BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047392
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1PFC5|PP130_ARATH Pentatricopeptide repeat-containing protein At1g77405
OS=Arabidopsis thaliana GN=At1g77405 PE=2 SV=1
Length = 458
Score = 345 bits (886), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 162/259 (62%), Positives = 206/259 (79%), Gaps = 6/259 (2%)
Query: 1 MIVSKPLNSNHTCLVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
M S+PL + +V Q++ +++N PFDA LA+ST P+T + V+DVL SIPRFFF
Sbjct: 1 MKPSQPLCNR---IVDQLITAMIQNRPFDAVLASSTVA--KPWTQQLVSDVLHSIPRFFF 55
Query: 61 QSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYH 120
SPRSIGRQ GFRHR+PLKQR L E+ + VLVLGP AY +P+KV++G+ KA EF+
Sbjct: 56 ISPRSIGRQKGFRHRSPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFF 115
Query: 121 WVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE-LVTTSTVTCLIKVL 179
W+E F F HNE+TC++M + A+GN+ KGLWDFL+++SRR NG+ +VTT+++TCL+K L
Sbjct: 116 WIETHFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCL 175
Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
GEEG V EALATFYRMK++ C+PDVYAYN +INALCRVGNF KARFLL+QM+LPGFR PP
Sbjct: 176 GEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPP 235
Query: 240 DVYTYTILISSYCKYGMQT 258
D YTYTILISSYC+YGMQT
Sbjct: 236 DTYTYTILISSYCRYGMQT 254
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
PDV YN +I+ C+ +A L E M+ G C P+ TY I Y
Sbjct: 281 PDVVTYNCLIDGCCKTNRIGRALELFEDMKTKG--CVPNQVTYNSFIRYY 328
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N+VT ++ N ++G + ++ M + G+G + +ST T LI L E EA
Sbjct: 317 NQVTYNSFIRYYSVTNEIEGAIEMMRTMKKLGHG-VPGSSTYTPLIHALVETRRAAEARD 375
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVG 218
M + P Y Y +V +AL G
Sbjct: 376 LVVEMVEAGLVPREYTYKLVCDALSSEG 403
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 37/180 (20%)
Query: 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS 170
G N+A F+ W + H+ T M V + N +W+ + EM++ +LVT
Sbjct: 145 GWNQAYGFFIWANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLD 204
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQF-------------------------------- 198
T++ +++ L + G N+A+ F M++
Sbjct: 205 TMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLK 264
Query: 199 ---RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD +N++I+ C+ F+ AR +++ M++ F PDV TYT + +YCK G
Sbjct: 265 LFDTIKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEF--TPDVVTYTSFVEAYCKEG 322
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 73/160 (45%), Gaps = 16/160 (10%)
Query: 93 NVLVLGPAAYR--NPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKG 150
N+L+ G R + + + + K TEF V + F E CKE F R N
Sbjct: 277 NILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFV--EAYCKEGD--FRRVN---- 328
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+ L+EM R NG T T ++ LG+ V EAL + +MK+ C PD Y+ +
Sbjct: 329 --EMLEEM--RENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSL 384
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
I+ L + G F A + E M G R DV Y +IS+
Sbjct: 385 IHILSKTGRFKDAAEIFEDMTNQGVR--RDVLVYNTMISA 422
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
++A A MK PDV Y + A C+ G+F + +LE+M G C P+V TYT
Sbjct: 290 DDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENG--CNPNVVTYT 347
Query: 246 ILISSYCK 253
I++ S K
Sbjct: 348 IVMHSLGK 355
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 4/143 (2%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
N F+ W + +FH+ CK M ++ ++ +W ++EM R+ N EL+
Sbjct: 112 NLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEM-RKTNPELIEPELF 170
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
L++ +V +A+ M ++ PD Y + +++ALC+ G+ +A + E M
Sbjct: 171 VVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMRE 230
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+ PP++ +T L+ +C+ G
Sbjct: 231 ---KFPPNLRYFTSLLYGWCREG 250
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN-FNKARFLLEQME 231
T L+ G + +A M++ P+V Y V+I ALCR ++A + +ME
Sbjct: 275 TNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEME 334
Query: 232 LPGFRCPPDVYTYTILISSYCKYGM 256
G C D+ TYT LIS +CK+GM
Sbjct: 335 RYG--CEADIVTYTALISGFCKWGM 357
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG--LVNEALATFYRMKQFR 199
F + + + L +M ++G V S VT + ++ E E L +MK+
Sbjct: 352 FCKWGMIDKGYSVLDDMRKKG----VMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRG 407
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C PD+ YNVVI C++G +A L +ME G P V T+ I+I+ + G
Sbjct: 408 CHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGL--SPGVDTFVIMINGFTSQG 461
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 36/148 (24%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE-EGLVNEALATFYRMKQFRC 200
+A + +D + +M +RG V TV LI+ L E ++EA+ F M+++ C
Sbjct: 281 YAHAGKMADAYDLMNDMRKRGFEPNVNCYTV--LIQALCRTEKRMDEAMRVFVEMERYGC 338
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR------------------------ 236
D+ Y +I+ C+ G +K +L+ M G
Sbjct: 339 EADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLE 398
Query: 237 ---------CPPDVYTYTILISSYCKYG 255
C PD+ Y ++I CK G
Sbjct: 399 LIEKMKRRGCHPDLLIYNVVIRLACKLG 426
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T+T LIK L EG V+EA+ RM + C+PDV YN ++N +CR G+ + A LL
Sbjct: 158 TTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLR 217
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+ME + DV+TY+ +I S C+ G
Sbjct: 218 KMEERNVK--ADVFTYSTIIDSLCRDG 242
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
R + D L++M R ++ T ST+ I L +G ++ A++ F M+
Sbjct: 203 ICRSGDTSLALDLLRKMEERNVKADVFTYSTI---IDSLCRDGCIDAAISLFKEMETKGI 259
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ V YN ++ LC+ G +N LL+ M P+V T+ +L+ + K G
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDM--VSREIVPNVITFNVLLDVFVKEG 312
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 142 FARGNNVKGLWD----FLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMK 196
RG G W+ LK+M R E+V T L+ V +EG + EA + M
Sbjct: 269 LVRGLCKAGKWNDGALLLKDMVSR---EIVPNVITFNVLLDVFVKEGKLQEANELYKEMI 325
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P++ YN +++ C ++A +L+ M +C PD+ T+T LI YC
Sbjct: 326 TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRN--KCSPDIVTFTSLIKGYC 379
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + +K + +EM +G L T L+ L + G + +AL F +++ +
Sbjct: 413 FCQSGKIKLAEELFQEMV--SHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 470
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ Y +I +C+ G A L + G + P+V TYT++IS CK G
Sbjct: 471 LGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVK--PNVMTYTVMISGLCKKG 522
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I+ + + G V +A F + +P+V Y V+I+ LC+ G+ ++A LL +ME
Sbjct: 477 TTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 536
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G P+ TY LI ++ + G
Sbjct: 537 DGN--APNDCTYNTLIRAHLRDG 557
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
R + KEM +G + +S VT L++ L + G N+ M
Sbjct: 238 LCRDGCIDAAISLFKEMETKG----IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE 293
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
P+V +NV+++ + G +A L ++M G P++ TY L+ YC
Sbjct: 294 IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGI--SPNIITYNTLMDGYC 344
Score = 38.1 bits (87), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 122 VERFFHFFHNEVTCK-EMGIVF--------ARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
+E+ F + K ++GIV +G V+ W+ + +G V T TV
Sbjct: 454 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 513
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+I L ++G ++EA +M++ P+ YN +I A R G+ + L+E+M+
Sbjct: 514 --MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKS 571
Query: 233 PGF 235
GF
Sbjct: 572 CGF 574
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
++A+A F M + R P + ++ +A+ R FN +Q+EL G ++YT
Sbjct: 70 DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGI--AHNIYTLN 127
Query: 246 ILISSYCK 253
I+I+ +C+
Sbjct: 128 IMINCFCR 135
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
VF + ++ + KEM RG + ++T +T L+ + ++EA M + +
Sbjct: 307 VFVKEGKLQEANELYKEMITRGISPNIITYNT---LMDGYCMQNRLSEANNMLDLMVRNK 363
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C PD+ + +I C V + + + G + TY+IL+ +C+ G
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGL--VANAVTYSILVQGFCQSG 417
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 32/213 (15%)
Query: 45 IESVADVLKSIPRFFFQSPR----SIGRQTGFRHRTPLKQRILKKEADNIANNVLVLGPA 100
+ VADV K+I + SP+ S Q+G R + ++ +++ N G
Sbjct: 65 VRDVADVAKNISKVLMSSPQLVLDSALDQSGLR--------VSQEVVEDVLNRFRNAGLL 116
Query: 101 AYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSR 160
YR F+ W E+ H+ H+ M A+ K +WD + M +
Sbjct: 117 TYR--------------FFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRK 162
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ +++ T +++ V+EA+ F M+++ P++ A+N +++ALC+ N
Sbjct: 163 K---KMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNV 219
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
KA+ + E M R PD TY+IL+ + K
Sbjct: 220 RKAQEVFENMR---DRFTPDSKTYSILLEGWGK 249
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ NV+ + + M R + + T + L++ G+E + +A F M C
Sbjct: 213 LCKSKNVRKAQEVFENMRDRFTPD---SKTYSILLEGWGKEPNLPKAREVFREMIDAGCH 269
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
PD+ Y+++++ LC+ G ++A ++ M+ P C P + Y++L+ +Y
Sbjct: 270 PDIVTYSIMVDILCKAGRVDEALGIVRSMD-PSI-CKPTTFIYSVLVHTY 317
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + ++ +L + G V+EAL M C+P + Y+V+++ +A +M
Sbjct: 274 TYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEM 333
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E G + DV + LI ++CK
Sbjct: 334 ERSGMK--ADVAVFNSLIGAFCK 354
Score = 37.4 bits (85), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 42/132 (31%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEALATFYRMKQFR 199
F + N +K ++ LKEM +G VT ++ +C +++ L E G +EA F +M +
Sbjct: 352 FCKANRMKNVYRVLKEMKSKG----VTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKV- 406
Query: 200 CRPD-----------------------------------VYAYNVVINALCRVGNFNKAR 224
C PD ++ ++V+IN LC KA
Sbjct: 407 CEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKAC 466
Query: 225 FLLEQMELPGFR 236
LLE+M G R
Sbjct: 467 VLLEEMIEMGIR 478
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 170 STVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
S ++C L+ L +E + + M + + +P+V+ +NVVINALC+ G NKAR ++
Sbjct: 187 SALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVM 246
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
E M++ G C P+V +Y LI YCK G
Sbjct: 247 EDMKVYG--CSPNVVSYNTLIDGYCKLG 272
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 153 DFLKEM-----SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
D LKE S +G G + TT LI + G +++ A M++ PDV Y
Sbjct: 380 DMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTY 439
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
N +I LCR GN A+ L +Q+ G PD+ T+ IL+ YC+ G
Sbjct: 440 NCLIAGLCRNGNIEAAKKLFDQLTSKGL---PDLVTFHILMEGYCRKG 484
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI + ++ EAL F +K P YN++I+A C++G + L E+M
Sbjct: 368 TYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEM 427
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G PDV TY LI+ C+ G
Sbjct: 428 EREGI--VPDVGTYNCLIAGLCRNG 450
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 88 DNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN 147
++I ++LVL AY N + LG ++ + + ++CK + I + N
Sbjct: 152 NSIIADMLVL---AYANNSRFELGFEAFKR-----SGYYGYKLSALSCKPLMIALLKENR 203
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
+ KEM RR V T V +I L + G +N+A MK + C P+V +Y
Sbjct: 204 SADVEYVYKEMIRRKIQPNVFTFNV--VINALCKTGKMNKARDVMEDMKVYGCSPNVVSY 261
Query: 208 NVVINALCRVGN---FNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N +I+ C++G KA +L++M P++ T+ ILI + K
Sbjct: 262 NTLIDGYCKLGGNGKMYKADAVLKEMVENDV--SPNLTTFNILIDGFWK 308
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM R G + T CLI L G + A F ++ + PD+ +++++ C
Sbjct: 425 EEMEREG--IVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTS-KGLPDLVTFHILMEGYC 481
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R G KA LL++M G + P TY I++ YCK G
Sbjct: 482 RKGESRKAAMLLKEMSKMGLK--PRHLTYNIVMKGYCKEG 519
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
++ F M +P+V +YN +IN LC G ++A + ++M G + P++ TY L
Sbjct: 315 SMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQ--PNLITYNAL 372
Query: 248 ISSYCKYGM 256
I+ +CK M
Sbjct: 373 INGFCKNDM 381
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R N++ +++ +G +LVT L++ +G +A M + +
Sbjct: 446 LCRNGNIEAAKKLFDQLTSKGLPDLVT---FHILMEGYCRKGESRKAAMLLKEMSKMGLK 502
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P YN+V+ C+ GN A + QME R +V +Y +L+ Y + G
Sbjct: 503 PRHLTYNIVMKGYCKEGNLKAATNMRTQME-KERRLRMNVASYNVLLQGYSQKG 555
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI+ L G +AL M F C PD+ YN +I C+ NKA + +
Sbjct: 206 TKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFK 265
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
++ G C PDV TYT +IS YCK G
Sbjct: 266 DVK-SGSVCSPDVVTYTSMISGYCKAG 291
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
V L+ L + V +A+ F +F+ D +N++I LC VG KA LL M
Sbjct: 174 VNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMS 233
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
GF C PD+ TY LI +CK
Sbjct: 234 --GFGCEPDIVTYNTLIQGFCK 253
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 85 KEADNIANNVLVLGPAAYRNPQKVTL-----GINKATEFYHWVER-----FFHFFHNEVT 134
+EA ++ +++L LG P VT G KA E E F F + VT
Sbjct: 294 REASSLLDDMLRLGIY----PTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVT 349
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
+ + R V + +EM+ RG T + LI L E + +A +
Sbjct: 350 FTSLIDGYCRVGQVSQGFRLWEEMNARG--MFPNAFTYSILINALCNENRLLKARELLGQ 407
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+ P + YN VI+ C+ G N+A ++E+ME +C PD T+TILI +C
Sbjct: 408 LASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKK--KCKPDKITFTILIIGHCMK 465
Query: 255 G 255
G
Sbjct: 466 G 466
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+NKA+E + V+ + VT M + + ++ L +M R G T T
Sbjct: 257 LNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLG--IYPTNVT 314
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
L+ + G + A +M F C PDV + +I+ CRVG ++ L E+M
Sbjct: 315 FNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMN 374
Query: 232 LPGFRCPPDVYTYTILISSYC 252
G P+ +TY+ILI++ C
Sbjct: 375 ARGMF--PNAFTYSILINALC 393
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G VNEA M++ +C+PD + ++I C G +A + +M G C PD
Sbjct: 431 GKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIG--CSPDKI 488
Query: 243 TYTILISSYCKYGM 256
T + L+S K GM
Sbjct: 489 TVSSLLSCLLKAGM 502
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Query: 124 RFFHFFHNEVTCKEMGIVFA----------RGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
+ F EVTC + ++ R GL D + E G +T T T
Sbjct: 251 KVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGE-----KGCQPSTRTYT 305
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
LIK L + GL+++A F M C+P+V+ Y V+I+ LCR G +A + +M
Sbjct: 306 VLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKD 365
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
R P V TY LI+ YCK G
Sbjct: 366 --RIFPSVITYNALINGYCKDG 385
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+A+ RM PD+ +YNV+I+ LCR G+ N A LL M F PD T+T
Sbjct: 424 KAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNC--FDIEPDCLTFTA 481
Query: 247 LISSYCKYG 255
+I+++CK G
Sbjct: 482 IINAFCKQG 490
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
L T ++ ++ +L + V E LA ++ + P V Y +++ L R G+ +
Sbjct: 543 LTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFR 602
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+LE M+L G C P+VY YTI+I+ C++G
Sbjct: 603 ILELMKLSG--CLPNVYPYTIIINGLCQFG 630
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 185 VNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
+ +AL F M K+ C P+ +Y+++I+ LC VG +A L +QM G C P T
Sbjct: 246 LRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKG--CQPSTRT 303
Query: 244 YTILISSYCKYGM 256
YT+LI + C G+
Sbjct: 304 YTVLIKALCDRGL 316
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ ++G VK L ++++ G LV + T T L+ L G + + MK
Sbjct: 555 MLSKGCKVKEELAMLGKINKLG---LVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSG 611
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+VY Y ++IN LC+ G +A LL M+ G P+ TYT+++ Y G
Sbjct: 612 CLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGV--SPNHVTYTVMVKGYVNNG 665
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI ++G V A M++ C+P+V +N ++ LCRVG KA LL++M
Sbjct: 373 TYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRM 432
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G PD+ +Y +LI C+ G
Sbjct: 433 LDNGL--SPDIVSYNVLIDGLCREG 455
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 149 KGLWD----FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
+GL D EM RG V T TV LI L +G + EA +M + R P V
Sbjct: 314 RGLIDKAFNLFDEMIPRGCKPNVHTYTV--LIDGLCRDGKIEEANGVCRKMVKDRIFPSV 371
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN +IN C+ G A LL ME C P+V T+ L+ C+ G
Sbjct: 372 ITYNALINGYCKDGRVVPAFELLTVMEKRA--CKPNVRTFNELMEGLCRVG 420
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L EG +N A M F PD + +INA C+ G + A L M G
Sbjct: 447 LIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKG 506
Query: 235 FRCPPDVYTYTILISSYCKYG 255
D T T LI CK G
Sbjct: 507 I--SLDEVTGTTLIDGVCKVG 525
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+ I+ RG D EM RR G + T LI + +V+EA F M+
Sbjct: 180 LSILLKRGRTGMA-HDLFDEM-RRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMEL 237
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ C PDV YN +I+ LCR G A +L M P+V +YT L+ YC
Sbjct: 238 YHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYC 292
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Query: 118 FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL-VTTSTVTCLI 176
F+ WV F H E + M R N+ +FL + RR NG + + LI
Sbjct: 87 FFDWVSNK-GFSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLI 145
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
+ G GL E++ F MKQ P V +N +++ L + G A L ++M +
Sbjct: 146 RSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMR-RTYG 204
Query: 237 CPPDVYTYTILISSYCKYGM 256
PD YT+ LI+ +CK M
Sbjct: 205 VTPDSYTFNTLINGFCKNSM 224
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 148 VKGL-----WDFLKEMSRRGNGELVTTSTVTC----LIKVLGEEGLVNEALATFYRMKQF 198
+KGL +D +K++ GN T + C LIK + G ++ A+ F M
Sbjct: 323 IKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNM 382
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQM-----ELPGFRCPPDVYTYTILISSYCK 253
+ PD +Y+V+I LC F++A L ++ L C P Y + C
Sbjct: 383 KLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCA 442
Query: 254 YG 255
G
Sbjct: 443 NG 444
Score = 37.7 bits (86), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
E L NE + + C+P AYN + LC G +A + Q+ G + PP
Sbjct: 408 ETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQDPP-- 465
Query: 242 YTYTILISSYCKYG 255
+Y LI+ +C+ G
Sbjct: 466 -SYKTLITGHCREG 478
>sp|Q9M1D8|PP288_ARATH Pentatricopeptide repeat-containing protein At3g60050
OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1
Length = 473
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 115 ATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174
A F+ W F H + + +FA K +W + EM + +G T T
Sbjct: 132 AYRFFLWSGEQECFRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQ--DGFPTTARTFNL 189
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI GE GL +A+ F + K F RP ++YN ++N+L V + ++ +QM G
Sbjct: 190 LICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDG 249
Query: 235 FRCPPDVYTYTILISSYCKYG 255
F PDV TY IL+ + + G
Sbjct: 250 F--SPDVLTYNILLWTNYRLG 268
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
EM+R G + T L+ +LG+ AL T MK+ P V Y +I+
Sbjct: 276 LFDEMARDGFSP--DSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDG 333
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L R GN ++ L++M G C PDV YT++I+ Y G
Sbjct: 334 LSRAGNLEACKYFLDEMVKAG--CRPDVVCYTVMITGYVVSG 373
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+R N++ FL EM + G V TV V+ E +++A F M
Sbjct: 334 LSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGE--LDKAKEMFREMTVKGQL 391
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V+ YN +I LC G F +A +LL++ME G C P+ Y+ L+S K G
Sbjct: 392 PNVFTYNSMIRGLCMAGEFREACWLLKEMESRG--CNPNFVVYSTLVSYLRKAG 443
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI L G + M + CRPDV Y V+I G +KA+ + +M +
Sbjct: 328 TTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTV 387
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
G P+V+TY +I C G
Sbjct: 388 KG--QLPNVFTYNSMIRGLCMAG 408
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGN--GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
V G V G D KEM R G+L T +I+ L G EA M+
Sbjct: 364 VMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESR 423
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
C P+ Y+ +++ L + G ++AR ++ +M G
Sbjct: 424 GCNPNFVVYSTLVSYLRKAGKLSEARKVIREMVKKG 459
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 2/153 (1%)
Query: 103 RNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162
R+ ++ + IN +F+ W + +F H+ T + ++ ++E+ R
Sbjct: 97 RSILEIDVEINVKIQFFKWAGKRRNFQHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNT 156
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
V+ + ++ L+K LG +V++AL+ FY+ K +C+P YN VI L + G K
Sbjct: 157 YVS-VSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEK 215
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ +M G C PD TY+ LISSY K G
Sbjct: 216 VHEVYTEMCNEG-DCFPDTITYSALISSYEKLG 247
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
V++ +IK G+ G ++EA+ F MK PDVYAYN +++ + + G N+A L
Sbjct: 477 VSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSL 536
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGM 256
L +ME G C D+ ++ I+++ + + G+
Sbjct: 537 LRKMEENG--CRADINSHNIILNGFARTGV 564
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + D EM +G+G V L+ + + G++NEA + +M++ CR
Sbjct: 489 FGKCGKLSEAVDLFNEMKNQGSGPDVYA--YNALMSGMVKAGMINEANSLLRKMEENGCR 546
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
D+ ++N+++N R G +A + E ++ G + PD TY L+ + GM
Sbjct: 547 ADINSHNIILNGFARTGVPRRAIEMFETIKHSGIK--PDGVTYNTLLGCFAHAGM 599
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
+GI F G K L D +EM R G T T T LIK LG+ G V+EA + M +
Sbjct: 275 LGIYFKVGKVEKAL-DLFEEMKRAGCSP--TVYTYTELIKGLGKAGRVDEAYGFYKDMLR 331
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
PDV N ++N L +VG + + +M + +RC P V +Y +I +
Sbjct: 332 DGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGM--WRCTPTVVSYNTVIKA 382
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFR 199
+ V + F K+M R G +T V L+ +LG+ G V E F M +R
Sbjct: 313 LGKAGRVDEAYGFYKDMLRDG----LTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWR 368
Query: 200 CRPDVYAYNVVINALCRV-GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C P V +YN VI AL + ++ ++M+ P +TY+ILI YCK
Sbjct: 369 CTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADS--VSPSEFTYSILIDGYCK 421
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T + LI + G + A+ F MK +P Y ++ +VG KA L E
Sbjct: 233 TITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFE 292
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M+ G C P VYTYT LI K G
Sbjct: 293 EMKRAG--CSPTVYTYTELIKGLGKAG 317
Score = 38.9 bits (89), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L+ + + G V +AL F MK+ C P VY Y +I L + G ++A
Sbjct: 267 TEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFY 326
Query: 228 EQMELPGFRCPPDV 241
+ M G PDV
Sbjct: 327 KDMLRDGL--TPDV 338
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G+ A+ F +K +PD YN ++ G F +A ++ +M+ GF D
Sbjct: 563 GVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEY--DAI 620
Query: 243 TYTILISS 250
TY+ ++ +
Sbjct: 621 TYSSILDA 628
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALA 190
+ CKE + ARG +EM RG LV T T +I G+ G +++ +
Sbjct: 270 DCMCKEGDVEAARG--------LFEEMKFRG---LVPDTVTYNSMIDGFGKVGRLDDTVC 318
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F MK C PDV YN +IN C+ G +M+ G + P+V +Y+ L+ +
Sbjct: 319 FFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLK--PNVVSYSTLVDA 376
Query: 251 YCKYGM 256
+CK GM
Sbjct: 377 FCKEGM 382
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 93/246 (37%), Gaps = 33/246 (13%)
Query: 39 TQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHR---------------------TP 77
T P + V LK P+ F+ + + GF+H +
Sbjct: 105 TLAPIWVPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSV 164
Query: 78 LKQRILKKEADNIAN------NVLVLGPAAYRNPQKVTLGINKATEFYHWVERF--FHFF 129
LK+ +L K ++ + NV V G + V + + E + F F
Sbjct: 165 LKEMVLSKADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVF 224
Query: 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189
+C + FA+ + F K+M G G T T +I + +EG V A
Sbjct: 225 PKTRSCNGLLHRFAKLGKTDDVKRFFKDMI--GAGARPTVFTYNIMIDCMCKEGDVEAAR 282
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
F MK PD YN +I+ +VG + E+M+ C PDV TY LI+
Sbjct: 283 GLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMK--DMCCEPDVITYNALIN 340
Query: 250 SYCKYG 255
+CK+G
Sbjct: 341 CFCKFG 346
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+F +EM +GNG + + L+ +EG++ +A+ + M++ P+ Y Y +I+
Sbjct: 353 EFYREM--KGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 410
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
A C++GN + A L +M G +V TYT LI C
Sbjct: 411 ANCKIGNLSDAFRLGNEMLQVGVE--WNVVTYTALIDGLC 448
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++KA ++++ + F N M + N V+ ++M ++G LV T
Sbjct: 593 VSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKG---LVPDRT 649
Query: 172 V-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ ++G V EALA +M + + D+ AY ++ L KAR LE+M
Sbjct: 650 AYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 709
Query: 231 ELPGFRCPPDVYTYTILISSY 251
G P +V ++L Y
Sbjct: 710 IGEGIH-PDEVLCISVLKKHY 729
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++ AL +K +PD+ Y I LC + A+ ++ +M+ G + + Y
Sbjct: 488 MDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIK--ANSLIY 545
Query: 245 TILISSYCKYG 255
T L+ +Y K G
Sbjct: 546 TTLMDAYFKSG 556
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 98 GPAAYRNPQKVTLGIN---------------KATEFYHWVERFFHFFHNEVTCKEMGIVF 142
GPAA Q + L I+ A F++W++R F H+ T M
Sbjct: 315 GPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNL 374
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
R + L EM R +G T T LI G +NEA+ F +M++ C+P
Sbjct: 375 GRAKQFGAINKLLDEMVR--DGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKP 432
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
D Y +I+ + G + A + ++M+ G PD +TY+++I+ K G
Sbjct: 433 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLS--PDTFTYSVIINCLGKAG 483
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 150 GLWDFLKEMSRR--GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G D +M +R G T T + +I LG+ G + A F M C P++ Y
Sbjct: 448 GFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTY 507
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS--SYCKY 254
N++++ + N+ A L M+ GF PD TY+I++ +C Y
Sbjct: 508 NIMMDLHAKARNYQNALKLYRDMQNAGFE--PDKVTYSIVMEVLGHCGY 554
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT M + A+ N + ++M G + VT S V ++VLG G + EA
Sbjct: 503 NLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIV---MEVLGHCGYLEEAE 559
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
A F M+Q PD Y ++++ + GN KA + M G R P+V T L+S
Sbjct: 560 AVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLR--PNVPTCNSLLS 617
Query: 250 SYCK 253
++ +
Sbjct: 618 TFLR 621
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ + G+ G V +A + M RP+V N +++ RV +A LL+ M G
Sbjct: 580 LVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALG 639
Query: 235 FRCPPDVYTYTILIS 249
R P + TYT+L+S
Sbjct: 640 LR--PSLQTYTLLLS 652
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 129 FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNE 187
F N VT + F + V+ + +EMS+RG G VT +T LI+ L + G +
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT---LIQGLFQAGDCDM 448
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A F +M PD+ Y+++++ LC+ G KA + E ++ + PD+YTY I+
Sbjct: 449 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS--KMEPDIYTYNIM 506
Query: 248 ISSYCKYG 255
I CK G
Sbjct: 507 IEGMCKAG 514
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ L + G + +AL F +++ + PD+Y YN++I +C+ G L +
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQ 257
L G + P+V YT +IS +C+ G++
Sbjct: 527 SLKGVK--PNVIIYTTMISGFCRKGLK 551
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI L +EA+A RM C+PD++ Y V+N LC+ G+ + A LL+
Sbjct: 185 TVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLK 244
Query: 229 QMELPGFRCPPDVYTYTILISSYCKY 254
+ME + DV YT +I + C Y
Sbjct: 245 KMEKG--KIEADVVIYTTIIDALCNY 268
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ M RG +L T TV + L + G ++ AL+ +M++ + DV Y +I+
Sbjct: 207 LIDRMVARGCQPDLFTYGTV---VNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIID 263
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
ALC N N A L +M+ G R P+V TY LI C YG
Sbjct: 264 ALCNYKNVNDALNLFTEMDNKGIR--PNVVTYNSLIRCLCNYG 304
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI +EG + EA + M + PD++ Y+ +IN C ++A+ + E M
Sbjct: 327 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 386
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C P+V TY LI +CK
Sbjct: 387 --ISKDCFPNVVTYNTLIKGFCK 407
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L VN+AL F M RP+V YN +I LC G ++ A LL M
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-- 316
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+ P+V T++ LI ++ K G
Sbjct: 317 IERKINPNVVTFSALIDAFVKEG 339
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
RM+ R D+Y+YN++IN CR A +L +M G+ PD+ T + L++ YC
Sbjct: 105 RMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYE--PDIVTLSSLLNGYC 161
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+ F M Q R P + +N +++A+ ++ F+ L E+M+ R D+Y+Y
Sbjct: 61 LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQ--NLRISYDLYSY 118
Query: 245 TILISSYCK 253
ILI+ +C+
Sbjct: 119 NILINCFCR 127
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+A +M +P+ +N +I+ L ++A L+++M G C PD++TY
Sbjct: 166 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARG--CQPDLFTY 223
Query: 245 TILISSYCKYG 255
+++ CK G
Sbjct: 224 GTVVNGLCKRG 234
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ V+ WD +S +G V T +I +GL EA A F MK+ P+
Sbjct: 512 KAGKVEDGWDLFCSLSLKGVKPNVIIYTT--MISGFCRKGLKEEADALFREMKEDGTLPN 569
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
YN +I A R G+ + L+++M GF D T +++I+
Sbjct: 570 SGTYNTLIRARLRDGDKAASAELIKEMRSCGF--VGDASTISMVIN 613
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I V +EG +EA+ + M + PDV+ YN +IN LC G ++A+ +L+ M
Sbjct: 246 TFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLM 305
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C PDV TY LI+ +CK
Sbjct: 306 VTKG--CLPDVVTYNTLINGFCK 326
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V +AL F M++ D+ YN+VI+ +C++GN A L + G + PDV +Y
Sbjct: 397 VEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLK--PDVVSY 454
Query: 245 TILISSYCK 253
T +IS +C+
Sbjct: 455 TTMISGFCR 463
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
TV+ LI + V +A+ +M++ RPDV YN +I+ C++G N A L ++M
Sbjct: 141 TVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRM 200
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G R D TY L++ C G
Sbjct: 201 ERDGVR--ADAVTYNSLVAGLCCSG 223
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTV---TCLIKVLGEEGLVNEALATFYRMKQ 197
F +GN V D + +M G ++V +T+ +C I GLVN+A+ F RM++
Sbjct: 149 FCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKI------GLVNDAVELFDRMER 202
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R D YN ++ LC G ++ A L+ M + P+V T+T +I + K G
Sbjct: 203 DGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDI--VPNVITFTAVIDVFVKEG 258
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
AL+ +M +F PDV + +IN C+ A L+ +ME GFR PDV Y +
Sbjct: 123 ALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFR--PDVVIYNTI 180
Query: 248 ISSYCKYGM 256
I CK G+
Sbjct: 181 IDGSCKIGL 189
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
++ F+ M+ D+Y+YN+VIN LCR F A ++ +M G+ PDV T + L
Sbjct: 88 VISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYE--PDVVTVSSL 145
Query: 248 ISSYCK 253
I+ +C+
Sbjct: 146 INGFCQ 151
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + V +EM++RG G+ +T +T+ I+ + G + A F RM
Sbjct: 324 FCKSKRVDEGTKLFREMAQRGLVGDTITYNTI---IQGYFQAGRPDAAQEIFSRMDS--- 377
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RP++ Y++++ LC KA L E M+ D+ TY I+I CK G
Sbjct: 378 RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIEL--DITTYNIVIHGMCKIG 430
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
VF + +EM+RR V T LI L G V+EA M C
Sbjct: 253 VFVKEGKFSEAMKLYEEMTRRCVDPDVFT--YNSLINGLCMHGRVDEAKQMLDLMVTKGC 310
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDV YN +IN C+ ++ L +M G D TY +I Y + G
Sbjct: 311 LPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGL--VGDTITYNTIIQGYFQAG 363
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
++VT +T+ ++ L + G + +A+ RM Q C PDV Y ++I A CR A
Sbjct: 203 DVVTYNTI---LRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAM 259
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL++M G C PDV TY +L++ CK G
Sbjct: 260 KLLDEMRDRG--CTPDVVTYNVLVNGICKEG 288
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 12/125 (9%)
Query: 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191
E TC++ G+ A L EM RG V T V L+ + +EG ++EA+
Sbjct: 247 EATCRDSGVGHA--------MKLLDEMRDRGCTPDVVTYNV--LVNGICKEGRLDEAIKF 296
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
M C+P+V +N+++ ++C G + A LL M GF P V T+ ILI+
Sbjct: 297 LNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF--SPSVVTFNILINFL 354
Query: 252 CKYGM 256
C+ G+
Sbjct: 355 CRKGL 359
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ + V A+ M+ C PDV YNV++N +C+ G ++A L M
Sbjct: 241 TYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM 300
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
P C P+V T+ I++ S C G
Sbjct: 301 --PSSGCQPNVITHNIILRSMCSTG 323
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 150 GLW----DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
G W L +M R+G V T + LI L +GL+ A+ +M Q C+P+
Sbjct: 323 GRWMDAEKLLADMLRKGFSPSVVTFNI--LINFLCRKGLLGRAIDILEKMPQHGCQPNSL 380
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+YN +++ C+ ++A LE+M G C PD+ TY ++++ CK G
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRG--CYPDIVTYNTMLTALCKDG 428
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G+G + T +I + G +N AL+ RM PDV YN ++ +LC G
Sbjct: 165 GSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLK 221
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+A +L++M C PDV TYTILI + C+
Sbjct: 222 QAMEVLDRM--LQRDCYPDVITYTILIEATCR 251
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
++L+ M RG ++VT +T ++ L ++G V +A+ ++ C P + YN VI
Sbjct: 400 EYLERMVSRGCYPDIVTYNT---MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVI 456
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ L + G KA LL++M + PD TY+ L+ + G
Sbjct: 457 DGLAKAGKTGKAIKLLDEMRAKDLK--PDTITYSSLVGGLSREG 498
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ FL+ M GN + T LI+ G +A ++ PDV YNV+I
Sbjct: 122 FKFLENMVYHGNVPDIIPCTT--LIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMI 179
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ C+ G N A +L++M + PDV TY ++ S C G
Sbjct: 180 SGYCKAGEINNALSVLDRMSV-----SPDVVTYNTILRSLCDSG 218
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+E ++ A+ RM C PD+ YN ++ ALC+ G A +L Q+ G C P
Sbjct: 391 KEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG--CSPV 448
Query: 241 VYTYTILISSYCKYG 255
+ TY +I K G
Sbjct: 449 LITYNTVIDGLAKAG 463
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T + L+ L EG V+EA+ F+ ++ RP+ +N ++ LC+ ++A L
Sbjct: 484 TITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLV 543
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
M G C P+ +YTILI GM
Sbjct: 544 FMINRG--CKPNETSYTILIEGLAYEGM 569
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 8/143 (5%)
Query: 114 KATEFYHWVERFFH--FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE-LVTTS 170
K ++ER + + VT M + V+ + L ++S +G L+T +
Sbjct: 394 KMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYN 453
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
TV I L + G +A+ M+ +PD Y+ ++ L R G ++A +
Sbjct: 454 TV---IDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEF 510
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
E G R P+ T+ ++ CK
Sbjct: 511 ERMGIR--PNAVTFNSIMLGLCK 531
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ +M +RG +LVT TV + L + G ++ AL+ +M++ + DV YN +I+
Sbjct: 210 LVDQMVQRGCQPDLVTYGTV---VNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIID 266
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ + + A L +M+ G R PDV+TY+ LIS C YG
Sbjct: 267 GLCKYKHMDDALNLFTEMDNKGIR--PDVFTYSSLISCLCNYG 307
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 129 FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNE 187
F N VT + F + V+ + +EMS+RG LV T T T LI + +
Sbjct: 395 FPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRG---LVGNTVTYTTLIHGFFQARDCDN 451
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A F +M P++ YN++++ LC+ G KA + E ++ PD+YTY I+
Sbjct: 452 AQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTME--PDIYTYNIM 509
Query: 248 ISSYCKYG 255
I CK G
Sbjct: 510 IEGMCKAG 517
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R ++ L D + EM + + T T T LI L +EA+A +M Q C+PD
Sbjct: 168 RISDAVALVDQMVEMGYKPD-----TFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPD 222
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+ Y V+N LC+ G+ + A LL++ME + DV Y +I CKY
Sbjct: 223 LVTYGTVVNGLCKRGDIDLALSLLKKMEKG--KIEADVVIYNTIIDGLCKY 271
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + G + +A+ F +++ PD+Y YN++I +C+ G L +
Sbjct: 470 TYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNL 529
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L G P+V Y +IS +C+ G
Sbjct: 530 SLKGV--SPNVIAYNTMISGFCRKG 552
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI +EG + EA + M + PD++ Y+ +IN C ++A+ + E M
Sbjct: 330 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 389
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C P+V TY+ LI +CK
Sbjct: 390 --ISKDCFPNVVTYSTLIKGFCK 410
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++AL F M RPDV+ Y+ +I+ LC G ++ A LL M + P+V T+
Sbjct: 274 MDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM--IERKINPNVVTF 331
Query: 245 TILISSYCKYG 255
+ LI ++ K G
Sbjct: 332 SALIDAFVKEG 342
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++A+ F M + R P + +N +++A+ ++ F L EQM+ G D+YTY
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGI--SHDLYTY 121
Query: 245 TILISSYCK 253
+I I+ +C+
Sbjct: 122 SIFINCFCR 130
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+A +M + +PD + + +I+ L ++A L++QM G C PD+ TY
Sbjct: 169 ISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG--CQPDLVTY 226
Query: 245 TILISSYCKYG 255
+++ CK G
Sbjct: 227 GTVVNGLCKRG 237
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
ALA +M + PD+ + ++N C + A L++QM G++ PD +T+T L
Sbjct: 137 ALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYK--PDTFTFTTL 194
Query: 248 I 248
I
Sbjct: 195 I 195
Score = 37.7 bits (86), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+M+ D+Y Y++ IN CR + A +L +M G+ PD+ T + L++ YC
Sbjct: 108 QMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYE--PDIVTLSSLLNGYC 164
Score = 37.7 bits (86), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I+ + + G V + F + P+V AYN +I+ CR G+ +A LL++M
Sbjct: 505 TYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKM 564
Query: 231 ELPGFRCP-PDVYTYTILISSYCKYG 255
+ G P P+ TY LI + + G
Sbjct: 565 KEDG---PLPNSGTYNTLIRARLRDG 587
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
M +F G KG F + +RR + + + LI L + G NE FY MK+
Sbjct: 524 MDCMFKAGEPEKGRAMFEEIKARRF---VPDARSYSILIHGLIKAGFANETYELFYSMKE 580
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C D AYN+VI+ C+ G NKA LLE+M+ GF P V TY +I K
Sbjct: 581 QGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFE--PTVVTYGSVIDGLAK 634
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
+N+A E++ W ER H + + +V AR N L L EMS G G V
Sbjct: 78 VNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVN--- 134
Query: 172 VTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
TC+ VLG + + E M++F+ RP AY +I A V + + L +Q
Sbjct: 135 -TCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQ 193
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M+ G+ P V+ +T LI + K G
Sbjct: 194 MQELGYE--PTVHLFTTLIRGFAKEG 217
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L + +NEAL F MK+ +C P+ Y ++IN LC+V FNKA ++M
Sbjct: 694 TWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEM 753
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ G + P +YT +IS K G
Sbjct: 754 QKQGMK--PSTISYTTMISGLAKAG 776
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 6/143 (4%)
Query: 114 KATEFYHWVERFFHFFHNE-VTCKEMGIVFARGNNVKGLWDFLKEM--SRRGNGELVTTS 170
KA VE F H N V C G G +D + +R G + +
Sbjct: 285 KANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVI 344
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
C++ L + G V+EAL F MK+ P++ YN++I+ LCR G + A L + M
Sbjct: 345 AYNCILTCLRKMGKVDEALKVFEEMKK-DAAPNLSTYNILIDMLCRAGKLDTAFELRDSM 403
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
+ G P+V T I++ CK
Sbjct: 404 QKAGLF--PNVRTVNIMVDRLCK 424
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LI+ +EG V+ AL+ MK D+ YNV I++ +VG + A
Sbjct: 202 TVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFF 261
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
++E G + PD TYT +I CK
Sbjct: 262 HEIEANGLK--PDEVTYTSMIGVLCK 285
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++ A +F+H +E +EVT M V + N + + + + + N + T
Sbjct: 254 VDMAWKFFHEIEAN-GLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEK--NRRVPCTYA 310
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+I G G +EA + R + P V AYN ++ L ++G ++A + E+M+
Sbjct: 311 YNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK 370
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
P++ TY ILI C+ G
Sbjct: 371 KDA---APNLSTYNILIDMLCRAG 391
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V W F E+ NG T T +I VL + ++EA+ F +++ R
Sbjct: 248 FGKVGKVDMAWKFFHEI--EANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRV 305
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P YAYN +I G F++A LLE+ G P V Y +++ K G
Sbjct: 306 PCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKG--SIPSVIAYNCILTCLRKMG 357
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V + L+EM +G T T +I L + ++EA F K R
Sbjct: 597 FCKCGKVNKAYQLLEEMKTKGFEP--TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIE 654
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+V Y+ +I+ +VG ++A +LE++ G P++YT+ L+ + K
Sbjct: 655 LNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGL--TPNLYTWNSLLDALVK 704
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
A F +K R PD +Y+++I+ L + G N+ L M+ G C D Y I+I
Sbjct: 538 AMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQG--CVLDTRAYNIVID 595
Query: 250 SYCKYG 255
+CK G
Sbjct: 596 GFCKCG 601
Score = 38.1 bits (87), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
FA+ V L EM S + ++V + I G+ G V+ A F+ ++
Sbjct: 213 FAKEGRVDSALSLLDEMKSSSLDADIVLYNVC---IDSFGKVGKVDMAWKFFHEIEANGL 269
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD Y +I LC+ ++A + E +E R P Y Y +I Y G
Sbjct: 270 KPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKN--RRVPCTYAYNTMIMGYGSAG 322
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 168 TTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
T S V T LIK G + + M C PD+ N ++ + + G K R +
Sbjct: 480 TNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAM 539
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
E E+ R PD +Y+ILI K G
Sbjct: 540 FE--EIKARRFVPDARSYSILIHGLIKAG 566
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
TV ++ L + ++EA A F M C PD + +I+ L +VG + A + E+M
Sbjct: 414 TVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKM 473
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
C + YT LI ++ +G
Sbjct: 474 --LDSDCRTNSIVYTSLIKNFFNHG 496
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LIK L +EAL M++ +P+++ Y V+I++LC F KAR LL
Sbjct: 322 TVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELL 381
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
QM G P+V TY LI+ YCK GM
Sbjct: 382 GQMLEKGLM--PNVITYNALINGYCKRGM 408
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 25/188 (13%)
Query: 89 NIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVE---RFFHFFHNEVTCKEM------- 138
++ + V + P+ + + L A F HW+ R+ H ++ + +
Sbjct: 80 SLKSMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYV 139
Query: 139 GIVFA------RGNNVKG----LWDFLKEMSRRGNGELVTTSTVTC---LIKVLGEEGLV 185
G+VF + + G + D ++M++ EL + C L+ L GLV
Sbjct: 140 GVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLV 199
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+E + M + + P++Y YN ++N C++GN +A + ++ G PD +TYT
Sbjct: 200 DEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGL--DPDFFTYT 257
Query: 246 ILISSYCK 253
LI YC+
Sbjct: 258 SLIMGYCQ 265
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++A+ +M + + PDV YN +I+ CR GNF+ A LL M G PD +TY
Sbjct: 443 VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGL--VPDQWTY 500
Query: 245 TILISSYCK 253
T +I S CK
Sbjct: 501 TSMIDSLCK 509
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+ F +MK C P V Y V+I +LC ++A L+++ME G + P+++TY
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIK--PNIHTY 361
Query: 245 TILISSYC 252
T+LI S C
Sbjct: 362 TVLIDSLC 369
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T ST T LI L ++G + A + F +M +PD + Y I CR G A ++
Sbjct: 601 TVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMM 660
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M G PD++TY+ LI Y G
Sbjct: 661 AKMRENGV--SPDLFTYSSLIKGYGDLG 686
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTS-TVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R N + L M+ RG LV T T +I L + V EA F ++Q
Sbjct: 473 CRSGNFDSAYRLLSLMNDRG---LVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVN 529
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+V Y +I+ C+ G ++A +LE+M C P+ T+ LI C G
Sbjct: 530 PNVVMYTALIDGYCKAGKVDEAHLMLEKM--LSKNCLPNSLTFNALIHGLCADG 581
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L +G + EA +M + +P V ++I+ L + G+F+ A +QM
Sbjct: 569 TFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQM 628
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G + PD +TYT I +YC+ G
Sbjct: 629 LSSGTK--PDAHTYTTFIQTYCREG 651
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ V+ D + ++G V T LI + G V+EA +M C
Sbjct: 507 LCKSKRVEEACDLFDSLEQKGVNPNVVMYTA--LIDGYCKAGKVDEAHLMLEKMLSKNCL 564
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ +N +I+ LC G +A L E+M G + P V T TILI K G
Sbjct: 565 PNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQ--PTVSTDTILIHRLLKDG 616
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ +KEM G + T TV LI L + +A +M + P+V YN +IN
Sbjct: 344 NLVKEMEETGIKPNIHTYTV--LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALIN 401
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C+ G A ++E ME + P+ TY LI YCK
Sbjct: 402 GYCKRGMIEDAVDVVELME--SRKLSPNTRTYNELIKGYCK 440
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + ++ A F M CR + AY +I+ LC ++A L +M
Sbjct: 255 TYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKM 314
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
+ C P V TYT+LI S C
Sbjct: 315 K--DDECFPTVRTYTVLIKSLC 334
Score = 38.1 bits (87), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI + G++ +A+ M+ + P+ YN +I C+ N +KA +L +M
Sbjct: 395 TYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKM 453
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ PDV TY LI C+ G
Sbjct: 454 --LERKVLPDVVTYNSLIDGQCRSG 476
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
YN ++N+L R G ++ + + ME+ + P++YTY +++ YCK G
Sbjct: 185 CYNTLLNSLARFGLVDEMKQVY--MEMLEDKVCPNIYTYNKMVNGYCKLG 232
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T I+ EG + +A +M++ PD++ Y+ +I +G N A +L++M
Sbjct: 639 TYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRM 698
Query: 231 ELPGFRCPPDVYTYTILISSYC--KYGMQ 257
G C P +T+ LI KYG Q
Sbjct: 699 RDTG--CEPSQHTFLSLIKHLLEMKYGKQ 725
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V+ +F++EMS + +G T L+ L + G V A+ M Q
Sbjct: 269 FCKEGRVEDALNFIQEMSNQ-DGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYD 327
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
PDVY YN VI+ LC++G +A +L+QM C P+ TY LIS+ CK
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEVLDQM--ITRDCSPNTVTYNTLISTLCK 377
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ F M+ C PD + YN++I++LC G ++A +L+QMEL G C V TY L
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG--CARSVITYNTL 476
Query: 248 ISSYCK 253
I +CK
Sbjct: 477 IDGFCK 482
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
F + N + + EM G V+ ++VT LI L + V +A +M
Sbjct: 480 FCKANKTREAEEIFDEMEVHG----VSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEG 535
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD Y YN ++ CR G+ KA +++ M G C PD+ TY LIS CK G
Sbjct: 536 QKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG--CEPDIVTYGTLISGLCKAG 589
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMK-QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+V ++ +EG V +AL M Q PD Y +N ++N LC+ G+ A +++
Sbjct: 261 SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDV 320
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M G+ PDVYTY +IS CK G
Sbjct: 321 MLQEGY--DPDVYTYNSVISGLCKLG 344
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T LI L +E V EA + PDV +N +I LC N A L E
Sbjct: 365 TVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFE 424
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
+M G C PD +TY +LI S C G
Sbjct: 425 EMRSKG--CEPDEFTYNMLIDSLCSKG 449
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M + +PDV +NV+I ALCR A +LE M P + PD T+T ++ Y +
Sbjct: 179 KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDM--PSYGLVPDEKTFTTVMQGYIE 236
Query: 254 YG 255
G
Sbjct: 237 EG 238
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 139 GIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198
G+ R + V + +EM R G T LI L +G ++EAL +M+
Sbjct: 409 GLCLTRNHRVA--MELFEEM--RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS 464
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C V YN +I+ C+ +A + ++ME+ G + TY LI CK
Sbjct: 465 GCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGV--SRNSVTYNTLIDGLCK 517
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQ 229
T T +++ EEG ++ AL +M +F C + NV+++ C+ G A F+ E
Sbjct: 226 TFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM 285
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
GF PD YT+ L++ CK G
Sbjct: 286 SNQDGFF--PDQYTFNTLVNGLCKAG 309
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ LK+M G V T LI + EA F M+ + YN +I+
Sbjct: 456 NMLKQMELSGCARSVITYNT--LIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLID 513
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LC+ A L++QM + G + PD YTY L++ +C+ G
Sbjct: 514 GLCKSRRVEDAAQLMDQMIMEGQK--PDKYTYNSLLTHFCRGG 554
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G + +A M C PD+ Y +I+ LC+ G A LL +++ G P Y
Sbjct: 554 GDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAY 613
Query: 243 TYTI 246
I
Sbjct: 614 NPVI 617
Score = 38.5 bits (88), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 136 KEMGIVFARGNNVKGLWDFLKEM--SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF- 192
+E+ + R + + L++M SR G TST LI+ + L +E L+
Sbjct: 87 EEILLRLGRSGSFDDMKKILEDMKSSRCEMG----TSTFLILIESYAQFELQDEILSVVD 142
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ + +F +PD + YN ++N L + +M + G + PDV T+ +LI + C
Sbjct: 143 WMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIK--PDVSTFNVLIKALC 200
Query: 253 K 253
+
Sbjct: 201 R 201
Score = 34.7 bits (78), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
P+ Y ++ L R G+F+ + +LE M+ RC T+ ILI SY ++ +Q
Sbjct: 81 PEPALYEEILLRLGRSGSFDDMKKILEDMK--SSRCEMGTSTFLILIESYAQFELQ 134
>sp|Q9SAJ5|PP133_ARATH Pentatricopeptide repeat-containing protein At1g79540
OS=Arabidopsis thaliana GN=At1g79540 PE=2 SV=1
Length = 780
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ + N W L+E+ + G V + LI + G+ +A+ +F RMK+F C
Sbjct: 101 MLSEDNGCDLYWQTLEEL--KSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDC 158
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
RPDV+ YNV++ + R F F + E+ C P++YT+ IL+ K G
Sbjct: 159 RPDVFTYNVILRVMMREEVFFMLAFAVYN-EMLKCNCSPNLYTFGILMDGLYKKG 212
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI+ L + G + +AL M PD Y YN VI ALC G + R L Q+E+
Sbjct: 342 TILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSL--QLEM 399
Query: 233 PGFRCPPDVYTYTILISSYCKYGM 256
PD T+TILI S C+ G+
Sbjct: 400 SETESFPDACTHTILICSMCRNGL 423
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 37/122 (30%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI + GLV EA F +++ C P V +N +I+ LC+ G +AR LL +M
Sbjct: 410 THTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKM 469
Query: 231 E----------------------------LPGFR---------CPPDVYTYTILISSYCK 253
E L +R PD+ +Y +LI+ +C+
Sbjct: 470 EVGRPASLFLRLSHSGNRSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCR 529
Query: 254 YG 255
G
Sbjct: 530 AG 531
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
E G + +A PD+ +YNV+IN CR G+ + A LL ++L G PD
Sbjct: 494 ESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGL--SPD 551
Query: 241 VYTYTILISSYCKYGMQ 257
TY LI+ + G +
Sbjct: 552 SVTYNTLINGLHRVGRE 568
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
++ ++ L M +G T +IK L GL+ E + M +
Sbjct: 348 LSKAGKIEDALKLLSSMPSKGISP--DTYCYNAVIKALCGRGLLEEGRSLQLEMSETESF 405
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD + ++I ++CR G +A + ++E G C P V T+ LI CK G
Sbjct: 406 PDACTHTILICSMCRNGLVREAEEIFTEIEKSG--CSPSVATFNALIDGLCKSG 457
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L + G ++A FY M+ PD A+N +++ C++G +A LL
Sbjct: 235 TYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLF 294
Query: 231 ELPGF 235
E GF
Sbjct: 295 EKDGF 299
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 31/227 (13%)
Query: 34 ASTTKTQNPFTIESVADVLKS---IPRFFFQSPRS--IGRQTGFRHRTPLKQRILKKEAD 88
+ +T+N E +DV KS + +F + P+ ++G R L +R+L + D
Sbjct: 66 SHNDRTKNSKYDEFASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGD 125
Query: 89 NIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNV 148
G YR F+ W + + H+ K M + ++
Sbjct: 126 A--------GNLGYR--------------FFVWAAKQPRYCHSIEVYKSMVKILSKMRQF 163
Query: 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
+W ++EM R+ N +L+ L++ +V +A+ M +F PD Y +
Sbjct: 164 GAVWGLIEEM-RKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFG 222
Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+++ALC+ G+ A L E M + R P ++ +T L+ +C+ G
Sbjct: 223 CLLDALCKHGSVKDAAKLFEDMRM---RFPVNLRYFTSLLYGWCRVG 266
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+A + +D L++M RRG + T LI+ L + + EA+ F M+++ C
Sbjct: 297 YANAGKMADAYDLLRDMRRRGFEP--NANCYTVLIQALCKVDRMEEAMKVFVEMERYECE 354
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
DV Y +++ C+ G +K +L+ M G P TY ++ ++ K
Sbjct: 355 ADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLM--PSELTYMHIMVAHEK 404
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ G + +A M++ P+ Y V+I ALC+V +A + +ME
Sbjct: 291 TNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEME- 349
Query: 233 PGFRCPPDVYTYTILISSYCKYG 255
+ C DV TYT L+S +CK+G
Sbjct: 350 -RYECEADVVTYTALVSGFCKWG 371
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
E L +M+Q PD+ YNVVI C++G +A L +ME G P V T+
Sbjct: 409 EECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGL--SPGVDTFV 466
Query: 246 ILISSYCKYG 255
I+I+ G
Sbjct: 467 IMINGLASQG 476
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L M RG + + LI L +EG EA++ + +M + C+P++ Y+V+++
Sbjct: 349 LLSSMEERGYH--LNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDG 406
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
LCR G N+A+ +L +M G C P+ YTY+ L+ + K G+
Sbjct: 407 LCREGKPNEAKEILNRMIASG--CLPNAYTYSSLMKGFFKTGL 447
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK L + V+ A+ F M + +C PD Y Y +++ LC+ ++A LL++M+ G
Sbjct: 193 VIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEG 252
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P Y +LI CK G
Sbjct: 253 --CSPSPVIYNVLIDGLCKKG 271
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T L+ L +E ++EA+ M+ C P YNV+I+ LC+ G+ + L++ M
Sbjct: 224 TYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNM 283
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L G C P+ TY LI C G
Sbjct: 284 FLKG--CVPNEVTYNTLIHGLCLKG 306
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
KEM + G +V LI L G V EA+ + +M +PD AY+ +I LC
Sbjct: 456 KEMDKTGCSRNKFCYSV--LIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLC 513
Query: 216 RVGNFNKARFLLEQM---ELPGFRCPPDVYTYTILISSYC 252
+G+ + A L +M E P + PDV TY IL+ C
Sbjct: 514 GIGSMDAALKLYHEMLCQEEP--KSQPDVVTYNILLDGLC 551
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
+G L T + L+K + GL EA+ + M + C + + Y+V+I+ LC VG
Sbjct: 425 ASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVK 484
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A + +M G + PD Y+ +I C G
Sbjct: 485 EAMMVWSKMLTIGIK--PDTVAYSSIIKGLCGIG 516
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
+ LW ++M+ +G + +V L+ L EG NEA RM C P
Sbjct: 376 GKAEEAMSLW---RKMAEKGCKPNIVVYSV--LVDGLCREGKPNEAKEILNRMIASGCLP 430
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ Y Y+ ++ + G +A + ++M+ G C + + Y++LI C G
Sbjct: 431 NAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTG--CSRNKFCYSVLIDGLCGVG 481
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRM---KQFRCRPDVYAYNVVINALCRVGNFNKARF 225
T + +IK L G ++ AL ++ M ++ + +PDV YN++++ LC + ++A
Sbjct: 502 TVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVD 561
Query: 226 LLEQMELPGFRCPPDVYT 243
LL M G C PDV T
Sbjct: 562 LLNSMLDRG--CDPDVIT 577
Score = 38.5 bits (88), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+ ++N+VI ALC++ ++A + M P +C PD YTY L+ CK
Sbjct: 185 PNGLSFNLVIKALCKLRFVDRAIEVFRGM--PERKCLPDGYTYCTLMDGLCK 234
Score = 37.7 bits (86), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
C P+ YN +I+ LC G +KA LLE+M +C P+ TY LI+ K
Sbjct: 288 CVPNEVTYNTLIHGLCLKGKLDKAVSLLERM--VSSKCIPNDVTYGTLINGLVK 339
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L +G +++A++ RM +C P+ Y +IN L + A LL M
Sbjct: 294 TYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSM 353
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G+ + + Y++LIS K G
Sbjct: 354 EERGYHL--NQHIYSVLISGLFKEG 376
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L ++ +A+ M++ + + Y+V+I+ L + G +A L +M G
Sbjct: 333 LINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKG 392
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P++ Y++L+ C+ G
Sbjct: 393 --CKPNIVVYSVLVDGLCREG 411
>sp|Q94JX6|PP391_ARATH Pentatricopeptide repeat-containing protein At5g18390,
mitochondrial OS=Arabidopsis thaliana GN=At5g18390 PE=2
SV=2
Length = 459
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 5/144 (3%)
Query: 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172
N + F++W + + +E+ A + +W LK+M ++ T+
Sbjct: 92 NDSLRFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLD--ISGETL 149
Query: 173 TCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+I+ G+ G V++A+ F + K C+ V YN +++ALC V F+ A L+ +M
Sbjct: 150 CFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYALIRRMI 209
Query: 232 LPGFRCPPDVYTYTILISSYCKYG 255
G + PD TY IL++ +C G
Sbjct: 210 RKGLK--PDKRTYAILVNGWCSAG 231
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ +K +FL EMSRRG + LI+ L G + A +M +
Sbjct: 227 WCSAGKMKEAQEFLDEMSRRGFNPPARGRDL--LIEGLLNAGYLESAKEMVSKMTKGGFV 284
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELP-GFRCPPDVYTYTILISSYCKYG 255
PD+ +N++I A+ + G + F +E D+ TY LI + K G
Sbjct: 285 PDIQTFNILIEAISKSG---EVEFCIEMYYTACKLGLCVDIDTYKTLIPAVSKIG 336
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G V T LI + + G ++EA + +P Y +I +CR G F+ A
Sbjct: 317 GLCVDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRNGMFDDA 376
Query: 224 RFLLEQMELPGFRCPPDVYTYTILIS 249
M++ PP+ YT+LI+
Sbjct: 377 FSFFSDMKVKAH--PPNRPVYTMLIT 400
>sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890
OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
Length = 701
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+T T ++ L E GLVN A+ F +M +P++ + +I+ LC+ G+ +A +LE+
Sbjct: 253 ATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEE 312
Query: 230 MELPGFRCPPDVYTYTILISSYCKYG 255
M G++ P+VYT+T LI CK G
Sbjct: 313 MVRNGWK--PNVYTHTALIDGLCKRG 336
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRC 200
+ ++K ++ L+EM R NG T T LI L + G +A F ++ +
Sbjct: 297 LCKKGSIKQAFEMLEEMVR--NGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTY 354
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+P+V+ Y +I C+ N+A L +M+ G P+V TYT LI+ +CK G
Sbjct: 355 KPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLF--PNVNTYTTLINGHCKAG 407
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I +E +N A F RMK+ P+V Y +IN C+ G+F +A L+ M
Sbjct: 360 TYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLM 419
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
GF P++YTY I S CK
Sbjct: 420 GDEGFM--PNIYTYNAAIDSLCK 440
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T T T +I +EG ++ AL F+ MK+ C PD + Y +I+ LC+ ++A
Sbjct: 528 GLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEA 587
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
L E M G PP+V T L YCK
Sbjct: 588 CKLYEAMIDRGLS-PPEV-TRVTLAYEYCK 615
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQME 231
T LI L ++G + +A M + +P+VY + +I+ LC+ G KA R L+ +
Sbjct: 291 TSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVR 350
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
++ P+V+TYT +I YCK
Sbjct: 351 SDTYK--PNVHTYTSMIGGYCK 370
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI+ ++ +N+ALA F RM + D+ N++I A CR ++ L + +
Sbjct: 465 TYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLV 524
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G P TYT +IS YCK G
Sbjct: 525 VSLGL--IPTKETYTSMISCYCKEG 547
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
M + G ++ T+ C++++ E GL+ A F M PD +Y +++ R
Sbjct: 171 MDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRD 230
Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
G +A L M GF PD T T+++++ C+ G+
Sbjct: 231 GKIQEADRWLTGMIQRGF--IPDNATCTLILTALCENGL 267
Score = 37.7 bits (86), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 22/81 (27%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ ++G+EG + P++Y YN I++LC+ +A LL +
Sbjct: 415 LMNLMGDEGFM----------------PNIYTYNAAIDSLCKKSRAPEAYELLNK----A 454
Query: 235 FRC--PPDVYTYTILISSYCK 253
F C D TYTILI CK
Sbjct: 455 FSCGLEADGVTYTILIQEQCK 475
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
EMS RG V + + + V+G +G + EA M Q PD +++ AL
Sbjct: 207 EMSVRG----VVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTAL 262
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C G N+A + +M GF+ P++ +T LI CK G
Sbjct: 263 CENGLVNRAIWYFRKMIDLGFK--PNLINFTSLIDGLCKKG 301
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G L T + L+ L G V AL F +++ + PD+Y YN++I +C+ G
Sbjct: 460 DGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVED 519
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
L + L G + P+V TYT ++S +C+ G++
Sbjct: 520 GWDLFCSLSLKGVK--PNVVTYTTMMSGFCRKGLK 552
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
+LVT V + L + G ++ AL+ +M+Q + P V YN +I+ALC N N A
Sbjct: 220 DLVTYGIV---VNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDAL 276
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L +M+ G R P+V TY LI C YG
Sbjct: 277 NLFTEMDNKGIR--PNVVTYNSLIRCLCNYG 305
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 129 FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNE 187
F N VT + F + V + +EMS+RG LV T T T LI + +
Sbjct: 393 FPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRG---LVGNTVTYTTLIHGFFQARECDN 449
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A F +M PD+ Y+++++ LC G A + E ++ + PD+YTY I+
Sbjct: 450 AQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRS--KMEPDIYTYNIM 507
Query: 248 ISSYCKYG 255
I CK G
Sbjct: 508 IEGMCKAG 515
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F GN + + +M G + T LI L +EA+A RM C+
Sbjct: 161 FCHGNRISDAVSLVGQMVEMGYQP--DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQ 218
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
PD+ Y +V+N LC+ G+ + A LL++ME + P V Y +I + C Y
Sbjct: 219 PDLVTYGIVVNGLCKRGDIDLALSLLKKMEQG--KIEPGVVIYNTIIDALCNY 269
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI +EG + EA + M + PD++ Y+ +IN C ++A+ + E M
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 387
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C P+V TY LI +CK
Sbjct: 388 --ISKDCFPNVVTYNTLIKGFCK 408
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
VN+AL F M RP+V YN +I LC G ++ A LL M + P+V T+
Sbjct: 272 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM--IERKINPNVVTF 329
Query: 245 TILISSYCKYG 255
+ LI ++ K G
Sbjct: 330 SALIDAFVKEG 340
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A++ +M + +PD + +N +I+ L R ++A L+++M + G C PD+ TY
Sbjct: 167 ISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKG--CQPDLVTY 224
Query: 245 TILISSYCKYG 255
I+++ CK G
Sbjct: 225 GIVVNGLCKRG 235
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI ++ ALA +M + PD+ N ++N C + A L+ QM
Sbjct: 118 TYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQM 177
Query: 231 ELPGFRCPPDVYTYTILI 248
G++ PD +T+ LI
Sbjct: 178 VEMGYQ--PDSFTFNTLI 193
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+ F M + R P + ++ +++A+ ++ F+ L EQM+ G ++YTY
Sbjct: 62 LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGI--SHNLYTY 119
Query: 245 TILISSYCK 253
+ILI+ +C+
Sbjct: 120 SILINCFCR 128
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ V+ WD +S +G V T T ++ +GL EA A F MK+ PD
Sbjct: 513 KAGKVEDGWDLFCSLSLKGVKPNVVTYTT--MMSGFCRKGLKEEADALFREMKEEGPLPD 570
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQM 230
YN +I A R G+ + L+ +M
Sbjct: 571 SGTYNTLIRAHLRDGDKAASAELIREM 597
Score = 34.3 bits (77), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+M+ ++Y Y+++IN CR + A +L +M G+ PD+ T L++ +C
Sbjct: 106 QMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYE--PDIVTLNSLLNGFC 162
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I+ + + G V + F + +P+V Y +++ CR G +A L +M
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREM 562
Query: 231 ELPGFRCP-PDVYTYTILISSYCKYG 255
+ G P PD TY LI ++ + G
Sbjct: 563 KEEG---PLPDSGTYNTLIRAHLRDG 585
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI ++EA F M C P+V YN +I C+ ++ L +M
Sbjct: 363 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREM 422
Query: 231 ELPGFRCPPDVYTYTILISSY 251
G + TYT LI +
Sbjct: 423 SQRGL--VGNTVTYTTLIHGF 441
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T LI L +EG ++ A + M + +P+++ YN ++N LC+ GN +A L+ +
Sbjct: 458 TYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 517
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
E G D TYT L+ +YCK G
Sbjct: 518 EAAGLN--ADTVTYTTLMDAYCKSG 540
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 157 EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
EM R+G L T T LI + G + A FY M PDV Y +I+ C+
Sbjct: 341 EMIRQGI--LPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQ 398
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+G+ +A L +M G PD T+T LI+ YCK G
Sbjct: 399 IGDMVEAGKLFHEMFCKGLE--PDSVTFTELINGYCKAG 435
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+V +YN+VI+ +C++G +A LL MEL G+ PDV +Y+ +++ YC++G
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGY--TPDVISYSTVVNGYCRFG 295
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + +++ F EM R V T T +I + G + EA F+ M
Sbjct: 361 FCKRGDIRAASKFFYEMHSRDITPDVLT--YTAIISGFCQIGDMVEAGKLFHEMFCKGLE 418
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD + +IN C+ G+ A + M G C P+V TYT LI CK G
Sbjct: 419 PDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG--CSPNVVTYTTLIDGLCKEG 470
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRG--NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
+ R + +W ++ M R+G + S + L ++ + EA F M +
Sbjct: 291 YCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICK----LAEAEEAFSEMIRQG 346
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y +I+ C+ G+ A +M PDV TYT +IS +C+ G
Sbjct: 347 ILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDI--TPDVLTYTAIISGFCQIG 400
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I + + G + EA M+ PDV +Y+ V+N CR G +K L+E M+ G
Sbjct: 252 VIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG 311
Query: 235 FRCPPDVYTYTILISSYCK 253
+ P+ Y Y +I C+
Sbjct: 312 LK--PNSYIYGSIIGLLCR 328
Score = 34.3 bits (77), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A A + M PD Y ++ C+ N +A FL ++M+ GF V TY++L
Sbjct: 615 ATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVS--VSTYSVL 672
Query: 248 ISSYCK 253
I + K
Sbjct: 673 IKGFLK 678
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
NN+K K+M RG G T L+K + + EA F MK V
Sbjct: 610 NNLKAATAIYKDMCSRGVGP--DGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVS 667
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
Y+V+I + F +AR + +QM G +++ +
Sbjct: 668 TYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDF 706
>sp|Q9LMH5|PPR42_ARATH Putative pentatricopeptide repeat-containing protein At1g13800
OS=Arabidopsis thaliana GN=At1g13800 PE=3 SV=1
Length = 883
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 13/111 (11%)
Query: 146 NNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
N++K ++ K+M RR E+V T T L+K E L E MK F +PDV
Sbjct: 712 NDLKKVYALFKDMKRR---EIVPDVVTYTVLLKNKPERNLSRE-------MKAFDVKPDV 761
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ Y V+I+ C++G+ +A+ + +QM G PD YT LI+ CK G
Sbjct: 762 FYYTVLIDWQCKIGDLGEAKRIFDQMIESG--VDPDAAPYTALIACCCKMG 810
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 11/142 (7%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++KA FY +E +E +G G D E R L +
Sbjct: 517 LDKAEAFYESLEH---------KSRENDASMVKGFCAAGCLDHAFERFIRLEFPLPKSVY 567
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
T + E+ +++A RM + P+ Y +I A CRV N KAR E
Sbjct: 568 FTLFTSLCAEKDYISKAQDLLDRMWKLGVEPEKSMYGKLIGAWCRVNNVRKAREFFEI-- 625
Query: 232 LPGFRCPPDVYTYTILISSYCK 253
L + PD++TYTI+I++YC+
Sbjct: 626 LVTKKIVPDLFTYTIMINTYCR 647
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 52/140 (37%), Gaps = 35/140 (25%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ R N K + ++M RR V T +V L+ E + E M+ F
Sbjct: 645 YCRLNEPKQAYALFEDMKRRDVKPDVVTYSV--LLNSDPELDMKRE-------MEAFDVI 695
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQM--------------------------ELPGF 235
PDV Y ++IN C + + K L + M E+ F
Sbjct: 696 PDVVYYTIMINRYCHLNDLKKVYALFKDMKRREIVPDVVTYTVLLKNKPERNLSREMKAF 755
Query: 236 RCPPDVYTYTILISSYCKYG 255
PDV+ YT+LI CK G
Sbjct: 756 DVKPDVFYYTVLIDWQCKIG 775
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
PD++ Y ++IN CR+ +A L E M+ + PDV TY++L++S
Sbjct: 633 PDLFTYTIMINTYCRLNEPKQAYALFEDMKRRDVK--PDVVTYSVLLNS 679
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
LG+ G V EA+ F M PDV Y +I C G + A L+ +E+ G
Sbjct: 406 LGKLGKVEEAIELFREMTGKGIAPDVINYTTLIGGCCLQGKCSDAFDLM--IEMDGTGKT 463
Query: 239 PDVYTYTILISSYCKYGM 256
PD+ Y +L G+
Sbjct: 464 PDIVIYNVLAGGLATNGL 481
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI + G + EA F RM + +PDV Y +I CR G KA L+++M
Sbjct: 800 TALIACCCKMGYLKEAKMIFDRMIESGVKPDVVPYTALIAGCCRNGFVLKAVKLVKEMLE 859
Query: 233 PGFR 236
G +
Sbjct: 860 KGIK 863
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 144 RGNNVKG--LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
RG+ +G + D LK + ++ T L+K + +EA+ F+R R
Sbjct: 119 RGDEGRGFSVMDLLKAIGEMEQSLVLLIRVSTALVKAYANLDMFDEAIDIFFRAYYSLGR 178
Query: 202 -PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
PD+ A N +I+ + G + ++E G D +TY +++ +
Sbjct: 179 APDIKALNFLISRMIASGRSDMVVGFFWEIERLGL--DADAHTYVLVVQA 226
>sp|Q9LMY5|PPR41_ARATH Putative pentatricopeptide repeat-containing protein At1g13630
OS=Arabidopsis thaliana GN=At1g13630 PE=2 SV=3
Length = 826
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
GN GL LK+M RG EL + + ++ L + G ++EAL+ F +MK PD+
Sbjct: 383 GNIDMGLV-LLKDMLSRGF-ELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDL 440
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
AY++VI+ LC++G F+ A +L ++M R P+ T+ L+ C+ GM
Sbjct: 441 VAYSIVIHGLCKLGKFDMALWLYDEM--CDKRILPNSRTHGALLLGLCQKGM 490
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+GE + +I + G + EAL F + + P V +N +I C+ N +
Sbjct: 504 SGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAE 563
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
AR +L+ ++L G P V +YT L+ +Y G
Sbjct: 564 ARKILDVIKLYGL--APSVVSYTTLMDAYANCG 594
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G V+ A + F + + P VY++N++IN LC VG+ +A L M G PD
Sbjct: 278 GFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVE--PDSV 335
Query: 243 TYTILISSYCKYGM 256
TY IL + GM
Sbjct: 336 TYNILAKGFHLLGM 349
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L G + EAL M + PD YN++ +G + A ++ M G
Sbjct: 305 LINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKG 364
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PDV TYTIL+ C+ G
Sbjct: 365 L--SPDVITYTILLCGQCQLG 383
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD YN +I LCRV + + A LE M+ TY ILI S C YG
Sbjct: 660 PDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASS--ATYNILIDSLCVYG 711
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G+++ A M PDV Y +++ C++GN + LL+ M GF +
Sbjct: 348 GMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNS-II 406
Query: 243 TYTILISSYCKYG 255
++++S CK G
Sbjct: 407 PCSVMLSGLCKTG 419
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDVYAYNV 209
+WD KE+ + T C + L E F R +++ P V ++N
Sbjct: 217 MWDVYKEIKDKNEHTYSTVVDGLCRQQKL-------EDAVLFLRTSEWKDIGPSVVSFNS 269
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+++ C++G + A+ + G P VY++ ILI+ C G
Sbjct: 270 IMSGYCKLGFVDMAKSFFCTVLKCGL--VPSVYSHNILINGLCLVG 313
Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R ++ G + FL+ M R +++T LI L G + +A + Y +++
Sbjct: 672 LCRVKHLSGAFVFLEIMKSRNLD--ASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVS 729
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+AY +I A C G+ A L Q+ GF + Y+ +I+ C+
Sbjct: 730 LSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVS--IRDYSAVINRLCR 779
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+ + V+ L++ L + G + EAL R+ F P+++ YN +I++LC+ F++A L
Sbjct: 331 SEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLF 390
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++M G R P DV TY+ILI +C+ G
Sbjct: 391 DRMGKIGLR-PNDV-TYSILIDMFCRRG 416
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G + T T L+ L GL+ +A+ F M ++ +P+ YNV+I C G+ +
Sbjct: 500 GKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMS 559
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
KA L++M G PD Y+Y LI C G +
Sbjct: 560 KAFEFLKEMTEKGI--VPDTYSYRPLIHGLCLTGQAS 594
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ F M RPDVY Y VI +LC + + ++A+ ++ ME G C ++ Y +L
Sbjct: 211 AMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATG--CDVNIVPYNVL 268
Query: 248 ISSYCK 253
I CK
Sbjct: 269 IDGLCK 274
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L T+T LI+ +G + EA RM PD Y +IN LCR + KA
Sbjct: 782 GLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKA 841
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L M G R PD Y LI C G
Sbjct: 842 IELWNSMTEKGIR--PDRVAYNTLIHGCCVAG 871
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+EA F RM + RP+ Y+++I+ CR G + A L +M G + VY Y
Sbjct: 384 HEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLS--VYPYN 441
Query: 246 ILISSYCKYG 255
LI+ +CK+G
Sbjct: 442 SLINGHCKFG 451
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI + G ++ AL+ M + VY YN +IN C+ G+ + A + +M
Sbjct: 404 TYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEM 463
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ P V TYT L+ YC G
Sbjct: 464 --INKKLEPTVVTYTSLMGGYCSKG 486
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T L+ +G +N+AL ++ M P +Y + +++ L R G A L
Sbjct: 471 TVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLF 530
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M + P+ TY ++I YC+ G
Sbjct: 531 NEM--AEWNVKPNRVTYNVMIEGYCEEG 556
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 149 KGLWDFLKEMSRRG--NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
K + LKEM RG +++ TS +I + G EA + M C P+
Sbjct: 664 KLFFGLLKEMHDRGLKPDDVIYTS----MIDAKSKTGDFKEAFGIWDLMINEGCVPNEVT 719
Query: 207 YNVVINALCRVGNFNKARFLLEQME 231
Y VIN LC+ G N+A L +M+
Sbjct: 720 YTAVINGLCKAGFVNEAEVLCSKMQ 744
Score = 38.5 bits (88), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T +I+ EEG +++A M + PD Y+Y +I+ LC G ++A+ ++
Sbjct: 544 TYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDG- 602
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
L C + YT L+ +C+ G
Sbjct: 603 -LHKGNCELNEICYTGLLHGFCREG 626
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I+ L E ++ A M+ C ++ YNV+I+ LC+ +A + + +L
Sbjct: 231 TGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGI--KKDL 288
Query: 233 PGFRCPPDVYTYTILISSYCK 253
G PDV TY L+ CK
Sbjct: 289 AGKDLKPDVVTYCTLVYGLCK 309
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD Y +I+A + G+F +A + + M G C P+ TYT +I+ CK G
Sbjct: 679 KPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEG--CVPNEVTYTAVINGLCKAG 731
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%)
Query: 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G+G T T +I L V +A+ + M + RPD AYN +I+ C G
Sbjct: 815 GDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMG 874
Query: 222 KARFLLEQMELPGF 235
KA L +M G
Sbjct: 875 KATELRNEMLRQGL 888
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N VT M + ++ ++FLKEM+ +G + T + LI L G +EA
Sbjct: 541 NRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGI--VPDTYSYRPLIHGLCLTGQASEAKV 598
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
+ + C + Y +++ CR G +A + ++M G D+ Y +LI
Sbjct: 599 FVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGV--DLDLVCYGVLIDG 656
Query: 251 YCKY 254
K+
Sbjct: 657 SLKH 660
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
P+V + +++ L + +F A L M G R PDVY YT +I S C+
Sbjct: 190 PEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIR--PDVYIYTGVIRSLCE 239
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVT-TSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + V+ +EMS+RG LV+ T T LI+ + G V++A F +M F
Sbjct: 340 FCKAKRVEDGMKLFREMSQRG---LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI 396
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD++ YN+++ LC G KA + E M+ D+ TYT +I CK G
Sbjct: 397 SPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM--DLDIVTYTTVIRGMCKTG 449
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T+ L+ V++A++ +M + +PD+ AYN +I++LC+ N A +++
Sbjct: 157 TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI 216
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
E G R P+V TYT L++ C
Sbjct: 217 ERKGIR--PNVVTYTALVNGLC 236
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + +V +F +M G + T + L+ L + G + +AL F M++
Sbjct: 375 FFQAGDVDKAQEFFSQMDFFGISPDIWTYNI--LLGGLCDNGELEKALVIFEDMQKREMD 432
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
D+ Y VI +C+ G +A L + L G + PD+ TYT ++S C G+
Sbjct: 433 LDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLK--PDIVTYTTMMSGLCTKGL 485
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ + G V EA F M + PD+ Y+ +IN LC ++A + + M
Sbjct: 262 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 321
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G C DV +Y LI+ +CK
Sbjct: 322 VSKG--CLADVVSYNTLINGFCK 342
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 105 PQKVTLGI--------NKATEFYHWVERFFHFFHNEVTCKEMGIV--FARGNNVKGLWDF 154
P +VT+G N+ ++ V++ + I+ + V +DF
Sbjct: 153 PDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDF 212
Query: 155 LKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
KE+ R+G V T T L+ L ++A M + + P+V Y+ +++A
Sbjct: 213 FKEIERKGIRPNVVTYTA--LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF 270
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ G +A+ L E+M PD+ TY+ LI+ C
Sbjct: 271 VKNGKVLEAKELFEEM--VRMSIDPDIVTYSSLINGLC 306
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 60/161 (37%), Gaps = 41/161 (25%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N +T + F + V + +EM R + ++VT S+ LI L ++EA
Sbjct: 259 NVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSS---LINGLCLHDRIDEAN 315
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCR--------------------------------- 216
F M C DV +YN +IN C+
Sbjct: 316 QMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 375
Query: 217 --VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
G+ +KA+ QM+ G PD++TY IL+ C G
Sbjct: 376 FQAGDVDKAQEFFSQMDFFGI--SPDIWTYNILLGGLCDNG 414
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I L + VN+A F +++ RP+V Y ++N LC ++ A LL M
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKK- 254
Query: 235 FRCPPDVYTYTILISSYCKYG 255
+ P+V TY+ L+ ++ K G
Sbjct: 255 -KITPNVITYSALLDAFVKNG 274
Score = 38.5 bits (88), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+N+A+ F M + R P + +N +++A+ ++ ++ L ++ME+ G R D+YT+
Sbjct: 66 LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIR--NDLYTF 123
Query: 245 TILISSYC 252
I+I+ +C
Sbjct: 124 NIVINCFC 131
Score = 38.1 bits (87), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+ AL+ +M + PD ++N CR + A L+++M G++ PD+ Y
Sbjct: 136 VSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYK--PDIVAY 193
Query: 245 TILISSYCK 253
+I S CK
Sbjct: 194 NAIIDSLCK 202
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCK-EMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS 170
++KA EF+ ++ FF + T +G + G K L F R + ++VT +
Sbjct: 381 VDKAQEFFSQMD-FFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYT 439
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
TV I+ + + G V EA + F + +PD+ Y +++ LC G ++ L +M
Sbjct: 440 TV---IRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKM 496
Query: 231 ELPGF 235
+ G
Sbjct: 497 KQEGL 501
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M+ R D+Y +N+VIN C + A +L +M G+ PD T L++ +C+
Sbjct: 110 KMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYE--PDRVTIGSLVNGFCR 167
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173
KA E ++ + + F H T + + + + + L +M R G +
Sbjct: 22 KALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDM-RENVGNHMLEGVYV 80
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
+K G +G V EA+ F RM + C P V++YN +++ L G F++A + +M
Sbjct: 81 GAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDR 140
Query: 234 GFRCPPDVYTYTILISSYCK 253
G PDVY++TI + S+CK
Sbjct: 141 GI--TPDVYSFTIRMKSFCK 158
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V + +VK L ++ +RG L T I+ L + G ++ A+ + +
Sbjct: 225 VLCKKGDVKECEKLLDKVIKRG--VLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGP 282
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+PDV YN +I LC+ F +A L +M G PD YTY LI+ YCK GM
Sbjct: 283 KPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLE--PDSYTYNTLIAGYCKGGM 336
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LIK L +G++ EA M + P+V +N+++N LC++G + A L++ M G
Sbjct: 397 LIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKG 456
Query: 235 FRCPPDVYTYTILISSY 251
+ PD++T+ ILI Y
Sbjct: 457 YF--PDIFTFNILIHGY 471
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
+ + T+ M + C P+++ +N+++ +LCR ++A LLE+M+ PD T+
Sbjct: 514 DVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVN--PDAVTFGT 571
Query: 247 LISSYCKYG 255
LI +CK G
Sbjct: 572 LIDGFCKNG 580
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG + T LI L EG N ALA F +P+V YN +I L G +
Sbjct: 350 NGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILE 409
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A L +M G P+V T+ IL++ CK G
Sbjct: 410 AAQLANEMSEKGL--IPEVQTFNILVNGLCKMG 440
Score = 38.9 bits (89), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-FRCRPDVYAYNVVI 211
L+EM + N + VT T LI + G ++ A F +M++ ++ YN++I
Sbjct: 553 LLEEMKNKSVNPDAVTFGT---LIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIII 609
Query: 212 NALCRVGNFNKARFLLEQMELPGFRC-PPDVYTYTILISSYCKYG 255
+A N A L ++M RC PD YTY +++ +CK G
Sbjct: 610 HAFTEKLNVTMAEKLFQEMV---DRCLGPDGYTYRLMVDGFCKTG 651
Score = 38.1 bits (87), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EAL MK PD + +I+ C+ G+ + A L +ME ++ TY
Sbjct: 547 LDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKME-EAYKVSSSTPTY 605
Query: 245 TILISSY 251
I+I ++
Sbjct: 606 NIIIHAF 612
Score = 38.1 bits (87), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
F + ++ G + ++M V++ST T +I E+ V A F M
Sbjct: 576 FCKNGDLDGAYTLFRKMEEAYK---VSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRC 632
Query: 200 CRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYC 252
PD Y Y ++++ C+ GN N +FLLE ME GF P + T +I+ C
Sbjct: 633 LGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMME-NGF--IPSLTTLGRVINCLC 683
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T + ++ VL + G ++A + RM+ PDVY++ + + + C+ + A LL
Sbjct: 110 TVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLL 169
Query: 228 EQMELPGFRCPPDVYTYTILISSY 251
M G C +V Y ++ +
Sbjct: 170 NNMSSQG--CEMNVVAYCTVVGGF 191
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
EA +M PD Y YN +I C+ G A ++ GF PD +TY
Sbjct: 304 EAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGF--VPDQFTYRS 361
Query: 247 LISSYCKYG 255
LI C G
Sbjct: 362 LIDGLCHEG 370
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 112 INKATEFYHWVERFFHFFHNEV-TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS 170
+++A+ Y +E+ F +V TC + F R +L M G ++T
Sbjct: 415 VDEASMIYDVMEQ--KGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMME--GGVKLSTV 470
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ T LI V +EG V EA F M +P+ YNV+I A C+ G +AR L M
Sbjct: 471 SYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANM 530
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
E G PD YTYT LI C
Sbjct: 531 EANGM--DPDSYTYTSLIHGEC 550
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + + G+ LK M + +G + T T L+++ + G +++A F M++
Sbjct: 269 YVKQRDFSGVEGVLKVMKK--DGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIE 326
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
DV+ Y +I+ CR GN +A L +++ G P YTY LI CK G
Sbjct: 327 SDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGL--SPSSYTYGALIDGVCKVG 378
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 10/130 (7%)
Query: 130 HNEVT---CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186
+N+VT E+ + + ++ + L+D EM RG V T LI +G +
Sbjct: 292 YNKVTYTLLMELSVKNGKMSDAEKLFD---EMRERGIESDV--HVYTSLISWNCRKGNMK 346
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
A F + + P Y Y +I+ +C+VG A L+ +M+ G V +
Sbjct: 347 RAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVV--FNT 404
Query: 247 LISSYCKYGM 256
LI YC+ GM
Sbjct: 405 LIDGYCRKGM 414
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V+ + NV+ EMS +G T V +I ++G + EA M+
Sbjct: 478 VYCKEGNVEEAKRLFVEMSSKGVQPNAITYNV--MIYAYCKQGKIKEARKLRANMEANGM 535
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD Y Y +I+ C N ++A L +M L G + TYT++IS K G
Sbjct: 536 DPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGL--DQNSVTYTVMISGLSKAG 588
Score = 38.1 bits (87), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+ EM +G +T LI +G+V+EA + M+Q + DV+ N + +
Sbjct: 386 LMNEMQSKGVN--ITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASC 443
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R+ +++A+ L +M G + +YT LI YCK G
Sbjct: 444 FNRLKRYDEAKQWLFRMMEGGVKLST--VSYTNLIDVYCKEG 483
Score = 34.3 bits (77), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 140 IVFARGNNVKGLWDFLKEMSRR--GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197
IVF + D E+ RR +G +T ++T +++ L G V ++
Sbjct: 193 IVFLVAAKKRRRIDLCLEIFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSV 252
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY---TYTILISSYCKY 254
+P+ Y YN +INA + +F+ +L+ M+ G VY TYT+L+ K
Sbjct: 253 KGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGV-----VYNKVTYTLLMELSVKN 307
Query: 255 G 255
G
Sbjct: 308 G 308
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
+T S LIK G+ G+V E L + +MK+ P +Y YN ++N L + A +
Sbjct: 185 MTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERV 244
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
E ME R PD+ TY +I YCK G
Sbjct: 245 FEVME--SGRIKPDIVTYNTMIKGYCKAG 271
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R +G + + + LI LG+ G V+EA F M + C D Y YN +I+A +
Sbjct: 424 RFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKV 483
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILIS 249
++A L ++ME C VYTYTIL+S
Sbjct: 484 DEAIALFKRMEEEE-GCDQTVYTYTILLS 511
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+EM +G V + +I L +EG +NE F M + +P+V Y V+I+
Sbjct: 316 QEMDEKGIQ--VPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYA 373
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ G+ A LL +M GF+ PDV TY+++++ CK G
Sbjct: 374 KSGSVEDAIRLLHRMIDEGFK--PDVVTYSVVVNGLCKNG 411
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 51/132 (38%), Gaps = 39/132 (29%)
Query: 158 MSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC-- 215
M R+G+ V TV LI + G V +A+ +RM +PDV Y+VV+N LC
Sbjct: 353 MIRKGSKPNVAIYTV--LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKN 410
Query: 216 ---------------------------------RVGNFNKARFLLEQMELPGFRCPPDVY 242
+ G ++A L E+M G C D Y
Sbjct: 411 GRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKG--CTRDSY 468
Query: 243 TYTILISSYCKY 254
Y LI ++ K+
Sbjct: 469 CYNALIDAFTKH 480
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
+W +KE NG T T L+ L V+ A F M+ R +PD+ YN +
Sbjct: 209 VWRKMKE-----NGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTM 263
Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
I C+ G KA L ME G D TY +I +
Sbjct: 264 IKGYCKAGQTQKAMEKLRDMETRGHE--ADKITYMTMIQA 301
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + + + L++M RG+ T +I+ + +A + M + +
Sbjct: 267 YCKAGQTQKAMEKLRDMETRGHE--ADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQ 324
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+A+++VI LC+ G N+ + E M G + P+V YT+LI Y K G
Sbjct: 325 VPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSK--PNVAIYTVLIDGYAKSG 376
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI +EGLV AL + M+ C+P+VY+Y ++++ C++G ++A +L +M
Sbjct: 391 TYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEM 450
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
G + P+ + LIS++CK
Sbjct: 451 SADGLK--PNTVGFNCLISAFCK 471
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + ++ L EMS +G T CLI +E + EA+ F M + C+
Sbjct: 434 FCKLGKIDEAYNVLNEMS--ADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCK 491
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PDVY +N +I+ LC V A +LL M G + TY LI+++ + G
Sbjct: 492 PDVYTFNSLISGLCEVDEIKHALWLLRDMISEGV--VANTVTYNTLINAFLRRG 543
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEA 188
+E+T + R V ++M R G+ S ++C LI L G+V EA
Sbjct: 563 DEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHA----PSNISCNILINGLCRSGMVEEA 618
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+ M PD+ +N +IN LCR G + +++ G PPD T+ L+
Sbjct: 619 VEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGI--PPDTVTFNTLM 676
Query: 249 SSYCKYG 255
S CK G
Sbjct: 677 SWLCKGG 683
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMKQFRC 200
F N + L++M++ G V S + LI L + VNEAL M C
Sbjct: 227 FCAVNEIDSALSLLRDMTKHG---CVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGC 283
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD +N VI LC+ N+A ++ +M + GF PD TY L++ CK G
Sbjct: 284 VPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGF--APDDITYGYLMNGLCKIG 336
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST 171
++KA + + R H N ++C + R V+ +F KEM RG+ + T
Sbjct: 580 VDKARSLFEKMLRDGHAPSN-ISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVT-- 636
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
LI L G + + L F +++ PD +N +++ LC+ G A LL++
Sbjct: 637 FNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGI 696
Query: 232 LPGFRCPPDVYTYTILISS 250
GF P+ T++IL+ S
Sbjct: 697 EDGF--VPNHRTWSILLQS 713
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
LI G +++A A M + PDV YN +I + G A +L M
Sbjct: 359 LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNK 418
Query: 234 GFRCPPDVYTYTILISSYCKYG 255
G C P+VY+YTIL+ +CK G
Sbjct: 419 G--CKPNVYSYTILVDGFCKLG 438
Score = 38.5 bits (88), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ L + G V+ A FYR+ +P++ +N +I+ G + A+ +L M +
Sbjct: 328 LMNGLCKIGRVDAAKDLFYRIP----KPEIVIFNTLIHGFVTHGRLDDAKAVLSDM-VTS 382
Query: 235 FRCPPDVYTYTILISSYCKYGM 256
+ PDV TY LI Y K G+
Sbjct: 383 YGIVPDVCTYNSLIYGYWKEGL 404
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A FY M + P ++ + VV+ A C V + A LL M G C P+ Y L
Sbjct: 201 AANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHG--CVPNSVIYQTL 258
Query: 248 ISSYCK 253
I S K
Sbjct: 259 IHSLSK 264
Score = 34.7 bits (78), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP-PDVYT 243
+NEA RM PD Y ++N LC++G + A+ L +R P P++
Sbjct: 303 INEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLF-------YRIPKPEIVI 355
Query: 244 YTILISSYCKYG 255
+ LI + +G
Sbjct: 356 FNTLIHGFVTHG 367
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 91/217 (41%), Gaps = 32/217 (14%)
Query: 41 NP-FTIESVADVLKSIPRF-FFQSPRSIGRQTGFRHRTPLKQRILKKEADNIANNVLVLG 98
NP + +E+V+ +L+ RF + + GFR ++LK + DN AN
Sbjct: 292 NPGYVVENVSSILR---RFKWGHAAEEALHNFGFRMDAYQANQVLK-QMDNYAN------ 341
Query: 99 PAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEM 158
A F++W++R F H+ T M R + L EM
Sbjct: 342 ----------------ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEM 385
Query: 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
R +G T T LI G + EA+ F +M++ C PD Y +I+ + G
Sbjct: 386 VR--DGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAG 443
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ A + ++M+ G PD +TY+++I+ K G
Sbjct: 444 FLDIAMDMYQRMQEAGLS--PDTFTYSVIINCLGKAG 478
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT + + R N +K + +M G + VT T LI + + G ++ A+
Sbjct: 393 NTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCT---LIDIHAKAGFLDIAM 449
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
+ RM++ PD + Y+V+IN L + G+ A L E+ G C P++ T+ I+I+
Sbjct: 450 DMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLF--CEMVGQGCTPNLVTFNIMIA 507
Query: 250 SYCK 253
+ K
Sbjct: 508 LHAK 511
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 60/160 (37%), Gaps = 6/160 (3%)
Query: 99 PAAYRNPQKVTLGINKATEFYHW---VERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFL 155
P + NP V ++ + W E H F + + V + +N F
Sbjct: 287 PRQHCNPGYVVENVSSILRRFKWGHAAEEALHNFGFRMDAYQANQVLKQMDNYANALGFF 346
Query: 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+ R+ G T T ++ LG E M + C+P+ YN +I++
Sbjct: 347 YWLKRQ-PGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYG 405
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R +A + QM+ G C PD TY LI + K G
Sbjct: 406 RANYLKEAMNVFNQMQEAG--CEPDRVTYCTLIDIHAKAG 443
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEAL 189
N VT M + A+ N + ++M G + VT S V ++VLG G + EA
Sbjct: 498 NLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIV---MEVLGHCGFLEEAE 554
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
F M++ PD Y ++++ + GN +KA + M G R P+V T L+S
Sbjct: 555 GVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLR--PNVPTCNSLLS 612
Query: 250 SYCK 253
++ +
Sbjct: 613 TFLR 616
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 150 GLWDFLKEMSRRGN--GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G D +M +R G T T + +I LG+ G + A F M C P++ +
Sbjct: 443 GFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTF 502
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS--SYCKY 254
N++I + N+ A L M+ GF+ PD TY+I++ +C +
Sbjct: 503 NIMIALHAKARNYETALKLYRDMQNAGFQ--PDKVTYSIVMEVLGHCGF 549
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
++ + LKEM G V T T+ I+VLG G +NEA RM C PDV
Sbjct: 238 DIDSVMGLLKEMETLGLKPNVYTFTIC--IRVLGRAGKINEAYEILKRMDDEGCGPDVVT 295
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
Y V+I+ALC + A+ + E+M+ R PD TY L+ +
Sbjct: 296 YTVLIDALCTARKLDCAKEVFEKMKTG--RHKPDRVTYITLLDRF 338
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ LG+ ++ + M+ +P+VY + + I L R G N+A +L++M
Sbjct: 225 TYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRM 284
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
+ G C PDV TYT+LI + C
Sbjct: 285 DDEG--CGPDVVTYTVLIDALC 304
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T LI L + G + EA F M + CRP+ YN++IN + G + A L
Sbjct: 890 TACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALF 949
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++M G R PD+ TY++L+ C G
Sbjct: 950 KRMVKEGVR--PDLKTYSVLVDCLCMVG 975
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
+ VT M +++ + L EM NG V LI L + V+EA
Sbjct: 502 DSVTYNMMMKCYSKVGEIDEAIKLLSEMME--NGCEPDVIVVNSLINTLYKADRVDEAWK 559
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
F RMK+ + +P V YN ++ L + G +A L E M G CPP+ T+ L
Sbjct: 560 MFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG--CPPNTITFNTLFDC 617
Query: 251 YCK 253
CK
Sbjct: 618 LCK 620
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G+ G + A A F RM + RPD+ Y+V+++ LC VG ++ ++++ G
Sbjct: 932 LINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESG 991
Query: 235 FRCPPDVYTYTILISSYCK 253
PDV Y ++I+ K
Sbjct: 992 LN--PDVVCYNLIINGLGK 1008
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T L+ LG+ G + EA+ F M Q C P+ +N + + LC+ A +L
Sbjct: 572 TVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKML 631
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+M G C PDV+TY +I K G
Sbjct: 632 FKMMDMG--CVPDVFTYNTIIFGLVKNG 657
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + K M + G + T +V L+ L G V+E L F +K+
Sbjct: 936 FGKAGEADAACALFKRMVKEGVRPDLKTYSV--LVDCLCMVGRVDEGLHYFKELKESGLN 993
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PDV YN++IN L + +A L +M+ PD+YTY LI + GM
Sbjct: 994 PDVVCYNLIINGLGKSHRLEEALVLFNEMK-TSRGITPDLYTYNSLILNLGIAGM 1047
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 39/143 (27%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V R + ++ LK M G G V T TV LI L ++ A F +MK R
Sbjct: 267 VLGRAGKINEAYEILKRMDDEGCGPDVVTYTV--LIDALCTARKLDCAKEVFEKMKTGRH 324
Query: 201 RPD-----------------------------------VYAYNVVINALCRVGNFNKARF 225
+PD V + ++++ALC+ GNF +A
Sbjct: 325 KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFD 384
Query: 226 LLEQMELPGFRCPPDVYTYTILI 248
L+ M G P+++TY LI
Sbjct: 385 TLDVMRDQGIL--PNLHTYNTLI 405
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV--LGEEGLVNEALATFYRMKQFRCRP 202
G++V L F K M +G + + V C + L + G EA FY +K P
Sbjct: 447 GDSVSALETFEK-MKTKG----IAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVP 501
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
D YN+++ +VG ++A LL +M G C PDV LI++ K
Sbjct: 502 DSVTYNMMMKCYSKVGEIDEAIKLLSEMMENG--CEPDVIVVNSLINTLYK 550
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDVYAYNVVI 211
+ KE+ G N ++V + + I LG+ + EAL F MK R PD+Y YN +I
Sbjct: 983 YFKELKESGLNPDVVCYNLI---INGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLI 1039
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
L G +A + +++ G P+V+T+ LI Y G
Sbjct: 1040 LNLGIAGMVEEAGKIYNEIQRAGLE--PNVFTFNALIRGYSLSG 1081
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI L E ++ A F ++K C PDV YN +++A + G ++ L ++M
Sbjct: 787 TYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEM 846
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
C + T+ I+IS K G
Sbjct: 847 ST--HECEANTITHNIVISGLVKAG 869
Score = 37.7 bits (86), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T I G+ G AL TF +MK P++ A N + +L + G +A+ +
Sbjct: 432 TAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIF 491
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++ G PD TY +++ Y K G
Sbjct: 492 YGLKDIGL--VPDSVTYNMMMKCYSKVG 517
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Query: 161 RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ G + +T L+ G+ G ++E + M C + +N+VI+ L + GN
Sbjct: 812 KSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNV 871
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ A L + + P TY LI K G
Sbjct: 872 DDALDLYYDL-MSDRDFSPTACTYGPLIDGLSKSG 905
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T L L + V AL ++M C PDV+ YN +I L + G +A
Sbjct: 608 TITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFH 667
Query: 229 QME 231
QM+
Sbjct: 668 QMK 670
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI +L + EA+ + RM RP + Y+ ++ L + + + LL++ME G
Sbjct: 194 LIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLG 253
Query: 235 FRCPPDVYTYTILI 248
+ P+VYT+TI I
Sbjct: 254 LK--PNVYTFTICI 265
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 14/86 (16%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T+T + K L +G + +A +M++F + Y+YN +I+ L K+RF E
Sbjct: 153 TNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLL------KSRFCTE 206
Query: 229 QME------LPGFRCPPDVYTYTILI 248
ME L GFR P + TY+ L+
Sbjct: 207 AMEVYRRMILEGFR--PSLQTYSSLM 230
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 5/140 (3%)
Query: 118 FYHWVERFFHFFHNEVTCKE-MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLI 176
FY WV F + + + K +G R + + LKE+ R +G ++ + LI
Sbjct: 95 FYLWVSNFDPVYAKDQSLKSVLGNALFRKGPLLLSMELLKEI--RDSGYRISDELMCVLI 152
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
G GL F ++ +P YN VI+AL + + + A +QM G
Sbjct: 153 GSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDG-- 210
Query: 237 CPPDVYTYTILISSYCKYGM 256
C PD +TY ILI CK G+
Sbjct: 211 CKPDRFTYNILIHGVCKKGV 230
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T +I L + ++ A F +M+ C+PD + YN++I+ +C+ G ++A L+
Sbjct: 179 STRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLV 238
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+QME G R P+V+TYTILI + G
Sbjct: 239 KQMEQEGNR--PNVFTYTILIDGFLIAG 264
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
R +K +D KEM G + + +T LI+ G + ++ F +MK+
Sbjct: 505 LCRAKEIKDAFDCFKEMLEWG----IEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENG 560
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
PD+YAYN I + C++ KA LL+ M G + PD +TY+ LI + + G ++
Sbjct: 561 LSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLK--PDNFTYSTLIKALSESGRES 617
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
FL EM RG + LVT +T V G+ V + ++ +PDV ++++IN
Sbjct: 447 FLTEMQDRGISPNLVTFNTFLSGYSVRGD---VKKVHGVLEKLLVHGFKPDVITFSLIIN 503
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LCR A ++M G P+ TY ILI S C G
Sbjct: 504 CLCRAKEIKDAFDCFKEMLEWGIE--PNEITYNILIRSCCSTG 544
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+LK R +G T LI + ++G+V+EA+ +M+Q RP+V+ Y ++I+
Sbjct: 200 YLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDG 259
Query: 214 LCRVGNFNKARFLLEQMELPG---------------FRCPPDVYTYTILI 248
G ++A LE M + FRC P + +L+
Sbjct: 260 FLIAGRVDEALKQLEMMRVRKLNPNEATIRTFVHGIFRCLPPCKAFEVLV 309
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
VY+YN VI+ LC+ A L +M+ G P++ T+ +S Y G
Sbjct: 425 VYSYNAVIDCLCKARRIENAAMFLTEMQDRGI--SPNLVTFNTFLSGYSVRG 474
Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + VK + LK M R G T + LIK L E G +EA F +++ C
Sbjct: 575 FCKMRKVKKAEELLKTMLRIGLKP--DNFTYSTLIKALSESGRESEAREMFSSIERHGCV 632
Query: 202 PDVYAYNVV 210
PD Y +V
Sbjct: 633 PDSYTKRLV 641
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F GN + + +M G T T T LI L +EA+A RM Q C+
Sbjct: 158 FCHGNRISDAVALVDQMVEMGYKP--DTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQ 215
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
PD+ Y V+N LC+ G+ + A LL +ME + +V Y+ +I S CKY
Sbjct: 216 PDLVTYGAVVNGLCKRGDTDLALNLLNKMEAA--KIEANVVIYSTVIDSLCKY 266
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + V + +EMS+RG LV T T T LI + + A F +M
Sbjct: 403 FCKAKRVDKGMELFREMSQRG---LVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGV 459
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P++ YN++++ LC+ G KA + E ++ PD+YTY I+I CK G
Sbjct: 460 HPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTME--PDIYTYNIMIEGMCKAG 512
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ M +RG +LVT V + L + G + AL +M+ + +V Y+ VI+
Sbjct: 205 LIDRMVQRGCQPDLVTYGAV---VNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVID 261
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+LC+ + + A L +ME G R P+V TY+ LIS C YG
Sbjct: 262 SLCKYRHEDDALNLFTEMENKGVR--PNVITYSSLISCLCNYG 302
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 150 GLWD----FLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G W L +M R+ N LVT S LI ++G + +A + M + P++
Sbjct: 302 GRWSDASRLLSDMIERKINPNLVTFSA---LIDAFVKKGKLVKAEKLYEEMIKRSIDPNI 358
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+ Y+ +IN C + +A+ +LE M C P+V TY LI+ +CK
Sbjct: 359 FTYSSLINGFCMLDRLGEAKQMLELMIRKD--CLPNVVTYNTLINGFCK 405
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
++AL F M+ RP+V Y+ +I+ LC G ++ A LL M + P++ T++
Sbjct: 270 DDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDM--IERKINPNLVTFS 327
Query: 246 ILISSYCKYG 255
LI ++ K G
Sbjct: 328 ALIDAFVKKG 337
Score = 38.5 bits (88), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+ F M Q R P + ++ +++A+ ++ F+ E+ME+ G ++YTY
Sbjct: 59 LDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGI--SHNLYTY 116
Query: 245 TILISSYCK 253
ILI+ +C+
Sbjct: 117 NILINCFCR 125
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
T L+ L + G + +A+ F +++ PD+Y YN++I +C+ G +
Sbjct: 465 TYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKW 514
Score = 35.0 bits (79), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
C++ LGE A M + C P+V YN +IN C+ +K L +M
Sbjct: 369 CMLDRLGE------AKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQR 422
Query: 234 GFRCPPDVYTYTILISSY 251
G + TYT LI +
Sbjct: 423 GL--VGNTVTYTTLIHGF 438
Score = 34.3 bits (77), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+M + PD+ N ++N C + A L++QM G++ PD T+T LI
Sbjct: 138 KMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYK--PDTVTFTTLI 190
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 168 TTSTVTCLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
T +++ LIK L +G V+ L F M + C PD Y Y +I+ LCR G ++A+ L
Sbjct: 155 TVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKL 214
Query: 227 LEQMELPGFRCPPDVYTYTILISSYC 252
+M C P V TYT LI+ C
Sbjct: 215 FTEMVEKD--CAPTVVTYTSLINGLC 238
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYR 194
C+ G V A GL FL EM +RG + T LI L G ++EA F
Sbjct: 167 CRNDGTVDA------GLKIFL-EMPKRGCDP--DSYTYGTLISGLCRFGRIDEAKKLFTE 217
Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
M + C P V Y +IN LC N ++A LE+M+ G P+V+TY+ L+ CK
Sbjct: 218 MVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIE--PNVFTYSSLMDGLCKD 275
Query: 255 G 255
G
Sbjct: 276 G 276
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ +L EE +N A + M++ P V + NV+I ALCR A + +E+P
Sbjct: 127 VLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKI-FLEMPK 185
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C PD YTY LIS C++G
Sbjct: 186 RGCDPDSYTYGTLISGLCRFG 206
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI L V+EA+ MK P+V+ Y+ +++ LC+ G +A L
Sbjct: 226 TVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELF 285
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK 253
E M G C P++ TYT LI+ CK
Sbjct: 286 EMMMARG--CRPNMVTYTTLITGLCK 309
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 147 NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
NV +L+EM +G V T + L+ L ++G +A+ F M CRP++
Sbjct: 242 NVDEAMRYLEEMKSKGIEPNVFT--YSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVT 299
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
Y +I LC+ +A LL++M L G + PD Y +IS +C
Sbjct: 300 YTTLITGLCKEQKIQEAVELLDRMNLQGLK--PDAGLYGKVISGFC 343
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G +++ + F M+R +VT +T LI L +E + EA+ RM +PD
Sbjct: 276 GRSLQAMELFEMMMARGCRPNMVTYTT---LITGLCKEQKIQEAVELLDRMNLQGLKPDA 332
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
Y VI+ C + F +A L++M L G P+ T+ I + +
Sbjct: 333 GLYGKVISGFCAISKFREAANFLDEMILGGI--TPNRLTWNIHVKT 376
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
+ + D ++M + G + T + LI G G V+EA+ F +++ C+PD+ +Y
Sbjct: 458 ISHIHDLFEKMKKDGPSPDIFTYNI--LIASFGRVGEVDEAINIFEELERSDCKPDIISY 515
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N +IN L + G+ ++A ++M+ G PDV TY+ L+ + K
Sbjct: 516 NSLINCLGKNGDVDEAHVRFKEMQEKGLN--PDVVTYSTLMECFGK 559
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G + T + LG+ ++ F +MK+ PD++ YN++I + RVG ++A
Sbjct: 437 GVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEA 496
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ E++E C PD+ +Y LI+ K G
Sbjct: 497 INIFEELERSD--CKPDIISYNSLINCLGKNG 526
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI LG+ G V+EA F M++ PDV Y+ ++ + A L E+M + G
Sbjct: 518 LINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKG 577
Query: 235 FRCPPDVYTYTILISSYCKYG 255
C P++ TY IL+ K G
Sbjct: 578 --CQPNIVTYNILLDCLEKNG 596
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 156 KEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
KEM +G N ++VT ST L++ G+ V A + F M C+P++ YN++++ L
Sbjct: 536 KEMQEKGLNPDVVTYST---LMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCL 592
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
+ G +A L +M+ G PD TYT+L
Sbjct: 593 EKNGRTAEAVDLYSKMKQQGL--TPDSITYTVL 623
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+++ L G EA+ ++ + D YN V +AL ++ + L E+M+ G
Sbjct: 413 MLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDG 472
Query: 235 FRCPPDVYTYTILISSYCKYG 255
PD++TY ILI+S+ + G
Sbjct: 473 --PSPDIFTYNILIASFGRVG 491
Score = 38.1 bits (87), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
L++VL + +V++A+ F RM + CRP+ Y Y++++N L G + ++E
Sbjct: 311 LMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVE 364
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T T +I+ +G G +EA+ F M +V YN ++ L + +KA + +M
Sbjct: 272 TYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRM 331
Query: 231 ELPGFRCPPDVYTYTILIS 249
G C P+ YTY++L++
Sbjct: 332 VETG--CRPNEYTYSLLLN 348
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190
N T K + + R + +D E+ RRG G + L+ L ++ +A
Sbjct: 202 NSFTYKCLLQAYLRSRDYSKAFDVYCEI-RRG-GHKLDIFAYNMLLDALAKD---EKACQ 256
Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
F MK+ CR D Y Y ++I + R+G ++A L +M G
Sbjct: 257 VFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGL 301
Score = 34.7 bits (78), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T CL++ ++A + +++ + D++AYN++++AL + KA + E M
Sbjct: 205 TYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKD---EKACQVFEDM 261
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ C D YTYTI+I + + G
Sbjct: 262 K--KRHCRRDEYTYTIMIRTMGRIG 284
>sp|Q9M316|PP292_ARATH Pentatricopeptide repeat-containing protein At3g61520,
mitochondrial OS=Arabidopsis thaliana GN=At3g61520 PE=2
SV=1
Length = 766
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRC------RPDVYAYNVVINALCRVGNFNKAR 224
T+ LI L + V+EAL F +M+ R + D +N +I+ LC+VG +A
Sbjct: 331 TLGILINTLCKSRRVDEALEVFEKMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAE 390
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LL +M+L RC P+ TY LI YC+ G
Sbjct: 391 ELLVRMKLEE-RCAPNAVTYNCLIDGYCRAG 420
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK-QFRC 200
F + + + + +++M R +G T +T +I G ++EAL F M +
Sbjct: 591 FGKHKDFESVERMMEQM--REDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKV 648
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
P+ YN++INA ++GNF +A L E+M++ R P+V TY L
Sbjct: 649 NPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVR--PNVETYNAL 693
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 160 RRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMK-QFRCRPDVYAYNVVINALCR 216
R +G ++ ++ LI L + G + EA RMK + RC P+ YN +I+ CR
Sbjct: 359 RTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCAPNAVTYNCLIDGYCR 418
Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
G A+ ++ +M+ + P+V T ++ C++
Sbjct: 419 AGKLETAKEVVSRMKEDEIK--PNVVTVNTIVGGMCRH 454
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+N A+ F M++ + +V Y +I+A C V N KA + E+M G C PD Y
Sbjct: 457 LNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAG--CSPDAKIY 514
Query: 245 TILISSYCK 253
LIS C+
Sbjct: 515 YALISGLCQ 523
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T CLI G + A RMK+ +P+V N ++ +CR N A M
Sbjct: 408 TYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDM 467
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
E G + +V TY LI + C
Sbjct: 468 EKEGVK--GNVVTYMTLIHACC 487
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
F +M + G G +VT T LI V +A+ + +M + C PD Y +I+
Sbjct: 463 FFMDMEKEGVKGNVVTYMT---LIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALIS 519
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
LC+V + A ++E+++ GF D+ Y +LI +C
Sbjct: 520 GLCQVRRDHDAIRVVEKLKEGGFSL--DLLAYNMLIGLFC 557
Score = 37.7 bits (86), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PD YN +I+ + +F ++EQM G P V TY +I +YC G
Sbjct: 578 KPDSITYNTLISFFGKHKDFESVERMMEQMREDGL--DPTVTTYGAVIDAYCSVG 630
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R ++ L D + EM R + T T T LI L +EA+A RM Q C+P+
Sbjct: 95 RISDAVALVDQMVEMGYRPD-----TITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPN 149
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+ Y VV+N LC+ G+ + A LL +ME + DV + +I S CKY
Sbjct: 150 LVTYGVVVNGLCKRGDIDLAFNLLNKMEAA--KIEADVVIFNTIIDSLCKY 198
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + V+ + +EMS RG LV T T T LI+ L +G + A F +M
Sbjct: 335 FCKSKRVEDGTELFREMSHRG---LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 391
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ Y+++++ LC G KA + + M+ + D+Y YT +I CK G
Sbjct: 392 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL--DIYIYTTMIEGMCKAG 444
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ M +RG LVT V + L + G ++ A +M+ + DV +N +I+
Sbjct: 137 LVDRMVQRGCQPNLVTYGVV---VNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIID 193
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+LC+ + + A L ++ME G R P+V TY+ LIS C YG
Sbjct: 194 SLCKYRHVDDALNLFKEMETKGIR--PNVVTYSSLISCLCSYG 234
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI +EG EA M + PD++ YN +IN C +KA+ + E M
Sbjct: 257 TFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM 316
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C PD+ TY LI +CK
Sbjct: 317 --VSKDCFPDLDTYNTLIKGFCK 337
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ L G + +AL F M++ + D+Y Y +I +C+ G + L +
Sbjct: 397 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 456
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
L G + P+V TY +IS C
Sbjct: 457 SLKGVK--PNVVTYNTMISGLC 476
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 147 NVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
+V + KEM +G +VT S+ LI L G ++A M + + P++
Sbjct: 200 HVDDALNLFKEMETKGIRPNVVTYSS---LISCLCSYGRWSDASQLLSDMIEKKINPNLV 256
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+N +I+A + G F +A L + M PD++TY LI+ +C +
Sbjct: 257 TFNALIDAFVKEGKFVEAEKLHDDMIKRSI--DPDIFTYNSLINGFCMH 303
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++AL F M+ RP+V Y+ +I+ LC G ++ A LL M + P++ T+
Sbjct: 201 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK--KINPNLVTF 258
Query: 245 TILISSYCKYG 255
LI ++ K G
Sbjct: 259 NALIDAFVKEG 269
Score = 37.7 bits (86), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I+ + + G V++ F + +P+V YN +I+ LC +A LL++M+
Sbjct: 434 TTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKE 493
Query: 233 PGFRCP-PDVYTYTILISSYCKYG 255
G P PD TY LI ++ + G
Sbjct: 494 DG---PLPDSGTYNTLIRAHLRDG 514
Score = 37.4 bits (85), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+M++ ++Y YN++IN CR + A LL +M G+ P + T + L++ YC
Sbjct: 35 KMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYE--PSIVTLSSLLNGYC 91
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+A +M + RPD + +I+ L ++A L+++M G C P++ TY
Sbjct: 96 ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG--CQPNLVTY 153
Query: 245 TILISSYCKYG 255
++++ CK G
Sbjct: 154 GVVVNGLCKRG 164
Score = 35.0 bits (79), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI ++ ALA +M + P + + ++N C + A L++QM
Sbjct: 47 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 106
Query: 231 ELPGFRCPPDVYTYTILI 248
G+R PD T+T LI
Sbjct: 107 VEMGYR--PDTITFTTLI 122
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 142 FARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ V WD +S +G +VT +T +I L + L+ EA A +MK+
Sbjct: 440 MCKAGKVDDGWDLFCSLSLKGVKPNVVTYNT---MISGLCSKRLLQEAYALLKKMKEDGP 496
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQM 230
PD YN +I A R G+ + L+ +M
Sbjct: 497 LPDSGTYNTLIRAHLRDGDKAASAELIREM 526
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI+ EG V+EAL M +PD++ YN +I +C+ G ++A ++
Sbjct: 227 TVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMV 286
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
+EL G C PDV +Y IL+ + G
Sbjct: 287 RNLELKG--CEPDVISYNILLRALLNQG 312
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ EM RG ++ T +T+ I+ + +EG+V+ A ++ C PDV +YN+++
Sbjct: 250 LMDEMLSRGLKPDMFTYNTI---IRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLR 306
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
AL G + + L+ +M +C P+V TY+ILI++ C+ G
Sbjct: 307 ALLNQGKWEEGEKLMTKM--FSEKCDPNVVTYSILITTLCRDG 347
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + LI L +G + EA+ MK+ PD Y+Y+ +I A CR G + A LE M
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 394
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
G C PD+ Y ++++ CK G
Sbjct: 395 ISDG--CLPDIVNYNTVLATLCKNG 417
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTS----TVTCLIKVLGEEGLVNEALATFYRMKQFR 199
RG +G+ D EM R N EL + L++ L +G E +M +
Sbjct: 271 RGMCKEGMVDRAFEMVR--NLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK 328
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
C P+V Y+++I LCR G +A LL+ M+ G PD Y+Y LI+++C+ G
Sbjct: 329 CDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL--TPDAYSYDPLIAAFCREG 382
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGNG----ELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196
+++ G+ ++ L L+ MS NG E+ S ++CL + EG+V+EA M+
Sbjct: 448 LWSSGDKIRALHMILEMMS---NGIDPDEITYNSMISCLCR----EGMVDEAFELLVDMR 500
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
P V YN+V+ C+ A +LE M G C P+ TYT+LI
Sbjct: 501 SCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESM--VGNGCRPNETTYTVLI 550
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+PDV+AYN +IN C++ + A +L++M F PD TY I+I S C G
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDF--SPDTVTYNIMIGSLCSRG 207
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T T +I L G ++ AL ++ C+P V Y ++I A G ++A L++
Sbjct: 193 TVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMD 252
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGM 256
+M G + PD++TY +I CK GM
Sbjct: 253 EMLSRGLK--PDMFTYNTIIRGMCKEGM 278
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
F R + +FL+ M G ++V +TV + L + G ++AL F ++ +
Sbjct: 377 AFCREGRLDVAIEFLETMISDGCLPDIVNYNTV---LATLCKNGKADQALEIFGKLGEVG 433
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
C P+ +YN + +AL G+ +A ++ +M G PD TY +IS C+ GM
Sbjct: 434 CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGI--DPDEITYNSMISCLCREGM 488
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A RM+ PD YN++I +LC G + A +L Q L C P V TY
Sbjct: 174 IDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ--LLSDNCQPTVITY 231
Query: 245 TILISS 250
TILI +
Sbjct: 232 TILIEA 237
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
+S+ + L G AL M PD YN +I+ LCR G ++A LL
Sbjct: 438 SSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLV 497
Query: 229 QMELPGFRCPPDVYTYTILISSYCK 253
M F P V TY I++ +CK
Sbjct: 498 DMRSCEFH--PSVVTYNIVLLGFCK 520
Score = 37.7 bits (86), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC--LIKVLGEEGLVNEA 188
N VT + R ++ + LK M +G +T + LI EG ++ A
Sbjct: 332 NVVTYSILITTLCRDGKIEEAMNLLKLMKEKG----LTPDAYSYDPLIAAFCREGRLDVA 387
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
+ M C PD+ YN V+ LC+ G ++A + ++ G C P+ +Y +
Sbjct: 388 IEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG--CSPNSSSYNTMF 445
Query: 249 SSYCKYG 255
S+ G
Sbjct: 446 SALWSSG 452
>sp|Q9FND8|PP409_ARATH Pentatricopeptide repeat-containing protein At5g40400
OS=Arabidopsis thaliana GN=At5g40400 PE=2 SV=1
Length = 610
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 141 VFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199
VF +N + + DFL++M G +LVT +T L+ G + EA + M + R
Sbjct: 245 VFCNDSNFREVDDFLEKMEEEGFEPDLVTYNT---LVSSYCRRGRLKEAFYLYKIMYRRR 301
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
PD+ Y +I LC+ G +A +M G + PD +Y LI +YCK GM
Sbjct: 302 VVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIK--PDCMSYNTLIYAYCKEGM 356
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
P+ Y +N++ N C NF + LE+ME GF PD+ TY L+SSYC+ G
Sbjct: 234 PNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFE--PDLVTYNTLVSSYCRRG 285
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 4/123 (3%)
Query: 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192
VTC + + + ++ W M R G T T L V + E
Sbjct: 202 VTCNHLLNGLLKLDLMEDCWQVYSVMCRVGIHP--NTYTFNILTNVFCNDSNFREVDDFL 259
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+M++ PD+ YN ++++ CR G +A +L + M R PD+ TYT LI C
Sbjct: 260 EKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRR--RVVPDLVTYTSLIKGLC 317
Query: 253 KYG 255
K G
Sbjct: 318 KDG 320
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G T LI+ L + EAL ++K D Y +I LCR+G +A
Sbjct: 442 GHEAKPETYNNLIESLSRCDAIEEALVLKGKLKNQNQVLDAKTYRALIGCLCRIGRNREA 501
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK 253
L+ +M + PD + L+ YCK
Sbjct: 502 ESLMAEMFDSEVK--PDSFICGALVYGYCK 529
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 7/145 (4%)
Query: 112 INKATE-FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS 170
+++A E FY E+ F+ TC + + +R N ++ W F +M R V T
Sbjct: 171 VDEAIECFYLMKEK--GFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTF 228
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ +I VL +EG + +A M+ F +P + YN ++ G AR ++ +M
Sbjct: 229 NI--MINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEM 286
Query: 231 ELPGFRCPPDVYTYTILISSYCKYG 255
+ GF+ PD+ TY ++S C G
Sbjct: 287 KSKGFQ--PDMQTYNPILSWMCNEG 309
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++ A + M PD YN ++ LC G F +AR L+ +M+ G + PD
Sbjct: 481 GNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIK--PDHI 538
Query: 243 TYTILISSYCKYG 255
+Y LIS Y K G
Sbjct: 539 SYNTLISGYSKKG 551
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 43/153 (28%)
Query: 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQ 197
+V +R N+++ L+D L R L T ST+ L++ + +V+EA+ FY MK+
Sbjct: 128 VVTSRKNSIRNLFDELVLAHDR----LETKSTILFDLLVRCCCQLRMVDEAIECFYLMKE 183
Query: 198 -----------------------------------FRCRPDVYAYNVVINALCRVGNFNK 222
+ +VY +N++IN LC+ G K
Sbjct: 184 KGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKK 243
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
A+ L ME+ G + P + TY L+ + G
Sbjct: 244 AKGFLGIMEVFGIK--PTIVTYNTLVQGFSLRG 274
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T T T LI VL + EA F ++ +PD+ N +++ C +GN ++A LL
Sbjct: 431 TQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLL 490
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG 255
++M++ PD TY L+ C G
Sbjct: 491 KEMDMMSIN--PDDVTYNCLMRGLCGEG 516
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 147 NVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N+ + LKEM N + VT + CL++ L EG EA MK+ +PD
Sbjct: 482 NMDRAFSLLKEMDMMSINPDDVTYN---CLMRGLCGEGKFEEARELMGEMKRRGIKPDHI 538
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+YN +I+ + G+ A + ++M GF P + TY L+ K
Sbjct: 539 SYNTLISGYSKKGDTKHAFMVRDEMLSLGFN--PTLLTYNALLKGLSK 584
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 153 DFLKEMSRRGNGELVTTS-TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
+ L+EM G LV S + LI+ G + A A M + P Y YN +I
Sbjct: 313 EVLREMKEIG---LVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLI 369
Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ L A L+ ++ G D TY ILI+ YC++G
Sbjct: 370 HGLFMENKIEAAEILIREIREKGIVL--DSVTYNILINGYCQHG 411
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
D YN++IN C+ G+ KA L ++M G + P +TYT LI C+
Sbjct: 396 DSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQ--PTQFTYTSLIYVLCR 444
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 38/138 (27%)
Query: 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
W + M R N E ++ T T LI+ GL +EA+ F RM+ + C PD A+++VI
Sbjct: 171 WHLIDLMKSR-NVE-ISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVI 228
Query: 212 NAL----------------------------------CRVGNFNKARFLLEQMELPGFRC 237
+ L CR G ++A + ++M+L G
Sbjct: 229 SNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIE- 287
Query: 238 PPDVYTYTILISSYCKYG 255
P+VYTY+I+I + C+ G
Sbjct: 288 -PNVYTYSIVIDALCRCG 304
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R + + +D LK+ R +++ T L++ G ++EA F MK P+
Sbjct: 236 RASEAQSFFDSLKD---RFEPDVIV---YTNLVRGWCRAGEISEAEKVFKEMKLAGIEPN 289
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
VY Y++VI+ALCR G ++A + M G C P+ T+ L+ + K G
Sbjct: 290 VYTYSIVIDALCRCGQISRAHDVFADMLDSG--CAPNAITFNNLMRVHVKAG 339
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
V ST + + + ++ VN A + +M + +C P+ YN+++ VG+ + L
Sbjct: 393 VNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMF--VGSKSTDMVL 450
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ E+ P+V TY +L++ +C G
Sbjct: 451 KMKKEMDDKEVEPNVNTYRLLVTMFCGMG 479
Score = 38.9 bits (89), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
L++V + G + L + +MK+ C PD YN +I A CR N A +L M
Sbjct: 331 LMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTM 386
>sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170
OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1
Length = 447
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDVYAYNVVINALCRVGNFNKARFL 226
T T LI V G+ L+++A +T MK C+PDV+ + V+I+ C++G F+ + +
Sbjct: 128 TIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSI 187
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ +M G C TY +I Y K GM
Sbjct: 188 VLEMSYLGVGCS--TVTYNTIIDGYGKAGM 215
Score = 38.5 bits (88), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 150 GLWDFLK----EMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDV 204
G +D +K EMS G G +T T +I G+ G+ E + M + PDV
Sbjct: 179 GRFDLVKSIVLEMSYLGVG--CSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDV 236
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
N +I + N K + +L G + PD+ T+ ILI S+ K GM
Sbjct: 237 CTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQ--PDITTFNILILSFGKAGM 286
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
F + ++ + D ++M +G V +++T L+ + GLV + + ++
Sbjct: 316 FGKAGRIEKMDDVFRKMKYQG----VKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSD 371
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
D +N +INA + G+ + L QME +C PD T+ +I +Y +G+
Sbjct: 372 VVLDTPFFNCIINAYGQAGDLATMKELYIQMEER--KCKPDKITFATMIKTYTAHGI 426
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ G N++ + + G +TT + LI G+ G+ + + M++
Sbjct: 246 YGNGRNMRKMESWYSRFQLMGVQPDITTFNI--LILSFGKAGMYKKMCSVMDFMEKRFFS 303
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
YN+VI + G K + +M+ G + P+ TY L+++Y K G+
Sbjct: 304 LTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVK--PNSITYCSLVNAYSKAGL 356
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
C+I G+ G + + +M++ +C+PD + +I G F+ + L +QM
Sbjct: 381 CIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISS 440
Query: 234 G 234
G
Sbjct: 441 G 441
>sp|Q9LVA2|PP443_ARATH Pentatricopeptide repeat-containing protein At5g62370
OS=Arabidopsis thaliana GN=At5g62370 PE=2 SV=1
Length = 982
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T + + +I LG++G V EA TF +M + +PD AY ++IN R G ++A L+
Sbjct: 581 TVAIYSSIIGSLGKQGRVVEAEETFAKMLESGIQPDEIAYMIMINTYARNGRIDEANELV 640
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
E++ R P +TYT+LIS + K GM
Sbjct: 641 EEVVKHFLR--PSSFTYTVLISGFVKMGM 667
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
+G V TCL+K ++ + A+ + RM + D +N +I+ ++G +K
Sbjct: 266 DGYYVDKVMYTCLMKEYCKDNNMTMAMRLYLRMVERSFELDPCIFNTLIHGFMKLGMLDK 325
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
R + QM G + +V+TY I+I SYCK G
Sbjct: 326 GRVMFSQMIKKGVQ--SNVFTYHIMIGSYCKEG 356
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+IK L +E ++ + + +++ PDV Y +V+N LC+ + + A +++ ME G
Sbjct: 518 VIKCLFQENIIEDLASLVNIIQELDFVPDVDTYLIVVNELCKKNDRDAAFAIIDAMEELG 577
Query: 235 FRCPPDVYTYTILISSYCKYG 255
R P V Y+ +I S K G
Sbjct: 578 LR--PTVAIYSSIIGSLGKQG 596
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 166 LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
L+ T + + LG G + A+ ++K+ P++Y +N +I C G ++A
Sbjct: 757 LIRTKPLVSIPSSLGNYGSKSFAMEVIGKVKK-SIIPNLYLHNTIITGYCAAGRLDEAYN 815
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYG 255
LE M+ G P++ TYTIL+ S+ + G
Sbjct: 816 HLESMQKEGI--VPNLVTYTILMKSHIEAG 843
Score = 34.7 bits (78), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I G ++EA + + RP + Y V+I+ ++G K L++M G
Sbjct: 623 MINTYARNGRIDEANELVEEVVKHFLRPSSFTYTVLISGFVKMGMMEKGCQYLDKMLEDG 682
Query: 235 FRCPPDVYTYTILISSYCKYG 255
P+V YT LI + K G
Sbjct: 683 L--SPNVVLYTALIGHFLKKG 701
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELP 233
L K L G +NEA+ + P V Y + C+ G +A L + ME+
Sbjct: 207 LFKGLCGHGHLNEAIGMLDTLCGMTRMPLPVNLYKSLFYCFCKRGCAAEAEALFDHMEVD 266
Query: 234 GFRCPPDVYTYTILISSYCK 253
G+ D YT L+ YCK
Sbjct: 267 GYYV--DKVMYTCLMKEYCK 284
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R ++ L D + EM R + T T T LI L +EA+A RM Q C+P+
Sbjct: 170 RISDAVALVDQMVEMGYRPD-----TITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPN 224
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+ Y VV+N LC+ G+ + A LL +ME + DV + +I S CKY
Sbjct: 225 LVTYGVVVNGLCKRGDTDLALNLLNKMEAA--KIEADVVIFNTIIDSLCKY 273
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 142 FARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + V+ + +EMS RG LV T T T LI+ L +G + A F +M
Sbjct: 410 FCKSKRVEDGTELFREMSHRG---LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 466
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
PD+ Y+++++ LC G KA + + M+ + D+Y YT +I CK G
Sbjct: 467 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL--DIYIYTTMIEGMCKAG 519
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 154 FLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ M +RG LVT V + L + G + AL +M+ + DV +N +I+
Sbjct: 212 LVDRMVQRGCQPNLVTYGVV---VNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIID 268
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+LC+ + + A L ++ME G R P+V TY+ LIS C YG
Sbjct: 269 SLCKYRHVDDALNLFKEMETKGIR--PNVVTYSSLISCLCSYG 309
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI +EG EA + M + PD++ YN ++N C +KA+ + E M
Sbjct: 332 TFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFM 391
Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
C PDV TY LI +CK
Sbjct: 392 --VSKDCFPDVVTYNTLIKGFCK 412
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T + L+ L G + +AL F M++ + D+Y Y +I +C+ G + L +
Sbjct: 472 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 531
Query: 231 ELPGFRCPPDVYTYTILISSYC 252
L G + P+V TY +IS C
Sbjct: 532 SLKGVK--PNVVTYNTMISGLC 551
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++AL F M+ RP+V Y+ +I+ LC G ++ A LL M + P++ T+
Sbjct: 276 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK--KINPNLVTF 333
Query: 245 TILISSYCKYG 255
LI ++ K G
Sbjct: 334 NALIDAFVKEG 344
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 147 NVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
+V + KEM +G +VT S+ LI L G ++A M + + P++
Sbjct: 275 HVDDALNLFKEMETKGIRPNVVTYSS---LISCLCSYGRWSDASQLLSDMIEKKINPNLV 331
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
+N +I+A + G F +A L + M PD++TY L++ +C +
Sbjct: 332 TFNALIDAFVKEGKFVEAEKLYDDMIKRSI--DPDIFTYNSLVNGFCMH 378
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+M++ +Y YN++IN CR + A LL +M G+ P + T + L++ YC
Sbjct: 110 KMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYE--PSIVTLSSLLNGYC 166
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+A +M + RPD + +I+ L ++A L+++M G C P++ TY
Sbjct: 171 ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG--CQPNLVTY 228
Query: 245 TILISSYCKYG 255
++++ CK G
Sbjct: 229 GVVVNGLCKRG 239
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I+ + + G V++ F + +P+V YN +I+ LC +A LL++M+
Sbjct: 509 TTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKE 568
Query: 233 PGFRCP-PDVYTYTILISSYCKYG 255
G P P+ TY LI ++ + G
Sbjct: 569 DG---PLPNSGTYNTLIRAHLRDG 589
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
T LI ++ ALA +M + P + + ++N C + A L++QM
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
Query: 231 ELPGFRCPPDVYTYTILI 248
G+R PD T+T LI
Sbjct: 182 VEMGYR--PDTITFTTLI 197
Score = 34.3 bits (77), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+ F M + R P + +N +++A+ ++ F+ L E+M+ +YTY
Sbjct: 66 LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQR--LEIVHGLYTY 123
Query: 245 TILISSYCK 253
ILI+ +C+
Sbjct: 124 NILINCFCR 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,278,900
Number of Sequences: 539616
Number of extensions: 3720432
Number of successful extensions: 13550
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 10772
Number of HSP's gapped (non-prelim): 1986
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)