BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047392
         (258 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
           Docking Peptide
 pdb|4H3P|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
           Docking Peptide
 pdb|4H3P|D Chain D, Crystal Structure Of Human Erk2 Complexed With A Mapk
           Docking Peptide
          Length = 362

 Score = 30.8 bits (68), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 21/150 (14%)

Query: 100 AAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFA-RGNNVKGLWDFLKE- 157
           +AY N  KV + I K + F H         + + T +E+ I+ A R  N+ G+ D ++  
Sbjct: 43  SAYDNVNKVRVAIKKISPFEHQT-------YCQRTLREIKILLAFRHENIIGINDIIRAP 95

Query: 158 -MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF---------YRMKQFRCRPDVYAY 207
            + +  +  +V     T L K+L  + L N+ +  F         Y         D+   
Sbjct: 96  TIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPS 155

Query: 208 NVVINALC--RVGNFNKARFLLEQMELPGF 235
           N+++N  C  ++ +F  AR      +  GF
Sbjct: 156 NLLLNTTCDLKICDFGLARVADPDHDHTGF 185


>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
           : Trnaasp : Aspartyl-Adenylate Complex
          Length = 585

 Score = 29.6 bits (65), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 40  QNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLG 98
           +NP  +  VAD+LKS+    F  P +  +      R P    + +K+ D   N V + G
Sbjct: 287 RNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYG 345


>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
           Escherichia Coli
 pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
           Escherichia Coli
 pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
           Escherichia Coli
 pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
           Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
 pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
           Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
          Length = 590

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 40  QNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLG 98
           +NP  +  VAD+LKS+    F  P +  +      R P    + +K+ D   N V + G
Sbjct: 287 RNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYG 345


>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
           Homomalla
 pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
           Homomalla
          Length = 1066

 Score = 27.7 bits (60), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 23/51 (45%)

Query: 75  RTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERF 125
           +TPL   +L+K A NIAN    LG    ++P+            Y WV+  
Sbjct: 309 KTPLSPDVLEKTAFNIANQPASLGLLEAKSPEDYNSIGELRVAVYTWVQHL 359


>pdb|3I4P|A Chain A, Crystal Structure Of Asnc Family Transcriptional Regulator
           From Agrobacterium Tumefaciens
          Length = 162

 Score = 27.3 bits (59), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 76  TPLKQRILKKEADN-IANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERF 125
           TP  +RI K E D  I   V +L P        V + I  A+    W++RF
Sbjct: 32  TPCWRRIQKXEEDGVIRRRVALLDPVKVNTKVTVFVSIRTASHSIEWLKRF 82


>pdb|1U5U|A Chain A, The Structure Of An Allene Oxide Synthase Reveals A Novel
           Use For A Catalase Fold
 pdb|1U5U|B Chain B, The Structure Of An Allene Oxide Synthase Reveals A Novel
           Use For A Catalase Fold
          Length = 374

 Score = 27.3 bits (59), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 23/51 (45%)

Query: 75  RTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERF 125
           +TPL   +L+K A NIAN    LG    ++P+            Y WV+  
Sbjct: 309 KTPLSPDVLEKTAFNIANQPASLGLLEAKSPEDYNSIGELRVAVYTWVQHL 359


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,424,768
Number of Sequences: 62578
Number of extensions: 287798
Number of successful extensions: 830
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 7
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)