +++T +TV I +EGLV+EA+ M C+P+ +Y +V+ L
Sbjct: 377 EQMLEHGCIPDVITYTTV---INGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGL 433
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
CR + A+ L+ M G C P+ T+ LI+ CK G+
Sbjct: 434 CRAERWVDAQELISHMIQQG--CLPNPVTFNTLINFMCKKGL 473
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 148 VKGL-----WD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
+KGL WD + EM R G V +T LI L GL + +M +
Sbjct: 220 LKGLCMAKRWDDVEELMVEMVRVGCPPNV--ATFNTLIAYLCRNGLFEQVHEALSQMPEH 277
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C PD+ Y +I+ +C+ G+ A +L +M P + P+V Y ++ C
Sbjct: 278 GCTPDLRMYATIIDGICKDGHHEVANDILSRM--PSYGLKPNVVCYNTVLKGLCS 330
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI + ++GLV +A+ +M C PD+ +Y+ VI+ L + G +A LL M G
Sbjct: 464 LINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKG 523
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+ Y+ + S+ + G
Sbjct: 524 IT--PNTIIYSSMASALSREG 542
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+ L EG ++ + F ++ R D YN VI++LC+ ++A M G
Sbjct: 534 MASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNG 593
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
C P+ TYTILI G+
Sbjct: 594 --CMPNESTYTILIRGLASEGL 613
>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
Length = 420
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+ EM RG V T T LI G V+ A+ M+ P+ Y +I
Sbjct: 148 LMDEMQARGFSPTVVTYTT--LIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQG 205
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC G +A +L++M+L G C P+V TYT LI C+ G+
Sbjct: 206 LCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGL 248
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
I L ++G + EA+ F M++ PD + YN++IN LC+ L+++M+ GF
Sbjct: 98 INGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGF 157
Query: 236 RCPPDVYTYTILISSYCKYG 255
P V TYT LI +C G
Sbjct: 158 S--PTVVTYTTLIHGFCTAG 175
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 149 KGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
KGL++ FL EM +G +T T LI L ++G EA M C DV
Sbjct: 246 KGLFEMGMEFLDEMII--SGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDV 303
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
YN +I+ LC++G + AR + M G PDV+TYT LI C G+
Sbjct: 304 VIYNSLIDGLCKMGELDFAREMQILMVEKGV--APDVFTYTSLIQGLCDAGL 353
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Query: 148 VKGLWD---------FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
++GL D LKEM RGN T T LI L ++GL + M
Sbjct: 203 IQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIIS 262
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+ Y +I+ LC+ G+F +A LL +M G C DV Y LI CK G
Sbjct: 263 GCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIG--CELDVVIYNSLIDGLCKMG 317
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ +EM +G+ + T LI L ++ + ++ M+ P V Y +I
Sbjct: 111 MEIFREMEEKGSAP--DSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLI 168
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ C G + A +L++ME G P+ TYT LI C G
Sbjct: 169 HGFCTAGRVDAAMDILDEMEHRGIT--PNTVTYTALIQGLCDCG 210
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
DV +Y+ IN LC+ G +A + +ME G PD +TY ILI+ CK
Sbjct: 90 DVISYSRKINGLCKKGQIAEAMEIFREMEEKG--SAPDSFTYNILINGLCK 138
>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 754
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + + +V + L EM +G + T LI L + G + +A+
Sbjct: 459 NVVTYTALSDGLCKQGDVCAANELLHEMCSKGLE--LNIFTYNSLINGLCKAGNLEQAMR 516
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
T M + +PDVY Y +I ALC+ ++A LL++M G + P + TY +L++
Sbjct: 517 TMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIK--PTIVTYNVLMNG 574
Query: 251 YCKYG 255
+C G
Sbjct: 575 FCMSG 579
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G ++ + T ++ +G + A F M++ D Y +IN LCR G +
Sbjct: 349 HGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKE 408
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
A +L++ME G D TYT+LI YCK G T
Sbjct: 409 AERVLQEMEDKGLDV--DAVTYTVLIDGYCKVGKMT 442
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R +K L+EM +G V T T LI + G + EA +M Q R
Sbjct: 400 LCRAGELKEAERVLQEMEDKGLD--VDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVT 457
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V Y + + LC+ G+ A LL +M G +++TY LI+ CK G
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLEL--NIFTYNSLINGLCKAG 509
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R ++ ++ EM +RG T T LI L G + EA M+
Sbjct: 365 FCRKGDLAAARNWFDEMQKRGLA--ADGVTYTALINGLCRAGELKEAERVLQEMEDKGLD 422
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D Y V+I+ C+VG +A FL+ ++ R P+V TYT L CK G
Sbjct: 423 VDAVTYTVLIDGYCKVGKMTEA-FLVHN-KMVQKRVTPNVVTYTALSDGLCKQG 474
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM+ RG + T +I +L +EG V++A+ M D + V++
Sbjct: 307 LLSEMAARGLE--LNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSG 364
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CR G+ AR ++M+ G D TYT LI+ C+ G
Sbjct: 365 FCRKGDLAAARNWFDEMQKRGL--AADGVTYTALINGLCRAG 404
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+ F + + + +YN+++ ALC G A L ++M PPDV TY
Sbjct: 238 LDEAVQLFQELPE----KNTCSYNILLKALCTAGRIKDAHQLFDEMA-----SPPDVVTY 288
Query: 245 TILISSYC 252
I++ YC
Sbjct: 289 GIMVHGYC 296
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I L + ++ A + M +P + YNV++N C G + LLE M
Sbjct: 532 TYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWM 591
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
P+ TY L+ YC
Sbjct: 592 LEKNIH--PNTTTYNSLMKQYC 611
>gi|15228903|ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial; AltName: Full=Protein
PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
gi|7670019|dbj|BAA94973.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332642359|gb|AEE75880.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 5/140 (3%)
Query: 118 FYHWVERFFHFFHNEVTCKE-MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLI 176
FY WV F + + + K +G R + + LKE+ R +G ++ + LI
Sbjct: 95 FYLWVSNFDPVYAKDQSLKSVLGNALFRKGPLLLSMELLKEI--RDSGYRISDELMCVLI 152
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
G GL F ++ +P YN VI+AL + + + A +QM G
Sbjct: 153 GSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDG-- 210
Query: 237 CPPDVYTYTILISSYCKYGM 256
C PD +TY ILI CK G+
Sbjct: 211 CKPDRFTYNILIHGVCKKGV 230
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T +I L + ++ A F +M+ C+PD + YN++I+ +C+ G ++A L+
Sbjct: 179 STRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLV 238
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+QME G R P+V+TYTILI + G
Sbjct: 239 KQMEQEGNR--PNVFTYTILIDGFLIAG 264
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
R +K +D KEM G + + +T LI+ G + ++ F +MK+
Sbjct: 505 LCRAKEIKDAFDCFKEMLEWG----IEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENG 560
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
PD+YAYN I + C++ KA LL+ M G + PD +TY+ LI + + G ++
Sbjct: 561 LSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLK--PDNFTYSTLIKALSESGRES 617
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
FL EM RG + LVT +T V G+ V + ++ +PDV ++++IN
Sbjct: 447 FLTEMQDRGISPNLVTFNTFLSGYSVRGD---VKKVHGVLEKLLVHGFKPDVITFSLIIN 503
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LCR A ++M G P+ TY ILI S C G
Sbjct: 504 CLCRAKEIKDAFDCFKEMLEWGIE--PNEITYNILIRSCCSTG 544
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+LK R +G T LI + ++G+V+EA+ +M+Q RP+V+ Y ++I+
Sbjct: 200 YLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDG 259
Query: 214 LCRVGNFNKARFLLEQMELPG---------------FRCPPDVYTYTILI 248
G ++A LE M + FRC P + +L+
Sbjct: 260 FLIAGRVDEALKQLEMMRVRKLNPNEATIRTFVHGIFRCLPPCKAFEVLV 309
>gi|357138821|ref|XP_003570985.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Brachypodium distachyon]
Length = 613
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ EGL +A F +M+Q PDVYAYN ++ A R G A + M
Sbjct: 329 TYTALVNAFAREGLCEKAEEVFEQMQQAGHEPDVYAYNALMEAYSRAGFPQGASEIFSLM 388
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQ 257
+ G C PD +Y IL+ +Y + G+
Sbjct: 389 QHMG--CEPDRASYNILVDAYGRAGLH 413
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T T +I V G+ A+ F M+ C+ ++ Y ++NA R G KA + E
Sbjct: 292 TETYTLMINVYGKSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFE 351
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
QM+ G PDVY Y L+ +Y + G
Sbjct: 352 QMQQAGHE--PDVYAYNALMEAYSRAG 376
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ G GL EA ATF +KQ P + ++ ++++A R GN + ++ Q+ G
Sbjct: 403 LVDAYGRAGLHREAEATFESLKQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSG 462
Query: 235 FRCPPDVYTYTILISSYCKYG 255
R PD + ++ +Y + G
Sbjct: 463 LR--PDTFALNAMLHAYARAG 481
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
FAR + + ++M + G+ V L++ G A F M+ C
Sbjct: 336 AFAREGLCEKAEEVFEQMQQAGHEPDVYA--YNALMEAYSRAGFPQGASEIFSLMQHMGC 393
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD +YN++++A R G +A E ++ G P + ++ +L+S++ + G
Sbjct: 394 EPDRASYNILVDAYGRAGLHREAEATFESLKQQGM--APTMKSHMLLLSAHARSG 446
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+A+ + RMK+ RCR + Y ++IN + A + +M+ G C ++ TYT
Sbjct: 275 KAVEVYQRMKKERCRTNTETYTLMINVYGKSKQPMSAMKIFNEMQSIG--CKANICTYTA 332
Query: 247 LISSYCKYGM 256
L++++ + G+
Sbjct: 333 LVNAFAREGL 342
>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Cucumis sativus]
Length = 542
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F+ W E+ F H + + + +W+ + +M R+G +++ T
Sbjct: 139 ALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKG---ILSRETFAL 195
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+ + V EA+ +F +M++F + V +N +++ LC+ N KA+ + ++M+
Sbjct: 196 ITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGR 255
Query: 235 FRCPPDVYTYTILISSY 251
F+ PD+ +YTIL+ +
Sbjct: 256 FK--PDIKSYTILLEGW 270
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+AR VK + ++M + G + S L+ L + V +A F +MK R +
Sbjct: 200 YARARKVKEAVESFEKMEKFGFQ--MGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFK 257
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD+ +Y +++ + N K + +M GF PDV T+ ILI+++CK
Sbjct: 258 PDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFE--PDVVTFGILINAHCK 307
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + N+ L + +EM G V T + LI + +EA+ F+ M+ +
Sbjct: 270 WGQDQNLLKLNEVYREMRDEGFEPDVVTFGI--LINAHCKARKYDEAIRLFHEMEAKNIK 327
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P + + +IN L +A EQ++L GF P+ TY ++ +YC
Sbjct: 328 PSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGF--APEAPTYNAVVGAYC 376
>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
Length = 480
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G++ EA + RM Q C P+V +YN++I+ C+ N KA L +ME G
Sbjct: 70 LISCLCKAGMLAEAESYLKRMPQ-HCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELG 128
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PP + Y+ ++ S+CK G
Sbjct: 129 H--PPTPHAYSSIVQSFCKTG 147
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 12/166 (7%)
Query: 90 IANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVK 149
++ N+++ G RN +K + + E H H + + V F + NV
Sbjct: 99 VSYNIIIDGYCKARNIEKALAFLREMEELGHPPTP--HAYSSIVQS------FCKTGNVS 150
Query: 150 GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
D EM +G + V L+ L ++EA F M C+PDV YN
Sbjct: 151 KAMDVFAEMPAKGCEPDIVNFNV--LLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNT 208
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+I LC+ ++A FLLE+M+ P TYT LI CK+
Sbjct: 209 MIAGLCKWKKLDEAVFLLERMKQEDV--SPTFVTYTTLIDHLCKFA 252
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
AR + ++ KEMSR +LV +S + L+ + G V+EA +M
Sbjct: 390 LARAGRLDDAFELYKEMSRINCQQLVGSSNI--LLDGILRRGSVDEAKDFLKQMTDTGIV 447
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQM 230
PD + Y+ ++ LC G ++AR L+E++
Sbjct: 448 PDKFTYDKLVVGLCWQGKADQARKLVEEL 476
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI+ + G + RM + P+ YN +I+ LC+ G +A L++M
Sbjct: 35 LIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCLCKAGMLAEAESYLKRMPQ-- 92
Query: 235 FRCPPDVYTYTILISSYCK 253
C P+V +Y I+I YCK
Sbjct: 93 -HCAPNVVSYNIIIDGYCK 110
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
I+ L E LV +A A MK PDV ++ ++I + G+F + L++M G
Sbjct: 1 IRKLVEADLVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGL 60
Query: 236 RCPPDVYTYTILISSYCKYGM 256
P+ Y LIS CK GM
Sbjct: 61 F--PNAILYNNLISCLCKAGM 79
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 156 KEM--SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
KEM RG G T T L++ L + +A+ Y M P+++ Y ++I++
Sbjct: 295 KEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISS 354
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ +A LL M GF P + + +L+S + G
Sbjct: 355 LCKTDQVEEAFKLLSAMRDKGF--VPSLKIWEVLLSRLARAG 394
>gi|255580552|ref|XP_002531100.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529296|gb|EEF31265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 483
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ LG++G + EA MK+ R RPDV YN++IN LC+ G +A L +M++ G
Sbjct: 296 LMNDLGKKGKIEEAKLLLLEMKKRRFRPDVVIYNILINHLCKEGKVAEAYKTLFEMQIGG 355
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C + TY +L +C+ G
Sbjct: 356 --CEANAATYRMLADGFCQVG 374
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
+ K L+D EM R N + LIK ++G +A F M + + P V
Sbjct: 168 DAKQLFDRSSEMGFRLN-----SVPFNILIKGWLKKGEWYQAGKVFDEMLERKVEPSVVT 222
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN +I LCR G KA+ L + M G R P+ TY +L+ C G
Sbjct: 223 YNSLIGYLCRNGELGKAKGLFKDMIKKGKR--PNAVTYALLMEGLCSMG 269
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+ T LI L G + +A F M + RP+ Y +++ LC +G + +A+ +L
Sbjct: 219 SVVTYNSLIGYLCRNGELGKAKGLFKDMIKKGKRPNAVTYALLMEGLCSMGEYKEAKKML 278
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
ME G C P + +L++ K G
Sbjct: 279 FDMEYRG--CKPKNLNFGVLMNDLGKKG 304
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L +EG V EA T + M+ C + Y ++ + C+VG F + +L M +
Sbjct: 331 LINHLCKEGKVAEAYKTLFEMQIGGCEANAATYRMLADGFCQVGEFEEGLKVLNAMLVS- 389
Query: 235 FRCPPDVYTYTILISSYCKYG 255
R P + T+ + K G
Sbjct: 390 -RHAPRIETFNCFVVGLMKSG 409
>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+G G L T T T LI L G EA MK PD+ A++V+I+ +C+ G
Sbjct: 258 KGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEV 317
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
++AR +L+ M G PDV TY L++ YC
Sbjct: 318 SEARVILKTMTEMGVE--PDVATYNTLMNGYC 347
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ K+M NG T + L+ L ++G +++A+ F M+ +PD+ YN++I+
Sbjct: 427 ELFKDM--HSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMID 484
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+C+ G F AR L ++ + G + P+ + T I CK G+
Sbjct: 485 GMCKYGKFKDARELFAELSVKGLQ--PNNWVCTPTIDGVCKGGL 526
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI EG + A+ F M +P+V++Y+++I LCRVG + LLE M
Sbjct: 163 TFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHM 222
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
++ G C PDV Y ++ CK
Sbjct: 223 KVVG--CEPDVVIYNTIVDRLCK 243
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
K + L EM +G + + LI ++ +EG V+EA M + PDV YN
Sbjct: 283 KEAFGLLNEM--KGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYN 340
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
++N C +AR + E M G PDV++++IL++ YCK
Sbjct: 341 TLMNGYCLRMEVVEARKVFEVMISKGRM--PDVFSFSILVNGYCK 383
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ L ++ LVNEA+ F +MK P V Y +I+ L +G + +A LL +M+ G
Sbjct: 237 IVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMK--G 294
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD+ +++LI CK G
Sbjct: 295 GNIMPDLVAFSVLIDIMCKEG 315
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 100 AAYRNPQKVTLGINKA-TEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEM 158
++YR+ + IN A + F H V + + V E+ R + K + K+M
Sbjct: 60 SSYRHKNRTFRNINDALSAFNHMVNT--NPLPSIVKFGELFSALVRMKHYKTVVSLSKQM 117
Query: 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
G V + T+ LI V+ + ++ + P+V ++ +IN C G
Sbjct: 118 EMAGISHDVLSLTI--LINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEG 175
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
+A L + M G++ P+V++Y+I+I C+ G T
Sbjct: 176 KIGRAIELFDVMVARGYK--PNVHSYSIIIKGLCRVGKTT 213
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK L G E + MK C PDV YN +++ LC+ N+A + +M+ G
Sbjct: 202 IIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTG 261
Query: 235 FRCPPDVYTYTILI 248
P V TYT LI
Sbjct: 262 IL--PTVVTYTSLI 273
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 20/126 (15%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVT---CLIKVLGEEGLVNE 187
++ CKE + AR LK M+ G ++ T +T+ CL + E V E
Sbjct: 309 DIMCKEGEVSEAR--------VILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFE 360
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
+ + RM PDV+++++++N C+ ++A+ L ++M G PD +Y L
Sbjct: 361 VMISKGRM------PDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGL--IPDTVSYNTL 412
Query: 248 ISSYCK 253
IS C+
Sbjct: 413 ISGLCQ 418
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA F M PD +YN +I+ LC+ +A L + M G+ PP++ TY
Sbjct: 387 IDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGY--PPNLVTY 444
Query: 245 TILISSYCKYG 255
+IL+ K G
Sbjct: 445 SILLDCLSKQG 455
>gi|357503117|ref|XP_003621847.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496862|gb|AES78065.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 457
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
M F G +GL + L EM R+G +G + V L+K G + EA +
Sbjct: 225 MKCCFRCGRLEQGL-EILSEMRRKGFTFDG-FAYCTVVAALVKT----GRIEEADEIAEK 278
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M PD+ +YN +IN CR G F++A L++++E G +C D YT+TI+I CK
Sbjct: 279 MMSNGLVPDLASYNTMINLFCRQGRFDEALRLVDEIEKQGMKC--DQYTHTIIIHGLCKD 336
Query: 255 G 255
G
Sbjct: 337 G 337
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P + +YNV+IN LC+ G N A L + GF P+V TY +I+ CK
Sbjct: 146 PSMASYNVMINGLCKNGYVNNALMLFRNLRRRGF--VPEVLTYNAMINGLCK 195
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+ ++ +I L + G VN AL F +++ P+V YN +IN LC+ AR +L
Sbjct: 147 SMASYNVMINGLCKNGYVNNALMLFRNLRRRGFVPEVLTYNAMINGLCKARRLADARRVL 206
Query: 228 EQMELPGFRCPPDVYTYTILI 248
+ GF P+ TYT ++
Sbjct: 207 NEFCDFGF--EPNAITYTTVM 225
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++ A RMK+ PDV +YN + + R K+ L ++M G R PDV++Y
Sbjct: 58 IDAAYNILNRMKEAGINPDVVSYNSLSSGAVRKCLLQKSLDLFDEMLQSGIR--PDVWSY 115
Query: 245 TILISSYCKYG 255
IL+ Y + G
Sbjct: 116 NILMHCYFRLG 126
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 9/76 (11%)
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA----RFLLEQMELPGFRCPP 239
L+ ++L F M Q RPDV++YN++++ R+G +A R + E+ E+ P
Sbjct: 92 LLQKSLDLFDEMLQSGIRPDVWSYNILMHCYFRLGKPEEANGVFRDIFERGEI-----YP 146
Query: 240 DVYTYTILISSYCKYG 255
+ +Y ++I+ CK G
Sbjct: 147 SMASYNVMINGLCKNG 162
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + ++ +I + +G +EAL +++ + D Y + ++I+ LC+ GNF
Sbjct: 282 NGLVPDLASYNTMINLFCRQGRFDEALRLVDEIEKQGMKCDQYTHTIIIHGLCKDGNFEG 341
Query: 223 ARFLLEQMELPGF 235
A L+ M GF
Sbjct: 342 AEKHLDYMNTLGF 354
>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
Length = 1450
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 4/128 (3%)
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187
FF + V+ FAR NV+ + D +EM + G G+ T +I + G++G +
Sbjct: 394 FFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGK--DEMTYNTMIHMYGKQGQNDL 451
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
AL + MK PDV Y V+I++L + +A ++ +M G + P + TY+ L
Sbjct: 452 ALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVK--PTLRTYSAL 509
Query: 248 ISSYCKYG 255
I Y K G
Sbjct: 510 ICGYAKAG 517
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 9/122 (7%)
Query: 138 MGIVFARG---NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
MG V+AR N V+ L+D ++E R +LV+ +T+ ++ E N A+
Sbjct: 263 MG-VYARSGKFNKVQELFDLMRE--RGCEPDLVSFNTLIN-ARLKAGEMTPNLAIELLTE 318
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+++ RPD+ YN +I+A R N +A + + M C PD++TY +IS Y +
Sbjct: 319 VRRSGLRPDIITYNTLISACSRASNLEEAVNVFDDM--VAHHCEPDLWTYNAMISVYGRC 376
Query: 255 GM 256
G+
Sbjct: 377 GL 378
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF--NKARF 225
T ++ V G N+ F M++ C PD+ ++N +INA + G N A
Sbjct: 255 TVKVYNAMMGVYARSGKFNKVQELFDLMRERGCEPDLVSFNTLINARLKAGEMTPNLAIE 314
Query: 226 LLEQMELPGFRCPPDVYTYTILISS 250
LL ++ G R PD+ TY LIS+
Sbjct: 315 LLTEVRRSGLR--PDIITYNTLISA 337
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ L E+ R G +++T +T LI + EA+ F M C PD++ YN +I
Sbjct: 314 ELLTEVRRSGLRPDIITYNT---LISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMI 370
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ R G KA L +E GF PD +Y + ++ + G
Sbjct: 371 SVYGRCGLSGKAEQLFNDLESRGFF--PDAVSYNSFLYAFAREG 412
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I V G GL +A F ++ PD +YN + A R GN K + + E+M
Sbjct: 365 TYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEM 424
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
GF D TY +I Y K G
Sbjct: 425 VKIGF--GKDEMTYNTMIHMYGKQG 447
>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 874
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R + + LK+M +RG + T T LI LG + + E M++
Sbjct: 569 FCREGKISSAFQVLKDMEKRGCNK--TLQTYNSLILGLGSKNQIFELYGLIDEMREKGVS 626
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDV YN ++N LC G N A +L++M G P++ ++ ILI ++CK
Sbjct: 627 PDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGI--SPNISSFRILIKAFCK 676
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N +T K M + F + ++ + M R N + + + L G + EA
Sbjct: 290 NVITYKLMLMGFCKEGMLEEAKTLVDTMKRNAN--FINLESYNIWLLGLIRNGKLLEAWI 347
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M PD+Y+YN+V++ LC+ G + AR L+ M G PD TY+ L+
Sbjct: 348 VLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGIL--PDTVTYSTLLHG 405
Query: 251 YCKYG 255
YC G
Sbjct: 406 YCSKG 410
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 187 EALATFYR-MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
E ++ Y+ M R P+ Y +N++I LC G+ AR L ++M P C P+ +T+
Sbjct: 129 ELVSWLYKDMVLARVSPEAYTFNLLIGLLCDSGHLEDARELFDKM--PARGCEPNEFTFG 186
Query: 246 ILISSYCKYGMQT 258
IL+ YC+ G+ +
Sbjct: 187 ILVRGYCRAGLAS 199
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI +L + G + +A F +M C P+ + + +++ CR G +K LL QM
Sbjct: 149 TFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQM 208
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P+ Y LISS+CK G
Sbjct: 209 RTMGIL--PNNVLYNTLISSFCKEG 231
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 21/108 (19%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T L+ L +EG ++EA +M + D N++INALC G +KA ++
Sbjct: 431 TYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVN 490
Query: 229 QM---------------------ELPGFRCPPDVYTYTILISSYCKYG 255
M + G +C PD+ TY+ +IS CK G
Sbjct: 491 GMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAG 538
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG L T T + L+ +G V EA + M C P+ Y NV++++L + G ++
Sbjct: 390 NGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISE 449
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A LL++M G+ D T I+I++ C G
Sbjct: 450 AENLLQKMNEKGYGV--DTVTCNIIINALCNNG 480
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+EG++ EA MK+ ++ +YN+ + L R G +A +L++M G PD
Sbjct: 303 KEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIVLKEM--LGIGIEPD 360
Query: 241 VYTYTILISSYCKYGM 256
+Y+Y I++ CK GM
Sbjct: 361 IYSYNIVMDGLCKNGM 376
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
KGL + L +M R G L LI +EG ++A +M++ P V +N
Sbjct: 200 KGL-ELLGQM--RTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFN 256
Query: 209 VVINALCRVGNFNKARFLLEQMELP-GFRCP-PDVYTYTILISSYCKYGM 256
I+ALC G +A + M++ P P+V TY +++ +CK GM
Sbjct: 257 SRISALCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGM 306
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
+LVT ST+ I L + G +++A F M +PD Y+ I++ CR G + A
Sbjct: 523 DLVTYSTI---ISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAF 579
Query: 225 FLLEQMELPGFRCPPDVYTYTILI 248
+L+ ME G C + TY LI
Sbjct: 580 QVLKDMEKRG--CNKTLQTYNSLI 601
>gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g71060, mitochondrial-like [Cucumis sativus]
Length = 542
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F+ W E+ F H + + + +W+ + +M R+G +++ T
Sbjct: 139 ALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKG---ILSRETFAL 195
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+ + V EA+ +F +M++F + V +N +++ LC+ N KA+ + ++M+
Sbjct: 196 ITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGR 255
Query: 235 FRCPPDVYTYTILISSY 251
F+ PD+ +YTIL+ +
Sbjct: 256 FK--PDIKSYTILLEGW 270
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+AR VK + ++M + G + S L+ L + V +A F +MK R +
Sbjct: 200 YARARKVKEAVESFEKMEKFGFQ--MGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFK 257
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD+ +Y +++ + N K + +M GF PDV T+ ILI+++CK
Sbjct: 258 PDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFE--PDVVTFGILINAHCK 307
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + N+ L + +EM G V T + LI + +EA+ F+ M+ +
Sbjct: 270 WGQDQNLLKLNEVYREMRDEGFEPDVVTFGI--LINAHCKARKYDEAIRLFHEMEAKNIK 327
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P + + +IN L +A EQ++L GF P+ TY ++ +YC
Sbjct: 328 PSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGF--APEAPTYNAVVGAYC 376
>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 614
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 148 VKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
+ WD + EM RG +++T S+ L+ L + V++A+ ++K +P++Y
Sbjct: 395 ISDAWDLVNEMHNRGQPADVITYSS---LLDALCKNHQVDKAITLITKIKDQGIQPNIYT 451
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
Y ++++ LC+ G A+ + + + + G+ DV Y ++++ CK G+
Sbjct: 452 YTILVDGLCKNGRLKDAQAVYQDLLIKGYHL--DVKMYNVMVNGLCKEGL 499
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEM-SRRGNGELVTTSTVT--CLIKVLGEEGLVNEALAT 191
CK+ ++ A D EM +R ++VT +T+ CLI G + EA+
Sbjct: 215 CKDKLVIHAS--------DLCSEMIVKRIFPDVVTYTTLIYGCLI-----VGRLKEAVGL 261
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F +M +PDVY +N++++ LC+ G KAR +L M G ++ TY L+ Y
Sbjct: 262 FNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQG--VDSNIVTYNSLMDGY 319
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
++ R+ +G LV + V +I L ++ LV A M R PDV Y +I
Sbjct: 190 QVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGC 249
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
VG +A L QM L + PDVYT+ IL+ CK G
Sbjct: 250 LIVGRLKEAVGLFNQMLLKNIK--PDVYTFNILVDGLCKEG 288
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T+T LIK L G V EAL + D +Y +IN LC+ G A +L
Sbjct: 134 TVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLR 193
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
+++ G P+V Y +I S CK
Sbjct: 194 KID--GLLVQPNVVMYNTIIDSLCK 216
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A++ +M+ + +PD++ +N++IN C +G+ N A +L ++ GF PD T T L
Sbjct: 83 AISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIFKLGFH--PDTVTITTL 140
Query: 248 ISSYCKYG 255
I C G
Sbjct: 141 IKGLCLNG 148
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
N+A F M + PDV +Y+++IN LC+ ++A L ++M P+ TY
Sbjct: 326 NKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSM--APNTVTYN 383
Query: 246 ILISSYCKYG 255
LI KYG
Sbjct: 384 SLIDGLLKYG 393
>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 150 GLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
GLW FL M RG T T LI L +EG V EA M PD+
Sbjct: 230 GLWKEVTWFLNLMVDRGFSP--DAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDIL 287
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN ++N LC VG A L E + G + +V++Y ILI+ YCK
Sbjct: 288 TYNTLMNGLCLVGQLEDATKLFESLADRGIKL--NVFSYNILINGYCK 333
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D EM G G L + L+ L G + EAL F M+ DVY YN +I+
Sbjct: 167 DMFSEMI--GAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIH 224
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L R G + + + L M GF PD +T+TILI CK G
Sbjct: 225 GLSRAGLWKEVTWFLNLMVDRGF--SPDAFTFTILIDGLCKEG 265
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G+ + ST L+ L + G + EA+ F +K+ +P++ ++++++ +CR G +A
Sbjct: 386 GQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEA 445
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+++ G PD Y ILI+ C GM
Sbjct: 446 WKQFDEISKNGLE--PDTIAYNILINGLCNKGM 476
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
TVT L+K + E + +A+ F M + D Y ++IN LC+ A L E+M
Sbjct: 79 TVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIKLHEKM 138
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQT 258
+ C DV+TY ++I S CK GM T
Sbjct: 139 K---GNCKGDVFTYGMIIDSLCKDGMTT 163
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L ++G+ EAL F M PDV Y+ +++ LCR G +A ++M
Sbjct: 148 TYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEM 207
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
E G DVYTY LI + G+
Sbjct: 208 EGRGI--SADVYTYNSLIHGLSRAGL 231
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R +K +F KEM RG V T LI L GL E M
Sbjct: 191 LCRFGRLKEALEFFKEMEGRGISADVYT--YNSLIHGLSRAGLWKEVTWFLNLMVDRGFS 248
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD + + ++I+ LC+ G +A+ +LE M G PD+ TY L++ C G
Sbjct: 249 PDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKE--PDILTYNTLMNGLCLVG 300
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R ++ W E+S+ NG T LI L +G+++EA+ ++M++ C PD
Sbjct: 438 RAGKLEEAWKQFDEISK--NGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPD 495
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+NV+I L + ++A LLE+M F V + + ++S+
Sbjct: 496 SITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLASF 543
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 14/117 (11%)
Query: 148 VKGLW---------DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
VKG+W EM+ +G T LI L + A+ +MK
Sbjct: 84 VKGVWMENGIPDAVQLFDEMTEKG--LFGDAKTYGILINGLCKARKTGLAIKLHEKMKG- 140
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ DV+ Y ++I++LC+ G +A + +M G PDV Y+ L+ C++G
Sbjct: 141 NCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGIL--PDVVVYSSLMDGLCRFG 195
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + +A F + + +V++YN++IN C+ ++A L E+M G + P
Sbjct: 300 GQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLK--PSTV 357
Query: 243 TYTILISSYCKYG 255
TY LI + C+ G
Sbjct: 358 TYNTLIGALCQSG 370
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA F M+ +P YN +I ALC+ G A+ L +M+ G + TY
Sbjct: 337 IDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLK--LSTY 394
Query: 245 TILISSYCKYG 255
+L+ CK G
Sbjct: 395 CVLLDGLCKNG 405
>gi|255685744|gb|ACU28361.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
Length = 178
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G V+EA F M + C D Y YN +I+A + G
Sbjct: 83 RFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKV 142
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 143 DEALALFKRMEEEE-GCDQTVYTYTILISG 171
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+NE A F M + +P+V Y V+I+ + G+ A LL +M GF PDV TY
Sbjct: 2 LNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFN--PDVVTY 59
Query: 245 TILISSYCKYG 255
+++++ CK G
Sbjct: 60 SVVVNGLCKNG 70
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ + M R+G+ V TV LI + G V +A+ +RM PDV Y+VV+
Sbjct: 6 YAVFENMIRKGSKPNVAIYTV--LIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVV 63
Query: 212 NALC-----------------------------------RVGNFNKARFLLEQMELPGFR 236
N LC + G ++A L E+M G
Sbjct: 64 NGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKG-- 121
Query: 237 CPPDVYTYTILISSYCKYG 255
C D Y Y LI ++ K+G
Sbjct: 122 CTRDSYCYNALIDAFTKHG 140
>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
Length = 597
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T T +I V G+ +L F MK C+P++ Y ++NA R G KA + E
Sbjct: 277 TETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFE 336
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
+M+ G PDVY Y L+ +Y + G+
Sbjct: 337 EMQQAGHE--PDVYAYNALMEAYSRAGL 362
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ EGL +A F M+Q PDVYAYN ++ A R G A + M
Sbjct: 314 TYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLM 373
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQ 257
E G C PD +Y IL+ ++ + G+
Sbjct: 374 EHMG--CEPDRASYNILVDAFGRAGLH 398
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ G GL EA A F +KQ RP + ++ ++++A R GN + ++ Q+ G
Sbjct: 388 LVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSG 447
Query: 235 FRCPPDVYTYTILISSYCKYG 255
R PD + ++++Y + G
Sbjct: 448 LR--PDTFALNAMLNAYGRAG 466
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
FAR + + +EM + G+ V L++ GL A F M+ C
Sbjct: 321 AFAREGLCEKAEEVFEEMQQAGHEPDVYA--YNALMEAYSRAGLPQGASEIFSLMEHMGC 378
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD +YN++++A R G +A ++++ G R P + ++ +L+S++ + G
Sbjct: 379 EPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMR--PTMKSHMLLLSAHARSG 431
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G++ ++EA A + + + RC P Y +++ A C G ++A ++ +M+ G
Sbjct: 178 LIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNG 237
Query: 235 FRCPPDVYTYTILISSYCK 253
PP Y + K
Sbjct: 238 I--PPTATVYNAYLDGLLK 254
>gi|413932624|gb|AFW67175.1| hypothetical protein ZEAMMB73_588183 [Zea mays]
Length = 520
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 94/238 (39%), Gaps = 40/238 (16%)
Query: 45 IESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLKQRILK------------KEADNIAN 92
+E + ++L++ R + ++ R RTP + L KEA+ +
Sbjct: 151 VEDLLEILRAYTEKHLTHMRKLAKKRRVRMRTPPETDALNVLLDAFCKCGMVKEAEAVFG 210
Query: 93 NV-------------LVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMG 139
V L G R+P+K + + + H E F + C G
Sbjct: 211 RVKRKLLGNAETYSTLFFGWCRARDPKKAMKVLEEMIQMKHTPESFTYVAAIISFCS-AG 269
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELV---TTSTVTCLIKVLGEEGLVNEALATFYRMK 196
+V + + L++F+ R G + T T + +I L + + E M+
Sbjct: 270 LV----SEARELFEFM-----RTEGLTISSPTAKTYSIMIVALAKADRMEECFELLSDMR 320
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
C PDV Y +I +C VG + A +L++M GF PPD+ TY ++ +C +
Sbjct: 321 SCGCMPDVTTYKDLIEGMCLVGKLDAAYRVLDEMGRAGF--PPDIVTYNCFLNVFCSH 376
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 13/136 (9%)
Query: 122 VERFFHFFHNEVTCKEMGIVFARGNNVKGL---------WDFLKEMSRRGNGELVTTSTV 172
+E F + +C M V + ++G+ + L EM R G + T
Sbjct: 309 MEECFELLSDMRSCGCMPDVTTYKDLIEGMCLVGKLDAAYRVLDEMGRAGFPPDIVT--Y 366
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
C + V ++AL RM + C P V+ YN+++ +G ++A + +E+
Sbjct: 367 NCFLNVFCSHRKADDALELCERMIEAHCEPSVHTYNMMMMMFFEMGEAHRALDIC--LEM 424
Query: 233 PGFRCPPDVYTYTILI 248
RC + TY I+I
Sbjct: 425 DKRRCQRAIDTYEIMI 440
Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T + L+ + G+V EA A F R+K+ + + Y+ + CR + KA +LE
Sbjct: 186 TDALNVLLDAFCKCGMVKEAEAVFGRVKR-KLLGNAETYSTLFFGWCRARDPKKAMKVLE 244
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
+M + P+ +TY I S+C G+
Sbjct: 245 EM--IQMKHTPESFTYVAAIISFCSAGL 270
>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
brasiliensis]
Length = 427
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + G V+ A+ + RM PD+ YN +I LC+ G+ +A L+++M
Sbjct: 245 TFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEM 304
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G + PD TYT LI CK G
Sbjct: 305 SMKGLK--PDKITYTTLIDGCCKEG 327
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
++G + A + F + ++ RP V +YN ++N R+G+ ++ L M G + PD
Sbjct: 150 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQ--PD 207
Query: 241 VYTYTILISSYCK 253
VYTY++LI+ CK
Sbjct: 208 VYTYSVLINGLCK 220
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PDVY Y+V+IN LC+ + A L ++M + G P+ T+T LI +CK G
Sbjct: 205 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGL--VPNGVTFTTLIDGHCKNG 257
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++K + EMS +G T T LI +EG ++ A RM Q
Sbjct: 288 LCKKGDLKQAHHLIDEMSMKGLKP--DKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIX 345
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D AY +I+ LC+ G A +L +M G + P+ TYT++I+ +CK G
Sbjct: 346 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK--PNXRTYTMIINEFCKKG 397
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI L +EG +A M +P+ Y ++IN C+ G+ K LL++M+
Sbjct: 352 TALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQR 411
Query: 233 PGFRCPPDVYTYTILISS 250
G P V TY +L++
Sbjct: 412 DGH--VPSVVTYNVLMNG 427
>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
protein [Medicago truncatula]
gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
protein [Medicago truncatula]
Length = 970
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T + V+ L+ L ++G ++ A ++ +F P+++ YN +INALC+ + +KA L
Sbjct: 322 TEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLY 381
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ M P + TY+ILI S+CK GM
Sbjct: 382 KNMH--SMNLPLNDVTYSILIDSFCKRGM 408
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI + G+++ A + F RM + R +Y YN +IN C+ G+ + A FL +M
Sbjct: 395 TYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKM 454
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G P T+T LIS YCK
Sbjct: 455 INEGLE--PTATTFTTLISGYCK 475
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L + EA F M + + +P YNV+I C+ N +KA LLE M
Sbjct: 500 TFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDM 559
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PD YTY LIS C G
Sbjct: 560 LHNGL--VPDTYTYRPLISGLCSTG 582
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
+ ++K L+ LK+M +G L S + T +I +EG ++ M +C P
Sbjct: 650 KQQDMKRLFGLLKKMYDQG---LRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFP 706
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+V Y +N LC+VG ++A L E+M P+ TY + S K G
Sbjct: 707 NVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANI--SPNSVTYGCFLDSLTKEG 757
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T +T T LI ++ V +A + M + P VY + +I LC +A L
Sbjct: 462 TATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLF 521
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++M + P TY ++I YCK
Sbjct: 522 DEM--VERKIKPTEVTYNVMIEGYCK 545
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ N+K D EM + G L T+T LI+ + G + EA M +
Sbjct: 753 LTKEGNMKEATDLHHEMLK---GLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIF 809
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y+ +I CR G+ A L + M G PD + +LI C G
Sbjct: 810 PDCITYSTIIYEHCRSGDVGAAVELWDTMLRKGVE--PDSVAFNLLIYGCCVNG 861
>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1071
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG +V T +I L GL+NE++ +M + PDV ++V+IN CRVG
Sbjct: 370 RMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKI 429
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ ++ +M G P+ YT LI +YCK G
Sbjct: 430 KNVKEIICKMYKAGL--APNSIIYTTLIYNYCKTG 462
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 170 STVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
S TC L+ L +E V F M R PDV +N++IN LC G KA +LL
Sbjct: 132 SVYTCNMLLGKLVKERKVGAVWLFFKEMLARRVCPDVSTFNILINVLCVEGKLKKAGYLL 191
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++ME G+ P V TY +++ YCK G
Sbjct: 192 KKMEESGY--VPSVVTYNTVLNWYCKKG 217
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
TC + + V +W F KEM +RR ++ ST LI VL EG + +A
Sbjct: 135 TCNMLLGKLVKERKVGAVWLFFKEMLARRVCPDV---STFNILINVLCVEGKLKKAGYLL 191
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+M++ P V YN V+N C+ G + A L++QM G D TY +L+ C
Sbjct: 192 KKMEESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIE--ADACTYNMLVDDLC 249
Query: 253 K 253
K
Sbjct: 250 K 250
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 154 FLKEMSRR--GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
LK+M +R E+ S + +K EG + A F M P+ YN +I
Sbjct: 260 LLKKMRKRMISPNEITYNSIINGFVK----EGKIGAATRIFQEMSMLNLLPNCVTYNALI 315
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ C GNF +A +LE ME G + P+ +Y+ L++ C++
Sbjct: 316 DGHCHDGNFEQALTILEMMEATGPK--PNEVSYSALLNGLCRHA 357
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
F MS+ GN + + T C+I G G +A + F M + P + Y ++ A
Sbjct: 505 FFHHMSKIGN--VPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKA 562
Query: 214 LCRVGNFNKARFLLEQME-LPGFRCPPDVYTY-TILISSYCKYGMQT 258
LCR G F +A+ LL+++ +P D TY TIL+ ++ K GM T
Sbjct: 563 LCRAGKFKEAKRLLDKLHYIPS---AVDTVTYNTILVETF-KSGMLT 605
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI +G +AL M+ +P+ +Y+ ++N LCR F ++ +LE+M
Sbjct: 310 TYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERM 369
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
+ G YT +I C+ G+
Sbjct: 370 RMNGM--IVGCIAYTAMIDGLCRNGL 393
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
N+ L+D +M+ T +I VL V E+ + M + C PD
Sbjct: 824 NIMNLFDIFPDMT-----------THDSIISVLSRVSTVQESHLLLHEMLERGCIPDRRQ 872
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGF 235
Y ++N +CR+G+ + A L ++ME G
Sbjct: 873 YIALVNRMCRMGHIHGAFKLKDEMEALGI 901
>gi|255569207|ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535151|gb|EEF36831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 687
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRC 237
L ++G + EA TF M +F PD + Y ++I C+VG+ NKA ++L E ++ F
Sbjct: 366 LCKDGNMLEASKTFQEMSEFGLYPDCFCYTIIIGGYCKVGDINKAFQYLGEMLK---FGI 422
Query: 238 PPDVYTYTILISSYCKYG 255
P V TYT+LI++ CK G
Sbjct: 423 TPSVTTYTLLINACCKSG 440
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +N+A M +F P V Y ++INA C+ G+ A +LL++M L G PDV
Sbjct: 405 GDINKAFQYLGEMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGL--IPDVV 462
Query: 243 TYTILISSYCKYG 255
T+ LI + K G
Sbjct: 463 TFNCLIDGFGKKG 475
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 102 YRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRR 161
Y KV+L +N E + + F + C + R + + WD L+ M +
Sbjct: 194 YVTESKVSLALNLIHEI-----KLLNIFPSMGVCNSLLKALLRSHQLDLAWDILEGM--Q 246
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G + S ++ I+ EG + MK + + DV AY +VI+ALC++
Sbjct: 247 SFGMHLNASILSLFIESYCAEGNIQSGWKILMEMKNYGIKADVIAYTIVIDALCKISCVK 306
Query: 222 KARFLLEQM 230
A LL +M
Sbjct: 307 VATSLLFKM 315
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 141 VFARG--NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
+ ARG N K D L E+ RRG V T T +I ++G EA + M +
Sbjct: 506 LIARGYPNEAK---DILHELIRRGLSPDVMT--FTDVIDGFSKKGNFEEAFLVWSYMSER 560
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PDV + ++N CR ++A L +M G + PD+ Y LI +C G
Sbjct: 561 HVKPDVVTCSALLNGYCRARRMDEANALFLKMLDAGLK--PDLVLYNNLIHGFCSAG 615
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
F RP+++ Y+ + LC+ GN +A ++M G PD + YTI+I YCK G
Sbjct: 350 FNVRPNIFVYSSFMTKLCKDGNMLEASKTFQEMSEFGLY--PDCFCYTIIIGGYCKVG 405
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T CLI G++G + +A M+ PD YN +I++L G N+A+ +L ++
Sbjct: 463 TFNCLIDGFGKKGYLQKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHEL 522
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PDV T+T +I + K G
Sbjct: 523 IRRGL--SPDVMTFTDVIDGFSKKG 545
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G T T LI L G NEA + + + PDV + VI+ + GNF
Sbjct: 488 RSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTFTDVIDGFSKKGNF 547
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+A + M + PDV T + L++ YC+
Sbjct: 548 EEAFLVWSYMSERHVK--PDVVTCSALLNGYCR 578
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+W ++ E R ++VT S L+ ++EA A F +M +PD+ YN +
Sbjct: 553 VWSYMSE--RHVKPDVVTCSA---LLNGYCRARRMDEANALFLKMLDAGLKPDLVLYNNL 607
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
I+ C GN N A L+ M GF P++ T+
Sbjct: 608 IHGFCSAGNMNAACNLVAMMIDDGFL--PNITTH 639
>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
urticoides]
Length = 412
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 18/124 (14%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGLVNEALAT 191
CKE ++ + GL+D EM +G NG T T LI + G V+ A+
Sbjct: 204 CKE-----SKMDGANGLFD---EMLVKGLVPNG-----VTFTTLIDGHCKNGRVDLAMEI 250
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+ +M PD+ YN +I LC+ G+ +A L+++M + G + PD +TYT LI
Sbjct: 251 YKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK--PDKFTYTTLIDGC 308
Query: 252 CKYG 255
CK G
Sbjct: 309 CKEG 312
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++K D + EMS +G T T LI +EG ++ A RM Q R
Sbjct: 273 LCKKGDLKQAHDLIDEMSMKGLKP--DKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIR 330
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D AY +I+ LC+ G A +L +M G + PD TYT++++ +CK G
Sbjct: 331 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK--PDTGTYTMIVNEFCKKG 382
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
++G + A + F + ++ RP V +YN ++N R+G+ ++ L M G + PD
Sbjct: 135 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQ--PD 192
Query: 241 VYTYTILISSYCK 253
VYTY++LI+ CK
Sbjct: 193 VYTYSVLINGLCK 205
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PDVY Y+V+IN LC+ + A L ++M + G P+ T+T LI +CK G
Sbjct: 190 QPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGL--VPNGVTFTTLIDGHCKNG 242
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI L +EG +A M +PD Y +++N C+ G+ K LL++M+
Sbjct: 337 TALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQR 396
Query: 233 PGFRCPPDVYTYTILISS 250
G P V TY +L++
Sbjct: 397 DGH--APSVVTYNVLMNG 412
>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
camara]
Length = 431
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 18/124 (14%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGLVNEALAT 191
CKE ++ + GL+D EM +G NG T T LI + G V+ A+
Sbjct: 223 CKE-----SKMDGANGLFD---EMLVKGLVPNG-----VTFTTLIDGHCKNGRVDLAMEI 269
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+ +M PD+ YN +I LC+ G+ +A L+++M + G + PD +TYT LI
Sbjct: 270 YKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK--PDKFTYTTLIDGC 327
Query: 252 CKYG 255
CK G
Sbjct: 328 CKEG 331
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++K D + EMS +G T T LI +EG ++ A RM Q R
Sbjct: 292 LCKKGDLKQAHDLIDEMSMKGLKP--DKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIR 349
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D AY +I+ LC+ G A +L +M G + PD TYT++++ +CK G
Sbjct: 350 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK--PDTGTYTMIVNEFCKKG 401
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
++G + A + F + ++ RP V +YN ++N R+G+ ++ L M G + PD
Sbjct: 154 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQ--PD 211
Query: 241 VYTYTILISSYCK 253
VYTY++LI+ CK
Sbjct: 212 VYTYSVLINGLCK 224
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PDVY Y+V+IN LC+ + A L ++M + G P+ T+T LI +CK G
Sbjct: 209 QPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGL--VPNGVTFTTLIDGHCKNG 261
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI L +EG +A M +PD Y +++N C+ G+ K LL++M+
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQR 415
Query: 233 PGFRCPPDVYTYTILISS 250
G P V TY +L++
Sbjct: 416 DGH--APSVVTYNVLMNG 431
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+ + ++EM RG G + T L+ +EG +++ L M P+V Y +
Sbjct: 296 VGELVEEM--RGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTL 353
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
IN +C+ GN ++A + +QM + G R P+ TYT LI +C+ G+
Sbjct: 354 INCMCKAGNLSRAVEIFDQMRVRGLR--PNERTYTTLIDGFCQKGL 397
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+EVT + F + N+ L EM G G T T LI + + G ++ A+
Sbjct: 311 DEVTYNTLVNGFCKEGNLHQGLVLLSEMV--GKGLSPNVVTYTTLINCMCKAGNLSRAVE 368
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F +M+ RP+ Y +I+ C+ G N+A +L +M + GF P V TY L+
Sbjct: 369 IFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGF--SPSVVTYNALVHG 426
Query: 251 YCKYG 255
YC G
Sbjct: 427 YCFLG 431
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 141 VFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
V ++G+ KGL F+++M + G + +VT +T LI ++ V EA+A M
Sbjct: 217 VVSQGDLEKGLG-FMRKMEKEGISPNVVTYNT---LIDASCKKKKVKEAMALLRAMAVGG 272
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ +YN VIN LC G ++ L+E+M G PD TY L++ +CK G
Sbjct: 273 VAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGL--VPDEVTYNTLVNGFCKEG 326
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI ++GL+NEA M P V YN +++ C +G +A +L M
Sbjct: 384 TYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGM 443
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G PPDV +Y+ +I+ +C+
Sbjct: 444 VERGL--PPDVVSYSTVIAGFCR 464
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R + + +EM +G L T T + LI+ L + + EA F M +
Sbjct: 462 FCRERELGKAFQMKEEMVEKG--VLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLP 519
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y +INA C G +KA L ++M GF PD TY++LI+ K
Sbjct: 520 PDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFL--PDNVTYSVLINGLNK 569
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
++A F M + P+VY YNV+I + G+ K + +ME G P+V TY
Sbjct: 189 DDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGI--SPNVVTYN 246
Query: 246 ILISSYCK 253
LI + CK
Sbjct: 247 TLIDASCK 254
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+V L+K +GL+NEA F M Q +P+ YN++I+ R GN +KA L ++
Sbjct: 609 SVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMEL 668
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
E F C L+ + + GM
Sbjct: 669 EHSSFAC--HTVAVIALVKALAREGM 692
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G V EA+ M + PDV +Y+ VI CR KA + E+M G PD
Sbjct: 431 GRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVL--PDTV 488
Query: 243 TYTILISSYC 252
TY+ LI C
Sbjct: 489 TYSSLIQGLC 498
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L+ M RG ++V+ STV I E + +A M + PD Y+ +I
Sbjct: 439 ILRGMVERGLPPDVVSYSTV---IAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQ 495
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC +A L +M G PPD TYT LI++YC G
Sbjct: 496 GLCLQQKLVEAFDLFREMMRRGL--PPDEVTYTSLINAYCVDG 536
>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEV-TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS 170
I++A+ Y +E+ F +V TC + F R +L M G ++T
Sbjct: 396 IDEASMIYDVMEK--KGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMME--GGVRLSTV 451
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ T LI V +EG V EA F M +P+ YNV+I A C+ G +AR L M
Sbjct: 452 SYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANM 511
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
+ G PD YTYT LI C
Sbjct: 512 KANGM--DPDSYTYTSLIHGEC 531
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + + G+ LK M + +G + T T LI++ + G +N+ F M++
Sbjct: 250 YLKHRDFSGVEKILKVMKK--DGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERGIE 307
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D++ Y +I+ CR GN +A L +++ G P +TY LI CK G
Sbjct: 308 SDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGL--LPSSHTYGALIDGVCKVG 359
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I ++G V EA + MK PD Y Y +I+ C N ++A L +M
Sbjct: 487 TYNVMIYAYCKQGKVKEARKLWANMKANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEM 546
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L G + TYT++IS K G
Sbjct: 547 GLKGL--DQNSVTYTVMISGLSKAG 569
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+ EM +G +T LI +G+++EA + M++ + DV+ N + +
Sbjct: 367 LMNEMQSKGVN--ITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADVFTCNTIASC 424
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R+ +++A+ L +M G R +YT LI YCK G
Sbjct: 425 FNRLKRYDEAKQWLFRMMEGGVRLST--VSYTNLIDVYCKEG 464
>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 876
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F++W++R F H+ T M + R + L +M + G V T
Sbjct: 363 ALNFFYWLKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNR-- 420
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G +N+A+ F M++ C PD Y +I+ + G + A + ++M+ G
Sbjct: 421 LIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAG 480
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD +TY+++I+ K G
Sbjct: 481 LS--PDTFTYSVIINCLGKAG 499
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT + + R N + D EM R G + VT T LI + + G ++ AL
Sbjct: 414 NVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCT---LIDIHAKAGFLDFAL 470
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
+ RM+ PD + Y+V+IN L + G+ A L +M G C P++ TY I+I+
Sbjct: 471 EMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQG--CVPNLVTYNIMIA 528
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 150 GLWDFLKEMSRR--GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G DF EM +R G T T + +I LG+ G + A F M + C P++ Y
Sbjct: 464 GFLDFALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTY 523
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS--SYCKY 254
N++I + N+ A L M+ GF+ PD TY+I++ +C Y
Sbjct: 524 NIMIALQAKARNYQSALKLYRDMQSAGFQ--PDKVTYSIVMEVLGHCGY 570
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT M + A+ N + ++M G + VT S V ++VLG G ++EA
Sbjct: 519 NLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIV---MEVLGHCGYLDEAE 575
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
A F MK+ PD Y ++++ + GN KA + M G R P+V T L+S
Sbjct: 576 AVFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQTMLNTGLR--PNVPTCNSLLS 633
Query: 250 SYCK 253
++ +
Sbjct: 634 AFLR 637
>gi|222623443|gb|EEE57575.1| hypothetical protein OsJ_07927 [Oryza sativa Japonica Group]
Length = 520
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV---TCLIKVLGEEGLVNEALATFYRMKQF 198
F R ++ WDF +M +RG+ + V T ++ LG G + +A F M +
Sbjct: 298 FFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKE 357
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
C P V YN +I +C+ GN A + + E R P ++++ ++L+ ++GM
Sbjct: 358 GCAPSVATYNALIQVICKKGNVEDAVTVFDVFE----RAPTEIFSLSLLVQ--LQFGM 409
>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
Length = 592
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+EM RG L T +I+ + +EG+V A + C PDV +YN+++ A
Sbjct: 239 LLEEMLARG--LLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRA 296
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
G +++ L+ +M G C P+ TY+ILISS C++G
Sbjct: 297 FLNQGKWDEGEKLVAEMFSRG--CEPNKVTYSILISSLCRFG 336
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L +EG ++ A+ M C PD+ YN ++ ALC+ GN N+A + + L G
Sbjct: 363 LISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNK--LRG 420
Query: 235 FRCPPDVYTYTILISSYCKYG 255
CPP+V +Y +IS+ G
Sbjct: 421 MGCPPNVSSYNTMISALWSCG 441
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 149 KGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
+G WD + EM RG T ++ LI L G ++EA++ M + PD
Sbjct: 300 QGKWDEGEKLVAEMFSRGCEPNKVTYSI--LISSLCRFGRIDEAISVLKVMIEKELTPDT 357
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y+Y+ +I+ALC+ G + A +++ M G C PD+ Y ++++ CK G
Sbjct: 358 YSYDPLISALCKEGRLDLAIGIMDYMISNG--CLPDIVNYNTILAALCKNG 406
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI+ EG +NEA+ M PD+Y YN +I +C+ G +A L+
Sbjct: 216 TVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELI 275
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G C PDV +Y IL+ ++ G
Sbjct: 276 TSLTSKG--CEPDVISYNILLRAFLNQG 301
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE R + G+ D++ NG L ++ L + G N+AL F +
Sbjct: 368 CKE-----GRLDLAIGIMDYMIS-----NGCLPDIVNYNTILAALCKNGNANQALEIFNK 417
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
++ C P+V +YN +I+AL G+ ++A ++ M G PD TY LIS C+
Sbjct: 418 LRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGID--PDEITYNSLISCLCRD 475
Query: 255 GM 256
G+
Sbjct: 476 GL 477
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L +GLV EA+ M+Q RP V +YN+V+ LC+V + A + +M
Sbjct: 464 TYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEM 523
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQT 258
G C P+ TY +LI G +T
Sbjct: 524 IEKG--CRPNETTYILLIEGIGFAGWRT 549
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + N ++ L M RG L T +I L + AL ++ C
Sbjct: 157 FCKVNQIEAATQVLNRMKARGF--LPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCM 214
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
P V Y ++I A G N+A LLE+M G PD+YTY +I CK GM
Sbjct: 215 PTVITYTILIEATIVEGGINEAMKLLEEMLARGLL--PDMYTYNAIIRGMCKEGM 267
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
PDV+AYN VI+ C+V A +L +M+ GF PD+ TY I+I S C
Sbjct: 144 EPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFL--PDIVTYNIMIGSLC 193
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
RG G S+ +I L G + AL M PD YN +I+ LCR G
Sbjct: 419 RGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLV 478
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+A LL+ ME GFR P V +Y I++ CK
Sbjct: 479 EEAIGLLDDMEQSGFR--PTVISYNIVLLGLCK 509
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM---E 231
L++ +G +E M C P+ Y+++I++LCR G ++A +L+ M E
Sbjct: 293 LLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKE 352
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
L PD Y+Y LIS+ CK G
Sbjct: 353 L-----TPDTYSYDPLISALCKEG 371
>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Vitis vinifera]
Length = 686
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+ CKE I A D + M +RG V T T L E ++EA+
Sbjct: 368 DALCKEGMIAIAH--------DVVDMMIKRGVEPDVVTYTALMDGHCLRSE--MDEAVKV 417
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F M C P+V +YN++IN C++ +KA LLEQM L G D TY LI
Sbjct: 418 FDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGL--IADTVTYNTLIHGL 475
Query: 252 CKYG 255
C G
Sbjct: 476 CHVG 479
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T LI+ L EG + EAL F + +PDV Y ++N LC+VGN + A LL
Sbjct: 221 TTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRS 280
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
M C P+V Y +I S CK
Sbjct: 281 MVQK--NCRPNVIAYNTIIDSLCK 302
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
+G++ T L+ L + + EA+ ++ D+ YN+ I+ +CR G
Sbjct: 493 ASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELE 552
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
AR L + G + PDV TY I+I CK G+
Sbjct: 553 AARDLFSNLSSKGLQ--PDVRTYNIMIHGLCKRGL 585
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + G + A+ M Q CRP+V AYN +I++LC+ +A L +M
Sbjct: 257 TYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEM 316
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
G PD++TY LI + C
Sbjct: 317 ITKGI--SPDIFTYNSLIHALC 336
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L++MS +G + T T LI L G + A+A F+ M PD+ Y ++++
Sbjct: 452 LLEQMSLQG--LIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDY 509
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ + +A LL+ +E G D+ Y I I C+ G
Sbjct: 510 LCKNHHLAEAMVLLKAIE--GSNLDADILVYNIAIDGMCRAG 549
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A + ++ + C+PD +N +I LC G +A L ++ GF+ PDV TY L
Sbjct: 204 AFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQ--PDVVTYGTL 261
Query: 248 ISSYCKYG 255
++ CK G
Sbjct: 262 MNGLCKVG 269
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++AL++F RM P + ++ ++ ++ +++ L QM+ F PPDVYT
Sbjct: 131 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMD--SFGIPPDVYTL 188
Query: 245 TILISSYC 252
ILI+S+C
Sbjct: 189 NILINSFC 196
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L ++ V EA F M PD++ YN +I+ALC + + LL +M
Sbjct: 296 IIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEM--VN 353
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
+ P+V ++ ++ + CK GM
Sbjct: 354 SKIMPNVVVFSTVVDALCKEGM 375
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ D +S +G V T + +I L + GL++EA F +M + C
Sbjct: 545 MCRAGELEAARDLFSNLSSKGLQPDVRTYNI--MIHGLCKRGLLDEANKLFRKMDENGCS 602
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
D YN +I R A LL++M GF DV T T+++ G+
Sbjct: 603 RDGCIYNTIIRGFLRSNETFGATQLLQEMLAEGF--SADVSTTTLIVEMLSDDGLD 656
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ L +EG++ A M + PDV Y +++ C ++A + + M G
Sbjct: 366 VVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG 425
Query: 235 FRCPPDVYTYTILISSYCK 253
C P+V +Y ILI+ YC+
Sbjct: 426 --CVPNVRSYNILINGYCQ 442
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
L+ +M F PDVY N++IN+ C + A +L ++ G C PD T+ LI
Sbjct: 170 LSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLG--CQPDNTTFNTLI 227
Query: 249 SSYCKYG 255
C G
Sbjct: 228 RGLCVEG 234
>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
Length = 545
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T + L+ EG V+ A+ F RM C P++ +YN++I LCR G KA
Sbjct: 322 GCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKA 381
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
F E+ L R PDVYT+ + C+
Sbjct: 382 YFYFEK--LLQRRLCPDVYTFNAFLHGLCQ 409
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ V + LK+M + L TT T T L+ L + G ++EA+A +M +
Sbjct: 52 LCKAERVDDAFQLLKKMDEKKC--LPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNS 109
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P + Y VVI+ L + G +AR + +++ G C PD + YT LI CK G
Sbjct: 110 PTLKTYTVVIDGLSKAGRVEEARRIF--VDMLGNGCRPDAFVYTALIKGLCKSG 161
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L++M +GN + T TV +I L + G V EA F M CRPD + Y +I L
Sbjct: 100 LEQMVEKGNSPTLKTYTV--VIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGL 157
Query: 215 CRVGNFNKARFLLEQMELPGFRCP--PDVYTYTILISSYCKYG 255
C+ G +A L ++ PDV TYT LI CK G
Sbjct: 158 CKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAG 200
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G +V+T T ++ L + G V EA ATF M++ C V Y+ +++ C GN +
Sbjct: 286 SGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSA 345
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A L +M G C P++ +Y I+I C+ G
Sbjct: 346 AVELFRRMLDRG--CEPNLVSYNIIIRGLCRAG 376
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L E ++EA + R + C PD YNV I+ LC+ + A LL++M+
Sbjct: 11 TVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDE 70
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+C P TYT L+ K G
Sbjct: 71 K--KCLPTTVTYTALVDGLLKAG 91
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C PD+ A+ VVIN LCR ++A +LE+ G C PD TY + I CK
Sbjct: 3 CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAG--CEPDYVTYNVFIDGLCK 54
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATF----YRMKQFRCRPDVYAYNVVINALCRV 217
GNG T LIK L + G EA A + R PDV Y +I+ LC+
Sbjct: 140 GNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKA 199
Query: 218 GNFNKARFLLEQMELP-GFRCPPDVYTYTILISSYCKYG 255
G +AR + + + GF PD TYT +I CK G
Sbjct: 200 GRILEARQVFDDEAVERGF--IPDAVTYTSIIDGLCKLG 236
>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 630
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
I + EG A+ + MK C+PD + YN++I++LC G +A LL +ME+ G
Sbjct: 286 IDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISG- 344
Query: 236 RCPPDVYTYTILISSYCK 253
C +V TY LI +CK
Sbjct: 345 -CARNVITYNTLIDGFCK 361
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 12/170 (7%)
Query: 86 EADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARG 145
+ D N+L+ YR + LG+ + E N +T + F +
Sbjct: 311 QPDEFTYNMLI-DSLCYRGKLQEALGLLREMEISGCA-------RNVITYNTLIDGFCKN 362
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
++ + +M +G + T LI L + V EA +M +PD +
Sbjct: 363 KKIEEAEEIFDQMEIQGLSR--NSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKF 420
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN ++ CR G+ KA +++ M G C PD+ TY LI CK G
Sbjct: 421 TYNSMLTYFCREGDIQKAADIVQTMTSNG--CEPDIVTYGTLIGGLCKAG 468
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 16/126 (12%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTS--------------TVTCLIKVLGEEGLVNE 187
F + ++ F+ EMS G + T LI L G + E
Sbjct: 273 FCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQE 332
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
AL M+ C +V YN +I+ C+ +A + +QME+ G + TY L
Sbjct: 333 ALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGL--SRNSVTYNTL 390
Query: 248 ISSYCK 253
I CK
Sbjct: 391 IDGLCK 396
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
EG + +A M C PD+ Y +I LC+ G A LL ++L G P
Sbjct: 432 EGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHA 491
Query: 242 YTYTI 246
Y I
Sbjct: 492 YNPVI 496
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PDV +N++I ALC+ A ++E+M G PD T+T L+ + + G
Sbjct: 190 KPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGL--VPDEKTFTTLMQGFIEEG 242
>gi|359483659|ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
mitochondrial-like [Vitis vinifera]
Length = 686
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T ++ +L + G V E + R++ DV AYN +I C +G +L+ M
Sbjct: 336 TATKVVGILCKAGRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVLKDM 395
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
E+ G C P+V TY IL S YC GM
Sbjct: 396 EIKG--CLPNVDTYNILASGYCDSGM 419
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + NV+ ++ + EM +G T T LI +G V AL M C
Sbjct: 554 FCQDGNVREAFELINEMVD--HGYFPTAPTFNALISAFCGQGKVGSALKLMEDMVGRGCL 611
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQM 230
PD+ +Y+ +++ALC G+F KA L QM
Sbjct: 612 PDMGSYSPMVDALCNKGDFQKAVRLFLQM 640
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 148 VKGLWDFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
VK D +E R+ NG T L+K L + +A MK P+
Sbjct: 209 VKEDIDLAREFYRKKMMMNGVSGDDYTFGILMKGLCLTNRIGDAFKLLQVMKSRGKTPNT 268
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN +I+ALC+ G +AR L+ +M P T+ +LIS+YC+
Sbjct: 269 VIYNTMIHALCKNGKVGRARSLMNEM------VEPSDVTFNVLISAYCQ 311
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
CLI ++G V EA M P +N +I+A C G A L+E M
Sbjct: 548 VCLIHGFCQDGNVREAFELINEMVDHGYFPTAPTFNALISAFCGQGKVGSALKLMEDM-- 605
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C PD+ +Y+ ++ + C G
Sbjct: 606 VGRGCLPDMGSYSPMVDALCNKG 628
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
N + + L+ M RG T +TV +I L + G V A + M + P
Sbjct: 247 NRIGDAFKLLQVMKSRGK----TPNTVIYNTMIHALCKNGKVGRARSLMNEMVE----PS 298
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
+NV+I+A C+ N +A LLE+ GF PDV T T ++ CK G T
Sbjct: 299 DVTFNVLISAYCQEENLVQALVLLEKSFSMGF--VPDVVTATKVVGILCKAGRVT 351
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 176 IKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
+++LG EG + +A + +M + P V Y +I+ C+ GN +A L+ +M
Sbjct: 514 LRILGFCNEGSIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDH 573
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G+ P T+ LIS++C G
Sbjct: 574 GYF--PTAPTFNALISAFCGQG 593
>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
Length = 676
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVN 186
F + TC + F R + + D + MS G +V S I L E G V
Sbjct: 212 FCLDSATCTVVVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSA---WIDGLCERGYVK 268
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYT 245
+A M +P+VY + +I+ LC++G +A R L+ ++ ++ P+V+TYT
Sbjct: 269 QAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYK--PNVHTYT 326
Query: 246 ILISSYCKYG 255
++I YCK G
Sbjct: 327 VMIGGYCKEG 336
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I +EG + A RM + P+ Y +I+ C+ G+F++A L+ +M
Sbjct: 324 TYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKM 383
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+L GF P++YTY +I +CK G
Sbjct: 384 KLEGFL--PNIYTYNAIIGGFCKKG 406
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYA 206
VK + L+EM G G T T LI L + G + A F ++ K +P+V+
Sbjct: 267 VKQAFHVLEEMV--GKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHT 324
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y V+I C+ G +A LL +M G P+ TYT LI +CK G
Sbjct: 325 YTVMIGGYCKEGKLARAEMLLGRMVEQGL--APNTNTYTTLIHGHCKGG 371
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G + ++T T +++ +G F RM + P++ Y+ I+ LC G
Sbjct: 209 AQGFCLDSATCTVVVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVK 268
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A +LE+M G + P+VYT+T LI CK G
Sbjct: 269 QAFHVLEEMVGKGLK--PNVYTHTSLIDGLCKIG 300
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T T +I G + AL F RM Q C PD Y +I++LC+ +A
Sbjct: 492 GLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCKESRLEEA 551
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
R L E M L P DV T L YC+
Sbjct: 552 RALFETM-LDKHLVPCDV-TRVTLAYEYCR 579
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T+T T LI + G + A +MK P++Y YN +I C+ G +A +L
Sbjct: 357 TNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLR 416
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQT 258
G D TYTILI+ +CK G T
Sbjct: 417 MATSQGLHL--DKVTYTILITEHCKQGHIT 444
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI ++G + AL F +M + C PD++ Y +I C+ +++ L ++
Sbjct: 429 TYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKC 488
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQT 258
G P TYT +I+ YC+ G T
Sbjct: 489 LSIGL--VPTKQTYTSMIAGYCRLGKLT 514
>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
Length = 667
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T+T LI L E V+EA+ RM + C+P+V YN ++N +C+ G+ + A LL
Sbjct: 135 TTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLR 194
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M+ + DV+TY+ +I S C+ G
Sbjct: 195 KMDERNVK--ADVFTYSTIIDSLCRDG 219
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T L+ L + G + +AL F +++ + D+ Y ++I +C+ G A
Sbjct: 410 GVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDA 469
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L + G + P+V TYT++IS CK G
Sbjct: 470 WNLFCSLPCKGVK--PNVMTYTVMISGLCKKG 499
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
D L++M R ++ T ST+ I L +G ++ A++ F M+ + + YN ++
Sbjct: 191 DLLRKMDERNVKADVFTYSTI---IDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLV 247
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G +N LL+ M + P+V T+ +LI + K G
Sbjct: 248 GGLCKAGKWNDGVQLLKDM--TSRKIIPNVITFNVLIDVFVKEG 289
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T ++ + + G + AL +M + + DV+ Y+ +I++LCR G + A L ++M
Sbjct: 172 TYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 231
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G + + TY L+ CK G
Sbjct: 232 ETKGIK--SSLVTYNSLVGGLCKAG 254
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+++S+RG + T T + L++ + G + A F M PDV Y ++++
Sbjct: 367 LFRKISKRG--LVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDG 424
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC G KA + E +L + D+ YTI+I CK G
Sbjct: 425 LCDNGKLEKALEIFE--DLQKSKMNLDIVMYTIIIEGMCKGG 464
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 150 GLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
G W+ LK+M+ R V T V LI V +EG + EA + M P+
Sbjct: 254 GKWNDGVQLLKDMTSRKIIPNVITFNV--LIDVFVKEGKLQEANELYKEMITKGISPNTI 311
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
YN +++ C ++A +L+ M C PD+ T+T LI YCK
Sbjct: 312 TYNSLMDGYCMQNRLSEANNMLDLMVRN--NCSPDIVTFTSLIKGYCK 357
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I+ + + G V +A F + +P+V Y V+I+ LC+ G+ ++A LL +ME
Sbjct: 454 TIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 513
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G P+ TY LI ++ + G
Sbjct: 514 DGNE--PNDCTYNTLIRAHLRDG 534
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R + KEM +G LVT ++ L+ L + G N+ + M +
Sbjct: 215 LCRDGCIDAAISLFKEMETKGIKSSLVTYNS---LVGGLCKAGKWNDGVQLLKDMTSRKI 271
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P+V +NV+I+ + G +A L ++M G P+ TY L+ YC
Sbjct: 272 IPNVITFNVLIDVFVKEGKLQEANELYKEMITKGI--SPNTITYNSLMDGYC 321
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LIK + V+E + F ++ + + Y++++ C+ G A L ++M
Sbjct: 347 TFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEM 406
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PDV TY IL+ C G
Sbjct: 407 VSLGV--LPDVMTYGILLDGLCDNG 429
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A + ++ + PD +N +IN LC ++A L+ +M G C P+V TY +
Sbjct: 119 AYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENG--CQPNVVTYNSI 176
Query: 248 ISSYCKYG 255
++ CK G
Sbjct: 177 VNGICKSG 184
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+G V+ W+ + +G V T TV +I L ++G ++EA +M++
Sbjct: 460 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV--MISGLCKKGSLSEANILLRKMEEDGNE 517
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
P+ YN +I A R G+ + L+E+M+ GF
Sbjct: 518 PNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGF 551
>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI+ EG V+EAL M +PD++ YN +I +C+ G ++A ++
Sbjct: 223 TVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMI 282
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+EL G C PDV +Y IL+ + G
Sbjct: 283 RNLELKG--CEPDVISYNILLRALLNQG 308
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L EM RG ++ T +T+ I+ + +EG+V+ A ++ C PDV +YN+++
Sbjct: 246 LLDEMLSRGLKPDMFTYNTI---IRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLR 302
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
AL G + + L+ +M +C P+V TY+ILI++ C+ G
Sbjct: 303 ALLNQGKWEEGEKLMTKM--FSEKCDPNVVTYSILITTLCRDG 343
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L +G + EA+ MK+ PD Y+Y+ +I A CR G + A LE M
Sbjct: 331 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 390
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C PD+ Y ++++ CK G
Sbjct: 391 ISDG--CLPDIVNYNTVLATLCKNG 413
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L++ L +G E +M +C P+V Y+++I LCR G +A LL+ M+ G
Sbjct: 300 LLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKG 359
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD Y+Y LI+++C+ G
Sbjct: 360 L--TPDAYSYDPLIAAFCREG 378
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 8/112 (7%)
Query: 145 GNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
GN ++ L L+ M R+G N +++ T LIK V +A+ +++F +PD
Sbjct: 99 GNYIESLH-LLETMVRKGYNPDVIL---CTKLIKGFFTLRNVPKAVRVMEILEKFG-QPD 153
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
V+AYN +IN C++ + A +L++M F PD TY I+I S C G
Sbjct: 154 VFAYNALINGFCKMNRIDDATRVLDRMRSKDF--SPDTVTYNIMIGSLCSRG 203
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T +I L G ++ AL ++ C+P V Y ++I A G ++A LL+
Sbjct: 189 TVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLD 248
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
+M G + PD++TY +I CK GM
Sbjct: 249 EMLSRGLK--PDMFTYNTIIRGMCKEGM 274
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNG----ELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196
+++ G+ ++ L L+ +S NG E+ S ++CL + EG+V++A M+
Sbjct: 444 LWSSGDKIRALHMILEMVS---NGIDPDEITYNSMISCLCR----EGMVDKAFELLVDMR 496
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
P V YN+V+ C+ A +L+ M G C P+ TYT+LI
Sbjct: 497 SCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSM--VGNGCRPNETTYTVLI 546
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F R + +FL+ M G ++V +TV + L + G ++AL F ++ +
Sbjct: 373 AFCREGRLDVAIEFLETMISDGCLPDIVNYNTV---LATLCKNGKADQALEIFGKLGEVG 429
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
C P+ +YN + +AL G+ +A ++ +M G PD TY +IS C+ GM
Sbjct: 430 CSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGI--DPDEITYNSMISCLCREGM 484
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A RM+ PD YN++I +LC G + A +L+Q L C P V TY
Sbjct: 170 IDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQ--LLSDNCQPTVITY 227
Query: 245 TILISS 250
TILI +
Sbjct: 228 TILIEA 233
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
+S+ + L G AL M PD YN +I+ LCR G +KA LL
Sbjct: 434 SSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLV 493
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
M F P V TY I++ +CK
Sbjct: 494 DMRSCEFH--PSVVTYNIVLLGFCK 516
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEA 188
N VT + R ++ + LK M +G +T + LI EG ++ A
Sbjct: 328 NVVTYSILITTLCRDGKIEEAMNLLKLMKEKG----LTPDAYSYDPLIAAFCREGRLDVA 383
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+ M C PD+ YN V+ LC+ G ++A + ++ G C P+ +Y +
Sbjct: 384 IEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG--CSPNSSSYNTMF 441
Query: 249 SSYCKYG 255
S+ G
Sbjct: 442 SALWSSG 448
>gi|357500143|ref|XP_003620360.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495375|gb|AES76578.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 426
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+WD + EM R G T + L+ VL + G + A+ F ++K P++ YN++
Sbjct: 295 VWDLIDEM--RATGRSANVITYSSLLNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYNIL 352
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
++ LC+ G A+ + + + G+R DV YT++I+ C+ +
Sbjct: 353 VDGLCKNGRLKDAQEIFHDLLIKGYRL--DVRLYTVMINGLCREAL 396
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 10/152 (6%)
Query: 105 PQKVTLG-INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN 163
P VTL + K + V++ HF H++V K R +NV + + + G
Sbjct: 43 PDTVTLTTLLKGLCINNEVKKALHF-HDDVIAKGF-----RLDNV-SYGTLINGLCKSGE 95
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
+ + +I L ++ LV +A + M R PDV YN +I C VG A
Sbjct: 96 TKAPDQFMYSMIINRLCKDKLVVDAYDLYCEMVVKRIFPDVVTYNTLIYGFCIVGQLEDA 155
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L +M L P+V ++ ILI CK G
Sbjct: 156 IRLFNEMRLKNI--VPNVCSFNILIDGLCKEG 185
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T + LI LG+ G ++ M+ +V Y+ ++N LC+ G+F+ A +
Sbjct: 276 TITYSTLIDGLGKLGRISYVWDLIDEMRATGRSANVITYSSLLNVLCKSGHFDTAIRIFT 335
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+++ GF P++ TY IL+ CK G
Sbjct: 336 KIKDKGFE--PNMVTYNILVDGLCKNG 360
>gi|326513918|dbj|BAJ92109.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 459
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
LW +M R G ++ +T + +I G L +A+ F R+ F C YN +
Sbjct: 131 LWTQASDM--RALGLPLSPATFSAVISSYGHSRLAEQAVEVFNRLPHFGCPQTTEVYNAL 188
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ALC GNF A LL +M G PD T++ L+ ++C G
Sbjct: 189 LDALCANGNFAGAYKLLRRMARKG--VAPDRATFSTLVDAWCASG 231
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL +M+ RG V + L+ L G + EA A R+ + PDV +N + A
Sbjct: 239 FLDDMATRGFRPPVRGRDL--LVDGLVRAGRLEEAKAFALRITKEGVLPDVATFNSLAQA 296
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC G+ A LL G C PD+ TY +++ + K G
Sbjct: 297 LCDAGDVEFAVGLLADASSRGM-C-PDISTYKVMLPAVAKAG 336
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+ C + FA G L + S RG ++T V ++ + + G + EA
Sbjct: 295 QALCDAGDVEFAVG--------LLADASSRGMCPDISTYKV--MLPAVAKAGRIEEAFRL 344
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
FY + RP Y ++ ALC+ G F A M+ G PP+ Y +L+
Sbjct: 345 FYAAIEDGHRPFPSLYAAIVKALCKAGRFADAFAFFGDMKSKGH--PPNRPVYVMLVKMC 402
Query: 252 CKYG 255
+ G
Sbjct: 403 VRGG 406
>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62914, mitochondrial; Flags: Precursor
gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats. EST gb|AA728420 comes from this gene
[Arabidopsis thaliana]
gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 528
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F GN + + +M G T T T LI L +EA+A RM Q C+
Sbjct: 158 FCHGNRISDAVALVDQMVEMGYKP--DTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQ 215
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
PD+ Y V+N LC+ G+ + A LL +ME + +V Y+ +I S CKY
Sbjct: 216 PDLVTYGAVVNGLCKRGDTDLALNLLNKMEAA--KIEANVVIYSTVIDSLCKY 266
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + V + +EMS+RG LV T T T LI + + A F +M
Sbjct: 403 FCKAKRVDKGMELFREMSQRG---LVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGV 459
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++ YN++++ LC+ G KA + E ++ PD+YTY I+I CK G
Sbjct: 460 HPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTME--PDIYTYNIMIEGMCKAG 512
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ M +RG +LVT V + L + G + AL +M+ + +V Y+ VI+
Sbjct: 205 LIDRMVQRGCQPDLVTYGAV---VNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVID 261
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+LC+ + + A L +ME G R P+V TY+ LIS C YG
Sbjct: 262 SLCKYRHEDDALNLFTEMENKGVR--PNVITYSSLISCLCNYG 302
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 150 GLWD----FLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G W L +M R+ N LVT S LI ++G + +A + M + P++
Sbjct: 302 GRWSDASRLLSDMIERKINPNLVTFSA---LIDAFVKKGKLVKAEKLYEEMIKRSIDPNI 358
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ Y+ +IN C + +A+ +LE M C P+V TY LI+ +CK
Sbjct: 359 FTYSSLINGFCMLDRLGEAKQMLELMIRKD--CLPNVVTYNTLINGFCK 405
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
++AL F M+ RP+V Y+ +I+ LC G ++ A LL M + P++ T++
Sbjct: 270 DDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDM--IERKINPNLVTFS 327
Query: 246 ILISSYCKYG 255
LI ++ K G
Sbjct: 328 ALIDAFVKKG 337
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+ F M Q R P + ++ +++A+ ++ F+ E+ME+ G ++YTY
Sbjct: 59 LDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGI--SHNLYTY 116
Query: 245 TILISSYCK 253
ILI+ +C+
Sbjct: 117 NILINCFCR 125
>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
Length = 799
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + + +V + L EM +G + T LI L + G + +A+
Sbjct: 459 NVVTYTALSDGLCKQGDVCAANELLHEMCSKGLE--LNIFTYNSLINGLCKAGNLEQAMR 516
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
T M + +PDVY Y +I ALC+ ++A LL++M G + P + TY +L++
Sbjct: 517 TMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIK--PTIVTYNVLMNG 574
Query: 251 YCKYG 255
+C G
Sbjct: 575 FCMSG 579
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G ++ + T ++ +G + A F M++ D Y +IN LCR G +
Sbjct: 349 HGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKE 408
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
A +L++ME G D TYT+LI YCK G T
Sbjct: 409 AERVLQEMEDKGLDV--DAVTYTVLIDGYCKVGKMT 442
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R +K L+EM +G V T T LI + G + EA +M Q R
Sbjct: 400 LCRAGELKEAERVLQEMEDKGLD--VDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVT 457
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V Y + + LC+ G+ A LL +M G +++TY LI+ CK G
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLEL--NIFTYNSLINGLCKAG 509
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R ++ ++ EM +RG T T LI L G + EA M+
Sbjct: 365 FCRKGDLAAARNWFDEMQKRGLA--ADGVTYTALINGLCRAGELKEAERVLQEMEDKGLD 422
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D Y V+I+ C+VG +A FL+ ++ R P+V TYT L CK G
Sbjct: 423 VDAVTYTVLIDGYCKVGKMTEA-FLVHN-KMVQKRVTPNVVTYTALSDGLCKQG 474
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM+ RG + T +I +L +EG V++A+ M D + V++
Sbjct: 307 LLSEMAARGLE--LNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSG 364
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CR G+ AR ++M+ G D TYT LI+ C+ G
Sbjct: 365 FCRKGDLAAARNWFDEMQKRGL--AADGVTYTALINGLCRAG 404
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+ F + + + +YN+++ ALC G A L ++M PPDV TY
Sbjct: 238 LDEAVQLFQELPE----KNTCSYNILLKALCTAGRIKDAHQLFDEMA-----SPPDVVTY 288
Query: 245 TILISSYC 252
I++ YC
Sbjct: 289 GIMVHGYC 296
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I L + ++ A + M +P + YNV++N C G + LLE M
Sbjct: 532 TYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWM 591
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
P+ TY L+ YC
Sbjct: 592 LEKNIH--PNTTTYNSLMKQYC 611
>gi|297797201|ref|XP_002866485.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312320|gb|EFH42744.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 983
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D ++E+ R T + + +I LG++G V EA TF +M + +PD AY ++IN
Sbjct: 572 DVMEELGLRP-----TVAIYSSIIGSLGKQGRVVEAEETFAKMLESGIQPDEIAYMIMIN 626
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
A R G ++A L+E++ R P +TYT+LIS + K GM
Sbjct: 627 AYARNGRIDEANELVEEVVKHFVR--PSSFTYTVLISGFVKMGM 668
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G V TCL++ ++ + A+ + RM + C D +N +I+ ++G +K
Sbjct: 267 DGYFVDKVMYTCLMREYCKDNNMTMAMRLYLRMVERSCELDPCIFNTLIHGFMKLGMLDK 326
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R + QM G + +V+TY ++I SYCK G
Sbjct: 327 GRVMFSQMIKRGVQ--SNVFTYHVMIGSYCKEG 357
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK L +E ++ + + +++ PDV Y +V+N LC+ + + A +++ ME G
Sbjct: 519 VIKCLFQENIIEDLGSLVNLIQELDFVPDVDTYLIVVNELCKNNDRDAAFSVIDVMEELG 578
Query: 235 FRCPPDVYTYTILISSYCKYG 255
R P V Y+ +I S K G
Sbjct: 579 LR--PTVAIYSSIIGSLGKQG 597
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++Y +N ++ C G ++A LE M+ G P+ TYTIL+ S+ + G
Sbjct: 793 PNLYLHNTIVTGYCAAGRLDEAYNHLESMQKEGI--VPNQVTYTILMKSHIEAG 844
>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 789
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
++VT + + ++ + FLKE +G + + ++ ++G ++EA +
Sbjct: 371 DQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFH--IDKVGYSAIVHSFCQKGRMDEAKS 428
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M C PDV Y +++ CR+G ++A+ +L+QM G C P+ +YT L++
Sbjct: 429 LVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHG--CKPNTVSYTALLNG 486
Query: 251 YCKYG 255
C G
Sbjct: 487 LCHSG 491
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F++W +R + + H+ + + V ++ +G L+ M+RRG ++ C
Sbjct: 179 ALNFFYWADRQWRYSHHPLVYYTLLDVLSKTKLCQGARRVLRLMTRRGIE--LSPEAFGC 236
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ G + AL M++ P++ N I L + KA LE+M++ G
Sbjct: 237 VMVSYSRAGKLRNALRVLTLMQKAGVEPNLSICNTTIYVLVKGCKLEKALRFLERMQVTG 296
Query: 235 FRCPPDVYTYTILISSYC 252
+ PD+ TY LI YC
Sbjct: 297 IK--PDIVTYNSLIKGYC 312
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R + D +EM +G T + LI+ L + V EA C
Sbjct: 522 FRREGKLSEACDLTREMVEKGF--FPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCA 579
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+V + VI+ C++G+ A +LE M L PD TYT L + K G
Sbjct: 580 INVVNFTTVIHGFCQIGDMEAALSVLEDMYLSNKH--PDAVTYTALFDALGKKG 631
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 149 KGLWDFLKEM-----SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
KG D K + SR N ++VT T ++ G ++EA +M + C+P+
Sbjct: 420 KGRMDEAKSLVIDMYSRSCNPDVVT---YTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPN 476
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+Y ++N LC G +AR ++ E + P+ TY +++ + + G
Sbjct: 477 TVSYTALLNGLCHSGKSLEAREMINVSEEHWW--TPNAITYGVVMHGFRREG 526
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N C V +G ++ FL+ M G ++VT ++ LIK + + +AL
Sbjct: 265 NLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKPDIVTYNS---LIKGYCDLNRIEDAL 321
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
+ C PD +Y V+ LC+ + + L+E+M + PD TY LI
Sbjct: 322 ELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEQVKCLMEKM-VQDSNLIPDQVTYNTLIH 380
Query: 250 SYCKYG 255
K+G
Sbjct: 381 MLSKHG 386
>gi|255593593|ref|XP_002535906.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223521567|gb|EEF26476.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 183
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
MK F C PD +YN +++ LC+ G N+AR LL M+ G PD T+ IL+S YCK
Sbjct: 1 MKDFSCFPDNASYNTILDVLCKKGKLNEARDLLLDMKNNGLF--PDRNTFNILVSGYCKL 58
Query: 255 G 255
G
Sbjct: 59 G 59
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+V CK+ + AR D L +M + NG +T L+ + G + EA
Sbjct: 18 DVLCKKGKLNEAR--------DLLLDM--KNNGLFPDRNTFNILVSGYCKLGWLKEAAQV 67
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
M + PDV+ YN++I LC+ G + A L ++ME + PDV TYT LI+
Sbjct: 68 IDVMARNNILPDVWTYNMLIGGLCKDGKIDGAFRLRDEME--NLKLLPDVVTYTTLINGC 125
Query: 252 CKY 254
+Y
Sbjct: 126 FEY 128
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
++ ++ VL ++G +NEA MK PD +N++++ C++G +A +++
Sbjct: 10 NASYNTILDVLCKKGKLNEARDLLLDMKNNGLFPDRNTFNILVSGYCKLGWLKEAAQVID 69
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
M PDV+TY +LI CK G
Sbjct: 70 VMARNNIL--PDVWTYNMLIGGLCKDG 94
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L ++G ++ A M+ + PDV Y +IN + K L+++M
Sbjct: 82 TYNMLIGGLCKDGKIDGAFRLRDEMENLKLLPDVVTYTTLINGCFEYSSSLKGFELIDEM 141
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G + P+ TY +++ Y K G
Sbjct: 142 EGKGVK--PNAVTYNVVVKWYVKEG 164
>gi|115453133|ref|NP_001050167.1| Os03g0363700 [Oryza sativa Japonica Group]
gi|108708311|gb|ABF96106.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113548638|dbj|BAF12081.1| Os03g0363700 [Oryza sativa Japonica Group]
Length = 564
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 157 EMSRRGNGELV----TTSTVTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
EM+R+ E++ STV+C I V G G V+EAL F M + DV YN++
Sbjct: 342 EMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNIL 401
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I LC+ G ++A + EQ+ G P V T+T LI + C+ G
Sbjct: 402 IQGLCKAGRLSEAIQVYEQLLSSGLE--PSVSTFTPLIDTMCEEG 444
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+EAL F +K D Y I+ LC++G ++AR + +M G P+ Y Y
Sbjct: 272 SEALRVFNEIKLRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGME--PNEYAYC 329
Query: 246 ILISSYCKYG 255
L++ YCK G
Sbjct: 330 SLVAYYCKAG 339
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
V T T I L + G ++EA + M P+ YAY ++ C+ G+F AR +
Sbjct: 288 VDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMARKV 347
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
++M G + + IL++ +C +G
Sbjct: 348 YDEMLGKGLK--ESTVSCNILVTGFCTHG 374
>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
Length = 382
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 8/137 (5%)
Query: 118 FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLI 176
F ++R FH N VT + + + + L M G +LV T L+
Sbjct: 175 FNEMIDRDFH--PNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVA---YTPLV 229
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
G ++ AL RM C PDV Y VVI+ LC+VG + A + EL +
Sbjct: 230 LGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFR--ELVANK 287
Query: 237 CPPDVYTYTILISSYCK 253
C P+V TY+ LI YC+
Sbjct: 288 CSPNVVTYSALIGGYCR 304
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R + + EM R + LVT S V I L + ++EA RM C
Sbjct: 162 LCRARRLADALEVFNEMIDRDFHPNLVTYSVV---IDGLCKSDQLDEAQQLLDRMVSEGC 218
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RPD+ AY ++ G + A LL +M G C PDV TYT++I CK G
Sbjct: 219 RPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQG--CIPDVVTYTVVIDKLCKVG 271
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T + +++ L G V +AL F ++ +PDV +Y +IN LC++G + A L +
Sbjct: 12 TTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRK 71
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
M G C P+ +TY L+ CK
Sbjct: 72 MVAAG-GCRPNAFTYNALVDGLCK 94
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT +T L+ L + G V+EALATF +M + P + ++N +I LCR A
Sbjct: 116 DVVTYNT---LMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADAL 172
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ +M F P++ TY+++I CK
Sbjct: 173 EVFNEMIDRDFH--PNLVTYSVVIDGLCK 199
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 173 TCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
T LI L + G V+ A F +M CRP+ + YN +++ LC+ + AR ++ +
Sbjct: 50 TTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEAR 109
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
F PDV TY L+++ + G
Sbjct: 110 KRDF--APDVVTYNTLMAALFQLG 131
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F+ + L+ M +G V T TV +I L + G V++A F + +C
Sbjct: 232 FSAAGRLDSALGLLRRMVSQGCIPDVVTYTV--VIDKLCKVGRVDDAHEIFRELVANKCS 289
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
P+V Y+ +I CR ++ ++ +M C P+V TY +I
Sbjct: 290 PNVVTYSALIGGYCRASRVDEGGKVMREMA-----CRPNVVTYNTMI 331
>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
Length = 799
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + + +V + L EM +G + T LI L + G + +A+
Sbjct: 459 NVVTYTALSDGLCKQGDVCAANELLHEMCSKGLE--LNIFTYNSLINGLCKAGNLEQAMR 516
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
T M + +PDVY Y +I ALC+ ++A LL++M G + P + TY +L++
Sbjct: 517 TMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIK--PTIVTYNVLMNG 574
Query: 251 YCKYG 255
+C G
Sbjct: 575 FCMSG 579
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G ++ + T ++ +G + A F M++ D Y +IN LCR G +
Sbjct: 349 HGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKE 408
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
A +L++ME G D TYT+LI YCK G T
Sbjct: 409 AERVLQEMEDKGLDV--DAVTYTVLIDGYCKVGKMT 442
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R +K L+EM +G V T T LI + G + EA +M Q R
Sbjct: 400 LCRAGELKEAERVLQEMEDKGLD--VDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVT 457
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V Y + + LC+ G+ A LL +M G +++TY LI+ CK G
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLEL--NIFTYNSLINGLCKAG 509
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F R ++ ++ EM +RG T T LI L G + EA M+
Sbjct: 365 FCRKGDLAAARNWFDEMQKRGLA--ADGVTYTALINGLCRAGELKEAERVLQEMEDKGLD 422
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D Y V+I+ C+VG +A FL+ ++ R P+V TYT L CK G
Sbjct: 423 VDAVTYTVLIDGYCKVGKMTEA-FLVHN-KMVQKRVTPNVVTYTALSDGLCKQG 474
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM+ RG + T +I +L +EG V++A+ M D + V++
Sbjct: 307 LLSEMAARGLE--LNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSG 364
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CR G+ AR ++M+ G D TYT LI+ C+ G
Sbjct: 365 FCRKGDLAAARNWFDEMQKRGL--AADGVTYTALINGLCRAG 404
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+ F + + + +YN+++ ALC G A L ++M PPDV TY
Sbjct: 238 LDEAVQLFQELPE----KNTCSYNILLKALCTAGRIKDAHQLFDEMA-----SPPDVVTY 288
Query: 245 TILISSYC 252
I++ YC
Sbjct: 289 GIMVHGYC 296
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I L + ++ A + M +P + YNV++N C G + LLE M
Sbjct: 532 TYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWM 591
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
P+ TY L+ YC
Sbjct: 592 LEKNIH--PNTTTYNSLMKQYC 611
>gi|212275500|ref|NP_001130935.1| uncharacterized protein LOC100192040 [Zea mays]
gi|194690482|gb|ACF79325.1| unknown [Zea mays]
Length = 380
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 94/238 (39%), Gaps = 40/238 (16%)
Query: 45 IESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLKQRILK------------KEADNIAN 92
+E + ++L++ R + ++ R RTP + L KEA+ +
Sbjct: 11 VEDLLEILRAYTEKHLTHMRKLAKKRRVRMRTPPETDALNVLLDAFCKCGMVKEAEAVFG 70
Query: 93 NV-------------LVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMG 139
V L G R+P+K + + + H E F + C G
Sbjct: 71 RVKRKLLGNAETYSTLFFGWCRARDPKKAMKVLEEMIQMKHTPESFTYVAAIISFCSA-G 129
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELV---TTSTVTCLIKVLGEEGLVNEALATFYRMK 196
+V + + L++F+ R G + T T + +I L + + E M+
Sbjct: 130 LV----SEARELFEFM-----RTEGLTISSPTAKTYSIMIVALAKADRMEECFELLSDMR 180
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
C PDV Y +I +C VG + A +L++M GF PPD+ TY ++ +C +
Sbjct: 181 SCGCMPDVTTYKDLIEGMCLVGKLDAAYRVLDEMGRAGF--PPDIVTYNCFLNVFCSH 236
>gi|156083863|ref|XP_001609415.1| pentatricopeptide repeat domain containing protein [Babesia bovis
T2Bo]
gi|154796666|gb|EDO05847.1| pentatricopeptide repeat domain containing protein [Babesia bovis]
Length = 1067
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEA 188
NEVT M + N ++ D L+EM ++GN V +T+ T LIK G+ + A
Sbjct: 731 NEVTYGIMLDAYVNNNRMEEAMDLLQEMKQKGN---VKPNTIMYTTLIKGFGQNRQLQRA 787
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
++ + M + YN +I+A RVG+ A LLE+M + + PD+ T++ +I
Sbjct: 788 MSIYDMMVSEGVMRNTVTYNSIIDACARVGDMKAAAALLEEMMMN--QVEPDLITFSTII 845
Query: 249 SSYC 252
YC
Sbjct: 846 KGYC 849
>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 556
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E TCK G K L EM +G + T V ++ + +EG V++A+
Sbjct: 195 EATCKRSGY--------KQAVKLLDEMRDKGCAPDIVTYNV--VVNGICQEGRVDDAMEF 244
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+ + C P+ +YN+V+ LC + A L+ +M G PP+V T+ +LIS
Sbjct: 245 LKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGR--PPNVVTFNMLISFL 302
Query: 252 CKYGM 256
C+ G+
Sbjct: 303 CRRGL 307
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+ EMSR+G V T + LI L GLV A+ ++ ++ C P+ +YN +++A
Sbjct: 279 LMAEMSRKGRPPNVVTFNM--LISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHA 336
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ ++A +E M G C PD+ +Y L+++ C+ G
Sbjct: 337 FCKQKKMDRAMAFVELMVSSG--CYPDIVSYNTLLTALCRGG 376
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI+ L G + ALA M + C PDV Y +++ A C+ + +A LL+
Sbjct: 152 TYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLD 211
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M G C PD+ TY ++++ C+ G
Sbjct: 212 EMRDKG--CAPDIVTYNVVVNGICQEG 236
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L +M RRG V T T+ L++ + +A+ M+ C PD+ YNVV+N
Sbjct: 174 VLDDMLRRGCVPDVVTYTI--LLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNG 231
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+C+ G + A L+ LP + C P+ +Y I++ C
Sbjct: 232 ICQEGRVDDAMEFLKS--LPSYGCEPNTVSYNIVLKGLC 268
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L G V+ A+ +++K C P + +YN VI+ L + G +A LL +M G
Sbjct: 368 LLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKG 427
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ PD+ TY+ + S C+ G
Sbjct: 428 LQ--PDIITYSTISSGLCREG 446
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y YN +I LC G + A +L+ M G C PDV TYTIL+ + CK
Sbjct: 150 PDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRG--CVPDVVTYTILLEATCK 199
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 48/116 (41%), Gaps = 23/116 (19%)
Query: 153 DFLKEMSRRGNGE-----------LVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFR 199
D L+ + RRG+ E L ++ C LIK L G EA R
Sbjct: 61 DRLRVLVRRGDLEEAIRLVESMAGLEPSAAGPCAALIKKLCASGRTAEA-----RRVLAS 115
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C PDV +YN ++ C G + AR L+ M + PD YTY LI C G
Sbjct: 116 CEPDVMSYNAMVAGYCVTGQLDNARRLVAAMPM-----EPDTYTYNTLIRGLCGRG 166
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++ A+A M C PD+ +YN ++ ALCR G + A LL Q++ G C P + +Y
Sbjct: 343 MDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKG--CTPVLISY 400
Query: 245 TILISSYCKYG 255
+I K G
Sbjct: 401 NTVIDGLTKAG 411
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + + L EM +G +++T ST++ L EG + EA+ F +++
Sbjct: 407 LTKAGKTEEALELLNEMVTKGLQPDIITYSTIS---SGLCREGRIEEAIKAFCKVQDMGI 463
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
RP+ YN ++ LC+ + A L M G C P+ TYTILI G+
Sbjct: 464 RPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNG--CMPNESTYTILIEGLAYEGL 517
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
RG V + L ++ +G L++ +TV I L + G EAL M
Sbjct: 371 ALCRGGEVDAAVELLHQLKDKGCTPVLISYNTV---IDGLTKAGKTEEALELLNEMVTKG 427
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+PD+ Y+ + + LCR G +A +++ G R P+ Y ++ CK
Sbjct: 428 LQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIR--PNTVLYNAILLGLCK 479
>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 418
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + T T LI + G V+ A+ + +M PD+ YN +I LC+ G+ +
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A+ L+++M + G + PD TYT LI CK G
Sbjct: 295 AQDLIDEMSMKGLK--PDKITYTTLIDGSCKEG 325
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+EG + A + F + ++ RP V ++N ++N ++G+ N+ L M+ G + PD
Sbjct: 148 KEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQ--PD 205
Query: 241 VYTYTILISSYCK 253
VYTY++LI+ CK
Sbjct: 206 VYTYSVLINGLCK 218
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +NE M+ +PDVY Y+V+IN LC+ + A L ++M G P+
Sbjct: 185 GDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGL--VPNGV 242
Query: 243 TYTILISSYCKYG 255
T+T LI +CK G
Sbjct: 243 TFTTLIDGHCKNG 255
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++K D + EMS +G T T LI +EG + A M + R
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKP--DKITYTTLIDGSCKEGDLETAFEYRKIMIKENIR 343
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D AY +I+ LC+ G A +L +M G + ++ TYT++I+ +CK G
Sbjct: 344 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKL--EIGTYTMIINEFCKKG 395
>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
EM RG L T T LI ++G + +AL+ F M Q +PD+ AYN +I+
Sbjct: 350 LFDEMVERG--ALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDG 407
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+VG KA L + M + P+ TY ILI++YC G
Sbjct: 408 FCKVGEMEKASELWDGM--ISRKIFPNHITYGILINAYCSVG 447
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL EM GNG T LI EGL+ EA M +P ++ YN +IN
Sbjct: 140 FLSEME--GNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIING 197
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC+ G + +A+ +L +M G PD TY L+ C+
Sbjct: 198 LCKKGRYARAKGILIEMLNIGL--SPDTTTYNTLLVESCR 235
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFR 199
VF+R ++ + ++M + G LV + + T L+ G + EAL M +
Sbjct: 267 VFSRNRHLDQALVYFRDMKKFG---LVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQG 323
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
C DV AYN ++N LC+ A L ++M G PD YT+T LI +C+ G T
Sbjct: 324 CVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERG--ALPDFYTFTTLIHGHCQDGNMT 380
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G LV+ + L+ L + V A + + +VY N+++NALC+ G F
Sbjct: 75 RSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKF 134
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ + L +ME G D+ TY LI +YC+ G+
Sbjct: 135 DDVKSFLSEMEGNGIY--ADMVTYNTLIGAYCREGL 168
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
LWD + E + LVT +TV IK G ++A RM PD +YN +
Sbjct: 455 LWDVMIEKGIKPT--LVTCNTV---IKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTL 509
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
IN R N +KA + +ME G PD+ TY ++++ +C+ G
Sbjct: 510 INGFVREDNMDKAFLWINKMEKEGL--LPDIITYNVVMNGFCRQG 552
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 144 RGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
R +N + EM R+G +LV+ S+ LI V +++AL F MK+F P
Sbjct: 235 RRDNFSEAKEIFGEMLRQGVVPDLVSFSS---LIAVFSRNRHLDQALVYFRDMKKFGLVP 291
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
D Y V+++ CR GN +A + ++M G C DV Y +++ CK M T
Sbjct: 292 DNVIYTVLMHGYCRNGNMLEALKIRDEMLEQG--CVLDVIAYNTILNGLCKEKMLT 345
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALAT 191
VTC + + R + +FL M +G + ++ +T LI E +++A
Sbjct: 469 VTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNT---LINGFVREDNMDKAFLW 525
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+M++ PD+ YNVV+N CR G +A +L +M G PD TYT LI+ +
Sbjct: 526 INKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGIN--PDRSTYTALINGH 583
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W+ +E+ R +G + T+ ++ L ++G ++ + M+ D+ YN +I
Sbjct: 103 WEVHREVVR--SGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLI 160
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A CR G +A ++ M G + P ++TY +I+ CK G
Sbjct: 161 GAYCREGLLEEAFEIMNSMADKGLK--PSLFTYNAIINGLCKKG 202
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L +E ++ +A F M + PD Y + +I+ C+ GN KA L M +
Sbjct: 338 LCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIK-- 395
Query: 239 PDVYTYTILISSYCKYG 255
PD+ Y LI +CK G
Sbjct: 396 PDIVAYNTLIDGFCKVG 412
>gi|326487476|dbj|BAJ89722.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 805
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + +I G +GLV+EA+A F +K P V YN ++ + GN+ +A +L +M
Sbjct: 256 TASTVIAAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLREM 315
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G C PD TY L SY + G
Sbjct: 316 EDAG--CKPDAVTYNELAGSYARAG 338
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 140 IVFARGNNVKGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
++ A G + GL D F +++ RG+ V T L++V G+ G EAL M
Sbjct: 260 VIAAAGRD--GLVDEAVAFFEDLKARGHAPCVVT--YNALLQVFGKAGNYTEALRVLREM 315
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ C+PD YN + + R G + +A ++ M G P+ +TY ++++Y G
Sbjct: 316 EDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGLL--PNTFTYNTIMTAYGNAG 373
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+ VT E+ +AR + + M G G L T T ++ G G V+EALA
Sbjct: 323 DAVTYNELAGSYARAGFYQEAAKCIDTMI--GKGLLPNTFTYNTIMTAYGNAGKVDEALA 380
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F RMK+ P YN+V+ L + F +L +M G C P+ T+ L++
Sbjct: 381 LFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSG--CTPNRVTWNTLLAV 438
Query: 251 YCKYGMQT 258
K GM++
Sbjct: 439 CGKRGMES 446
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+PDV +YN VIN C+ G +A+ +L +M G P V TY L+ Y M
Sbjct: 680 KPDVVSYNTVINGFCKEGLIKEAQRVLSEMIADGV--APCVITYHTLVGGYASREM 733
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T LI G G A + M P + YN ++N L R G++ AR ++ +
Sbjct: 465 DTYNTLICAYGRCGSRANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSK 524
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M+ GF+ P+ +Y++L+ + K G
Sbjct: 525 MKSEGFK--PNDMSYSLLLQCHAKGG 548
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLV 185
+ F + V + + I + ++G+ +E+ RG+ +LV ++ ++ + + GL
Sbjct: 564 NIFPSWVILRTLVIANFKCRRLEGIERAFQEVKARGHKPDLVILNS---MLSIYAKNGLY 620
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGN-------FNKARFLLEQMELPGFRCP 238
++A+ F ++Q PD+ YN +++ + N+ R Q + +
Sbjct: 621 SKAMEMFESIEQLGLSPDLITYNSLMDMYAKSNEPWEAEKILNRLRSSQSQQQQQQQQLK 680
Query: 239 PDVYTYTILISSYCKYGM 256
PDV +Y +I+ +CK G+
Sbjct: 681 PDVVSYNTVINGFCKEGL 698
>gi|242062226|ref|XP_002452402.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
gi|241932233|gb|EES05378.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
Length = 506
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 42/176 (23%)
Query: 114 KATEFYHWVE-RFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT---- 168
A F+ W + R + H C M + + + +WD L EM RG LVT
Sbjct: 103 SALGFFLWAQSRGGGYSHTPCACNRMVDLLGKMRQIDRMWDLLSEMHCRG---LVTVDTI 159
Query: 169 -------------------------------TSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
T T+ L+ L +E V A F M
Sbjct: 160 AKSIRRLAAARRWRDAILLFDQLEDLGLERNTETMNVLLDALCKERKVELAREVFV-MLS 218
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD Y +N+ ++ C V ++A + +E+M+ GF PP V TYT ++ +YCK
Sbjct: 219 PHIAPDAYTFNIFVHGWCSVRRIDEAMWTIEEMKNRGF--PPIVITYTAVLEAYCK 272
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + N + +++ L MS +G V T T+ ++ L + EAL+ RMK C
Sbjct: 269 AYCKQRNFRRVYEILDSMSSQGCHPNVITYTM--IMTSLTKCERFEEALSVSDRMKSSGC 326
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD YN +IN L R G+ +A + ++E+P P +V TY +IS C+YG
Sbjct: 327 KPDTLFYNALINLLGRAGHLFEANQVF-RVEMPRNVVPRNVATYNTMISILCQYG 380
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+ T MK P V Y V+ A C+ NF + +L+ M G C P+V TY
Sbjct: 241 IDEAMWTIEEMKNRGFPPIVITYTAVLEAYCKQRNFRRVYEILDSMSSQG--CHPNVITY 298
Query: 245 TILISSYCK 253
T++++S K
Sbjct: 299 TMIMTSLTK 307
>gi|357506669|ref|XP_003623623.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498638|gb|AES79841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 583
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
CL++ L G V+EA+ MK DVY+Y+ V+N LC+VG ++A L ++
Sbjct: 221 CLLRGLAYVGRVDEAVEILMDMKTGNIGVDVYSYSAVMNGLCKVGRSDEAMELFDEAVGV 280
Query: 234 GFRCPPDVYTYTILISSYCKYGMQ 257
G R PDV T+ LI Y + G +
Sbjct: 281 GLR--PDVVTFNALIEGYSREGRE 302
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG ++T+T LI L + G V +A+ F +++ + V AYN ++ L VG ++
Sbjct: 175 NGFEPDSATITVLINSLCKRGKVKKAMEVFEFLERKGLKLGVQAYNCLLRGLAYVGRVDE 234
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A +L M++ DVY+Y+ +++ CK G
Sbjct: 235 AVEIL--MDMKTGNIGVDVYSYSAVMNGLCKVG 265
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F ++ F PD Y+++I C +A+ +L + GF PD T T+LI+S
Sbjct: 134 FTKLSSFHLVPDSCTYSIMIRCHCSKNELEEAKRVLFTVLENGFE--PDSATITVLINSL 191
Query: 252 CKYG 255
CK G
Sbjct: 192 CKRG 195
>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
Length = 472
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G+G T IK G++++A+ F M+ +PDV Y VI ALCR+G +
Sbjct: 353 GDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD 412
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
A QM G PD Y Y LI +C +G+
Sbjct: 413 DAMEKFNQMIDQGV--APDKYAYNCLIQGFCTHGI 445
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 175 LIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L+K E +EAL +R + C PDV++YN+++ +LC G +A LL M
Sbjct: 118 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEG 177
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G C PDV Y +I + K G
Sbjct: 178 GTVCSPDVVAYNTVIDGFFKEG 199
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFR--CRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
L+K L +G +A M + C PDV AYN VI+ + G+ NKA L ++M
Sbjct: 154 LLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 213
Query: 233 PGFRCPPDVYTYTILISSYCK 253
G PPD+ TY ++ + CK
Sbjct: 214 RGI--PPDLVTYNSVVHALCK 232
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G EA+ F M++ PDV ++++ +LC+ G +AR + + M + G
Sbjct: 261 LIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 320
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PDV++Y I+++ Y G
Sbjct: 321 QN--PDVFSYNIMLNGYATKG 339
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+EG VN+A F M Q PD+ YN V++ALC+ +KA L QM R P+
Sbjct: 197 KEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMV--NKRVLPN 254
Query: 241 VYTYTILISSYCKYG 255
+TY LI Y G
Sbjct: 255 NWTYNNLIYGYSSTG 269
>gi|296084128|emb|CBI24516.3| unnamed protein product [Vitis vinifera]
Length = 970
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
F+ EM G+ + T LI + A+ F RM + C PD Y YN +I+
Sbjct: 136 FVGEMESEGH--FIDKMMYTSLIHGYCRGKKMRTAMRVFLRMLKMGCDPDTYTYNTLIHG 193
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++G F+K L QM G + P+V TY I+I YC+ G
Sbjct: 194 FVKLGLFDKGWILHNQMSEWGLQ--PNVVTYHIMIRRYCEEG 233
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI + GL ++ +M ++ +P+V Y+++I C G + A LL
Sbjct: 184 TYTYNTLIHGFVKLGLFDKGWILHNQMSEWGLQPNVVTYHIMIRRYCEEGKVDCALTLLS 243
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
M F P V++YT+LI++ K
Sbjct: 244 SMS--SFNLTPSVHSYTVLITALYK 266
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
I L G + AL +M CRP + YN +I L + A+ L++ M+ G
Sbjct: 366 ISALCAAGKTDAALLFMDKMVSLGCRPLLSTYNSLIKCLFQERLVEDAKSLIDLMQENGI 425
Query: 236 RCPPDVYTYTILISSYCKYG 255
PD+ TY I++ +C +G
Sbjct: 426 --VPDLATYLIMVHEHCNHG 443
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
F+ +M G L+ ST LIK L +E LV +A + M++ PD+ Y ++++
Sbjct: 381 FMDKMVSLGCRPLL--STYNSLIKCLFQERLVEDAKSLIDLMQENGIVPDLATYLIMVHE 438
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
C G+ A LL+QM G + P V Y +I
Sbjct: 439 HCNHGDLASAFGLLDQMNERGLK--PSVAIYDSIIG 472
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 4/135 (2%)
Query: 123 ERFFHFFHNE-VTCKEMGIVFARGNNVKGLWDFLKEMSR-RGNGELVTTSTVTCLIKVLG 180
E H H V +E + F RG+ K + L M + +G+ + +I
Sbjct: 637 EILLHLLHQSFVIPRENNLSFPRGSPRKIKYFALNLMQKIKGSSFMPNLYLYNGIISGFC 696
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
++ +A F M+ P+ + ++IN R G + A L +M G PD
Sbjct: 697 RANMIQDAYNHFELMQTEGVCPNQVTFTILINGHTRFGEIDHAIGLFNKMNADGL--APD 754
Query: 241 VYTYTILISSYCKYG 255
TY LI CK G
Sbjct: 755 GITYNALIKGLCKAG 769
>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L++ G+ G +EA F M++ C DV AYN ++ ALC+ GN ++A L +M
Sbjct: 194 TYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREM 253
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G PD +Y+I I +YC+
Sbjct: 254 GSNGL--APDACSYSIFIRAYCE 274
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
VN+AL RM++ C PD + YN+V+ L RVG F++ + ME GF P TY
Sbjct: 348 VNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEERGFY--PAASTY 405
Query: 245 TILISSYCK 253
+++ +CK
Sbjct: 406 AVMVHGFCK 414
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+G NV + +EM NG + + I+ E ++ A RM+++
Sbjct: 236 ALCKGGNVDEAYKLFREMG--SNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNL 293
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
P+V+ YN ++ LC+ ++A LL++M G PD+++Y + + +C +
Sbjct: 294 VPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGV--SPDLWSYNAIQAFHCDH 345
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+EM RG V L++ L + G V+EA F M PD +Y++ I A
Sbjct: 214 LFEEMRERGCA--VDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRA 271
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C V + + A +L++M + P+V+TY ++ CK
Sbjct: 272 YCEVNDIHSAFQVLDRMRR--YNLVPNVFTYNCIVKKLCK 309
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T C++K L + V+EA M + PD+++YN + C NKA L+ +M
Sbjct: 299 TYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRM 358
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E C PD +TY +++ + G
Sbjct: 359 EKEN--CMPDRHTYNMVLKMLLRVG 381
>gi|115474031|ref|NP_001060614.1| Os07g0674300 [Oryza sativa Japonica Group]
gi|34393854|dbj|BAC83534.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|34395085|dbj|BAC84771.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113612150|dbj|BAF22528.1| Os07g0674300 [Oryza sativa Japonica Group]
gi|125601488|gb|EAZ41064.1| hypothetical protein OsJ_25552 [Oryza sativa Japonica Group]
Length = 737
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+E L M Q C+PDV N VI+ C+VG +AR +++ M L G C PDV T+T
Sbjct: 364 SEQLDVLVSMLQEGCKPDVITMNTVIHGFCKVGRAQEARRIVDDM-LNGKFCAPDVVTFT 422
Query: 246 ILISSYCKYG 255
LIS Y G
Sbjct: 423 TLISGYLGVG 432
>gi|403223056|dbj|BAM41187.1| pentatricopeptide repeat containing protein [Theileria orientalis
strain Shintoku]
Length = 1735
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEA 188
NE+ M + N V ++M RG V +T+ T LIK G+ +++A
Sbjct: 1349 NEIIYGCMFDAYVNNNRVDSAMRLFEDMKVRGQ---VKPNTIMYTTLIKGYGQNKQLDKA 1405
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+ F M+Q + P+ YN +I+A RVG+ + A LLE M + PD+ T++ +I
Sbjct: 1406 MKIFRMMQQDQVVPNTVTYNSIIDACARVGDMSGATSLLEDMLMNDIE--PDLITFSTII 1463
Query: 249 SSYC 252
YC
Sbjct: 1464 KGYC 1467
>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1084
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
+ V+ + +EM R NG + + T T LI + GL+ +A F M C P+V
Sbjct: 473 ASKVEKAFSLFEEMKR--NGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNV 530
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +I+A + A L E M L G C P+V TYT LI +CK G
Sbjct: 531 VTYTALIHAYLKAKQMPVADELFEMMLLEG--CKPNVVTYTALIDGHCKAG 579
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G + ST + +I L + V +A + F MK+ P VY Y ++I++ C+ G
Sbjct: 453 GKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQ 512
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+AR ++M G C P+V TYT LI +Y K
Sbjct: 513 QARKWFDEMLHKG--CTPNVVTYTALIHAYLK 542
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTST-VTCLIKVLGEEGLVNEALATFYRMKQFR 199
F + ++ + +MS RG + L T S+ + CL K + ++ L +M +
Sbjct: 661 FCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFK----DNRLDLVLKVLSKMLENS 716
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+V Y +++ LC++G ++A L+ +ME G C P+V TYT +I + K G
Sbjct: 717 CTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKG--CNPNVVTYTAMIDGFGKSG 770
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G ++ V+ + L G ++A M PD Y+ VI LC KA
Sbjct: 420 GVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKA 479
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L E+M+ G P VYTYTILI S+CK G+
Sbjct: 480 FSLFEEMKRNGI--VPSVYTYTILIDSFCKAGL 510
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ L E L EA+ +RM+ C P+V Y ++++ R G + + +L M G
Sbjct: 285 MVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEG 344
Query: 235 FRCPPDVYTYTILISSYCK 253
C P+ + LI +YCK
Sbjct: 345 --CYPNREIFNSLIHAYCK 361
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
++ T V L K+ G +EA +M++ C P+V Y +I+ + G +
Sbjct: 722 VIYTEMVDGLCKI----GKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLE 777
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L M G C P+ TY +LI+ C G+
Sbjct: 778 LFRDMCSKG--CAPNFITYRVLINHCCSNGL 806
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + V EA M C P+ Y+ VI+ C++G A+ + +M
Sbjct: 618 TYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKM 677
Query: 231 ELPGFRCPPDVYTYTILIS 249
G+ P++YTY+ I
Sbjct: 678 SERGY--SPNLYTYSSFID 694
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T++C L + G EA + F PD YN +++ LC F +A +L +M
Sbjct: 248 TLSCFAYSLCKGGKCREAFDLIDEAEDFV--PDTVFYNRMVSGLCEASLFEEAMDILHRM 305
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
C P+V TY IL+S + G
Sbjct: 306 RSSS--CIPNVVTYRILLSGCLRKG 328
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 189 LATFYRMKQFRCR-PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
+ ++++ C P+V Y +++ LC+ +A LL+ M G C P+ Y +
Sbjct: 600 MDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHG--CEPNQIVYDAV 657
Query: 248 ISSYCKYG 255
I +CK G
Sbjct: 658 IDGFCKIG 665
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I G+ G + + L F M C P+ Y V+IN C G ++A LL++M
Sbjct: 758 TYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEM 817
Query: 231 E 231
+
Sbjct: 818 K 818
>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Cucumis sativus]
gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Cucumis sativus]
Length = 534
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 38/178 (21%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F++W F H+ EM I A GL +L ++ + N E +T T +
Sbjct: 131 ALAFFNWATAGEGFEHSPQPYNEM-IDLAGKVKQFGLAWYLIDLMKARNVE-ITVVTFSM 188
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRC---------------------------------- 200
L++ GL EA+ F RM+ + C
Sbjct: 189 LVRRYVRAGLAAEAVHAFNRMEDYGCNADIIAFSNVISILCKKRRAVEAQSFFDNLKHKF 248
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
PDV Y +++ CR G+ ++A + +M++ G P+VYTY+I+I + C+ G T
Sbjct: 249 EPDVIVYTSLVHGWCRAGDISEAESVFREMKMAGIS--PNVYTYSIVIDALCRSGQIT 304
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ G ++EA + F MK P+VY Y++VI+ALCR G +A + +M
Sbjct: 256 TSLVHGWCRAGDISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQITRAHDVFAEMLD 315
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C P+ T+ LI + + G
Sbjct: 316 AG--CNPNSVTFNNLIRVHLRAG 336
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R ++ +EM G V T ++ +I L G + A F M C
Sbjct: 262 WCRAGDISEAESVFREMKMAGISPNVYTYSI--VIDALCRSGQITRAHDVFAEMLDAGCN 319
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+ +N +I R G K + QM+ RC D+ TY LI ++CK
Sbjct: 320 PNSVTFNNLIRVHLRAGRTEKVLQVYNQMK--RLRCAADLITYNFLIETHCK 369
>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Brachypodium distachyon]
Length = 801
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G L ++T L+ L + G+ +AL F M + PDV Y V++++LC G
Sbjct: 208 SGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSSLCNEGRIED 267
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A LL M+ G CPPD TYT+ +S CK G
Sbjct: 268 AGRLLCSMKENG--CPPDEVTYTVFLSGLCKAG 298
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Query: 136 KEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195
+ + ++ A + ++D L + R G ++ L+ G EA+ F RM
Sbjct: 113 RAVSVLLASEPDAVAMFDALADA--RAAGLPAPSAAFRALVLAHSSAGRHQEAVEAFSRM 170
Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
F CRP + YN V L G A L +M G C P+ TY +L+ CK G
Sbjct: 171 GDFDCRPTAFVYNAVFQVLVDRGVILLALALYNRMVSSG--CLPNSTTYIVLMDGLCKRG 228
Query: 256 M 256
M
Sbjct: 229 M 229
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N+ + EM + N ++ ++T +I L ++GL+++A+ F M + C P V
Sbjct: 403 GNIDRAQSLMSEMLQ--NNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVM 460
Query: 206 AYNVVINALCRVGNFNKARFLLEQMEL 232
YN +I+ L R G +AR L +ME+
Sbjct: 461 TYNALIDGLYRAGMLEEARMLFHKMEM 487
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 155 LKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
++ SR G+ + T+ V + +VL + G++ ALA + RM C P+ Y V+++
Sbjct: 164 VEAFSRMGDFDCRPTAFVYNAVFQVLVDRGVILLALALYNRMVSSGCLPNSTTYIVLMDG 223
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G A + ++M G PDV YT+L+SS C G
Sbjct: 224 LCKRGMAVDALKMFDEMLERGI--VPDVKIYTVLLSSLCNEG 263
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
FA K + L EM + G + T L+K L + G ++ A + M Q
Sbjct: 364 FAEAGRTKDAFLLLDEM--KDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVV 421
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
D +N++I LC+ G +KA + ++M G C P V TY LI + GM
Sbjct: 422 LDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHG--CHPTVMTYNALIDGLYRAGM 474
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI+ E G +A MK PD + YN ++ AL VGN ++A+ L+ +M
Sbjct: 358 TILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQ 417
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
D T+ I+I CK G+
Sbjct: 418 NNV--VLDSTTHNIMICGLCKKGL 439
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G ++ T ++ L+ + + G V +A + + PDV YN +IN LC+ N +
Sbjct: 500 GANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLD 559
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISS 250
A L ++++L G PD TY LI
Sbjct: 560 GALRLFKELQLKGI--SPDEITYGTLIDG 586
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 57/145 (39%), Gaps = 36/145 (24%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
RG V L F EM RG V TV L+ L EG + +A MK+ C PD
Sbjct: 227 RGMAVDALKMF-DEMLERGIVPDVKIYTV--LLSSLCNEGRIEDAGRLLCSMKENGCPPD 283
Query: 204 VYAYNVVINALCRVGNFNKA--RFLLEQ-----MELPGFRC------------------- 237
Y V ++ LC+ G ++A RF L Q + L G+ C
Sbjct: 284 EVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYT 343
Query: 238 -------PPDVYTYTILISSYCKYG 255
PD+ YTILI + + G
Sbjct: 344 EMLGKSISPDITLYTILIRRFAEAG 368
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+CLI L + G +E L+ + M PD+ Y ++I G A LL++M+
Sbjct: 323 SCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKD 382
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
GF PD + Y L+ + G
Sbjct: 383 KGF--VPDTFCYNTLLKALFDVG 403
>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 592
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
+G++ T L+ L + +++A+A ++ PD+ +YN+VI+ +CRVG
Sbjct: 417 ASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELE 476
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
A L + G PDV+TYTI+I+ C G+
Sbjct: 477 AAGDLFSSLSSKGLH--PDVWTYTIMINGLCLQGL 509
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+EM +R ELV T LI L G + +A+A F+ M PD+ Y ++++
Sbjct: 376 LFEEMCQR---ELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLD 432
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ + ++A +L+ +E G PD+ +Y I+I C+ G
Sbjct: 433 YLCKTRHLDQAMAMLKAIE--GSNLAPDIQSYNIVIDGMCRVG 473
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T+T T LI+ L EG + EAL F +M +P+ Y +I+ LC+VGN A LL
Sbjct: 144 TATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLR 203
Query: 229 QMELPGFRCPPDVYTYTILIS 249
M C P+V TY +I
Sbjct: 204 SMVQK--NCEPNVITYNTIID 222
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 18/127 (14%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+ CKE + A D + M +RG V T T L E ++EA
Sbjct: 292 DALCKEGMVTIAH--------DVVDVMIQRGVEPDVVTYTALMDGHCLRSE--MDEADKV 341
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM---ELPGFRCPPDVYTYTILI 248
F M + C P+V +Y+ +IN C++ +KA +L E+M EL P++ TY LI
Sbjct: 342 FDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQREL-----VPNIVTYNTLI 396
Query: 249 SSYCKYG 255
C G
Sbjct: 397 HGLCHVG 403
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L ++ VNEAL F M P+V YN +I+ LC+ + L+ +M
Sbjct: 216 TYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEM 275
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQT 258
+ P+V +T L+ + CK GM T
Sbjct: 276 --VDSKIMPNVVIFTTLVDALCKEGMVT 301
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ L +EG+V A M Q PDV Y +++ C ++A + + M
Sbjct: 288 TTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVR 347
Query: 233 PGFRCPPDVYTYTILISSYCK 253
G C P+V +Y+ LI+ YCK
Sbjct: 348 KG--CAPNVISYSTLINGYCK 366
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+ F M Q P++ YN +I+ LC VG A L +M G PD+ TY
Sbjct: 370 IDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQ--IPDLVTY 427
Query: 245 TILISSYCK 253
IL+ CK
Sbjct: 428 RILLDYLCK 436
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EAL++F RM + P V + ++ ++ + +++ L +QM+ G P DVYT
Sbjct: 55 IDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGI--PSDVYTL 112
Query: 245 TILISSYC 252
I+I+S+C
Sbjct: 113 AIVINSFC 120
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G A+ M Q C P+V YN +I+ L + N+A + +M G
Sbjct: 185 LIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKG 244
Query: 235 FRCPPDVYTYTILISSYCKY 254
P+V TY +I CK+
Sbjct: 245 I--SPNVSTYNSIIHGLCKF 262
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 4/116 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ D +S +G V T T+ +I L +GL+ EA F M C
Sbjct: 469 MCRVGELEAAGDLFSSLSSKGLHPDVWTYTI--MINGLCLQGLLAEATKLFREMNTDGCS 526
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
PD YN++ R A LL++M GF D T T+++ G+
Sbjct: 527 PDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGF--SADASTITLIVEMLSDDGLD 580
>gi|159465707|ref|XP_001691064.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
gi|158279750|gb|EDP05510.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
Length = 630
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI + G AL F M+Q C P+ YN ++ A + G + KA + EQM
Sbjct: 245 TYSSLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQM 304
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C PDV TYT LIS+Y + G
Sbjct: 305 TAHG--CTPDVVTYTALISAYERGG 327
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
+V + + EM +R V T T L+ V + G + AL + M+ C P+V
Sbjct: 81 SQDVDRAMELMNEMRQRNIERNV--HTFTALMNVCIKCGKLPLALEIYNNMRAANCMPNV 138
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
YN +++ ++G + +A +L+ M+ G P + TY LI
Sbjct: 139 VTYNTLVDVYGKLGRWERAIHVLDLMKQEGVE--PVLRTYNTLI 180
>gi|255578090|ref|XP_002529915.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530592|gb|EEF32469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 636
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQF-RCRPDVYAYNVVINALCRVGNFNKARF 225
V+ + T L+ G GL+++A + MK+ C+PDV+ Y+++I + +V F+KA+
Sbjct: 188 VSHESYTALLSAYGRSGLLDKAFSLLEEMKRNPDCQPDVHTYSILIKSCVQVFAFDKAKT 247
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LL ME G P+ TY LI +Y K M
Sbjct: 248 LLSNMESLGI--SPNTITYNTLIDAYGKAKM 276
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LI G+ + E AT +M Q C PDV+ N + A G
Sbjct: 261 TITYNTLIDAYGKAKMFEEMEATLVKMLSQQNCEPDVWTMNSTLRAFGISGQIETMEKCY 320
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
E+ + G P + T+ +L+ SY K G
Sbjct: 321 EKFQGAGIE--PSIMTFNVLLDSYGKAG 346
>gi|50261843|gb|AAT72474.1| AT1G03560 [Arabidopsis lyrata subsp. petraea]
Length = 201
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G V+EA F M + C D Y YN +I+A + G
Sbjct: 82 RFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKV 141
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME C VYTYTILIS
Sbjct: 142 DEALALFKRMEEEE-GCDQTVYTYTILISG 170
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
E A F M + +P+V Y V+I+ + G+ A LL +M GF PDV TY++
Sbjct: 3 EGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFN--PDVVTYSV 60
Query: 247 LISSYCKYG 255
+++ CK G
Sbjct: 61 VVNGLCKNG 69
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 52/136 (38%), Gaps = 39/136 (28%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
+ M R+G+ V TV LI + G V +A+ +RM PDV Y+VV+N L
Sbjct: 8 FENMIRKGSKPNVAIYTV--LIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGL 65
Query: 215 C-----------------------------------RVGNFNKARFLLEQMELPGFRCPP 239
C + G ++A L E+M G C
Sbjct: 66 CKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKG--CTR 123
Query: 240 DVYTYTILISSYCKYG 255
D Y Y LI ++ K+G
Sbjct: 124 DSYCYNALIDAFTKHG 139
>gi|302792409|ref|XP_002977970.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
gi|300153991|gb|EFJ20627.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
Length = 695
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G++ EA + RM Q C P+V +YN++I+ C+ N KA L +ME G
Sbjct: 16 LISCLCKAGMLAEAESYLKRMPQ-HCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELG 74
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PP + Y+ ++ S+CK G
Sbjct: 75 H--PPTPHAYSSIVQSFCKTG 93
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 12/165 (7%)
Query: 90 IANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVK 149
++ N+++ G RN +K + + E H H + + V F + NV
Sbjct: 45 VSYNIIIDGYCKARNIEKALAFLREMEELGH--PPTPHAYSSIVQS------FCKTGNVS 96
Query: 150 GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
D EM +G + V L+ L ++EA F M C+PDV YN
Sbjct: 97 KAMDVFAEMPAKGCEPDIVNFNV--LLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNT 154
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+I LC+ ++A FLLE+M+ P TYT LI CK+
Sbjct: 155 MIAGLCKWKKLDEAVFLLERMKQEDV--SPTFVTYTTLIDHLCKF 197
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
AR + ++ KEMSR +LV +S + L+ + G V+EA +M
Sbjct: 479 LARAGRLDDAFELYKEMSRINCQQLVGSSNI--LLDGILRRGSVDEAKDFLKQMTDTGIV 536
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD + Y+ ++ LC G ++AR L+E++ G R P+ L+ + C G
Sbjct: 537 PDKFTYDKLVVGLCWQGKADQARKLVEELVRDGKR--PENQGLRQLLGALCAQG 588
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+ YN +I+ LC+ G +A L++M C P+V +Y I+I YCK
Sbjct: 8 PNAILYNNLISCLCKAGMLAEAESYLKRMPQ---HCAPNVVSYNIIIDGYCK 56
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ +EM RG V T T L +L L + T++ + Q R PD +YN++I
Sbjct: 311 EMFQEMRGRGISPTVVTYN-TLLEGLLSTAKLQDAMELTYFMLDQGRL-PDTCSYNLMIR 368
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C G+ N+A L + M G + +TY +I + K
Sbjct: 369 GFCANGDTNEAYCLFQDMIKDGIVL--NTWTYNFMIVGFIK 407
>gi|297746144|emb|CBI16200.3| unnamed protein product [Vitis vinifera]
Length = 1093
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ LG G ++++ MK+ R +PDV YN++IN LC+ G +A +L +M++ G
Sbjct: 700 LMSDLGRRGRIDDSKTLLLEMKRRRFKPDVVTYNILINHLCKEGRALEAYKVLVEMQVGG 759
Query: 235 FRCPPDVYTYTILISSYCK 253
C P+ TY +++ +C+
Sbjct: 760 --CEPNAATYRMMVDGFCQ 776
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+G + +G+ + G L++M ++ + T L++ L G EA + M
Sbjct: 631 IGFLCGKGD-LDGAMGLLEDMIQKRHRP--NAVTYALLMEGLCSLGKYKEAKKMMFDMDY 687
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+P + + V+++ L R G + ++ LL +M+ F+ PDV TY ILI+ CK G
Sbjct: 688 QGCKPRLLNFGVLMSDLGRRGRIDDSKTLLLEMKRRRFK--PDVVTYNILINHLCKEG 743
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
KG WD ++ + V + VT LI L +G ++ A+ M Q R RP+
Sbjct: 602 KGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLCGKGDLDGAMGLLEDMIQKRHRPNAVT 661
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +++ LC +G + +A+ ++ M+ G C P + + +L+S + G
Sbjct: 662 YALLMEGLCSLGKYKEAKKMMFDMDYQG--CKPRLLNFGVLMSDLGRRG 708
>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Vitis vinifera]
Length = 624
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L++ G+ G +EA F M++ C DV AYN ++ ALC+ GN ++A L +M
Sbjct: 221 TYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREM 280
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G PD +Y+I I +YC+
Sbjct: 281 GSNGL--APDACSYSIFIRAYCE 301
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
VN+AL RM++ C PD + YN+V+ L RVG F++ + ME GF P TY
Sbjct: 375 VNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEERGFY--PAASTY 432
Query: 245 TILISSYCK 253
+++ +CK
Sbjct: 433 AVMVHGFCK 441
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+G NV + +EM NG + + I+ E ++ A RM+++
Sbjct: 263 ALCKGGNVDEAYKLFREMG--SNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNL 320
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
P+V+ YN ++ LC+ ++A LL++M G PD+++Y + + +C +
Sbjct: 321 VPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGV--SPDLWSYNAIQAFHCDH 372
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+EM RG V L++ L + G V+EA F M PD +Y++ I A
Sbjct: 241 LFEEMRERGCA--VDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRA 298
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C V + + A +L++M + P+V+TY ++ CK
Sbjct: 299 YCEVNDIHSAFQVLDRMR--RYNLVPNVFTYNCIVKKLCK 336
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T C++K L + V+EA M + PD+++YN + C NKA L+ +M
Sbjct: 326 TYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRM 385
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E C PD +TY +++ + G
Sbjct: 386 EKEN--CMPDRHTYNMVLKMLLRVG 408
>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 513
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 147 NVKGLW----DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
N G W D +EM RG V +T T +I + G+ +A F M++ C P
Sbjct: 182 NKSGSWQLAEDVFREMQNRGVPPAV--NTFTLMINIYGKAHHSAKAEHLFQSMRKALCPP 239
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ Y +INA R GN +A + +++ GF PD+YTY L+ +Y + G
Sbjct: 240 SLFTYTALINAHAREGNCVRAEEIFAELQSVGF--VPDIYTYNALLEAYSRGG 290
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ G G +++ + + M+ C+PD+ N +IN + G +A + +E G
Sbjct: 387 LLGAYGNSGRMDKMESLYESMQGSVCKPDIITLNTLINVYAQGGYIERAEEIFNSLESKG 446
Query: 235 FRCPPDVYTYTILISSYCK 253
F PDV ++T L+ +Y K
Sbjct: 447 F--TPDVMSWTSLMGAYSK 463
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ G EA TF+ MK+F+C P ++NV++ A R G +A +L +M+
Sbjct: 107 LMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAYSRGGQLERAERVLHEMKES- 165
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P + TY + K G
Sbjct: 166 -NCSPGLVTYNTYLEVLNKSG 185
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
L T ++ L+ G + A + MK+ C P + YN + L + G++ A
Sbjct: 133 LPTETSFNVLMAAYSRGGQLERAERVLHEMKESNCSPGLVTYNTYLEVLNKSGSWQLAED 192
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCK 253
+ +M+ G PP V T+T++I+ Y K
Sbjct: 193 VFREMQNRG--VPPAVNTFTLMINIYGK 218
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI EG A F ++ PD+Y YN ++ A R G+ A+ + E M
Sbjct: 243 TYTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETM 302
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
G + D +Y ILI ++ + G+
Sbjct: 303 LEAGVKA--DHVSYNILIDAFGRAGL 326
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQF 198
++RG + G + + M G V V+ LI G GL+++A A + MK+
Sbjct: 285 AYSRGGHPAGAKEVFETMLEAG----VKADHVSYNILIDAFGRAGLISDAQAIYDSMKKV 340
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P + ++ ++++A + G A + ++E G PD + + L+ +Y G
Sbjct: 341 GFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESMGVE--PDTFMFNSLLGAYGNSG 395
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L++ G A F M + + D +YN++I+A R G + A+ + + M
Sbjct: 278 TYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSM 337
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQT 258
+ GF+ P + ++ +L+S++ K G T
Sbjct: 338 KKVGFK--PTMKSHILLLSAFVKAGRVT 363
>gi|296088922|emb|CBI38482.3| unnamed protein product [Vitis vinifera]
Length = 368
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALAT 191
TC + + GN KGL F MS+ N + ++C LI L G + AL
Sbjct: 213 TCSKCSGLQLAGNIEKGLALFEDMMSKGLN-----PNNISCNILINGLCRTGNIQHALEF 267
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
M PD+ YN +IN LC+ G +A L +++++ G C PD TY LIS +
Sbjct: 268 LRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGI-C-PDAITYNTLISWH 325
Query: 252 CKYGM 256
CK GM
Sbjct: 326 CKEGM 330
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEA 188
N ++C + R N++ +FL++M RG +T VT LI L + G EA
Sbjct: 244 NNISCNILINGLCRTGNIQHALEFLRDMIHRG----LTPDIVTYNSLINGLCKTGRAQEA 299
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
L F +++ PD YN +I+ C+ G F+ A LL + GF P+ T+ IL+
Sbjct: 300 LNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGF--IPNEVTWYILV 357
Query: 249 SSYCKYGMQ 257
S++ K G Q
Sbjct: 358 SNFIKEGDQ 366
>gi|125529279|gb|EAY77393.1| hypothetical protein OsI_05381 [Oryza sativa Indica Group]
Length = 573
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
E T + + L G +EA RMK +PD Y+ +I LC+ F++AR
Sbjct: 310 EFKTKDVFDGIHRALTSNGRFDEAAEIVKRMKGEGHQPDNITYSQLIFGLCKANRFDEAR 369
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L++ME G C PD+ T+T+LI +C G
Sbjct: 370 KALDEMEAEG--CVPDLKTWTMLIQGHCAAG 398
>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Brachypodium distachyon]
Length = 726
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+R V W+FL+ + +RGN T +I+ EG V EA+ F MK+
Sbjct: 256 LSRTRQVASAWNFLQMLCQRGNP--CNTYCFNAVIQGFCREGQVQEAIEVFDAMKKGGLV 313
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD ++Y+++++ LC+ G+ LL +M G P + +Y+ L+ C+ G
Sbjct: 314 PDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGI--APTLVSYSSLLHGLCRAG 365
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV--LGEEGLVNEALATFYRMKQFR 199
F R N+ + M G V+ + VTC I V G+E +++EA ++++QF
Sbjct: 431 FCRHRNLTDALGVFELMLDSG----VSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFG 486
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P++ Y V+IN LC+V + + M G+ PD Y+I+I S+ K
Sbjct: 487 IVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGY--VPDTVVYSIIIDSFVK 538
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+G+ + G +D L EM+R NG T + + L+ L G V A F R+++ + D
Sbjct: 329 QGDVLTG-YDLLVEMAR--NGIAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHD 385
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
Y++++N C+ N L M F PD Y YT LI ++C++
Sbjct: 386 HIVYSIILNGCCQHLNIEVVCDLWNDMVHHNF--VPDAYNYTSLIYAFCRH 434
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 146 NNVKGLWDFLKEMSRRGN--GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
N +W +M +RG +V + + +K L + EA F++M +P+
Sbjct: 505 NKSDHVWGIFADMIKRGYVPDTVVYSIIIDSFVKALK----LPEAFRLFHKMLDEGTKPN 560
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
V+ Y +IN LC + L + M G PD YT LI YCK
Sbjct: 561 VFTYTSLINGLCHDDRLPEVVTLFKHMIWEGL--TPDRILYTSLIVCYCK 608
>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
++ +R +G LV + V +I + + LVNEA F M PDV Y+ +I+
Sbjct: 211 DLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGF 270
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C +G A L +M L + PDVYT+ IL++++CK G
Sbjct: 271 CILGKLKDAIDLFNKMILENIK--PDVYTFNILVNAFCKDG 309
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ KEM R+ + T + LI L + G ++ AL +M P++ YN ++
Sbjct: 385 MNLFKEMHRKN--IIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSIL 442
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ALC+ +KA LL + + GF+ PD+ TY+ILI C+ G
Sbjct: 443 DALCKTHQVDKAIALLTKFKDKGFQ--PDISTYSILIKGLCQSG 484
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 152 WDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+D EM +G + ++VT S + +LG+ + +A+ F +M +PDVY +N++
Sbjct: 245 FDLFSEMVSKGISPDVVTYSALISGFCILGK---LKDAIDLFNKMILENIKPDVYTFNIL 301
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+NA C+ G + + + + M G + P+ TY L+ YC
Sbjct: 302 VNAFCKDGKMKEGKTVFDMMMKQGIK--PNFVTYNSLMDGYC 341
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T ++ L + V++A+A + K +PD+ Y+++I LC+ G AR + E +
Sbjct: 437 TYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDL 496
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
+ G+ DVY YTI+I +C G+
Sbjct: 497 LVKGYNL--DVYAYTIMIQGFCVEGL 520
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
ST + LIK L + G + +A F + DVYAY ++I C G FN+A LL +
Sbjct: 471 STYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSK 530
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
ME G C PD TY I+I S K
Sbjct: 531 MEDNG--CIPDAKTYEIIILSLFK 552
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
CL+K VN+A + F M Q PD+ +Y+++IN C++ F++A L ++M
Sbjct: 341 CLVKE------VNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRK 394
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
PDV TY+ LI K G
Sbjct: 395 NI--IPDVVTYSSLIDGLSKSG 414
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G AL R+ +P+V YN +I+++C+V N+A L +M G
Sbjct: 196 LIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKG 255
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PDV TY+ LIS +C G
Sbjct: 256 IS--PDVVTYSALISGFCILG 274
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ ++G + E F M + +P+ YN +++ C V NKA+ + M
Sbjct: 297 TFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTM 356
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G PD+ +Y+I+I+ +CK
Sbjct: 357 AQGGVN--PDIQSYSIMINGFCK 377
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+EA+ F M + PDV Y+ +I+ L + G + A L++QM G PP++ TY
Sbjct: 382 DEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRG--VPPNICTYN 439
Query: 246 ILISSYCK 253
++ + CK
Sbjct: 440 SILDALCK 447
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I+ EGL NEALA +M+ C PD Y ++I +L + + A LL +M
Sbjct: 509 TIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREM 566
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T T L K L +G + +A ++ D +Y +I+ LC+VG A
Sbjct: 150 GYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAA 209
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LL++++ G P+V Y +I S CK
Sbjct: 210 LDLLQRVD--GNLVQPNVVMYNTIIDSMCK 237
>gi|147857907|emb|CAN80394.1| hypothetical protein VITISV_001596 [Vitis vinifera]
Length = 356
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 113 NKATE---FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTT 169
N TE F++W + + +E+ AR + +W +M + ++
Sbjct: 45 NSGTESLRFFNWARSHXSYQPTTLEYEELLKTLARTKQFQPMWKIAHQM------QTLSP 98
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQ-FRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
+ V+ +I+ G+ GLV++A+ F + K C + YN ++ ALC V F+ A L+
Sbjct: 99 TVVSSIIEEFGKHGLVDQAVEVFNKAKSALNCPQTIEVYNSLLFALCEVKYFHGAYALIR 158
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M G P+ TY++L++ +C G
Sbjct: 159 RMIRKGV--TPNKQTYSVLVNGWCAAG 183
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 17/118 (14%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR----MKQFRC 200
+K DFL+EMSR+G V + L+ L G + A + M+ FR
Sbjct: 182 AGKMKEAQDFLEEMSRKGFNPPVRGRDL--LVDGLLNAGYLEAAKEMLAKRVELMRPFRI 239
Query: 201 ---------RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
RP Y +I ALCR G F+ A M++ G PP+ YT+LI+
Sbjct: 240 LHRSIEDGHRPFPSLYAPIIKALCRNGQFDDAFCFFSDMKVKGH--PPNRPVYTMLIT 295
>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
Length = 814
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI + G + EA + F M + RPDV + V+I+ LC+ GNF +A E+M
Sbjct: 334 TSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMR 393
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C P+V TYT +I K G
Sbjct: 394 GG--CKPNVVTYTTIIQGLSKIG 414
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G +V+ D L E S+ E + +I L + G ++EA F RM C+PD
Sbjct: 483 GGSVENTLDDLFEQSK-AAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDA 541
Query: 205 YAYNVVINALCRV--GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN++IN LCR +A LL +E+ G+ PD TYT L CK G
Sbjct: 542 TTYNILINGLCRSRENRVERAFALLHDLEMVGYL--PDAVTYTPLCIGLCKIG 592
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
FA+ +K EM G V T TV +I L + G +A +F M + C+
Sbjct: 340 FAKSGRMKEACSLFDEMVEAGYRPDVITHTV--MIDGLCKSGNFEQAAKSFEEMMRGGCK 397
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V Y +I L ++G A +++ M G C PD TY L+ +CK G
Sbjct: 398 PNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHG--CFPDSVTYICLLDGFCKLG 449
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 19/175 (10%)
Query: 89 NIANNVLVLGP----------AAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEM 138
NI N VLGP AA KVT A F+ W F H+ T +
Sbjct: 72 NIRN---VLGPVHGQVLGSHVAAVLRSLKVT---GTAISFFRWAGEQAGFQHDVFTYNCL 125
Query: 139 GIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
+ N + +EM + G T + LI+ ++A+ F MK+
Sbjct: 126 MNLLVAEKNYSQCYAIHEEMLKAGIAP--NTFSFNILIRSFARTRRADDAVTCFEIMKRK 183
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
RC+PD++ + ++++ LC+ G KA + +M GF PPD +T ++ + K
Sbjct: 184 RCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGF-VPPDRALHTAMVRTLLK 237
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L + G EAL M C P Y +++N+LC+ G +A L M G
Sbjct: 266 MIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASG 325
Query: 235 FRCPPDVYTYTILISSYCKYG 255
FR P+ YT LI + K G
Sbjct: 326 FR--PNSVIYTSLIHGFAKSG 344
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +++ L + V EA F +M++ PD AYN +I+ L + G+ +A +L+ M
Sbjct: 229 TAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLA 288
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
C P TY IL++S CK G
Sbjct: 289 KA--CVPTEVTYGILVNSLCKAG 309
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 60/144 (41%), Gaps = 15/144 (10%)
Query: 122 VERFFHFFHN---------EVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTST 171
VER F H+ VT + I + V L+E S RG N ++V
Sbjct: 559 VERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVA--- 615
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
T L L +G V+ A++ F M + PD AY +IN L + A ++M
Sbjct: 616 YTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMI 675
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
G + P V TYT L+ + C G
Sbjct: 676 GKGQK--PTVATYTALVQALCHAG 697
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T CL+ +L E ++ A M + P+ +++N++I + R + A E M
Sbjct: 121 TYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIM 180
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQ 257
+ RC PD++T+ IL+ CK GM
Sbjct: 181 KRK--RCKPDLHTFLILVDCLCKAGMD 205
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L+ L + G + A F M RP+ Y +I+ + G +A L
Sbjct: 294 TEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLF 353
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++M G+R PDV T+T++I CK G
Sbjct: 354 DEMVEAGYR--PDVITHTVMIDGLCKSG 379
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM R G V T T +I+ L + G V A M C PD Y +++ C
Sbjct: 389 EEMMRGGCKPNVVTYTT--IIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFC 446
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++G ++A LL+ EL P++ Y+ L+ C G
Sbjct: 447 KLGRLDEAAQLLD--ELDKCSSSPNLQLYSSLVKGLCDGG 484
>gi|115442501|ref|NP_001045530.1| Os01g0970900 [Oryza sativa Japonica Group]
gi|15289974|dbj|BAB63669.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
gi|113535061|dbj|BAF07444.1| Os01g0970900 [Oryza sativa Japonica Group]
gi|125573469|gb|EAZ14984.1| hypothetical protein OsJ_04919 [Oryza sativa Japonica Group]
gi|215678751|dbj|BAG95188.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215693250|dbj|BAG88632.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 573
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
E T + + L G +EA RMK +PD Y+ +I LC+ F++AR
Sbjct: 310 EFKTKDVFDGIHRALTSNGRFDEAAEIVKRMKGEGHQPDNITYSQLIFGLCKANRFDEAR 369
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L++ME G C PD+ T+T+LI +C G
Sbjct: 370 KALDEMEAEG--CVPDLKTWTMLIQGHCAAG 398
>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
Length = 528
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 113 NKATEFYHWVERFFH-------FFHNEVT---CKEMGIVFARGNNVKGLWDFLKEMSRRG 162
+ TE Y VE F +N + CKE NVK + + MSRRG
Sbjct: 266 GRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKE--------GNVKKALEIFENMSRRG 317
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
T T T LI L ++G V E F + RPD+ YN +IN+ GN ++
Sbjct: 318 --VRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDR 375
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A ++ +ME R PD TY L+ C G
Sbjct: 376 AFEIMGEMEKK--RIAPDDVTYNTLMRGLCLLG 406
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G +T +T L+ L +G EA M PDV+ YN++IN C+ GN KA
Sbjct: 247 GVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKA 306
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ E M G R V TYT LI + K G
Sbjct: 307 LEIFENMSRRGVRAT--VVTYTALIYALSKKG 336
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
++G ++ AL RM + V YN++++AL G +A L+E+M G PD
Sbjct: 229 DQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGL--APD 286
Query: 241 VYTYTILISSYCKYG 255
V+TY ILI+ +CK G
Sbjct: 287 VFTYNILINGHCKEG 301
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 195 MKQFRCR----PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M++ R R P+ Y Y VI+ C+VG ++A + ++M G P+ Y LI
Sbjct: 168 MREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKG-EVKPEAVMYNALIGG 226
Query: 251 YCKYG 255
YC G
Sbjct: 227 YCDQG 231
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 146 NNVKGLWDFLKEMSR-RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
N+ ++ + EM + R + VT +T L++ L G V+EA M + +PD+
Sbjct: 371 GNIDRAFEIMGEMEKKRIAPDDVTYNT---LMRGLCLLGRVDEARKLIDEMTERGIQPDL 427
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN +I+ G+ A + +M GF P + TY LI CK G
Sbjct: 428 VTYNTLISGYSMKGDVKDALRIRNEMMNKGFN--PTLLTYNALIQGLCKNG 476
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ EM+ RG +LVT +T LI +G V +AL M P + YN +I
Sbjct: 414 LIDEMTERGIQPDLVTYNT---LISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 470
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
LC+ G + A ++++M G PD TY LI
Sbjct: 471 GLCKNGQGDDAENMVKEMVENGI--TPDDSTYISLI 504
>gi|414876286|tpg|DAA53417.1| TPA: hypothetical protein ZEAMMB73_373649 [Zea mays]
Length = 561
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L + G++ +AL F RM++ R VY YN +IN C+ NF++AR LL +M
Sbjct: 88 TYAILIHSLCKRGMMEDALCMFDRMREKGIRMTVYPYNSLINGYCKHNNFHQARGLLNEM 147
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P +Y+ LI+ C+ G
Sbjct: 148 VAKGL--TPSPASYSPLIAGLCRKG 170
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ + +EM+R N T T LI ++G ++EA F++M +
Sbjct: 166 LCRKGDLASAMELHREMTR--NAVSGNVYTFTALISGFCKDGNMDEATRLFHKMMESSLV 223
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P+ +NV+I CRVGN KA L +QM G PD YTY LIS C
Sbjct: 224 PNEVTFNVMIEGYCRVGNIRKAFQLYDQMLDRGL--TPDNYTYRSLISVVC 272
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T T LIK G + A+ + + PD +Y+ +IN LC+VG+ NKA
Sbjct: 357 GCLANTVTFNTLIKGFCMAGQIQGAIDLMQKNTESGFFPDCISYSTIINELCKVGDTNKA 416
Query: 224 RFLLEQMELPGFRCPPDVYTYTILI 248
L +M G + PD+ YTILI
Sbjct: 417 FELWNEMLYKGLK--PDIVAYTILI 439
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
I LG++G EA F M P+ Y ++I++LC+ G A + ++M G
Sbjct: 58 IDRLGKDGRYREAEKLFRGMADRGLDPNEVTYAILIHSLCKRGMMEDALCMFDRMREKGI 117
Query: 236 RCPPDVYTYTILISSYCKY 254
R VY Y LI+ YCK+
Sbjct: 118 RMT--VYPYNSLINGYCKH 134
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + NN L EM +G + ++ + LI L +G + A+ M +
Sbjct: 131 YCKHNNFHQARGLLNEMVAKGLTP--SPASYSPLIAGLCRKGDLASAMELHREMTRNAVS 188
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+VY + +I+ C+ GN ++A L +M P+ T+ ++I YC+ G
Sbjct: 189 GNVYTFTALISGFCKDGNMDEATRLFHKMMESSL--VPNEVTFNVMIEGYCRVG 240
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
L + T C + L EG + +A M + C + +N +I C G A
Sbjct: 325 LPNSYTYNCFLDYLANEGELEKAKVLHAAMLE-GCLANTVTFNTLIKGFCMAGQIQGAID 383
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L+++ GF PD +Y+ +I+ CK G
Sbjct: 384 LMQKNTESGFF--PDCISYSTIINELCKVG 411
>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT + + + +WD + E++ RG + T L+ L + V++A+A
Sbjct: 368 NTVTYSSLIDGLCKSGRISDVWDLIDEINNRG--QPANIITYNSLLNGLCKNHQVDKAIA 425
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+MK +PD+ Y +++ LC+ G A+ + + + G+ P ++ YT++I+
Sbjct: 426 LLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGY--PLNIRMYTVMING 483
Query: 251 YCKYG 255
CK G
Sbjct: 484 LCKEG 488
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T TV L++ L G V EAL + + R D +Y +IN LC+ G A LL
Sbjct: 123 TVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLR 182
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
++E PDV YT +I S+CK
Sbjct: 183 KIE-GLLLVRPDVIMYTAIIDSFCK 206
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + EA+ M P+VY +N++I+ LC+ G KA +L M G P+V
Sbjct: 243 GQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVE--PNVV 300
Query: 243 TYTILISSY 251
TYT L+ Y
Sbjct: 301 TYTSLMDGY 309
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
VN+A F + P+V++Y+V+IN LC+ ++A L ++M L P+ TY
Sbjct: 315 VNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNM--TPNTVTY 372
Query: 245 TILISSYCKYG 255
+ LI CK G
Sbjct: 373 SSLIDGLCKSG 383
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L +EG V +A + M + P+V Y +++ V NKA+ + +
Sbjct: 266 TFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTI 325
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM 256
L G P+V++Y+++I+ CK M
Sbjct: 326 SLRG--VTPNVHSYSVMINGLCKNKM 349
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L +EG +EAL+ +M+ C PD Y +I+AL + KA LL +M
Sbjct: 478 TVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREM 535
>gi|357498031|ref|XP_003619304.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494319|gb|AES75522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 805
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + W L +M RG V T L+ L + V++A+A K +
Sbjct: 440 FCKSGRLSHAWKLLDQMRDRGQPPNVIT--YNSLLHALCKNHHVDKAIALVNNFKDQGIQ 497
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD++ YN +++ LC+ G A+ + + + + G+ P +TY I+I+ C G+
Sbjct: 498 PDMHTYNTLVDGLCKQGRLKDAQLIFQDLLIKGYNLP--TWTYNIMINGLCLEGL 550
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
+V+EAL F M C+P+ +YN +I+ C+ G + A LL+QM G PP+V T
Sbjct: 413 MVDEALNLFTEM---HCKPNTVSYNTLIDGFCKSGRLSHAWKLLDQMRDRGQ--PPNVIT 467
Query: 244 YTILISSYCK 253
Y L+ + CK
Sbjct: 468 YNSLLHALCK 477
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF------RCPPD 240
+A + F+ M P+VY +N++++ALC+ G +A+ ++ +M C P+
Sbjct: 370 KAFSLFHEMVLKNINPNVYTFNILVDALCKDGKIKEAKNVIIKMVDEALNLFTEMHCKPN 429
Query: 241 VYTYTILISSYCKYG 255
+Y LI +CK G
Sbjct: 430 TVSYNTLIDGFCKSG 444
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T + LI + G ++ A +M+ P+V YN +++ALC+ + +KA L+
Sbjct: 430 TVSYNTLIDGFCKSGRLSHAWKLLDQMRDRGQPPNVITYNSLLHALCKNHHVDKAIALVN 489
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+ G + PD++TY L+ CK G
Sbjct: 490 NFKDQGIQ--PDMHTYNTLVDGLCKQG 514
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T+T LIK L G VNEAL + + Y ++IN LC++G A +L
Sbjct: 261 TITLTTLIKGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLR 320
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
Q+E G +V Y+ +I CK
Sbjct: 321 QIE--GKLVNTNVVMYSTVIDGLCK 343
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T +I L EGL++EA +M+ C PDV Y +I+AL +KA L+
Sbjct: 535 TWTYNIMINGLCLEGLLDEAETLLSKMEDNGCIPDVVTYQTIIHALFEKDENDKAEKLVR 594
Query: 229 QMELPGFRCPP 239
++ + FR P
Sbjct: 595 ELIVRVFRKSP 605
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN-FNKARFLLEQMELPGFRCPPDVY 242
+V+ A+ +F RM Q R P + +N ++ L + N + L QME G + PD++
Sbjct: 185 VVDNAVLSFNRMLQMRHTPSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVK--PDLF 242
Query: 243 TYTILISSY 251
T +ILI+ Y
Sbjct: 243 TLSILINCY 251
>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 418
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + T T LI + G V+ A+ + +M PD+ YN +I LC+ G+ +
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A+ L+++M + G + PD TYT LI CK G
Sbjct: 295 AQDLIDEMSMKGLK--PDKVTYTTLIDGSCKEG 325
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++K D + EMS +G T T LI +EG + A RM + R
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKP--DKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIR 343
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D AY +I+ LC+ G A +L +M G + P++ TYT++I+ +CK G
Sbjct: 344 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK--PEIGTYTMIINEFCKKG 395
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+EG + A + F + ++ RP ++N ++N R+G+ ++ L M+ G + PD
Sbjct: 148 KEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQ--PD 205
Query: 241 VYTYTILISSYCK 253
VYTY++LI+ CK
Sbjct: 206 VYTYSVLINGLCK 218
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++E M+ +PDVY Y+V+IN LC+ + A L +M G P+
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGL--VPNGV 242
Query: 243 TYTILISSYCKYG 255
T+T LI +CK G
Sbjct: 243 TFTTLIDGHCKNG 255
>gi|218192883|gb|EEC75310.1| hypothetical protein OsI_11678 [Oryza sativa Indica Group]
Length = 473
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 157 EMSRRGNGELV----TTSTVTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
EM+R+ E++ STV+C I V G G V+EAL F M + DV YN++
Sbjct: 342 EMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNIL 401
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I LC+ G ++A + EQ+ G P V T+T LI + C+ G
Sbjct: 402 IQGLCKAGRLSEAIQVYEQLLSSGLE--PSVSTFTPLIDTMCEEG 444
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+EAL F +K D Y I+ LC++G ++AR + +M G P+ Y Y
Sbjct: 272 SEALRVFNEIKLRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGME--PNEYAYC 329
Query: 246 ILISSYCKYG 255
L++ YCK G
Sbjct: 330 SLVAYYCKAG 339
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
V T T I L + G ++EA + M P+ YAY ++ C+ G+F AR +
Sbjct: 288 VDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMARKV 347
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
++M G + + IL++ +C +G
Sbjct: 348 YDEMLGKGLK--ESTVSCNILVTGFCTHG 374
>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 418
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + T T LI + G V+ A+ + +M PD+ YN +I LC+ G+ +
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A+ L+++M + G + PD TYT LI CK G
Sbjct: 295 AQDLIDEMSMKGLK--PDKITYTTLIDGNCKEG 325
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+EG + A + F + ++ RP V ++N ++N ++G+ ++ L M+ G + PD
Sbjct: 148 KEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQ--PD 205
Query: 241 VYTYTILISSYCK 253
VYTY++LI+ CK
Sbjct: 206 VYTYSVLINGLCK 218
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++K D + EMS +G T T LI +EG + A +M + R
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKP--DKITYTTLIDGNCKEGDLETAFEYRKKMIKENIR 343
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D AY +I+ LC+ G A +L +M G + P++ TYT++I+ +CK G
Sbjct: 344 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK--PEIGTYTMIINEFCKKG 395
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++E M+ +PDVY Y+V+IN LC+ + A L ++M G P+
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGL--VPNGV 242
Query: 243 TYTILISSYCKYG 255
T+T LI +CK G
Sbjct: 243 TFTTLIDGHCKNG 255
>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 418
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + T T LI + G V+ A+ + +M PD+ YN +I LC+ G+ +
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A+ L+++M + G + PD TYT LI CK G
Sbjct: 295 AQDLIDEMSMKGLK--PDKITYTTLIDGNCKEG 325
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++K D + EMS +G T T LI +EG + A RM + R
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKP--DKITYTTLIDGNCKEGDLETAFEYRKRMIKENIR 343
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D AY +I+ LC+ G A +L +M G + P++ TYT++I+ +CK G
Sbjct: 344 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK--PEIGTYTMIINEFCKKG 395
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+EG + A + F + ++ RP V ++N ++N ++G+ ++ L M+ G + PD
Sbjct: 148 KEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQ--PD 205
Query: 241 VYTYTILISSYCK 253
VYTY++LI+ CK
Sbjct: 206 VYTYSVLINGLCK 218
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++E M+ +PDVY Y+V+IN LC+ + A L ++M G P+
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGL--VPNGV 242
Query: 243 TYTILISSYCKYG 255
T+T LI +CK G
Sbjct: 243 TFTTLIDGHCKNG 255
>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
[Burroughsia fastigiata]
Length = 431
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + G V+ A+ + +M PD+ YN +I LC+ G+ N+A L+++M
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEM 308
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G + PD TYT LI CK G
Sbjct: 309 SMKGLK--PDKITYTTLIDGCCKEG 331
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+EG + A + F + ++ RP V +YN ++N R+G+ ++ L M G PD
Sbjct: 154 KEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVX--PD 211
Query: 241 VYTYTILISSYCK 253
VYTY++LI+ CK
Sbjct: 212 VYTYSVLINGLCK 224
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D + EMS +G T T LI +EG ++ A RM Q R D AY +I+
Sbjct: 303 DLIDEMSMKGLKP--DKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALIS 360
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G A ++ +M G + PD TYT++I+ CK G
Sbjct: 361 GLCQEGRSVDAEKMMREMLSVGLK--PDTGTYTMIINEVCKKG 401
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++E M PDVY Y+V+IN LC+ + A L ++M + G P+
Sbjct: 191 GDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGL--VPNGV 248
Query: 243 TYTILISSYCKYG 255
T+T LI +CK G
Sbjct: 249 TFTTLIDGHCKNG 261
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI L +EG +A M +PD Y ++IN +C+ G+ K LL++M+
Sbjct: 356 TALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQX 415
Query: 233 PGFRCPPDVYTYTILISS 250
G P V TY +L++
Sbjct: 416 DGH--APSVVTYNVLMNG 431
>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
Length = 814
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI + G + EA + F M + RPDV + V+I+ LC+ GNF +A E+M
Sbjct: 334 TSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMR 393
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G C P+V TYT +I K G
Sbjct: 394 GG--CKPNVVTYTTIIQGLSKIG 414
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G +V+ D L E S+ E + +I L + G ++EA F RM C+PD
Sbjct: 483 GGSVEKTLDDLFEQSK-AAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDA 541
Query: 205 YAYNVVINALCRV--GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN++IN LCR +A LL +E G+ PD TYT L CK G
Sbjct: 542 TTYNILINGLCRSRENRVERAFALLHDLEKVGYL--PDAVTYTPLCIGLCKIG 592
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
FA+ +K EM G V T TV +I L + G +A +F M + C+
Sbjct: 340 FAKSGRMKEACSLFDEMVEAGYRPDVITHTV--MIDGLCKSGNFEQAAKSFEEMMRGGCK 397
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V Y +I L ++G A +++ M G C PD TY L+ +CK G
Sbjct: 398 PNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHG--CFPDSVTYICLLDGFCKLG 449
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 19/175 (10%)
Query: 89 NIANNVLVLGP----------AAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEM 138
NI N VLGP AA KVT A F+ W F H+ T +
Sbjct: 72 NIRN---VLGPVHGQVLGSHVAAVLRSLKVT---GTAISFFRWAGEQAGFQHDVFTYNCL 125
Query: 139 GIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
+ N + +EM + G T + LI+ ++A+ F MK+
Sbjct: 126 MNLLVAEKNYSQCYAIHEEMLKAGIAP--NTFSFNILIRSFARTRRADDAVTCFEIMKRK 183
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
RC+PD++ + ++++ LC+ G KA + +M GF PPD +T ++ + K
Sbjct: 184 RCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGF-VPPDRALHTAMVRTLLK 237
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L + G EAL M C P Y +++N+LC+ G +A L M G
Sbjct: 266 MIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASG 325
Query: 235 FRCPPDVYTYTILISSYCKYG 255
FR P+ YT LI + K G
Sbjct: 326 FR--PNSVIYTSLIHGFAKSG 344
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 12/169 (7%)
Query: 88 DNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN 147
D N+L+ G R + + +A H +E+ + + VT + I +
Sbjct: 540 DATTYNILINGLCRSRENR-----VERAFALLHDLEKV-GYLPDAVTYTPLCIGLCKIGE 593
Query: 148 VKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
V L+E S RG N ++V T L L +G V+ A++ F M + PD A
Sbjct: 594 VDRAVKMLEEASSRGWNADVVA---YTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAA 650
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y +IN L +V A ++M G + P V TYT L+ + C G
Sbjct: 651 YCCIINGLIKVKKLEDACKFFDEMIGKGQK--PTVATYTALVQALCHAG 697
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +++ L + V EA F +M++ PD AYN +I+ L + G+ +A +L+ M
Sbjct: 229 TAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLA 288
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
C P TY IL++S CK G
Sbjct: 289 KA--CVPTEVTYGILVNSLCKAG 309
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T CL+ +L E ++ A M + P+ +++N++I + R + A E M
Sbjct: 121 TYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIM 180
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQ 257
+ RC PD++T+ IL+ CK GM
Sbjct: 181 KRK--RCKPDLHTFLILVDCLCKAGMD 205
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L+ L + G + A F M RP+ Y +I+ + G +A L
Sbjct: 294 TEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLF 353
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++M G+R PDV T+T++I CK G
Sbjct: 354 DEMVEAGYR--PDVITHTVMIDGLCKSG 379
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM R G V T T +I+ L + G V A M C PD Y +++ C
Sbjct: 389 EEMMRGGCKPNVVTYTT--IIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFC 446
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++G ++A LL+ EL P++ Y+ L++ C G
Sbjct: 447 KLGRLDEAAQLLD--ELDKCSSSPNLQLYSSLVNGLCDGG 484
>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 418
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + T T LI + G V+ A+ + +M PD+ YN +I LC+ G+ +
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A+ L+++M + G + PD TYT LI CK G
Sbjct: 295 AQDLIDEMSMKGLK--PDKITYTTLIDGNCKEG 325
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++K D + EMS +G T T LI +EG + A RM + R
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKP--DKITYTTLIDGNCKEGDLETAFEYRKRMIKENIR 343
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D AY +I+ LC+ G A +L +M G + P++ TYT++I+ +CK G
Sbjct: 344 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK--PEIGTYTMIINEFCKKG 395
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+EG + A + F + ++ RP V ++N ++N ++G+ ++ L M+ G + PD
Sbjct: 148 KEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQ--PD 205
Query: 241 VYTYTILISSYCK 253
VYTY++LI+ CK
Sbjct: 206 VYTYSVLINGLCK 218
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++E M+ +PDVY Y+V+IN LC+ + A L ++M G P+
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGL--VPNGV 242
Query: 243 TYTILISSYCKYG 255
T+T LI +CK G
Sbjct: 243 TFTTLIDGHCKNG 255
>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
Length = 793
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 153 DFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+ L+EM +G V +S VT ++K L EG + EAL M + PDV YN +
Sbjct: 371 NLLEEMREKG----VKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTL 426
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
I+A C+ GN KA L+++M G + D +T L+ + CK
Sbjct: 427 IDASCKAGNVAKAFVLMDEMVRSGLKM--DTFTLNTLLYNLCK 467
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ +G + +AL+T +M+ F PD YN ++NA CR G +AR LL +M
Sbjct: 211 TFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARM 270
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G P TY L+S+Y + G
Sbjct: 271 KKEGIV--PTRATYNTLVSAYARLG 293
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
LWD EM +R + ST LIK L G + EA+ + + PD YN++
Sbjct: 512 LWD---EMIKRKLTP--SISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNII 566
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I+A C+ G+ KA +M F+ PDV T L++ C YG
Sbjct: 567 IHAYCKEGDLEKAFQFHNKMVENSFK--PDVVTCNTLMNGLCLYG 609
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 151 LWDFLKEMSR-RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
L D L +S+ +G G T L+ +G++ EA RMK+ P YN
Sbjct: 225 LADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNT 284
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+++A R+G +A ++E M GF PD++TY +L + C+ G
Sbjct: 285 LVSAYARLGWIKQATDVVEAMTAFGFE--PDLWTYNVLAAGLCQAG 328
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ G + T +T L+ G + +A M F PD++ YNV+ LC+ G
Sbjct: 271 KKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKV 330
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
++A L ++ME G PDV TY L+ +
Sbjct: 331 DEAFKLKDEMEQLGI-VSPDVVTYNTLVDA 359
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
+L F+ + R P+ Y +N++++ C G A L +M+ GF PD TY L
Sbjct: 193 SLDAFHSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQ--GFGLSPDAVTYNTL 250
Query: 248 ISSYCKYGM 256
++++C+ GM
Sbjct: 251 LNAHCRKGM 259
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
++AL M++ + + +N+++ LCR G +A LE M G PDV TY
Sbjct: 367 SDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLT--PDVITYN 424
Query: 246 ILISSYCKYG 255
LI + CK G
Sbjct: 425 TLIDASCKAG 434
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 172 VTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
VTC L+ L G + +A+ F + + DV YN +I ALC+ + + A
Sbjct: 596 VTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFAD 655
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
ME+ G + PDV+TY +L+S+ + G
Sbjct: 656 MEVRGLQ--PDVFTYNVLLSALSEAG 679
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T +I +EG + +A +M + +PDV N ++N LC G KA L E
Sbjct: 561 TTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFES 620
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
G + DV TY LI + CK
Sbjct: 621 WVEKGKKV--DVITYNTLIQALCK 642
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G+ V T LI+ L ++ V+ AL F M+ +PDV+ YNV+++AL G +A
Sbjct: 625 GKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEA 684
Query: 224 RFLLEQMELPG 234
+ +L ++ G
Sbjct: 685 QKMLHKLNESG 695
>gi|356497975|ref|XP_003517831.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g26500-like [Glycine max]
Length = 494
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 17/147 (11%)
Query: 119 YHW--VERFF-------HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTT 169
Y W V RFF HF H+ V+ +M V + N+ WD L +M+RR V
Sbjct: 79 YSWRPVYRFFLYTQSLPHFTHSPVSFNKMLDVVGKSRNIDLFWDLLNDMARR---HFVND 135
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T ++ LG + + + F+ M C ++ N V+ A+C+ ++A+F++ +
Sbjct: 136 KTFVIALRTLGGARELKKCVEFFHLMNSNGCEYNLGTLNKVVEAMCKSRLVDEAKFVVFK 195
Query: 230 MELPGFRC-PPDVYTYTILISSYCKYG 255
+ C PD TY LI YC G
Sbjct: 196 LR----ECVRPDGVTYKNLIIGYCDKG 218
>gi|302761046|ref|XP_002963945.1| hypothetical protein SELMODRAFT_82351 [Selaginella moellendorffii]
gi|300167674|gb|EFJ34278.1| hypothetical protein SELMODRAFT_82351 [Selaginella moellendorffii]
Length = 376
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G V EA M + C P +Y YN +IN LC G ++AR L++M G
Sbjct: 105 LIDGLCKAGKVEEAFELSTTMVKNGCSPTLYTYNSLINGLCLQGKTDEARDFLQEMADSG 164
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ PDV TYT+LI+S + G
Sbjct: 165 YN--PDVVTYTVLINSLRRDG 183
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG T T LI L +G +EA M PDV Y V+IN+L R GNF
Sbjct: 128 NGCSPTLYTYNSLINGLCLQGKTDEARDFLQEMADSGYNPDVVTYTVLINSLRRDGNFRA 187
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A + ++M G C PD +Y L+ CK G
Sbjct: 188 AVDVFDEMVSKG-GCVPDRASYMPLLIGLCKEG 219
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
+ L + L++EA + ++++ PD Y Y ++I LC VG ++A L + M
Sbjct: 277 MSALCQRKLISEAFQVYEQLQKKGLVPDTYTYTILIGGLCDVGRTDQALSLKDTM--IQN 334
Query: 236 RCPPDVYTYTILISSYCKYGMQT 258
C PD TY IL + K G +T
Sbjct: 335 NCKPDSVTYGILRAGLLKAGRRT 357
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+EALA M + C P YN +I+ LC+ G +A L M G C P +YTY
Sbjct: 81 SEALAVLDVMAERGCIPPAIVYNQLIDGLCKAGKVEEAFELSTTMVKNG--CSPTLYTYN 138
Query: 246 ILISSYCKYG 255
LI+ C G
Sbjct: 139 SLINGLCLQG 148
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G +++A F + P++ +N ++ALC+ ++A + EQ++ G
Sbjct: 245 LISTLSKHGKLDDARKVFRELAS----PELVHFNSFMSALCQRKLISEAFQVYEQLQKKG 300
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD YTYTILI C G
Sbjct: 301 L--VPDTYTYTILIGGLCDVG 319
>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 662
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G V+EA F M + C D Y YN +I+A + G
Sbjct: 424 RFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKV 483
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILIS 249
++A L ++ME C VYTYTILIS
Sbjct: 484 DEALALFKRMEEEE-GCDQTVYTYTILIS 511
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
+T S LIK G+ G+V E L + +MK+ P +Y YN ++N L + A +
Sbjct: 185 MTVSPGNSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERV 244
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
E ME R PDV TY +I YCK G
Sbjct: 245 FEVME--SGRIKPDVVTYNTMIKGYCKAG 271
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM +G V + +I L +EG +NE A F M + +P+V Y V+I+
Sbjct: 316 QEMDEKGLQ--VPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 373
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G+ A LL +M GF PDV TY+++++ CK G
Sbjct: 374 KTGSVEDAIRLLHRMIDEGFN--PDVVTYSVVVNGLCKNG 411
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 39/133 (29%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC-- 215
M R+G+ V TV LI + G V +A+ +RM PDV Y+VV+N LC
Sbjct: 353 MIRKGSKPNVAIYTV--LIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKN 410
Query: 216 ---------------------------------RVGNFNKARFLLEQMELPGFRCPPDVY 242
+ G ++A L E+M G C D Y
Sbjct: 411 GRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKG--CTRDSY 468
Query: 243 TYTILISSYCKYG 255
Y LI ++ K+G
Sbjct: 469 CYNALIDAFTKHG 481
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+W +KE NG T T L+ L V+ A F M+ R +PDV YN +
Sbjct: 209 VWRKMKE-----NGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDVVTYNTM 263
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
I C+ G KA L ME G D TY +I +
Sbjct: 264 IKGYCKAGQTQKALEKLRVMETKGLE--ADKITYMTMIQA 301
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I+ + + +A + M + + +A+++VI LC+ G N+ + E M
Sbjct: 294 TYMTMIQACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENM 353
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + P+V YT+LI Y K G
Sbjct: 354 IRKGSK--PNVAIYTVLIDGYAKTG 376
>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
EM RG L T T LI ++G + +AL+ F M Q +PD+ AYN +I+
Sbjct: 198 LFDEMVERG--ALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDG 255
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+VG KA L + M + P+ TY ILI++YC G
Sbjct: 256 FCKVGEMEKASELWDGM--ISRKIFPNHITYGILINAYCSVG 295
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI EGL+ EA M +P ++ YN +IN LC+ G + +A+ +L +M
Sbjct: 3 TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 62
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G PD TY L+ C+
Sbjct: 63 LNIGL--SPDTTTYNTLLVESCR 83
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFR 199
VF+R ++ + ++M + G LV + + T L+ G + EAL M +
Sbjct: 115 VFSRNRHLDQALVYFRDMKKFG---LVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQG 171
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
C DV AYN ++N LC+ A L ++M G PD YT+T LI +C+ G T
Sbjct: 172 CVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERG--ALPDFYTFTTLIHGHCQDGNMT 228
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 144 RGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
R +N + EM R+G +LV+ S+ L+ V +++AL F MK+F P
Sbjct: 83 RRDNFSEAKEIFGEMLRQGVVPDLVSFSS---LMAVFSRNRHLDQALVYFRDMKKFGLVP 139
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
D Y V+++ CR GN +A + ++M G C DV Y +++ CK M T
Sbjct: 140 DNVIYTVLMHGYCRNGNMLEALKIRDEMLEQG--CVLDVIAYNTILNGLCKEKMLT 193
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ L +E ++ +A F M + PD Y + +I+ C+ GN KA L M
Sbjct: 182 ILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRN 241
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ PD+ Y LI +CK G
Sbjct: 242 IK--PDIVAYNTLIDGFCKVG 260
>gi|359490245|ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g62370-like [Vitis vinifera]
Length = 1101
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
F+ EM G+ + T LI + A+ F RM + C PD Y YN +I+
Sbjct: 256 FVGEMESEGH--FIDKMMYTSLIHGYCRGKKMRTAMRVFLRMLKMGCDPDTYTYNTLIHG 313
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++G F+K L QM G + P+V TY I+I YC+ G
Sbjct: 314 FVKLGLFDKGWILHNQMSEWGLQ--PNVVTYHIMIRRYCEEG 353
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
I L G + AL +M CRP + YN +I L + A+ L++ M+ G
Sbjct: 486 ISALCAAGKTDAALLFMDKMVSLGCRPLLSTYNSLIKCLFQERLVEDAKSLIDLMQENGI 545
Query: 236 RCPPDVYTYTILISSYCKYG 255
PD+ TY I++ +C +G
Sbjct: 546 --VPDLATYLIMVHEHCNHG 563
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI + GL ++ +M ++ +P+V Y+++I C G + A LL
Sbjct: 304 TYTYNTLIHGFVKLGLFDKGWILHNQMSEWGLQPNVVTYHIMIRRYCEEGKVDCALTLLS 363
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
M F P V++YT+LI++ K
Sbjct: 364 SMS--SFNLTPSVHSYTVLITALYK 386
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
F+ +M G L+ ST LIK L +E LV +A + M++ PD+ Y ++++
Sbjct: 501 FMDKMVSLGCRPLL--STYNSLIKCLFQERLVEDAKSLIDLMQENGIVPDLATYLIMVHE 558
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
C G+ A LL+QM G + P V Y +I
Sbjct: 559 HCNHGDLASAFGLLDQMNERGLK--PSVAIYDSIIG 592
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 4/135 (2%)
Query: 123 ERFFHFFHNE-VTCKEMGIVFARGNNVKGLWDFLKEMSR-RGNGELVTTSTVTCLIKVLG 180
E H H V +E + F RG+ K + L M + +G+ + +I
Sbjct: 757 EILLHLLHQSFVIPRENNLSFPRGSPRKIKYFALNLMQKIKGSSFMPNLYLYNGIISGFC 816
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
++ +A F M+ P+ + ++IN R G + A L +M G PD
Sbjct: 817 RANMIQDAYNHFELMQTEGVCPNQVTFTILINGHTRFGEIDHAIGLFNKMNADGL--APD 874
Query: 241 VYTYTILISSYCKYG 255
TY LI CK G
Sbjct: 875 GITYNALIKGLCKAG 889
>gi|357431250|gb|AET78302.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431254|gb|AET78304.1| At1g03560-like protein [Arabidopsis halleri]
Length = 161
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R NG + + + LI LG+ G V+EA F M + C D Y YN +I+A + G
Sbjct: 68 RFNGLAINSMFYSSLIDGLGKVGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKV 127
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISS 250
B+A L ++ME C VYTYTILIS
Sbjct: 128 BEALALFKRMEEEE-GCDQTVYTYTILISG 156
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 45/118 (38%), Gaps = 37/118 (31%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR---------------- 216
T LI + G V +A+ RM +PDV Y+VV+N LC+
Sbjct: 10 TVLIDGYAKSGSVEDAIXLLQRMIDEGFKPDVVTYSVVVNGLCKNXRVEEALDYFKTCRF 69
Query: 217 -------------------VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
VG ++A L E+M G C D Y Y LI ++ K+G
Sbjct: 70 NGLAINSMFYSSLIDGLGKVGRVDEAERLFEEMSEKG--CTRDSYCYNALIDAFTKHG 125
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+P+V Y V+I+ + G+ A LL++M GF+ PDV TY+++++ CK
Sbjct: 3 KPNVAIYTVLIDGYAKSGSVEDAIXLLQRMIDEGFK--PDVVTYSVVVNGLCK 53
>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 418
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + T T LI + G V+ A+ + +M PD+ YN +I LC+ G+ +
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A+ L+++M + G + PD TYT LI CK G
Sbjct: 295 AQDLIDEMSMKGLK--PDKITYTTLIDGNCKEG 325
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++K D + EMS +G T T LI +EG + A RM + R
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKP--DKITYTTLIDGNCKEGDLETAFEYRKRMIKENIR 343
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D AY +I+ LC+ G A +L +M G + P++ TYT++I+ +CK G
Sbjct: 344 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK--PEIGTYTMIINEFCKKG 395
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+EG + A + F + ++ RP V ++N ++N ++G+ ++ L M+ G + PD
Sbjct: 148 KEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQ--PD 205
Query: 241 VYTYTILISSYCK 253
VYTY++LI+ CK
Sbjct: 206 VYTYSVLINGLCK 218
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++E M+ +PDVY Y+V+IN LC+ + A L ++M G P+
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGL--VPNGV 242
Query: 243 TYTILISSYCKYG 255
T+T LI +CK G
Sbjct: 243 TFTTLIDGHCKNG 255
>gi|255548041|ref|XP_002515077.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545557|gb|EEF47061.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 262
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R + V G L++M +G + T T L+ L + + EA RMK C
Sbjct: 39 LCRRSQVNGAVGLLEDMLNKGF--VPDCLTYTTLLNSLCRKKKLREAYKLLCRMKVKGCN 96
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD+ YN +I+ CR G AR +L ME G C P++ +Y L++ C GM
Sbjct: 97 PDIVHYNTIISGFCREGRAMDARKVLGDMECNG--CLPNLVSYRTLVAGICDQGM 149
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++ A F +M + PD+ +Y +++ LCR N A LLE M GF PD
Sbjct: 8 GELSVAYKLFNQMFKRDVLPDIESYRILMQGLCRRSQVNGAVGLLEDMLNKGF--VPDCL 65
Query: 243 TYTILISSYCK 253
TYT L++S C+
Sbjct: 66 TYTTLLNSLCR 76
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L++ L VN A+ M PD Y ++N+LCR +A LL +M++ G
Sbjct: 35 LMQGLCRRSQVNGAVGLLEDMLNKGFVPDCLTYTTLLNSLCRKKKLREAYKLLCRMKVKG 94
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD+ Y +IS +C+ G
Sbjct: 95 --CNPDIVHYNTIISGFCREG 113
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R ++ + L M +G N ++V +T+ I EG +A M+ C
Sbjct: 74 LCRKKKLREAYKLLCRMKVKGCNPDIVHYNTI---ISGFCREGRAMDARKVLGDMECNGC 130
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++ +Y ++ +C G F++A+ LE+M L GF P L+ +C G
Sbjct: 131 LPNLVSYRTLVAGICDQGMFDEAKSYLEEMILKGF--SPHFSVSHALVKGFCIVG 183
>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W + EM NG T LI VL + +++A+A ++K +P +Y YN++I
Sbjct: 394 WQLVDEM--HNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILI 451
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ LC+ G A+ + + + + G+ + +TY I+I+ CK G+
Sbjct: 452 DGLCKGGRLKNAQDVFQDLLIKGYSV--NAWTYNIMINGLCKEGL 494
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
+M ++ G+LV T V +I L ++ V++A + M R PDV +N +I
Sbjct: 185 QMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGF 244
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C VG +A L +M L PDVYT++IL+ + CK G
Sbjct: 245 CVVGQLKEAFGLFHEMVLKNIN--PDVYTFSILVDALCKDG 283
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 148 VKGLWDFLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
V + EM ++R + ++VT +++ V+G+ + EA F+ M PDVY
Sbjct: 215 VSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQ---LKEAFGLFHEMVLKNINPDVYT 271
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
++++++ALC+ GN +A+ +L M G PDV TY+ L+ YC
Sbjct: 272 FSILVDALCKDGNITRAKNMLAVMMKQGV--IPDVVTYSSLMDGYC 315
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
MSR G + + +I LG+ +V+EAL+ F M PD YN +I+ LC++
Sbjct: 330 MSRLGVAPHAHSYNI--MINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKL 387
Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
G + A L+++M G P D+ TY LI CK
Sbjct: 388 GRISYAWQLVDEMHNNGI--PADILTYNSLIDVLCK 421
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
KEM +G T T LI L + G ++ A M D+ YN +I+
Sbjct: 361 LFKEMCCKGIAP--DTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDV 418
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ + +KA L+++++ G + P +YTY ILI CK G
Sbjct: 419 LCKNHHIDKAIALVKKIKDQGIQ--PSMYTYNILIDGLCKGG 458
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
VN+A F M + P ++YN++IN L ++ ++A L ++M G PD TY
Sbjct: 320 VNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGI--APDTVTY 377
Query: 245 TILISSYCKYG 255
LI CK G
Sbjct: 378 NSLIDGLCKLG 388
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN--FNKARFLLEQMELPGFRCPPDVY 242
VN +++F+RM + R P + +N ++ ++ + N + A L Q+EL G P +
Sbjct: 38 VNNDVSSFHRMLRMRPTPSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGI--TPTIV 95
Query: 243 TYTILISSYCKYGMQT 258
T+ IL++ YC G T
Sbjct: 96 TFNILVNCYCHLGEMT 111
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+G +K D +++ +G V T +I L +EGL NEA +M+
Sbjct: 454 LCKGGRLKNAQDVFQDLLIKGYS--VNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGII 511
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
PD Y +I AL R KA LL +M + G
Sbjct: 512 PDAVTYETIIRALFRKDENEKAEKLLREMIIRGL 545
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
TT T LI + G + EAL + D +Y +IN LC++G A +L
Sbjct: 128 TTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQML 187
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
+++E G DV Y I+I+S CK
Sbjct: 188 KKIE--GKLVNTDVVMYNIIINSLCK 211
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G AL +++ DV YN++IN+LC+ + A L +M
Sbjct: 170 LINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITK- 228
Query: 235 FRCPPDVYTYTILISSYCKYG 255
R PDV T+ LI +C G
Sbjct: 229 -RISPDVVTFNSLILGFCVVG 248
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+G + +RG ++ ++ + E+ + G V T T+ LI+ EG +NEAL F +
Sbjct: 173 IGSLCSRGK-LELAFEVMDELLKDGCKPSVITYTI--LIEATILEGRINEALELFDELVS 229
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
RPD+Y YN +I +C+ G ++A + + G C PDV +Y IL+ S+
Sbjct: 230 RGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARG--CNPDVVSYNILLRSF 281
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 149 KGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
K W+ +K+M G V T ++ LI EG V EA+ MK+ PD
Sbjct: 284 KSRWEDGERLMKDMVLSGCEPNVVTHSI--LISSFCREGRVREAVNVLEVMKEKGLTPDS 341
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y+Y+ +I+A C+ G + A LE+M G C PD+ Y ++++ CK+G
Sbjct: 342 YSYDPLISAFCKEGRLDLAIEYLEKMVSDG--CLPDIVNYNTILATLCKFG 390
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 7/119 (5%)
Query: 137 EMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196
E I+ R N L+D L +SR +L T + + I+ + +EG+ + AL +
Sbjct: 209 EATILEGRINEALELFDEL--VSRGLRPDLYTYNAI---IRGICKEGMEDRALDFVRHLS 263
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C PDV +YN+++ + + L++ M L G C P+V T++ILISS+C+ G
Sbjct: 264 ARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSG--CEPNVVTHSILISSFCREG 320
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F++ N + M RG V T + +I L G + A + + C+
Sbjct: 141 FSKANQIDSANQVFDRMRSRGFSPDVVTYNI--MIGSLCSRGKLELAFEVMDELLKDGCK 198
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
P V Y ++I A G N+A L +++ G R PD+YTY +I CK GM+
Sbjct: 199 PSVITYTILIEATILEGRINEALELFDELVSRGLR--PDLYTYNAIIRGICKEGME 252
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 9/117 (7%)
Query: 141 VFARGNNVKGLWDFLKEMSRRG--NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
+++ GN +K L + + EM R+G E+ S ++CL + +GLV+EA+ M+
Sbjct: 421 LWSCGNKIKAL-EMISEMIRKGIDPDEITYNSLISCLCR----DGLVDEAIGLLVDMEAT 475
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R +P V ++N+V+ +C+ + LL M G C P+ +Y +LI G
Sbjct: 476 RFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKG--CLPNETSYVLLIEGIAYAG 530
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ L + G + AL F ++ + C P V AYN + +AL GN KA ++ +M G
Sbjct: 382 ILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKG 441
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
PD TY LIS C+ G+
Sbjct: 442 I--DPDEITYNSLISCLCRDGL 461
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
V C ++ F N+K ++ + G+ ++ + + +I + ++ A F
Sbjct: 98 VLCTKLIKGFFNSRNLKKAMRVMEILETYGDPDVYSYNA---MISGFSKANQIDSANQVF 154
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
RM+ PDV YN++I +LC G A +++++ G C P V TYTILI +
Sbjct: 155 DRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDG--CKPSVITYTILIEA 210
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTS-TVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F R V+ + L+ M +G L S + LI +EG ++ A+ +M C
Sbjct: 316 FCREGRVREAVNVLEVMKEKG---LTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGC 372
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ YN ++ LC+ G + A + E+++ G CPP V Y + S+ G
Sbjct: 373 LPDIVNYNTILATLCKFGCADLALDVFEKLDEVG--CPPTVRAYNTMFSALWSCG 425
>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rotundifolia]
Length = 425
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + G V+ A+ + +M PD+ YN +I LC+ G+ +A L+++M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEM 302
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G + PD +TYT LI CK G
Sbjct: 303 SMKGLK--PDKFTYTTLIDGCCKEG 325
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++K D + EMS +G T T LI +EG ++ A RM Q R
Sbjct: 286 LCKKGDLKQAHDLIDEMSMKGLKP--DKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIR 343
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D AY +I+ LC+ G A +L +M G + PD+ TYT++I+ +CK G
Sbjct: 344 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK--PDIGTYTMIINEFCKKG 395
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
++G + A + F + ++ RP V +YN ++N R+G+ ++ L M G + PD
Sbjct: 148 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQ--PD 205
Query: 241 VYTYTILISSYCK 253
VYTY++LI+ CK
Sbjct: 206 VYTYSVLINGLCK 218
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PDVY Y+V+IN LC+ + A L ++M + G P+ T+T LI +CK G
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGL--VPNGVTFTTLIDGHCKNG 255
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI L +EG +A M +PD+ Y ++IN C+ G+ K LL++M+
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQR 409
Query: 233 PGFRCPPDVYTYTILISS 250
G P V TY +L++
Sbjct: 410 NGH--APSVVTYNVLMNG 425
>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Glycine max]
Length = 808
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + + L EM+ RG + +I + GLV +A T RM + C
Sbjct: 281 FCKAGEFEAVDQLLTEMAARGLN--MNVKVFNNVIDAEFKYGLVTKAAETMRRMAEMGCG 338
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ YN +IN C+ G +A LE+ + G P+ ++YT L+ +YCK G
Sbjct: 339 PDITTYNTMINFSCKGGRIKEADEFLEKAKERGLL--PNKFSYTPLMHAYCKQG 390
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEM--GIVFARGNNVK-GLWDFLKEMSRRGNGELVT 168
+++A + +H V + V + G+V + +V L+D + + + G G +V
Sbjct: 142 LDRALQLFHTVREMHNCLPTVVASNSLLNGLVKSGKVDVALQLYDKMLQ-TDDGTGAVVD 200
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T + ++K L G + E C P V YN++I+ C+ G+ A L+
Sbjct: 201 NYTTSIVVKGLCNLGKIEEGRRLVKDRWGKGCVPHVVFYNMIIDGYCKKGDLQCATRTLK 260
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
++++ G P V TY LI+ +CK G
Sbjct: 261 ELKMKGVL--PTVETYGALINGFCKAG 285
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK + G + +AL+ +MK PD Y Y+ VI+ + + + A + QM
Sbjct: 522 MIKGFCKFGKMTDALSCLNKMKNVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHK 581
Query: 235 FRCPPDVYTYTILISSYCK 253
F+ P+V TYT LI+ +CK
Sbjct: 582 FK--PNVITYTSLINGFCK 598
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+G +K +FL++ RG L + T L+ ++G +A +R+ + +PD
Sbjct: 353 KGGRIKEADEFLEKAKERG--LLPNKFSYTPLMHAYCKQGDYVKAAGMLFRIAEIGEKPD 410
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +Y I+ + G + A + E+M G PD Y +L+S CK G
Sbjct: 411 LVSYGAFIHGVVVHGEIDVALMVREKMMEKGVF--PDAQIYNVLMSGLCKNG 460
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++ AL +M + PD YNV+++ LC+ G F + LL +M PDVY
Sbjct: 425 GEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEM--LDRNVQPDVY 482
Query: 243 TYTILISSYCKYG 255
+ L+ + + G
Sbjct: 483 VFATLMDGFIRNG 495
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++ AL F +M + + +P+V Y +IN C+ + +A + M+ F P+V TY
Sbjct: 567 MSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFRGMK--SFDLVPNVVTY 624
Query: 245 TILISSYCKYG 255
T L+ + K G
Sbjct: 625 TTLVGGFFKAG 635
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++EA+ F + + P + YN +I C+ G A L +M+ PD Y
Sbjct: 495 GELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMK--NVHHAPDEY 552
Query: 243 TYTILISSYCK 253
TY+ +I Y K
Sbjct: 553 TYSTVIDGYVK 563
>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
Length = 826
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
AL F M + C+P+V + +IN CR G+ N+A + E+M GF P+V TYTIL
Sbjct: 571 ALRMFGLMLKKTCKPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGFE--PNVVTYTIL 628
Query: 248 ISSYCKYGMQT 258
I +CK G T
Sbjct: 629 IGYFCKEGKLT 639
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 4/144 (2%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+ +A E Y+ V + + C + + V+ EM R NG+ V T
Sbjct: 147 VKEALELYNTVIDVHNCVPDVFACNSLLNLLVHHGKVEIARKVYDEMVDR-NGD-VDNYT 204
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
V + K L +EG V E + C P++ YN +I+ C+ G+ +A L ++++
Sbjct: 205 VCIVTKGLCKEGKVEEGRHLIEKRWGKGCVPNIVFYNTLIDGYCKNGDIERANLLFKELK 264
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
+ GF P V TY +I+++CK G
Sbjct: 265 VKGFL--PTVKTYGAMINAFCKKG 286
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI G +N A F M+ F P+V Y ++I C+ G KA F EQM
Sbjct: 589 TFTSLINGFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGYFCKEGKLTKACFFFEQM 648
Query: 231 ELPGFRCPPDVYTYTILISS 250
+ +C P+ T+ L++
Sbjct: 649 LIN--KCIPNDATFNYLVNG 666
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ L EMS RG+ +L+ + + V GE V+ AL +M + PD YNV++
Sbjct: 398 ELLIEMSERGHTLDLIAYGALVHGLVVAGE---VDVALTVRDKMMERGILPDANIYNVLM 454
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ LC+ G F A+ LL +E+ PD + L+ + ++G
Sbjct: 455 SGLCKKGRFPAAKQLL--VEMLDQNVTPDAFVNATLVDGFIRHG 496
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + + + L EM RG V+ +I + G EA M + C
Sbjct: 281 AFCKKGKFEAVDKLLVEMKERGLA--VSLQIFNGIIDARFKHGCEIEAADAVRWMIESGC 338
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ YN +IN C G +A LLE G P+ ++YT LI ++ K G
Sbjct: 339 EPDMATYNTLINGSCSKGKVREAEELLEHAIRRGLF--PNKFSYTPLIHAFSKNG 391
>gi|357431222|gb|AET78288.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431240|gb|AET78297.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431242|gb|AET78298.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431244|gb|AET78299.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431246|gb|AET78300.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431262|gb|AET78308.1| At1g03560-like protein [Arabidopsis halleri]
Length = 161
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ V+ D+ K + R NG + + + LI LG+ G V+EA F M + C D
Sbjct: 53 KNGRVEEALDYFK--TCRFNGLAINSMFYSSLIDGLGKVGRVDEAERLFEEMSEKGCTRD 110
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
Y YN +I+A + G B+A L ++ME C VYTYTILIS
Sbjct: 111 SYCYNALIDAFTKHGKVBEALALFKRMEEEE-GCDQTVYTYTILISG 156
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 45/118 (38%), Gaps = 37/118 (31%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR---------------- 216
T LI + G V +A+ RM +PDV Y+VV+N LC+
Sbjct: 10 TVLIDGYAKSGSVEDAIRLLQRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFKTCRF 69
Query: 217 -------------------VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
VG ++A L E+M G C D Y Y LI ++ K+G
Sbjct: 70 NGLAINSMFYSSLIDGLGKVGRVDEAERLFEEMSEKG--CTRDSYCYNALIDAFTKHG 125
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P+V Y V+I+ + G+ A LL++M GF+ PDV TY+++++ CK G
Sbjct: 3 KPNVAIYTVLIDGYAKSGSVEDAIRLLQRMIDEGFK--PDVVTYSVVVNGLCKNG 55
>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
Length = 647
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T + L+ EG V+ A+ F RM C P++ +YN++I LCR G KA
Sbjct: 424 GCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKA 483
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
F E+ L R PDVYT+ + C+
Sbjct: 484 YFYFEK--LLQRRLCPDVYTFNSFLHGLCQ 511
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ V + LK+M + L TT T T L+ L + G ++EA+A +M +
Sbjct: 86 LCKAERVDDAFQLLKKMDEKKC--LPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNS 143
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P + Y VVI+ L + G +AR + +++ G C PD + YT LIS K G
Sbjct: 144 PTLKTYTVVIDGLSKAGRVEEARRIF--VDMLGNGCRPDAFVYTALISGLAKIG 195
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L++M +GN + T TV +I L + G V EA F M CRPD + Y +I+
Sbjct: 133 ILEQMVEKGNSPTLKTYTV--VIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISG 190
Query: 214 LCRVGNFNKARFLLEQMELPGFR--CPPDVYTYTILISSYCKYG 255
L ++G ++A L QM G PDV + ++I C G
Sbjct: 191 LAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASG 234
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
+LV T T L+ L + G ++ A+ M C PD+ A+ VVIN LCR ++A
Sbjct: 5 KLVDTRVCTALLNGLCKTGQLDRAMLLLDEMP---CSPDMVAFTVVINGLCREKRLDEAF 61
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCK 253
+LE+ G C PD TY + I CK
Sbjct: 62 SVLERAVRAG--CEPDYVTYNVFIDGLCK 88
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G +V+T T ++ L + G V EA ATF M++ C V Y+ +++ C GN +
Sbjct: 388 SGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSA 447
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A L +M G C P++ +Y I+I C+ G
Sbjct: 448 AVELFRRMLDRG--CEPNLVSYNIIIRGLCRAG 478
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L E ++EA + R + C PD YNV I+ LC+ + A LL++M+
Sbjct: 45 TVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDE 104
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+C P TYT L+ K G
Sbjct: 105 K--KCLPTTVTYTALVDGLLKAG 125
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L + EA+A +M + RC P ++ Y +++ ++G ++A L++ G
Sbjct: 260 LVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERG 319
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F PD TYT +I CK G
Sbjct: 320 F--IPDAVTYTSIIDGLCKLG 338
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 50/130 (38%), Gaps = 36/130 (27%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC----RPDVYAYNVVINALCRV 217
GNG T LI L + G ++EAL +M + C PDV +N+VI LC
Sbjct: 174 GNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCAS 233
Query: 218 GNFNKA----RFLLEQMELPGF----------------------------RCPPDVYTYT 245
GN A L + ++L F RC P ++TYT
Sbjct: 234 GNLEDALAYFDELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYT 293
Query: 246 ILISSYCKYG 255
L+ + K G
Sbjct: 294 SLVDGFLKLG 303
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
F+K+MS R T T T L+ + G ++EAL + PD Y +I+
Sbjct: 276 FVKKMSERRC--FPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDG 333
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LC++G + +M G+ PD TY LI + K M
Sbjct: 334 LCKLGRVEEGCERFHEMRNRGYE--PDAVTYAALIDGFMKAKM 374
>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Vitis vinifera]
Length = 665
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
CLI + G ++EAL+ +++ PDV+ Y+++I LC V +A LL++M+
Sbjct: 338 CLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKK 397
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
GF P+ TY LI YCK G
Sbjct: 398 GFL--PNAVTYNTLIDGYCKEG 417
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
+VK + +EM G+G L T LI L + + A M F P+++
Sbjct: 278 HVKKALELYQEM--LGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFV 335
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
YN +I+ C+ GN ++A L ++E PDV+TY+ILI C
Sbjct: 336 YNCLIDGYCKAGNLSEALSLHSEIE--KHEILPDVFTYSILIKGLC 379
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LI+ L E ++EA + F M+ P++Y YN +++ C++ + KA L
Sbjct: 227 TVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELY 286
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++M G P+V T+ ILI CK
Sbjct: 287 QEMLGDGLL--PNVVTFGILIDGLCK 310
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LIK L + EA MK+ P+ YN +I+ C+ GN KA + QM
Sbjct: 370 TYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQM 429
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P++ T++ LI YCK G
Sbjct: 430 TEKGIE--PNIITFSTLIDGYCKAG 452
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+EM ++G L T LI +EG + +A+ +M + P++ ++ +I+
Sbjct: 390 LLQEMKKKGF--LPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDG 447
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ G A L +M + G PDV YT LI + K G
Sbjct: 448 YCKAGKMEAAMGLYTEMVIKGLL--PDVVAYTALIDGHFKDG 487
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVN 186
F N VT + + + N++ + +M+ +G ++T ST LI + G +
Sbjct: 399 FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFST---LIDGYCKAGKME 455
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
A+ + M PDV AY +I+ + GN +A L ++M+ G P+V+T +
Sbjct: 456 AAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLH--PNVFTLSC 513
Query: 247 LISSYCKYG 255
LI CK G
Sbjct: 514 LIDGLCKDG 522
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI E GLV EAL +Y+M P + A N+V++ L + G F+ + M G
Sbjct: 132 LIIAFSEMGLVEEALWVYYKMDVL---PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARG 188
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+V TY LI C+ G
Sbjct: 189 --ASPNVVTYGTLIDGCCRQG 207
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY---------- 193
+ N K + KEM G V T ++CLI L ++G +++A+ F
Sbjct: 485 KDGNTKEAFRLHKEMQEAGLHPNVFT--LSCLIDGLCKDGRISDAIKLFLAKTGTDTTGS 542
Query: 194 ---RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+ + C P+ Y +I LC G KA M G R PDV+T ++I
Sbjct: 543 KTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLR--PDVFTCIVIIQG 600
Query: 251 Y 251
+
Sbjct: 601 H 601
>gi|255554390|ref|XP_002518234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542581|gb|EEF44120.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 932
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F++ +V+ FL M NG T T +I +G ++EA A F ++ +
Sbjct: 300 FSKEGSVEKSVGFLHHM--LANGSEPNLVTYTAIILGFCRKGKIDEAFAIFKLVENLGIK 357
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D + Y ++++ C G+F++A L+E+ME G P + Y ILI+S CK G
Sbjct: 358 LDEFIYAILVDGFCLKGDFDRAYQLIEEMEKKGI--TPTIVAYNILINSLCKAG 409
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 156 KEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
KEM ++G +++ T+ T LI +EG V +++ + M P++ Y +I
Sbjct: 279 KEMVKKG----ISSDTIGYTILIDGFSKEGSVEKSVGFLHHMLANGSEPNLVTYTAIILG 334
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
CR G ++A + + +E G + D + Y IL+ +C G
Sbjct: 335 FCRKGKIDEAFAIFKLVENLGIKL--DEFIYAILVDGFCLKG 374
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L ++ +++EA F M + PDVY YN +++ C ++A+ L M
Sbjct: 152 TFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIM 211
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G C P+V +Y ILI+ +CK G
Sbjct: 212 DRKG--CAPNVRSYNILINGHCKSG 234
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 7/145 (4%)
Query: 112 INKATE-FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS 170
+N+AT F VER + N+VT + + + W + M+ +G V T
Sbjct: 131 VNEATSLFKQMVER--NVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTY 188
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
L+ ++EA F M + C P+V +YN++IN C+ G ++A+ LL +M
Sbjct: 189 NA--LVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEM 246
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
PD++TY+ L+ +C+ G
Sbjct: 247 SHKSL--TPDIFTYSTLMRGFCQVG 269
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L+ L + + +A+ F M + PDV Y+ +IN LC++GN A LL
Sbjct: 9 TLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLL 68
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++ME G C P+V Y +I S CK
Sbjct: 69 KKMEEKG--CKPNVVAYNTIIDSLCK 92
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ LKEM G L T + ++ L + G ++EA M++ + P+++ Y ++I
Sbjct: 276 ELLKEMCSYG--LLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIE 333
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
+C G AR L + + G + P V TYT++IS K G+
Sbjct: 334 GMCTFGKLEAARELFSNLFVKGIQ--PTVVTYTVMISGLLKGGLS 376
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 9/114 (7%)
Query: 143 ARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R + KGL L EMS + ++ T ST L++ + G EA M +
Sbjct: 234 GRIDEAKGL---LAEMSHKSLTPDIFTYST---LMRGFCQVGRPQEAQELLKEMCSYGLL 287
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++ Y++V++ LC+ G+ ++A LL+ M+ + P+++ YTILI C +G
Sbjct: 288 PNLITYSIVLDGLCKHGHLDEAFELLKAMQES--KIEPNIFIYTILIEGMCTFG 339
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
DF EM + G V T + ++ G VNEA + F +M + P+ + ++I
Sbjct: 100 MDFFSEMVKEGIPPDVFT--YSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILI 157
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ LC+ ++A + E M G PDVYTY L+ YC
Sbjct: 158 DGLCKKRMISEAWLVFETMTEKGLE--PDVYTYNALVDGYC 196
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 145 GNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
GN L LK+M +G +V +T+ I L ++ LV EA+ F M + PD
Sbjct: 59 GNTTMALQ-LLKKMEEKGCKPNVVAYNTI---IDSLCKDRLVTEAMDFFSEMVKEGIPPD 114
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
V+ Y+ +++ C +G N+A L +QM P+ T+TILI CK M
Sbjct: 115 VFTYSSILHGFCNLGRVNEATSLFKQM--VERNVIPNKVTFTILIDGLCKKRM 165
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
M R+G V + + LI + G ++EA M PD++ Y+ ++ C+V
Sbjct: 211 MDRKGCAPNVRSYNI--LINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQV 268
Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
G +A+ LL++M G P++ TY+I++ CK+G
Sbjct: 269 GRPQEAQELLKEMCSYGLL--PNLITYSIVLDGLCKHG 304
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T +I L + GL NEA F M C P+ YNV+I R G+ A L+
Sbjct: 359 TVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLI 418
Query: 228 EQMELPGFRCPPDVYTYTIL 247
E+M GF D T+ +L
Sbjct: 419 EEMVGKGF--SADSSTFRML 436
>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 472
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 168 TTSTVTCLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
T +++ LIK L +G V+ L F M + C PD Y Y +I+ LCR G ++A+ L
Sbjct: 155 TVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKL 214
Query: 227 LEQMELPGFRCPPDVYTYTILISSYC 252
+M C P V TYT LI+ C
Sbjct: 215 FTEMVEKD--CAPTVVTYTSLINGLC 238
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
C+ G V A GL FL EM +RG + T LI L G ++EA F
Sbjct: 167 CRNDGTVDA------GLKIFL-EMPKRGCDP--DSYTYGTLISGLCRFGRIDEAKKLFTE 217
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M + C P V Y +IN LC N ++A LE+M+ G P+V+TY+ L+ CK
Sbjct: 218 MVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIE--PNVFTYSSLMDGLCKD 275
Query: 255 G 255
G
Sbjct: 276 G 276
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ +L EE +N A + M++ P V + NV+I ALCR A + +E+P
Sbjct: 127 VLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKI-FLEMPK 185
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD YTY LIS C++G
Sbjct: 186 RGCDPDSYTYGTLISGLCRFG 206
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI L V+EA+ MK P+V+ Y+ +++ LC+ G +A L
Sbjct: 226 TVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELF 285
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
E M G C P++ TYT LI+ CK
Sbjct: 286 EMMMARG--CRPNMVTYTTLITGLCK 309
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
NV +L+EM +G V T + L+ L ++G +A+ F M CRP++
Sbjct: 242 NVDEAMRYLEEMKSKGIEPNVFT--YSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVT 299
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
Y +I LC+ +A LL++M L G + PD Y +IS +C
Sbjct: 300 YTTLITGLCKEQKIQEAVELLDRMNLQGLK--PDAGLYGKVISGFC 343
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G +++ + F M+R +VT +T LI L +E + EA+ RM +PD
Sbjct: 276 GRSLQAMELFEMMMARGCRPNMVTYTT---LITGLCKEQKIQEAVELLDRMNLQGLKPDA 332
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
Y VI+ C + F +A L++M L G P+ T+ I + +
Sbjct: 333 GLYGKVISGFCAISKFREAANFLDEMILGGI--TPNRLTWNIHVKT 376
>gi|359488082|ref|XP_002266772.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g08610-like [Vitis vinifera]
Length = 498
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 150 GLWDFLKEMSRRGN--GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G WD + E+ N + T T LI L + GL++ A+ F +M C PD+ Y
Sbjct: 263 GYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITY 322
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N ++ ALC+ G ++A LL L RC P + TY I+I K G
Sbjct: 323 NTLLAALCKEGMVDEALHLLHS--LNDTRCSPGLITYNIVIDGLAKKG 368
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T L+ L G +E M P V YN++IN LC+ G ++A +
Sbjct: 249 TVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFD 308
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
QM C PD+ TY L+++ CK GM
Sbjct: 309 QM--VSHNCLPDIITYNTLLAALCKEGM 334
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L +EG+V+EAL + + RC P + YN+VI+ L + G KA L +M
Sbjct: 321 TYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMELYGEM 380
Query: 231 ELPGFRCPPDVYTYTIL 247
GF PD T+ L
Sbjct: 381 IERGF--APDDITHRTL 395
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ YN+++ LC+ G A LL++M L G CPPD TY ++ +G
Sbjct: 107 PDIITYNMLVGGLCKKGLLKTAIELLDEMSLSG--CPPDAITYNTILRCMFDHG 158
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALA 190
E+ CK G V A + L++M+ G ++VT ++ L+ ++G +
Sbjct: 187 ELVCKHCGTVQA--------MEVLEDMAIEGCYPDIVTYNS---LVNYTCKQGKYEDTAL 235
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
Y + P+ YN ++++LC G +++ +L M PP V TY ILI+
Sbjct: 236 IIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQ--PPTVVTYNILING 293
Query: 251 YCKYGM 256
CKYG+
Sbjct: 294 LCKYGL 299
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
F K+ R+G + T TV LI+++ + +A+ M C PD+ YN ++N
Sbjct: 166 FWKDQLRKGCPAYLITYTV--LIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSLVNY 223
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C+ G + ++ + G P+ TY L+ S C +G
Sbjct: 224 TCKQGKYEDTALIIYNLLSHGM--GPNTVTYNTLLHSLCTHG 263
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L ++GL+ A+ M C PD YN ++ + G F++A +
Sbjct: 111 TYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHGGFDQAIGFWKDQ 170
Query: 231 ELPGFRCPPDVYTYTILISSYCKY 254
G CP + TYT+LI CK+
Sbjct: 171 LRKG--CPAYLITYTVLIELVCKH 192
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 148 VKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
+K + L EMS G + +T +T+ ++ + + G ++A+ + + C +
Sbjct: 125 LKTAIELLDEMSLSGCPPDAITYNTI---LRCMFDHGGFDQAIGFWKDQLRKGCPAYLIT 181
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y V+I +C+ +A +LE M + G C PD+ TY L++ CK G
Sbjct: 182 YTVLIELVCKHCGTVQAMEVLEDMAIEG--CYPDIVTYNSLVNYTCKQG 228
>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R V + D ++M + G + T + LI G G V+ A+ F ++ C
Sbjct: 439 ALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNI--LISSYGRAGRVDSAVKIFEELENSNC 496
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+PDV +YN +IN L + G+ ++A ++M+ G PDV TY+ LI + K
Sbjct: 497 QPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLN--PDVVTYSTLIECFGK 547
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++ L G + EA+ R + D YN V AL R+ + L E+M+ G
Sbjct: 401 MLESLCSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDG 460
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PPD++TY ILISSY + G
Sbjct: 461 --PPPDIFTYNILISSYGRAG 479
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
A+ V + ++M RR T T T +I++ G+ G +E+LA F M +
Sbjct: 232 ALAKDQKVDKAYKVFEDMKRRHCEP--DTFTYTIMIRMTGKAGKTDESLALFQAMLEKGF 289
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
++ AYN +I AL + +KA L +M G C P+ +TY++L++
Sbjct: 290 TLNLIAYNTMIEALAKGRMADKAVLLFSKMVENG--CQPNEFTYSVLLN 336
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
++ R + + +TT T+ + LG V+ + +MKQ PD++ YN++I++
Sbjct: 416 DLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSY 475
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R G + A + E++E C PDV +Y LI+ K G
Sbjct: 476 GRAGRVDSAVKIFEELE--NSNCQPDVISYNSLINCLGKNG 514
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 156 KEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
KEM +G N ++VT ST LI+ G+ V A + F M C P++ YN++++ L
Sbjct: 524 KEMQEKGLNPDVVTYST---LIECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILLDCL 580
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
R G +A L +++ G PD TY +L
Sbjct: 581 ERSGRTAEAVDLYAKLKQQGL--TPDSITYAVL 611
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI LG+ G V+EA F M++ PDV Y+ +I + A L ++M G
Sbjct: 506 LINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEG 565
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P++ TY IL+ + G
Sbjct: 566 --CSPNLVTYNILLDCLERSG 584
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
++A + M + D++A+N++++AL + +KA + E M+ C PD +TYT
Sbjct: 205 DKAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKRR--HCEPDTFTYT 262
Query: 246 ILISSYCKYG 255
I+I K G
Sbjct: 263 IMIRMTGKAG 272
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L ++ V++A F MK+ C PD + Y ++I + G +++ L + M G
Sbjct: 229 LLDALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKG 288
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
F ++ Y +I + K M
Sbjct: 289 FTL--NLIAYNTMIEALAKGRM 308
>gi|297852926|ref|XP_002894344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297340186|gb|EFH70603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 650
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
+ + D ++M + G + T + LI G G V+EA+ F +++ C+PD+ +Y
Sbjct: 458 ISHIHDLFEKMKKDGPSPDIFTYNI--LISSFGRVGEVDEAINIFEELERSDCKPDIISY 515
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N +IN L + G+ ++A ++M+ G PDV TY+ L+ + K
Sbjct: 516 NSLINCLGKNGDVDEAHVRFKEMQEKGLN--PDVVTYSTLMECFGK 559
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T + LG+ ++ F +MK+ PD++ YN++I++ RVG ++A
Sbjct: 437 GVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISSFGRVGEVDEA 496
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ E++E C PD+ +Y LI+ K G
Sbjct: 497 INIFEELERSD--CKPDIISYNSLINCLGKNG 526
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI LG+ G V+EA F M++ PDV Y+ ++ + A L E+M + G
Sbjct: 518 LINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKG 577
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P++ TY IL+ K G
Sbjct: 578 --CQPNIVTYNILLDCLEKSG 596
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 156 KEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
KEM +G N ++VT ST L++ G+ V A + F M C+P++ YN++++ L
Sbjct: 536 KEMQEKGLNPDVVTYST---LMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCL 592
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
+ G +A L +M+ G PD TYT+L
Sbjct: 593 EKSGRTAEAVDLYTKMKQQGL--TPDSITYTVL 623
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++ L G EA+ ++ + D YN V +AL ++ + L E+M+ G
Sbjct: 413 MLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDG 472
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD++TY ILISS+ + G
Sbjct: 473 --PSPDIFTYNILISSFGRVG 491
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
L++VL + +V++A+ F RM + CRP+ Y Y++V+N L G + ++E
Sbjct: 311 LMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLVLNLLVAEGQLVRLDGIVE 364
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N T K + + R + +D E+ RRG G + L+ L ++ +A
Sbjct: 202 NSFTYKCLLQAYLRSRDSSKAFDVYCEI-RRG-GHKLDIFAYNMLLDALAKD---EKACQ 256
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
F MK+ CR D Y+Y ++I + R+G +++A L +M G
Sbjct: 257 VFEDMKKRHCRRDEYSYTIMIRTMGRIGKYDEAVGLFNEMITEGL 301
>gi|356510096|ref|XP_003523776.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g18475-like [Glycine max]
Length = 640
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R VK ++ +EM R + + T LI G + A MK RC
Sbjct: 373 LCRNGRVKEAFELFEEMVSRDHI-VPDPLTYNVLINEFCRRGKPDRARNVIEFMKSNRCY 431
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+VY Y+ +++ LC+VG A+ +L +M+ G + PD TYT LI+ C+ G
Sbjct: 432 PNVYNYSALVDGLCKVGKLEDAKGVLAEMKGSGLK--PDTVTYTSLINFLCRNG 483
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L EM +G+G T T T LI L G + EA+ +K+ C+ D +NV++ L
Sbjct: 457 LAEM--KGSGLKPDTVTYTSLINFLCRNGQIGEAMGLLKEIKENTCQADTVTFNVILGGL 514
Query: 215 CRVGNFNKARFLLEQMELPG 234
CR F +A +LE++ G
Sbjct: 515 CREDRFEEALDMLEKLPQQG 534
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ L+ L + G + +A MK +PD Y +IN LCR G +A LL+ E+
Sbjct: 438 SALVDGLCKVGKLEDAKGVLAEMKGSGLKPDTVTYTSLINFLCRNGQIGEAMGLLK--EI 495
Query: 233 PGFRCPPDVYTYTILISSYCK 253
C D T+ +++ C+
Sbjct: 496 KENTCQADTVTFNVILGGLCR 516
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+++ Y+ ++ LCR G +A L E+M + PD TY +LI+ +C+ G
Sbjct: 361 PNLFTYSTFMDGLCRNGRVKEAFELFEEM-VSRDHIVPDPLTYNVLINEFCRRG 413
>gi|302769109|ref|XP_002967974.1| hypothetical protein SELMODRAFT_88078 [Selaginella moellendorffii]
gi|300164712|gb|EFJ31321.1| hypothetical protein SELMODRAFT_88078 [Selaginella moellendorffii]
Length = 376
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G V EA M + C P +Y YN +IN LC G ++AR L++M G
Sbjct: 105 LIDGLCKAGKVEEAFELSTTMVKNGCSPTLYTYNSLINGLCLQGKTDEARDFLQEMADSG 164
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ PDV TYT+LI+S + G
Sbjct: 165 YN--PDVVTYTVLINSLRRDG 183
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG T T LI L +G +EA M PDV Y V+IN+L R GNF
Sbjct: 128 NGCSPTLYTYNSLINGLCLQGKTDEARDFLQEMADSGYNPDVVTYTVLINSLRRDGNFKA 187
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A + ++M G C PD +Y L+ CK G
Sbjct: 188 AVDVFDEMVSKG-GCVPDRASYMPLLIGLCKEG 219
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+EALA M + C P YN +I+ LC+ G +A L M G C P +YTY
Sbjct: 81 SEALAVLDVMAERGCIPPAIVYNQLIDGLCKAGKVEEAFELSTTMVKNG--CSPTLYTYN 138
Query: 246 ILISSYCKYG 255
LI+ C G
Sbjct: 139 SLINGLCLQG 148
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
+ L + L++EA + ++++ PD Y Y ++I LC VG ++A L + M
Sbjct: 277 MSALCQRKLISEAFQVYEQLQKKGLVPDTYTYTILIGGLCDVGRTDQALSLKDTM--IQN 334
Query: 236 RCPPDVYTYTILISSYCKYG 255
C PD TY IL + K G
Sbjct: 335 NCKPDSVTYGILRAGLLKAG 354
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI + G +++A F + P++ +N ++ALC+ ++A + EQ++ G
Sbjct: 245 LISTFSKHGKLDDARKVFRELAS----PELVHFNSFMSALCQRKLISEAFQVYEQLQKKG 300
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD YTYTILI C G
Sbjct: 301 L--VPDTYTYTILIGGLCDVG 319
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVI 211
DFL+EM+ G V T TV LI L +G A+ F M + C PD +Y ++
Sbjct: 155 DFLQEMADSGYNPDVVTYTV--LINSLRRDGNFKAAVDVFDEMVSKGGCVPDRASYMPLL 212
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ G + LE+ R + + +LIS++ K+G
Sbjct: 213 IGLCKEGCVQLVQEFLEKHRA---RLDLGSFFHNLLISTFSKHG 253
>gi|226530981|ref|NP_001141613.1| uncharacterized protein LOC100273731 [Zea mays]
gi|194705268|gb|ACF86718.1| unknown [Zea mays]
gi|414870824|tpg|DAA49381.1| TPA: hypothetical protein ZEAMMB73_722490 [Zea mays]
Length = 504
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM + NG T L+ VLG+ AL M CRP+V + +I+
Sbjct: 306 LLDEMGK--NGLTPDLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCRPNVLHFTNLIDG 363
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L R GN R+ ++M G C PDV YT++I+SY G
Sbjct: 364 LGRAGNLEACRYFFDEMMKKG--CDPDVVCYTVMIASYVAAG 403
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 4/136 (2%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A +F+ W + + H+ + VFA VK +W +EM+ +G V++ T
Sbjct: 162 AYKFFIWAGQQEGYQHSTSMYNLVMKVFAECGEVKAMWRLFEEMAAKG--LPVSSRTFHL 219
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI + GL + F R F RP A+N ++ L + ++ ++ E+M L G
Sbjct: 220 LICASVKVGLRRRLVERFIRSSTFNYRPFRNAFNAILYTLLTIEQYSLIEWVHEKMILEG 279
Query: 235 FRCPPDVYTYTILISS 250
+ PDV TY +++ +
Sbjct: 280 Y--SPDVLTYNVVLRA 293
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R N++ F EM ++G V TV +I G EA F M
Sbjct: 364 LGRAGNLEACRYFFDEMMKKGCDPDVVCYTV--MIASYVAAGEFEEAQRFFDDMLMRGQL 421
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
P+VY YN +I LC VG F+KA +L+ M+ G C P+ Y+ L+ G T
Sbjct: 422 PNVYTYNSMIQGLCAVGEFDKAFTMLKDMDSHG--CTPNFSVYSSLVRRLRNAGKDT 476
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI LG G + F M + C PDV Y V+I + G F +A+ + M +
Sbjct: 358 TNLIDGLGRAGNLEACRYFFDEMMKKGCDPDVVCYTVMIASYVAAGEFEEAQRFFDDMLM 417
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G P+VYTY +I C G
Sbjct: 418 RG--QLPNVYTYNSMIQGLCAVG 438
>gi|147799110|emb|CAN63706.1| hypothetical protein VITISV_013107 [Vitis vinifera]
Length = 390
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 16/145 (11%)
Query: 119 YHWVERFFHFFHNE---VTCKEMGIVFARGNNVKGL-----WDFLKEMSRRG--NGELVT 168
+++ R ++ N+ V K I+ + KGL F++EM + G G +
Sbjct: 153 HNYAIRILNYMLNDGYAVDAKMCSIILSSLCEQKGLSGDEVLRFMEEMRKLGFYPGRVDC 212
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
+ + L+K EG+V +AL F +MK +PD +Y +++N + G++ KA L +
Sbjct: 213 NNVIXFLVK----EGMVMDALGVFDQMKTDGIKPDTVSYTMILNGVTADGDYEKADDLFD 268
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
+M + G PD++ Y + I+S CK
Sbjct: 269 EMLVLG--VVPDIHAYNVYINSLCK 291
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 4/130 (3%)
Query: 124 RFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG 183
R F+ V C + + V +M + +G T + T ++ + +G
Sbjct: 201 RKLGFYPGRVDCNNVIXFLVKEGMVMDALGVFDQM--KTDGIKPDTVSYTMILNGVTADG 258
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
+A F M PD++AYNV IN+LC+ N + +L M G C PD
Sbjct: 259 DYEKADDLFDEMLVLGVVPDIHAYNVYINSLCKQNNIEEGVRMLASMRELG--CKPDYVX 316
Query: 244 YTILISSYCK 253
Y +L+ K
Sbjct: 317 YNMLLEGMSK 326
>gi|22330179|ref|NP_683419.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
gi|75216707|sp|Q9ZU27.1|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g51965, mitochondrial; Flags: Precursor
gi|4220445|gb|AAD12672.1| Similar to gi|3004555 F19F24.14 salt inducible protein homolog from
Arabidopsis thaliana BAC gb|AC003673 [Arabidopsis
thaliana]
gi|332194619|gb|AEE32740.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
Length = 650
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
+ + D ++M + G + T + LI G G V+EA+ F +++ C+PD+ +Y
Sbjct: 458 ISHIHDLFEKMKKDGPSPDIFTYNI--LIASFGRVGEVDEAINIFEELERSDCKPDIISY 515
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N +IN L + G+ ++A ++M+ G PDV TY+ L+ + K
Sbjct: 516 NSLINCLGKNGDVDEAHVRFKEMQEKGLN--PDVVTYSTLMECFGK 559
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T + LG+ ++ F +MK+ PD++ YN++I + RVG ++A
Sbjct: 437 GVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEA 496
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ E++E C PD+ +Y LI+ K G
Sbjct: 497 INIFEELERSD--CKPDIISYNSLINCLGKNG 526
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI LG+ G V+EA F M++ PDV Y+ ++ + A L E+M + G
Sbjct: 518 LINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKG 577
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P++ TY IL+ K G
Sbjct: 578 --CQPNIVTYNILLDCLEKNG 596
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 156 KEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
KEM +G N ++VT ST L++ G+ V A + F M C+P++ YN++++ L
Sbjct: 536 KEMQEKGLNPDVVTYST---LMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCL 592
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
+ G +A L +M+ G PD TYT+L
Sbjct: 593 EKNGRTAEAVDLYSKMKQQGL--TPDSITYTVL 623
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++ L G EA+ ++ + D YN V +AL ++ + L E+M+ G
Sbjct: 413 MLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDG 472
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD++TY ILI+S+ + G
Sbjct: 473 --PSPDIFTYNILIASFGRVG 491
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
L++VL + +V++A+ F RM + CRP+ Y Y++++N L G + ++E
Sbjct: 311 LMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVE 364
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I+ +G G +EA+ F M +V YN ++ L + +KA + +M
Sbjct: 272 TYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRM 331
Query: 231 ELPGFRCPPDVYTYTILIS 249
G C P+ YTY++L++
Sbjct: 332 VETG--CRPNEYTYSLLLN 348
>gi|15233137|ref|NP_191711.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183498|sp|Q9M316.1|PP292_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g61520, mitochondrial; Flags: Precursor
gi|6850843|emb|CAB71082.1| putative protein [Arabidopsis thaliana]
gi|332646696|gb|AEE80217.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 766
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRC------RPDVYAYNVVINALCRVGNFNKAR 224
T+ LI L + V+EAL F +M+ R + D +N +I+ LC+VG +A
Sbjct: 331 TLGILINTLCKSRRVDEALEVFEKMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAE 390
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL +M+L RC P+ TY LI YC+ G
Sbjct: 391 ELLVRMKLEE-RCAPNAVTYNCLIDGYCRAG 420
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK-QFRC 200
F + + + + +++M R +G T +T +I G ++EAL F M +
Sbjct: 591 FGKHKDFESVERMMEQM--REDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKV 648
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
P+ YN++INA ++GNF +A L E+M++ R P+V TY L
Sbjct: 649 NPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVR--PNVETYNAL 693
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 160 RRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMK-QFRCRPDVYAYNVVINALCR 216
R +G ++ ++ LI L + G + EA RMK + RC P+ YN +I+ CR
Sbjct: 359 RTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCAPNAVTYNCLIDGYCR 418
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
G A+ ++ +M+ + P+V T ++ C++
Sbjct: 419 AGKLETAKEVVSRMKEDEIK--PNVVTVNTIVGGMCRH 454
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+N A+ F M++ + +V Y +I+A C V N KA + E+M G C PD Y
Sbjct: 457 LNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAG--CSPDAKIY 514
Query: 245 TILISSYCK 253
LIS C+
Sbjct: 515 YALISGLCQ 523
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T CLI G + A RMK+ +P+V N ++ +CR N A M
Sbjct: 408 TYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDM 467
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
E G + +V TY LI + C
Sbjct: 468 EKEGVK--GNVVTYMTLIHACC 487
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
F +M + G G +VT T LI V +A+ + +M + C PD Y +I+
Sbjct: 463 FFMDMEKEGVKGNVVTYMT---LIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALIS 519
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
LC+V + A ++E+++ GF D+ Y +LI +C
Sbjct: 520 GLCQVRRDHDAIRVVEKLKEGGFSL--DLLAYNMLIGLFC 557
>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 550
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 26/167 (15%)
Query: 105 PQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGN--NVKGLWDFLKEMSRRG 162
P VTL I + + H H +G+V RG N L +K + G
Sbjct: 111 PSIVTLSI--------LINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCING 162
Query: 163 --------------NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
G L+ T LI L + GL EA ++M+ RP+V YN
Sbjct: 163 EVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYN 222
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++++ LC+ G +AR L ++ G PDV+TYT LI +C G
Sbjct: 223 MIVDGLCKDGLVTEARDLYS--DVVGRGIDPDVFTYTCLIHGFCGLG 267
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T TCLI G E M +VY YN++I+ALC+ G KA + M
Sbjct: 255 TYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLM 314
Query: 231 ELPGFRCPPDVYTYTILISSYCKY 254
G R PD+ T+ L+S YC Y
Sbjct: 315 IERGQR--PDLVTFNTLMSGYCLY 336
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W+ + G V T + ++ L + LV++A+ F M + P+V +YN++I
Sbjct: 413 WELFSAIHDGGPSPNVITYNI--MLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILI 470
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N C+ ++A L E+M PD TY LI CK G
Sbjct: 471 NGYCKSKRIDEAMNLFEEMHRRNL--VPDSVTYNCLIDGLCKSG 512
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
E+ + G++V + V ++ L ++GLV EA + + PDV+ Y +I+
Sbjct: 204 ELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGF 263
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
C +G + + LL M +VYTY ILI + CK GM
Sbjct: 264 CGLGQWREVTRLLCDMVDRNVNL--NVYTYNILIDALCKKGM 303
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP-DVYT 243
++EA+ F M + PD YN +I+ LC+ G + A L M G PP DV T
Sbjct: 479 IDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGG---PPVDVIT 535
Query: 244 YTILISSYCK 253
Y IL ++ K
Sbjct: 536 YNILFDAFSK 545
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EAL+ F +M + P++ Y+ +I+ LC+ G + A L + G P+V TY
Sbjct: 374 IDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGG--PSPNVITY 431
Query: 245 TILISSYCK 253
I++ + CK
Sbjct: 432 NIMLDALCK 440
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+A F R+ P V +N+++ ++ ++ ++ A L +QM L G P + T
Sbjct: 59 IDDAVALFTRLITMHPLPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGI--TPSIVTL 116
Query: 245 TILISSYCKYG 255
+ILI+ YC G
Sbjct: 117 SILINCYCHLG 127
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V EA F + PDV++YN++I C+ ++A L +M + P++ TY
Sbjct: 339 VVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYK--KLAPNIVTY 396
Query: 245 TILISSYCKYG 255
+ LI CK G
Sbjct: 397 SSLIDGLCKSG 407
>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
Length = 561
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMK-QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L+ L + G V EA F M +C P+V Y VIN LC+ G ++A LL+ M
Sbjct: 106 LVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNET 165
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G C P+V TY++L+ CK G
Sbjct: 166 G--CCPNVITYSVLVEGLCKAG 185
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L+++ V+ A M + C PDV YN VI LCR + A+ LL
Sbjct: 240 TVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALL 299
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
+QM RC PDV TY+ +I CK
Sbjct: 300 KQM--VAARCVPDVITYSTIIDGLCK 323
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + ++ L EM RG V +IK L + G +AL F + +C
Sbjct: 40 LCKAGKLDQAYELLDEMRDRGIPPGVAVHNG--VIKGLCKAGRFGDALGYFKTVAGTKCT 97
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ +N++++AL + G +A + E M +C P+V TYT +I+ CK G
Sbjct: 98 PDIITFNILVDALVKSGRVEEAFQIFESMHTSS-QCLPNVVTYTTVINGLCKDG 150
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I L ++G ++ A+ M + C P+V Y+V++ LC+ G +K LL++M
Sbjct: 138 TYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEM 197
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
GF+ PDV Y L++ CK
Sbjct: 198 TRRGFQ--PDVIMYNTLLNGLCK 218
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 145 GNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
G KG + L+EM+RRG +++ +T L+ L + ++EAL M + C P
Sbjct: 185 GRTDKG-FTLLQEMTRRGFQPDVIMYNT---LLNGLCKSRRLDEALELVQLMIRSGCYPT 240
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
V YN ++ CR ++A L++ M G CPPDV Y +I+ C+
Sbjct: 241 VVTYNSLMELFCRSKQVDRAFRLIQVMSERG--CPPDVINYNTVIAGLCR 288
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ C + +L G +A+ F ++ RC P+ + Y +I+ LC+ G ++A LL++M
Sbjct: 1 MNCALNLLVRAGQHGQAVQLF---REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
G PP V + +I CK G
Sbjct: 58 DRGI--PPGVAVHNGVIKGLCKAG 79
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + EA+ M C PD +Y +I LCRV +A L + +E GF +V
Sbjct: 470 GRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGF--AMEVG 527
Query: 243 TYTILISSYCK 253
Y +L++ CK
Sbjct: 528 VYNVLVNELCK 538
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L++ L + G ++ M + +PDV YN ++N LC+ ++A L++ M
Sbjct: 173 TYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLM 232
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C P V TY L+ +C+
Sbjct: 233 IRSG--CYPTVVTYNSLMELFCR 253
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 175 LIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
LI L + G V++A+ F M + FR P V YN V++ LC VG +A ++E M
Sbjct: 428 LIDGLSKGGEVDKAVRVFELMVESFR--PGVATYNSVLDGLCGVGRIEEAVRMVEGMIHK 485
Query: 234 GFRCPPDVYTYTILISSYCK 253
C PD +Y LI C+
Sbjct: 486 --ECFPDGASYGALIRGLCR 503
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
MKQ C P+ Y VVI LCR +A LL +M PD+ +++++I S CK
Sbjct: 343 MKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRM--IDSEVVPDLSSFSMVIGSLCK 399
>gi|357148528|ref|XP_003574800.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial-like [Brachypodium distachyon]
Length = 464
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
LW +M R G ++ +T + +I G L +A+ F R+ F C YN +
Sbjct: 136 LWTQASDM--RALGLPLSPATFSAVISSYGHSRLPEQAVEVFNRLPHFGCPQTTEVYNAL 193
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ALC GNF A LL +M G PD T++ L+ ++C G
Sbjct: 194 LDALCSNGNFAGAYKLLRRMARKG--VAPDRATFSTLVDAWCASG 236
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FL +M+ RG V + L+ L G + EA A R + PDV +N + A
Sbjct: 244 FLDDMASRGFRPPVRGRDL--LVDGLVRAGRLEEAKAFAVRFTKEGVLPDVATFNSLAQA 301
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC G+ A LL G C PD+ TY +++ + K G
Sbjct: 302 LCDAGDVKFAVGLLADASSRGL-C-PDISTYKVMLPAVAKAG 341
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 4/110 (3%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N G + L+ M+R+G +T + L+ G + EA A M RP V
Sbjct: 201 GNFAGAYKLLRRMARKGVAP--DRATFSTLVDAWCASGKLREAQAFLDDMASRGFRPPVR 258
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+++++ L R G +A+ + G PDV T+ L + C G
Sbjct: 259 GRDLLVDGLVRAGRLEEAKAFAVRFTKEGVL--PDVATFNSLAQALCDAG 306
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 4/123 (3%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
T + +VK L + S RG ++T V ++ + + G + EA F
Sbjct: 293 ATFNSLAQALCDAGDVKFAVGLLADASSRGLCPDISTYKV--MLPAVAKAGQIEEAFRLF 350
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
Y + RP Y ++ ALC+ G F A M+ G PP+ Y +L+
Sbjct: 351 YAAVEDGHRPFPSLYAAIVKALCKAGRFGDAFAFFGDMKSKGH--PPNRPVYVMLVKMCV 408
Query: 253 KYG 255
+ G
Sbjct: 409 RGG 411
>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
Length = 561
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMK-QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L+ L + G V EA F M +C P+V Y VIN LC+ G ++A LL+ M
Sbjct: 106 LVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNET 165
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G C P+V TY++L+ CK G
Sbjct: 166 G--CCPNVITYSVLVEGLCKAG 185
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L+++ V+ A M + C PDV YN VI LCR + A+ LL
Sbjct: 240 TVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALL 299
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
+QM RC PDV TY+ +I CK
Sbjct: 300 KQM--VAARCVPDVITYSTIIDGLCK 323
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + ++ L EM RG V +I+ L + G +AL F + +C
Sbjct: 40 LCKAGKLDQAYELLDEMRDRGIPPGVAVHNG--VIRGLCKAGRFGDALGYFKTVAGTKCT 97
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ +N++++AL + G +A + E M +C P+V TYT +I+ CK G
Sbjct: 98 PDIITFNILVDALVKSGRVEEAFQIFESMHTSS-QCLPNVVTYTTVINGLCKDG 150
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I L ++G ++ A+ M + C P+V Y+V++ LC+ G +K LL++M
Sbjct: 138 TYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEM 197
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
GF+ PDV Y L++ CK
Sbjct: 198 TRRGFQ--PDVIMYNTLLNGLCK 218
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 145 GNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
G KG + L+EM+RRG +++ +T L+ L + ++EAL M + C P
Sbjct: 185 GRTDKG-FTLLQEMTRRGFQPDVIMYNT---LLNGLCKSRRLDEALELVQLMIRSGCYPT 240
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
V YN ++ CR ++A L++ M G CPPDV Y +I+ C+
Sbjct: 241 VVTYNSLMELFCRSKQVDRAFRLIQVMSERG--CPPDVINYNTVIAGLCR 288
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+ C + +L G +A+ F ++ RC P+ + Y +I+ LC+ G ++A LL++M
Sbjct: 1 MNCALNLLVRAGQHGQAVQLF---REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
G PP V + +I CK G
Sbjct: 58 DRGI--PPGVAVHNGVIRGLCKAG 79
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L++ L + G ++ M + +PDV YN ++N LC+ ++A L++ M
Sbjct: 173 TYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLM 232
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C P V TY L+ +C+
Sbjct: 233 IRSG--CYPTVVTYNSLMELFCR 253
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 175 LIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
LI L + G V++A+ F M + FR P V YN V++ LC VG +A ++E M
Sbjct: 428 LIDGLSKGGEVDKAVRVFELMVESFR--PGVATYNSVLDGLCGVGRIEEAVRMVEGMIHK 485
Query: 234 GFRCPPDVYTYTILISSYCK 253
C PD +Y LI C+
Sbjct: 486 --ECFPDGASYGALIRGLCR 503
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + EA+ M C PD +Y +I LCRV +A L + +E GF +V
Sbjct: 470 GRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGF--AMEVG 527
Query: 243 TYTILISSYCK 253
Y +L++ CK
Sbjct: 528 VYNVLVNELCK 538
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
MKQ C P+ Y VVI LCR +A LL +M PD+ +++++I S CK
Sbjct: 343 MKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRM--IDSEVVPDLSSFSMVIGSLCK 399
>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
Length = 821
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKE--MSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188
+E TC ++ A G +GL D KE + + G T T L++V G+ G+ +EA
Sbjct: 279 DEFTCST--VISACGR--EGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIYSEA 334
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
L+ M+ C PD YN ++ A R G + + L++ M G + P+ TYT +I
Sbjct: 335 LSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIK--PNAVTYTTMI 392
Query: 249 SSY 251
++Y
Sbjct: 393 NAY 395
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
Query: 146 NNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
N + GL D EM +G G + T STV I G EGL++EA F +K P
Sbjct: 262 NKILGLLD---EMRSKGLGFDEFTCSTV---ISACGREGLLDEAKEFFVGLKSQGYAPGT 315
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN ++ + G +++A ++++ME CPPD TY L+++Y + G
Sbjct: 316 VTYNALLQVFGKAGIYSEALSIMKEME--DNNCPPDAVTYNELVAAYVRAG 364
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN-GELVTTST 171
++A E H ++ + VT + ++ARG + L+E+ G+ +L++ +T
Sbjct: 647 DRAHEIMHLIQEC-GLQPDLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNT 705
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
V IK +GL++EAL T M RP + YN + G F + +L M
Sbjct: 706 V---IKGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFVGGYAAKGMFAEIDEVLSYM- 761
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
C P+ TY I++ YCK
Sbjct: 762 -TKHDCRPNELTYKIVVDGYCK 782
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
T LI G G +A + M + P V YN ++NAL R G++ A +++
Sbjct: 491 DTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKD 550
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M+ GF+ P +Y+++++SY K G
Sbjct: 551 MKNKGFK--PSETSYSLILNSYAKGG 574
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG T T +I G V++AL+ + +MK+ C P+V YN ++ L + +
Sbjct: 379 NGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEE 438
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
+L M++ G C P+ T+ ++S GM
Sbjct: 439 MMKILCDMKVDG--CAPNRITWNTMLSMCGNKGMH 471
>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 418
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
CKE ++ ++ L+D + + NG + T T LI + G V+ A+ + +
Sbjct: 217 CKE-----SKMDDANALFDEMLD-----NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQ 266
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M PD+ YN +I LC+ G+ +A+ L+++M + G + PD TYT LI CK
Sbjct: 267 MLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK--PDKITYTTLIDGNCKE 324
Query: 255 G 255
G
Sbjct: 325 G 325
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++K D + EMS +G T T LI +EG + A RM + R
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKP--DKITYTTLIDGNCKEGDLETAFEYRKRMIKENIR 343
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D AY +I+ LC+ G A +L +M G + P++ TYT++I+ +CK G
Sbjct: 344 LDDVAYTALISXLCQEGRSVDAEKMLREMLSVGLK--PEIGTYTMIINEFCKKG 395
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + A + F + ++ RP V ++N ++N ++G+ ++ L M+ G + PDVY
Sbjct: 150 GEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQ--PDVY 207
Query: 243 TYTILISSYCK 253
TY++LI+ CK
Sbjct: 208 TYSVLINGLCK 218
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++E M+ +PDVY Y+V+IN LC+ + A L ++M G P+
Sbjct: 185 GDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGL--VPNGV 242
Query: 243 TYTILISSYCKYG 255
T+T LI +CK G
Sbjct: 243 TFTTLIDGHCKNG 255
>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
Length = 586
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T LI+ L EG + E L F +M +P+V Y +IN LC+VG+ + A LL
Sbjct: 139 ATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRS 198
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
ME C PDV YT +I S CK
Sbjct: 199 MEQG--NCQPDVVVYTSIIDSLCK 220
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+A ++ PD+ Y +VI+ +CR G AR L + G P+V+TY
Sbjct: 434 LDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLH--PNVWTY 491
Query: 245 TILISSYCKYGM 256
TI+I+ C+ G+
Sbjct: 492 TIMINGLCQQGL 503
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 149 KGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
K ++ F +EM R+ EL+ T T + L+ L G + +A+A F+ M PD +Y
Sbjct: 366 KAMYLF-EEMCRK---ELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSY 421
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++++ LC+ ++A LL+ +E G PD+ YTI+I C+ G
Sbjct: 422 CILLDYLCKNRRLDEAIALLKAIE--GSNMDPDIQIYTIVIDGMCRAG 467
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G T LI L + G + A+ M+Q C+PDV Y +I++LC+
Sbjct: 166 GEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVT 225
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+A L +M G P ++TY LI + C
Sbjct: 226 QAFNLFSEMIHQGIS--PSIFTYNSLIHALC 254
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ L +EG V EA M + P+V YN +++ C ++A + + M G
Sbjct: 284 VVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKG 343
Query: 235 FRCPPDVYTYTILISSYCK 253
F PDV +Y+ LI+ YCK
Sbjct: 344 F--APDVVSYSTLINGYCK 360
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++AL++F RM P + + ++ ++ ++ +++ L QM+ F PP++YT
Sbjct: 49 LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMD--SFGIPPNIYTL 106
Query: 245 TILISSYC 252
ILI+S+C
Sbjct: 107 NILINSFC 114
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 18/127 (14%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+ CKE ++ A D + M +RG V T L E ++EA+
Sbjct: 286 DALCKEGKVMEAH--------DVVDMMIKRGVEPNVVTYNALMDGHCLRSE--MDEAVKV 335
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM---ELPGFRCPPDVYTYTILI 248
F M PDV +Y+ +IN C++ KA +L E+M EL P+ TY+ L+
Sbjct: 336 FDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKEL-----IPNTVTYSTLM 390
Query: 249 SSYCKYG 255
C G
Sbjct: 391 HGLCHVG 397
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A + ++ + +P++ +N +I LC G + L ++M GF+ P+V TY L
Sbjct: 122 AFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQ--PNVVTYGTL 179
Query: 248 ISSYCKYG 255
I+ CK G
Sbjct: 180 INGLCKVG 187
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L ++ V +A F M P ++ YN +I+ALC + + LL +M
Sbjct: 212 TSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEM-- 269
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+ P+V ++ ++ + CK G
Sbjct: 270 VNSKIMPNVVIFSTVVDALCKEG 292
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ D +S +G V T T+ +I L ++GL+ EA F MK+
Sbjct: 463 MCRAGELEAARDLFSNLSSKGLHPNVWTYTI--MINGLCQQGLLAEASKLFGEMKRKGYS 520
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
P+ YN++ R + LL++M GF DV T T+L+ G+
Sbjct: 521 PNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFS--ADVSTSTVLVEMLSDDGLD 574
>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
Length = 439
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 7/145 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++KA E +H +E+ F T + + + + + L+E S + + TS
Sbjct: 86 LDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQLLEESSCCSSDVIAITSV 145
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
K V+EA M + + +PD+ A+NV+I+ C+ G +A +LE +
Sbjct: 146 ARGFCKA----QRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETL 201
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P+ TYT LI +CK G
Sbjct: 202 VSMG--CVPNAVTYTTLIDGFCKSG 224
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 124 RFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG 183
R H N VT + + + ++ ++ +K+M R T T T L+ L ++G
Sbjct: 239 RDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLR--ADTFTYTTLMDGLCKQG 296
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
+E F M + C P V Y +++A C+ G+ A+ ++ M G PPDV T
Sbjct: 297 RTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGI--PPDVTT 354
Query: 244 YTILI 248
YT+L+
Sbjct: 355 YTVLL 359
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + N+ K +S R + T LI L + + A +MK R
Sbjct: 220 FCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLR 279
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D + Y +++ LC+ G ++ + E+M G C P V TYT L+ ++CK G
Sbjct: 280 ADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREG--CNPSVVTYTTLVHAHCKAG 331
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L + G +++A+A F + +C P V N++IN C + +KA L +ME
Sbjct: 44 LLASLCQAGKMDQAMAIF---RGIQCSPSVITLNILINGFCELQLLDKALELFHEME-KN 99
Query: 235 FRCPPDVYTYTILISSYCK 253
F P+ TYT +I YCK
Sbjct: 100 FALVPEATTYTAIIKCYCK 118
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L + G + EA+ + +M + C P++ N+++ +LC+ G ++A +
Sbjct: 5 TFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAIFR-- 62
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G +C P V T ILI+ +C+
Sbjct: 63 ---GIQCSPSVITLNILINGFCE 82
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNG--ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F + V + L +M + + ++V + + I + G V EA +
Sbjct: 149 FCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVI---IHGFCKAGRVREAYEMLETLVSMG 205
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C P+ Y +I+ C+ GN ++A L + + P+V T+ LIS CK
Sbjct: 206 CVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCK 259
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ +++ ++ M +G VTT TV L++ L E G V A F ++ + RC P
Sbjct: 329 KAGSLQDAQQVIRSMVAKGIPPDVTTYTV--LLEGLFENGKVRTATEFFEKILRERCPPC 386
Query: 204 VYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y+ ++ C+ ++A ++ +E ++ R PD T +L+ CK G
Sbjct: 387 AVVYSALVRGCCKAALVDEAVKYYVEMLDR---RLAPDPATCKLLVEMLCKRG 436
>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 577
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T LI+ L EG + E L F +M +P+V Y +IN LC+VG+ + A LL
Sbjct: 130 ATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRS 189
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
ME C PDV YT +I S CK
Sbjct: 190 MEQG--NCQPDVVVYTSIIDSLCK 211
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+A ++ PD+ Y +VI+ +CR G AR L + G P+V+TY
Sbjct: 425 LDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLH--PNVWTY 482
Query: 245 TILISSYCKYGM 256
TI+I+ C+ G+
Sbjct: 483 TIMINGLCQQGL 494
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 149 KGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
K ++ F +EM R+ EL+ T T + L+ L G + +A+A F+ M PD +Y
Sbjct: 357 KAMYLF-EEMCRK---ELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSY 412
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++++ LC+ ++A LL+ +E G PD+ YTI+I C+ G
Sbjct: 413 CILLDYLCKNRRLDEAIALLKAIE--GSNMDPDIQIYTIVIDGMCRAG 458
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G T LI L + G + A+ M+Q C+PDV Y +I++LC+
Sbjct: 157 GEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVT 216
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+A L +M G P ++TY LI + C
Sbjct: 217 QAFNLFSEMIHQGIS--PSIFTYNSLIHALC 245
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ L +EG V EA M + P+V YN +++ C ++A + + M G
Sbjct: 275 VVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKG 334
Query: 235 FRCPPDVYTYTILISSYCK 253
F PDV +Y+ LI+ YCK
Sbjct: 335 F--APDVVSYSTLINGYCK 351
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++AL++F RM P + + ++ ++ ++ +++ L QM+ F PP++YT
Sbjct: 40 LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMD--SFGIPPNIYTL 97
Query: 245 TILISSYC 252
ILI+S+C
Sbjct: 98 NILINSFC 105
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 18/127 (14%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+ CKE ++ A D + M +RG V T L E ++EA+
Sbjct: 277 DALCKEGKVMEAH--------DVVDMMIKRGVEPNVVTYNALMDGHCLRSE--MDEAVKV 326
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM---ELPGFRCPPDVYTYTILI 248
F M PDV +Y+ +IN C++ KA +L E+M EL P+ TY+ L+
Sbjct: 327 FDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKEL-----IPNTVTYSTLM 381
Query: 249 SSYCKYG 255
C G
Sbjct: 382 HGLCHVG 388
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A + ++ + +P++ +N +I LC G + L ++M GF+ P+V TY L
Sbjct: 113 AFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQ--PNVVTYGTL 170
Query: 248 ISSYCKYG 255
I+ CK G
Sbjct: 171 INGLCKVG 178
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L ++ V +A F M P ++ YN +I+ALC + + LL +M
Sbjct: 203 TSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEM-- 260
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+ P+V ++ ++ + CK G
Sbjct: 261 VNSKIMPNVVIFSTVVDALCKEG 283
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ D +S +G V T T+ +I L ++GL+ EA F MK+
Sbjct: 454 MCRAGELEAARDLFSNLSSKGLHPNVWTYTI--MINGLCQQGLLAEASKLFGEMKRKGYS 511
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
P+ YN++ R + LL++M GF DV T T+L+ G+
Sbjct: 512 PNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFS--ADVSTSTVLVEMLSDDGLD 565
>gi|224113637|ref|XP_002316529.1| predicted protein [Populus trichocarpa]
gi|222859594|gb|EEE97141.1| predicted protein [Populus trichocarpa]
Length = 678
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N + W KEM G E V T V ++ L ++ + EAL+ FYR+ + P+V
Sbjct: 217 NEIHRFWIVYKEMVSYGYMENVNTFNV--VVHALCKDCKLQEALSVFYRILKSGIWPNVV 274
Query: 206 AYNVVINALCRVGNFNKARFLLEQME-LPGFRCPPDVYTYTILISSYCKYG 255
+N++++ C++G+ + A L+ +ME + P+ TY LI +CK G
Sbjct: 275 TFNMMVDGACKMGDMDLALKLVRKMEIMSAGSIKPNSVTYNSLIDGFCKIG 325
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L + L G + AL ++ + D +++N++IN LC+ NF AR LL +M
Sbjct: 418 TCSILTRGLCRNGYITTALKFLNQVLENNLIEDAFSHNILINFLCKSNNFAAARQLLARM 477
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G PDV T+ LI +CK G
Sbjct: 478 YVRGL--VPDVVTFGTLIDGHCKEG 500
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ NN L M RG ++VT T LI +EG + A+ + +M +
Sbjct: 461 LCKSNNFAAARQLLARMYVRGLVPDVVTFGT---LIDGHCKEGNIESAVQVYDKMVKGEE 517
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P++ YN +IN LC+ G + AR L++ ++ G D TY LI+ Y G
Sbjct: 518 KPNLLVYNSIINGLCKDGLVDVARSLVDVLQRMGL---VDTITYNTLINGYFNCG 569
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 11/115 (9%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRC 200
R + KGL L EMS + +T TVT L+K ++G +A M+ +
Sbjct: 271 GRIDEAKGL---LAEMSHKA----LTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGL 323
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ Y++V++ LC+ G+ ++A LL+ M+ + P+++ YTILI C +G
Sbjct: 324 LPDLMTYSIVLDGLCKQGHLDEAFELLKAMQES--KIEPNIFIYTILIQGMCNFG 376
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L+EM R G L T + ++ L ++G ++EA M++ + P+++ Y ++I
Sbjct: 314 LLEEM--RSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQG 371
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+C G AR L + + G + PDV TYT++IS K G+
Sbjct: 372 MCNFGKLEAARELFSNLFVKGIQ--PDVVTYTVMISGLLKGGL 412
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ L + + +A+ F M + PDV Y+ +IN LC++G+ A LL++M
Sbjct: 49 TFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKM 108
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E G C P+V Y+ +I S CK
Sbjct: 109 EEKG--CKPNVVVYSTIIDSLCK 129
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R N L+ K+M R + T T L+ L +EG++ EA F M +
Sbjct: 165 LGRSNEATSLF---KQMVERN--VMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVE 219
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V YN +++ C ++A+ L M G C P V +Y ILI +CK G
Sbjct: 220 PNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKG--CAPSVRSYNILIKGHCKSG 271
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA F M + C P V +YN++I C+ G ++A+ LL +M PD TY
Sbjct: 238 MDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKAL--TPDTVTY 295
Query: 245 TILISSYCKYG 255
+ L+ +C+ G
Sbjct: 296 STLMKGFCQDG 306
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
M R+G V + + LIK + G ++EA M PD Y+ ++ C+
Sbjct: 248 MVRKGCAPSVRSYNI--LIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQD 305
Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
G A+ LLE+M G PD+ TY+I++ CK G
Sbjct: 306 GRPQDAQKLLEEMRSYGLL--PDLMTYSIVLDGLCKQG 341
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 152 WDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+FL EM RG + +VT S++ LG NEA + F +M + PD +N++
Sbjct: 137 MEFLSEMVNRGISPNVVTYSSILHGFCNLGRS---NEATSLFKQMVERNVMPDTVTFNIL 193
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
++ L + G +A+ + E M G P+V TY L+ YC
Sbjct: 194 VDGLSKEGMILEAQCVFETMIEKGVE--PNVNTYNALMDGYC 233
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
EM + G +++T ST+ I L + G A+ +M++ C+P+V Y+ +I+
Sbjct: 69 LFDEMVKMGYEPDVITYSTI---INGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIID 125
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+LC+ +A L +M G P+V TY+ ++ +C G
Sbjct: 126 SLCKDKLITEAMEFLSEMVNRGI--SPNVVTYSSILHGFCNLG 166
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
LK+M +G +V ST+ I L ++ L+ EA+ M P+V Y+ +++
Sbjct: 104 LLKKMEEKGCKPNVVVYSTI---IDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILH 160
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
C +G N+A L +QM PD T+ IL+ K GM
Sbjct: 161 GFCNLGRSNEATSLFKQMVERNVM--PDTVTFNILVDGLSKEGM 202
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I L + GL NEA F M C P+ YNV+I R G+ + A L+E+M
Sbjct: 399 TYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEM 458
Query: 231 ELPGFRCPPDVYTYTIL 247
GF D T+ +L
Sbjct: 459 VGRGF--SADSSTFQML 473
>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 6/139 (4%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F+ W E+ H+ H+ + A+ + +WD +K M + +V T
Sbjct: 39 AYRFFEWAEKQRHYNHSVKAFHTVIDSLAKIRQYQLMWDVVKVMKSK---RMVNVETFCI 95
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++ V EA+ TF M ++ P++ A+N +++ALC+ N KA+ + + ++
Sbjct: 96 IMRKYARAQKVEEAVYTFNIMDKYDVPPNLAAFNGLLSALCKSKNVRKAQEIFDSIK--- 152
Query: 235 FRCPPDVYTYTILISSYCK 253
R PD TY+IL+ + K
Sbjct: 153 DRFVPDSKTYSILLEGWGK 171
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
+ T + L++ G++ + +A F M CRPD+ Y ++++ LC+ G ++A ++
Sbjct: 159 SKTYSILLEGWGKDPNLPKAREIFREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVN 218
Query: 229 QMELPGFRCPPDVYTYTILISSY 251
+M+ C P + Y++L+ +Y
Sbjct: 219 EMD--STVCKPTPFIYSVLVHTY 239
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ L+ G E + +A++TF M+ PDV YN +I A C+ +L +M+
Sbjct: 233 SVLVHTYGIENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDC 292
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G P+ T+ I++SS G
Sbjct: 293 KGV--TPNSRTFNIILSSLIGRG 313
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T +IK+ E + +AL + MK R P ++ + V+IN LC G+ +A LLE
Sbjct: 333 ADTYTMMIKMFCERDELKKALKVWKYMKLKRFMPSMHTFQVLINGLCEKGDVTQACVLLE 392
Query: 229 QMELPGFR 236
+M G R
Sbjct: 393 EMIEKGIR 400
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
NG T ++ VL + G V+EAL M C+P + Y+V+++
Sbjct: 187 SNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGIENRIE 246
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
A +ME G PDV Y LI ++CK
Sbjct: 247 DAVSTFLEMENNGIE--PDVAVYNALIGAFCK 276
>gi|357499031|ref|XP_003619804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494819|gb|AES76022.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 344
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 142 FARGNNVKGLWDFLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+G V +D EM ++R + +++T S + ++G+ +N+ + F +M
Sbjct: 60 MCKGKLVNDAFDLYSEMVAKRISPDVITYSALISGFCIVGK---LNDTIGLFNKMTAENI 116
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
PDVY +N+ ++A C+ G +A+++L M G + P V TY L++ YC
Sbjct: 117 NPDVYTFNISVDAFCKEGRVKEAKYVLSMMMKHGIK--PSVVTYNTLMNGYC 166
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 157 EMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
++ RR +G+LV + + + +I + + LVN+A + M R PDV Y+ +I+
Sbjct: 36 QLLRRVDGKLVQPNVIMYSTIIDGMCKGKLVNDAFDLYSEMVAKRISPDVITYSALISGF 95
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C VG N L +M PDVYT+ I + ++CK G
Sbjct: 96 CIVGKLNDTIGLFNKMTAENIN--PDVYTFNISVDAFCKEG 134
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
RPD+Y Y + I LC+ G AR + E + + G+ DVYTYT++I +C G+
Sbjct: 239 RPDMYTYTIFIKGLCQSGKLKDARKVFEDLLVKGYNL--DVYTYTVMIQGFCDKGL 292
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T IK L + G + +A F + DVY Y V+I C G F +A LL +M
Sbjct: 244 TYTIFIKGLCQSGKLKDARKVFEDLLVKGYNLDVYTYTVMIQGFCDKGLFKEALALLSKM 303
Query: 231 ELPGFRCPPDVYTYTILISS 250
E G C PD Y I+I S
Sbjct: 304 EDNG--CIPDAKIYEIVILS 321
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G AL R+ +P+V Y+ +I+ +C+ N A L +M R PDV
Sbjct: 29 GQTRAALQLLRRVDGKLVQPNVIMYSTIIDGMCKGKLVNDAFDLYSEM--VAKRISPDVI 86
Query: 243 TYTILISSYCKYG 255
TY+ LIS +C G
Sbjct: 87 TYSALISGFCIVG 99
>gi|449524124|ref|XP_004169073.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11900-like [Cucumis sativus]
Length = 363
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T ++ ++G G V+E L F MK+ PD+ +YN +IN+L +VG + + +M
Sbjct: 216 TYNIILDMVGRAGRVDEILHIFVSMKEEGIAPDIVSYNTLINSLRKVGRLDISVIYFREM 275
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PD+ TYT LI SY ++G
Sbjct: 276 VAMGIE--PDLLTYTALIESYGRFG 298
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 12/130 (9%)
Query: 133 VTCKEMG----IVFARG---NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLV 185
++CK + + FAR N L + +KE+ + + + + + I E +
Sbjct: 139 LSCKSLSSASYMSFARAFTKTNDSKLLECVKEIIEITSQKCIVINRI---IFAFSERREI 195
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
++A F +MK C PD+Y YN++++ + R G ++ + M+ G PD+ +Y
Sbjct: 196 DKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSMKEEGI--APDIVSYN 253
Query: 246 ILISSYCKYG 255
LI+S K G
Sbjct: 254 TLINSLRKVG 263
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ R V + M G ++V+ +T LI L + G ++ ++ F M
Sbjct: 223 MVGRAGRVDEILHIFVSMKEEGIAPDIVSYNT---LINSLRKVGRLDISVIYFREMVAMG 279
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
PD+ Y +I + R GN +A LL++M+L R P Y Y LI
Sbjct: 280 IEPDLLTYTALIESYGRFGNLEEALTLLKEMKLNNIR--PSSYIYRSLI 326
>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
Length = 568
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 113 NKATEFYHWVERFFH-------FFHNEVT---CKEMGIVFARGNNVKGLWDFLKEMSRRG 162
+ TE Y VE F +N + CKE NVK + + MSRRG
Sbjct: 306 GRGTEAYELVEEMGGKGLALDVFTYNILINGHCKE--------GNVKKALEIFENMSRRG 357
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
T T T LI L ++G V E F + RPD+ YN +IN+ GN ++
Sbjct: 358 --VRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDR 415
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A ++ +ME R PD TY L+ C G
Sbjct: 416 AFEIMGEMEKK--RIAPDDVTYNTLMRGLCLLG 446
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G +T +T L+ L +G EA M DV+ YN++IN C+ GN KA
Sbjct: 287 GVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKA 346
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ E M G R V TYT LI + K G
Sbjct: 347 LEIFENMSRRGVRAT--VVTYTSLIYALSKKG 376
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
++G ++ AL RM + V YN++++AL G +A L+E+M G D
Sbjct: 269 DQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAL--D 326
Query: 241 VYTYTILISSYCKYG 255
V+TY ILI+ +CK G
Sbjct: 327 VFTYNILINGHCKEG 341
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 195 MKQFRCR----PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
M++ R R P+ Y Y VI+ C+VG ++A + ++M G P+ Y LI
Sbjct: 208 MREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKG-EVKPEAVMYNALIGG 266
Query: 251 YCKYG 255
YC G
Sbjct: 267 YCDQG 271
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ EM++RG +LVT +T LI +G V +AL M P + YN +I
Sbjct: 454 LIDEMTKRGIQPDLVTYNT---LISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 510
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
LC+ G + A ++++M G PD TY LI
Sbjct: 511 GLCKNGQGDDAENMVKEMVENGI--TPDDSTYISLI 544
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 146 NNVKGLWDFLKEMSR-RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
N+ ++ + EM + R + VT +T L++ L G V+EA M + +PD+
Sbjct: 411 GNIDRAFEIMGEMEKKRIAPDDVTYNT---LMRGLCLLGRVDEARKLIDEMTKRGIQPDL 467
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN +I+ G+ A + +M GF P + TY LI CK G
Sbjct: 468 VTYNTLISGYSMKGDVKDALRIRNEMMNKGFN--PTLLTYNALIQGLCKNG 516
>gi|356574119|ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like [Glycine max]
Length = 942
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 5/139 (3%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F+HW F H T + + +R + L LK++S T +
Sbjct: 85 AHSFFHWASNQ-GFRHTCYTYNSIASILSRSHQTSPLKTLLKQISDSAPCSF-TPGALGF 142
Query: 175 LIKVLGEEGLVNEALATFYRMK-QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
LI+ LG GL EA F M+ + C P+ Y YN ++ AL + G + LE+M+
Sbjct: 143 LIRCLGHAGLAREAHHLFDEMRLKGLCVPNDYCYNCLLEALSKSGEVDLIEARLEEMK-- 200
Query: 234 GFRCPPDVYTYTILISSYC 252
GF D +T T L+ +YC
Sbjct: 201 GFGWEFDKFTLTPLLQAYC 219
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
C + + F++ +V ++ ++ M G+G + T LI +EG V+ AL F
Sbjct: 245 CSMLALSFSKWGDVDKAFELVERM--EGHGMRLNEKTFCVLIHGFVKEGRVDRALQLFDI 302
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M + P V ++V+I LCR G+ ++A LL +M+ F PDV +T LIS++
Sbjct: 303 MCRVGFTPPVSLFDVLIGGLCRNGDSHRALSLLSEMK--EFGVTPDVGIFTKLISAFPDR 360
Query: 255 GM 256
G+
Sbjct: 361 GV 362
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
++ + +I L + ++ AL+ F MKQF RP V YN +IN+LC ++R LL +
Sbjct: 433 ASFSIVINGLLKNDQLDLALSLFNDMKQFVDRPSVLIYNNLINSLCDSNRLEESRELLRE 492
Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
M+ G P +TY + CK
Sbjct: 493 MKESGVE--PTHFTYNSIYGCLCK 514
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+N AL F + PDV A N+++ LC+ +A LL+++ + GF P V TY
Sbjct: 588 LNRALQLFSDLYSRGHCPDVVASNILMRGLCKAYRVREAEKLLDEIVVKGFF--PSVVTY 645
Query: 245 TILISSYCKYG 255
+LI S+CK G
Sbjct: 646 NLLIDSWCKNG 656
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186
HF +N + G + R +V G D LK M G+ + ST+ L+K L + G+
Sbjct: 502 HFTYNSI----YGCLCKR-KDVLGAIDMLKGMRACGHEPWIKNSTL--LVKELCDHGMAI 554
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
EA M Q PD+ +Y+ I L ++ N+A L + G C PDV I
Sbjct: 555 EACNFLDSMVQQGFLPDIVSYSAAIGGLIQIQELNRALQLFSDLYSRG-HC-PDVVASNI 612
Query: 247 LISSYCK 253
L+ CK
Sbjct: 613 LMRGLCK 619
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P V YN++I++ C+ G+ +KA LL +M G P+V TY+ L+ +C+
Sbjct: 640 PSVVTYNLLIDSWCKNGSVDKAMALLSRMS--GEDREPNVITYSTLVDGFCR 689
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI + G V++A+A RM P+V Y+ +++ CR + A + +M
Sbjct: 644 TYNLLIDSWCKNGSVDKAMALLSRMSGEDREPNVITYSTLVDGFCRAERPDDALLVWNEM 703
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E G C P+ + LI CK
Sbjct: 704 ERKG--CFPNQIAFMALIYGLCK 724
>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74750-like [Glycine max]
Length = 873
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 24/223 (10%)
Query: 48 VADVLKSIPRFFFQSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQK 107
+ +V+ +I F + PR + P+ +RI++ +D + L GP A +
Sbjct: 283 MVEVVPTIKESFNKHPRDLKMSA---RTAPMNRRIVEVVSDILRQ--LRWGPTAEKALYN 337
Query: 108 VTLGINK---------------ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLW 152
+ ++ A F+ W+ R F H+ T M + R +
Sbjct: 338 LNFSMDAYQANQILKQLQDPSVALGFFDWLRRQPGFRHDGHTYTTMVGILGRARRFDSIS 397
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
L++M + G V T LI G + EAL F M++ C PD Y +I+
Sbjct: 398 KLLEQMVKDGCQPNVVTYNR--LIHCYGCANYLKEALNVFNEMQEVGCEPDRVTYCTLID 455
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G + A + ++M+ G PD +TY+++I+ K G
Sbjct: 456 IHAKAGFIDVAMSMYKRMQEAGLS--PDTFTYSVIINCLGKAG 496
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T + +I LG+ G + A F M + C P++ YN++I + N+ A L
Sbjct: 482 TFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYH 541
Query: 229 QMELPGFRCPPDVYTYTILISS--YCKY 254
M+ GF+ PD TY+I++ + +C Y
Sbjct: 542 DMQNAGFQ--PDKVTYSIVMEALGHCGY 567
>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
L++ +KE+ R N + T L+K EG +A+ F M+ C PD+Y YN V
Sbjct: 193 LFEEMKELGRSPN-----SWTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYTYNTV 247
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
I+ R G F +A + +M+ G C PD TY ++ +Y K+
Sbjct: 248 IDMCGRGGLFAEAEGVFLEMQRKG--CTPDRVTYNTMLDAYSKW 289
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
+L T +TV I + G GL EA F M++ C PD YN +++A + +AR
Sbjct: 240 DLYTYNTV---IDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRAR 296
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL+ M+ G C PD++TY IL+ + K G
Sbjct: 297 DLLKTMKRAG--CTPDLWTYNILLDAAGKAG 325
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ T +I LG G ++EA+ F MK+ P+ + YN ++ A R G + KA L M
Sbjct: 173 SYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGM 232
Query: 231 ELPGFRCPPDVYTYTILIS 249
E G C PD+YTY +I
Sbjct: 233 EDEG--CIPDLYTYNTVID 249
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
D LK M R G + T + L+ G+ G +EA+ F+ +K P++ +++ +IN
Sbjct: 297 DLLKTMKRAGCTPDLWTYNI--LLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSALIN 354
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
R+G F +A +M G C P+ Y L++SY +GM
Sbjct: 355 MYGRLGYFEEAERAWVEMRATG--CVPNATAYCGLMNSYSHHGM 396
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T C++ L + A MK C P+V +Y +IN+L R G ++A L E+M
Sbjct: 138 TYNCMVNACVCLSLFDTASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEM 197
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G P+ +TY L+ +Y + G
Sbjct: 198 KELGR--SPNSWTYNSLLKAYAREG 220
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 5/138 (3%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
+A + + +++ + E C + + R + + + MS+ G V T
Sbjct: 12 QALQVFRFLQEHLEYELKEHNCVTIISILGREGKLGLAREIFEGMSKAGVAPSV--HAYT 69
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC-RVGNFNKARFLLEQMEL 232
L+ ++GL+ EA A F MK+ C P+V YN +INA R L E+M+
Sbjct: 70 ALLSGYAKQGLLKEAWALFEAMKEKGCSPNVLTYNTLINACTKRAYRLPDLVGLFEEMKQ 129
Query: 233 PGFRCPPDVYTYTILISS 250
G + P D+ TY ++++
Sbjct: 130 AGVQ-PNDI-TYNCMVNA 145
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 23/124 (18%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR------- 194
+A+ +K W + M +G C VL L+N YR
Sbjct: 75 YAKQGLLKEAWALFEAMKEKG-----------CSPNVLTYNTLINACTKRAYRLPDLVGL 123
Query: 195 ---MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
MKQ +P+ YN ++NA + F+ A +L++M+ C P+V +YT +I+S
Sbjct: 124 FEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQILKEMK--AVNCLPNVISYTTMINSL 181
Query: 252 CKYG 255
+ G
Sbjct: 182 GRSG 185
>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 569
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T T T LI + G+ AL F M+ +C+P++ Y ++NA R G KA +
Sbjct: 252 STETYTLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIF 311
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
EQ++ G PDVY Y L+ +Y + G
Sbjct: 312 EQLQEDGHE--PDVYAYNALMEAYSRAG 337
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T L+ EGL +A F ++++ PDVYAYN ++ A R G A + M
Sbjct: 290 TYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLM 349
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQ 257
+ G C PD +Y I++ +Y + G+
Sbjct: 350 QHMG--CEPDRASYNIMVDAYGRGGLH 374
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L+K GL+ +A A F M+++ P YN I+ L + GN +A +
Sbjct: 182 TEDTYALLLKAYCTSGLLEKAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIF 241
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++M+ C P TYT+LI+ + K
Sbjct: 242 QRMKRDC--CQPSTETYTLLINLHGK 265
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L++ G A F M+ C PD +YN++++A R G A+ + E+M+ G
Sbjct: 329 LMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLG 388
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P + ++ +L+S+Y K G
Sbjct: 389 I--TPTMKSHMLLLSAYSKAG 407
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I G + L A T++ + + RC P Y +++ A C G KA + +M G
Sbjct: 154 VIDAYGRKSLYKMAETTYFELIEARCIPTEDTYALLLKAYCTSGLLEKAEAIFAEMRKYG 213
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PP Y I K G
Sbjct: 214 L--PPSAIVYNAYIDGLMKAG 232
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+++ +V D + E+ G + +++ L LG+ G + E L M+
Sbjct: 402 AYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTA---MESGP 458
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
D+ YN++IN R G F K L + + + PDV T+T + +Y + + T
Sbjct: 459 YATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNLK--PDVVTWTSRLGAYSRKKLYT 515
>gi|449469180|ref|XP_004152299.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
gi|449484825|ref|XP_004156991.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 579
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 82 ILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIV 141
+LK+ DN++++ ++ Y+ LG K EF+ W F + + M
Sbjct: 89 LLKRFKDNLSSDFVLQILMNYK-----LLGRAKTLEFFSWSGLQMGFRFDASVVEYMADF 143
Query: 142 FARGNNVKGLWDFLK-----EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196
R + L+D +K +S +G ++ T + I+ LG +G V EAL F M+
Sbjct: 144 LGR----RKLFDDMKCLLVTVLSHKGR---ISCRTFSICIRFLGRQGRVREALCLFEEME 196
Query: 197 -QFRCRPDVYAYNVVINALCR---VGNF-NKARFLLEQMELPGFRCPPDVYTYTILISSY 251
+F C+PD +N ++ ALC+ G + A + ++EL PD Y+Y+ +I
Sbjct: 197 PKFGCKPDNLVFNNMLYALCKKEPTGELIDTALKIFRRIEL------PDKYSYSNVIIGL 250
Query: 252 CKYG 255
CK+G
Sbjct: 251 CKFG 254
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ ++K L E V+EA F RM +P + YN VI LC++GN + A + M
Sbjct: 379 SVVMKALCEHRHVDEASDLFGRMLSQGMKPKLAIYNYVICMLCKLGNLDSAERVFGIMNK 438
Query: 233 PGFRCPPDVYTYTILISSY 251
RC PD TY+ LI +Y
Sbjct: 439 K--RCAPDHVTYSALIHAY 455
>gi|222624963|gb|EEE59095.1| hypothetical protein OsJ_10946 [Oryza sativa Japonica Group]
Length = 318
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 157 EMSRRGNGELV----TTSTVTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
EM+R+ E++ STV+C I V G G V+EAL F M + DV YN++
Sbjct: 187 EMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNIL 246
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
I LC+ G ++A + EQ+ G P V T+T LI + C+ G
Sbjct: 247 IQGLCKAGRLSEAIQVYEQLLSSGLE--PSVSTFTPLIDTMCEEG 289
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+EAL F +K D Y I+ LC++G ++AR + +M G P+ Y Y
Sbjct: 117 SEALRVFNEIKLRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGME--PNEYAYC 174
Query: 246 ILISSYCKYG 255
L++ YCK G
Sbjct: 175 SLVAYYCKAG 184
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
V T T I L + G ++EA + M P+ YAY ++ C+ G+F AR +
Sbjct: 133 VDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMARKV 192
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
++M G + + IL++ +C +G
Sbjct: 193 YDEMLGKGLK--ESTVSCNILVTGFCTHG 219
>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R ++ L D + EM R + T T T LI L +EA+A RM Q C+P+
Sbjct: 95 RISDAVALVDQMVEMGYRPD-----TITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPN 149
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+ Y VV+N LC+ G+ + A LL +ME + DV + +I S CKY
Sbjct: 150 LVTYGVVVNGLCKRGDIDLAFNLLNKMEAA--KIEADVVIFNTIIDSLCKY 198
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + V+ + +EMS RG LV T T T LI+ L +G + A F +M
Sbjct: 335 FCKSKRVEDGTELFREMSHRG---LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 391
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ Y+++++ LC G KA + + M+ + D+Y YT +I CK G
Sbjct: 392 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL--DIYIYTTMIEGMCKAG 444
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ M +RG LVT V + L + G ++ A +M+ + DV +N +I+
Sbjct: 137 LVDRMVQRGCQPNLVTYGVV---VNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIID 193
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+LC+ + + A L ++ME G R P+V TY+ LIS C YG
Sbjct: 194 SLCKYRHVDDALNLFKEMETKGIR--PNVVTYSSLISCLCSYG 234
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI +EG EA M + PD++ YN +IN C +KA+ + E M
Sbjct: 257 TFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM 316
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C PD+ TY LI +CK
Sbjct: 317 --VSKDCFPDLDTYNTLIKGFCK 337
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ L G + +AL F M++ + D+Y Y +I +C+ G + L +
Sbjct: 397 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 456
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
L G + P+V TY +IS C
Sbjct: 457 SLKGVK--PNVVTYNTMISGLC 476
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 147 NVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
+V + KEM +G +VT S+ LI L G ++A M + + P++
Sbjct: 200 HVDDALNLFKEMETKGIRPNVVTYSS---LISCLCSYGRWSDASQLLSDMIEKKINPNLV 256
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+N +I+A + G F +A L + M PD++TY LI+ +C +
Sbjct: 257 TFNALIDAFVKEGKFVEAEKLHDDMIKRSI--DPDIFTYNSLINGFCMH 303
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++AL F M+ RP+V Y+ +I+ LC G ++ A LL M + P++ T+
Sbjct: 201 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK--KINPNLVTF 258
Query: 245 TILISSYCKYG 255
LI ++ K G
Sbjct: 259 NALIDAFVKEG 269
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+M++ ++Y YN++IN CR + A LL +M G+ P + T + L++ YC
Sbjct: 35 KMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYE--PSIVTLSSLLNGYC 91
Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+A +M + RPD + +I+ L ++A L+++M G C P++ TY
Sbjct: 96 ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG--CQPNLVTY 153
Query: 245 TILISSYCKYG 255
++++ CK G
Sbjct: 154 GVVVNGLCKRG 164
>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
Length = 439
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 7/145 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++KA E +H +E+ F T + + + + + L+E S + + TS
Sbjct: 86 LDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQLLEESSCCSSDVIAITSV 145
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
K V+EA M + + +PD+ A+NV+I+ C+ G +A +LE +
Sbjct: 146 ARGFCKA----QRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETL 201
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C P+ TYT LI +CK G
Sbjct: 202 VSMG--CVPNAVTYTTLIDGFCKSG 224
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 124 RFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG 183
R H N VT + + + ++ ++ +K+M R T T T L+ L ++G
Sbjct: 239 RDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLR--ADTFTYTTLMDGLCKQG 296
Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
+E F M + C P V Y +++A C+ G+ A+ ++ M G PPDV T
Sbjct: 297 RTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGI--PPDVTT 354
Query: 244 YTILI 248
YT+L+
Sbjct: 355 YTVLL 359
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + N+ K +S R + T LI L + + A +MK R
Sbjct: 220 FCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLR 279
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D + Y +++ LC+ G ++ + E+M G C P V TYT L+ ++CK G
Sbjct: 280 ADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREG--CNPSVVTYTTLVHAHCKAG 331
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L + G +++A+A F + +C P V N++IN C + +KA L +ME
Sbjct: 44 LLASLCQAGTMDQAMAIF---RGIQCSPSVITLNILINGFCELQLLDKALELFHEME-KN 99
Query: 235 FRCPPDVYTYTILISSYCK 253
F P+ TYT +I YCK
Sbjct: 100 FALVPEATTYTAIIKCYCK 118
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L + G + EA+ + +M + C P++ N+++ +LC+ G ++A +
Sbjct: 5 TFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAIFR-- 62
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G +C P V T ILI+ +C+
Sbjct: 63 ---GIQCSPSVITLNILINGFCE 82
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNG--ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F + V + L +M + + ++V + + I + G V EA +
Sbjct: 149 FCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVI---IHGFCKAGRVREAYEMLETLVSMG 205
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C P+ Y +I+ C+ GN ++A L + + P+V T+ LIS CK
Sbjct: 206 CVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCK 259
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ +++ ++ M +G VTT TV L++ L E G V A F ++ + RC P
Sbjct: 329 KAGSLQDAQQVIRSMVAKGIPPDVTTYTV--LLEGLFENGKVRTATEFFEKILRERCPPC 386
Query: 204 VYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
Y+ ++ C+ ++A ++ +E ++ R PD T +L+ CK G
Sbjct: 387 AVVYSALVRGCCKAALVDEAVKYYVEMLDR---RLAPDPATCKLLVEMLCKRG 436
>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 418
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + T T LI + G V+ A+ + +M PD+ YN +I LC+ G+ +
Sbjct: 235 NGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQ 294
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A L+++M + G + PD TYT LI CK G
Sbjct: 295 AHDLIDEMSMKGLK--PDKITYTTLIDGXCKEG 325
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++K D + EMS +G T T LI +EG + A RM + R
Sbjct: 286 LCKKGDLKQAHDLIDEMSMKGLKP--DKITYTTLIDGXCKEGDLETAFEYRKRMIKENIR 343
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D AY +I+ LC+ G A +L +M G + P++ TYT++I+ CK G
Sbjct: 344 XDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK--PEIGTYTMIINEXCKKG 395
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ +EG + A + F + ++ RP V ++N ++N ++G+ ++ L M+ G
Sbjct: 142 LMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASG 201
Query: 235 FRCPPDVYTYTILISSYCK 253
PDVYTY++LI+ CK
Sbjct: 202 VH--PDVYTYSVLINGLCK 218
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++E M+ PDVY Y+V+IN LC+ + A L ++M G P+
Sbjct: 185 GDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGL--VPNXV 242
Query: 243 TYTILISSYCKYG 255
T+T LI +CK G
Sbjct: 243 TFTTLIDGHCKNG 255
>gi|293332227|ref|NP_001169164.1| uncharacterized protein LOC100383014 [Zea mays]
gi|223975267|gb|ACN31821.1| unknown [Zea mays]
Length = 469
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + NV FLK + +G + T T LI L +++A F M ++ R
Sbjct: 265 YLKLGNVHDAKAFLKMVME--HGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVR 322
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+V YNV+I+ LC G+ +KA LL +M++ G PD Y++ I S+C+
Sbjct: 323 PNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGI--TPDAYSFNAPILSFCR 372
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
CRPD + YN +++ +CR G ++A L++QME G R P+V TYT+L+ +C
Sbjct: 6 CRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIR--PNVVTYTMLVDGFC 56
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EMS G V T V LI L G V++A+ +MK PD Y++N I + CR
Sbjct: 315 EMSEWGVRPNVQTYNV--LIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCR 372
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ KA+ L M G PD YTY LI + C
Sbjct: 373 MRKIEKAQKLFNDMSRYGV--SPDSYTYNALIKALC 406
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G L + + +I + G V AL T M++ P++ +N +IN ++GN +
Sbjct: 214 DGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHD 273
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYC 252
A+ L+ + G PDV T+T LI C
Sbjct: 274 AKAFLKMVMEHGLM--PDVITFTSLIDGLC 301
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
FA+ V+ + +K M G + LVT +T LI + G V++A A + +
Sbjct: 230 FAKAGEVERALETIKVMQESGFSPNLVTFNT---LINGYLKLGNVHDAKAFLKMVMEHGL 286
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV + +I+ LC + A +M G R P+V TY +LI C G
Sbjct: 287 MPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVR--PNVQTYNVLIHGLCSAG 339
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ + G+V+EAL +M++ RP+V Y ++++ C +A +LE+M
Sbjct: 12 TYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERM 71
Query: 231 ELPGFRCPPDVY 242
+ G Y
Sbjct: 72 KEKGVSATEATY 83
>gi|226493958|ref|NP_001147934.1| fertility restorer [Zea mays]
gi|195614680|gb|ACG29170.1| fertility restorer [Zea mays]
Length = 563
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+D + M R +G L T + L+ L G ++EA M Q CRP V+ Y ++
Sbjct: 151 YDQIHAMRR--HGLLPDVGTFSTLVTGLCRAGKLDEAWGVLDWMLQEGCRPMVHTYTPIV 208
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
CR G +A L+ ME G CPP+ TY +LI + C
Sbjct: 209 QGYCRQGQIEEATNLIGFMEEAG--CPPNAVTYNVLIRALCD 248
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 23/184 (12%)
Query: 86 EADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEV-TCKEMGIV--- 141
EA ++ + +L G A P + I + Y W FH ++++ + G++
Sbjct: 113 EARSVFDGMLAAGVA----PNASSFNI--LVKLYAWRTADFHLAYDQIHAMRRHGLLPDV 166
Query: 142 ---------FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
R + W L M + G +V T T +++ +G + EA
Sbjct: 167 GTFSTLVTGLCRAGKLDEAWGVLDWMLQEGCRPMV--HTYTPIVQGYCRQGQIEEATNLI 224
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
M++ C P+ YNV+I ALC F + +L ++E G TY I + +
Sbjct: 225 GFMEEAGCPPNAVTYNVLIRALCDDARFAEVEQVLAEIETKGHEL--STVTYNIYMDALG 282
Query: 253 KYGM 256
K GM
Sbjct: 283 KKGM 286
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G ++T T + LG++G+ EAL F ++ P + ++++N LC F++A
Sbjct: 266 GHELSTVTYNIYMDALGKKGMAKEALKQFEALQCKGLHPTAFTLSIILNCLCCTSRFSQA 325
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+LE+ F C V Y ++S C G
Sbjct: 326 ISILERSTDLNF-CAA-VVAYNTVMSRLCDMG 355
>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 418
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + + + T LI ++G V+ A+ + +M PD+ YN +I LC+ G+ +
Sbjct: 235 NGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQ 294
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A+ L+ +M + G + PD TYT LI CK G
Sbjct: 295 AQDLINEMSMKGLK--PDKITYTTLIDGSCKEG 325
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ +EG + A + F + ++ RP V ++N ++N ++G+ N+ L M+ G
Sbjct: 142 LMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASG 201
Query: 235 FRCPPDVYTYTILISSYCK 253
+ PDVYTY++LI+ CK
Sbjct: 202 VQ--PDVYTYSVLINGLCK 218
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ ++K D + EMS +G T T LI +EG + A RM + R
Sbjct: 286 LCKNGDLKQAQDLINEMSMKGLKP--DKITYTTLIDGSCKEGDLETAFEYRKRMIKENIR 343
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D AY +I+ LC+ G A +L +M G + P++ TYT++I+ +CK G
Sbjct: 344 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK--PEIGTYTMIINEFCKKG 395
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G +NE M+ +PDVY Y+V+IN LC+ + A L ++M G P+
Sbjct: 185 GDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGL--VPNSV 242
Query: 243 TYTILISSYCKYG 255
++T LI +CK G
Sbjct: 243 SFTTLIDGHCKDG 255
>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
A GN GL F +EM R N L T +I + ++EA M P
Sbjct: 215 AAGNLEMGLR-FFEEMER--NRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEP 271
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
++ YN+VIN LCRVG + +L +M+ GF PD TY L++ YCK G
Sbjct: 272 NLLTYNMVINGLCRVGRIEETSGVLAEMDRKGF--APDGVTYNTLVNGYCKVG 322
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I L G + E M + PD YN ++N C+VGNF++A L +M
Sbjct: 275 TYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEM 334
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PPDV TYT LI++ CK G
Sbjct: 335 LRNGL--PPDVVTYTSLINTMCKAG 357
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
Query: 144 RGNNVKGLWDFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ N+ +F +M RG NG T T LI ++G ++EA + M +
Sbjct: 355 KAGNLNRAMEFFDQMHVRGLRPNG-----VTYTSLINGFSQKGFMDEAYRIWDEMIRSGF 409
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
P + YN ++N C G +A LL ME G PDV +Y+ +I+ +C+Y
Sbjct: 410 PPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGL--SPDVVSYSTIIAGFCRY 461
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 155 LKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L EM R+G + VT +T L+ + G ++AL M + PDV Y +IN
Sbjct: 296 LAEMDRKGFAPDGVTYNT---LVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINT 352
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+C+ GN N+A +QM + G R P+ TYT LI+ + + G
Sbjct: 353 MCKAGNLNRAMEFFDQMHVRGLR--PNGVTYTSLINGFSQKG 392
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI+ G + L F M++ RC P+V YN VI A C++ ++A LL M L G
Sbjct: 209 LIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEG 268
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P++ TY ++I+ C+ G
Sbjct: 269 LE--PNLLTYNMVINGLCRVG 287
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI+ L E+ +NEA F M PD + Y +IN C+ G+ N+A L ++M
Sbjct: 485 TYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEM 544
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
GF PD TY +LI+ K
Sbjct: 545 IKKGFL--PDTVTYNVLINGLNK 565
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+V LIK +GL+NEA F M + +P+ YNV+I+ CR GN +KA L ++M
Sbjct: 605 SVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEM 664
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQ 257
GF P T L+ + GM
Sbjct: 665 VDFGF--IPHTVTIIALVKALYSEGMD 689
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EM R NG T T LI + + G +N A+ F +M RP+ Y +IN +
Sbjct: 333 EMLR--NGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQ 390
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
G ++A + ++M GF PP + TY L++ +C G
Sbjct: 391 KGFMDEAYRIWDEMIRSGF--PPTIVTYNALLNGHCVSG 427
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+WD EM R G T T L+ G + EA+ M+ PDV +Y+ +
Sbjct: 400 IWD---EMIRSGFPP--TIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTI 454
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
I CR ++A + +M G PD TY+ LI C+
Sbjct: 455 IAGFCRYQELDRAFQMNAEMVEKGV--SPDAITYSSLIQGLCE 495
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y+ +I LC N+A L ++M PD +TYT LI+ YCK G
Sbjct: 481 PDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLL--PDEFTYTSLINGYCKEG 532
>gi|357486821|ref|XP_003613698.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515033|gb|AES96656.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 749
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I+ L +EG V EA M Q PD Y YN VI LC VG N+A+ L ++E+
Sbjct: 300 MIRGLSKEGRVGEAAKMLEEMTQIGLTPDAYCYNAVIQGLCDVGLLNRAQSL--RLEIS- 356
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
+V T+TILI CK GM
Sbjct: 357 ---EHNVCTHTILICEMCKRGM 375
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
+ F WV F E C I+F R N W+ L+ + + NG LVT+ +V
Sbjct: 32 RGIRFCIWVALKFENLSYEPYCLVNRILFHR-NWYSIYWEALELLKK--NGVLVTSDSVR 88
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L++ G +A+ +F RM++F PD + YN ++ + A L M
Sbjct: 89 ALVRSYSHMGYTEKAIESFSRMREFGIEPDAHMYNTILRDVLNEKLLELALALYTTMLKS 148
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
P+ YTY +LI +CK G
Sbjct: 149 NV--EPNFYTYNMLIDGFCKRG 168
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + + G+V EA F +M++ C P V +N +IN LC+ N KA+ L ++
Sbjct: 362 THTILICEMCKRGMVAEAQELFNQMEKLGCEPSVVTFNTLINGLCKANNLEKAKNLFCKL 421
Query: 231 EL 232
E+
Sbjct: 422 EV 423
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + VKG + L EM R G V ++T ++ + V+EA F MK+
Sbjct: 164 FCKRGEVKGAQEMLDEMKRVGIVPCVLSTT--SILYGCCQANNVDEAHKLFNDMKETSYP 221
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD+ + NVV+N C++G +A + ++ GF + +Y+ LI+++ K
Sbjct: 222 PDMISCNVVLNGFCKMGRLEEALSFVWMIKNDGFSLNRN--SYSSLINAFFK 271
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ +G + ++ + LI + EA A + +M + PDV Y ++I L + G
Sbjct: 251 KNDGFSLNRNSYSSLINAFFKARRYREAHAWYTKMFKQGIVPDVVLYAIMIRGLSKEGRV 310
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+A +LE+M G PD Y Y +I C G+
Sbjct: 311 GEAAKMLEEMTQIGL--TPDAYCYNAVIQGLCDVGL 344
>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 719
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 17/146 (11%)
Query: 121 WVERFFHFFHNEVTCKEMGI----------VFARGNNVKGLWDFLKEMSRRG-NGELVTT 169
WVE + + E++ +G+ + ++ + FL E+ +G ++VT
Sbjct: 205 WVELAWRIYQ-EISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTY 263
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T LI +GL+ EA + M P VY YN VIN LC+ G + +A+ + +
Sbjct: 264 NT---LISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAE 320
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M G PD TY L+ CK G
Sbjct: 321 MLRSGL--SPDSTTYRSLLMEACKKG 344
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI+ +G+++EA+ M Q C DV YN +++ LC+ +A L +M
Sbjct: 404 TILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTE 463
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G PD YT TILI +CK G
Sbjct: 464 RGLF--PDSYTLTILIDGHCKLG 484
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R G V+ LI L G V A + + + +VY N+++NALC+ G
Sbjct: 182 RSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKM 241
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
K L +++ G PD+ TY LIS+Y G+
Sbjct: 242 EKVGTFLSEVQEKGVY--PDIVTYNTLISAYSSQGL 275
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
L T + + L+ L +G ++EA + M +P V N +I CR GN +
Sbjct: 537 LPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEI 596
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCK 253
LE+M GF PD +Y LI + K
Sbjct: 597 FLEKMISEGF--VPDCISYNTLIYGFVK 622
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EM+ RG + T+T LI + G + A+ F +MK+ R + DV YN +++ +
Sbjct: 460 EMTERG--LFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGK 517
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
VG+ + A+ + M P +++IL+++ C G
Sbjct: 518 VGDIDTAKEIWADM--VSKEILPTPISFSILVNALCSKG 554
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
++T L+ ++G E F M+ PD+ ++ +++ R GN +KA
Sbjct: 330 STTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFN 389
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
++ G PD YTILI YC+ GM
Sbjct: 390 SVKEAGL--IPDNVIYTILIQGYCRKGM 415
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ ++ + G +++AL F +K+ PD Y ++I CR G ++A L +M
Sbjct: 369 SSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQ 428
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
G C DV TY ++ CK M
Sbjct: 429 QG--CAMDVVTYNTILHGLCKRKM 450
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVT---CLIKVLGEEGLVNEALATFYRMKQ 197
+ R + + EM ++G ++VT +T+ C K+LGE A F M +
Sbjct: 410 YCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGE------ADKLFNEMTE 463
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y ++I+ C++GN A L ++M+ R DV TY L+ + K G
Sbjct: 464 RGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEK--RIKLDVVTYNTLLDGFGKVG 519
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PD +YN +I + N +KA L+++ME PDV+TY ++ +C+
Sbjct: 608 PDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCR 659
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALAT 191
+ C M + R N FL++M G + ++ +T LI +E +++A
Sbjct: 576 MICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNT---LIYGFVKEENMSKAFGL 632
Query: 192 FYRM--KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
+M KQ PDV+ YN +++ CR +A +L +M G PD TYT LI+
Sbjct: 633 VKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVN--PDRSTYTSLIN 690
Query: 250 SY 251
+
Sbjct: 691 GF 692
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.325 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,959,122,512
Number of Sequences: 23463169
Number of extensions: 155194526
Number of successful extensions: 468706
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3034
Number of HSP's successfully gapped in prelim test: 1880
Number of HSP's that attempted gapping in prelim test: 419261
Number of HSP's gapped (non-prelim): 35496
length of query: 258
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 119
effective length of database: 9,097,814,876
effective search space: 1082639970244
effective search space used: 1082639970244
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 75 (33.5 bits)