Query 047392
Match_columns 258
No_of_seqs 196 out of 2095
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 10:40:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.6E-28 3.4E-33 235.3 18.4 141 112-257 630-770 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.9E-28 4.1E-33 234.7 18.0 143 112-257 523-665 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 6.4E-28 1.4E-32 226.4 14.0 154 88-257 289-442 (697)
4 PLN03081 pentatricopeptide (PP 99.9 1.4E-26 2.9E-31 217.4 13.4 170 79-257 301-478 (697)
5 PLN03077 Protein ECB2; Provisi 99.9 1.4E-25 3.1E-30 214.9 13.1 153 89-257 253-405 (857)
6 PLN03077 Protein ECB2; Provisi 99.9 7E-25 1.5E-29 210.2 14.8 191 59-258 241-441 (857)
7 PF13041 PPR_2: PPR repeat fam 99.7 6E-17 1.3E-21 99.9 6.3 48 168-215 2-49 (50)
8 PF13041 PPR_2: PPR repeat fam 99.7 2E-16 4.4E-21 97.5 6.4 50 202-253 1-50 (50)
9 PF12854 PPR_1: PPR repeat 99.3 2.9E-12 6.3E-17 71.8 4.3 34 198-231 1-34 (34)
10 KOG4422 Uncharacterized conser 99.2 9.2E-11 2E-15 100.1 12.0 119 130-256 205-327 (625)
11 PF12854 PPR_1: PPR repeat 99.2 3.9E-11 8.5E-16 67.2 4.2 33 162-196 2-34 (34)
12 PRK11788 tetratricopeptide rep 99.0 1.8E-08 4E-13 88.3 17.0 134 110-253 194-327 (389)
13 KOG4422 Uncharacterized conser 99.0 5E-09 1.1E-13 89.7 11.4 151 91-255 209-370 (625)
14 PRK11788 tetratricopeptide rep 99.0 3.2E-08 7E-13 86.8 16.1 140 111-257 156-298 (389)
15 TIGR00756 PPR pentatricopeptid 98.9 2.8E-09 6.1E-14 59.8 3.8 33 171-203 2-34 (35)
16 PF13812 PPR_3: Pentatricopept 98.8 9E-09 1.9E-13 57.5 4.0 33 170-202 2-34 (34)
17 TIGR00756 PPR pentatricopeptid 98.7 2.3E-08 5E-13 56.0 4.0 35 205-241 1-35 (35)
18 TIGR02917 PEP_TPR_lipo putativ 98.6 2.7E-06 5.9E-11 81.6 18.2 136 112-256 583-718 (899)
19 PF13812 PPR_3: Pentatricopept 98.6 6.1E-08 1.3E-12 54.1 4.2 34 204-239 1-34 (34)
20 PF01535 PPR: PPR repeat; Int 98.6 3.6E-08 7.7E-13 53.7 3.1 29 171-199 2-30 (31)
21 TIGR02917 PEP_TPR_lipo putativ 98.6 2.3E-06 5E-11 82.0 17.2 136 111-256 616-751 (899)
22 PF10037 MRP-S27: Mitochondria 98.6 1.1E-06 2.4E-11 77.2 13.1 135 118-254 50-186 (429)
23 PF01535 PPR: PPR repeat; Int 98.5 7.7E-08 1.7E-12 52.4 3.0 31 205-235 1-31 (31)
24 PF08579 RPM2: Mitochondrial r 98.5 3.8E-06 8.2E-11 59.5 11.2 82 171-254 27-117 (120)
25 PF13429 TPR_15: Tetratricopep 98.3 8.2E-06 1.8E-10 68.5 11.6 141 110-258 124-265 (280)
26 KOG4318 Bicoid mRNA stability 98.3 9.5E-06 2.1E-10 75.4 12.5 85 167-256 202-286 (1088)
27 PF08579 RPM2: Mitochondrial r 98.3 1.5E-05 3.3E-10 56.4 10.1 80 136-217 29-117 (120)
28 TIGR02521 type_IV_pilW type IV 98.3 0.00018 3.8E-09 57.5 17.8 142 109-257 78-219 (234)
29 PF06239 ECSIT: Evolutionarily 98.3 2.5E-05 5.4E-10 61.9 12.0 99 116-219 34-153 (228)
30 TIGR02521 type_IV_pilW type IV 98.3 0.0002 4.3E-09 57.2 17.8 138 112-257 47-185 (234)
31 PF06239 ECSIT: Evolutionarily 98.1 2.4E-05 5.2E-10 62.0 9.3 86 168-255 46-152 (228)
32 KOG4318 Bicoid mRNA stability 98.0 5.2E-06 1.1E-10 77.1 4.2 91 117-222 11-101 (1088)
33 PF10037 MRP-S27: Mitochondria 97.9 0.00014 3E-09 64.2 11.0 104 112-217 82-186 (429)
34 TIGR02552 LcrH_SycD type III s 97.9 0.00087 1.9E-08 49.5 14.0 109 133-249 18-126 (135)
35 TIGR00990 3a0801s09 mitochondr 97.9 0.0014 3E-08 61.4 18.3 137 110-257 345-483 (615)
36 PRK12370 invasion protein regu 97.9 0.0017 3.6E-08 60.1 17.9 94 134-231 374-468 (553)
37 PRK12370 invasion protein regu 97.9 0.0014 3E-08 60.6 17.4 136 112-257 320-457 (553)
38 PRK15174 Vi polysaccharide exp 97.9 0.0019 4.2E-08 60.9 18.5 136 112-256 126-261 (656)
39 PRK15174 Vi polysaccharide exp 97.9 0.0015 3.2E-08 61.7 17.7 137 111-257 91-228 (656)
40 TIGR00990 3a0801s09 mitochondr 97.8 0.0021 4.7E-08 60.1 18.0 139 111-257 309-449 (615)
41 cd00189 TPR Tetratricopeptide 97.8 0.001 2.2E-08 44.4 11.5 95 135-233 3-97 (100)
42 PRK15359 type III secretion sy 97.7 0.0047 1E-07 46.5 15.7 103 135-245 27-129 (144)
43 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0024 5.2E-08 45.6 12.9 101 134-234 4-106 (119)
44 PF13429 TPR_15: Tetratricopep 97.7 0.00023 5E-09 59.7 8.2 136 112-256 93-229 (280)
45 PRK10370 formate-dependent nit 97.6 0.011 2.4E-07 47.1 16.9 130 112-251 55-187 (198)
46 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0017 3.8E-08 57.0 12.9 111 137-258 174-285 (395)
47 PRK11189 lipoprotein NlpI; Pro 97.6 0.013 2.7E-07 49.8 17.9 81 112-197 80-160 (296)
48 PF04733 Coatomer_E: Coatomer 97.6 0.0028 6.2E-08 53.5 13.3 129 112-256 118-250 (290)
49 PRK09782 bacteriophage N4 rece 97.5 0.0072 1.6E-07 59.3 17.4 113 112-232 525-637 (987)
50 PRK09782 bacteriophage N4 rece 97.5 0.012 2.7E-07 57.7 18.2 136 111-257 557-693 (987)
51 PRK02603 photosystem I assembl 97.5 0.015 3.2E-07 45.1 15.4 118 132-256 35-166 (172)
52 PF12921 ATP13: Mitochondrial 97.4 0.0053 1.2E-07 45.1 11.9 89 131-219 1-103 (126)
53 PF09976 TPR_21: Tetratricopep 97.4 0.0057 1.2E-07 46.0 12.0 116 112-229 27-143 (145)
54 PRK10747 putative protoheme IX 97.3 0.013 2.8E-07 51.9 15.2 131 114-257 247-377 (398)
55 PRK10747 putative protoheme IX 97.3 0.02 4.4E-07 50.7 16.0 89 143-234 129-217 (398)
56 PRK10049 pgaA outer membrane p 97.3 0.036 7.7E-07 53.4 18.7 132 113-255 32-164 (765)
57 TIGR03302 OM_YfiO outer membra 97.3 0.041 8.9E-07 44.7 16.6 142 112-257 49-219 (235)
58 PF05843 Suf: Suppressor of fo 97.3 0.011 2.4E-07 49.7 13.5 127 112-248 17-147 (280)
59 PRK10049 pgaA outer membrane p 97.2 0.025 5.5E-07 54.4 17.4 141 112-256 253-408 (765)
60 CHL00033 ycf3 photosystem I as 97.2 0.03 6.6E-07 43.1 14.9 98 131-229 34-138 (168)
61 PLN03088 SGT1, suppressor of 97.2 0.013 2.8E-07 51.1 13.9 103 140-250 10-112 (356)
62 PF09295 ChAPs: ChAPs (Chs5p-A 97.2 0.014 3.1E-07 51.3 13.9 111 112-232 185-296 (395)
63 COG2956 Predicted N-acetylgluc 97.2 0.016 3.5E-07 48.8 13.3 93 104-199 77-171 (389)
64 PRK14574 hmsH outer membrane p 97.2 0.026 5.6E-07 54.5 16.6 106 141-255 111-217 (822)
65 PF14559 TPR_19: Tetratricopep 97.2 0.0024 5.3E-08 41.1 6.9 63 181-248 3-65 (68)
66 PF05843 Suf: Suppressor of fo 97.2 0.0061 1.3E-07 51.3 10.9 119 133-257 2-123 (280)
67 PRK11447 cellulose synthase su 97.1 0.029 6.2E-07 56.6 17.1 134 112-256 589-726 (1157)
68 PF12921 ATP13: Mitochondrial 97.1 0.0097 2.1E-07 43.7 10.3 84 168-253 1-100 (126)
69 KOG2003 TPR repeat-containing 97.1 0.027 5.8E-07 49.6 14.4 121 128-256 588-709 (840)
70 PF04733 Coatomer_E: Coatomer 97.1 0.0088 1.9E-07 50.6 11.5 115 112-234 147-266 (290)
71 KOG1840 Kinesin light chain [C 97.1 0.0084 1.8E-07 54.3 11.8 156 99-258 293-467 (508)
72 PF12895 Apc3: Anaphase-promot 97.1 0.0018 3.9E-08 43.8 5.8 81 145-229 2-83 (84)
73 KOG3941 Intermediate in Toll s 97.1 0.0061 1.3E-07 50.5 9.6 99 116-219 54-173 (406)
74 PRK11447 cellulose synthase su 97.1 0.07 1.5E-06 53.8 19.0 134 110-251 283-429 (1157)
75 PRK15179 Vi polysaccharide bio 97.0 0.075 1.6E-06 50.4 17.6 128 112-249 102-230 (694)
76 PF09976 TPR_21: Tetratricopep 97.0 0.049 1.1E-06 40.9 13.6 120 133-257 13-134 (145)
77 PF14559 TPR_19: Tetratricopep 96.9 0.0054 1.2E-07 39.4 6.8 64 143-211 2-65 (68)
78 PRK11189 lipoprotein NlpI; Pro 96.9 0.088 1.9E-06 44.6 15.6 137 109-257 111-252 (296)
79 TIGR00540 hemY_coli hemY prote 96.9 0.073 1.6E-06 47.3 15.6 116 113-234 101-217 (409)
80 KOG3081 Vesicle coat complex C 96.9 0.08 1.7E-06 43.6 14.1 122 112-249 124-249 (299)
81 KOG1126 DNA-binding cell divis 96.8 0.032 6.9E-07 51.1 12.9 136 109-257 468-607 (638)
82 KOG3941 Intermediate in Toll s 96.8 0.011 2.3E-07 49.1 8.9 86 168-255 66-172 (406)
83 PRK15179 Vi polysaccharide bio 96.8 0.079 1.7E-06 50.2 15.5 122 127-257 81-204 (694)
84 PF03704 BTAD: Bacterial trans 96.7 0.014 3.1E-07 43.8 8.8 70 134-206 64-138 (146)
85 PRK14574 hmsH outer membrane p 96.7 0.057 1.2E-06 52.1 14.7 119 112-232 267-395 (822)
86 KOG2002 TPR-containing nuclear 96.7 0.023 5.1E-07 54.1 11.3 133 109-248 625-758 (1018)
87 TIGR00540 hemY_coli hemY prote 96.7 0.32 7E-06 43.2 18.3 118 110-234 132-255 (409)
88 PF13432 TPR_16: Tetratricopep 96.6 0.012 2.5E-07 37.5 6.7 55 177-232 5-59 (65)
89 cd00189 TPR Tetratricopeptide 96.6 0.024 5.2E-07 37.4 8.7 82 171-256 2-83 (100)
90 KOG1129 TPR repeat-containing 96.6 0.035 7.5E-07 47.1 10.7 136 112-257 239-374 (478)
91 KOG4626 O-linked N-acetylgluco 96.6 0.089 1.9E-06 48.3 14.0 121 110-242 300-422 (966)
92 cd05804 StaR_like StaR_like; a 96.6 0.16 3.4E-06 43.8 15.5 98 134-234 116-216 (355)
93 PRK15359 type III secretion sy 96.6 0.093 2E-06 39.4 12.1 91 111-208 39-129 (144)
94 COG5010 TadD Flp pilus assembl 96.6 0.21 4.6E-06 40.9 14.6 121 130-257 98-218 (257)
95 PF12895 Apc3: Anaphase-promot 96.5 0.0082 1.8E-07 40.5 5.7 80 111-194 4-83 (84)
96 KOG2003 TPR repeat-containing 96.5 0.14 3E-06 45.4 13.9 145 101-256 495-675 (840)
97 cd05804 StaR_like StaR_like; a 96.5 0.37 7.9E-06 41.6 17.0 85 111-197 129-214 (355)
98 TIGR03302 OM_YfiO outer membra 96.4 0.26 5.7E-06 39.9 15.0 122 110-234 84-233 (235)
99 TIGR02795 tol_pal_ybgF tol-pal 96.4 0.21 4.6E-06 35.3 12.7 89 111-199 17-106 (119)
100 COG3071 HemY Uncharacterized e 96.3 0.26 5.5E-06 42.8 14.4 124 130-257 185-377 (400)
101 COG2956 Predicted N-acetylgluc 96.3 0.15 3.3E-06 43.2 12.7 113 112-236 51-173 (389)
102 TIGR02552 LcrH_SycD type III s 96.3 0.16 3.5E-06 37.1 12.1 92 112-210 33-124 (135)
103 COG4783 Putative Zn-dependent 96.3 0.25 5.5E-06 43.9 14.6 112 112-230 322-434 (484)
104 KOG4626 O-linked N-acetylgluco 96.2 0.23 5E-06 45.8 14.2 94 134-232 390-484 (966)
105 PF03704 BTAD: Bacterial trans 96.2 0.05 1.1E-06 40.8 8.7 71 171-244 64-139 (146)
106 COG3063 PilF Tfp pilus assembl 96.1 0.6 1.3E-05 37.8 14.9 137 112-256 85-222 (250)
107 COG4783 Putative Zn-dependent 96.1 0.28 6E-06 43.7 13.7 107 143-257 317-424 (484)
108 PRK10803 tol-pal system protei 96.0 0.3 6.5E-06 40.7 13.4 107 132-242 143-251 (263)
109 COG5010 TadD Flp pilus assembl 96.0 0.4 8.8E-06 39.3 13.6 115 112-232 116-230 (257)
110 KOG1070 rRNA processing protei 96.0 0.34 7.4E-06 48.4 14.9 117 112-236 1513-1666(1710)
111 KOG1126 DNA-binding cell divis 95.9 0.086 1.9E-06 48.4 10.3 114 112-231 335-482 (638)
112 KOG1070 rRNA processing protei 95.9 0.39 8.6E-06 48.0 15.1 115 112-232 1474-1592(1710)
113 KOG1173 Anaphase-promoting com 95.9 0.23 5E-06 45.0 12.6 139 109-254 393-535 (611)
114 PF13371 TPR_9: Tetratricopept 95.9 0.076 1.7E-06 34.4 7.6 57 177-234 3-59 (73)
115 KOG1840 Kinesin light chain [C 95.9 0.68 1.5E-05 42.2 15.8 141 112-252 341-502 (508)
116 PLN03088 SGT1, suppressor of 95.8 0.31 6.7E-06 42.5 13.3 95 112-213 18-112 (356)
117 KOG1914 mRNA cleavage and poly 95.8 0.48 1E-05 42.9 14.2 136 114-257 349-488 (656)
118 COG3063 PilF Tfp pilus assembl 95.8 0.8 1.7E-05 37.1 14.2 136 111-256 50-188 (250)
119 KOG1915 Cell cycle control pro 95.7 0.61 1.3E-05 41.7 14.2 125 112-247 89-213 (677)
120 PRK10370 formate-dependent nit 95.7 0.45 9.8E-06 37.8 12.7 105 145-257 52-160 (198)
121 PF10300 DUF3808: Protein of u 95.7 0.56 1.2E-05 42.6 14.7 172 50-232 182-375 (468)
122 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.44 9.6E-06 42.4 13.4 100 130-235 73-176 (453)
123 KOG3081 Vesicle coat complex C 95.7 0.65 1.4E-05 38.4 13.3 115 112-234 153-272 (299)
124 PF13424 TPR_12: Tetratricopep 95.6 0.055 1.2E-06 35.7 6.1 62 170-231 6-73 (78)
125 PF13432 TPR_16: Tetratricopep 95.6 0.078 1.7E-06 33.6 6.6 56 139-197 4-59 (65)
126 PF12688 TPR_5: Tetratrico pep 95.5 0.63 1.4E-05 33.8 13.0 105 141-253 10-118 (120)
127 KOG3616 Selective LIM binding 95.5 0.12 2.5E-06 48.5 9.3 130 89-231 652-818 (1636)
128 PRK15363 pathogenicity island 95.3 0.5 1.1E-05 35.9 11.0 92 138-233 41-132 (157)
129 PF13414 TPR_11: TPR repeat; P 95.2 0.13 2.7E-06 32.9 6.7 63 169-232 3-66 (69)
130 PRK02603 photosystem I assembl 95.1 1.2 2.5E-05 34.3 13.3 101 112-219 51-166 (172)
131 PF04840 Vps16_C: Vps16, C-ter 94.9 0.23 5E-06 42.6 9.2 79 130-226 206-284 (319)
132 PRK10153 DNA-binding transcrip 94.9 1.3 2.8E-05 40.7 14.6 123 112-244 358-489 (517)
133 KOG1155 Anaphase-promoting com 94.9 2.1 4.5E-05 38.3 14.8 127 99-232 333-460 (559)
134 PF13424 TPR_12: Tetratricopep 94.8 0.12 2.5E-06 34.1 5.8 64 133-196 6-73 (78)
135 PF13170 DUF4003: Protein of u 94.8 1.4 3E-05 37.5 13.4 129 112-245 78-221 (297)
136 PF13371 TPR_9: Tetratricopept 94.7 0.33 7.2E-06 31.3 7.8 62 140-206 3-64 (73)
137 KOG2053 Mitochondrial inherita 94.7 1.6 3.4E-05 41.9 14.5 130 112-253 25-156 (932)
138 PF13414 TPR_11: TPR repeat; P 94.6 0.28 6.1E-06 31.3 7.2 64 131-197 2-66 (69)
139 COG3071 HemY Uncharacterized e 94.6 2.8 6.1E-05 36.5 15.8 89 112-204 134-222 (400)
140 KOG3785 Uncharacterized conser 94.6 0.52 1.1E-05 40.6 10.2 122 112-245 375-498 (557)
141 PF13170 DUF4003: Protein of u 94.6 1.7 3.7E-05 36.9 13.5 118 112-232 119-249 (297)
142 KOG2053 Mitochondrial inherita 94.6 0.49 1.1E-05 45.2 10.9 104 143-256 20-125 (932)
143 KOG1914 mRNA cleavage and poly 94.5 2.2 4.8E-05 38.9 14.2 118 109-232 379-500 (656)
144 KOG3785 Uncharacterized conser 94.4 0.42 9.1E-06 41.2 9.4 91 138-232 365-456 (557)
145 PF14938 SNAP: Soluble NSF att 94.4 1.2 2.7E-05 37.3 12.4 118 134-252 116-246 (282)
146 KOG1155 Anaphase-promoting com 94.4 2.7 5.8E-05 37.6 14.3 116 130-252 430-551 (559)
147 KOG0547 Translocase of outer m 94.4 0.87 1.9E-05 40.9 11.4 78 112-195 410-488 (606)
148 KOG4570 Uncharacterized conser 94.3 0.28 6E-06 41.5 7.9 104 127-234 59-165 (418)
149 PF12688 TPR_5: Tetratrico pep 94.2 1.5 3.2E-05 31.9 13.2 102 110-216 15-118 (120)
150 COG5107 RNA14 Pre-mRNA 3'-end 94.2 0.61 1.3E-05 41.5 10.1 118 132-256 397-517 (660)
151 PF13762 MNE1: Mitochondrial s 94.2 1.2 2.5E-05 33.5 10.4 83 135-217 42-128 (145)
152 PLN03098 LPA1 LOW PSII ACCUMUL 94.2 0.8 1.7E-05 40.8 11.0 87 168-256 74-176 (453)
153 COG3629 DnrI DNA-binding trans 94.1 0.89 1.9E-05 38.1 10.6 79 132-213 153-236 (280)
154 PF04840 Vps16_C: Vps16, C-ter 94.0 0.73 1.6E-05 39.5 10.3 93 125-229 170-262 (319)
155 KOG2376 Signal recognition par 94.0 4 8.6E-05 37.6 14.9 132 113-254 358-505 (652)
156 KOG1915 Cell cycle control pro 93.9 4.2 9.2E-05 36.6 14.7 84 143-232 152-235 (677)
157 PRK10153 DNA-binding transcrip 93.9 2.7 5.8E-05 38.7 14.3 123 127-257 332-469 (517)
158 KOG0985 Vesicle coat protein c 93.4 1.6 3.4E-05 42.8 11.9 119 112-257 1064-1182(1666)
159 PF12569 NARP1: NMDA receptor- 93.3 6.5 0.00014 36.2 16.0 98 134-235 196-293 (517)
160 COG3629 DnrI DNA-binding trans 93.3 1.5 3.3E-05 36.7 10.7 77 171-250 155-236 (280)
161 KOG4340 Uncharacterized conser 93.1 1.8 3.9E-05 36.6 10.6 97 112-210 160-283 (459)
162 CHL00033 ycf3 photosystem I as 93.0 2.2 4.7E-05 32.6 10.7 81 169-252 35-117 (168)
163 KOG1129 TPR repeat-containing 93.0 3.2 7E-05 35.6 12.0 119 112-233 340-458 (478)
164 PF13512 TPR_18: Tetratricopep 92.7 2.1 4.4E-05 32.1 9.5 83 132-216 11-94 (142)
165 KOG3616 Selective LIM binding 92.7 0.63 1.4E-05 43.9 8.0 100 112-227 748-847 (1636)
166 PRK10803 tol-pal system protei 92.4 2.7 5.8E-05 35.1 11.0 90 111-205 158-251 (263)
167 KOG0553 TPR repeat-containing 92.2 3.5 7.6E-05 34.7 11.2 103 141-251 90-192 (304)
168 PF13762 MNE1: Mitochondrial s 92.1 4 8.6E-05 30.7 10.5 97 156-254 26-128 (145)
169 KOG2076 RNA polymerase III tra 92.1 2.7 5.8E-05 40.4 11.5 94 140-233 385-478 (895)
170 PF12569 NARP1: NMDA receptor- 92.1 6 0.00013 36.4 13.7 82 171-257 196-278 (517)
171 KOG2076 RNA polymerase III tra 92.0 12 0.00027 36.1 17.5 119 110-234 153-271 (895)
172 smart00299 CLH Clathrin heavy 92.0 2.7 5.9E-05 31.0 9.8 114 112-253 23-137 (140)
173 PF00637 Clathrin: Region in C 91.8 0.071 1.5E-06 39.7 0.9 112 137-257 12-141 (143)
174 KOG0985 Vesicle coat protein c 91.7 2.5 5.4E-05 41.5 10.9 101 110-227 1089-1189(1666)
175 PLN02789 farnesyltranstransfer 91.6 8.1 0.00017 33.2 16.5 131 113-253 54-188 (320)
176 KOG2796 Uncharacterized conser 91.6 7.2 0.00016 32.5 13.3 128 116-251 197-329 (366)
177 KOG2002 TPR-containing nuclear 91.4 8.4 0.00018 37.6 14.0 130 112-249 252-383 (1018)
178 KOG0547 Translocase of outer m 91.2 6.3 0.00014 35.6 12.3 117 112-232 444-565 (606)
179 COG4235 Cytochrome c biogenesi 91.2 7.8 0.00017 32.6 12.3 114 130-251 154-270 (287)
180 KOG1173 Anaphase-promoting com 90.9 3.9 8.4E-05 37.4 10.9 100 112-216 430-534 (611)
181 PF13929 mRNA_stabil: mRNA sta 90.4 9.8 0.00021 32.0 14.1 138 112-252 144-289 (292)
182 KOG1128 Uncharacterized conser 90.3 4 8.7E-05 38.5 10.7 127 112-256 414-568 (777)
183 PF02284 COX5A: Cytochrome c o 90.1 2.3 4.9E-05 29.9 6.9 45 188-232 29-73 (108)
184 KOG1128 Uncharacterized conser 90.0 8.4 0.00018 36.4 12.4 132 112-250 501-632 (777)
185 COG1729 Uncharacterized protei 89.9 9.5 0.00021 31.7 11.6 99 132-233 142-244 (262)
186 KOG2047 mRNA splicing factor [ 89.9 12 0.00025 35.2 13.0 133 112-253 154-293 (835)
187 KOG2376 Signal recognition par 89.8 11 0.00023 34.9 12.6 109 112-235 28-141 (652)
188 PF10602 RPN7: 26S proteasome 89.7 5.1 0.00011 31.2 9.7 101 132-232 36-141 (177)
189 cd00923 Cyt_c_Oxidase_Va Cytoc 89.6 4.3 9.4E-05 28.2 7.9 44 151-196 26-69 (103)
190 KOG1125 TPR repeat-containing 89.6 15 0.00032 33.8 13.4 140 112-257 410-558 (579)
191 PF09205 DUF1955: Domain of un 89.5 4.7 0.0001 29.9 8.5 64 171-235 88-151 (161)
192 PF13428 TPR_14: Tetratricopep 89.4 0.93 2E-05 26.2 4.1 28 206-233 3-30 (44)
193 KOG4340 Uncharacterized conser 89.1 2.7 5.8E-05 35.6 7.9 85 144-235 124-209 (459)
194 PF13176 TPR_7: Tetratricopept 89.0 0.92 2E-05 25.0 3.7 23 172-194 2-24 (36)
195 KOG0495 HAT repeat protein [RN 88.9 21 0.00046 33.7 15.7 125 112-247 566-690 (913)
196 PF13929 mRNA_stabil: mRNA sta 88.9 13 0.00028 31.3 12.0 100 114-214 184-288 (292)
197 PRK15331 chaperone protein Sic 88.3 6.9 0.00015 30.1 9.1 88 142-233 47-134 (165)
198 PF13176 TPR_7: Tetratricopept 88.3 1.1 2.5E-05 24.6 3.8 26 206-231 1-26 (36)
199 PRK14720 transcript cleavage f 87.7 16 0.00035 36.0 13.2 89 138-232 89-177 (906)
200 PRK10866 outer membrane biogen 87.3 6.5 0.00014 32.3 9.2 71 141-215 41-115 (243)
201 KOG2280 Vacuolar assembly/sort 86.9 5.1 0.00011 37.9 9.0 106 114-231 666-771 (829)
202 PF09613 HrpB1_HrpK: Bacterial 86.4 12 0.00026 28.7 9.4 94 140-242 18-113 (160)
203 PF13374 TPR_10: Tetratricopep 86.4 2.2 4.8E-05 23.7 4.4 26 171-196 4-29 (42)
204 PF13525 YfiO: Outer membrane 86.4 8.7 0.00019 30.5 9.3 92 141-233 14-119 (203)
205 PF09205 DUF1955: Domain of un 86.4 12 0.00025 27.9 10.0 64 134-200 88-151 (161)
206 KOG0543 FKBP-type peptidyl-pro 86.4 17 0.00036 32.0 11.4 105 140-249 216-332 (397)
207 PF13428 TPR_14: Tetratricopep 85.5 2.3 4.9E-05 24.5 4.2 28 171-198 3-30 (44)
208 COG4700 Uncharacterized protei 85.4 17 0.00036 28.9 14.6 106 125-234 82-190 (251)
209 COG4455 ImpE Protein of avirul 85.2 8.7 0.00019 31.1 8.4 77 134-213 3-81 (273)
210 PRK14720 transcript cleavage f 85.0 17 0.00036 35.8 11.8 86 130-234 114-199 (906)
211 PF10300 DUF3808: Protein of u 85.0 26 0.00057 31.9 12.7 119 112-234 204-335 (468)
212 PF11663 Toxin_YhaV: Toxin wit 84.9 1.1 2.3E-05 33.1 3.0 31 145-179 108-138 (140)
213 PRK04841 transcriptional regul 84.2 32 0.00069 33.8 13.9 122 111-232 506-640 (903)
214 PF13374 TPR_10: Tetratricopep 84.2 3.1 6.8E-05 23.0 4.4 29 204-232 2-30 (42)
215 PRK04841 transcriptional regul 83.9 38 0.00082 33.3 14.3 121 111-232 467-601 (903)
216 PLN02789 farnesyltranstransfer 83.7 28 0.0006 30.0 15.7 133 112-253 88-229 (320)
217 PF04184 ST7: ST7 protein; In 83.4 24 0.00052 32.2 11.2 74 138-212 265-339 (539)
218 KOG2796 Uncharacterized conser 82.6 21 0.00045 29.9 9.8 99 134-234 179-282 (366)
219 KOG4570 Uncharacterized conser 82.5 6.6 0.00014 33.6 7.0 83 112-198 80-164 (418)
220 PF04184 ST7: ST7 protein; In 82.4 39 0.00085 30.8 12.9 74 173-249 263-339 (539)
221 PF10602 RPN7: 26S proteasome 82.2 17 0.00037 28.2 9.1 62 171-232 38-101 (177)
222 PRK15363 pathogenicity island 82.0 20 0.00044 27.3 9.8 81 111-197 50-131 (157)
223 KOG2610 Uncharacterized conser 81.8 34 0.00074 29.7 12.1 113 112-228 119-233 (491)
224 COG5107 RNA14 Pre-mRNA 3'-end 81.7 40 0.00088 30.5 14.2 135 109-252 410-546 (660)
225 cd00923 Cyt_c_Oxidase_Va Cytoc 81.4 16 0.00034 25.5 7.4 33 127-159 37-69 (103)
226 PF11848 DUF3368: Domain of un 81.3 7 0.00015 23.2 5.1 31 181-211 14-44 (48)
227 PF11838 ERAP1_C: ERAP1-like C 81.1 33 0.00071 29.0 13.5 109 112-227 146-260 (324)
228 TIGR02508 type_III_yscG type I 80.4 18 0.00038 25.5 8.5 87 148-246 21-107 (115)
229 KOG4555 TPR repeat-containing 80.4 22 0.00047 26.5 11.5 105 141-249 52-168 (175)
230 PF00515 TPR_1: Tetratricopept 80.0 5.5 0.00012 21.1 4.1 27 206-232 3-29 (34)
231 COG3898 Uncharacterized membra 79.8 44 0.00094 29.7 14.4 149 81-242 74-225 (531)
232 PF02284 COX5A: Cytochrome c o 78.8 20 0.00044 25.2 7.3 30 168-197 44-73 (108)
233 PF04053 Coatomer_WDAD: Coatom 78.6 51 0.0011 29.8 13.6 85 129-230 344-428 (443)
234 PF11846 DUF3366: Domain of un 78.6 13 0.00029 29.1 7.5 33 200-232 140-172 (193)
235 PF07079 DUF1347: Protein of u 78.0 53 0.0012 29.7 13.5 137 112-254 22-180 (549)
236 PF13281 DUF4071: Domain of un 77.8 38 0.00083 29.8 10.5 76 174-251 146-227 (374)
237 PF11663 Toxin_YhaV: Toxin wit 77.6 2.4 5.3E-05 31.3 2.7 29 218-250 109-137 (140)
238 smart00299 CLH Clathrin heavy 77.5 25 0.00055 25.7 13.8 87 135-231 10-96 (140)
239 KOG3060 Uncharacterized conser 77.5 40 0.00088 28.0 14.3 117 110-233 100-220 (289)
240 TIGR03504 FimV_Cterm FimV C-te 76.7 5.4 0.00012 23.3 3.5 25 175-199 5-29 (44)
241 KOG1156 N-terminal acetyltrans 76.3 57 0.0012 30.7 11.5 58 140-200 413-470 (700)
242 TIGR02561 HrpB1_HrpK type III 76.2 31 0.00068 26.1 10.9 84 144-234 22-107 (153)
243 PF09613 HrpB1_HrpK: Bacterial 76.1 33 0.00071 26.3 13.5 105 110-225 24-130 (160)
244 COG4455 ImpE Protein of avirul 75.9 24 0.00051 28.7 7.9 66 111-178 16-81 (273)
245 PF13525 YfiO: Outer membrane 75.1 27 0.00058 27.7 8.4 60 175-234 11-72 (203)
246 PF11848 DUF3368: Domain of un 74.4 14 0.00031 21.8 5.1 37 211-249 9-45 (48)
247 PF11207 DUF2989: Protein of u 73.9 44 0.00095 26.7 9.8 73 149-224 123-198 (203)
248 PF14669 Asp_Glu_race_2: Putat 73.0 9 0.00019 30.3 4.9 57 173-229 136-206 (233)
249 PF07721 TPR_4: Tetratricopept 72.9 7.3 0.00016 19.5 3.1 18 175-192 7-24 (26)
250 PF10366 Vps39_1: Vacuolar sor 72.8 31 0.00067 24.4 7.7 26 172-197 42-67 (108)
251 PRK10564 maltose regulon perip 72.1 8.6 0.00019 32.5 5.0 36 172-207 260-295 (303)
252 KOG2280 Vacuolar assembly/sort 72.0 19 0.00041 34.4 7.5 84 130-230 713-796 (829)
253 PF04053 Coatomer_WDAD: Coatom 71.9 62 0.0013 29.3 10.7 93 133-234 296-403 (443)
254 PF11207 DUF2989: Protein of u 71.9 49 0.0011 26.4 9.0 82 175-258 113-195 (203)
255 TIGR02561 HrpB1_HrpK type III 71.7 41 0.0009 25.5 8.2 74 171-253 9-88 (153)
256 COG4105 ComL DNA uptake lipopr 71.5 57 0.0012 27.0 11.3 85 130-216 33-118 (254)
257 KOG3060 Uncharacterized conser 71.3 59 0.0013 27.1 14.9 115 113-234 69-184 (289)
258 cd00280 TRFH Telomeric Repeat 71.3 36 0.00079 26.8 7.8 68 112-184 85-158 (200)
259 PF14938 SNAP: Soluble NSF att 71.2 60 0.0013 27.1 13.1 121 111-232 130-265 (282)
260 PF13174 TPR_6: Tetratricopept 71.1 4.9 0.00011 20.9 2.3 21 213-233 9-29 (33)
261 PF11846 DUF3366: Domain of un 71.0 28 0.0006 27.2 7.6 60 137-198 113-173 (193)
262 KOG1585 Protein required for f 70.5 61 0.0013 26.9 9.3 153 97-253 59-240 (308)
263 PF13512 TPR_18: Tetratricopep 70.1 44 0.00094 25.1 9.9 79 172-253 14-94 (142)
264 COG4003 Uncharacterized protei 69.8 7.8 0.00017 25.9 3.3 26 174-199 36-61 (98)
265 KOG1127 TPR repeat-containing 69.1 38 0.00082 33.7 8.9 30 203-232 595-624 (1238)
266 PF08311 Mad3_BUB1_I: Mad3/BUB 68.4 43 0.00094 24.4 8.4 43 150-193 81-123 (126)
267 PF00515 TPR_1: Tetratricopept 68.1 16 0.00034 19.2 4.4 28 170-197 2-29 (34)
268 KOG0548 Molecular co-chaperone 67.8 1E+02 0.0022 28.4 14.1 143 95-253 297-471 (539)
269 PF09454 Vps23_core: Vps23 cor 67.8 16 0.00035 23.3 4.5 47 170-217 9-55 (65)
270 KOG4162 Predicted calmodulin-b 67.8 80 0.0017 30.4 10.6 103 127-232 318-422 (799)
271 PRK10866 outer membrane biogen 67.7 67 0.0015 26.3 14.6 140 111-257 47-228 (243)
272 KOG3617 WD40 and TPR repeat-co 67.6 66 0.0014 31.6 10.0 53 102-161 734-786 (1416)
273 PF10366 Vps39_1: Vacuolar sor 66.7 43 0.00093 23.7 7.3 27 206-232 41-67 (108)
274 PF07163 Pex26: Pex26 protein; 66.7 79 0.0017 26.7 10.0 90 136-227 87-181 (309)
275 COG4235 Cytochrome c biogenesi 66.6 79 0.0017 26.7 9.8 103 105-214 165-270 (287)
276 COG0735 Fur Fe2+/Zn2+ uptake r 65.7 42 0.0009 25.2 7.2 26 138-163 26-51 (145)
277 PF07719 TPR_2: Tetratricopept 65.4 18 0.00038 18.8 4.1 21 212-232 9-29 (34)
278 KOG3617 WD40 and TPR repeat-co 64.9 41 0.0009 32.9 8.2 105 112-231 816-939 (1416)
279 PRK10564 maltose regulon perip 64.6 15 0.00033 31.1 5.0 47 199-247 251-298 (303)
280 KOG2908 26S proteasome regulat 63.6 1E+02 0.0022 26.8 9.6 52 181-232 87-143 (380)
281 COG5108 RPO41 Mitochondrial DN 63.6 43 0.00093 31.8 7.9 92 137-231 33-130 (1117)
282 PF10579 Rapsyn_N: Rapsyn N-te 63.5 31 0.00068 23.0 5.3 46 181-226 18-65 (80)
283 KOG0548 Molecular co-chaperone 63.4 59 0.0013 29.8 8.6 83 110-197 16-98 (539)
284 TIGR03504 FimV_Cterm FimV C-te 62.7 16 0.00036 21.2 3.5 25 210-234 5-29 (44)
285 PF07079 DUF1347: Protein of u 62.6 1.2E+02 0.0027 27.5 10.5 83 135-217 80-180 (549)
286 PF14689 SPOB_a: Sensor_kinase 62.1 14 0.00029 23.3 3.3 46 185-232 6-51 (62)
287 KOG4077 Cytochrome c oxidase, 61.6 63 0.0014 23.9 7.8 45 151-197 68-112 (149)
288 COG2178 Predicted RNA-binding 61.6 80 0.0017 25.1 9.9 97 135-232 32-149 (204)
289 PF07035 Mic1: Colon cancer-as 61.5 73 0.0016 24.6 13.5 102 116-230 14-115 (167)
290 PF13431 TPR_17: Tetratricopep 60.1 11 0.00024 20.3 2.4 22 168-189 12-33 (34)
291 KOG0553 TPR repeat-containing 60.0 1.1E+02 0.0024 26.1 10.1 92 112-211 97-189 (304)
292 KOG1125 TPR repeat-containing 59.9 1E+02 0.0022 28.6 9.5 94 148-248 410-506 (579)
293 cd08819 CARD_MDA5_2 Caspase ac 59.5 53 0.0012 22.4 7.4 66 151-224 21-86 (88)
294 KOG2908 26S proteasome regulat 59.1 1.2E+02 0.0026 26.4 10.4 87 136-222 79-175 (380)
295 COG1729 Uncharacterized protei 58.4 1.1E+02 0.0024 25.6 11.1 84 112-198 157-244 (262)
296 KOG1538 Uncharacterized conser 58.0 78 0.0017 30.1 8.5 91 132-235 747-848 (1081)
297 COG5108 RPO41 Mitochondrial DN 57.5 83 0.0018 30.1 8.6 79 112-195 44-129 (1117)
298 PRK11906 transcriptional regul 56.9 1.5E+02 0.0033 26.8 14.7 114 112-232 274-400 (458)
299 PF10579 Rapsyn_N: Rapsyn N-te 56.5 30 0.00066 23.0 4.3 48 144-191 18-65 (80)
300 KOG4648 Uncharacterized conser 56.5 42 0.0009 29.3 6.2 75 140-226 105-180 (536)
301 KOG2047 mRNA splicing factor [ 55.6 1.9E+02 0.0042 27.6 11.5 107 112-232 91-197 (835)
302 PF09477 Type_III_YscG: Bacter 55.2 74 0.0016 22.7 9.3 87 146-244 20-106 (116)
303 KOG0495 HAT repeat protein [RN 55.0 2E+02 0.0044 27.6 15.6 117 112-234 532-648 (913)
304 PF08870 DUF1832: Domain of un 54.4 46 0.00099 23.8 5.4 89 113-218 6-96 (113)
305 PRK08691 DNA polymerase III su 54.3 2.1E+02 0.0046 27.6 12.0 90 112-204 180-280 (709)
306 PF13181 TPR_8: Tetratricopept 54.0 31 0.00066 17.9 4.2 25 172-196 4-28 (34)
307 cd08789 CARD_IPS-1_RIG-I Caspa 53.9 64 0.0014 21.7 5.8 49 135-190 35-83 (84)
308 TIGR03581 EF_0839 conserved hy 53.9 52 0.0011 26.6 6.0 87 109-196 134-235 (236)
309 PRK09857 putative transposase; 53.5 1.4E+02 0.003 25.3 9.2 64 172-236 209-272 (292)
310 PF14689 SPOB_a: Sensor_kinase 53.3 24 0.00051 22.2 3.4 25 173-197 27-51 (62)
311 PF09868 DUF2095: Uncharacteri 53.0 65 0.0014 23.1 5.7 25 175-199 67-91 (128)
312 PF11817 Foie-gras_1: Foie gra 52.7 1E+02 0.0023 25.2 8.0 60 172-231 181-245 (247)
313 PRK14963 DNA polymerase III su 52.7 1.9E+02 0.0042 26.7 11.4 91 111-204 176-276 (504)
314 KOG1174 Anaphase-promoting com 52.6 1.8E+02 0.0039 26.3 14.5 120 110-234 348-501 (564)
315 KOG2911 Uncharacterized conser 52.4 70 0.0015 28.5 7.1 104 134-256 80-203 (439)
316 KOG0543 FKBP-type peptidyl-pro 52.3 1.7E+02 0.0037 26.0 10.6 96 132-232 257-354 (397)
317 KOG2114 Vacuolar assembly/sort 51.0 1.2E+02 0.0025 29.8 8.6 56 137-195 402-457 (933)
318 KOG1156 N-terminal acetyltrans 50.6 2.3E+02 0.005 27.0 12.9 101 129-234 366-469 (700)
319 smart00028 TPR Tetratricopepti 50.5 29 0.00062 16.6 3.8 24 208-231 5-28 (34)
320 PRK14958 DNA polymerase III su 50.5 2.1E+02 0.0045 26.5 13.0 90 113-205 181-281 (509)
321 KOG1174 Anaphase-promoting com 50.4 1.9E+02 0.0042 26.1 12.1 123 125-257 225-384 (564)
322 smart00777 Mad3_BUB1_I Mad3/BU 50.4 95 0.002 22.7 6.6 41 151-192 82-122 (125)
323 KOG0550 Molecular chaperone (D 50.2 1.9E+02 0.0042 26.0 9.8 136 112-255 219-371 (486)
324 COG3947 Response regulator con 50.0 1.5E+02 0.0033 25.3 8.4 59 171-230 281-339 (361)
325 PF00637 Clathrin: Region in C 49.9 4.1 8.9E-05 30.1 -0.6 56 173-228 11-66 (143)
326 KOG4567 GTPase-activating prot 49.0 79 0.0017 27.1 6.6 58 189-253 263-320 (370)
327 PRK11639 zinc uptake transcrip 48.8 1.2E+02 0.0026 23.3 7.8 70 116-188 10-79 (169)
328 PF09454 Vps23_core: Vps23 cor 48.6 52 0.0011 21.0 4.4 49 202-253 6-54 (65)
329 PRK14951 DNA polymerase III su 47.7 2.6E+02 0.0055 26.7 12.0 90 112-204 185-285 (618)
330 cd08812 CARD_RIG-I_like Caspas 46.9 74 0.0016 21.5 5.3 48 136-189 38-86 (88)
331 KOG2297 Predicted translation 46.6 58 0.0013 27.9 5.5 28 112-146 183-210 (412)
332 cd07153 Fur_like Ferric uptake 46.5 60 0.0013 22.8 5.1 49 137-187 5-53 (116)
333 PF13281 DUF4071: Domain of un 46.3 2.1E+02 0.0046 25.3 12.5 96 137-232 146-254 (374)
334 smart00638 LPD_N Lipoprotein N 46.1 2.5E+02 0.0055 26.1 12.8 85 132-219 340-433 (574)
335 PF03745 DUF309: Domain of unk 45.9 74 0.0016 20.0 5.8 48 180-227 10-62 (62)
336 PF00772 DnaB: DnaB-like helic 45.6 95 0.0021 21.1 6.5 7 152-158 24-30 (103)
337 TIGR03184 DNA_S_dndE DNA sulfu 45.0 73 0.0016 22.5 5.1 91 113-218 5-98 (105)
338 KOG4555 TPR repeat-containing 44.8 1.3E+02 0.0028 22.5 9.1 86 112-199 59-145 (175)
339 PF10475 DUF2450: Protein of u 44.3 1.4E+02 0.003 25.2 7.7 25 202-226 195-219 (291)
340 PF02847 MA3: MA3 domain; Int 43.6 80 0.0017 22.0 5.3 60 136-199 6-67 (113)
341 PRK06645 DNA polymerase III su 43.4 2.7E+02 0.0059 25.7 12.0 91 112-205 189-293 (507)
342 COG3947 Response regulator con 43.2 2.1E+02 0.0046 24.5 14.6 138 112-256 149-328 (361)
343 PRK09462 fur ferric uptake reg 43.0 1.3E+02 0.0029 22.3 6.7 59 125-186 10-69 (148)
344 PRK11639 zinc uptake transcrip 42.5 1.6E+02 0.0034 22.7 7.3 64 156-222 15-78 (169)
345 PF02184 HAT: HAT (Half-A-TPR) 42.1 36 0.00079 18.4 2.4 23 219-245 2-24 (32)
346 KOG0403 Neoplastic transformat 41.9 2.8E+02 0.006 25.4 10.3 75 136-217 513-587 (645)
347 PF02607 B12-binding_2: B12 bi 41.7 57 0.0012 21.1 4.1 39 180-218 12-50 (79)
348 smart00164 TBC Domain in Tre-2 40.4 99 0.0021 24.0 5.9 46 189-234 151-197 (199)
349 PF08631 SPO22: Meiosis protei 40.3 2.2E+02 0.0047 23.7 15.9 137 112-255 103-253 (278)
350 PF01475 FUR: Ferric uptake re 39.9 62 0.0013 23.0 4.3 30 176-205 14-43 (120)
351 KOG0991 Replication factor C, 39.8 1.4E+02 0.0031 24.7 6.6 32 172-204 242-273 (333)
352 KOG1538 Uncharacterized conser 39.8 1.2E+02 0.0025 29.1 6.7 17 178-194 641-657 (1081)
353 cd08315 Death_TRAILR_DR4_DR5 D 39.4 1.2E+02 0.0025 21.0 5.4 47 148-199 47-94 (96)
354 cd07153 Fur_like Ferric uptake 38.0 1E+02 0.0023 21.5 5.3 35 184-218 15-49 (116)
355 PF14669 Asp_Glu_race_2: Putat 37.8 96 0.0021 24.7 5.1 58 137-194 137-206 (233)
356 KOG4162 Predicted calmodulin-b 37.6 4E+02 0.0086 26.0 13.5 97 133-233 685-783 (799)
357 PF11817 Foie-gras_1: Foie gra 37.4 2.1E+02 0.0046 23.4 7.6 58 138-196 184-245 (247)
358 COG2812 DnaX DNA polymerase II 37.2 3.4E+02 0.0075 25.2 10.0 91 110-206 178-282 (515)
359 PRK14956 DNA polymerase III su 37.1 3.4E+02 0.0073 25.0 12.6 93 112-206 182-285 (484)
360 PF07035 Mic1: Colon cancer-as 36.8 2E+02 0.0043 22.2 11.1 58 151-214 13-70 (167)
361 KOG0687 26S proteasome regulat 36.8 2.9E+02 0.0062 24.1 10.5 114 118-234 56-174 (393)
362 PF02607 B12-binding_2: B12 bi 36.0 69 0.0015 20.7 3.7 39 215-255 12-50 (79)
363 KOG4077 Cytochrome c oxidase, 35.9 1.8E+02 0.0039 21.5 7.2 57 117-177 70-126 (149)
364 TIGR03581 EF_0839 conserved hy 35.7 99 0.0022 25.0 5.0 84 148-231 137-235 (236)
365 KOG1127 TPR repeat-containing 35.4 4.9E+02 0.011 26.5 10.3 79 112-197 578-658 (1238)
366 smart00386 HAT HAT (Half-A-TPR 35.3 63 0.0014 16.1 3.8 16 218-233 1-16 (33)
367 PF08311 Mad3_BUB1_I: Mad3/BUB 34.9 1.8E+02 0.0038 21.1 7.7 57 171-229 67-124 (126)
368 cd08315 Death_TRAILR_DR4_DR5 D 34.4 1.5E+02 0.0033 20.4 5.4 30 205-234 65-94 (96)
369 PRK07003 DNA polymerase III su 34.1 4.7E+02 0.01 25.8 12.5 89 112-203 180-279 (830)
370 KOG1550 Extracellular protein 34.1 3.9E+02 0.0085 24.9 10.6 117 112-234 228-358 (552)
371 PF08780 NTase_sub_bind: Nucle 33.8 68 0.0015 23.3 3.7 102 112-231 6-108 (124)
372 KOG2659 LisH motif-containing 33.8 2.6E+02 0.0057 22.8 9.9 102 127-230 21-129 (228)
373 COG0292 RplT Ribosomal protein 33.4 1.2E+02 0.0026 21.6 4.6 42 130-178 71-112 (118)
374 KOG3807 Predicted membrane pro 33.2 3.3E+02 0.0073 23.8 9.4 63 168-232 272-339 (556)
375 PF07218 RAP1: Rhoptry-associa 32.6 2.2E+02 0.0048 26.5 7.2 66 178-251 587-659 (782)
376 PF04034 DUF367: Domain of unk 32.0 68 0.0015 23.5 3.3 60 131-195 65-125 (127)
377 cd08318 Death_NMPP84 Death dom 30.7 92 0.002 20.9 3.7 21 171-191 65-85 (86)
378 PRK12356 glutaminase; Reviewed 30.6 3.6E+02 0.0077 23.3 8.4 81 148-236 139-221 (319)
379 cd07229 Pat_TGL3_like Triacylg 30.0 2.4E+02 0.0052 25.1 7.0 131 117-255 100-251 (391)
380 PRK15180 Vi polysaccharide bio 29.9 4.5E+02 0.0099 24.3 9.1 112 114-232 308-419 (831)
381 COG5210 GTPase-activating prot 29.9 1.6E+02 0.0035 27.0 6.2 48 188-235 361-408 (496)
382 PF01475 FUR: Ferric uptake re 29.9 1.1E+02 0.0025 21.6 4.3 47 136-184 11-57 (120)
383 PF12793 SgrR_N: Sugar transpo 29.6 2.1E+02 0.0046 20.4 7.5 75 116-193 3-94 (115)
384 PRK12928 lipoyl synthase; Prov 29.6 74 0.0016 26.9 3.7 80 152-235 153-233 (290)
385 PF12796 Ank_2: Ankyrin repeat 29.6 1.2E+02 0.0025 19.8 4.1 77 141-234 3-82 (89)
386 KOG0276 Vesicle coat complex C 29.2 5.1E+02 0.011 24.7 10.8 83 131-230 665-747 (794)
387 TIGR02508 type_III_yscG type I 29.2 2E+02 0.0044 20.3 5.1 58 185-249 21-78 (115)
388 cd08819 CARD_MDA5_2 Caspase ac 28.8 1.9E+02 0.0042 19.7 7.0 40 144-190 48-87 (88)
389 PF10475 DUF2450: Protein of u 28.6 2.7E+02 0.0058 23.5 7.0 24 173-196 131-154 (291)
390 PF14840 DNA_pol3_delt_C: Proc 28.5 59 0.0013 23.7 2.6 21 145-165 10-30 (125)
391 COG2042 Uncharacterized conser 28.5 2.1E+02 0.0046 22.1 5.5 60 132-196 115-175 (179)
392 COG0735 Fur Fe2+/Zn2+ uptake r 28.5 2.5E+02 0.0054 20.9 7.9 66 152-220 6-71 (145)
393 KOG1147 Glutamyl-tRNA syntheta 28.1 73 0.0016 29.5 3.5 65 125-197 261-331 (712)
394 PHA02875 ankyrin repeat protei 28.1 99 0.0021 27.2 4.5 82 138-228 71-156 (413)
395 PF12816 Vps8: Golgi CORVET co 27.8 1.6E+02 0.0035 23.2 5.2 29 168-196 21-49 (196)
396 TIGR01503 MthylAspMut_E methyl 27.2 1.7E+02 0.0037 26.6 5.6 75 111-197 29-114 (480)
397 PRK09857 putative transposase; 27.0 3.9E+02 0.0085 22.6 8.4 69 133-204 207-275 (292)
398 COG4003 Uncharacterized protei 26.9 1.2E+02 0.0025 20.5 3.4 32 198-235 31-62 (98)
399 PRK07374 dnaE DNA polymerase I 26.3 4.5E+02 0.0099 27.3 9.0 62 136-200 728-812 (1170)
400 TIGR00510 lipA lipoate synthas 26.2 94 0.002 26.5 3.8 80 152-235 156-236 (302)
401 PF02847 MA3: MA3 domain; Int 26.1 1.2E+02 0.0025 21.2 3.8 23 174-196 7-29 (113)
402 TIGR02397 dnaX_nterm DNA polym 26.1 4.2E+02 0.009 22.6 13.6 88 112-202 178-276 (355)
403 cd04445 DEP_PLEK1 DEP (Disheve 25.9 1.5E+02 0.0033 20.6 4.0 52 184-235 11-65 (99)
404 KOG2114 Vacuolar assembly/sort 25.8 1.9E+02 0.0041 28.4 5.9 77 174-256 710-786 (933)
405 cd08318 Death_NMPP84 Death dom 25.6 1.3E+02 0.0029 20.1 3.8 39 113-154 47-85 (86)
406 smart00544 MA3 Domain in DAP-5 25.4 2.4E+02 0.0051 19.6 8.1 97 136-250 6-104 (113)
407 KOG4567 GTPase-activating prot 25.3 4.5E+02 0.0098 22.8 8.2 71 152-229 263-343 (370)
408 smart00777 Mad3_BUB1_I Mad3/BU 25.1 2E+02 0.0044 21.0 4.9 43 186-228 80-123 (125)
409 PF14853 Fis1_TPR_C: Fis1 C-te 24.9 1.7E+02 0.0036 17.7 4.2 20 213-232 10-29 (53)
410 COG3118 Thioredoxin domain-con 24.9 4.4E+02 0.0095 22.5 10.1 111 140-258 142-253 (304)
411 PHA02743 Viral ankyrin protein 24.9 1.6E+02 0.0035 22.2 4.6 19 144-162 29-47 (166)
412 PF08542 Rep_fac_C: Replicatio 24.8 2.1E+02 0.0046 18.8 5.9 44 135-182 8-51 (89)
413 KOG0276 Vesicle coat complex C 24.6 4.5E+02 0.0098 25.1 7.8 56 170-234 667-722 (794)
414 smart00804 TAP_C C-terminal do 24.6 93 0.002 19.7 2.6 31 172-203 29-60 (63)
415 COG4700 Uncharacterized protei 24.4 3.7E+02 0.0081 21.5 13.2 117 112-233 105-226 (251)
416 COG2405 Predicted nucleic acid 24.4 1.7E+02 0.0038 21.9 4.3 30 182-211 122-151 (157)
417 KOG1166 Mitotic checkpoint ser 24.2 1.9E+02 0.004 29.2 5.8 61 144-205 90-150 (974)
418 COG5210 GTPase-activating prot 24.1 2.5E+02 0.0054 25.8 6.4 60 151-212 361-420 (496)
419 PF11491 DUF3213: Protein of u 23.8 10 0.00022 25.3 -1.9 24 125-148 17-40 (88)
420 PF00566 RabGAP-TBC: Rab-GTPas 23.8 1.4E+02 0.003 23.3 4.2 45 189-234 149-193 (214)
421 PF13934 ELYS: Nuclear pore co 23.7 4E+02 0.0086 21.6 9.2 95 125-232 72-168 (226)
422 PHA02875 ankyrin repeat protei 23.7 1.6E+02 0.0034 25.9 5.0 107 116-228 15-123 (413)
423 PRK02287 hypothetical protein; 23.5 1.6E+02 0.0035 22.8 4.2 60 132-196 107-167 (171)
424 KOG0403 Neoplastic transformat 23.1 5.6E+02 0.012 23.5 7.9 63 172-235 512-574 (645)
425 KOG1920 IkappaB kinase complex 23.1 4.2E+02 0.009 27.3 7.7 21 175-195 971-991 (1265)
426 PF07064 RIC1: RIC1; InterPro 22.9 4.5E+02 0.0097 21.9 12.8 89 135-234 156-250 (258)
427 PRK09462 fur ferric uptake reg 22.6 3.3E+02 0.0071 20.2 7.1 63 155-220 5-68 (148)
428 KOG2297 Predicted translation 22.5 5.1E+02 0.011 22.5 8.2 18 171-188 323-340 (412)
429 PF09868 DUF2095: Uncharacteri 22.5 3.1E+02 0.0066 19.8 5.8 47 198-253 61-107 (128)
430 PF05664 DUF810: Protein of un 22.2 5.7E+02 0.012 24.7 8.4 71 162-234 212-296 (677)
431 TIGR01428 HAD_type_II 2-haloal 22.0 3.7E+02 0.008 20.6 7.0 48 117-164 63-110 (198)
432 cd00045 DED The Death Effector 21.9 1.4E+02 0.0031 19.5 3.3 12 151-162 39-50 (77)
433 PF09797 NatB_MDM20: N-acetylt 21.4 5.1E+02 0.011 22.5 7.6 70 136-208 184-256 (365)
434 PF10963 DUF2765: Protein of u 21.3 1.6E+02 0.0036 19.8 3.4 33 127-159 11-43 (83)
435 PRK07764 DNA polymerase III su 21.3 8.2E+02 0.018 24.3 14.1 86 112-201 181-279 (824)
436 COG4649 Uncharacterized protei 21.1 4.2E+02 0.0092 21.0 16.0 128 112-243 74-204 (221)
437 PRK14971 DNA polymerase III su 21.1 7.3E+02 0.016 23.6 12.0 89 112-203 182-281 (614)
438 cd08812 CARD_RIG-I_like Caspas 21.0 2.7E+02 0.0059 18.7 7.2 15 218-232 48-62 (88)
439 PLN03025 replication factor C 21.0 5.2E+02 0.011 21.9 11.1 91 149-246 162-264 (319)
440 PF14649 Spatacsin_C: Spatacsi 20.8 4.5E+02 0.0098 22.4 6.8 68 130-198 18-88 (296)
441 smart00031 DED Death effector 20.7 1.8E+02 0.0038 19.1 3.6 13 186-198 38-50 (79)
442 COG4865 Glutamate mutase epsil 20.4 5.9E+02 0.013 22.3 7.3 76 112-199 32-118 (485)
443 cd08780 Death_TRADD Death Doma 20.4 2.5E+02 0.0054 19.2 4.1 48 140-192 40-88 (90)
444 PF13934 ELYS: Nuclear pore co 20.2 4.7E+02 0.01 21.1 8.7 93 112-218 94-186 (226)
445 KOG0911 Glutaredoxin-related p 20.2 83 0.0018 25.5 2.1 51 1-58 142-192 (227)
446 TIGR02710 CRISPR-associated pr 20.2 5.1E+02 0.011 23.0 7.1 51 179-229 140-196 (380)
447 PF09670 Cas_Cas02710: CRISPR- 20.2 5.6E+02 0.012 22.6 7.6 57 140-197 139-197 (379)
448 cd01670 Death Death Domain: a 20.2 2.5E+02 0.0054 17.9 4.3 39 148-190 38-76 (79)
449 KOG3154 Uncharacterized conser 20.1 1.6E+02 0.0035 23.9 3.6 57 134-195 149-206 (263)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.96 E-value=1.6e-28 Score=235.29 Aligned_cols=141 Identities=21% Similarity=0.280 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+++|.++|++|. ..|+.||..+|++||.+|++.|++++|.++|++|.+.|+.| |..+||+||++|++.|++++|.++
T Consensus 630 ~deAl~lf~eM~-~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p--d~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 630 WDFALSIYDDMK-KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL--GTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 568888888887 45788888888888888888888888888888888888777 888888888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|++|.+.|+.||.+|||+||.+||+.|++++|.++|++|...|+. ||..||++||.+|++.|++
T Consensus 707 f~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~--Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC--PNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHCCCH
Confidence 888888888888888888888888888888888888888888855 8888888888888888765
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.96 E-value=1.9e-28 Score=234.73 Aligned_cols=143 Identities=18% Similarity=0.256 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+++|+++|++|. ..|+.||..+||+||.+|++.|++++|.++|++|.+.+.+..||.+||++||++|++.|++++|.++
T Consensus 523 ~eeAl~lf~~M~-~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 523 VAKAFGAYGIMR-SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 346666666665 3466666666666666666666666666666666553222223666666666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|++|.+.|+.|+..+||++|.+|++.|++++|.++|++|...|+. ||..||++||.+|++.|++
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~--PD~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK--PDEVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhCCCH
Confidence 666666666666666666666666666666666666666666643 6666666666666666653
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.95 E-value=6.4e-28 Score=226.36 Aligned_cols=154 Identities=20% Similarity=0.196 Sum_probs=111.1
Q ss_pred HHHHHHHHHhCccCCCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc
Q 047392 88 DNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV 167 (258)
Q Consensus 88 ~~~~~~~l~~g~~~~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 167 (258)
+...||.++.|+...+. .++|+++|++|. ..|+.||..||+++|.+|++.|++++|.+++++|.+.|+.|
T Consensus 289 ~~vt~n~li~~y~~~g~-------~~eA~~lf~~M~-~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~-- 358 (697)
T PLN03081 289 TTVAWNSMLAGYALHGY-------SEEALCLYYEMR-DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL-- 358 (697)
T ss_pred ChhHHHHHHHHHHhCCC-------HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC--
Confidence 34456666666666655 459999999998 56999999999999999999999999999999999998776
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
|..+||+||++|+++|++++|.++|++|.+ ||++|||+||.+|++.|+.++|.++|++|...|+. ||..||+++
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~--Pd~~T~~~l 432 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA--PNHVTFLAV 432 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CCHHHHHHH
Confidence 555666666666666666666666666643 56666666666666666666666666666666643 666666666
Q ss_pred HHHHHHcCCC
Q 047392 248 ISSYCKYGMQ 257 (258)
Q Consensus 248 i~~~~~~g~~ 257 (258)
|++|++.|++
T Consensus 433 l~a~~~~g~~ 442 (697)
T PLN03081 433 LSACRYSGLS 442 (697)
T ss_pred HHHHhcCCcH
Confidence 6666666654
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.94 E-value=1.4e-26 Score=217.41 Aligned_cols=170 Identities=15% Similarity=0.131 Sum_probs=125.8
Q ss_pred HhhhhhHHHHHHHHHHHHhCccCCCCccccc-------cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHH
Q 047392 79 KQRILKKEADNIANNVLVLGPAAYRNPQKVT-------LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGL 151 (258)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~-------~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a 151 (258)
.+.+..+++..++..|...|..++..++... ..+++|.+++++|. +.|+.||..+||+||.+|+++|++++|
T Consensus 301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~-~~g~~~d~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI-RTGFPLDIVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH-HhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence 4555566666666666666665555555442 23667888888887 457788888888888888888888888
Q ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 152 ~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
.++|++|.+ + |++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||+++|.+|++.|++++|.++|++|.
T Consensus 380 ~~vf~~m~~----~--d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 380 RNVFDRMPR----K--NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHHHhCCC----C--CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 888888743 2 6677888888888888888888888888888888888888888888888888888888888886
Q ss_pred h-CCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 232 L-PGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 232 ~-~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
+ .|+. ||..+|++||++|++.|++
T Consensus 454 ~~~g~~--p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 454 ENHRIK--PRAMHYACMIELLGREGLL 478 (697)
T ss_pred HhcCCC--CCccchHhHHHHHHhcCCH
Confidence 5 4644 7777777777777777765
No 5
>PLN03077 Protein ECB2; Provisional
Probab=99.93 E-value=1.4e-25 Score=214.92 Aligned_cols=153 Identities=18% Similarity=0.118 Sum_probs=119.4
Q ss_pred HHHHHHHHhCccCCCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC
Q 047392 89 NIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT 168 (258)
Q Consensus 89 ~~~~~~l~~g~~~~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 168 (258)
...||.++.|+...+.. ++|+++|++|. ..|+.||..||+++|.+|++.|+++.|.+++..|.+.|+.| |
T Consensus 253 ~~s~n~li~~~~~~g~~-------~eAl~lf~~M~-~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~--d 322 (857)
T PLN03077 253 CISWNAMISGYFENGEC-------LEGLELFFTMR-ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV--D 322 (857)
T ss_pred cchhHHHHHHHHhCCCH-------HHHHHHHHHHH-HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc--c
Confidence 34566666666655554 48889999988 55888888888888888888888888888888888888777 7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHH
Q 047392 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248 (258)
Q Consensus 169 ~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li 248 (258)
..+||+||++|++.|++++|.++|++|.. ||.++||+||.+|++.|++++|.++|++|...|+. ||..||+++|
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~--Pd~~t~~~ll 396 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS--PDEITIASVL 396 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--CCceeHHHHH
Confidence 77888888888888888888888888763 67777888888888888888888888888777744 7777777777
Q ss_pred HHHHHcCCC
Q 047392 249 SSYCKYGMQ 257 (258)
Q Consensus 249 ~~~~~~g~~ 257 (258)
.+|++.|++
T Consensus 397 ~a~~~~g~~ 405 (857)
T PLN03077 397 SACACLGDL 405 (857)
T ss_pred HHHhccchH
Confidence 777777664
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.92 E-value=7e-25 Score=210.18 Aligned_cols=191 Identities=16% Similarity=0.083 Sum_probs=153.9
Q ss_pred ccccccccCCCCCCcccch---hHhhhhhHHHHHHHHHHHHhCccCCCCccccc-------cCHHHHHHHHHHHHhhCCC
Q 047392 59 FFQSPRSIGRQTGFRHRTP---LKQRILKKEADNIANNVLVLGPAAYRNPQKVT-------LGINKATEFYHWVERFFHF 128 (258)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~-------~~~~~a~~~f~~m~~~~~~ 128 (258)
+.++|..+.+...+..+.- +.+.+..+++-.++..|...|..++..++... ..++.|.+++..|. +.|+
T Consensus 241 A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~-~~g~ 319 (857)
T PLN03077 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV-KTGF 319 (857)
T ss_pred HHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH-HhCC
Confidence 6666666654333333222 24555666677777777777766666555553 23778999999998 5599
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 047392 129 FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208 (258)
Q Consensus 129 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~ 208 (258)
.||..+||+||.+|++.|++++|.++|++|.+ | |.++||+||.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~--d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~ 393 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----K--DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----C--CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHH
Confidence 99999999999999999999999999999853 3 77789999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCCC
Q 047392 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258 (258)
Q Consensus 209 ~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~~ 258 (258)
++|.+|++.|++++|.+++++|.+.|+. ||..+|++||++|++.|+++
T Consensus 394 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~--~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 394 SVLSACACLGDLDVGVKLHELAERKGLI--SYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999965 99999999999999998753
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.69 E-value=6e-17 Score=99.90 Aligned_cols=48 Identities=40% Similarity=0.625 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~ 215 (258)
|++|||+||++|++.|++++|+++|++|++.|+.||..||++||++||
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 555555555555555555555555555555555555555555555554
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.67 E-value=2e-16 Score=97.52 Aligned_cols=50 Identities=46% Similarity=0.941 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 202 p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
||+++||+||++|++.|++++|.++|++|.+.|+. ||..||++||++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~--P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIK--PDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999965 999999999999986
No 9
>PF12854 PPR_1: PPR repeat
Probab=99.31 E-value=2.9e-12 Score=71.82 Aligned_cols=34 Identities=35% Similarity=0.773 Sum_probs=26.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 198 ~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
.|+.||.+|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677788888888888888888888888777774
No 10
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=9.2e-11 Score=100.09 Aligned_cols=119 Identities=15% Similarity=0.231 Sum_probs=104.3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 209 (258)
....||.+||.|+|+=...|.|.+++.+-.+...+. +..+||.+|.+-+-..+ .++..||.+..+.||..|||+
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv--~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKV--YREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhee--eHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 456789999999999999999999999998876544 88899999988654433 789999999999999999999
Q ss_pred HHHHHHHcCCHHH----HHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 210 VINALCRVGNFNK----ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 210 li~~~~~~g~~~~----a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
++++.++.|+++. |.++..||++-|+. |...+|-.+|..+++.++
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVe--PsLsSyh~iik~f~re~d 327 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVE--PSLSSYHLIIKNFKRESD 327 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCC--cchhhHHHHHHHhcccCC
Confidence 9999999998876 56778999999955 999999999999998875
No 11
>PF12854 PPR_1: PPR repeat
Probab=99.17 E-value=3.9e-11 Score=67.19 Aligned_cols=33 Identities=33% Similarity=0.376 Sum_probs=22.3
Q ss_pred CCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 162 GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 162 g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
|+.| |.+|||+||++||+.|++++|.++|++|+
T Consensus 2 G~~P--d~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEP--DVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCC--cHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4444 66677777777777777777777777663
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.03 E-value=1.8e-08 Score=88.33 Aligned_cols=134 Identities=11% Similarity=0.014 Sum_probs=111.5
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
...++|.+.|+++.+. .+.+...+..+...+.+.|++++|.+.++++.+.+ |.....+++.+..+|++.|+.++|.
T Consensus 194 ~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 194 GDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQD--PEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred CCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--hhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 4478999999998743 22345677788899999999999999999998763 3223457899999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
+.++++.+. .|+...++.+...+.+.|++++|..+|+++.... |+..+++.++..++.
T Consensus 270 ~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~----P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 270 EFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH----PSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----cCHHHHHHHHHHhhh
Confidence 999999875 4777788999999999999999999999998753 999999999988775
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=5e-09 Score=89.69 Aligned_cols=151 Identities=14% Similarity=0.149 Sum_probs=112.5
Q ss_pred HHHHHHhCccCCCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHH
Q 047392 91 ANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS 170 (258)
Q Consensus 91 ~~~~l~~g~~~~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 170 (258)
.+.+++.|.+.-.. .+.|.+++++-.. ...+.+..+||.+|.+-+-.- ..+++.+|......| |..
T Consensus 209 t~s~mI~Gl~K~~~-------~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~P--nl~ 274 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSS-------LERARELYKEHRA-AKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTP--NLF 274 (625)
T ss_pred hHHHHHHHHHHHHh-------HHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCC--chH
Confidence 34556677665532 6699999999884 466789999999997755332 278999999988877 999
Q ss_pred HHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHhHhC--CCCCCCCHH-
Q 047392 171 TVTCLIKVLGEEGLVNE----ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN-KARFLLEQMELP--GFRCPPDVY- 242 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~----a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~-~a~~~f~~M~~~--~~~~~pd~~- 242 (258)
|||++++|.++.|+++. |.+++.||++-|+.|...+|..+|.-+++.++.. .|..+..++... |..++|-..
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 99999999999998775 5678999999999999999999999999998864 456665555431 222224333
Q ss_pred ---HHHHHHHHHHHcC
Q 047392 243 ---TYTILISSYCKYG 255 (258)
Q Consensus 243 ---ty~~li~~~~~~g 255 (258)
-|..-++.|.+..
T Consensus 355 d~~FF~~AM~Ic~~l~ 370 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLR 370 (625)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 3555555555443
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.97 E-value=3.2e-08 Score=86.81 Aligned_cols=140 Identities=10% Similarity=-0.036 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 111 GINKATEFYHWVERFFHFFHN---EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~---~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
.+++|.+.|+.+.+.....+. ...|..+...+.+.|+.++|...|+++.+.. |. +...+..+...|.+.|++++
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~ 232 (389)
T PRK11788 156 DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQ-CVRASILLGDLALAQGDYAA 232 (389)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cC-CHHHHHHHHHHHHHCCCHHH
Confidence 366788888887643211111 1234556667778888888888888887653 21 34467777788888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|.++|+++.+.+-.....+++.+..+|++.|+.++|...++++.... |+...+..+...+.+.|+.
T Consensus 233 A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----p~~~~~~~la~~~~~~g~~ 298 (389)
T PRK11788 233 AIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY----PGADLLLALAQLLEEQEGP 298 (389)
T ss_pred HHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCchHHHHHHHHHHHhCCH
Confidence 88888888764322224567788888888888888888888887753 7777777788888887764
No 15
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.87 E-value=2.8e-09 Score=59.84 Aligned_cols=33 Identities=39% Similarity=0.444 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~ 203 (258)
|||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 16
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.79 E-value=9e-09 Score=57.51 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 047392 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202 (258)
Q Consensus 170 ~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p 202 (258)
+|||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
No 17
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.70 E-value=2.3e-08 Score=55.98 Aligned_cols=35 Identities=37% Similarity=0.702 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCH
Q 047392 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241 (258)
Q Consensus 205 ~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~ 241 (258)
+|||+||.+|++.|++++|.++|++|.+.|+. ||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~--p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIE--PDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--CCC
Confidence 37999999999999999999999999999955 983
No 18
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.63 E-value=2.7e-06 Score=81.57 Aligned_cols=136 Identities=8% Similarity=0.014 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|.++++.+.. ..+.+...|..+..++.+.|++++|.+.|+++.+.. +. +...+..+..+|.+.|++++|.++
T Consensus 583 ~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 583 LKKALAILNEAAD--AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PD--SALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred HHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC--ChHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555555542 223445556666666666666666666666655442 11 333455555555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
|+++.+.. +.+..+|..+...++..|++++|.++++.|...+. .+...+..+...+.+.|+
T Consensus 658 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 658 LKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP---KAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc---CChHHHHHHHHHHHHCCC
Confidence 55554421 22344455555555555555555555555544331 233344444444444443
No 19
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.62 E-value=6.1e-08 Score=54.05 Aligned_cols=34 Identities=29% Similarity=0.558 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC
Q 047392 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239 (258)
Q Consensus 204 ~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p 239 (258)
+.|||++|.+|++.|+++.|.++|++|++.|+. |
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~--P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVK--P 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--C
Confidence 368999999999999999999999999999955 7
No 20
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.62 E-value=3.6e-08 Score=53.75 Aligned_cols=29 Identities=31% Similarity=0.336 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFR 199 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g 199 (258)
|||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 21
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.61 E-value=2.3e-06 Score=82.03 Aligned_cols=136 Identities=12% Similarity=0.017 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
..++|.+.|+++.+. .+.+...+..+...+.+.|++++|.+.++++.+.. | .+..++..+...+...|++++|.+
T Consensus 616 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 616 DLNKAVSSFKKLLAL--QPDSALALLLLADAYAVMKNYAKAITSLKRALELK--P-DNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 356777777766532 12345556666667777777777777777766542 1 134466666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
+++.|.+.+ +.+...+..+...+.+.|++++|.+.|+++...+ |+..++..+..++.+.|+
T Consensus 691 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 691 IAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA----PSSQNAIKLHRALLASGN 751 (899)
T ss_pred HHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHCCC
Confidence 666666543 3455556666666666666666666666666543 444555555555655554
No 22
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.59 E-value=1.1e-06 Score=77.19 Aligned_cols=135 Identities=19% Similarity=0.230 Sum_probs=113.5
Q ss_pred HHHHHHhhC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047392 118 FYHWVERFF--HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195 (258)
Q Consensus 118 ~f~~m~~~~--~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M 195 (258)
++..|...+ +.+-+.....++++.+....+++++..++.+.....-....-..|..++|..|.+.|..+++++++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 555554433 455678889999999999999999999999888773222122236789999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHc
Q 047392 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254 (258)
Q Consensus 196 ~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~ 254 (258)
...|+-||..|||.||+.+.+.|++..|.++..+|...+.- .+..|+.-.+.+|.+.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~--~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEF--DNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhcc--CCchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998865 7888998888888775
No 23
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.54 E-value=7.7e-08 Score=52.37 Aligned_cols=31 Identities=29% Similarity=0.673 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCC
Q 047392 205 YAYNVVINALCRVGNFNKARFLLEQMELPGF 235 (258)
Q Consensus 205 ~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~ 235 (258)
+|||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999873
No 24
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.49 E-value=3.8e-06 Score=59.46 Aligned_cols=82 Identities=20% Similarity=0.186 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHhHhCCCCCCCCH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRC-RPDVYAYNVVINALCRVG--------NFNKARFLLEQMELPGFRCPPDV 241 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~-~p~~~ty~~li~~~~~~g--------~~~~a~~~f~~M~~~~~~~~pd~ 241 (258)
|-...|.-+...|++....-+|+..++.|+ .|++.+||.++.+.+++. ++-..+.+|+.|...+++ |+.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lK--P~~ 104 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLK--PND 104 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccC--CcH
Confidence 445566667777889999999999999888 889999999998888754 244578889999988855 999
Q ss_pred HHHHHHHHHHHHc
Q 047392 242 YTYTILISSYCKY 254 (258)
Q Consensus 242 ~ty~~li~~~~~~ 254 (258)
.||+.+|.++.+.
T Consensus 105 etYnivl~~Llkg 117 (120)
T PF08579_consen 105 ETYNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887764
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.33 E-value=8.2e-06 Score=68.55 Aligned_cols=141 Identities=13% Similarity=0.079 Sum_probs=106.8
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
..++++.++++........+.+...|..+-..+.+.|+.++|.+.+++..+.. | -|....+.++..+...|+.+++.
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--P-~~~~~~~~l~~~li~~~~~~~~~ 200 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD--P-DDPDARNALAWLLIDMGDYDEAR 200 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---T-T-HHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHCCChHHHH
Confidence 34778899999877554556788889999999999999999999999998874 2 14667899999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC-CHHHHHHHHHHHHHcCCCC
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP-DVYTYTILISSYCKYGMQT 258 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p-d~~ty~~li~~~~~~g~~~ 258 (258)
+++....+.. +.|...|..+-.++...|+.++|..+|++..... | |..+...+-.++.+.|+.+
T Consensus 201 ~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~----p~d~~~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 201 EALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN----PDDPLWLLAYADALEQAGRKD 265 (280)
T ss_dssp HHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS----TT-HHHHHHHHHHHT------
T ss_pred HHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc----ccccccccccccccccccccc
Confidence 9999987654 5566778899999999999999999999998754 5 7777888888888888754
No 26
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.32 E-value=9.5e-06 Score=75.43 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=75.9
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHH
Q 047392 167 VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246 (258)
Q Consensus 167 ~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~ 246 (258)
++..+|.+++++-.-.|+++.|..++.+|++.|++.+..-|..||-| .++...++.+..-|...|+. |+..||..
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~--p~seT~ad 276 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQ--PGSETQAD 276 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCC--CCcchhHH
Confidence 48889999999999999999999999999999999999999888877 88999999999999999966 99999988
Q ss_pred HHHHHHHcCC
Q 047392 247 LISSYCKYGM 256 (258)
Q Consensus 247 li~~~~~~g~ 256 (258)
-+..+..+|.
T Consensus 277 yvip~l~N~~ 286 (1088)
T KOG4318|consen 277 YVIPQLSNGQ 286 (1088)
T ss_pred HHHhhhcchh
Confidence 8777766553
No 27
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.28 E-value=1.5e-05 Score=56.44 Aligned_cols=80 Identities=11% Similarity=0.173 Sum_probs=69.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCC-CCCcCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHhCCCCCCHHH
Q 047392 136 KEMGIVFARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEG--------LVNEALATFYRMKQFRCRPDVYA 206 (258)
Q Consensus 136 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~t~~~li~~~~~~g--------~~~~a~~l~~~M~~~g~~p~~~t 206 (258)
...|..|...+++.....+|+.+++.|+ .| ++.+||.++.+.++.. ++-+.+.+++.|...+++|+..|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lP--sv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLP--SVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 4567777778999999999999999998 66 8889999999998875 35567889999999999999999
Q ss_pred HHHHHHHHHHc
Q 047392 207 YNVVINALCRV 217 (258)
Q Consensus 207 y~~li~~~~~~ 217 (258)
||.+|..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.27 E-value=0.00018 Score=57.49 Aligned_cols=142 Identities=11% Similarity=0.001 Sum_probs=96.2
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
..+.++|.+.|++..+. .+.+...+..+...+...|++++|.+.+++..+....+ .....+..+-.++...|++++|
T Consensus 78 ~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 78 LGELEKAEDSFRRALTL--NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP-QPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred cCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHcCCHHHH
Confidence 34577888888777642 22345566677777788888888888888877642111 1333566677778888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.+.|++..+.. +.+...+..+...+.+.|++++|..++++..... + .+...+..+...+.+.|+.
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~ 219 (234)
T TIGR02521 155 EKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTY-N--QTAESLWLGIRIARALGDV 219 (234)
T ss_pred HHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C--CCHHHHHHHHHHHHHHhhH
Confidence 88888877642 2245667777788888888888888888887652 2 4555666666666666553
No 29
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.26 E-value=2.5e-05 Score=61.91 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=82.6
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHcc-----CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcC-------
Q 047392 116 TEFYHWVERFFHFFHNEVTCKEMGIVFARG-----NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG------- 183 (258)
Q Consensus 116 ~~~f~~m~~~~~~~p~~~~y~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g------- 183 (258)
.+.|+... +-..|..+|..+|..+.+. |+++=....+..|.+-|+.- |..+|+.||+.+-+..
T Consensus 34 ~~~f~~~~---~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~k--DL~~Y~~LLDvFPKg~fvp~n~f 108 (228)
T PF06239_consen 34 EELFERAP---GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEK--DLEVYKALLDVFPKGKFVPRNFF 108 (228)
T ss_pred HHHHHHHh---hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcc--cHHHHHHHHHhCCCCCcccccHH
Confidence 45555543 3347888999999998744 77787888899999999877 8899999999998753
Q ss_pred ---------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047392 184 ---------LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (258)
Q Consensus 184 ---------~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 219 (258)
+-+-|++|+++|+..|+-||..|+..|++.|++.+.
T Consensus 109 Q~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 367799999999999999999999999999999875
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.26 E-value=0.0002 Score=57.20 Aligned_cols=138 Identities=11% Similarity=0.035 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|.+.|++.... .+.+...+..+...+...|+.++|.+.+++..+... . +...+..+...+...|++++|.+.
T Consensus 47 ~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~--~~~~~~~~~~~~~~~g~~~~A~~~ 121 (234)
T TIGR02521 47 LEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-N--NGDVLNNYGTFLCQQGKYEQAMQQ 121 (234)
T ss_pred HHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-C--CHHHHHHHHHHHHHcccHHHHHHH
Confidence 45777777766532 123355666667777777777777777777766531 1 334566677777777777777777
Q ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 192 FYRMKQFRC-RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~g~-~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|++...... ......+..+-..+.+.|+.++|...|++.....- .+...+..+...+.+.|+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 122 FEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP---QRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---CChHHHHHHHHHHHHcCCH
Confidence 777765321 22344555666667777777777777777766431 2344566666666666653
No 31
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.12 E-value=2.4e-05 Score=62.04 Aligned_cols=86 Identities=23% Similarity=0.320 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----------------CHHHHHHH
Q 047392 168 TTSTVTCLIKVLGEE-----GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG----------------NFNKARFL 226 (258)
Q Consensus 168 ~~~t~~~li~~~~~~-----g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g----------------~~~~a~~~ 226 (258)
|..+|..+|+.|.+. |+++-...-+..|.+.|+.-|..+|+.||+.+=+.. +.+-|.++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 777899999998765 789999999999999999999999999999976532 34669999
Q ss_pred HHHhHhCCCCCCCCHHHHHHHHHHHHHcC
Q 047392 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255 (258)
Q Consensus 227 f~~M~~~~~~~~pd~~ty~~li~~~~~~g 255 (258)
+++|...|+- ||..|+..++..+.+.+
T Consensus 126 L~qME~~gV~--Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVM--PDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCC--CcHHHHHHHHHHhcccc
Confidence 9999999976 99999999999998765
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.01 E-value=5.2e-06 Score=77.09 Aligned_cols=91 Identities=13% Similarity=0.125 Sum_probs=79.3
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 117 EFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 117 ~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
.++..|+ ..|+.|+.+||.++|.-||..|+++.|- +|.-|+-+..+. +...|+.++.+....++.+.+.
T Consensus 11 nfla~~e-~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv--~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 11 NFLALHE-ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPV--REGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred hHHHHHH-HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccc--cchhHHHHHhcccccccccCCC-------
Confidence 4556666 5699999999999999999999999988 888888877666 7778999999999999988887
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047392 197 QFRCRPDVYAYNVVINALCRVGNFNK 222 (258)
Q Consensus 197 ~~g~~p~~~ty~~li~~~~~~g~~~~ 222 (258)
.|..-||+.|..+|.++||+.-
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHH
Confidence 6899999999999999999776
No 33
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.91 E-value=0.00014 Score=64.18 Aligned_cols=104 Identities=9% Similarity=-0.033 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFF-HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~-~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
++++..+....+... ...--..|..++|+.|.+.|..+++.+++.+=...|+-| |.+|||.||+.+.+.|++..|.+
T Consensus 82 ~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~--D~~s~n~Lmd~fl~~~~~~~A~~ 159 (429)
T PF10037_consen 82 LDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFP--DNFSFNLLMDHFLKKGNYKSAAK 159 (429)
T ss_pred HHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCC--ChhhHHHHHHHHhhcccHHHHHH
Confidence 667777777766432 121223345699999999999999999999999999988 99999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRV 217 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~ 217 (258)
|..+|...+...+..|+.--+.+|.+.
T Consensus 160 V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 160 VATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999888888999999888888887
No 34
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.90 E-value=0.00087 Score=49.50 Aligned_cols=109 Identities=10% Similarity=-0.012 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~ 212 (258)
.....+...+.+.|+.++|.+.|+.....+ +. +...|..+-.+|.+.|++++|...+++..+.+ +.+...|..+-.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PY--NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 445566777889999999999999998864 22 55678899999999999999999999987754 446777777788
Q ss_pred HHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 213 ~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
.+...|+.++|...|++..+.. |+...+.-+..
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~ 126 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEIC----GENPEYSELKE 126 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhc----cccchHHHHHH
Confidence 8999999999999999998854 77766554443
No 35
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.90 E-value=0.0014 Score=61.37 Aligned_cols=137 Identities=4% Similarity=-0.129 Sum_probs=92.6
Q ss_pred cCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
...++|++.|++..+. .|+ ...|..+...+...|++++|...|++..+.. | -+..+|..+-..|...|++++|
T Consensus 345 g~~~eA~~~~~kal~l---~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p-~~~~~~~~lg~~~~~~g~~~~A 418 (615)
T TIGR00990 345 GKHLEALADLSKSIEL---DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--S-EDPDIYYHRAQLHFIKGEFAQA 418 (615)
T ss_pred CCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcCCHHHH
Confidence 3466777777776532 244 4466677777777888888888888776653 1 1345677777788888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~ 257 (258)
.+.|++..+.. +.+...|..+-..+.+.|+.++|+..|++..... |+ ...|+.+-..+...|++
T Consensus 419 ~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~----P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 419 GKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF----PEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred HHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHccCH
Confidence 88888776642 2245556666677777888888888888777632 43 45666666666666654
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=97.86 E-value=0.0017 Score=60.09 Aligned_cols=94 Identities=9% Similarity=0.010 Sum_probs=39.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVYAYNVVIN 212 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~li~ 212 (258)
.|..+-..+...|+.++|...+++..+.. |. +...+..+...+...|++++|.+.+++..+.. .| +...+..+-.
T Consensus 374 a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~ 449 (553)
T PRK12370 374 IKYYYGWNLFMAGQLEEALQTINECLKLD--PT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVM 449 (553)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHH
Confidence 34444444445555555555555544432 11 11112222223334455555555555543321 12 2222333344
Q ss_pred HHHHcCCHHHHHHHHHHhH
Q 047392 213 ALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 213 ~~~~~g~~~~a~~~f~~M~ 231 (258)
.+...|+.++|...+.++.
T Consensus 450 ~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 450 FLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHhCCCHHHHHHHHHHhh
Confidence 4445555555555555543
No 37
>PRK12370 invasion protein regulator; Provisional
Probab=97.86 E-value=0.0014 Score=60.60 Aligned_cols=136 Identities=13% Similarity=-0.001 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|.+.+++..+. -+-+...+..+-..+...|++++|...|++..+.+ |. +...|..+-..|...|+.++|...
T Consensus 320 ~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~-~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 320 MIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PI-SADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 67999999988742 12356677777778889999999999999998874 21 345688888899999999999999
Q ss_pred HHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH-HHHHHHHHHHHcCCC
Q 047392 192 FYRMKQFRCRPDVY-AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY-TYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~g~~p~~~-ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~-ty~~li~~~~~~g~~ 257 (258)
+++..+.. |+.. .+..+...+...|+.++|...+++.....- |+.. .+..+-..+...|+.
T Consensus 395 ~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~---p~~~~~~~~la~~l~~~G~~ 457 (553)
T PRK12370 395 INECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHL---QDNPILLSMQVMFLSLKGKH 457 (553)
T ss_pred HHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc---ccCHHHHHHHHHHHHhCCCH
Confidence 99998753 5432 333445557778999999999999876531 4433 455566667777764
No 38
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.86 E-value=0.0019 Score=60.86 Aligned_cols=136 Identities=10% Similarity=0.008 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|++.|++.... -+.+...+..+...+...|+.++|...++.+.... |.... .+..+ ..+...|++++|..+
T Consensus 126 ~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~-a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 126 YATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGD-MIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHH-HHHHH-HHHHHcCCHHHHHHH
Confidence 45666666666531 12234455566666666666666666666655442 11111 22222 235556666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
++.+....-.++...+..+...+.+.|+.++|...|++.....- -+...+..+-..|.+.|+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p---~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL---DGAALRRSLGLAYYQSGR 261 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCC
Confidence 66655432222333344444555566666666666666655331 223344445555555554
No 39
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.85 E-value=0.0015 Score=61.67 Aligned_cols=137 Identities=7% Similarity=-0.075 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
..++|.+.|+++... -+.+...+..+-..+.+.|+.++|.+.+++..+.. | -+...+..+...+...|+.++|..
T Consensus 91 ~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P-~~~~a~~~la~~l~~~g~~~eA~~ 165 (656)
T PRK15174 91 QPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--S-GNSQIFALHLRTLVLMDKELQAIS 165 (656)
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CcHHHHHHHHHHHHHCCChHHHHH
Confidence 366999999998743 22345567778888999999999999999998752 2 145578899999999999999999
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 191 TFYRMKQFRCRPDV-YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 191 l~~~M~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.++.+.... |+. ..+.. +..+.+.|++++|..+++.+....-. ++...+..+...+.+.|+.
T Consensus 166 ~~~~~~~~~--P~~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~--~~~~~~~~l~~~l~~~g~~ 228 (656)
T PRK15174 166 LARTQAQEV--PPRGDMIAT-CLSFLNKSRLPEDHDLARALLPFFAL--ERQESAGLAVDTLCAVGKY 228 (656)
T ss_pred HHHHHHHhC--CCCHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCC--cchhHHHHHHHHHHHCCCH
Confidence 999886543 333 33333 34588999999999999998776422 4455555556677777763
No 40
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.81 E-value=0.0021 Score=60.12 Aligned_cols=139 Identities=13% Similarity=0.005 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 111 GINKATEFYHWVERFFHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
..++|++.|+...+.....| +...|+.+-..+...|++++|...|++..+.. |. +...|..+-..+...|++++|.
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~-~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PR-VTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-cHHHHHHHHHHHHHCCCHHHHH
Confidence 46789999998875433334 34567778888889999999999999988753 31 3457888899999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCC
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~ 257 (258)
..|++..+.. +-+...|..+-..+...|++++|...|++..... |+ ...|..+-..+.+.|+.
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~----P~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD----PDFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----ccCHHHHHHHHHHHHHCCCH
Confidence 9999987753 3457888889999999999999999999998754 54 55666666777777764
No 41
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.001 Score=44.41 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=77.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~ 214 (258)
|..+...+...|++++|...+++..+.. +. +...+..+..++...|++++|.+.|++....+ +.+..++..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PD--NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-Cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence 4556677788999999999999987763 12 33578888999999999999999999987754 33446788888999
Q ss_pred HHcCCHHHHHHHHHHhHhC
Q 047392 215 CRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 215 ~~~g~~~~a~~~f~~M~~~ 233 (258)
...|+.++|...|++....
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 9999999999999988764
No 42
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.74 E-value=0.0047 Score=46.53 Aligned_cols=103 Identities=7% Similarity=-0.154 Sum_probs=85.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~ 214 (258)
+..+-..+.+.|++++|.+.|+...... | .+...|..+-.++.+.|++++|...|++..+.. +-+...+..+-.++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ--P-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--C-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 4456777889999999999999988764 2 266689999999999999999999999999753 45778888888999
Q ss_pred HHcCCHHHHHHHHHHhHhCCCCCCCCHHHHH
Q 047392 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245 (258)
Q Consensus 215 ~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~ 245 (258)
.+.|+.++|...|++-.... |+-.-|.
T Consensus 103 ~~~g~~~eAi~~~~~Al~~~----p~~~~~~ 129 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKMS----YADASWS 129 (144)
T ss_pred HHcCCHHHHHHHHHHHHHhC----CCChHHH
Confidence 99999999999999998744 7655444
No 43
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.67 E-value=0.0024 Score=45.64 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=78.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR--CRPDVYAYNVVI 211 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g--~~p~~~ty~~li 211 (258)
++-.+...+.+.|+.++|.+.|+++.+..-........+..+..++.+.|++++|...|++..... .......+..+-
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 455677778889999999999999987632111123356678899999999999999999987632 122245677777
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCC
Q 047392 212 NALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
..+.+.|+.++|...+++.....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 88889999999999999999865
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.66 E-value=0.00023 Score=59.74 Aligned_cols=136 Identities=15% Similarity=0.140 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+++|.++++...++ .++...+..++..+.+.++.+++.+++++.... .....+...|..+-..+.+.|+.++|++.
T Consensus 93 ~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 93 PEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45778877665433 256677888888999999999999999998754 22234777888899999999999999999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 192 FYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 192 ~~~M~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
+++..+. .|+ ....+.++..+...|+.+++.++++...... + .|...+..+-.+|.+.|+
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~--~~~~~~~~la~~~~~lg~ 229 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-P--DDPDLWDALAAAYLQLGR 229 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--H--TSCCHCHHHHHHHHHHT-
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-c--CHHHHHHHHHHHhccccc
Confidence 9998874 364 7778889999999999999999988887653 2 445567777777777665
No 45
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.61 E-value=0.011 Score=47.06 Aligned_cols=130 Identities=11% Similarity=0.030 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH-HHhcCC--hHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV-LGEEGL--VNEA 188 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~-~~~~g~--~~~a 188 (258)
.++++..++..... -+.|...|..|-..|...|++++|...|++..+.. | -+...+..+-.+ |...|+ .++|
T Consensus 55 ~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 55 PEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--G-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 56777777776532 34678889999999999999999999999988764 2 155577777776 467777 5999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHH
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~ 251 (258)
.+++++..+.. +-+...+..+-..+.+.|++++|...|+++.+.. .|+..-+..+ .+-
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~---~~~~~r~~~i-~~i 187 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN---SPRVNRTQLV-ESI 187 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCccHHHHH-HHH
Confidence 99999998864 2366778888889999999999999999998864 2666555444 553
No 46
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.59 E-value=0.0017 Score=56.97 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=74.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047392 137 EMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216 (258)
Q Consensus 137 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~ 216 (258)
+|+..+...++++.|..+|+++.+.. | ++ ...|...+...++-.+|.+++++.... .+-|....+.-...|.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--P--EV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--C--cH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 34555566677778888888877663 3 43 445667777777777777777777643 22355555555566777
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCCCHH-HHHHHHHHHHHcCCCC
Q 047392 217 VGNFNKARFLLEQMELPGFRCPPDVY-TYTILISSYCKYGMQT 258 (258)
Q Consensus 217 ~g~~~~a~~~f~~M~~~~~~~~pd~~-ty~~li~~~~~~g~~~ 258 (258)
.++.+.|..+.+++.... |+.. +|..|..+|.+.|++|
T Consensus 247 k~~~~lAL~iAk~av~ls----P~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS----PSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred cCCHHHHHHHHHHHHHhC----chhHHHHHHHHHHHHhcCCHH
Confidence 777888888888877643 6555 7777888887777653
No 47
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.59 E-value=0.013 Score=49.81 Aligned_cols=81 Identities=10% Similarity=-0.031 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|...|++..+. -+.+...|+.+-..+...|++++|.+.|+...+.. |. +..+|..+-.++...|++++|.+.
T Consensus 80 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~-~~~a~~~lg~~l~~~g~~~eA~~~ 154 (296)
T PRK11189 80 RALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PT-YNYAYLNRGIALYYGGRYELAQDD 154 (296)
T ss_pred HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555555444421 11234445555555555555555555555554432 11 223444444455555555555555
Q ss_pred HHHHHh
Q 047392 192 FYRMKQ 197 (258)
Q Consensus 192 ~~~M~~ 197 (258)
|++-.+
T Consensus 155 ~~~al~ 160 (296)
T PRK11189 155 LLAFYQ 160 (296)
T ss_pred HHHHHH
Confidence 555443
No 48
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.55 E-value=0.0028 Score=53.54 Aligned_cols=129 Identities=17% Similarity=0.065 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh----cCChHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE----EGLVNE 187 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~----~g~~~~ 187 (258)
+++|+++.+.- .+.-.....|..|.+.++++.|.+.++.|.+.+ . |. +-.-|..++.. .+.+.+
T Consensus 118 ~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--e--D~-~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 118 YEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--E--DS-ILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--C--CH-HHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C--cH-HHHHHHHHHHHHHhCchhHHH
Confidence 45666665321 355666778888999999999999999998753 2 43 44445554433 346899
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
|..+|+|+.+. +.+++.+.|.+.-+....|++++|.+++++.....- -|..|..-+|-.....|+
T Consensus 186 A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~---~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 186 AFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP---NDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp HHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C---CHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHhCC
Confidence 99999998654 567888889999999999999999999988766441 344455556655555554
No 49
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.52 E-value=0.0072 Score=59.31 Aligned_cols=113 Identities=14% Similarity=-0.022 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|.+.|+++... .|+...+..+...+.+.|+.++|.+.+++..+.. |. +...+..+.....+.|++++|...
T Consensus 525 ~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~-~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 525 YATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LG-DNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred HHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--Cc-cHHHHHHHHHHHHhCCCHHHHHHH
Confidence 45566666555421 2333334444445555566665555555554432 10 111111222222233555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
+++..+. .|+...|..+-..+.+.|+.++|...|++...
T Consensus 599 ~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~ 637 (987)
T PRK09782 599 LTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE 637 (987)
T ss_pred HHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555442 24445555555555555555555555555554
No 50
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.47 E-value=0.012 Score=57.72 Aligned_cols=136 Identities=10% Similarity=-0.020 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
+.++|.+.|++.... . +.+...+..+...+.+.|++++|...+++..+.. | +...|..+-..+.+.|+.++|++
T Consensus 557 d~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P--~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 557 NGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--P--SANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred CHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--C--CHHHHHHHHHHHHHCCCHHHHHH
Confidence 466777777776632 1 2222223233334445588888888887776542 3 45567777777888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~ 257 (258)
.|++..+.. +-+...++.+-..+...|+.++|...|++..... |+ ...+..+-.++.+.|+.
T Consensus 631 ~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~----P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 631 DLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL----PDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCH
Confidence 888777642 2234455555567777888888888888777643 43 34566666666666654
No 51
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.46 E-value=0.015 Score=45.10 Aligned_cols=118 Identities=13% Similarity=0.073 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
...|..+-..+.+.|++++|...|++..+.+..+.-....+..+-..|.+.|++++|.+.+++..+.. +-+...+..+-
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44567777888899999999999999887543221124578899999999999999999999988742 22455566666
Q ss_pred HHHHHcCC--------------HHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 212 NALCRVGN--------------FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 212 ~~~~~~g~--------------~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
..+...|+ +++|.+++++....+ |+- |..++.-+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~----p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA----PNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC----chh--HHHHHHHHHhcCc
Confidence 66767666 466777777777633 553 7777777666654
No 52
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.44 E-value=0.0053 Score=45.10 Aligned_cols=89 Identities=9% Similarity=0.101 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHc-------------CCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRR-------------GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-------------g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
|..++..+|.++++.|+++....+++..-.- +-+..|+..+-.+++.+|+..|++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567889999999999999888888654211 122246788888888888888888888888888754
Q ss_pred -CCCCCCHHHHHHHHHHHHHcCC
Q 047392 198 -FRCRPDVYAYNVVINALCRVGN 219 (258)
Q Consensus 198 -~g~~p~~~ty~~li~~~~~~g~ 219 (258)
.+++.+..+|..|++-+....+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 6788888888888887765544
No 53
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.39 E-value=0.0057 Score=46.04 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
...+.+.++.+...++-.+ .....=.+-..+...|++++|...|++..+....+.......-.|-..+...|++++|+.
T Consensus 27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~ 106 (145)
T PF09976_consen 27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALA 106 (145)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3466777888875432111 011222234668889999999999999998763332223345557788899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~ 229 (258)
+++......+ ....+...=+.+.+.|+.++|...|++
T Consensus 107 ~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 107 TLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9977544332 334455566778899999999999875
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.32 E-value=0.013 Score=51.94 Aligned_cols=131 Identities=10% Similarity=0.064 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 047392 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193 (258)
Q Consensus 114 ~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~ 193 (258)
...++++...+. .+.+......+...+.+.|+.++|.+++++..+. .+ |. --.++.+....++.+++.+..+
T Consensus 247 ~l~~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~--~~--~l~~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 247 GLKRWWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QY--DE--RLVLLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred HHHHHHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC--CH--HHHHHHhhccCCChHHHHHHHH
Confidence 444444554432 3457778888999999999999999999998774 23 32 2335666667799999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 194 ~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
...+.. +-|...+.++=..|.+.|++++|.+.|+...... |+..+|-.|-..+.+.|+.
T Consensus 319 ~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~----P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 319 QQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR----PDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHcCCH
Confidence 988642 2344556677788889999999999999999854 9999999999999988874
No 55
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.28 E-value=0.02 Score=50.66 Aligned_cols=89 Identities=8% Similarity=0.010 Sum_probs=44.1
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047392 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222 (258)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~ 222 (258)
.+.|+.+.|.+.+.++.+.. |+......-.....+...|+.++|.+.+++..+.. +-+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 45555666666665554431 21111111122344555566666666665555433 2234445555555556666666
Q ss_pred HHHHHHHhHhCC
Q 047392 223 ARFLLEQMELPG 234 (258)
Q Consensus 223 a~~~f~~M~~~~ 234 (258)
|.+++.++.+.+
T Consensus 206 a~~~l~~l~k~~ 217 (398)
T PRK10747 206 LLDILPSMAKAH 217 (398)
T ss_pred HHHHHHHHHHcC
Confidence 665555555544
No 56
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.27 E-value=0.036 Score=53.41 Aligned_cols=132 Identities=10% Similarity=0.034 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 047392 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~ 192 (258)
++|++++.+.... -+.+...+..+-..+.+.|++++|.+++++..+.. +. +...+..+...+...|+.++|...+
T Consensus 32 ~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~--~~~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 32 AEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQ--NDDYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred HHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC--CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4667777776531 12334457777777777788888888877766552 12 3334667777777778888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH-HHHHHHHHHHHcC
Q 047392 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY-TYTILISSYCKYG 255 (258)
Q Consensus 193 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~-ty~~li~~~~~~g 255 (258)
++..+. .+.+.. +..+-..+...|+.++|...+++..... |+.. .+..+...+.+.|
T Consensus 107 ~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~----P~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 107 KQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA----PQTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCC
Confidence 777654 123344 6666667777788888888887777643 4433 3344444444443
No 57
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.26 E-value=0.041 Score=44.67 Aligned_cols=142 Identities=13% Similarity=0.104 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCH-HHHHHHHHHHHhc-------
Q 047392 112 INKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTT-STVTCLIKVLGEE------- 182 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~t~~~li~~~~~~------- 182 (258)
.++|...|++......-.|. ..++..+-.++.+.|++++|...++++.+..-. .+.. .++..+-.++...
T Consensus 49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~g~~~~~~~~~~~~~ 127 (235)
T TIGR03302 49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYAYYLRGLSNYNQIDRVDRD 127 (235)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHHHHHHHHHHHHhcccccCC
Confidence 56889999887643211111 235666778888999999999999999876321 1111 1344444444443
Q ss_pred -CChHHHHHHHHHHHhCCCCCCHH-HHH-----------------HHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC-CHH
Q 047392 183 -GLVNEALATFYRMKQFRCRPDVY-AYN-----------------VVINALCRVGNFNKARFLLEQMELPGFRCPP-DVY 242 (258)
Q Consensus 183 -g~~~~a~~l~~~M~~~g~~p~~~-ty~-----------------~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p-d~~ 242 (258)
|+.++|.+.|++..... |+.. .+. .+-..+.+.|+.++|...|++.....-. .| ...
T Consensus 128 ~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 204 (235)
T TIGR03302 128 QTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPD-TPATEE 204 (235)
T ss_pred HHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHH
Confidence 77899999999987642 4432 111 2345577889999999999998875310 12 245
Q ss_pred HHHHHHHHHHHcCCC
Q 047392 243 TYTILISSYCKYGMQ 257 (258)
Q Consensus 243 ty~~li~~~~~~g~~ 257 (258)
.+..+..++.+.|+.
T Consensus 205 a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 205 ALARLVEAYLKLGLK 219 (235)
T ss_pred HHHHHHHHHHHcCCH
Confidence 788888888888875
No 58
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.26 E-value=0.011 Score=49.71 Aligned_cols=127 Identities=12% Similarity=0.079 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
++.|.++|++..+...+..++....++|.-++ .++.+.|..+|+...+. +.- +...|..-|+.+.+.++.+.|..+
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~-f~~--~~~~~~~Y~~~l~~~~d~~~aR~l 92 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKK-FPS--DPDFWLEYLDFLIKLNDINNARAL 92 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHH-HTT---HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCC--CHHHHHHHHHHHHHhCcHHHHHHH
Confidence 67999999999855445566666666664443 56677799999998877 555 666789999999999999999999
Q ss_pred HHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHH
Q 047392 192 FYRMKQFRCRPDV----YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248 (258)
Q Consensus 192 ~~~M~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li 248 (258)
|++.... .|.. ..|...|.-=.+.|+++.+..+.+++.+. -|+......++
T Consensus 93 fer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~----~~~~~~~~~f~ 147 (280)
T PF05843_consen 93 FERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL----FPEDNSLELFS 147 (280)
T ss_dssp HHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH----TTTS-HHHHHH
T ss_pred HHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----hhhhhHHHHHH
Confidence 9998865 2333 48999999999999999999999999873 25544444443
No 59
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.25 E-value=0.025 Score=54.40 Aligned_cols=141 Identities=9% Similarity=-0.028 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE-LVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.++|++.|+.+.....-.|+-.-. .+-..+...|++++|...|++..+..... ......+..|..++...|++++|.+
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~a~~-~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPWAQR-WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHHHHH-HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 456666666665331111221111 13445666666666666666655432100 0012234455556666666666666
Q ss_pred HHHHHHhCC-----------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 191 TFYRMKQFR-----------CRPD---VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 191 l~~~M~~~g-----------~~p~---~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
+++++.... -.|+ ...+..+...+...|+.++|+++++++.... + -+...+..+...+.+.|+
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P--~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-P--GNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C--CCHHHHHHHHHHHHhcCC
Confidence 666665431 0112 1233445555666666666666666665532 1 223344444444444443
No 60
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.24 E-value=0.03 Score=43.10 Aligned_cols=98 Identities=12% Similarity=0.004 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 210 (258)
....|..+...+...|++++|...|++.......+.....+|..+-..|.+.|+.++|++.++...... +....+++.+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 355667777788889999999999999876532222233578889999999999999999999987642 2334556666
Q ss_pred HHHHH-------HcCCHHHHHHHHHH
Q 047392 211 INALC-------RVGNFNKARFLLEQ 229 (258)
Q Consensus 211 i~~~~-------~~g~~~~a~~~f~~ 229 (258)
-..+. +.|+++.|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 66666 77887755555543
No 61
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.22 E-value=0.013 Score=51.10 Aligned_cols=103 Identities=15% Similarity=0.032 Sum_probs=69.3
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047392 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (258)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 219 (258)
..+...|++++|.+.|++..+..- -+...|..+-.+|.+.|++++|+..+++..+.. +.+...|..+-.+|.+.|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P---~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP---NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 344567778888888887776531 145567777777788888888888888776642 2355566667677777888
Q ss_pred HHHHHHHHHHhHhCCCCCCCCHHHHHHHHHH
Q 047392 220 FNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (258)
Q Consensus 220 ~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~ 250 (258)
+++|...|++..... |+-.....++..
T Consensus 86 ~~eA~~~~~~al~l~----P~~~~~~~~l~~ 112 (356)
T PLN03088 86 YQTAKAALEKGASLA----PGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHHhC----CCCHHHHHHHHH
Confidence 888888888777643 555554444433
No 62
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.20 E-value=0.014 Score=51.32 Aligned_cols=111 Identities=13% Similarity=0.114 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.+.|+++|+++.+.. |+.. -.|...+...++-.+|.+++++..+.. .-+......-...|.+.++.+.|+++
T Consensus 185 ~~~ai~lle~L~~~~---pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~---p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 185 YDEAIELLEKLRERD---PEVA--VLLARVYLLMNEEVEAIRLLNEALKEN---PQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred HHHHHHHHHHHHhcC---CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 679999999998543 6643 447777777788888999999888653 22555666677778999999999999
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 192 FYRMKQFRCRPDV-YAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 192 ~~~M~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
.+++... .|+. .+|..|..+|.+.|+++.|.-..+-|..
T Consensus 257 Ak~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 257 AKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999874 4655 5999999999999999999999998864
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.20 E-value=0.016 Score=48.85 Aligned_cols=93 Identities=9% Similarity=0.103 Sum_probs=57.1
Q ss_pred CccccccCHHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh
Q 047392 104 NPQKVTLGINKATEFYHWVERFFHFFHNEV--TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE 181 (258)
Q Consensus 104 ~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~--~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~ 181 (258)
+.|.....+|.|+++.+-+.+..+++-+.. ..-.|-.-|.++|-++.|+.+|..+.+.|.- -...--.|+.-|-.
T Consensus 77 nLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef---a~~AlqqLl~IYQ~ 153 (389)
T COG2956 77 NLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF---AEGALQQLLNIYQA 153 (389)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh---hHHHHHHHHHHHHH
Confidence 344444556688888777765533322221 2223445577778888888888887775421 22245667777777
Q ss_pred cCChHHHHHHHHHHHhCC
Q 047392 182 EGLVNEALATFYRMKQFR 199 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g 199 (258)
..+|++|+++-++..+.|
T Consensus 154 treW~KAId~A~~L~k~~ 171 (389)
T COG2956 154 TREWEKAIDVAERLVKLG 171 (389)
T ss_pred hhHHHHHHHHHHHHHHcC
Confidence 777777777777766543
No 64
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.19 E-value=0.026 Score=54.47 Aligned_cols=106 Identities=8% Similarity=0.012 Sum_probs=50.8
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 047392 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220 (258)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~ 220 (258)
.+...|++++|.++|+++.+... - +...+..++..|...++.++|++.+++.... .|+...|-.++..+...++.
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP-~--n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDP-T--NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC-C--CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 44444566666666666555421 1 2233445555555556666666666555543 24444443332222223344
Q ss_pred HHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcC
Q 047392 221 NKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYG 255 (258)
Q Consensus 221 ~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g 255 (258)
.+|.+.++++.... |+ ...+.-++.++.+.|
T Consensus 186 ~~AL~~~ekll~~~----P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 186 YDALQASSEAVRLA----PTSEEVLKNHLEILQRNR 217 (822)
T ss_pred HHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcC
Confidence 34666666665543 42 333444444444444
No 65
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.17 E-value=0.0024 Score=41.06 Aligned_cols=63 Identities=22% Similarity=0.296 Sum_probs=35.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHH
Q 047392 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li 248 (258)
+.|++++|.++|+++.+.. +-|...+-.+..+|.+.|++++|.++++++.... ||-..|..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~----~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD----PDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG----TTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----cCHHHHHHHH
Confidence 4566666666666665431 1245555556666666666666666666666543 5544444443
No 66
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.16 E-value=0.0061 Score=51.32 Aligned_cols=119 Identities=14% Similarity=0.098 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~ 212 (258)
.+|-.+++..-|.+.++.|..+|.+-.+.+ ....++....++|. |...++.+.|.+||+...+. +.-+..-|..-|+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 578889999999999999999999998653 22224444444443 33457788899999998764 4567888999999
Q ss_pred HHHHcCCHHHHHHHHHHhHhCCCCCCCCH---HHHHHHHHHHHHcCCC
Q 047392 213 ALCRVGNFNKARFLLEQMELPGFRCPPDV---YTYTILISSYCKYGMQ 257 (258)
Q Consensus 213 ~~~~~g~~~~a~~~f~~M~~~~~~~~pd~---~ty~~li~~~~~~g~~ 257 (258)
-+.+.|+.+.|..+|++.... +. ++. ..|...|+-=.+.|++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~--~~~~~~~iw~~~i~fE~~~Gdl 123 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LP--KEKQSKKIWKKFIEFESKYGDL 123 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SS--CHHHCHHHHHHHHHHHHHHS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cC--chhHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999976 22 333 3788888766666653
No 67
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.14 E-value=0.029 Score=56.58 Aligned_cols=134 Identities=11% Similarity=0.003 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|.++++. .+.+...+..+-..+.+.|+.++|.+.|++..+.. |. +...+..+...|...|+.++|++.
T Consensus 589 ~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~-~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 589 EAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PG-NADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5567777652 23455566778888899999999999999998863 21 566789999999999999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC---CHHHHHHHHHHHHHcCC
Q 047392 192 FYRMKQFRCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP---DVYTYTILISSYCKYGM 256 (258)
Q Consensus 192 ~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p---d~~ty~~li~~~~~~g~ 256 (258)
++...+. .| +..++..+-..+...|+.++|.++|++.....-.-.| +...+..+-..+-+.|+
T Consensus 660 l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~ 726 (1157)
T PRK11447 660 LAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQ 726 (1157)
T ss_pred HHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCC
Confidence 9987653 34 4455666777888999999999999998865321012 22345444555555554
No 68
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.12 E-value=0.0097 Score=43.73 Aligned_cols=84 Identities=11% Similarity=0.055 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHH---------------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMK---------------QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~---------------~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
|..++.++|.++++.|+++....+.+..= .....||..+..+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45689999999999999999999997741 123578999999999999999999999999999876
Q ss_pred C-CCCCCCCHHHHHHHHHHHHH
Q 047392 233 P-GFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 233 ~-~~~~~pd~~ty~~li~~~~~ 253 (258)
. +++ -+..+|..|++-+..
T Consensus 81 ~Y~I~--i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 81 KYPIP--IPKEFWRRLLEWAYV 100 (126)
T ss_pred HcCCC--CCHHHHHHHHHHHHH
Confidence 4 554 678899999976543
No 69
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.12 E-value=0.027 Score=49.64 Aligned_cols=121 Identities=15% Similarity=0.231 Sum_probs=82.6
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 047392 128 FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207 (258)
Q Consensus 128 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty 207 (258)
++-|.....-|-.-|-+.|+-.+|...+-+--+. +++ |..|..=|-.-|....-+++|+..|++..- ++|+..-|
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~--nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kw 662 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPC--NIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKW 662 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCc--chHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHH
Confidence 3444555666666666777777776665544333 455 555666666667777778888888877543 57899999
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 208 NVVINALC-RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 208 ~~li~~~~-~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
-.||..|. +.|++.+|.++|.+...+ + .-|..+..-|+..+.-.|.
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrk-f--pedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRK-F--PEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHh-C--ccchHHHHHHHHHhccccc
Confidence 88887666 468899999999888764 3 3677777777776665553
No 70
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.12 E-value=0.0088 Score=50.58 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFA----RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
++.|.+.++.|.+ ...|....+ |..++. -..++.+|..+|+++.+. +++ +..+.|.+.-++...|++++
T Consensus 147 ~dlA~k~l~~~~~---~~eD~~l~q-La~awv~l~~g~e~~~~A~y~f~El~~~-~~~--t~~~lng~A~~~l~~~~~~e 219 (290)
T PF04733_consen 147 PDLAEKELKNMQQ---IDEDSILTQ-LAEAWVNLATGGEKYQDAFYIFEELSDK-FGS--TPKLLNGLAVCHLQLGHYEE 219 (290)
T ss_dssp HHHHHHHHHHHHC---CSCCHHHHH-HHHHHHHHHHTTTCCCHHHHHHHHHHCC-S----SHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHh---cCCcHHHHH-HHHHHHHHHhCchhHHHHHHHHHHHHhc-cCC--CHHHHHHHHHHHHHhCCHHH
Confidence 6799999999984 335655443 444332 334699999999998776 555 78899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHhHhCC
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNF-NKARFLLEQMELPG 234 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~-~~a~~~f~~M~~~~ 234 (258)
|.+++.+..... +-|..|...+|-+....|+. +.+.+++++++...
T Consensus 220 Ae~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 220 AEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 999999976543 34666777788888888887 77889999998754
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.11 E-value=0.0084 Score=54.30 Aligned_cols=156 Identities=18% Similarity=0.115 Sum_probs=106.0
Q ss_pred ccCCCCccccccCHHHHHHHHHHHHhhCCC-CCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHc---CCCC-C-cCHHH
Q 047392 99 PAAYRNPQKVTLGINKATEFYHWVERFFHF-FHNEV-TCKEMGIVFARGNNVKGLWDFLKEMSRR---GNGE-L-VTTST 171 (258)
Q Consensus 99 ~~~~~~~~~~~~~~~~a~~~f~~m~~~~~~-~p~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~-~-~~~~t 171 (258)
+...++...+....+.|+++++... +. .|.+. -++.+...|+..+++++|..++..-.+. -+++ . --..+
T Consensus 293 y~~~GKf~EA~~~~e~Al~I~~~~~---~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~ 369 (508)
T KOG1840|consen 293 YYKQGKFAEAEEYCERALEIYEKLL---GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKI 369 (508)
T ss_pred HhccCChHHHHHHHHHHHHHHHHhh---ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 4444444444444666777766622 22 23333 4666777888899999998888754332 1111 0 12458
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC-----C-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhH----hCCCCCCCC
Q 047392 172 VTCLIKVLGEEGLVNEALATFYRMKQF-----R-CRP-DVYAYNVVINALCRVGNFNKARFLLEQME----LPGFRCPPD 240 (258)
Q Consensus 172 ~~~li~~~~~~g~~~~a~~l~~~M~~~-----g-~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~----~~~~~~~pd 240 (258)
|+.|-..|-+.|++++|.++|++.... | ..+ ....+|-|=..|.+.++.++|.++|.+-+ ..|. .-||
T Consensus 370 ~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~-~~~~ 448 (508)
T KOG1840|consen 370 YANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP-DHPD 448 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC-CCCc
Confidence 999999999999999999999997541 1 122 24567788888999999999999997754 3343 2345
Q ss_pred HH-HHHHHHHHHHHcCCCC
Q 047392 241 VY-TYTILISSYCKYGMQT 258 (258)
Q Consensus 241 ~~-ty~~li~~~~~~g~~~ 258 (258)
+. ||.-|...|.+.|++|
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e 467 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYE 467 (508)
T ss_pred hHHHHHHHHHHHHHcccHH
Confidence 44 6999999999999865
No 72
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.09 E-value=0.0018 Score=43.84 Aligned_cols=81 Identities=14% Similarity=0.197 Sum_probs=50.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHH
Q 047392 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV-YAYNVVINALCRVGNFNKA 223 (258)
Q Consensus 145 ~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~-~ty~~li~~~~~~g~~~~a 223 (258)
.|+++.|..+++++.+.... +++...+-.+-.+|.+.|++++|.++++. .+. .++. ...-.+-.+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46778888888888776421 11333444478888888888888888877 221 2333 2222334566678888888
Q ss_pred HHHHHH
Q 047392 224 RFLLEQ 229 (258)
Q Consensus 224 ~~~f~~ 229 (258)
.++|++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888765
No 73
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.07 E-value=0.0061 Score=50.46 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=78.7
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHc-----cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC------
Q 047392 116 TEFYHWVERFFHFFHNEVTCKEMGIVFAR-----GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL------ 184 (258)
Q Consensus 116 ~~~f~~m~~~~~~~p~~~~y~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~------ 184 (258)
.+.|.... +-+.|-.+|-+.+..+.. .+++|=...-+..|++.|+.- |..+|+.||+.+-|..-
T Consensus 54 e~~F~aa~---~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVer--Dl~vYk~LlnvfPKgkfiP~nvf 128 (406)
T KOG3941|consen 54 EKQFEAAE---PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVER--DLDVYKGLLNVFPKGKFIPQNVF 128 (406)
T ss_pred hhhhhccC---cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchh--hHHHHHHHHHhCcccccccHHHH
Confidence 44555443 334677778777777753 366777778889999999887 77899999999887753
Q ss_pred ----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047392 185 ----------VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (258)
Q Consensus 185 ----------~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 219 (258)
-+=+++++++|+.+|+-||-.+--.||++|++.+-
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 34588999999999999999999999999999875
No 74
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.05 E-value=0.07 Score=53.84 Aligned_cols=134 Identities=11% Similarity=0.005 Sum_probs=97.6
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHH------------HH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCL------------IK 177 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~l------------i~ 177 (258)
...++|++.|++.... -+-+...+..|-..+.+.|+.++|...|++..+..-.. .....|..+ -.
T Consensus 283 g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~-~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 283 GQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS-SNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-cchhHHHHHHHhhhHHHHHHHHH
Confidence 4478999999988743 22367788889999999999999999999987753211 111122222 34
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHH
Q 047392 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSY 251 (258)
Q Consensus 178 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~ 251 (258)
.+.+.|++++|.+.|++..+.. +.+...+..+-..+...|++++|++.|++..... |+ ...+..+...|
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~----p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD----PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHH
Confidence 5778999999999999998753 3356677778889999999999999999998754 44 44555554444
No 75
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.01 E-value=0.075 Score=50.37 Aligned_cols=128 Identities=15% Similarity=0.052 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.++|.++++...+ +.|| ....-.+...+.+.+++++|...+++..+.... +....+.+-.++.+.|+.++|.+
T Consensus 102 ~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~---~~~~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 102 SDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS---SAREILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred cHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHhcchHHHHH
Confidence 5688899888874 3465 445667888999999999999999999887421 44467788888999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
+|++....+ .-+..++..+=.++-+.|+.++|...|.+-.... .|...-|+-.+.
T Consensus 176 ~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~---~~~~~~~~~~~~ 230 (694)
T PRK15179 176 CFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI---GDGARKLTRRLV 230 (694)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---CcchHHHHHHHH
Confidence 999999732 2337888888899999999999999999997752 256666665554
No 76
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.00 E-value=0.049 Score=40.87 Aligned_cols=120 Identities=14% Similarity=0.072 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV--YAYNVV 210 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~--~ty~~l 210 (258)
..|..++..+. .++...+.+.++++.+..-.-.......=.+-..+...|++++|...|+......-.|+. ...-.|
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 34666666664 888999999999999874221011122223447788899999999999999987622222 233445
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 211 i~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
-..+...|++++|+..++...... .....+...=..|.+.|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~----~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA----FKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc----hHHHHHHHHHHHHHHCCCH
Confidence 677888999999999998855433 3333455555667777764
No 77
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.93 E-value=0.0054 Score=39.40 Aligned_cols=64 Identities=16% Similarity=0.204 Sum_probs=49.2
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
.+.|++++|.+.|++..+.. |. +...+-.+..+|.+.|++++|.++++++... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 46788999999999988774 21 5556778999999999999999999998875 37766665554
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.88 E-value=0.088 Score=44.65 Aligned_cols=137 Identities=12% Similarity=0.071 Sum_probs=77.8
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
....++|.+.|+...+ +.|+ ..+|..+-..+...|+.++|.+.|+...+.. | +..........+...++.++
T Consensus 111 ~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P--~~~~~~~~~~l~~~~~~~~~ 183 (296)
T PRK11189 111 AGNFDAAYEAFDSVLE---LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--P--NDPYRALWLYLAESKLDPKQ 183 (296)
T ss_pred CCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C--CCHHHHHHHHHHHccCCHHH
Confidence 4558888888888763 2243 5667777777888899999999888887653 2 22111222223345678889
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC---CCCCCC-CHHHHHHHHHHHHHcCCC
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP---GFRCPP-DVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~---~~~~~p-d~~ty~~li~~~~~~g~~ 257 (258)
|.+.|.+..... .|+...+ .+ .....|+.+.+ +.++.+... .....| ....|..+=..+.+.|+.
T Consensus 184 A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~ 252 (296)
T PRK11189 184 AKENLKQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDL 252 (296)
T ss_pred HHHHHHHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 988887654321 2332222 22 22335555544 355555532 100001 224566666677777664
No 79
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.86 E-value=0.073 Score=47.31 Aligned_cols=116 Identities=10% Similarity=0.044 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 113 NKATEFYHWVERFFHFFHNEVT-CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~~~~-y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+.|.+.+....+ ..|+... |-..-....+.|+.++|.+.+.+..+.. |..+....-.....+...|++++|.+.
T Consensus 101 ~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 101 AKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred HHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 355555554432 1233222 2222344445566666666666654432 222221222234555556666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
++++.+.+ +-+...+..+...+.+.|++++|.+++.++.+.+
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 66665543 2244455556666666666666666666666554
No 80
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.08 Score=43.58 Aligned_cols=122 Identities=19% Similarity=0.125 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh----cCChHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE----EGLVNE 187 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~----~g~~~~ 187 (258)
.++|++..+... +.-....=+..+.|..+++-|...+++|.+-. +..|.+-|-.++.+ .+.+.+
T Consensus 124 ~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id-----ed~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 124 FDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQID-----EDATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred hHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----hHHHHHHHHHHHHHHhccchhhhh
Confidence 557777765522 23334444566778888999999999998764 55678877776655 467999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
|.-+|+||.+. +.|+.-+-|.+..++...|++++|..++++...+.- -|..|..-+|-
T Consensus 192 AfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~---~dpetL~Nliv 249 (299)
T KOG3081|consen 192 AFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA---KDPETLANLIV 249 (299)
T ss_pred HHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC---CCHHHHHHHHH
Confidence 99999999762 579999999999999999999999999999987653 23444444443
No 81
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=0.032 Score=51.08 Aligned_cols=136 Identities=12% Similarity=0.118 Sum_probs=90.9
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHH---HHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCCh
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKE---MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLV 185 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~---li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~ 185 (258)
...+|.|..-|+... ..|...||+ |-..|.|.++++.|+-.|+.-.+-+ | .+.+.-..+-..+-+.|+.
T Consensus 468 ~ee~d~a~~~fr~Al-----~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P-~nsvi~~~~g~~~~~~k~~ 539 (638)
T KOG1126|consen 468 TEEFDKAMKSFRKAL-----GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--P-SNSVILCHIGRIQHQLKRK 539 (638)
T ss_pred hHHHHhHHHHHHhhh-----cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--c-cchhHHhhhhHHHHHhhhh
Confidence 333556666665443 356666776 4456788899999988888776543 3 2444555555666788999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHH-HHHHHHHHHHcCCC
Q 047392 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT-YTILISSYCKYGMQ 257 (258)
Q Consensus 186 ~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~t-y~~li~~~~~~g~~ 257 (258)
|+|++++++..... +-|+-+---....+.-.++.++|...+++++. +.|+..+ |-.+-+.|-+.|+.
T Consensus 540 d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~----~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 540 DKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKE----LVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHH----hCcchHHHHHHHHHHHHHHccc
Confidence 99999999876532 12333333345556677899999999999998 4577665 66666777776653
No 82
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.82 E-value=0.011 Score=49.10 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----------------CHHHHHHH
Q 047392 168 TTSTVTCLIKVLGEE-----GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG----------------NFNKARFL 226 (258)
Q Consensus 168 ~~~t~~~li~~~~~~-----g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g----------------~~~~a~~~ 226 (258)
|..+|-+++.-|... ++++-...-+..|++.|+..|..+|+.||+.+=+.. .-+=+..+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 444677777666544 678888888999999999999999999999876643 22348899
Q ss_pred HHHhHhCCCCCCCCHHHHHHHHHHHHHcC
Q 047392 227 LEQMELPGFRCPPDVYTYTILISSYCKYG 255 (258)
Q Consensus 227 f~~M~~~~~~~~pd~~ty~~li~~~~~~g 255 (258)
+++|...|+. ||-.+-..||.++.+-|
T Consensus 146 LeqME~hGVm--PdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 146 LEQMEWHGVM--PDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHcCCC--CchHHHHHHHHHhcccc
Confidence 9999999977 99999999999998765
No 83
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.76 E-value=0.079 Score=50.24 Aligned_cols=122 Identities=9% Similarity=0.050 Sum_probs=96.9
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-
Q 047392 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY- 205 (258)
Q Consensus 127 ~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~- 205 (258)
.+..+...+-.|-....+.|+.++|..+++...+.. |+ +......+...+.+.+++++|+...++..... |+.-
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~ 155 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAR 155 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHH
Confidence 355668888889999999999999999999998763 31 44467788899999999999999999998754 5554
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCC
Q 047392 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 206 ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~ 257 (258)
..+.+=.++.+.|+.++|..+|++....+ || ..++..+=.++-..|+.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~----p~~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQH----PEFENGYVGWAQSLTRRGAL 204 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHcCCH
Confidence 45566677788999999999999999854 55 55666666666666654
No 84
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.75 E-value=0.014 Score=43.77 Aligned_cols=70 Identities=13% Similarity=0.203 Sum_probs=39.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-----FRCRPDVYA 206 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~-----~g~~p~~~t 206 (258)
+...++..+...|+.++|.++...+.... ..|...|..+|.+|...|+..+|.++|+++.. .|+.|+..|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455555666777777777777766653 12555677777777777777777777766632 466666554
No 85
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.74 E-value=0.057 Score=52.15 Aligned_cols=119 Identities=10% Similarity=-0.032 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCH-HH----HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChH
Q 047392 112 INKATEFYHWVERFFHFFHNE-VT----CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~-~~----y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~ 186 (258)
.+.|+.-++.+....+-.|.. .- .--.+-++.+.|+..++.+.|+.|...|.+. -..+--.+.++|...++.+
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~--P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM--PDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC--CHHHHHHHHHHHHhcCCcH
Confidence 778888888877554443432 22 2245667888999999999999999988653 3457889999999999999
Q ss_pred HHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 187 EALATFYRMKQFR-----CRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 187 ~a~~l~~~M~~~g-----~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
+|..++++..... ..++......|..++...+++++|..+.+++..
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 9999999996532 244566678999999999999999999999987
No 86
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.023 Score=54.10 Aligned_cols=133 Identities=15% Similarity=0.150 Sum_probs=104.0
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
....+.|+++|.+..+ .-+.|..+=|-+--.++..|++++|.++|.+..+.... ..| +|-.+-++|..+|++..|
T Consensus 625 kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~d--v~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FED--VWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCc--eeeeHHHHHHHHHHHHHH
Confidence 3447899999998874 33456777777888899999999999999999998641 124 599999999999999999
Q ss_pred HHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHH
Q 047392 189 LATFYRMKQ-FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248 (258)
Q Consensus 189 ~~l~~~M~~-~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li 248 (258)
+++|+...+ .+-.-++...+.|-.++-++|.+.+|.+....-...... -..+-||..+
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~--~~~v~FN~a~ 758 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS--NTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc--cchHHhHHHH
Confidence 999999654 555567888899999999999999999998877764421 2334455544
No 87
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.67 E-value=0.32 Score=43.20 Aligned_cols=118 Identities=7% Similarity=-0.113 Sum_probs=82.1
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEV--TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~--~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
.+.+.|.+.+.+..+.. |+.. .--.....+...|+.++|.+.++++.+.. | -+......+...|...|++++
T Consensus 132 g~~~~A~~~l~~a~~~~---p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~--P-~~~~~l~ll~~~~~~~~d~~~ 205 (409)
T TIGR00540 132 GDEARANQHLEEAAELA---GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA--P-RHKEVLKLAEEAYIRSGAWQA 205 (409)
T ss_pred CCHHHHHHHHHHHHHhC---CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHHhhHHH
Confidence 55889999998876432 4432 33334677788999999999999999885 2 144578899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHH-HHHHHH---HHcCCHHHHHHHHHHhHhCC
Q 047392 188 ALATFYRMKQFRCRPDVYAYN-VVINAL---CRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~-~li~~~---~~~g~~~~a~~~f~~M~~~~ 234 (258)
|.+++....+.+.. +...+. .-..++ ...+..+.+.+.+.++....
T Consensus 206 a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 206 LDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 99999999998754 444342 222222 33344445555777776543
No 88
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.65 E-value=0.012 Score=37.48 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=31.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 177 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..+.+.|++++|.+.|++..+.. +-+...+..+-..+.+.|++++|..+|++...
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666666666666666543 22444455555556666666666666666654
No 89
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.64 E-value=0.024 Score=37.43 Aligned_cols=82 Identities=20% Similarity=0.173 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~ 250 (258)
++..+...+...|++++|..+|++..+.. +.+...+..+-..+...|++++|.+.|++.....- .+..++..+...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP---DNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---cchhHHHHHHHH
Confidence 35667788889999999999999987643 23446778888889999999999999999887542 344567777777
Q ss_pred HHHcCC
Q 047392 251 YCKYGM 256 (258)
Q Consensus 251 ~~~~g~ 256 (258)
+...|+
T Consensus 78 ~~~~~~ 83 (100)
T cd00189 78 YYKLGK 83 (100)
T ss_pred HHHHHh
Confidence 776665
No 90
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.62 E-value=0.035 Score=47.07 Aligned_cols=136 Identities=10% Similarity=-0.067 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+.+|.+.|+.-.++ .|-..||-.|-..|.+....+.|+.+|.+-.+. ++- |+.-..-+-..+-..++.++|.++
T Consensus 239 ~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~--~VT~l~g~ARi~eam~~~~~a~~l 312 (478)
T KOG1129|consen 239 PRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPF--DVTYLLGQARIHEAMEQQEDALQL 312 (478)
T ss_pred hhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCc--hhhhhhhhHHHHHHHHhHHHHHHH
Confidence 67888888776644 377788998999999999999999999887766 333 432234455566777899999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
+.+..+.. ..++....++-.+|.-.++.|-|+.+|.++.+.|+ -+...|+-+=-+|.-.+++
T Consensus 313 Yk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~---~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 313 YKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA---QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC---CChHHHhhHHHHHHhhcch
Confidence 99987642 45677777777888889999999999999999997 3555666554444444444
No 91
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.62 E-value=0.089 Score=48.33 Aligned_cols=121 Identities=15% Similarity=0.144 Sum_probs=93.2
Q ss_pred cCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
..+|-|+.-|++..+ +.|+ ...||-|-+++...|++.+|.+.|.+-..- ..-.+| .-+.|-..|...|.+++|
T Consensus 300 G~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~had--am~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNHAD--AMNNLGNIYREQGKIEEA 373 (966)
T ss_pred ccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHH--HHHHHHHHHHHhccchHH
Confidence 348888888887663 3455 457999999999999999999999887765 222234 578888999999999999
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH
Q 047392 189 LATFYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ 242 (258)
..+|..-.+. .|. ...+|.|-..|-+.|++++|...|++..+ ++|+..
T Consensus 374 ~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr----I~P~fA 422 (966)
T KOG4626|consen 374 TRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR----IKPTFA 422 (966)
T ss_pred HHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh----cCchHH
Confidence 9999887663 343 35578888888899999999999998886 447654
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.59 E-value=0.16 Score=43.85 Aligned_cols=98 Identities=10% Similarity=0.105 Sum_probs=74.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCH--HHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDV--YAYNVV 210 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g-~~p~~--~ty~~l 210 (258)
....+-..+...|++++|.+.+++..+.. +. +...+..+-..|...|++++|...+++..... ..|+. ..|..+
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~--~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PD--DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC--CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 34455567788999999999999998864 22 45567888889999999999999999887642 12333 345577
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 211 INALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 211 i~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
-..+...|+.++|..+|++.....
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~~ 216 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAPS 216 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccc
Confidence 788889999999999999986543
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.56 E-value=0.093 Score=39.42 Aligned_cols=91 Identities=9% Similarity=-0.053 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|.+.|++.... -+.+...|..+-..+.+.|++++|...|+...+.. | .+...+..+-.++...|+.++|..
T Consensus 39 ~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p-~~~~a~~~lg~~l~~~g~~~eAi~ 113 (144)
T PRK15359 39 DYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--A-SHPEPVYQTGVCLKMMGEPGLARE 113 (144)
T ss_pred CHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--C-CCcHHHHHHHHHHHHcCCHHHHHH
Confidence 367999999998732 23467788888899999999999999999998864 2 255679999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHH
Q 047392 191 TFYRMKQFRCRPDVYAYN 208 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~ 208 (258)
.|++..+. .|+-..|.
T Consensus 114 ~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 114 AFQTAIKM--SYADASWS 129 (144)
T ss_pred HHHHHHHh--CCCChHHH
Confidence 99998874 46655554
No 94
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.56 E-value=0.21 Score=40.86 Aligned_cols=121 Identities=17% Similarity=0.051 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 209 (258)
-|....+.+.....+.|++.+|...+.+...- -++ |..+||.+=-+|-+.|++++|..-|.+-.+.- .-+...+|.
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~--d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nN 173 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APT--DWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANN 173 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCC--ChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhh
Confidence 34445555777777788888888888777654 223 66778888888888888888887777766531 124455677
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 210 li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|-..+.-.|+.+.|+.++..-...+. -|...-.-+.-.....|++
T Consensus 174 lgms~~L~gd~~~A~~lll~a~l~~~---ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 174 LGMSLLLRGDLEDAETLLLPAYLSPA---ADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC---CchHHHHHHHHHHhhcCCh
Confidence 77777777888888888877776652 2444445555555555543
No 95
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.54 E-value=0.0082 Score=40.51 Aligned_cols=80 Identities=11% Similarity=0.114 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
..+.|+.+|+++.....-.++...+-.+-.++.+.|+.++|.++++. .+.+ +. +....-.+-.+|.+.|++++|++
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 36799999999875432122344455588999999999999999988 2221 11 22334455788999999999999
Q ss_pred HHHH
Q 047392 191 TFYR 194 (258)
Q Consensus 191 l~~~ 194 (258)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9986
No 96
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.48 E-value=0.14 Score=45.37 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=92.6
Q ss_pred CCCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH---HHHccCChHHHHHHHHHHHHc----------------
Q 047392 101 AYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGI---VFARGNNVKGLWDFLKEMSRR---------------- 161 (258)
Q Consensus 101 ~~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~---~~~~~g~~~~a~~~~~~m~~~---------------- 161 (258)
..++..-...+.+.|.++|++..+. |..+-.+|.+ .+-..|++++|++.|-.+..-
T Consensus 495 nkgn~~f~ngd~dka~~~ykeal~n-----dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 495 NKGNIAFANGDLDKAAEFYKEALNN-----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred cCCceeeecCcHHHHHHHHHHHHcC-----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455555567788999999888742 3333222222 234567788887777554322
Q ss_pred ----------------CCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047392 162 ----------------GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225 (258)
Q Consensus 162 ----------------g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 225 (258)
.+.| -|..+.+-|-+.|-+.|+-.+|.+.+.+--. -++-|..|...|-..|....-+++|..
T Consensus 570 ~led~aqaie~~~q~~slip-~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~ 647 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSLIP-NDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAIN 647 (840)
T ss_pred HhhCHHHHHHHHHHhcccCC-CCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHH
Confidence 1111 1444566666666666666666665443221 234466777777777888888899999
Q ss_pred HHHHhHhCCCCCCCCHHHHHHHHHHHH-HcCC
Q 047392 226 LLEQMELPGFRCPPDVYTYTILISSYC-KYGM 256 (258)
Q Consensus 226 ~f~~M~~~~~~~~pd~~ty~~li~~~~-~~g~ 256 (258)
+|++-.- +.|+..-|..||.+|. +.|+
T Consensus 648 y~ekaal----iqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 648 YFEKAAL----IQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHHHHh----cCccHHHHHHHHHHHHHhccc
Confidence 9988765 4599999999998876 4554
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.48 E-value=0.37 Score=41.57 Aligned_cols=85 Identities=13% Similarity=0.047 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
..++|.+.+++..+. -+.+...+..+-..+...|++++|...+++..+... .+......|-.+...+...|+.++|.
T Consensus 129 ~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 129 QYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 367777777776532 223345566666777777777777777777655421 12112234556667777777777777
Q ss_pred HHHHHHHh
Q 047392 190 ATFYRMKQ 197 (258)
Q Consensus 190 ~l~~~M~~ 197 (258)
+++++...
T Consensus 207 ~~~~~~~~ 214 (355)
T cd05804 207 AIYDTHIA 214 (355)
T ss_pred HHHHHHhc
Confidence 77777643
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.42 E-value=0.26 Score=39.86 Aligned_cols=122 Identities=11% Similarity=0.025 Sum_probs=84.8
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHcc--------CChHHHHHHHHHHHHcCCCCCcCHHHH--------
Q 047392 110 LGINKATEFYHWVERFFHFFHNE-VTCKEMGIVFARG--------NNVKGLWDFLKEMSRRGNGELVTTSTV-------- 172 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~-~~y~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~~~~t~-------- 172 (258)
..+++|.+.|++..+...-.|.. .++..+-.++.+. |+.++|.+.|++..+.... +...+
T Consensus 84 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~~~~ 160 (235)
T TIGR03302 84 GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN---SEYAPDAKKRMDY 160 (235)
T ss_pred CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC---ChhHHHHHHHHHH
Confidence 34779999999987543212221 1233333334433 6788999999999876421 11111
Q ss_pred ---------HHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 173 ---------TCLIKVLGEEGLVNEALATFYRMKQFR--CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 173 ---------~~li~~~~~~g~~~~a~~l~~~M~~~g--~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
-.+-..|.+.|+.++|...+++..... -+.....+..+...+.+.|+.++|..+++.+....
T Consensus 161 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 161 LRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 134566888999999999999987642 22345788999999999999999999999988653
No 99
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.35 E-value=0.21 Score=35.26 Aligned_cols=89 Identities=10% Similarity=-0.034 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 111 GINKATEFYHWVERFFHF-FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~-~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
..++|.+.|.++.....- ......+..+...+.+.|++++|...|++.....-........+..+-.++.+.|+.++|.
T Consensus 17 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~ 96 (119)
T TIGR02795 17 DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAK 96 (119)
T ss_pred CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHH
Confidence 366999999998754311 1113456668889999999999999999998753211112345778888899999999999
Q ss_pred HHHHHHHhCC
Q 047392 190 ATFYRMKQFR 199 (258)
Q Consensus 190 ~l~~~M~~~g 199 (258)
+.+++..+..
T Consensus 97 ~~~~~~~~~~ 106 (119)
T TIGR02795 97 ATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHC
Confidence 9999998763
No 100
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.32 E-value=0.26 Score=42.78 Aligned_cols=124 Identities=15% Similarity=0.057 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---------------------------------------cCHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL---------------------------------------VTTS 170 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---------------------------------------~~~~ 170 (258)
.+.........+|.+.|++.+...+...|.+.|.--+ -+..
T Consensus 185 r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~ 264 (400)
T COG3071 185 RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPE 264 (400)
T ss_pred CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChh
Confidence 3455677777888888888888888888877762110 1222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH------------------------------HHHHHHHHHHHcCCH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY------------------------------AYNVVINALCRVGNF 220 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~------------------------------ty~~li~~~~~~g~~ 220 (258)
.-.+++.-+.++|+.++|.++..+-.+.+..|+.. .+.+|=..|.+.+.|
T Consensus 265 l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w 344 (400)
T COG3071 265 LVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW 344 (400)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH
Confidence 45567777888999999999988877766555433 335555667789999
Q ss_pred HHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 221 ~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.+|.+.|+.-... .|+..+|+.+-.+|.+.|+.
T Consensus 345 ~kA~~~leaAl~~----~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 345 GKASEALEAALKL----RPSASDYAELADALDQLGEP 377 (400)
T ss_pred HHHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCh
Confidence 9999999966654 39999999999999998874
No 101
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.32 E-value=0.15 Score=43.18 Aligned_cols=113 Identities=16% Similarity=0.122 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHH---HHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHH-------HHHHHHh
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCK---EMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC-------LIKVLGE 181 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~---~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~-------li~~~~~ 181 (258)
.++|+++|-+|.+ -|..||. +|=+-|-+.|.+|.|.++...+.++ |+. |++- |-.=|.+
T Consensus 51 ~dKAvdlF~e~l~-----~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdl---T~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 51 PDKAVDLFLEMLQ-----EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDL---TFEQRLLALQQLGRDYMA 119 (389)
T ss_pred cchHHHHHHHHHh-----cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCC---chHHHHHHHHHHHHHHHH
Confidence 5699999999985 2333333 4556677889999999999999876 422 3443 4445778
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC
Q 047392 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~ 236 (258)
.|-+|.|+.+|....+.|. .-...---|+.-|-...+|++|.++-.+....+..
T Consensus 120 aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred hhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 8999999999999987442 23345677899999999999999999999886643
No 102
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.31 E-value=0.16 Score=37.10 Aligned_cols=92 Identities=9% Similarity=-0.011 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|.+.|+..... -+.+...|..+-..+.+.|++++|...++...+.+ +. +..++..+-.+|...|+.++|...
T Consensus 33 ~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~--~~~~~~~la~~~~~~g~~~~A~~~ 107 (135)
T TIGR02552 33 YDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PD--DPRPYFHAAECLLALGEPESALKA 107 (135)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC--ChHHHHHHHHHHHHcCCHHHHHHH
Confidence 56899999888643 23467788888889999999999999999987764 22 455677788899999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHH
Q 047392 192 FYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~l 210 (258)
|++..+. .|+...+..+
T Consensus 108 ~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 108 LDLAIEI--CGENPEYSEL 124 (135)
T ss_pred HHHHHHh--ccccchHHHH
Confidence 9998874 3665554433
No 103
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.30 E-value=0.25 Score=43.94 Aligned_cols=112 Identities=15% Similarity=0.072 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVT-CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~-y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.++|...+..+... .||-.. +......+.+.++.++|.+-++.+.... |.. ....-.+-.+|.+.|+..+|++
T Consensus 322 ~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~-~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 322 YDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNS-PLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred cchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCc-cHHHHHHHHHHHhcCChHHHHH
Confidence 66788888876532 255444 4445567788899999999998887752 321 3345566778888899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M 230 (258)
++++-... .+-|...|..|-.+|...|+..++..-..|+
T Consensus 396 ~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 396 ILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 88887754 3567888888888888877766666555554
No 104
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.23 E-value=0.23 Score=45.76 Aligned_cols=94 Identities=16% Similarity=0.143 Sum_probs=43.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD-VYAYNVVIN 212 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~li~ 212 (258)
.+|-|-..|-+.|++++|...|++-.+ +.|.. ...|+.|=..|-..|+++.|...+.+-... .|. ...++.|-.
T Consensus 390 a~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f-Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLas 464 (966)
T KOG4626|consen 390 AHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF-ADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLAS 464 (966)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH-HHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHH
Confidence 344444444455555555555544433 22211 113444444444444555555544444432 122 233455555
Q ss_pred HHHHcCCHHHHHHHHHHhHh
Q 047392 213 ALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 213 ~~~~~g~~~~a~~~f~~M~~ 232 (258)
.|-..|++.+|.+-|++-..
T Consensus 465 i~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 465 IYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HhhccCCcHHHHHHHHHHHc
Confidence 55556666666666666554
No 105
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.15 E-value=0.05 Score=40.76 Aligned_cols=71 Identities=27% Similarity=0.263 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH-----hCCCCCCCCHHHH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME-----LPGFRCPPDVYTY 244 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~-----~~~~~~~pd~~ty 244 (258)
....++..+...|++++|.++.+...... +.|...|-.+|.+|.+.|+...|.++|+++. +.|+. |+..|-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~--Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE--PSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS------HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC--cCHHHH
Confidence 46778888899999999999999998743 4578899999999999999999999999884 35755 887763
No 106
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.08 E-value=0.6 Score=37.79 Aligned_cols=137 Identities=14% Similarity=0.053 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+.|.+.|++... +.|+ ....|-.=.-+|..|++++|+..|++-...-.-+.+. .||..+--|..+.|+.+.|.+
T Consensus 85 ~~~A~e~YrkAls---l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s-~t~eN~G~Cal~~gq~~~A~~ 160 (250)
T COG3063 85 NDLADESYRKALS---LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPS-DTLENLGLCALKAGQFDQAEE 160 (250)
T ss_pred hhhHHHHHHHHHh---cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcc-hhhhhhHHHHhhcCCchhHHH
Confidence 4477777776552 2233 3345555556777788888888887766552212222 267777777788888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
.|++-.+.. +-...+.-.+-....+.|+.-.|..+++.....+. ++..+.-.-|+.--+.|+
T Consensus 161 ~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~---~~A~sL~L~iriak~~gd 222 (250)
T COG3063 161 YLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG---AQAESLLLGIRIAKRLGD 222 (250)
T ss_pred HHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc---ccHHHHHHHHHHHHHhcc
Confidence 888776642 12334455666777778888888888877777653 666665555555444444
No 107
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.06 E-value=0.28 Score=43.69 Aligned_cols=107 Identities=15% Similarity=0.189 Sum_probs=88.6
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHH
Q 047392 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD-VYAYNVVINALCRVGNFN 221 (258)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~li~~~~~~g~~~ 221 (258)
...|..++|+..++.+... .+- |..-.....+-+.+.++.++|.+-++.+... .|+ ...+-.+=.++.+.|+..
T Consensus 317 ~~~~~~d~A~~~l~~L~~~-~P~--N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA-QPD--NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHhcccchHHHHHHHHHHh-CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 3578899999999998877 333 6667777888999999999999999999874 466 445556668899999999
Q ss_pred HHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 222 ~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
+|..++++-.... .-|...|..|-.+|...|+.
T Consensus 392 eai~~L~~~~~~~---p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 392 EAIRILNRYLFND---PEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHHHHHhhcC---CCCchHHHHHHHHHHHhCch
Confidence 9999999998764 26778999999999999874
No 108
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.03 E-value=0.3 Score=40.71 Aligned_cols=107 Identities=10% Similarity=-0.002 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF--RCRPDVYAYNV 209 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~--g~~p~~~ty~~ 209 (258)
...|+..+.-+.+.|++++|...|+.+.+.-..-....-.+--+-..|...|++++|...|+.+.+. +-......+-.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4557777766677899999999999999874211111235667788899999999999999999753 11112333444
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH
Q 047392 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242 (258)
Q Consensus 210 li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ 242 (258)
+...+-..|+.++|..+|++....- |+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~y----P~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKY----PGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC----cCCH
Confidence 5556778999999999999998854 6654
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.02 E-value=0.4 Score=39.28 Aligned_cols=115 Identities=12% Similarity=0.003 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
...|+..|.+... .-++|...|+.+--+|-+.|++++|..-|.+-.+-- .- +...+|-|--.|.-.|+.+.|..+
T Consensus 116 ~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~--~p~~~nNlgms~~L~gd~~~A~~l 190 (257)
T COG5010 116 FGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PN--EPSIANNLGMSLLLRGDLEDAETL 190 (257)
T ss_pred hHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cC--CchhhhhHHHHHHHcCCHHHHHHH
Confidence 5689999998864 567899999999999999999999999999887762 22 333689999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
+.+-...+- -|...=..+.-.....|++++|+.+-..-..
T Consensus 191 ll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 191 LLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 999987653 2556667778888899999999998765544
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.97 E-value=0.34 Score=48.44 Aligned_cols=117 Identities=12% Similarity=0.124 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
-+...++|++....+ -.-..|..|...|.+.++.++|-++++.|.+. ++- ...+|...++.+.+..+-+.|.++
T Consensus 1513 eesl~kVFeRAcqyc---d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q--~~~vW~~y~~fLl~~ne~~aa~~l 1586 (1710)
T KOG1070|consen 1513 EESLKKVFERACQYC---DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQ--TRKVWIMYADFLLRQNEAEAAREL 1586 (1710)
T ss_pred HHHHHHHHHHHHHhc---chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcc--hhhHHHHHHHHHhcccHHHHHHHH
Confidence 345566666665321 22344666666666666677777777766655 322 333566666666666665555555
Q ss_pred HHHHHhCCCCC-------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 192 FYRMKQFRCRP-------------------------------------DVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 192 ~~~M~~~g~~p-------------------------------------~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
+.+..+. -| -.-.|+..|+.=.++|+.+.++.+|++....+
T Consensus 1587 L~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1587 LKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 5554331 12 12345666666666666666666666666655
Q ss_pred CC
Q 047392 235 FR 236 (258)
Q Consensus 235 ~~ 236 (258)
+.
T Consensus 1665 l~ 1666 (1710)
T KOG1070|consen 1665 LS 1666 (1710)
T ss_pred CC
Confidence 44
No 111
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.92 E-value=0.086 Score=48.36 Aligned_cols=114 Identities=14% Similarity=0.124 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcC----------------------------
Q 047392 112 INKATEFYHWVERFFHFFHNE-VTCKEMGIVFARGNNVKGLWDFLKEMSRRG---------------------------- 162 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~g---------------------------- 162 (258)
..+|+..|...+.. . +|. ....-+-.+|...++.++|.++|+...+..
T Consensus 335 ~~~A~~~~~klp~h--~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 335 CREALNLFEKLPSH--H-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHhhHHh--c-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 66888888876532 1 333 334445577888888999999998887763
Q ss_pred ----CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 163 ----NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 163 ----~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
.. .-...||.++=++|.-.++.+.|++.|++-.+.. | ...+|+.+=+-+.....+|.|+..|..-.
T Consensus 412 ~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 412 DLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 00 1134478888888888899999999888877632 3 44555444444555555555555555443
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.90 E-value=0.39 Score=48.02 Aligned_cols=115 Identities=14% Similarity=0.039 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 112 INKATEFYHWVERFFHFFH---NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
++.|.+++++....-++.- -.-.|.++++--.--|.-+...++|++..+.- . ...+|..|..-|.+.+..++|
T Consensus 1474 iekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d---~~~V~~~L~~iy~k~ek~~~A 1549 (1710)
T KOG1070|consen 1474 IEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D---AYTVHLKLLGIYEKSEKNDEA 1549 (1710)
T ss_pred hHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c---hHHHHHHHHHHHHHhhcchhH
Confidence 4577777777654322221 13457788887777787888999999988763 2 234799999999999999999
Q ss_pred HHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 189 LATFYRMKQ-FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 189 ~~l~~~M~~-~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
.++++.|.+ .| -....|...++.+.+..+-+.|.+++++-..
T Consensus 1550 ~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1550 DELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 999999976 34 4566777777777777776666666655543
No 113
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.23 Score=45.01 Aligned_cols=139 Identities=13% Similarity=0.050 Sum_probs=101.4
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCC--cCHHHHHHHHHHHHhcCC
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG--NGEL--VTTSTVTCLIKVLGEEGL 184 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~--~~~~t~~~li~~~~~~g~ 184 (258)
..+.+.|.++|.+... -.+-|...++-+--..-..+.+.+|...|..-...- ..+. --.-+++-|=+.|.|.++
T Consensus 393 t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred hccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 4447788888877652 233445566665555556777888888887765220 0010 022357888899999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHc
Q 047392 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254 (258)
Q Consensus 185 ~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~ 254 (258)
.++|+.-|+.-... .+-|..||.++=-.|...|+++.|.+.|++-.. +.||-.+-+.|++.+...
T Consensus 471 ~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~----l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 471 YEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA----LKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh----cCCccHHHHHHHHHHHHh
Confidence 99999999998764 256888999998899999999999999999885 449999999988876543
No 114
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.88 E-value=0.076 Score=34.40 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=31.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 177 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
..|.+.+++++|.++++++...+ +-+...|...=..+.+.|++++|.+.|++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 34555666666666666665532 2233444444455556666666666666666533
No 115
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=95.87 E-value=0.68 Score=42.24 Aligned_cols=141 Identities=13% Similarity=0.062 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhhCC--CCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcC----CCC-CcCHHHHHHHHHHHH
Q 047392 112 INKATEFYHWVERFFH--FFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRRG----NGE-LVTTSTVTCLIKVLG 180 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~--~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~-~~~~~t~~~li~~~~ 180 (258)
.++|..+++...+..- +.++ ..+|+.|-..|-..|++++|+++|++..... ..- .-....++-|-..|.
T Consensus 341 ~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~ 420 (508)
T KOG1840|consen 341 YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE 420 (508)
T ss_pred hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH
Confidence 5677777665433221 2233 3578899999999999999999998866541 111 111235788888999
Q ss_pred hcCChHHHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh----CCCCCCCCHHHHHHHHHH
Q 047392 181 EEGLVNEALATFYRMK----QFR--CRPDVYAYNVVINALCRVGNFNKARFLLEQMEL----PGFRCPPDVYTYTILISS 250 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~----~~g--~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~----~~~~~~pd~~ty~~li~~ 250 (258)
+.++.++|.++|.+-+ ..| .+-...+|..|...|-+.|++++|.++-+.... .+....|+..........
T Consensus 421 ~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (508)
T KOG1840|consen 421 ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLAD 500 (508)
T ss_pred HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhH
Confidence 9999999999999854 333 222347799999999999999999999877642 222234777777666655
Q ss_pred HH
Q 047392 251 YC 252 (258)
Q Consensus 251 ~~ 252 (258)
+.
T Consensus 501 ~~ 502 (508)
T KOG1840|consen 501 LS 502 (508)
T ss_pred HH
Confidence 54
No 116
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.84 E-value=0.31 Score=42.52 Aligned_cols=95 Identities=8% Similarity=-0.066 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+++|++.|++.... -+-+...|..+-.+|.+.|++++|...+++..+.. | .+...|..+-.+|...|++++|...
T Consensus 18 ~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P-~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 18 FALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--P-SLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 66999999998743 22456678788889999999999999999998864 2 2556788888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHH
Q 047392 192 FYRMKQFRCRPDVYAYNVVINA 213 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~ 213 (258)
|++..+. .|+......++..
T Consensus 93 ~~~al~l--~P~~~~~~~~l~~ 112 (356)
T PLN03088 93 LEKGASL--APGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHh--CCCCHHHHHHHHH
Confidence 9999874 3666555555433
No 117
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.84 E-value=0.48 Score=42.91 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 047392 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193 (258)
Q Consensus 114 ~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~ 193 (258)
...+.+++........|+. +|..+|+..-|..-++.|..+|.+..+.+..+ -++++++++|.-||. ++.+-|.+||+
T Consensus 349 ~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~-hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTR-HHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc-chhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 3444455544444455544 56667788788888999999999998887654 478889999998875 57788999998
Q ss_pred H-HHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCH--HHHHHHHHHHHHcCCC
Q 047392 194 R-MKQFRCRPDVYA-YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV--YTYTILISSYCKYGMQ 257 (258)
Q Consensus 194 ~-M~~~g~~p~~~t-y~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~--~ty~~li~~~~~~g~~ 257 (258)
- |+..| |... -+..++-+.+.++-..|.-+|++....+++ ||. ..|..+|+-=+.-|++
T Consensus 426 LGLkkf~---d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~--~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 426 LGLKKFG---DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS--ADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHHhcC---CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC--hhhhHHHHHHHHHHHHhcccH
Confidence 7 44544 3333 367788888899999999999999988654 554 5788888776666653
No 118
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.80 E-value=0.8 Score=37.07 Aligned_cols=136 Identities=11% Similarity=-0.026 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
+...|.+-+++..+. .|+ ..+|.++-..|-+.|..+.|.+-|+.-.... |+ +..+.|.-=.-+|..|++++|.
T Consensus 50 d~~~A~~nlekAL~~---DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~-~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 50 DYAQAKKNLEKALEH---DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PN-NGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred CHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CC-ccchhhhhhHHHHhCCChHHHH
Confidence 366666666665532 243 4567777788888888888888888766542 21 1123444444567788888888
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCH-HHHHHHHHHHHHcCC
Q 047392 190 ATFYRMKQFR-CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV-YTYTILISSYCKYGM 256 (258)
Q Consensus 190 ~l~~~M~~~g-~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~-~ty~~li~~~~~~g~ 256 (258)
.-|++-...- ..--..||..+--+..+.|+.+.|++.|++-.... |+. .+.-.|-....+.|+
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d----p~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD----PQFPPALLELARLHYKAGD 188 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC----cCCChHHHHHHHHHHhccc
Confidence 8888876531 11123466677777778888888888888877644 332 234444444444443
No 119
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.72 E-value=0.61 Score=41.72 Aligned_cols=125 Identities=17% Similarity=0.130 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+..|..+|+..... . ..+...|--.+..=.++..+..|.-+++.-..- -|.+|. .|---+.+=-..|++..|.+|
T Consensus 89 ~~RARSv~ERALdv-d-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdq-lWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 89 IQRARSVFERALDV-D-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQ-LWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHhc-c-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHH-HHHHHHHHHHHhcccHHHHHH
Confidence 45666666655431 1 233334444444444555555555555554432 122232 233333444444555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
|++-.+ ..||...|++.|.-=.+-..++.|..+|++.+-.+ |++.+|---
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H----P~v~~wiky 213 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH----PKVSNWIKY 213 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec----ccHHHHHHH
Confidence 555433 34555555555555555555555555555555432 555554433
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.69 E-value=0.45 Score=37.81 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=79.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCC--HH
Q 047392 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL-CRVGN--FN 221 (258)
Q Consensus 145 ~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~-~~~g~--~~ 221 (258)
.++.+++...++...+.. ..|...|..|-..|...|++++|...|++..+.. +-|...+..+-.++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~~---P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcH
Confidence 566677777777766653 2267789999999999999999999999988754 23666677776654 67777 59
Q ss_pred HHHHHHHHhHhCCCCCCC-CHHHHHHHHHHHHHcCCC
Q 047392 222 KARFLLEQMELPGFRCPP-DVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 222 ~a~~~f~~M~~~~~~~~p-d~~ty~~li~~~~~~g~~ 257 (258)
+|.+++++..+.+ | +...+..+-..+.+.|++
T Consensus 128 ~A~~~l~~al~~d----P~~~~al~~LA~~~~~~g~~ 160 (198)
T PRK10370 128 QTREMIDKALALD----ANEVTALMLLASDAFMQADY 160 (198)
T ss_pred HHHHHHHHHHHhC----CCChhHHHHHHHHHHHcCCH
Confidence 9999999999866 5 455677777777777764
No 121
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.69 E-value=0.56 Score=42.57 Aligned_cols=172 Identities=13% Similarity=-0.001 Sum_probs=107.1
Q ss_pred HHHhcCCccccccccccCCCCCCcccchh-----H-------hhhhhHHHHHHHHHHHHhCccCCCCccccccCHHHHHH
Q 047392 50 DVLKSIPRFFFQSPRSIGRQTGFRHRTPL-----K-------QRILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATE 117 (258)
Q Consensus 50 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l-----~-------~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~a~~ 117 (258)
-++.-+|..+..+..+.| |+.++.. . -++.......+.|...+..+..... .....+.|.+
T Consensus 182 L~lSlLPp~~~kll~~vG----F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~---~~~~~~~a~~ 254 (468)
T PF10300_consen 182 LVLSLLPPKVLKLLSFVG----FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDG---EDVPLEEAEE 254 (468)
T ss_pred HHHHhCCHHHHHHHhhcC----cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcc---cCCCHHHHHH
Confidence 334448887776666654 5666652 0 1111112233455555555554410 2233779999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHH-HHHHccCChHHHHHHHHHHHHcC-CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047392 118 FYHWVERFFHFFHNEVTCKEMG-IVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195 (258)
Q Consensus 118 ~f~~m~~~~~~~p~~~~y~~li-~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M 195 (258)
+++++..++ |+..-|...- +.+...|++++|.+.|++..+.. .-+......|=-+.-++.-..++++|.+.|.++
T Consensus 255 lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 255 LLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 999998764 8877776444 33456799999999999765421 112334455666777788999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHH-HcCCH-------HHHHHHHHHhHh
Q 047392 196 KQFRCRPDVYAYNVVINALC-RVGNF-------NKARFLLEQMEL 232 (258)
Q Consensus 196 ~~~g~~p~~~ty~~li~~~~-~~g~~-------~~a~~~f~~M~~ 232 (258)
.+..- -+..+|.-+..+|. ..|+. ++|.++|.+...
T Consensus 332 ~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 332 LKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred Hhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 87431 23444444443332 46777 889999988753
No 122
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.68 E-value=0.44 Score=42.38 Aligned_cols=100 Identities=9% Similarity=-0.011 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT--TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty 207 (258)
.+...|+.+-.+|.+.|++++|...|++-.+.. |+.. ..+|..+-.+|++.|+.++|++.+++..+.+ .+ -|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence 456778889999999999999999999977653 4212 1469999999999999999999999988742 11 12
Q ss_pred HHHHH--HHHHcCCHHHHHHHHHHhHhCCC
Q 047392 208 NVVIN--ALCRVGNFNKARFLLEQMELPGF 235 (258)
Q Consensus 208 ~~li~--~~~~~g~~~~a~~~f~~M~~~~~ 235 (258)
..+.. .+..-.+.++..++++++...|.
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 21111 11122233456666666666654
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=0.65 Score=38.41 Aligned_cols=115 Identities=13% Similarity=0.131 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFA----RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
++.|.+..++|.+- -+..|.+-|-+++. ..+++.+|.-+|++|-++ ..| +..+-|-+..++...|++++
T Consensus 153 ~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~--T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 153 FDLAEKELKKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPP--TPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCC--ChHHHccHHHHHHHhcCHHH
Confidence 67888888888742 45667776666654 345688999999999875 556 77789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhHhCC
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVG-NFNKARFLLEQMELPG 234 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g-~~~~a~~~f~~M~~~~ 234 (258)
|..++++..... .-+..|...+|-+--..| +.+-..+...+.+...
T Consensus 226 Ae~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 226 AESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred HHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 999999987643 234555555555444445 4566677777777654
No 124
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.59 E-value=0.055 Score=35.69 Aligned_cols=62 Identities=21% Similarity=0.286 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 170 STVTCLIKVLGEEGLVNEALATFYRMKQ----FRC-RPD-VYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 170 ~t~~~li~~~~~~g~~~~a~~l~~~M~~----~g~-~p~-~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
.+|+.+-..|...|++++|+..|++..+ .|- .|+ ..+++.+-..+...|+.++|+++|++-.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3677788888888888888888888653 221 122 5667777778888888888888887654
No 125
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.59 E-value=0.078 Score=33.57 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=46.1
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 139 GIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 139 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
-..+.+.|++++|.+.|++..+.. |. +...+..+-.++...|++++|...|++..+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456778999999999999998875 21 566788888999999999999999999865
No 126
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.51 E-value=0.63 Score=33.82 Aligned_cols=105 Identities=18% Similarity=0.082 Sum_probs=67.8
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHH-HHHHHHHHHH
Q 047392 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD---VYA-YNVVINALCR 216 (258)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~---~~t-y~~li~~~~~ 216 (258)
++-..|+.++|..+|++-.+.|.....-...+=.+-..|...|+.++|..+|++..... |+ ... ...+--++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHH
Confidence 44567888888888888888775432222234456667778888888888888876531 43 111 1122235667
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 217 ~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
.|+.++|.+.+-+-.. ++...|.--|..|..
T Consensus 88 ~gr~~eAl~~~l~~la------~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA------ETLPRYRRAIRFYAD 118 (120)
T ss_pred CCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHh
Confidence 7888888888866553 444477777776654
No 127
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.47 E-value=0.12 Score=48.51 Aligned_cols=130 Identities=15% Similarity=0.121 Sum_probs=87.7
Q ss_pred HHHHHHHHhC--ccCCCCccccccCHHHHHHHHHHHH--------hhCCCCCCHH--------------HHHHHHHHH--
Q 047392 89 NIANNVLVLG--PAAYRNPQKVTLGINKATEFYHWVE--------RFFHFFHNEV--------------TCKEMGIVF-- 142 (258)
Q Consensus 89 ~~~~~~l~~g--~~~~~~~~~~~~~~~~a~~~f~~m~--------~~~~~~p~~~--------------~y~~li~~~-- 142 (258)
.++-..++.| |...++.|..+.+++.|++.|++-. .++.++..++ -|.+.|+.|
T Consensus 652 ~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfie 731 (1636)
T KOG3616|consen 652 EHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIE 731 (1636)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHH
Confidence 4555566666 6678899999999999999987521 0112221111 233333333
Q ss_pred -----------HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 143 -----------ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 143 -----------~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
.++..+.+|..+++.+.+.... ..-|.-+.+-|+..|+++.|.++|.+-.. ++--|
T Consensus 732 a~~~~kaieaai~akew~kai~ildniqdqk~~----s~yy~~iadhyan~~dfe~ae~lf~e~~~---------~~dai 798 (1636)
T KOG3616|consen 732 ANCLIKAIEAAIGAKEWKKAISILDNIQDQKTA----SGYYGEIADHYANKGDFEIAEELFTEADL---------FKDAI 798 (1636)
T ss_pred hhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccc----cccchHHHHHhccchhHHHHHHHHHhcch---------hHHHH
Confidence 3445566778888888776432 22477788889999999999999877532 56778
Q ss_pred HHHHHcCCHHHHHHHHHHhH
Q 047392 212 NALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~ 231 (258)
..|.++|+|++|.++-.+..
T Consensus 799 ~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 799 DMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred HHHhccccHHHHHHHHHHhc
Confidence 88999999999988876654
No 128
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.31 E-value=0.5 Score=35.95 Aligned_cols=92 Identities=11% Similarity=-0.040 Sum_probs=74.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 217 (258)
+-.-+...|++++|..+|+-...-... +..-|-.|=-+|-..|++++|+..|....... +-|...+=.+=.++...
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~---~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW---SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 445567899999999999998776421 44456677778888899999999999988765 35777777788899999
Q ss_pred CCHHHHHHHHHHhHhC
Q 047392 218 GNFNKARFLLEQMELP 233 (258)
Q Consensus 218 g~~~~a~~~f~~M~~~ 233 (258)
|+.+.|++.|+.-+..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987764
No 129
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.20 E-value=0.13 Score=32.93 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhHh
Q 047392 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG-NFNKARFLLEQMEL 232 (258)
Q Consensus 169 ~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g-~~~~a~~~f~~M~~ 232 (258)
..+|..+=..+...|++++|+..|++..+.. +-+...|..+=.++.+.| +.++|.+.|++-.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456666666666666666666666665532 224445555555566666 56666666665543
No 130
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.07 E-value=1.2 Score=34.34 Aligned_cols=101 Identities=14% Similarity=0.134 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC------
Q 047392 112 INKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL------ 184 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~------ 184 (258)
.++|.+.|++......-.++ ...|..+-..+.+.|+.++|...+++..+.. | -+...+..+-..|...|+
T Consensus 51 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 51 YAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--P-KQPSALNNIAVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c-ccHHHHHHHHHHHHHcCChHhHhh
Confidence 66999999987643211122 4678888899999999999999999988763 2 134466777777777776
Q ss_pred --------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047392 185 --------VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (258)
Q Consensus 185 --------~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 219 (258)
+++|.+++++... .+...|..++..+...|+
T Consensus 128 ~~~~A~~~~~~A~~~~~~a~~----~~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 128 DQDEAEALFDKAAEYWKQAIR----LAPNNYIEAQNWLKTTGR 166 (172)
T ss_pred CHHHHHHHHHHHHHHHHHHHh----hCchhHHHHHHHHHhcCc
Confidence 3555555555544 233335555555555543
No 131
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.94 E-value=0.23 Score=42.62 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 209 (258)
|+..-|-.-|.+|+..+++++-..+... + -.| +-|-..+.+|.+.|+..+|.....++ ++..
T Consensus 206 ~dkrfw~lki~aLa~~~~w~eL~~fa~s---k-KsP----IGyepFv~~~~~~~~~~eA~~yI~k~----------~~~~ 267 (319)
T PF04840_consen 206 PDKRFWWLKIKALAENKDWDELEKFAKS---K-KSP----IGYEPFVEACLKYGNKKEASKYIPKI----------PDEE 267 (319)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C-CCC----CChHHHHHHHHHCCCHHHHHHHHHhC----------ChHH
Confidence 4444455555555555555544443221 1 111 22555555555555555555444441 1133
Q ss_pred HHHHHHHcCCHHHHHHH
Q 047392 210 VINALCRVGNFNKARFL 226 (258)
Q Consensus 210 li~~~~~~g~~~~a~~~ 226 (258)
-+..|.++|++.+|.+.
T Consensus 268 rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 268 RVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHCCCHHHHHHH
Confidence 44455555555555444
No 132
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.94 E-value=1.3 Score=40.72 Aligned_cols=123 Identities=13% Similarity=-0.006 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHcc--------CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhc
Q 047392 112 INKATEFYHWVERFFHFFHNE-VTCKEMGIVFARG--------NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEE 182 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~-~~y~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~ 182 (258)
.+.|.++|++..+ ..|+- ..|..+..++... .++.++.+..++....... ..+...|.++--.....
T Consensus 358 ~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~-~~~~~~~~ala~~~~~~ 433 (517)
T PRK10153 358 LNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL-NVLPRIYEILAVQALVK 433 (517)
T ss_pred HHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC-cCChHHHHHHHHHHHhc
Confidence 6788999988774 33663 2333332222111 1123334444332221111 12445788876666778
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHH
Q 047392 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244 (258)
Q Consensus 183 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty 244 (258)
|++++|...+++..+.+ |+...|..+-..+...|+.++|.+.|++-.... |...||
T Consensus 434 g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~----P~~pt~ 489 (517)
T PRK10153 434 GKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR----PGENTL 489 (517)
T ss_pred CCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCchH
Confidence 99999999999999865 788899999999999999999999999988744 665554
No 133
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=2.1 Score=38.32 Aligned_cols=127 Identities=10% Similarity=0.009 Sum_probs=68.8
Q ss_pred ccCCCCccccccCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHH
Q 047392 99 PAAYRNPQKVTLGINKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK 177 (258)
Q Consensus 99 ~~~~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~ 177 (258)
++-.++-|+....-++|+..|+...+ +-|. ...|+.+-+-|....+...|.+-++.-.+-. ..|-..|-.|=.
T Consensus 333 CCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~---p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 333 CCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN---PRDYRAWYGLGQ 406 (559)
T ss_pred eeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC---chhHHHHhhhhH
Confidence 45555556666668999999998773 2243 4567777788888888888887777766542 113333444444
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 178 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
+|.-.+...-|+-.|++-.... +-|...|.+|=++|.+.++.++|.+.|.+-..
T Consensus 407 aYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 4444444444444444333211 12334444444444444444444444444443
No 134
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.83 E-value=0.12 Score=34.08 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCC-cC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRG--NGEL-VT-TSTVTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~-~~-~~t~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
.+|+.+-..|.+.|++++|.+.|++..+-. .++. ++ ..+++.+-.+|...|+.++|++.+++-.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 468888899999999999999998876541 2221 22 5678999999999999999999998864
No 135
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.79 E-value=1.4 Score=37.49 Aligned_cols=129 Identities=11% Similarity=0.117 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc--cCC----hHHHHHHHHHHHHcCCCC-CcCHHHHHHHHHHHHhcCC
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFAR--GNN----VKGLWDFLKEMSRRGNGE-LVTTSTVTCLIKVLGEEGL 184 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~--~g~----~~~a~~~~~~m~~~g~~~-~~~~~t~~~li~~~~~~g~ 184 (258)
+++.+++++.|. +.|++.+..+|-+....... ..+ ...|.++|+.|++...-. .++-.++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~-~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLK-EAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHH-HhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 668889999998 55888888777663333333 222 457999999999985322 2355678888776 3333
Q ss_pred ----hHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCC---HHHHHHHHHHhHhCCCCCCCCHHHHH
Q 047392 185 ----VNEALATFYRMKQFRCRPDVY-AYNVVINALCRVGN---FNKARFLLEQMELPGFRCPPDVYTYT 245 (258)
Q Consensus 185 ----~~~a~~l~~~M~~~g~~p~~~-ty~~li~~~~~~g~---~~~a~~~f~~M~~~~~~~~pd~~ty~ 245 (258)
.++++..|+.+...|+..+-. -+-+-|-+++.... +..+.++++.+.+.|++ +....|.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k--ik~~~yp 221 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK--IKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc--ccccccc
Confidence 467788888888888766543 34444444443322 55789999999999965 5544444
No 136
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.74 E-value=0.33 Score=31.27 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=50.4
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 047392 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206 (258)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~t 206 (258)
..+.+.+++++|.++++.+.+.+ | .+...|...-.++.+.|++++|.+.|++..+.+ |+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~--p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--P-DDPELWLQRARCLFQLGRYEEALEDLERALELS--PDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--c-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC--CCcHH
Confidence 56788999999999999998874 2 155678888889999999999999999998753 55444
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.73 E-value=1.6 Score=41.94 Aligned_cols=130 Identities=17% Similarity=0.106 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH--HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVF--ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
+..|+....+..+++ |+. .|..++.++ .|.|+.++|..+++.....+ ++ |..|...+-.+|-..|+.++|.
T Consensus 25 fkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK--GT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CC-chHHHHHHHHHHHHHhhhhHHH
Confidence 568888888877665 443 355556655 48899999999998886654 22 8889999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
.++++.... -|+..-...+..+|+|.+++.+..+.--+|-+ .++ -+...|-++++.+.+
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~p--k~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFP--KRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCC--cccchHHHHHHHHHH
Confidence 999998764 48888888999999999987764444434433 221 344556666665544
No 138
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.63 E-value=0.28 Score=31.26 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG-LVNEALATFYRMKQ 197 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g-~~~~a~~l~~~M~~ 197 (258)
+...|..+-..+.+.|++++|...|.+..+.. | -+...|..+-.+|.+.| ++++|++.|++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--P-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--T-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45678888889999999999999999998874 2 25668888999999999 79999999988764
No 139
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.61 E-value=2.8 Score=36.55 Aligned_cols=89 Identities=6% Similarity=-0.006 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.+.|-.+..+..+. --.++...+-+...-+...|+...|..-+++..+.+-. +...-.....+|.+.|++.+...+
T Consensus 134 ~~~an~yL~eaae~-~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr---~~~vlrLa~r~y~~~g~~~~ll~~ 209 (400)
T COG3071 134 EDRANRYLAEAAEL-AGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR---HPEVLRLALRAYIRLGAWQALLAI 209 (400)
T ss_pred HHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC---ChHHHHHHHHHHHHhccHHHHHHH
Confidence 44555555555532 11345555666667777888888888888888776532 345788999999999999999999
Q ss_pred HHHHHhCCCCCCH
Q 047392 192 FYRMKQFRCRPDV 204 (258)
Q Consensus 192 ~~~M~~~g~~p~~ 204 (258)
+..|.+.|.--|.
T Consensus 210 l~~L~ka~~l~~~ 222 (400)
T COG3071 210 LPKLRKAGLLSDE 222 (400)
T ss_pred HHHHHHccCCChH
Confidence 9999988865443
No 140
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=0.52 Score=40.63 Aligned_cols=122 Identities=8% Similarity=0.099 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHH-HHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCL-IKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~l-i~~~~~~g~~~~a~~ 190 (258)
+++.+-..+.++ .+-.--|...|| +-++.+-.|...+|+++|-......+ -|.++|-++ ..||.++|+.+-|++
T Consensus 375 FddVl~YlnSi~-sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i---kn~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 375 FDDVLTYLNSIE-SYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI---KNKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHH-HHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh---hhhHHHHHHHHHHHHhcCCchHHHH
Confidence 444444444444 333344555555 56777778888888888866543322 256677654 467888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHH
Q 047392 191 TFYRMKQFRCRPDVYAYNVVI-NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li-~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~ 245 (258)
++-.|.-. .+..+.--+| +-|-+++.+--|-+.|+++.... |+..-|.
T Consensus 450 ~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD----P~pEnWe 498 (557)
T KOG3785|consen 450 MMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEILD----PTPENWE 498 (557)
T ss_pred HHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC----CCccccC
Confidence 87776532 2333333333 55668888888888888887754 6666554
No 141
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.57 E-value=1.7 Score=36.93 Aligned_cols=118 Identities=9% Similarity=0.199 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHccCCh----HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC-
Q 047392 112 INKATEFYHWVERFFHF--FHNEVTCKEMGIVFARGNNV----KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL- 184 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~--~p~~~~y~~li~~~~~~g~~----~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~- 184 (258)
...|.++|+.|++.+.+ .++-.++.+|+.. ...++ +.++..|+.+.+.|+...-+...-+.++..+-....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 67999999999976644 3555667777665 34443 568888999999888765454444444443333322
Q ss_pred -hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHhHh
Q 047392 185 -VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN-----FNKARFLLEQMEL 232 (258)
Q Consensus 185 -~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~-----~~~a~~~f~~M~~ 232 (258)
+.++.++++.+++.|+++....|.. |..++-.++ ++...++.+++.+
T Consensus 197 ~v~r~~~l~~~l~~~~~kik~~~yp~-lGlLall~~~~~~~~~~i~ev~~~L~~ 249 (297)
T PF13170_consen 197 KVARVIELYNALKKNGVKIKYMHYPT-LGLLALLEDPEEKIVEEIKEVIDELKE 249 (297)
T ss_pred HHHHHHHHHHHHHHcCCccccccccH-HHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 4589999999999999998887743 444443333 3444555555544
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.55 E-value=0.49 Score=45.18 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=87.0
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 047392 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVL--GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220 (258)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~--~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~ 220 (258)
...+++.+|....+.+.++. | |. .|..+++++ .+.|+.++|.++++.....+.. |..|..++-.+|-+.|..
T Consensus 20 ld~~qfkkal~~~~kllkk~--P--n~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--P--NA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--C--Cc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 35678899999999988773 3 43 477777776 5789999999999999876655 999999999999999999
Q ss_pred HHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 221 ~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
++|..+|++..+.. |+..-...+..+|.|.++
T Consensus 94 d~~~~~Ye~~~~~~----P~eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 94 DEAVHLYERANQKY----PSEELLYHLFMAYVREKS 125 (932)
T ss_pred hHHHHHHHHHHhhC----CcHHHHHHHHHHHHHHHH
Confidence 99999999999755 998888888888888664
No 143
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=94.48 E-value=2.2 Score=38.86 Aligned_cols=118 Identities=13% Similarity=0.124 Sum_probs=95.0
Q ss_pred ccCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHH-HHHcCCCCCcCHHHHHHHHHHHHhcCChH
Q 047392 109 TLGINKATEFYHWVERFFHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKE-MSRRGNGELVTTSTVTCLIKVLGEEGLVN 186 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~-m~~~g~~~~~~~~t~~~li~~~~~~g~~~ 186 (258)
.-+++.|..+|.+..+. +..+ ++..++++|.-+| .++.+-|.++|+- |+.-|- +..--..-++-+..-++-.
T Consensus 379 ~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d----~p~yv~~YldfL~~lNdd~ 452 (656)
T KOG1914|consen 379 AEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD----SPEYVLKYLDFLSHLNDDN 452 (656)
T ss_pred hhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHhCcch
Confidence 34489999999999854 5555 8999999999998 5677889999976 444442 2223466778889999999
Q ss_pred HHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 187 EALATFYRMKQFRCRPDV--YAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 187 ~a~~l~~~M~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
.|..+|++....++.||- ..|..+|+-=..-|++..+.++=+++..
T Consensus 453 N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 453 NARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999988776654 7899999999999999999999888764
No 144
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=0.42 Score=41.17 Aligned_cols=91 Identities=13% Similarity=0.092 Sum_probs=48.8
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHH
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV-INALCR 216 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l-i~~~~~ 216 (258)
+-+++.-..+++++...++.++.--..- |.+.|| +..+++..|...+|+++|-......+ -|-.+|-++ -.+|.+
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~Nd--D~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTND--DDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc--chhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHh
Confidence 3334444445666666666655542222 443333 45666666777777777655543322 234444433 355666
Q ss_pred cCCHHHHHHHHHHhHh
Q 047392 217 VGNFNKARFLLEQMEL 232 (258)
Q Consensus 217 ~g~~~~a~~~f~~M~~ 232 (258)
++..+.|+++|-.|-.
T Consensus 441 nkkP~lAW~~~lk~~t 456 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNT 456 (557)
T ss_pred cCCchHHHHHHHhcCC
Confidence 6677777666655543
No 145
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.38 E-value=1.2 Score=37.34 Aligned_cols=118 Identities=13% Similarity=0.172 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcc-CChHHHHHHHHHHHHc----CCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCC
Q 047392 134 TCKEMGIVFARG-NNVKGLWDFLKEMSRR----GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC-----RPD 203 (258)
Q Consensus 134 ~y~~li~~~~~~-g~~~~a~~~~~~m~~~----g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~-----~p~ 203 (258)
++..+-..|-.. |++++|.+.|++-.+- | .+..-..++..+...+.+.|++++|.++|++....-. ..+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 566666667777 8899988888765443 3 2222234677888999999999999999999876432 223
Q ss_pred HHH-HHHHHHHHHHcCCHHHHHHHHHHhHhC--CCCCCCCHHHHHHHHHHHH
Q 047392 204 VYA-YNVVINALCRVGNFNKARFLLEQMELP--GFRCPPDVYTYTILISSYC 252 (258)
Q Consensus 204 ~~t-y~~li~~~~~~g~~~~a~~~f~~M~~~--~~~~~pd~~ty~~li~~~~ 252 (258)
+.. |-..+-++...|+...|.+.|++.... ++.-.........||.+|-
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 322 223333556679999999999998764 3321122345566666653
No 146
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=2.7 Score=37.61 Aligned_cols=116 Identities=13% Similarity=0.077 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ----FRCRPDVY 205 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~----~g~~p~~~ 205 (258)
-|...|.+|-.+|.+.+++++|.+.|..-...| +.+...|..|-+.|-+.++.++|...|+.-.+ .|..-+..
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~---dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t 506 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG---DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDET 506 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc---ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHH
Confidence 345667777777777777777777777766665 22334566777777777777777666665443 23222211
Q ss_pred HH--HHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHH
Q 047392 206 AY--NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252 (258)
Q Consensus 206 ty--~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~ 252 (258)
.+ --|-.-+.+.+++++|...-.+....+ +...-=+.|++.+.
T Consensus 507 ~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~----~e~eeak~LlReir 551 (559)
T KOG1155|consen 507 IKARLFLAEYFKKMKDFDEASYYATLVLKGE----TECEEAKALLREIR 551 (559)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhcCC----chHHHHHHHHHHHH
Confidence 11 113344556666766666555554422 44444555555444
No 147
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.36 E-value=0.87 Score=40.86 Aligned_cols=78 Identities=6% Similarity=0.106 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
+++|.+=|++... +.|. ...|--+-.+.-|.+++++++..|++-+++ ++- -..+||-.-..+...+++++|.+
T Consensus 410 ~e~A~aDF~Kai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~--~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 410 YEEAIADFQKAIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPN--CPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC--CchHHHHHHHHHhhHHhHHHHHH
Confidence 5555555555431 2222 223333333344555555555555555554 333 22245555555555555555555
Q ss_pred HHHHH
Q 047392 191 TFYRM 195 (258)
Q Consensus 191 l~~~M 195 (258)
-|+..
T Consensus 484 ~YD~a 488 (606)
T KOG0547|consen 484 QYDKA 488 (606)
T ss_pred HHHHH
Confidence 55554
No 148
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=0.28 Score=41.51 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=63.2
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC---CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 047392 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203 (258)
Q Consensus 127 ~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~ 203 (258)
|...+..+-..++..-....+++.+...+-.++..- ..+.-+.+||--++.- =+.++++-++..=.+.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhccccc
Confidence 445555556666666555666666666665554431 1222233333333332 256677777777777777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 204 VYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 204 ~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
..|++.+|+.|.+.++..+|.++..+|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7777777777777777777777766666544
No 149
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.25 E-value=1.5 Score=31.86 Aligned_cols=102 Identities=12% Similarity=0.018 Sum_probs=68.2
Q ss_pred cCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 110 LGINKATEFYHWVERFFHFFHN--EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
...++|+.+|++-.. .|.... ...+-.+-+.+-..|++++|..++++.....-....+.....-+--++...|+.++
T Consensus 15 G~~~~Ai~~Y~~Al~-~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~e 93 (120)
T PF12688_consen 15 GREEEAIPLYRRALA-AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKE 93 (120)
T ss_pred CCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHH
Confidence 346799999999874 466544 22344466778899999999999999887632111111122223347788899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCR 216 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~ 216 (258)
|++.+-.-.. ++...|.--|..|+.
T Consensus 94 Al~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 94 ALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 9999877654 455567666666653
No 150
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.23 E-value=0.61 Score=41.46 Aligned_cols=118 Identities=15% Similarity=0.060 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY-NVV 210 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty-~~l 210 (258)
...|...|+..-|..-++.|..+|-+..+.|+ ...++..++++|.-+| .|+...|.+||+-=... .||...| +-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~-~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI-VGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-CCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 44677788888888888999999999988883 2338888999998776 46777888888763332 3555554 566
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhCCCCCCCC--HHHHHHHHHHHHHcCC
Q 047392 211 INALCRVGNFNKARFLLEQMELPGFRCPPD--VYTYTILISSYCKYGM 256 (258)
Q Consensus 211 i~~~~~~g~~~~a~~~f~~M~~~~~~~~pd--~~ty~~li~~~~~~g~ 256 (258)
+.-+.+.++-+.|..+|+.-+.+ +.-+ ...|..||+-=.+.|+
T Consensus 473 l~fLi~inde~naraLFetsv~r---~~~~q~k~iy~kmi~YEs~~G~ 517 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER---LEKTQLKRIYDKMIEYESMVGS 517 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH---HHHhhhhHHHHHHHHHHHhhcc
Confidence 67777888888888888844332 1122 3467777766555554
No 151
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=94.22 E-value=1.2 Score=33.51 Aligned_cols=83 Identities=17% Similarity=0.103 Sum_probs=39.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcC---CCCCcCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGL-VNEALATFYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~t~~~li~~~~~~g~-~~~a~~l~~~M~~~g~~p~~~ty~~l 210 (258)
.|++++-.+.-+++.....+++.+..-. +.-..+-.+|.+++.+.++... ---+..+|.-|++.+.+++..-|..|
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555555555555542221 0001122245555555544444 33445555555555555555555555
Q ss_pred HHHHHHc
Q 047392 211 INALCRV 217 (258)
Q Consensus 211 i~~~~~~ 217 (258)
|.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 5555444
No 152
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.22 E-value=0.8 Score=40.80 Aligned_cols=87 Identities=23% Similarity=0.129 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhHhCC-CC-----C
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV----YAYNVVINALCRVGNFNKARFLLEQMELPG-FR-----C 237 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~~f~~M~~~~-~~-----~ 237 (258)
+...++.+-.+|.+.|++++|+..|++-.+. .||. .+|..+-.+|.+.|+.++|.+.+++..+.+ .. -
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~~ 151 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILN 151 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHHh
Confidence 5567899999999999999999999997764 4774 469999999999999999999999988742 10 1
Q ss_pred CCCH------HHHHHHHHHHHHcCC
Q 047392 238 PPDV------YTYTILISSYCKYGM 256 (258)
Q Consensus 238 ~pd~------~ty~~li~~~~~~g~ 256 (258)
.||. ..|..++....+.|.
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhCC
Confidence 1333 257778888877774
No 153
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.10 E-value=0.89 Score=38.11 Aligned_cols=79 Identities=8% Similarity=0.080 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-----FRCRPDVYA 206 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~-----~g~~p~~~t 206 (258)
..++..++..+...|+.+.+.+.++++.... .-+...|..||.+|.+.|+...|+..|+.+.+ .|+.|...+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d---p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD---PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 4467777888888888888888888888774 23666788888888888888888888887754 688888888
Q ss_pred HHHHHHH
Q 047392 207 YNVVINA 213 (258)
Q Consensus 207 y~~li~~ 213 (258)
.......
T Consensus 230 ~~~y~~~ 236 (280)
T COG3629 230 RALYEEI 236 (280)
T ss_pred HHHHHHH
Confidence 7766666
No 154
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.02 E-value=0.73 Score=39.55 Aligned_cols=93 Identities=14% Similarity=0.035 Sum_probs=69.7
Q ss_pred hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 047392 125 FFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204 (258)
Q Consensus 125 ~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~ 204 (258)
.++......+.+..|.-|...|....|.++-.+.+ .|+..-|-..|.+|+..|+|++-.++... .-.+
T Consensus 170 ~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk------v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsP 237 (319)
T PF04840_consen 170 KYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFK------VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSP 237 (319)
T ss_pred HhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcC------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCC
Confidence 33433334466667778888888888888766652 23777899999999999999987776443 1245
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 047392 205 YAYNVVINALCRVGNFNKARFLLEQ 229 (258)
Q Consensus 205 ~ty~~li~~~~~~g~~~~a~~~f~~ 229 (258)
+-|--++..|.+.|+.++|..+..+
T Consensus 238 IGyepFv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 238 IGYEPFVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred CChHHHHHHHHHCCCHHHHHHHHHh
Confidence 8899999999999999999988877
No 155
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.95 E-value=4 Score=37.60 Aligned_cols=132 Identities=16% Similarity=0.087 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHccCChHHHHHHHH--------HHHHcCCCCCcCHHHHHHHHHHHHhc
Q 047392 113 NKATEFYHWVERFFHFFHN--EVTCKEMGIVFARGNNVKGLWDFLK--------EMSRRGNGELVTTSTVTCLIKVLGEE 182 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~--~~~y~~li~~~~~~g~~~~a~~~~~--------~m~~~g~~~~~~~~t~~~li~~~~~~ 182 (258)
..|.+++...-+. . |. ...-=+++.-....|+++.|.+++. .+.+-+..| . +-.+++..|.+.
T Consensus 358 ~ka~e~L~~~~~~--~-p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~--~V~aiv~l~~~~ 430 (652)
T KOG2376|consen 358 KKAIELLLQFADG--H-PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--G--TVGAIVALYYKI 430 (652)
T ss_pred hhhHHHHHHHhcc--C-CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--h--HHHHHHHHHHhc
Confidence 3455555554422 1 22 2334455666788999999999998 555555544 4 578888999999
Q ss_pred CChHHHHHHHHHHHhC--CCCCCHHHHHHHHHH----HHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHc
Q 047392 183 GLVNEALATFYRMKQF--RCRPDVYAYNVVINA----LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254 (258)
Q Consensus 183 g~~~~a~~l~~~M~~~--g~~p~~~ty~~li~~----~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~ 254 (258)
++-+.|-.++++-... .-.+.....++++.- =-++|+-++|..+++++.+..- +|..+...++.+|++.
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~---~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP---NDTDLLVQLVTAYARL 505 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC---chHHHHHHHHHHHHhc
Confidence 9988888888886541 122333444444443 3478999999999999998532 8899999999999874
No 156
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.93 E-value=4.2 Score=36.63 Aligned_cols=84 Identities=15% Similarity=0.077 Sum_probs=62.6
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047392 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222 (258)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~ 222 (258)
-..|++..|.++|+.-.+- .|+...|++.|+.=.+.+.++.|..|+++..- +.|++.+|--...-=-++|++..
T Consensus 152 E~LgNi~gaRqiferW~~w----~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW----EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHhcccHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence 3457788888888777553 33777788888888888888888888888765 34888888766666667888888
Q ss_pred HHHHHHHhHh
Q 047392 223 ARFLLEQMEL 232 (258)
Q Consensus 223 a~~~f~~M~~ 232 (258)
|..+|+.-++
T Consensus 226 aR~VyerAie 235 (677)
T KOG1915|consen 226 ARSVYERAIE 235 (677)
T ss_pred HHHHHHHHHH
Confidence 8888877665
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.90 E-value=2.7 Score=38.70 Aligned_cols=123 Identities=11% Similarity=-0.020 Sum_probs=83.3
Q ss_pred CCCCCHHHHHHHHHHHHccC--C---hHHHHHHHHHHHHcCCCCCcC-HHHHHHHHHHHHhc--------CChHHHHHHH
Q 047392 127 HFFHNEVTCKEMGIVFARGN--N---VKGLWDFLKEMSRRGNGELVT-TSTVTCLIKVLGEE--------GLVNEALATF 192 (258)
Q Consensus 127 ~~~p~~~~y~~li~~~~~~g--~---~~~a~~~~~~m~~~g~~~~~~-~~t~~~li~~~~~~--------g~~~~a~~l~ 192 (258)
+.+.|...|...+.|..... . .++|.++|++..+.. | + ...|..+..+|... ++++.+.+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P--~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--P--DFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--C--CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 45678899999999865432 2 668999999998863 3 3 23344433333222 1233444444
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 193 YRMKQF-RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 193 ~~M~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
++.... ....+...|.++--.....|++++|...+++....+ |+...|..+-+.|...|+.
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~----ps~~a~~~lG~~~~~~G~~ 469 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE----MSWLNYVLLGKVYELKGDN 469 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHcCCH
Confidence 443332 234456778777555667899999999999999854 9988999999999988874
No 158
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=1.6 Score=42.78 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|.++|++.. -+....+.||.- .+.++.|.++-++..+ | . +|+.+-.+-...|.+.+|.+-
T Consensus 1064 yEEAF~ifkkf~------~n~~A~~VLie~---i~~ldRA~efAe~~n~----p--~--vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1064 YEEAFAIFKKFD------MNVSAIQVLIEN---IGSLDRAYEFAERCNE----P--A--VWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred HHHHHHHHHHhc------ccHHHHHHHHHH---hhhHHHHHHHHHhhCC----h--H--HHHHHHHHHHhcCchHHHHHH
Confidence 456666665543 233344444432 2455555555544311 1 2 466666666666666666655
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|-+- -|+..|.-+|+...+.|.+++-.+++.-.+++.- +|.+. +.||-+|++.|++
T Consensus 1127 yika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~--E~~id--~eLi~AyAkt~rl 1182 (1666)
T KOG0985|consen 1127 YIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR--EPYID--SELIFAYAKTNRL 1182 (1666)
T ss_pred HHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc--Cccch--HHHHHHHHHhchH
Confidence 5443 2555666666666666666666665554444432 24433 3566666665543
No 159
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=93.35 E-value=6.5 Score=36.20 Aligned_cols=98 Identities=11% Similarity=0.116 Sum_probs=73.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~ 213 (258)
++.-+-+.|-+.|+.++|++.+++-++.. |. .+..|-.--..|-+.|++++|.+..++-..... -|-..=+-....
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy 271 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHT--PT-LVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHH
Confidence 44555667778899999999998877752 31 144677777788888999999988888876432 356666677788
Q ss_pred HHHcCCHHHHHHHHHHhHhCCC
Q 047392 214 LCRVGNFNKARFLLEQMELPGF 235 (258)
Q Consensus 214 ~~~~g~~~~a~~~f~~M~~~~~ 235 (258)
+.|+|++++|.+++......+.
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCC
Confidence 8889999999998888877664
No 160
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.33 E-value=1.5 Score=36.74 Aligned_cols=77 Identities=18% Similarity=0.143 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh-----CCCCCCCCHHHHH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVYTYT 245 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~-----~~~~~~pd~~ty~ 245 (258)
+++.++..+..+|+.+.+.+.+++..... +-|...|-.+|.+|.+.|+...|...|+++.+ .|+. |-..+..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~--P~~~~~~ 231 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID--PAPELRA 231 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC--ccHHHHH
Confidence 68999999999999999999999998753 46889999999999999999999999998865 5755 9888877
Q ss_pred HHHHH
Q 047392 246 ILISS 250 (258)
Q Consensus 246 ~li~~ 250 (258)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66665
No 161
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.10 E-value=1.8 Score=36.59 Aligned_cols=97 Identities=9% Similarity=0.015 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc-----------------CH--HHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV-----------------TT--STV 172 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-----------------~~--~t~ 172 (258)
.++|++-|+...+..|+.| ...||..+..|. .|+...|++...+++++|+.-.| |. ..-
T Consensus 160 yEaAvqkFqaAlqvsGyqp-llAYniALaHy~-~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQP-LLAYNLALAHYS-SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHh-hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 7899999999887778876 668997776664 67899999999999999854322 11 123
Q ss_pred HHHHHH-------HHhcCChHHHHHHHHHHH-hCCCCCCHHHHHHH
Q 047392 173 TCLIKV-------LGEEGLVNEALATFYRMK-QFRCRPDVYAYNVV 210 (258)
Q Consensus 173 ~~li~~-------~~~~g~~~~a~~l~~~M~-~~g~~p~~~ty~~l 210 (258)
+.++.+ +-+.|+.+.|.+-+-.|- ......|++|...+
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 444444 456789999999888885 23344566665443
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=93.03 E-value=2.2 Score=32.65 Aligned_cols=81 Identities=16% Similarity=-0.031 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHH
Q 047392 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP--DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246 (258)
Q Consensus 169 ~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p--~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~ 246 (258)
...|..+...+...|++++|...|++.....-.+ ...+|..+=..+.+.|+.++|...+++.....- ....++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~---~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP---FLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---CcHHHHHH
Confidence 3457778888888999999999999997643222 235788888899999999999999999886431 33445666
Q ss_pred HHHHHH
Q 047392 247 LISSYC 252 (258)
Q Consensus 247 li~~~~ 252 (258)
+-..+.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 655555
No 163
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.96 E-value=3.2 Score=35.59 Aligned_cols=119 Identities=14% Similarity=0.003 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
++-|+.+|..+. +.|+. +..-|+.+--+|.-.+.++-++.-|.+-...-..|..-..+|-.|=......||+.-|.+-
T Consensus 340 PE~AlryYRRiL-qmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 340 PEMALRYYRRIL-QMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred hHHHHHHHHHHH-HhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence 455555555554 33442 2223333333444445555555544444433322322222344444444445555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
|+-...+. .-+...+|.|--.-.+.|++++|..+++--...
T Consensus 418 frlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 418 FRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 55544332 123456777766677888888888888877653
No 164
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.70 E-value=2.1 Score=32.08 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDVYAYNVV 210 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g-~~p~~~ty~~l 210 (258)
...|+.-...+ +.|++++|.+.|+.+..+--...-.....-.|+.+|-+.|++++|...+++..+.. -.|+ +-|-..
T Consensus 11 ~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y 88 (142)
T PF13512_consen 11 QELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYY 88 (142)
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHH
Confidence 34455444444 57889999999999988732222344466778999999999999999999987742 2333 345555
Q ss_pred HHHHHH
Q 047392 211 INALCR 216 (258)
Q Consensus 211 i~~~~~ 216 (258)
+.|++.
T Consensus 89 ~~gL~~ 94 (142)
T PF13512_consen 89 MRGLSY 94 (142)
T ss_pred HHHHHH
Confidence 566554
No 165
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.65 E-value=0.63 Score=43.86 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
|..|+.+.+.+.++. .-..-|..+-..|+..|+++.|+++|.+- + .|+.-|.+|.+.|+|++|.++
T Consensus 748 w~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~--~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 748 WKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTEA---------D--LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHhc---------c--hhHHHHHHHhccccHHHHHHH
Confidence 566677766665321 22334777888999999999999999652 4 388899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f 227 (258)
-++.. |-.-....|-+--.-+-++|++.+|+++|
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 87653 32234444544444455666666666655
No 166
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.44 E-value=2.7 Score=35.06 Aligned_cols=90 Identities=7% Similarity=0.024 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChH
Q 047392 111 GINKATEFYHWVERFFHFFHNE----VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~ 186 (258)
+.++|+..|+.....+ |+. ..+--+-..|...|++++|...|+.+.+.-..-......+-.+..+|...|+.+
T Consensus 158 ~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 158 RQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred CHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 3678898998887543 443 345567788889999999999999998762110011223444566778999999
Q ss_pred HHHHHHHHHHhCCCCCCHH
Q 047392 187 EALATFYRMKQFRCRPDVY 205 (258)
Q Consensus 187 ~a~~l~~~M~~~g~~p~~~ 205 (258)
+|.++|++..+. .|+..
T Consensus 235 ~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 235 KAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHHHHH--CcCCH
Confidence 999999998764 25543
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.22 E-value=3.5 Score=34.69 Aligned_cols=103 Identities=12% Similarity=0.030 Sum_probs=80.0
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 047392 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220 (258)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~ 220 (258)
-+.+.+++.+|...|.+-++-. | -|.+-|.---.+|++.|.++.|++=.+.-.... +--..+|..|=-+|.-.|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~--P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD--P-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC--C-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 3567889999999999988753 1 267778888999999999999998777766521 11235677777888889999
Q ss_pred HHHHHHHHHhHhCCCCCCCCHHHHHHHHHHH
Q 047392 221 NKARFLLEQMELPGFRCPPDVYTYTILISSY 251 (258)
Q Consensus 221 ~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~ 251 (258)
++|.+.|++-.. +.|+-.+|..=|+.-
T Consensus 166 ~~A~~aykKaLe----ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 166 EEAIEAYKKALE----LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHhhhc----cCCCcHHHHHHHHHH
Confidence 999999998886 449988887766543
No 168
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=92.12 E-value=4 Score=30.68 Aligned_cols=97 Identities=10% Similarity=0.151 Sum_probs=76.7
Q ss_pred HHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 047392 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC-----RPDVYAYNVVINALCRVGN-FNKARFLLEQ 229 (258)
Q Consensus 156 ~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~-----~p~~~ty~~li~~~~~~g~-~~~a~~~f~~ 229 (258)
.-|.+++..+..-....|+++.-.+..+++.....+++.+..... ..|..+|++++.+.++..- ---+..+|+-
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 345656666644556789999999999999999999988854211 4678899999999977766 4468889999
Q ss_pred hHhCCCCCCCCHHHHHHHHHHHHHc
Q 047392 230 MELPGFRCPPDVYTYTILISSYCKY 254 (258)
Q Consensus 230 M~~~~~~~~pd~~ty~~li~~~~~~ 254 (258)
|++.+.. +...-|..||+++.+.
T Consensus 106 Lk~~~~~--~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 106 LKKNDIE--FTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHcCCC--CCHHHHHHHHHHHHcC
Confidence 9998855 9999999999998765
No 169
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=92.09 E-value=2.7 Score=40.39 Aligned_cols=94 Identities=13% Similarity=0.092 Sum_probs=66.1
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047392 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (258)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 219 (258)
-++.+....+....+..-..+..+.+.-++..|.-+.++|-..|++++|+++|......-.--+...|--+-.+|-..|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 44455555566666666666666555555666778888888888888888888888765545556677777777777888
Q ss_pred HHHHHHHHHHhHhC
Q 047392 220 FNKARFLLEQMELP 233 (258)
Q Consensus 220 ~~~a~~~f~~M~~~ 233 (258)
.++|.+.|+.....
T Consensus 465 ~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 465 YEEAIEFYEKVLIL 478 (895)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888887763
No 170
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=92.09 E-value=6 Score=36.42 Aligned_cols=82 Identities=17% Similarity=0.155 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
++.-|-..|-..|+.++|++..++-.++ .|+ +.-|.+--..+-+.|++++|.+.+++-..... -|...=+-..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~---~DRyiNsK~aK 270 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL---ADRYINSKCAK 270 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh---hhHHHHHHHHH
Confidence 4455677788889999999999988775 466 55666667778889999999999988887654 56666677777
Q ss_pred HHHHcCCC
Q 047392 250 SYCKYGMQ 257 (258)
Q Consensus 250 ~~~~~g~~ 257 (258)
.+.|+|++
T Consensus 271 y~LRa~~~ 278 (517)
T PF12569_consen 271 YLLRAGRI 278 (517)
T ss_pred HHHHCCCH
Confidence 77777765
No 171
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=92.04 E-value=12 Score=36.14 Aligned_cols=119 Identities=13% Similarity=0.071 Sum_probs=89.6
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
++.++|.+++.+.-+. -+.+...|-+|-..|-..|+.+++...+ |......|+ |..-|-.+-+.....|++++|.
T Consensus 153 g~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p~-d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFW--LLAAHLNPK-DYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred CCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHH--HHHHhcCCC-ChHHHHHHHHHHHhcccHHHHH
Confidence 3367999999887643 3456778999999999999999887665 334444442 4457888888899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
-.|.+..+.. +++...+--=...|-+.|+...|++-|.+|.+..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~ 271 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD 271 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC
Confidence 9999988753 3444444455567778899999999999998754
No 172
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.02 E-value=2.7 Score=30.97 Aligned_cols=114 Identities=11% Similarity=0.151 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
......+++.+... + ..+...+|.+|..|++.. .++..+.+.. .. +.+....++..|-+.+-++++..+
T Consensus 23 ~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~~-----~~yd~~~~~~~c~~~~l~~~~~~l 91 (140)
T smart00299 23 LEELIPYLESALKL-N-SENPALQTKLIELYAKYD-PQKEIERLDN---KS-----NHYDIEKVGKLCEKAKLYEEAVEL 91 (140)
T ss_pred HHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---cc-----ccCCHHHHHHHHHHcCcHHHHHHH
Confidence 55556666665533 3 245666777777777653 2334444432 11 111245567777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRV-GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~-g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
+.++.. |...+..+.+. ++.+.|.+++.+- -|...|..++..+..
T Consensus 92 ~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~--------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 92 YKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ--------NNPELWAEVLKALLD 137 (140)
T ss_pred HHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC--------CCHHHHHHHHHHHHc
Confidence 776643 23333444444 6777777776651 345578877776653
No 173
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.79 E-value=0.071 Score=39.75 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=69.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047392 137 EMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216 (258)
Q Consensus 137 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~ 216 (258)
.+|+.+.+.+.++....+++.+...+... +....|.++..|++.++.++..++++... + .-...++..|-+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~--~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~ 82 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKEN--NPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEK 82 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC---SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhccccc--CHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHh
Confidence 35666777777888888888887665333 56678888888888877777777777221 1 222345555556
Q ss_pred cCCHHHHHHHHHHhHhCCC------------------CCCCCHHHHHHHHHHHHHcCCC
Q 047392 217 VGNFNKARFLLEQMELPGF------------------RCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 217 ~g~~~~a~~~f~~M~~~~~------------------~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.|.+++|..++.++....- .-.+|...|..+++.|...+..
T Consensus 83 ~~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 83 HGLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp TTSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTCT
T ss_pred cchHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCcc
Confidence 6666666666555432110 0125677888888888766543
No 174
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.66 E-value=2.5 Score=41.48 Aligned_cols=101 Identities=13% Similarity=0.149 Sum_probs=70.8
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
.+++.|.++-+... ....|+.+-.+-.+.|.+.+|.+-|-+ .. |...|.-+|+...+.|.+++-.
T Consensus 1089 ~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAieSyik---ad-----Dps~y~eVi~~a~~~~~~edLv 1153 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAIESYIK---AD-----DPSNYLEVIDVASRTGKYEDLV 1153 (1666)
T ss_pred hhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHHHHHHh---cC-----CcHHHHHHHHHHHhcCcHHHHH
Confidence 34666666654443 234588888888888888888776633 21 2335888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f 227 (258)
+.+...++..-+|.+.+ .||-+|++.+++.+.+++.
T Consensus 1154 ~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1154 KYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh
Confidence 88887777766676664 7888888888877766653
No 175
>PLN02789 farnesyltranstransferase
Probab=91.64 E-value=8.1 Score=33.23 Aligned_cols=131 Identities=9% Similarity=0.022 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCCh--HHH
Q 047392 113 NKATEFYHWVERFFHFFHNE-VTCKEMGIVFARGN-NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLV--NEA 188 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~~-~~y~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~--~~a 188 (258)
++|+++..+.... .|+- .+|+.--..+.+.| .+++++++++++.+...+ +..+|+..-..+.+.|+. +++
T Consensus 54 erAL~lt~~aI~l---nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk---nyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 54 PRALDLTADVIRL---NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK---NYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred HHHHHHHHHHHHH---CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc---chHHhHHHHHHHHHcCchhhHHH
Confidence 3788888887632 2433 34554444455556 578999999999887422 444677665556666653 678
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
..++++|.+.. +-|..+|+-.--.+.+.|+++++.+.++++.+.+. -|...|+..--.+.+
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~---~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV---RNNSAWNQRYFVITR 188 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC---CchhHHHHHHHHHHh
Confidence 88888887643 34778888888888888999999999999998764 345555554444433
No 176
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.56 E-value=7.2 Score=32.52 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=82.0
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH-----HHhcCChHHHHH
Q 047392 116 TEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV-----LGEEGLVNEALA 190 (258)
Q Consensus 116 ~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~-----~~~~g~~~~a~~ 190 (258)
+.++++..+ ..-+-+..--..|.+.-.+.|+.+.|...|++..+..-.. |..+++.++.. |.-.+++..|..
T Consensus 197 ~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL--~~~q~~~~V~~n~a~i~lg~nn~a~a~r 273 (366)
T KOG2796|consen 197 VDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL--DGLQGKIMVLMNSAFLHLGQNNFAEAHR 273 (366)
T ss_pred HHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh--hccchhHHHHhhhhhheecccchHHHHH
Confidence 444555443 2223445555666666678899999999999887664333 55566666543 455678888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHH
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~ 251 (258)
.|++..... ..|.+.-|.=--+..-.|+..+|.+..+.|++.- |...+-++++-.+
T Consensus 274 ~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~----P~~~l~es~~~nL 329 (366)
T KOG2796|consen 274 FFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD----PRHYLHESVLFNL 329 (366)
T ss_pred HHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC----CccchhhhHHHHH
Confidence 888876532 1244444433333334689999999999999854 7777766655443
No 177
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=91.44 E-value=8.4 Score=37.61 Aligned_cols=130 Identities=11% Similarity=0.182 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
...++.++...-...+ -|.+..+.|-+.|.--|+++.++.+.+.+......-..-...|--+-.+|-..|++++|...
T Consensus 252 ~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 5566666665554433 34556777888888999999999999988776422212233577788889999999999999
Q ss_pred HHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 192 FYRMKQFRCRPDV--YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 192 ~~~M~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
|.+-.+. .+|. -.+--|-+.+.+.|+++.+...|+...... ||-.--..++.
T Consensus 330 Y~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~----p~~~etm~iLG 383 (1018)
T KOG2002|consen 330 YMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL----PNNYETMKILG 383 (1018)
T ss_pred HHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC----cchHHHHHHHH
Confidence 8777653 3444 334567788999999999999999998754 66544333333
No 178
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.22 E-value=6.3 Score=35.62 Aligned_cols=117 Identities=11% Similarity=0.056 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-----CCcCHHHHHHHHHHHHhcCChH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-----ELVTTSTVTCLIKVLGEEGLVN 186 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----~~~~~~t~~~li~~~~~~g~~~ 186 (258)
+++++..|++..++ ++-....||..-..+.-.+++++|.+.|+.-++---. ..+...+--+++ .+-..+++.
T Consensus 444 ~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~ 520 (606)
T KOG0547|consen 444 IAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDIN 520 (606)
T ss_pred HHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchhhhHH
Confidence 66666666666543 3344456666666677777777777777665543110 000111111111 122446677
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 187 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
.|.+++.+-.+.. +-....|-+|-..-.+.|++++|.++|++-..
T Consensus 521 ~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 521 QAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7777776665532 12234466666666677777777777766543
No 179
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.15 E-value=7.8 Score=32.61 Aligned_cols=114 Identities=12% Similarity=0.057 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEE---GLVNEALATFYRMKQFRCRPDVYA 206 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~---g~~~~a~~l~~~M~~~g~~p~~~t 206 (258)
-|...|-.|-..|.+.|+.+.|..-|.+-.+- -+.+++ .+..+-.++... ....++.++|+++.... +-|+.+
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~--~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira 229 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPE--ILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRA 229 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHH--HHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence 46778999999999999999999999887665 233224 455444444333 34668999999998743 234455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHH
Q 047392 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251 (258)
Q Consensus 207 y~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~ 251 (258)
-.-|-..+...|++.+|...|+.|.+.. |.-..+..+|..-
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~ 270 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERS 270 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHH
Confidence 5555677889999999999999999865 6666677776543
No 180
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.93 E-value=3.9 Score=37.42 Aligned_cols=100 Identities=13% Similarity=0.153 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhhC-CC---C-CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChH
Q 047392 112 INKATEFYHWVERFF-HF---F-HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~-~~---~-p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~ 186 (258)
+.+|...|+.....- .+ + .-..+++-|-+.|-+.++.++|...|++-.... +- |..||+++-..|...|+++
T Consensus 430 y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k--~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 430 YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PK--DASTHASIGYIYHLLGNLD 506 (611)
T ss_pred hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CC--chhHHHHHHHHHHHhcChH
Confidence 778888888765211 01 1 134567888899999999999999999987763 22 6778999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047392 187 EALATFYRMKQFRCRPDVYAYNVVINALCR 216 (258)
Q Consensus 187 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~ 216 (258)
.|.+-|.+-.. +.||-++-..++..+..
T Consensus 507 ~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 507 KAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 99999998764 57998888888775544
No 181
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.43 E-value=9.8 Score=32.04 Aligned_cols=138 Identities=9% Similarity=0.096 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc-c-CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFAR-G-NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~-~-g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
+.+|+.+|+...-+..+.-|...-..|++.... . .+...-.++.+-+... .+-.++..+.-++|..+++.+++.+-.
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t-~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVST-FSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhc-cccCCChhHHHHHHHHHHhcccHHHHH
Confidence 667777777433222455677777778877765 2 2344556666666543 222345557888899999999999988
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----hHhCCCCCCCCHHHHHHHHHHHH
Q 047392 190 ATFYRMKQF-RCRPDVYAYNVVINALCRVGNFNKARFLLEQ-----MELPGFRCPPDVYTYTILISSYC 252 (258)
Q Consensus 190 ~l~~~M~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~-----M~~~~~~~~pd~~ty~~li~~~~ 252 (258)
++++.-... +..-|...|..+|......|+..-+..+.++ +++.|+. -+...-..+-+.+-
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~--v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVD--VTDELRSQLSELFK 289 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCc--CCHHHHHHHHHHHH
Confidence 888887654 5667888899999999999998877776654 2444543 44444444444443
No 182
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=90.33 E-value=4 Score=38.46 Aligned_cols=127 Identities=11% Similarity=0.012 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
..+|+..|+... .|.-+|-+|+..|+..+|.++..+-.++ ++|..-|..+-+.....--+++|+++
T Consensus 414 tksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek----~~d~~lyc~LGDv~~d~s~yEkawEl 479 (777)
T KOG1128|consen 414 TKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEK----DPDPRLYCLLGDVLHDPSLYEKAWEL 479 (777)
T ss_pred HHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcC----CCcchhHHHhhhhccChHHHHHHHHH
Confidence 556666666655 3777899999999999999998887763 33666788888777666667888888
Q ss_pred HHHHHhC-----CCC----CC------------------HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH-H
Q 047392 192 FYRMKQF-----RCR----PD------------------VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY-T 243 (258)
Q Consensus 192 ~~~M~~~-----g~~----p~------------------~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~-t 243 (258)
++.-... |.. +| ..||=..=.+..+.++++.|.+.|..-... .||-. .
T Consensus 480 sn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL----~Pd~~ea 555 (777)
T KOG1128|consen 480 SNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL----EPDNAEA 555 (777)
T ss_pred hhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc----CCCchhh
Confidence 7764321 110 11 122222222233678889999999988873 37655 5
Q ss_pred HHHHHHHHHHcCC
Q 047392 244 YTILISSYCKYGM 256 (258)
Q Consensus 244 y~~li~~~~~~g~ 256 (258)
||.+=.+|.+.|+
T Consensus 556 WnNls~ayi~~~~ 568 (777)
T KOG1128|consen 556 WNNLSTAYIRLKK 568 (777)
T ss_pred hhhhhHHHHHHhh
Confidence 9999999988775
No 183
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.09 E-value=2.3 Score=29.87 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..+-++.+-...+.|++....+.+.+|-|.+++..|.++|+-.+.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333334444444445555555555555455555555555544443
No 184
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=89.99 E-value=8.4 Score=36.43 Aligned_cols=132 Identities=8% Similarity=-0.041 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+.++.+-|+.-.+-... ...+|-.+=.+..+.+++..|.+-|..-..- .|+ +...||.+-.+|.+.|+-.+|...
T Consensus 501 fs~~~~hle~sl~~npl--q~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd-~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 501 FSEADKHLERSLEINPL--QLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPD-NAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred HHHHHHHHHHHhhcCcc--chhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCC-chhhhhhhhHHHHHHhhhHHHHHH
Confidence 44555555443322111 1234444445555778888888888776543 221 445799999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHH
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~ 250 (258)
+.|-.+.+ .-+...|-.-+....+.|.+++|.+.+.+|...... .-|...-..++..
T Consensus 576 l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~-~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 576 LKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK-YKDDEVLLIIVRT 632 (777)
T ss_pred HHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh-cccchhhHHHHHH
Confidence 99998876 456666777788889999999999999998764332 1244444444433
No 185
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.87 E-value=9.5 Score=31.69 Aligned_cols=99 Identities=15% Similarity=0.094 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCH-HHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE--LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-FRCRPDV-YAY 207 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~-~g~~p~~-~ty 207 (258)
...|+.-+..+ +.|++..|..-|....+..-.- .+|. +-=|-.++...|++++|-.+|..+.+ .+-.|-. .+.
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 33688777665 5788999999999999884221 1232 44478899999999999999999976 3333332 556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 208 NVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 208 ~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
--|-.+..+.|+.++|...|++..+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 66777788999999999999999875
No 186
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.86 E-value=12 Score=35.19 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC----CCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG----NGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
++.++.+++.-.. -+...-+-.|..+++.+++++|-+.+....... ..-+.+...|+-+-+-.++..+.-.
T Consensus 154 Pets~rvyrRYLk-----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~ 228 (835)
T KOG2047|consen 154 PETSIRVYRRYLK-----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQ 228 (835)
T ss_pred hHHHHHHHHHHHh-----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhc
Confidence 4567777766552 233336778888999999999888887765541 1112355556666666666655443
Q ss_pred HHHHHHHHHh-CCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 188 ALATFYRMKQ-FRCRPDV--YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 188 a~~l~~~M~~-~g~~p~~--~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
-+.+=.-|+. .+.-+|. .-|++|-+.|.+.|+++.|.++|++-.+.- -.+.-|..+.++|++
T Consensus 229 slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v----~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 229 SLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV----MTVRDFTQIFDAYAQ 293 (835)
T ss_pred ccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh----eehhhHHHHHHHHHH
Confidence 3333222222 1233454 357888888888888888888888877643 344456666666654
No 187
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.78 E-value=11 Score=34.95 Aligned_cols=109 Identities=10% Similarity=0.049 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHH----HHHHHhcCChHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCL----IKVLGEEGLVNE 187 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~l----i~~~~~~g~~~~ 187 (258)
.++|+..-.++.. +.+-+...+..=+-++.+.+++++|+.+.+.- + -..+++.. ..|.-+.++.|+
T Consensus 28 ~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~-----~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 28 YEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKN---G-----ALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---c-----hhhhcchhhHHHHHHHHHcccHHH
Confidence 5688888888773 33455666777777888889999888555432 1 11123333 344456788999
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHhCCC
Q 047392 188 ALATFYRMKQFRCRPDVY-AYNVVINALCRVGNFNKARFLLEQMELPGF 235 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~-ty~~li~~~~~~g~~~~a~~~f~~M~~~~~ 235 (258)
|++.++ |+.++.. +-..=-+.|-+.|++++|.++|+.+..++.
T Consensus 98 alk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 98 ALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 998888 4444443 444444667788999999999999977664
No 188
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.74 E-value=5.1 Score=31.18 Aligned_cols=101 Identities=8% Similarity=-0.044 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF---RCRPDVYAYN 208 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~---g~~p~~~ty~ 208 (258)
...+..+..-|++.|+.+.|.+.|.++.+....+..-...+-.+|......+++..+.....+.+.. |-..+...--
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4568889999999999999999999999986555444446778888889999999999888887652 2222222211
Q ss_pred HHHHHH--HHcCCHHHHHHHHHHhHh
Q 047392 209 VVINAL--CRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 209 ~li~~~--~~~g~~~~a~~~f~~M~~ 232 (258)
....|+ ...|++..|-+.|-+...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 222332 246889999999887754
No 189
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.64 E-value=4.3 Score=28.21 Aligned_cols=44 Identities=9% Similarity=-0.013 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 151 a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
+.+-++.+......| +..+.++-+.+|-|..++.-|.++|+-.+
T Consensus 26 ~rr~mN~l~~~DlVP--~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVP--EPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCC--CcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444333434 33345555555555555555555555544
No 190
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.56 E-value=15 Score=33.83 Aligned_cols=140 Identities=12% Similarity=0.087 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+.+..++|-++....+-++|...++.|=--|--.|++++|.+.|+...... | -|..+||-|=..++...+-++|+.-
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~--P-nd~~lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK--P-NDYLLWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC--C-chHHHHHHhhHHhcCCcccHHHHHH
Confidence 667788898888777755666667777667777899999999999987763 2 2777899999999999999999999
Q ss_pred HHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHhH---hCC----CCCCCCHHHHHHHHHHHHHcCCC
Q 047392 192 FYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQME---LPG----FRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~g~~p~~~--ty~~li~~~~~~g~~~~a~~~f~~M~---~~~----~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|++..+. .|+-+ =||.= -+|...|.+++|.+.|-+.. ..+ ..+.++...|.+|=.+++-.++.
T Consensus 487 Y~rALqL--qP~yVR~RyNlg-IS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 487 YNRALQL--QPGYVRVRYNLG-ISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred HHHHHhc--CCCeeeeehhhh-hhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 9999873 46542 24433 45788999999998886543 321 11234556787776666655543
No 191
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.53 E-value=4.7 Score=29.92 Aligned_cols=64 Identities=19% Similarity=0.185 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCC
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~ 235 (258)
-+..-++...+.|+-|+-.++..+..+. -.+++.-.-.+-.+|.+.|+..++-+++.+-.++|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 4556677777777777777777777642 246666667777778888888888888877777775
No 192
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.37 E-value=0.93 Score=26.19 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 206 AYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 206 ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
+|..+-..|.+.|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555666666666666666554
No 193
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.12 E-value=2.7 Score=35.60 Aligned_cols=85 Identities=16% Similarity=0.216 Sum_probs=61.7
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHH
Q 047392 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-FRCRPDVYAYNVVINALCRVGNFNK 222 (258)
Q Consensus 144 ~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~-~g~~p~~~ty~~li~~~~~~g~~~~ 222 (258)
..+++..+..++++.-..| +..+.+..-...-+.|+.++|.+=|++..+ .|+.|- ..||.-+..| +.|+.+.
T Consensus 124 se~Dl~g~rsLveQlp~en-----~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniALaHy-~~~qyas 196 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSEN-----EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALAHY-SSRQYAS 196 (459)
T ss_pred ccccCcchHHHHHhccCCC-----ccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHHHHH-hhhhHHH
Confidence 4566667777777765433 333444444445688999999999999887 566664 5688777655 5678999
Q ss_pred HHHHHHHhHhCCC
Q 047392 223 ARFLLEQMELPGF 235 (258)
Q Consensus 223 a~~~f~~M~~~~~ 235 (258)
|.++..|++++|+
T Consensus 197 ALk~iSEIieRG~ 209 (459)
T KOG4340|consen 197 ALKHISEIIERGI 209 (459)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998886
No 194
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.97 E-value=0.92 Score=24.98 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 047392 172 VTCLIKVLGEEGLVNEALATFYR 194 (258)
Q Consensus 172 ~~~li~~~~~~g~~~~a~~l~~~ 194 (258)
|+.|-..|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 195
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=88.90 E-value=21 Score=33.72 Aligned_cols=125 Identities=11% Similarity=0.003 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++-..+|++... .++....-|-....-+..+|++.+|..++.+..+.. |+ +...|-+-+..-....++++|..+
T Consensus 566 ~Esl~Allqkav~--~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pn-seeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 566 RESLEALLQKAVE--QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PN-SEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred HHHHHHHHHHHHH--hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CC-cHHHHHHHHHHhhccccHHHHHHH
Confidence 3444555555543 344445556566677778888888888888877753 32 566788888888889999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
|.+-.. ..|+...|.--+..---.++.++|.++.++-.+. -|+..-+-.|
T Consensus 641 lakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~----fp~f~Kl~lm 690 (913)
T KOG0495|consen 641 LAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS----FPDFHKLWLM 690 (913)
T ss_pred HHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh----CCchHHHHHH
Confidence 988876 3477777766666666678889999988887763 2776644333
No 196
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.90 E-value=13 Score=31.31 Aligned_cols=100 Identities=10% Similarity=0.008 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 047392 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193 (258)
Q Consensus 114 ~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~ 193 (258)
.-.|+.+-+...++-.++..+--.+|..+++.+++.+..++++.-... ..|..|...|...|+.....|+..-+.++.+
T Consensus 184 alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~-~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 184 ALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPN-SVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred hHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhccc-CCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 345565566666667788888999999999999999999999887654 3355577789999999999999998888887
Q ss_pred H-----HHhCCCCCCHHHHHHHHHHH
Q 047392 194 R-----MKQFRCRPDVYAYNVVINAL 214 (258)
Q Consensus 194 ~-----M~~~g~~p~~~ty~~li~~~ 214 (258)
+ .++.|+..+...-..|=..|
T Consensus 263 ~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 263 DGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred CCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 6 35566666665544444443
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=88.35 E-value=6.9 Score=30.07 Aligned_cols=88 Identities=11% Similarity=-0.044 Sum_probs=66.8
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 047392 142 FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221 (258)
Q Consensus 142 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~ 221 (258)
+-..|++++|..+|.-+.--++. |..-|-.|-.+|-..|++++|...|...-..+. -|...+=-+=.++...|+.+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~---n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY---NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 45689999999999988775432 344577788888888999999999998765432 23333444557888899999
Q ss_pred HHHHHHHHhHhC
Q 047392 222 KARFLLEQMELP 233 (258)
Q Consensus 222 ~a~~~f~~M~~~ 233 (258)
.|+..|+....+
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 999999988874
No 198
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.27 E-value=1.1 Score=24.58 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 206 AYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 206 ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
+|+.|=..|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57788899999999999999999854
No 199
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=87.67 E-value=16 Score=35.98 Aligned_cols=89 Identities=9% Similarity=0.009 Sum_probs=54.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 217 (258)
++.......++..+..+...|.+-+- +...+-.|-.||-+.|+.++|..+++++.+.. +-|....|-+-..|+..
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~----~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGE----NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhh----hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 33334444444444444444544332 23356667777788888888888888887755 44666666666666666
Q ss_pred CCHHHHHHHHHHhHh
Q 047392 218 GNFNKARFLLEQMEL 232 (258)
Q Consensus 218 g~~~~a~~~f~~M~~ 232 (258)
++++|++++.+-..
T Consensus 164 -dL~KA~~m~~KAV~ 177 (906)
T PRK14720 164 -DKEKAITYLKKAIY 177 (906)
T ss_pred -hHHHHHHHHHHHHH
Confidence 77776666655543
No 200
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=87.28 E-value=6.5 Score=32.29 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=46.7
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCcCHHHH---HHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 047392 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTV---TCLIKVLGEEGLVNEALATFYRMKQF-RCRPDVYAYNVVINALC 215 (258)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~---~~li~~~~~~g~~~~a~~l~~~M~~~-g~~p~~~ty~~li~~~~ 215 (258)
.+.+.|++++|.+.|+++...- |... ..- -.+..+|-+.++.++|...|++..+. .-.|+. -|...+.|.+
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~y--P~s~-~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~ 115 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRY--PFGP-YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLT 115 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHh
Confidence 3456889999999999998863 2222 222 24567788899999999999998763 223333 3444555544
No 201
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.88 E-value=5.1 Score=37.93 Aligned_cols=106 Identities=11% Similarity=0.000 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 047392 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193 (258)
Q Consensus 114 ~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~ 193 (258)
.-+++++....++|....-.+-+--+.-+...|+..+|.++-.+.+ .| |-..|=-=+.+++..+++++-+++-+
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ip--dKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IP--DKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----Cc--chhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 3445566666666666666677777888888888888888776653 23 66667777888888888888888777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 194 ~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
.++. ++-|--.+.+|.+.|+.++|..++.+..
T Consensus 740 skks------PIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 740 SKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred ccCC------CCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 7753 4556667778888888888888876654
No 202
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.41 E-value=12 Score=28.65 Aligned_cols=94 Identities=15% Similarity=0.085 Sum_probs=59.3
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 047392 140 IVFARGNNVKGLWDFLKEMSRRGNGEL-VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218 (258)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g 218 (258)
..-.+.++.+++..+++.|.-- .|. +...++...+ +.+.|++.+|+++|+++.+.+ |... |..-+-++|-..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p-~~kALlA~CL~~ 90 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFP-YAKALLALCLYA 90 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCCh-HHHHHHHHHHHH
Confidence 3345778999999999999875 342 3344555554 478899999999999998753 3333 444444555444
Q ss_pred CHHHHHHHH-HHhHhCCCCCCCCHH
Q 047392 219 NFNKARFLL-EQMELPGFRCPPDVY 242 (258)
Q Consensus 219 ~~~~a~~~f-~~M~~~~~~~~pd~~ 242 (258)
.-|..++.+ +++...+-. |+..
T Consensus 91 ~~D~~Wr~~A~evle~~~d--~~a~ 113 (160)
T PF09613_consen 91 LGDPSWRRYADEVLESGAD--PDAR 113 (160)
T ss_pred cCChHHHHHHHHHHhcCCC--hHHH
Confidence 444444444 556666622 5544
No 203
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.41 E-value=2.2 Score=23.69 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
+++.|-..|...|++++|.+++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45556666666666666666666543
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=86.40 E-value=8.7 Score=30.46 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=53.2
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH---
Q 047392 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF-RCRPDVYAYNVVINALCR--- 216 (258)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~-g~~p~~~ty~~li~~~~~--- 216 (258)
.+.+.|++++|.+.|+++..............-.+..++-+.|++++|...|++..+. .-.|. .-+...+.|.+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHHHHHHHHHHh
Confidence 3456788888888888888763221122234556778888888888888888887652 22222 223333333332
Q ss_pred ----------cCCHHHHHHHHHHhHhC
Q 047392 217 ----------VGNFNKARFLLEQMELP 233 (258)
Q Consensus 217 ----------~g~~~~a~~~f~~M~~~ 233 (258)
.+...+|...|+++...
T Consensus 93 ~~~~~~~~~D~~~~~~A~~~~~~li~~ 119 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIEEFEELIKR 119 (203)
T ss_dssp HHHHH-TT---HHHHHHHHHHHHHHHH
T ss_pred CccchhcccChHHHHHHHHHHHHHHHH
Confidence 12244677777777664
No 205
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=86.39 E-value=12 Score=27.93 Aligned_cols=64 Identities=8% Similarity=-0.022 Sum_probs=44.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~ 200 (258)
..+..+..+.+.|+-++-.+++.++.+.+ .+ +....-.+-.+|.+.|+..++.+++.+.-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~--~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EI--NPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CC--CHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34556677888888888888888886543 23 555677888899999999999999998888775
No 206
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.36 E-value=17 Score=32.03 Aligned_cols=105 Identities=13% Similarity=0.012 Sum_probs=58.2
Q ss_pred HHHHccCChHHHHHHHHHHHHc-----CCCC-------CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 047392 140 IVFARGNNVKGLWDFLKEMSRR-----GNGE-------LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207 (258)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~-----g~~~-------~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty 207 (258)
+.+.+.|++..|..-|+..... ++.+ ..-..+++.|.-+|.|.+++.+|++.-++....+ ++|+-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3456666666666665553222 0000 1122357777777788888888777777766543 2333221
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 208 ~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
=-==.++...|+++.|+..|+++.+ +.|+-..-+.=|.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k----~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK----LEPSNKAARAELI 332 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH----hCCCcHHHHHHHH
Confidence 1112455666777888888888776 3366554443333
No 207
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=85.47 E-value=2.3 Score=24.50 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQF 198 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~ 198 (258)
+|..+-..|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5777888888899999999999988874
No 208
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=85.40 E-value=17 Score=28.87 Aligned_cols=106 Identities=9% Similarity=-0.049 Sum_probs=78.8
Q ss_pred hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCC
Q 047392 125 FFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF---RCR 201 (258)
Q Consensus 125 ~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~---g~~ 201 (258)
.....|++..--.|-.++.+.|+..+|...|++-...-+-- |....-.+-.+....+++..|...++...+. +-.
T Consensus 82 ~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~--d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~ 159 (251)
T COG4700 82 ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAH--DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS 159 (251)
T ss_pred HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC--CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC
Confidence 33455777777778899999999999999999876543333 6556667777777789999999999987763 345
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 202 p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
||.. -.+-..+.-.|+..+|+.-|+.....-
T Consensus 160 pd~~--Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 160 PDGH--LLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred CCch--HHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 5543 345567788889999999998888743
No 209
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.20 E-value=8.7 Score=31.12 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=53.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ--FRCRPDVYAYNVVI 211 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~--~g~~p~~~ty~~li 211 (258)
|.+.-++.+.+.+.+.++....++-.+.. +- |.-+-..+++-||-.|++++|..-++-.-. ....+-..+|..+|
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Pt--da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PT--DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-Cc--cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 45666778888888888888887776663 22 455677888889999999988776665543 23445566677666
Q ss_pred HH
Q 047392 212 NA 213 (258)
Q Consensus 212 ~~ 213 (258)
.+
T Consensus 80 r~ 81 (273)
T COG4455 80 RC 81 (273)
T ss_pred HH
Confidence 54
No 210
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=85.03 E-value=17 Score=35.85 Aligned_cols=86 Identities=12% Similarity=0.097 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 209 (258)
-+...+-.+-.+|-+.|+.++|..+++++.+-. .-|...-|-+-..|+.. ++++|.+++.+..+.
T Consensus 114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----------- 178 (906)
T PRK14720 114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----------- 178 (906)
T ss_pred hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----------
Confidence 344577788899999999999999999999886 23777899999999999 999999999887653
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 210 VINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 210 li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
+...++..++.++|.++....
T Consensus 179 ----~i~~kq~~~~~e~W~k~~~~~ 199 (906)
T PRK14720 179 ----FIKKKQYVGIEEIWSKLVHYN 199 (906)
T ss_pred ----HHhhhcchHHHHHHHHHHhcC
Confidence 666667777777777777643
No 211
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=85.01 E-value=26 Score=31.87 Aligned_cols=119 Identities=10% Similarity=0.012 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHH-HHHh
Q 047392 112 INKATEFYHWVERFFHFFHN-----EVTCKEMGIVFAR----GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK-VLGE 181 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~-----~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~-~~~~ 181 (258)
=+.+++++.+-.+..++.-. ...|...+..++- ....+.|.++++++.++ -|+...|.-.-. .+..
T Consensus 204 R~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~----yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 204 RELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR----YPNSALFLFFEGRLERL 279 (468)
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH
Confidence 34666666665543333222 2356666666654 45678899999999887 236545544333 3566
Q ss_pred cCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 182 EGLVNEALATFYRMKQFR---CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g---~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.|++++|++.|++..... -+....+|--+.-+++-.+++++|.+.|.++.+..
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 799999999999765311 12233444555556778899999999999999754
No 212
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=84.92 E-value=1.1 Score=33.14 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=19.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH
Q 047392 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVL 179 (258)
Q Consensus 145 ~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~ 179 (258)
.|.-..|..+|..|.++|-+| | .|+.|+...
T Consensus 108 ygsk~DaY~VF~kML~~G~pP--d--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPP--D--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCC--c--cHHHHHHHh
Confidence 344555677777777777666 5 377766543
No 213
>PRK04841 transcriptional regulator MalT; Provisional
Probab=84.24 E-value=32 Score=33.85 Aligned_cols=122 Identities=10% Similarity=0.073 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHhhC---CC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-CcCHHHHHHHHHHHHh
Q 047392 111 GINKATEFYHWVERFF---HF-FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRR----GNGE-LVTTSTVTCLIKVLGE 181 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~---~~-~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~t~~~li~~~~~ 181 (258)
++++|...+++..... |- .....++..+-..+...|++++|.+.+++..+. |... ......+..+-..+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 3556666666654211 11 011234444556677788888888887765442 2111 0122334455556677
Q ss_pred cCChHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 182 EGLVNEALATFYRMKQF--RCRP--DVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~--g~~p--~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
.|++++|...+++.... ...+ ...++..+-......|+.++|.+.+.+...
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 79999998888886542 1112 233444455567788999999888887744
No 214
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.17 E-value=3.1 Score=23.03 Aligned_cols=29 Identities=31% Similarity=0.260 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 204 VYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 204 ~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..+++.|-..|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 45789999999999999999999998864
No 215
>PRK04841 transcriptional regulator MalT; Provisional
Probab=83.87 E-value=38 Score=33.32 Aligned_cols=121 Identities=10% Similarity=0.037 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC---CCcCHHHHHHHHHHHHhcC
Q 047392 111 GINKATEFYHWVERFFHFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG---ELVTTSTVTCLIKVLGEEG 183 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~---~~~~~~t~~~li~~~~~~g 183 (258)
++++|...+++......- .+ ...++.+-..+...|++++|...+++.....-. +..-..+++.+-..+...|
T Consensus 467 ~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 467 DPEEAERLAELALAELPL-TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 467888888876532111 11 234455666677899999999998887653111 1111234556666788899
Q ss_pred ChHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 184 LVNEALATFYRMKQ----FRCR--P-DVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 184 ~~~~a~~l~~~M~~----~g~~--p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
++++|.+.+++... .|.. + ....+..+-..+...|++++|...+.+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 99999999888654 2321 1 223344455566778999999999988755
No 216
>PLN02789 farnesyltranstransferase
Probab=83.67 E-value=28 Score=29.97 Aligned_cols=133 Identities=11% Similarity=-0.010 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCC--hHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN--VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
.+++++.++++... -+.+..+|+----.+.+.|+ .+++.++++++.+... -|.++|+-.-..+.+.|++++++
T Consensus 88 l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp---kNy~AW~~R~w~l~~l~~~~eeL 162 (320)
T PLN02789 88 LEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA---KNYHAWSHRQWVLRTLGGWEDEL 162 (320)
T ss_pred HHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHhhhHHHHH
Confidence 46888888887643 22344455543333444454 3667888888887642 27778998888888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHc---CC----HHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRV---GN----FNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~---g~----~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
+.++++.+.+. -|...|+-.-..+.+. |. .+++.++..+++...- =|...|+.+-..+..
T Consensus 163 ~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P---~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 163 EYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP---RNESPWRYLRGLFKD 229 (320)
T ss_pred HHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC---CCcCHHHHHHHHHhc
Confidence 99999987653 4556666655555443 22 2456666666665431 233456655555554
No 217
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=83.43 E-value=24 Score=32.15 Aligned_cols=74 Identities=9% Similarity=0.133 Sum_probs=53.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHH
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC-RPDVYAYNVVIN 212 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~-~p~~~ty~~li~ 212 (258)
|-.++.+.|+.++|.+.|.+|.+.. +..-+.-+...||.++...+...++..++.+-.+... +.-..+|+..+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 4455668899999999999997653 2222334688899999999999999999999865332 223466777553
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.64 E-value=21 Score=29.93 Aligned_cols=99 Identities=10% Similarity=0.005 Sum_probs=77.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~ 213 (258)
..++++..+--.|.+.-....+++.++..-+ .+.+.-+.|...-...||.+.|...|+..++..-..|..+++.++..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e--~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPE--QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCc--ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 4567788887888888889999999886533 36667777888888889999999999998876666788888777754
Q ss_pred -----HHHcCCHHHHHHHHHHhHhCC
Q 047392 214 -----LCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 214 -----~~~~g~~~~a~~~f~~M~~~~ 234 (258)
|.-..++-.|...|.+.....
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D 282 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD 282 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC
Confidence 334677888999998887754
No 219
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.47 E-value=6.6 Score=33.56 Aligned_cols=83 Identities=10% Similarity=-0.049 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 112 INKATEFYHWVERFF--HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~--~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
++++...+-+.+... -+.|+...|. .++-| -.-+.+++..++..=+..|+-| |.+|++.||+.+.+.+++.+|.
T Consensus 80 idd~~~~LyKlRhs~~a~~~~~~~~~~-~irll-lky~pq~~i~~l~npIqYGiF~--dqf~~c~l~D~flk~~n~~~aa 155 (418)
T KOG4570|consen 80 IDDAEYYLYKLRHSPNAWYLRNWTIHT-WIRLL-LKYDPQKAIYTLVNPIQYGIFP--DQFTFCLLMDSFLKKENYKDAA 155 (418)
T ss_pred hhHHHHHHHHHhcCcchhhhccccHHH-HHHHH-HccChHHHHHHHhCcchhcccc--chhhHHHHHHHHHhcccHHHHH
Confidence 667777776665431 2334433333 22222 2335668888888888888877 9999999999999999999988
Q ss_pred HHHHHHHhC
Q 047392 190 ATFYRMKQF 198 (258)
Q Consensus 190 ~l~~~M~~~ 198 (258)
.+..+|...
T Consensus 156 ~vvt~~~~q 164 (418)
T KOG4570|consen 156 SVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHH
Confidence 888887653
No 220
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=82.43 E-value=39 Score=30.84 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH--HHHHHHH
Q 047392 173 TCLIKVLGEEGLVNEALATFYRMKQF-RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY--TYTILIS 249 (258)
Q Consensus 173 ~~li~~~~~~g~~~~a~~l~~~M~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~--ty~~li~ 249 (258)
..|-.+.-+.|+.++|.+.|.+|.+. ...-+......||.++...+...++..++.+--+... |... +|+..+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l---pkSAti~YTaALL 339 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL---PKSATICYTAALL 339 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC---CchHHHHHHHHHH
Confidence 34666667889999999999999753 2222445677899999999999999999999765432 4444 4776553
No 221
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.17 E-value=17 Score=28.22 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV--YAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
.+..+-+-|++.|+.++|.+.|.++.+....+.. ..+-.+|....-.|++..+....++...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5888999999999999999999999987555544 3467788888889999999888777654
No 222
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=82.02 E-value=20 Score=27.30 Aligned_cols=81 Identities=5% Similarity=-0.066 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVT-CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~-y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
.+++|..+|+-... +.|.... |-.|-.++-..|++++|.+.|.....-.. - |...+-.+=.++.+.|+.+.|.
T Consensus 50 ~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-d--dp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 50 EFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-D--APQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred CHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-C--CchHHHHHHHHHHHcCCHHHHH
Confidence 37799999999873 2355443 44466666678999999999999877652 2 4456777888999999999999
Q ss_pred HHHHHHHh
Q 047392 190 ATFYRMKQ 197 (258)
Q Consensus 190 ~l~~~M~~ 197 (258)
+-|+....
T Consensus 124 ~aF~~Ai~ 131 (157)
T PRK15363 124 KALKAVVR 131 (157)
T ss_pred HHHHHHHH
Confidence 99998765
No 223
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.78 E-value=34 Score=29.72 Aligned_cols=113 Identities=13% Similarity=0.047 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC--HHHHHHHHHHHHhcCChHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT--TSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~t~~~li~~~~~~g~~~~a~ 189 (258)
..+|-..++++.+ .++.|...++-.=.+|...|+.+.-...+++.... -.++.. +.+-...--|+-.+|-+++|+
T Consensus 119 ~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 119 HHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 4466677777764 56778888888888888888888888888777654 122111 222222333445678888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~ 228 (258)
+.-++-.+-+ +.|.-.-.+.-+.+--.|+..++.+++.
T Consensus 196 k~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 196 KQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 8777765532 2233333333333334444444444433
No 224
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=81.68 E-value=40 Score=30.48 Aligned_cols=135 Identities=14% Similarity=0.047 Sum_probs=95.3
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
.-+++.|..+|-+..+..-..+++..|+++|.-+| .|+...|..+|+-=... + |+..+. -+--+.-+.+-++-+.|
T Consensus 410 ~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f-~d~~~y-~~kyl~fLi~inde~na 485 (660)
T COG5107 410 KRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-F-PDSTLY-KEKYLLFLIRINDEENA 485 (660)
T ss_pred HhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-C-CCchHH-HHHHHHHHHHhCcHHHH
Confidence 34478999999999854337899999999999988 56677788888752222 1 222222 34456667888999999
Q ss_pred HHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHH
Q 047392 189 LATFYRMKQFRCRPD--VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~ 252 (258)
..+|+.-... +.-+ -..|-.+|+.=..-|++..+..+=++|.. +.|-..+-.+..+-|.
T Consensus 486 raLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e----~~pQen~~evF~Sry~ 546 (660)
T COG5107 486 RALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE----LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH----HcCcHhHHHHHHHHHh
Confidence 9999944321 1112 46799999999999999988888888876 3366666666665554
No 225
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.41 E-value=16 Score=25.52 Aligned_cols=33 Identities=9% Similarity=-0.010 Sum_probs=16.6
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 047392 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMS 159 (258)
Q Consensus 127 ~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 159 (258)
.+.|+.....+.+++|-|.+++..|.++|+-.+
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555555555555555555555444
No 226
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=81.29 E-value=7 Score=23.20 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=14.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
+.|-+.++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3344444444444444444444444444333
No 227
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=81.08 E-value=33 Score=29.03 Aligned_cols=109 Identities=8% Similarity=-0.103 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 112 INKATEFYHWVERFFHF---FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~---~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
...|.+.|+.......- ..+...-..++....+.|..++...+++...... +......++.+.+-..+.+..
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~-----~~~~k~~~l~aLa~~~d~~~~ 220 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNST-----SPEEKRRLLSALACSPDPELL 220 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTS-----THHHHHHHHHHHTT-S-HHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccC-----CHHHHHHHHHhhhccCCHHHH
Confidence 46888999988753222 3455566677888888888776556665555442 566789999999999999999
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCH--HHHHHHH
Q 047392 189 LATFYRMKQFR-CRPDVYAYNVVINALCRVGNF--NKARFLL 227 (258)
Q Consensus 189 ~~l~~~M~~~g-~~p~~~ty~~li~~~~~~g~~--~~a~~~f 227 (258)
.++++.....+ +++.. ...++.++...+.. +.+++++
T Consensus 221 ~~~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~ 260 (324)
T PF11838_consen 221 KRLLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFF 260 (324)
T ss_dssp HHHHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHH
T ss_pred HHHHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHH
Confidence 99999988854 54444 34555566644443 6666664
No 228
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.39 E-value=18 Score=25.50 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047392 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227 (258)
Q Consensus 148 ~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f 227 (258)
.++|..+-+.+...+- ....+--+-+..+...|++++|..+.+.+ +.||.+.|-+|-. .|.|..+.+..-+
T Consensus 21 HqEA~tIAdwL~~~~~---~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 21 HQEANTIADWLHLKGE---SEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 5677777777666542 12333344556678889999999988877 5799999866533 4788888888888
Q ss_pred HHhHhCCCCCCCCHHHHHH
Q 047392 228 EQMELPGFRCPPDVYTYTI 246 (258)
Q Consensus 228 ~~M~~~~~~~~pd~~ty~~ 246 (258)
.+|..+|- |...+|-.
T Consensus 92 ~rla~sg~---p~lq~Faa 107 (115)
T TIGR02508 92 NRLAASGD---PRLQTFVA 107 (115)
T ss_pred HHHHhCCC---HHHHHHHH
Confidence 89988774 66655543
No 229
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=80.36 E-value=22 Score=26.51 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=69.4
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHH---HHHH
Q 047392 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-FRCRPDVYAYNVVIN---ALCR 216 (258)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~-~g~~p~~~ty~~li~---~~~~ 216 (258)
+++..|+++.|.+.|.+-..- .+- +...||.--.++--.|+.++|++=+++-.+ .|-+ +-....+.+. .|-.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APE--RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-ccc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHH
Confidence 467889999999999887664 222 444699999999999999999988888766 3433 2222222221 1334
Q ss_pred cCCHHHHHHHHHHhHhCCCC--------CCCCHHHHHHHHH
Q 047392 217 VGNFNKARFLLEQMELPGFR--------CPPDVYTYTILIS 249 (258)
Q Consensus 217 ~g~~~~a~~~f~~M~~~~~~--------~~pd~~ty~~li~ 249 (258)
.|+-+.|..=|+.-.+.|-+ +.|-...+|-|+.
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa 168 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLA 168 (175)
T ss_pred hCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHH
Confidence 67777777766655544421 3477777887774
No 230
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=79.96 E-value=5.5 Score=21.08 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 206 AYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 206 ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
+|..+-..|...|++++|...|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444555555555555555555544
No 231
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=79.84 E-value=44 Score=29.71 Aligned_cols=149 Identities=13% Similarity=0.063 Sum_probs=90.6
Q ss_pred hhhhHHHHHHHHHHHHhCccCCCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH--HccCChHHHHHHHHHH
Q 047392 81 RILKKEADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVF--ARGNNVKGLWDFLKEM 158 (258)
Q Consensus 81 ~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~--~~~g~~~~a~~~~~~m 158 (258)
+.+....+.--|..+..|+...+--. -..|.++-.+-.+ -+.-|....--|+.+- --.|+.+.|.+-|+-|
T Consensus 74 Ryfr~rKRdrgyqALStGliAagAGd-----a~lARkmt~~~~~--llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAM 146 (531)
T COG3898 74 RYFRERKRDRGYQALSTGLIAAGAGD-----ASLARKMTARASK--LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAM 146 (531)
T ss_pred HHHHHHHhhhHHHHHhhhhhhhccCc-----hHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 33334444556667777765444333 2256665544432 1223333333344332 2469999999999999
Q ss_pred HHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCC
Q 047392 159 SRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237 (258)
Q Consensus 159 ~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~ 237 (258)
.+. |.....-...|.-.--+.|+-+.|...-++--.. -| -...+.+.+...|..|+|+.|.++.+.-+...+ +
T Consensus 147 l~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-i 220 (531)
T COG3898 147 LDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV-I 220 (531)
T ss_pred hcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-h
Confidence 765 3222223444555556778888887777665432 23 346788999999999999999999988776655 4
Q ss_pred CCCHH
Q 047392 238 PPDVY 242 (258)
Q Consensus 238 ~pd~~ 242 (258)
++|..
T Consensus 221 e~~~a 225 (531)
T COG3898 221 EKDVA 225 (531)
T ss_pred chhhH
Confidence 56654
No 232
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.80 E-value=20 Score=25.24 Aligned_cols=30 Identities=7% Similarity=0.055 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
+..+..+.+.+|-|..++.-|.++|+-.+.
T Consensus 44 ~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 44 EPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444556666666666666666666655553
No 233
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=78.65 E-value=51 Score=29.81 Aligned_cols=85 Identities=13% Similarity=0.095 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 047392 129 FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208 (258)
Q Consensus 129 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~ 208 (258)
..+...|..|-....+.|+++-|++.|.+.. | |..|+--|.-.|+.+.-.++.+.-...|- +|
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d---~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n 406 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------D---FSGLLLLYSSTGDREKLSKLAKIAEERGD------IN 406 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------C---ccccHHHHHHhCCHHHHHHHHHHHHHccC------HH
Confidence 3578899999999999999999999997742 4 88999999999999998888888777652 77
Q ss_pred HHHHHHHHcCCHHHHHHHHHHh
Q 047392 209 VVINALCRVGNFNKARFLLEQM 230 (258)
Q Consensus 209 ~li~~~~~~g~~~~a~~~f~~M 230 (258)
..+.++.-.|+.++..+++.+-
T Consensus 407 ~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 407 IAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHc
Confidence 8888888888988888887654
No 234
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.59 E-value=13 Score=29.11 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 200 ~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..|+..+|..++..+...|+.++|.++.+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666666666666666666666666665
No 235
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=78.02 E-value=53 Score=29.70 Aligned_cols=137 Identities=16% Similarity=0.157 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH--HhcCCh
Q 047392 112 INKATEFYHWVERFFHFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVL--GEEGLV 185 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~--~~~g~~ 185 (258)
+.+|.++|.++-++..-.|. .+..+.+|++|.. .+++.....+.+..+.. +- . .|-.|..+. -+.|++
T Consensus 22 ~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~-~~--s--~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 22 FQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF-GK--S--AYLPLFKALVAYKQKEY 95 (549)
T ss_pred hhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc-CC--c--hHHHHHHHHHHHHhhhH
Confidence 45777777776543221121 3345677788774 45777777777766552 11 1 366666653 467788
Q ss_pred HHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC--CCCCHHHHHHHHH
Q 047392 186 NEALATFYRMKQF--RCRP------------DVYAYNVVINALCRVGNFNKARFLLEQMELPGFR--CPPDVYTYTILIS 249 (258)
Q Consensus 186 ~~a~~l~~~M~~~--g~~p------------~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~--~~pd~~ty~~li~ 249 (258)
++|.+.+..=.+. +..| |-.-=++.++++...|++.+++.+.++|...=++ +.-|..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 8888887776553 3322 2222267778888899999999998888754221 3367888888665
Q ss_pred HHHHc
Q 047392 250 SYCKY 254 (258)
Q Consensus 250 ~~~~~ 254 (258)
.++|+
T Consensus 176 mlsrS 180 (549)
T PF07079_consen 176 MLSRS 180 (549)
T ss_pred HHhHH
Confidence 55543
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=77.83 E-value=38 Score=29.81 Aligned_cols=76 Identities=18% Similarity=0.109 Sum_probs=42.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-C-CCC-HHHHHHHHHHHHH---cCCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 174 CLIKVLGEEGLVNEALATFYRMKQFR-C-RPD-VYAYNVVINALCR---VGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 174 ~li~~~~~~g~~~~a~~l~~~M~~~g-~-~p~-~~ty~~li~~~~~---~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
.|+-+|-...+++...++.+.|...- + .++ ...---..-++-| .|+-++|.+++..+...... ++..||..+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~--~~~d~~gL~ 223 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN--PDPDTLGLL 223 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC--CChHHHHHH
Confidence 44445777777888888888777631 1 011 1110111223334 67777888887775554433 666666655
Q ss_pred HHHH
Q 047392 248 ISSY 251 (258)
Q Consensus 248 i~~~ 251 (258)
=..|
T Consensus 224 GRIy 227 (374)
T PF13281_consen 224 GRIY 227 (374)
T ss_pred HHHH
Confidence 4443
No 237
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=77.65 E-value=2.4 Score=31.28 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHH
Q 047392 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (258)
Q Consensus 218 g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~ 250 (258)
|.-.+|..+|.+|..+|-+ || .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~p--Pd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNP--PD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCC--Cc--cHHHHHHH
Confidence 4444566666666666654 55 55555544
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=77.52 E-value=25 Score=25.68 Aligned_cols=87 Identities=14% Similarity=0.154 Sum_probs=57.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~ 214 (258)
...+|..+...+..+....+++.+...+. .+...+|.+|..|++.+. .+..+.+.. . .+......++..|
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~---~~~~~~~~li~ly~~~~~-~~ll~~l~~--~----~~~yd~~~~~~~c 79 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS---ENPALQTKLIELYAKYDP-QKEIERLDN--K----SNHYDIEKVGKLC 79 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc---cchhHHHHHHHHHHHHCH-HHHHHHHHh--c----cccCCHHHHHHHH
Confidence 35677888878888899999998888762 355679999999998753 333444442 1 2333334466666
Q ss_pred HHcCCHHHHHHHHHHhH
Q 047392 215 CRVGNFNKARFLLEQME 231 (258)
Q Consensus 215 ~~~g~~~~a~~~f~~M~ 231 (258)
-+.+.++++..++.++.
T Consensus 80 ~~~~l~~~~~~l~~k~~ 96 (140)
T smart00299 80 EKAKLYEEAVELYKKDG 96 (140)
T ss_pred HHcCcHHHHHHHHHhhc
Confidence 66666666666666653
No 239
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.45 E-value=40 Score=28.02 Aligned_cols=117 Identities=15% Similarity=0.020 Sum_probs=64.4
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
...++|+++++...+.. +-|.++|..=|...-..|+-.+|.+-+.+..+. +.- |...|--|-..|...|++++|.
T Consensus 100 ~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~--D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMN--DQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred hchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcC--cHHHHHHHHHHHHhHhHHHHHH
Confidence 33666666666665332 445556655555555556555666666665554 333 5556777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHH-HHHHHH---HHHcCCHHHHHHHHHHhHhC
Q 047392 190 ATFYRMKQFRCRPDVYAY-NVVINA---LCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty-~~li~~---~~~~g~~~~a~~~f~~M~~~ 233 (258)
-.++||.-. .|....| ..+-+. -+...+.+.|.++|.+-.+.
T Consensus 175 fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 175 FCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 777776642 2433322 222222 22233455666666666653
No 240
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.67 E-value=5.4 Score=23.29 Aligned_cols=25 Identities=16% Similarity=0.036 Sum_probs=17.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 047392 175 LIKVLGEEGLVNEALATFYRMKQFR 199 (258)
Q Consensus 175 li~~~~~~g~~~~a~~l~~~M~~~g 199 (258)
|-.+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4567777777777777777776543
No 241
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=76.30 E-value=57 Score=30.74 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=34.2
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047392 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRC 200 (258)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~ 200 (258)
+.+..+|++++|..++++-.+-. .+|...=+--.+-..+..++++|.++.......|.
T Consensus 413 RI~kH~G~l~eAa~~l~ea~elD---~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 413 RIFKHAGLLDEAAAWLDEAQELD---TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHhcCChHHHHHHHHHHHhcc---chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 55566677777777777665543 22432222344445566777777777777666554
No 242
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.21 E-value=31 Score=26.09 Aligned_cols=84 Identities=11% Similarity=0.037 Sum_probs=53.1
Q ss_pred ccCChHHHHHHHHHHHHcCCCCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047392 144 RGNNVKGLWDFLKEMSRRGNGEL-VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222 (258)
Q Consensus 144 ~~g~~~~a~~~~~~m~~~g~~~~-~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~ 222 (258)
+.++++++..+++.|.--. |. +...+|-..|. .+.|++++|.++|++..+.+- ...|..-+.++|-...-|.
T Consensus 22 ~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~--i~rg~w~eA~rvlr~l~~~~~---~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR--PNLKELDMFDGWLL--IARGNYDEAARILRELLSSAG---APPYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC--CCccccchhHHHHH--HHcCCHHHHHHHHHhhhccCC---CchHHHHHHHHHHHhcCCh
Confidence 4788888888888886642 32 23335655554 678899999999999987542 2246666666665544444
Q ss_pred HHHHH-HHhHhCC
Q 047392 223 ARFLL-EQMELPG 234 (258)
Q Consensus 223 a~~~f-~~M~~~~ 234 (258)
.++.+ +++...+
T Consensus 95 ~Wr~~A~~~le~~ 107 (153)
T TIGR02561 95 EWHVHADEVLARD 107 (153)
T ss_pred HHHHHHHHHHHhC
Confidence 44443 3444444
No 243
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.08 E-value=33 Score=26.27 Aligned_cols=105 Identities=10% Similarity=0.056 Sum_probs=59.6
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHH-HHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMG-IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
...+++..++.-+.. +.|.......+- .-+.+.|++.+|..+|+++.+.+. .. -|..-+.++|-...-|..
T Consensus 24 ~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~----~~-p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 24 GDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAP----GF-PYAKALLALCLYALGDPS 95 (160)
T ss_pred CChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC----CC-hHHHHHHHHHHHHcCChH
Confidence 357788888887763 446554433222 124568899999999999877642 11 244445555544444444
Q ss_pred HHHH-HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047392 189 LATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225 (258)
Q Consensus 189 ~~l~-~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 225 (258)
++.+ +++.+.+-.|+.. .++..+-...+...|..
T Consensus 96 Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 96 WRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence 4444 4466655444433 45566655555544443
No 244
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.90 E-value=24 Score=28.73 Aligned_cols=66 Identities=9% Similarity=-0.057 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV 178 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~ 178 (258)
++.+|+.+.++-.+. -+-|..+-..+++-||-.|++++|..-++-.-.-.-.-.+-..+|..+|.|
T Consensus 16 sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 16 SLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred cHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 366777766554421 233455566788899999999999877666544332223355577777765
No 245
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=75.14 E-value=27 Score=27.65 Aligned_cols=60 Identities=15% Similarity=0.050 Sum_probs=43.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 175 LIKVLGEEGLVNEALATFYRMKQF--RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 175 li~~~~~~g~~~~a~~l~~~M~~~--g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.-..+...|++++|.+.|+++... +-+--....-.+..++-+.|+.+.|...|++....-
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 334567889999999999999863 111222344567788999999999999999988754
No 246
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=74.44 E-value=14 Score=21.81 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=29.5
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 211 i~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
+-...+.|-++++..++++|.+.|+. -+...|+.+++
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~--is~~l~~~~L~ 45 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFR--ISPKLIEEILR 45 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcc--cCHHHHHHHHH
Confidence 34456788889999999999999976 77777777765
No 247
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.87 E-value=44 Score=26.67 Aligned_cols=73 Identities=7% Similarity=0.014 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047392 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ---FRCRPDVYAYNVVINALCRVGNFNKAR 224 (258)
Q Consensus 149 ~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~---~g~~p~~~ty~~li~~~~~~g~~~~a~ 224 (258)
++|.+.|-++...+.-- ++ .--.-+..|--..+.++|..++.+..+ .+-.+|+..+.+|.+.+-+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~--t~-elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELE--TA-ELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCC--CH-HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34666666665554222 22 223333333335566666666666554 233566666666666666666666653
No 248
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=73.02 E-value=9 Score=30.32 Aligned_cols=57 Identities=9% Similarity=0.155 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047392 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRP--------------DVYAYNVVINALCRVGNFNKARFLLEQ 229 (258)
Q Consensus 173 ~~li~~~~~~g~~~~a~~l~~~M~~~g~~p--------------~~~ty~~li~~~~~~g~~~~a~~~f~~ 229 (258)
-+++..|-+.-++.++.++++.|-+..+.. --..-|.-...|.+.|.+|.|..++.+
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 467888899999999999999987654332 224568888999999999999999873
No 249
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.87 E-value=7.3 Score=19.52 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=8.1
Q ss_pred HHHHHHhcCChHHHHHHH
Q 047392 175 LIKVLGEEGLVNEALATF 192 (258)
Q Consensus 175 li~~~~~~g~~~~a~~l~ 192 (258)
+-..+...|+.++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444444444444444
No 250
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=72.78 E-value=31 Score=24.44 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 172 VTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 172 ~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
|..|+.-|-..|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 89999999999999999999998876
No 251
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=72.08 E-value=8.6 Score=32.53 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 047392 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207 (258)
Q Consensus 172 ~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty 207 (258)
||.-|..-.+.||+++|+.+++|-++.|+.-=..||
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 556777777777777777777777776654433333
No 252
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.03 E-value=19 Score=34.35 Aligned_cols=84 Identities=17% Similarity=0.063 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 209 (258)
||-.-|-.=+.+++..+++++-+++-..++. | .-|-..+.+|.+.|+.++|.+.+.+... .. -
T Consensus 713 pdKr~~wLk~~aLa~~~kweeLekfAkskks----P----IGy~PFVe~c~~~~n~~EA~KYiprv~~------l~---e 775 (829)
T KOG2280|consen 713 PDKRLWWLKLTALADIKKWEELEKFAKSKKS----P----IGYLPFVEACLKQGNKDEAKKYIPRVGG------LQ---E 775 (829)
T ss_pred cchhhHHHHHHHHHhhhhHHHHHHHHhccCC----C----CCchhHHHHHHhcccHHHHhhhhhccCC------hH---H
Confidence 8888888899999999999988777766532 2 2488899999999999999999887632 11 5
Q ss_pred HHHHHHHcCCHHHHHHHHHHh
Q 047392 210 VINALCRVGNFNKARFLLEQM 230 (258)
Q Consensus 210 li~~~~~~g~~~~a~~~f~~M 230 (258)
...+|.+.|++.+|.++--+=
T Consensus 776 kv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 776 KVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHHHHHhccHHHHHHHHHHh
Confidence 778899999998888775443
No 253
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=71.94 E-value=62 Score=29.28 Aligned_cols=93 Identities=15% Similarity=0.140 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHc-------C--------CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRR-------G--------NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~-------g--------~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
.-.+.++.-+-+.|..+.|+.+..+-..+ | .....+...|..|-+...+.|+++-|++.|++..+
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 34788888888888888888775443222 2 11122566788888888888888888888887764
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 198 ~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
|..|+--|.-.|+.+...++.+.-...|
T Consensus 376 ---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 376 ---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp ---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred ---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 5667777777777777777776666555
No 254
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=71.89 E-value=49 Score=26.39 Aligned_cols=82 Identities=16% Similarity=-0.050 Sum_probs=60.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCC-CCCHHHHHHHHHHHHH
Q 047392 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC-PPDVYTYTILISSYCK 253 (258)
Q Consensus 175 li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~-~pd~~ty~~li~~~~~ 253 (258)
+-.-..+.|+ ++|.+.|-.+...+.--|+...-.|-.-|. ..+.++|..++.+..+..-.- .+|...+.+|.+.|-+
T Consensus 113 lYy~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 113 LYYHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 3344555555 678999999998887666666655555555 679999999998886532111 4889999999999999
Q ss_pred cCCCC
Q 047392 254 YGMQT 258 (258)
Q Consensus 254 ~g~~~ 258 (258)
.|+.+
T Consensus 191 ~~~~e 195 (203)
T PF11207_consen 191 LKNYE 195 (203)
T ss_pred hcchh
Confidence 88764
No 255
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.70 E-value=41 Score=25.45 Aligned_cols=74 Identities=20% Similarity=0.303 Sum_probs=50.0
Q ss_pred HHHHHHHHH---HhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHH
Q 047392 171 TVTCLIKVL---GEEGLVNEALATFYRMKQFRCRPDV---YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244 (258)
Q Consensus 171 t~~~li~~~---~~~g~~~~a~~l~~~M~~~g~~p~~---~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty 244 (258)
+-+.||+.. ...++.+++..+++.|... .|+. .+|-..| +.++|++++|.++|.+..+.+ +.. .|
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~----~~~-p~ 79 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA----GAP-PY 79 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC----CCc-hH
Confidence 344444443 3478999999999999863 4544 3443333 468999999999999999876 332 45
Q ss_pred HHHHHHHHH
Q 047392 245 TILISSYCK 253 (258)
Q Consensus 245 ~~li~~~~~ 253 (258)
..-+.++|-
T Consensus 80 ~kAL~A~CL 88 (153)
T TIGR02561 80 GKALLALCL 88 (153)
T ss_pred HHHHHHHHH
Confidence 555555553
No 256
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=71.50 E-value=57 Score=27.00 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-FRCRPDVYAYN 208 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~-~g~~p~~~ty~ 208 (258)
|-..-|+.-+..+ +.|++++|.+.|+.+..+...-.-...+--.++.++-+.++.++|+..+++... .+-.||. -|-
T Consensus 33 p~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~ 110 (254)
T COG4105 33 PASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYA 110 (254)
T ss_pred CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHH
Confidence 3344455444443 589999999999999987432222455667788889999999999999999765 5555654 355
Q ss_pred HHHHHHHH
Q 047392 209 VVINALCR 216 (258)
Q Consensus 209 ~li~~~~~ 216 (258)
.-|.|++.
T Consensus 111 ~YlkgLs~ 118 (254)
T COG4105 111 YYLKGLSY 118 (254)
T ss_pred HHHHHHHH
Confidence 55556554
No 257
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.35 E-value=59 Score=27.09 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 113 NKATEFYHWVERFFHFFHNEVTCKEMGIV-FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~~~~y~~li~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+.|...++++..++ |...---.|=.. +-..|+.++|.+.++.+.+.. ..|.++|--=|...-..|+--+|++-
T Consensus 69 ~lAq~C~~~L~~~f---p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd---pt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 69 DLAQKCINQLRDRF---PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD---PTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred HHHHHHHHHHHHhC---CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC---cchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 47888888887664 443222212111 223588999999999999886 23666777666666666776678777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
+.+..+. +.-|...|.-+-..|...|+++.|.-.++||.-..
T Consensus 143 ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 143 LNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 7776553 56799999999999999999999999999998743
No 258
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=71.30 E-value=36 Score=26.76 Aligned_cols=68 Identities=12% Similarity=0.052 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHH------HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC
Q 047392 112 INKATEFYHWVERFFHFFHNEV------TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL 184 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~------~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~ 184 (258)
++.|+.+++.+.++...+-+.. .=-..+-.|.+.|.+++|.++++...... +..+...-+....+.++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~-----~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDP-----ESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCC-----CchhHHHHHHHHHHccc
Confidence 7888888888886644321111 11234456778888888888888776532 44444555555554444
No 259
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=71.16 E-value=60 Score=27.11 Aligned_cols=121 Identities=11% Similarity=0.063 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---cCH--HHHHHHHHHHHh
Q 047392 111 GINKATEFYHWVERFFHFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL---VTT--STVTCLIKVLGE 181 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~--~t~~~li~~~~~ 181 (258)
+++.|++.|++..+-+.-.-+ ..++.-+...+.+.|++++|.++|++....-.... .++ ..++++| ++..
T Consensus 130 d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~ 208 (282)
T PF14938_consen 130 DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLA 208 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHH
Confidence 467888888776532211112 33556677889999999999999999887633221 122 2234444 6677
Q ss_pred cCChHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHc--CCHHHHHHHHHHhHh
Q 047392 182 EGLVNEALATFYRMKQF--RCRPD--VYAYNVVINALCRV--GNFNKARFLLEQMEL 232 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~--g~~p~--~~ty~~li~~~~~~--g~~~~a~~~f~~M~~ 232 (258)
.||.-.|.+.|++.... ++..+ ...-..||.+|=.. ..+++|..-|+.+..
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 89999999999998753 44333 33445556665432 346667777776654
No 260
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.11 E-value=4.9 Score=20.89 Aligned_cols=21 Identities=10% Similarity=0.322 Sum_probs=12.0
Q ss_pred HHHHcCCHHHHHHHHHHhHhC
Q 047392 213 ALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 213 ~~~~~g~~~~a~~~f~~M~~~ 233 (258)
++.+.|+.++|.+.|+++...
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHH
Confidence 444556666666666666543
No 261
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.03 E-value=28 Score=27.24 Aligned_cols=60 Identities=12% Similarity=0.020 Sum_probs=39.9
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHc-CCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047392 137 EMGIVFARGNNVKGLWDFLKEMSRR-GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198 (258)
Q Consensus 137 ~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~ 198 (258)
..+.......+.+......+...+. ...| +..+|..++..+...|+.++|.++.+++...
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P--~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRP--DPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333333555555444444443332 1234 6668999999999999999999999999763
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.53 E-value=61 Score=26.92 Aligned_cols=153 Identities=11% Similarity=0.016 Sum_probs=81.7
Q ss_pred hCccCCCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH---HHHcCCCCCcCHHHHH
Q 047392 97 LGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKE---MSRRGNGELVTTSTVT 173 (258)
Q Consensus 97 ~g~~~~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~---m~~~g~~~~~~~~t~~ 173 (258)
.++..+.+++......+.|.-+.++|.+- .--+.-|+-....|..+|..+.|-.-+++ |.+. ..|+--...|.
T Consensus 59 ~~yEnnrslfhAAKayEqaamLake~~kl---sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~len-v~Pd~AlqlYq 134 (308)
T KOG1585|consen 59 KGYENNRSLFHAAKAYEQAAMLAKELSKL---SEVVDLYEKASELYVECGSPDTAAMALEKAAKALEN-VKPDDALQLYQ 134 (308)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc-CCHHHHHHHHH
Confidence 35666667775555566666666666531 12234567777788888877655444433 3333 33433333344
Q ss_pred HHHH--------------------HHHhcCChHHHHHHHHHHHhC--CC--CCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 047392 174 CLIK--------------------VLGEEGLVNEALATFYRMKQF--RC--RPDV-YAYNVVINALCRVGNFNKARFLLE 228 (258)
Q Consensus 174 ~li~--------------------~~~~~g~~~~a~~l~~~M~~~--g~--~p~~-~ty~~li~~~~~~g~~~~a~~~f~ 228 (258)
--+. .+.+..++++|-.-|.+-... .+ -++. ..|-+.|-.+....++..|+..|+
T Consensus 135 ralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 135 RALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR 214 (308)
T ss_pred HHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 4333 344444444443333322110 00 1111 224455556666778999999998
Q ss_pred HhHhCCCCCC-CCHHHHHHHHHHHHH
Q 047392 229 QMELPGFRCP-PDVYTYTILISSYCK 253 (258)
Q Consensus 229 ~M~~~~~~~~-pd~~ty~~li~~~~~ 253 (258)
+--+.+--+. -|..+..-||.+|-.
T Consensus 215 ~~~qip~f~~sed~r~lenLL~ayd~ 240 (308)
T KOG1585|consen 215 DCSQIPAFLKSEDSRSLENLLTAYDE 240 (308)
T ss_pred chhcCccccChHHHHHHHHHHHHhcc
Confidence 8444322121 567788889988853
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=70.13 E-value=44 Score=25.06 Aligned_cols=79 Identities=11% Similarity=0.034 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 172 VTCLIKVLGEEGLVNEALATFYRMKQFR--CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 172 ~~~li~~~~~~g~~~~a~~l~~~M~~~g--~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
|+.-. ...+.|++++|.+.|+.+...- =.-....---|+.+|-+.|++++|...+++.++.+=. -|+ +-|-..+.
T Consensus 14 y~~a~-~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~-hp~-vdYa~Y~~ 90 (142)
T PF13512_consen 14 YQEAQ-EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT-HPN-VDYAYYMR 90 (142)
T ss_pred HHHHH-HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CCC-ccHHHHHH
Confidence 44333 3467899999999999998741 1223455667899999999999999999999886521 133 34656666
Q ss_pred HHHH
Q 047392 250 SYCK 253 (258)
Q Consensus 250 ~~~~ 253 (258)
|++.
T Consensus 91 gL~~ 94 (142)
T PF13512_consen 91 GLSY 94 (142)
T ss_pred HHHH
Confidence 6554
No 264
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=69.75 E-value=7.8 Score=25.92 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=19.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC
Q 047392 174 CLIKVLGEEGLVNEALATFYRMKQFR 199 (258)
Q Consensus 174 ~li~~~~~~g~~~~a~~l~~~M~~~g 199 (258)
++++-+.+|.-.++|++|.+-|.+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 35677777777888888888887766
No 265
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=69.11 E-value=38 Score=33.66 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 203 DVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 203 ~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
|...|..+-++|.++|+...|.++|++...
T Consensus 595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 595 DYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 667777888888888888888888877765
No 266
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=68.45 E-value=43 Score=24.37 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 047392 150 GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193 (258)
Q Consensus 150 ~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~ 193 (258)
.+.++|..|...|++-.. +.-|..--..+...|++++|.+||+
T Consensus 81 ~~~~if~~l~~~~IG~~~-A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKL-ALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTB-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHH-HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555555544322 2244445555555555555555554
No 267
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=68.08 E-value=16 Score=19.17 Aligned_cols=28 Identities=21% Similarity=0.093 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 170 STVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 170 ~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
.+|..+-.+|...|++++|++-|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3577888888888999999998888765
No 268
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=67.84 E-value=1e+02 Score=28.39 Aligned_cols=143 Identities=13% Similarity=0.028 Sum_probs=91.0
Q ss_pred HHhCccCCCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHH-------------------------HHHHHHccCChH
Q 047392 95 LVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKE-------------------------MGIVFARGNNVK 149 (258)
Q Consensus 95 l~~g~~~~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~-------------------------li~~~~~~g~~~ 149 (258)
+.......+..+....+.+.|++.|++.... .-.|+..+=.. =-+.+.+.|++.
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte-~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTE-HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHH
Confidence 3334444555555556667777777765432 22233221111 014567888999
Q ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-------CCHHH
Q 047392 150 GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV-------GNFNK 222 (258)
Q Consensus 150 ~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~-------g~~~~ 222 (258)
.|.+-|.+++++. + -|...|+-.--||.+.|.+..|++=.+...+. .|+ .+.+|.|. .+++.
T Consensus 376 ~Av~~YteAIkr~-P--~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~------~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 376 EAVKHYTEAIKRD-P--EDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPN------FIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHHHHHHHHhcC-C--chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--Cch------HHHHHHHHHHHHHHHHHHHH
Confidence 9999999998885 2 27778999999999999999988877766654 233 23444443 36778
Q ss_pred HHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 223 a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
|++.|++-.+.. |+..-+..-+.-|..
T Consensus 445 Aleay~eale~d----p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 445 ALEAYQEALELD----PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHhcC----chhHHHHHHHHHHHH
Confidence 888888877644 666655555544444
No 269
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=67.82 E-value=16 Score=23.30 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 047392 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217 (258)
Q Consensus 170 ~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 217 (258)
..++.|+..+++..-+++++..+++....|. .+..+|---+..+++.
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 3556666666666666666666666665553 4455555555555443
No 270
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=67.80 E-value=80 Score=30.43 Aligned_cols=103 Identities=11% Similarity=0.087 Sum_probs=77.7
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 047392 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206 (258)
Q Consensus 127 ~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~t 206 (258)
.+.=|...|..|.-++.+.|+++.+-+.|++-...-+. ....|+.+-.+|.-.|.--.|..++++-....-.|+..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~---~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG---EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh---hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 45568899999999999999999999999997665332 566899999999999999999999998654322354444
Q ss_pred HHHHHHHHH--HcCCHHHHHHHHHHhHh
Q 047392 207 YNVVINALC--RVGNFNKARFLLEQMEL 232 (258)
Q Consensus 207 y~~li~~~~--~~g~~~~a~~~f~~M~~ 232 (258)
---|+...| +-|.++++.++-.+...
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~ 422 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAIS 422 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHH
Confidence 444444444 35677887777776665
No 271
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=67.69 E-value=67 Score=26.31 Aligned_cols=140 Identities=9% Similarity=0.021 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHhhCCCCCC-HHHH---HHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh--c--
Q 047392 111 GINKATEFYHWVERFFHFFHN-EVTC---KEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE--E-- 182 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~-~~~y---~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~--~-- 182 (258)
+.++|.+.|++....+ |+ ...- -.+..++-+.++.++|...+++..+.... .++ .-|--.+.|.+. .
T Consensus 47 ~y~~Ai~~f~~l~~~y---P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~-~~~-~~~a~Y~~g~~~~~~~~ 121 (243)
T PRK10866 47 NWKQAITQLEALDNRY---PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPN-IDYVLYMRGLTNMALDD 121 (243)
T ss_pred CHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC-CCc-hHHHHHHHHHhhhhcch
Confidence 3679999999998643 33 2222 23456778999999999999999887321 122 234444555442 1
Q ss_pred -------------CC---hHHHHHHHHHHHhCCCCCCH------HHH------------HHHHHHHHHcCCHHHHHHHHH
Q 047392 183 -------------GL---VNEALATFYRMKQFRCRPDV------YAY------------NVVINALCRVGNFNKARFLLE 228 (258)
Q Consensus 183 -------------g~---~~~a~~l~~~M~~~g~~p~~------~ty------------~~li~~~~~~g~~~~a~~~f~ 228 (258)
.| ..+|.+-|++..+. -|+. ... -.+-.-|-+.|.+..|..-|+
T Consensus 122 ~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~ 199 (243)
T PRK10866 122 SALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVE 199 (243)
T ss_pred hhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 12 34566777776653 2433 221 122334888999999999999
Q ss_pred HhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 229 QMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 229 ~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.+.+.=-.........-.|+.+|.+.|..
T Consensus 200 ~v~~~Yp~t~~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 200 QMLRDYPDTQATRDALPLMENAYRQLQLN 228 (243)
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence 99874210113344566777888877754
No 272
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=67.63 E-value=66 Score=31.59 Aligned_cols=53 Identities=8% Similarity=0.012 Sum_probs=39.3
Q ss_pred CCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 047392 102 YRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRR 161 (258)
Q Consensus 102 ~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 161 (258)
+.+.|.++.++|.|.+-.+-++ +...|.-|-+.|.+..+++-|.-.+..|+..
T Consensus 734 ~FSfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~a 786 (1416)
T KOG3617|consen 734 DFSFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNA 786 (1416)
T ss_pred ceeEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhh
Confidence 4456666777888888766665 4567999999999999888777777666543
No 273
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=66.74 E-value=43 Score=23.70 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 206 AYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 206 ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
-|..|+.-|-..|..++|.+++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 389999999999999999999999988
No 274
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.67 E-value=79 Score=26.73 Aligned_cols=90 Identities=12% Similarity=0.049 Sum_probs=48.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047392 136 KEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215 (258)
Q Consensus 136 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~ 215 (258)
..=|++++..+++.++....-+--+.-- +.-..+..--|--|.|.|+...+.++-..=...--.-+...|.++.+.|.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pE--klPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPE--KLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcc--cCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 3345666766776666555444332211 11222345555556777777776666666544211123333666666655
Q ss_pred H-----cCCHHHHHHHH
Q 047392 216 R-----VGNFNKARFLL 227 (258)
Q Consensus 216 ~-----~g~~~~a~~~f 227 (258)
. .|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 4 46777776665
No 275
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=66.60 E-value=79 Score=26.73 Aligned_cols=103 Identities=13% Similarity=0.007 Sum_probs=69.8
Q ss_pred ccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcc--CC-hHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh
Q 047392 105 PQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARG--NN-VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE 181 (258)
Q Consensus 105 ~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~--g~-~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~ 181 (258)
.|-...+...|...|....+-.| ++...+..+-.++..+ +. ..++..+|++..... .-|+.+-.-|--.+-.
T Consensus 165 ~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D---~~~iral~lLA~~afe 239 (287)
T COG4235 165 AYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD---PANIRALSLLAFAAFE 239 (287)
T ss_pred HHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC---CccHHHHHHHHHHHHH
Confidence 33334456799999998875544 3444455555554433 22 457999999998864 2255566667778899
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047392 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~ 214 (258)
.|++.+|...|+.|.+.. |.-..+..+|..-
T Consensus 240 ~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~~ 270 (287)
T COG4235 240 QGDYAEAAAAWQMLLDLL--PADDPRRSLIERS 270 (287)
T ss_pred cccHHHHHHHHHHHHhcC--CCCCchHHHHHHH
Confidence 999999999999999864 5555566666543
No 276
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=65.71 E-value=42 Score=25.16 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=14.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCC
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRGN 163 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g~ 163 (258)
++..+.+.+..-.|.++++++.+.+.
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p 51 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGP 51 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCC
Confidence 55555555444556666666655543
No 277
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=65.42 E-value=18 Score=18.77 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=9.7
Q ss_pred HHHHHcCCHHHHHHHHHHhHh
Q 047392 212 NALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..+.+.|++++|.+.|++...
T Consensus 9 ~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 9 QAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 344445555555555554443
No 278
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=64.86 E-value=41 Score=32.86 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+++|..+|.+-++ |..|=.-|-..|.+++|.++-+.--+-... .||-.-..-+-..++++.|++.
T Consensus 816 lEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr-----~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 816 LEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR-----NTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceehh-----hhHHHHHHHHHhhccHHHHHHH
Confidence 6666666666653 444445556677788777776543222211 1455555555555666666665
Q ss_pred HHHH-----------HhC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 192 FYRM-----------KQF--------RCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 192 ~~~M-----------~~~--------g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
|++- ++. .-..|..-|...=..+-..|++|.|..+|..-+
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 5542 111 011233334434344445667777666665544
No 279
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=64.59 E-value=15 Score=31.07 Aligned_cols=47 Identities=23% Similarity=0.250 Sum_probs=37.2
Q ss_pred CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 199 RCRPDVYA-YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 199 g~~p~~~t-y~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
-+.||..+ ||.-|....+.||+++|+.+.+|-++.|.. --..||-.-
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~--~Ar~tFik~ 298 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST--SARSTFISS 298 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--hHHHHHHHH
Confidence 45577766 589999999999999999999999999964 444454433
No 280
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=63.61 E-value=1e+02 Score=26.85 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=21.5
Q ss_pred hcCChHHHHHHHHHHHh---CCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 181 EEGLVNEALATFYRMKQ---FRCRPDVYAYN--VVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~---~g~~p~~~ty~--~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
+.++.++|++.++++++ .--.||.+.|- .+...+...|++.++.+..++.+.
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33445555555555443 11233444432 222223334555555555444443
No 281
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=63.57 E-value=43 Score=31.84 Aligned_cols=92 Identities=11% Similarity=0.110 Sum_probs=57.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 047392 137 EMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN------EALATFYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 137 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~------~a~~l~~~M~~~g~~p~~~ty~~l 210 (258)
+|+.+|..+|++..+..+++.+....-.-+.=...||.-|..+.+.|.++ .|.++++.-. +.-|.-||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78888888999888888888887653222112234777888888888654 3344444433 44588888887
Q ss_pred HHHHHHcCCHHHHHHHHHHhH
Q 047392 211 INALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 211 i~~~~~~g~~~~a~~~f~~M~ 231 (258)
+++-..--.-....-+..+..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776655333333333444443
No 282
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.48 E-value=31 Score=22.99 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=27.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 047392 181 EEGLVNEALATFYRMKQFRCRPD--VYAYNVVINALCRVGNFNKARFL 226 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~~ 226 (258)
...+.++|+.+|....+.-..+. -.+...|+.+|+.-|+.++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777766654322221 14567777777777777776655
No 283
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=63.38 E-value=59 Score=29.84 Aligned_cols=83 Identities=11% Similarity=-0.066 Sum_probs=37.3
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
.++++|+..|-+.-. --++|-+-|.-=..+|++.|++++|++=-.+-++-. |.-. --|+-.=.++.-.|++++|+
T Consensus 16 ~d~~~ai~~~t~ai~--l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~-kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIM--LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWA-KGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred ccHHHHHHHHHHHHc--cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--Cchh-hHHHHhHHHHHhcccHHHHH
Confidence 345555555554431 112344445555555555555555554444433321 2100 12444444444445555555
Q ss_pred HHHHHHHh
Q 047392 190 ATFYRMKQ 197 (258)
Q Consensus 190 ~l~~~M~~ 197 (258)
.-|.+=.+
T Consensus 91 ~ay~~GL~ 98 (539)
T KOG0548|consen 91 LAYSEGLE 98 (539)
T ss_pred HHHHHHhh
Confidence 55555443
No 284
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=62.70 E-value=16 Score=21.24 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 210 VINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 210 li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
|-.+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5578999999999999999999654
No 285
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=62.63 E-value=1.2e+02 Score=27.53 Aligned_cols=83 Identities=14% Similarity=0.095 Sum_probs=56.8
Q ss_pred HHHHHHHH--HccCChHHHHHHHHHHHHc--CCCC-C---------cCHHHHHHHHHHHHhcCChHHHHHHHHHHHh---
Q 047392 135 CKEMGIVF--ARGNNVKGLWDFLKEMSRR--GNGE-L---------VTTSTVTCLIKVLGEEGLVNEALATFYRMKQ--- 197 (258)
Q Consensus 135 y~~li~~~--~~~g~~~~a~~~~~~m~~~--g~~~-~---------~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~--- 197 (258)
|-.|..++ -+.++..+|.+.+..-.+. +..+ - .|-.-=+..++++...|++.+++.++++|..
T Consensus 80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL 159 (549)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 44455443 3677888887777665554 2221 1 1333346788999999999999999999875
Q ss_pred -CCCCCCHHHHHHHHHHHHHc
Q 047392 198 -FRCRPDVYAYNVVINALCRV 217 (258)
Q Consensus 198 -~g~~p~~~ty~~li~~~~~~ 217 (258)
+.+.-|+.+||.++-.+++.
T Consensus 160 krE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 160 KRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred hhhhcccHHHHHHHHHHHhHH
Confidence 34558999999977666653
No 286
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.13 E-value=14 Score=23.30 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 185 ~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
++++.++.+.++.. .=|-.----+|.|+...|+.++|.++.+++..
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444444331 11333334566777777777777777766653
No 287
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.65 E-value=63 Score=23.85 Aligned_cols=45 Identities=7% Similarity=0.020 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 151 a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
..+-++.+....+.| +..+..+-+.+|-+..|+..|.++|+-.+.
T Consensus 68 vrkglN~l~~yDlVP--~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVP--SPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444555555555555 444677777888888888888888877764
No 288
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=61.62 E-value=80 Score=25.07 Aligned_cols=97 Identities=20% Similarity=0.067 Sum_probs=57.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHH-HHHhcCC--hHHHHHHHHHHHhCCCCCCHH----HH
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK-VLGEEGL--VNEALATFYRMKQFRCRPDVY----AY 207 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~-~~~~~g~--~~~a~~l~~~M~~~g~~p~~~----ty 207 (258)
++...-.....|++++|..-++++.+.--..+--...|..+.. +||..+. +-+|.-++.-.... ..|+.. .+
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~-~~ps~~EL~V~~ 110 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG-RLPSPEELGVPP 110 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CCCCHHHcCCCH
Confidence 4444445556778888877777765441111111224777777 7888775 44666666655543 344332 22
Q ss_pred HHHHHHHH--------------HcCCHHHHHHHHHHhHh
Q 047392 208 NVVINALC--------------RVGNFNKARFLLEQMEL 232 (258)
Q Consensus 208 ~~li~~~~--------------~~g~~~~a~~~f~~M~~ 232 (258)
-..|.|.| +.|+++.|++.++-|..
T Consensus 111 ~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 111 IAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 23444433 47899999999998864
No 289
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=61.47 E-value=73 Score=24.58 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=58.4
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047392 116 TEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195 (258)
Q Consensus 116 ~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M 195 (258)
+++...+. ..+++|+...|..+|..+.+.|+......+ ...++-+ |....-..+-.+. +....+.++--.|
T Consensus 14 lEYirSl~-~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~--DSk~lA~~LLs~~--~~~~~~~Ql~lDM 84 (167)
T PF07035_consen 14 LEYIRSLN-QHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIP--DSKPLACQLLSLG--NQYPPAYQLGLDM 84 (167)
T ss_pred HHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccC--CcHHHHHHHHHhH--ccChHHHHHHHHH
Confidence 45555555 568999999999999999999986654433 3444444 4333333332222 2223333333333
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047392 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230 (258)
Q Consensus 196 ~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M 230 (258)
... =...+..+++.+...|++-+|.++....
T Consensus 85 LkR----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 85 LKR----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHH----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 321 1113556666777777777777776664
No 290
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=60.09 E-value=11 Score=20.33 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=11.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHH
Q 047392 168 TTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~ 189 (258)
|...|+-|-..|...|+.++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 3445555555555555555553
No 291
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.98 E-value=1.1e+02 Score=26.06 Aligned_cols=92 Identities=12% Similarity=0.046 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFF-HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~-p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
..+|+..|.+.-. +. -|.+-|.-=-.+|++.|..+.|.+=.+.-..-. |. -..+|..|=-+|.-.|++++|.+
T Consensus 97 Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~-yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 97 YQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PH-YSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hH-HHHHHHHHHHHHHccCcHHHHHH
Confidence 5688888887763 33 455566667788999999988877666654432 21 24478888888999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHH
Q 047392 191 TFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li 211 (258)
-|++-.+ +.|+-.+|-.=+
T Consensus 171 aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 171 AYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHhhhc--cCCCcHHHHHHH
Confidence 9887765 568777774433
No 292
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.90 E-value=1e+02 Score=28.61 Aligned_cols=94 Identities=15% Similarity=0.105 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHc-CCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047392 148 VKGLWDFLKEMSRR-GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226 (258)
Q Consensus 148 ~~~a~~~~~~m~~~-g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~ 226 (258)
+....++|-++... +..++|| +++.|=--|--.|++++|..-|+...... +-|...||-|=..++...+-++|..-
T Consensus 410 l~~i~~~fLeaa~~~~~~~Dpd--vQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPD--VQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChh--HHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHH
Confidence 34566677666554 3335445 57777667788899999999999988743 34778899999999999999999999
Q ss_pred HHHhHhCCCCCCCCHH--HHHHHH
Q 047392 227 LEQMELPGFRCPPDVY--TYTILI 248 (258)
Q Consensus 227 f~~M~~~~~~~~pd~~--ty~~li 248 (258)
|++-.+ ++|+.+ -||.=|
T Consensus 487 Y~rALq----LqP~yVR~RyNlgI 506 (579)
T KOG1125|consen 487 YNRALQ----LQPGYVRVRYNLGI 506 (579)
T ss_pred HHHHHh----cCCCeeeeehhhhh
Confidence 999987 447654 255444
No 293
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.55 E-value=53 Score=22.35 Aligned_cols=66 Identities=15% Similarity=0.071 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047392 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224 (258)
Q Consensus 151 a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 224 (258)
+.++++.+.++|+- +..-.+.+-.+-...|+.+.|.+++.... .| ..-|...++++-..|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il---T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL---TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC---CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 45566666666532 21122222222234566666666666665 32 234566666666666554443
No 294
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=59.11 E-value=1.2e+02 Score=26.35 Aligned_cols=87 Identities=11% Similarity=0.117 Sum_probs=55.7
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CcCHHHH--HHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHH-
Q 047392 136 KEMGIVFARGNNVKGLWDFLKEMSRRGNGE-LVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQ-----FRCRPDVYA- 206 (258)
Q Consensus 136 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~t~--~~li~~~~~~g~~~~a~~l~~~M~~-----~g~~p~~~t- 206 (258)
..++...-+.++.++|.++++++++.-... .|+.+.| +.+..++...||..++.+++++.++ .|+.|++.+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 344455555668899999999988762111 1244444 4556667778999999999999887 788887655
Q ss_pred HHHHHHHHH-HcCCHHH
Q 047392 207 YNVVINALC-RVGNFNK 222 (258)
Q Consensus 207 y~~li~~~~-~~g~~~~ 222 (258)
|+.+=.-|- +.|++..
T Consensus 159 fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 444433333 3455444
No 295
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.41 E-value=1.1e+02 Score=25.56 Aligned_cols=84 Identities=13% Similarity=0.106 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 112 INKATEFYHWVERFF---HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-NGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~---~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
...|...|....+.+ -+.||..-| |-.++...|+.++|-.+|..+.++- -.|+.. ...=-|-.+..+.|+.++
T Consensus 157 y~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp-dallKlg~~~~~l~~~d~ 233 (262)
T COG1729 157 YAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAP-DALLKLGVSLGRLGNTDE 233 (262)
T ss_pred HHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCCh-HHHHHHHHHHHHhcCHHH
Confidence 568888888776533 233444333 7899999999999999999998763 223221 246667778899999999
Q ss_pred HHHHHHHHHhC
Q 047392 188 ALATFYRMKQF 198 (258)
Q Consensus 188 a~~l~~~M~~~ 198 (258)
|..+|++..+.
T Consensus 234 A~atl~qv~k~ 244 (262)
T COG1729 234 ACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 296
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=57.95 E-value=78 Score=30.12 Aligned_cols=91 Identities=16% Similarity=0.166 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-----
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA----- 206 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~t----- 206 (258)
..+...+-..+.+...+..|-++|..|- | --++++.....+++.+|..+-+..-+ +.||+..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~g--------D---~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqw 813 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMG--------D---LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQW 813 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhc--------c---HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHH
Confidence 3344445555666677778888888873 3 35678888999999999999887755 3455532
Q ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHhHhCCC
Q 047392 207 ------YNVVINALCRVGNFNKARFLLEQMELPGF 235 (258)
Q Consensus 207 ------y~~li~~~~~~g~~~~a~~~f~~M~~~~~ 235 (258)
|--.=.+|-++|+..+|.++++++....+
T Consensus 814 LAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 34445789999999999999999976553
No 297
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=57.49 E-value=83 Score=30.08 Aligned_cols=79 Identities=5% Similarity=-0.157 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHccCChH------HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC
Q 047392 112 INKATEFYHWVER-FFHFFHNEVTCKEMGIVFARGNNVK------GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL 184 (258)
Q Consensus 112 ~~~a~~~f~~m~~-~~~~~p~~~~y~~li~~~~~~g~~~------~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~ 184 (258)
+..+..+++..-. ..|-+.=...||..|+.+.+.|.++ .|.+++++-. .+.|..||-.|+.+-..--+
T Consensus 44 ~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~-----ln~d~~t~all~~~sln~t~ 118 (1117)
T COG5108 44 FLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR-----LNGDSLTYALLCQASLNPTQ 118 (1117)
T ss_pred HHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh-----cCCcchHHHHHHHhhcChHh
Confidence 4444444444331 1122333556788888888888764 2333333332 22377778777776544333
Q ss_pred hHHHHHHHHHH
Q 047392 185 VNEALATFYRM 195 (258)
Q Consensus 185 ~~~a~~l~~~M 195 (258)
-.-..-++.+.
T Consensus 119 ~~l~~pvl~~~ 129 (1117)
T COG5108 119 RQLGLPVLHEL 129 (1117)
T ss_pred HHhccHHHHHH
Confidence 33333344443
No 298
>PRK11906 transcriptional regulator; Provisional
Probab=56.94 E-value=1.5e+02 Score=26.84 Aligned_cols=114 Identities=12% Similarity=0.130 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCHH-HHHHHHHH--------HHc-cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh
Q 047392 112 INKATEFYHWVERFFHFFHNEV-TCKEMGIV--------FAR-GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE 181 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~-~y~~li~~--------~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~ 181 (258)
.+.|+.+|.+......+.|+-. .|..+--+ +.. .....+|.++-+.-.+-+ ..|...-..+=.+..-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld---~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT---TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHh
Confidence 6788888888774445566633 23222211 111 223445666666666654 2366555555555577
Q ss_pred cCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 182 EGLVNEALATFYRMKQFRCRPDV---YAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g~~p~~---~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
.++.+.|..+|++-...+ ||. ..|..++ +.-+|+.++|.+.+++-.+
T Consensus 351 ~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~--~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS--TDIASLYYYRALV--HFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hcchhhHHHHHHHHhhcC--CccHHHHHHHHHH--HHHcCCHHHHHHHHHHHhc
Confidence 788999999999987743 554 3333333 3457999999999999444
No 299
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.52 E-value=30 Score=23.05 Aligned_cols=48 Identities=17% Similarity=0.049 Sum_probs=33.3
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 144 ~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
...+-++|...+....+.-..+.---.++..|+.+|+.-|+++++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777776666444333344678888899999988887764
No 300
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=56.50 E-value=42 Score=29.29 Aligned_cols=75 Identities=7% Similarity=-0.094 Sum_probs=46.1
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 047392 140 IVFARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218 (258)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g 218 (258)
+-|.+.|++++|.+.|..-... .| |.++|..-..+|.+.+++..|+.=-.+.... | ...+.+|.|++
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~----~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL----d----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV----YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL----D----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc----CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh----h----HHHHHHHHHHH
Confidence 4577888888888888664332 33 6667777788888888887766555444331 1 23355666655
Q ss_pred CHHHHHHH
Q 047392 219 NFNKARFL 226 (258)
Q Consensus 219 ~~~~a~~~ 226 (258)
....++..
T Consensus 173 ~AR~~Lg~ 180 (536)
T KOG4648|consen 173 QARESLGN 180 (536)
T ss_pred HHHHHHhh
Confidence 44443333
No 301
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=55.56 E-value=1.9e+02 Score=27.59 Aligned_cols=107 Identities=12% Similarity=0.088 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
++.++.+.++|.+ .|-..+.-+.++|++......|+.-... .+.......|...|.-.-..|-.+-+.++
T Consensus 91 ~er~lv~mHkmpR---------Iwl~Ylq~l~~Q~~iT~tR~tfdrALra-LpvtqH~rIW~lyl~Fv~~~~lPets~rv 160 (835)
T KOG2047|consen 91 FERCLVFMHKMPR---------IWLDYLQFLIKQGLITRTRRTFDRALRA-LPVTQHDRIWDLYLKFVESHGLPETSIRV 160 (835)
T ss_pred HHHHHHHHhcCCH---------HHHHHHHHHHhcchHHHHHHHHHHHHHh-CchHhhccchHHHHHHHHhCCChHHHHHH
Confidence 5556666556652 3666677778888888888888876655 33333334688888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
+++-.+ .++..-+--|..+++.+++++|-+.+.....
T Consensus 161 yrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln 197 (835)
T KOG2047|consen 161 YRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLN 197 (835)
T ss_pred HHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcC
Confidence 888775 3445567778888888888888877766653
No 302
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=55.24 E-value=74 Score=22.69 Aligned_cols=87 Identities=16% Similarity=0.255 Sum_probs=57.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047392 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225 (258)
Q Consensus 146 g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 225 (258)
...++|..+.+.+...+. ...++--+-+..+.+.|++++|+. .- .....||.+.|-+| +-.|.|..+.+..
T Consensus 20 HcH~EA~tIa~wL~~~~~---~~E~v~lIr~~sLmNrG~Yq~ALl--~~--~~~~~pdL~p~~AL--~a~klGL~~~~e~ 90 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE---MEEVVALIRLSSLMNRGDYQEALL--LP--QCHCYPDLEPWAAL--CAWKLGLASALES 90 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT---THHHHHHHHHHHHHHTT-HHHHHH--HH--TTS--GGGHHHHHH--HHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHhhHHHHHHHH--hc--ccCCCccHHHHHHH--HHHhhccHHHHHH
Confidence 347889999999988763 244444556677889999999922 22 22346899988655 3458899999999
Q ss_pred HHHHhHhCCCCCCCCHHHH
Q 047392 226 LLEQMELPGFRCPPDVYTY 244 (258)
Q Consensus 226 ~f~~M~~~~~~~~pd~~ty 244 (258)
.+.++..+|- |....|
T Consensus 91 ~l~rla~~g~---~~~q~F 106 (116)
T PF09477_consen 91 RLTRLASSGS---PELQAF 106 (116)
T ss_dssp HHHHHCT-SS---HHHHHH
T ss_pred HHHHHHhCCC---HHHHHH
Confidence 9999988763 544444
No 303
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=55.04 E-value=2e+02 Score=27.61 Aligned_cols=117 Identities=12% Similarity=0.022 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
++-|..+|...... ++-+...|......=-..|..+....+|++.... ++- ..+.|-...+-+-+.|++-.|..+
T Consensus 532 ~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pk--ae~lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 532 IECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPK--AEILWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred HHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCc--chhHHHHHHHHHHhcCCcHHHHHH
Confidence 55666666665532 3345556666666666678888888888888775 322 334566666667778999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
+...-+.. +-+...|-+-+..-.....+++|..+|.+-...+
T Consensus 607 l~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~s 648 (913)
T KOG0495|consen 607 LDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSIS 648 (913)
T ss_pred HHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC
Confidence 99987753 2266778888888889999999999999988765
No 304
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=54.43 E-value=46 Score=23.84 Aligned_cols=89 Identities=12% Similarity=0.025 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHH-HcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 113 NKATEFYHWVERFFHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMS-RRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+|.+.+.+++...|++| |+.+==++-..+.....++. .++. +.|... +-.||. |+.++...
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~-----~~~~~d~g~e~--~~~t~~---------Ge~~~~~~ 69 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSD-----EDIKDDSGLEL--NWKTFT---------GEYDDIYE 69 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCC-----CccCCCCCeEE--eeeeec---------CchHHHHH
Confidence 377888999988889999 66555555555554444431 0111 112222 333333 77777766
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVG 218 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g 218 (258)
.+=++.. |...|...+...+......|
T Consensus 70 ~ll~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 70 ALLKQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred HHHHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 6666655 66668888877777776665
No 305
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=54.32 E-value=2.1e+02 Score=27.65 Aligned_cols=90 Identities=12% Similarity=0.033 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-C----------CcCHHHHHHHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-E----------LVTTSTVTCLIKVLG 180 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~----------~~~~~t~~~li~~~~ 180 (258)
.++..+.+....+..|+.-+......++... .|++..+..++++....|.. . ..+....-.|++++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 4455666666665667777777777666555 58888888888877654311 0 112224555666665
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCH
Q 047392 181 EEGLVNEALATFYRMKQFRCRPDV 204 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~g~~p~~ 204 (258)
+ ++...+++++++|...|+.+..
T Consensus 258 ~-~d~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 258 N-QDGAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred c-CCHHHHHHHHHHHHHhCCCHHH
Confidence 5 8899999999999999876543
No 306
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=54.02 E-value=31 Score=17.89 Aligned_cols=25 Identities=28% Similarity=0.186 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 172 VTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 172 ~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
|..+=..|...|+.++|.+.|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555555566666666555543
No 307
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=53.91 E-value=64 Score=21.67 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=36.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
...+.......|+.+.|..+++.+. +| | +. |..+++++-..|..+-|..
T Consensus 35 ~e~I~a~~~~~G~~~aa~~Ll~~L~-r~--~--~W--f~~Fl~AL~~~~~~~LA~~ 83 (84)
T cd08789 35 KERIQAAENNSGNIKAAWTLLDTLV-RR--D--NW--LEPFLDALRECGLGHLARL 83 (84)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHh-cc--C--Ch--HHHHHHHHHHcCCHHHHHh
Confidence 3445555556789999999999998 54 3 53 8999999999988776654
No 308
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=53.86 E-value=52 Score=26.57 Aligned_cols=87 Identities=9% Similarity=-0.000 Sum_probs=61.0
Q ss_pred ccCHHHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHccCC---------hHHHHHHHHHHHHcCCCCCcCHHHHH
Q 047392 109 TLGINKATEFYHWVERFF------HFFHNEVTCKEMGIVFARGNN---------VKGLWDFLKEMSRRGNGELVTTSTVT 173 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~------~~~p~~~~y~~li~~~~~~g~---------~~~a~~~~~~m~~~g~~~~~~~~t~~ 173 (258)
....+.|+.+...|--.. +-.-...-|..+-.+|++.|- .+...++++...+.|++ ..=.+.|+
T Consensus 134 iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~-kviPHIYs 212 (236)
T TIGR03581 134 IVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVE-KVIPHVYS 212 (236)
T ss_pred eeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCC-eeccccce
Confidence 456899999999995221 111235568888999998884 45567777777777764 22334688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 047392 174 CLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 174 ~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
++|+-=--.-+.++..+++..|+
T Consensus 213 siIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 213 SIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred eccccccCCCCHHHHHHHHHHhh
Confidence 88887666667888888888776
No 309
>PRK09857 putative transposase; Provisional
Probab=53.50 E-value=1.4e+02 Score=25.32 Aligned_cols=64 Identities=13% Similarity=0.046 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC
Q 047392 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236 (258)
Q Consensus 172 ~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~ 236 (258)
+..++.-..+.++.++..++++...+. .+......-++..-+-+.|..+++.++..+|...|+.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 566776667788888888888888765 3334445556677777888888899999999999965
No 310
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.30 E-value=24 Score=22.16 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 173 TCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 173 ~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
=.+|.||...|++++|.+..+++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4467777777777777776666643
No 311
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=53.00 E-value=65 Score=23.13 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=14.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 047392 175 LIKVLGEEGLVNEALATFYRMKQFR 199 (258)
Q Consensus 175 li~~~~~~g~~~~a~~l~~~M~~~g 199 (258)
+|+-+.+|.-.++|++|.+-|.++|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3455555555666666666665554
No 312
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.73 E-value=1e+02 Score=25.21 Aligned_cols=60 Identities=8% Similarity=-0.094 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 172 VTCLIKVLGEEGLVNEALATFYRMKQ----FR-CRPDVYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 172 ~~~li~~~~~~g~~~~a~~l~~~M~~----~g-~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
---|-.-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.++...+--+|.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34566778889999999999998842 22 44566667778888888898888877766654
No 313
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.66 E-value=1.9e+02 Score=26.67 Aligned_cols=91 Identities=8% Similarity=-0.035 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----------cCHHHHHHHHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL----------VTTSTVTCLIKVLG 180 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----------~~~~t~~~li~~~~ 180 (258)
+.++..+.+....+..|+..+......++... .|++..+...++.+...+-... +.....-.|++++
T Consensus 176 s~~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al- 252 (504)
T PRK14963 176 TEEEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL- 252 (504)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-
Confidence 36677777777665668877777666665544 5888888888877655431111 1222345566666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCH
Q 047392 181 EEGLVNEALATFYRMKQFRCRPDV 204 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~g~~p~~ 204 (258)
..++.++|+.++++|...|..|..
T Consensus 253 ~~~d~~~Al~~l~~Ll~~G~~~~~ 276 (504)
T PRK14963 253 AQGDAAEALSGAAQLYRDGFAART 276 (504)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHH
Confidence 558999999999999999866543
No 314
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=52.59 E-value=1.8e+02 Score=26.27 Aligned_cols=120 Identities=9% Similarity=-0.054 Sum_probs=79.2
Q ss_pred cCHHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHH----HHHc-----------------------
Q 047392 110 LGINKATEFYHWVERFFHFF-HNEVTCKEMGIVFARGNNVKGLWDFLKE----MSRR----------------------- 161 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~-p~~~~y~~li~~~~~~g~~~~a~~~~~~----m~~~----------------------- 161 (258)
..+++|.-.|+.... +. -+..+|.-|+.+|...|++.+|.-+-++ |..+
T Consensus 348 ~R~~~A~IaFR~Aq~---Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQM---LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred cchHHHHHHHHHHHh---cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHH
Confidence 336677777777652 33 3566899999999999998876554333 3222
Q ss_pred -----CCCCCcCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 162 -----GNGELVTT-STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 162 -----g~~~~~~~-~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
|....|+- ..-+.+-.-+...|..++++.+++.-.. ..||..--+.|=+-+.-.+.+.+|++.|..-...+
T Consensus 425 kf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 425 KFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 11111120 0234455567777888888888887665 35888888888888888888888888887766533
No 315
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.36 E-value=70 Score=28.52 Aligned_cols=104 Identities=17% Similarity=0.113 Sum_probs=61.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcC----------------ChHHHHHHHHHHHh
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG----------------LVNEALATFYRMKQ 197 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g----------------~~~~a~~l~~~M~~ 197 (258)
+..++|.-+.+.|++-.-.++...-...-+..-..+.++..+-..|.+.. -.++|.++|.+...
T Consensus 80 sLd~Vi~~l~~~G~vir~sdf~~~~~sswigw~~~~~~~k~l~w~~~~~~~~~~~~l~e~l~~i~~l~eka~~~~~~ll~ 159 (439)
T KOG2911|consen 80 SLDTVIDYLIQEGDVIRISDFLDDPDSSWIGWLVGVSIFKPLRWSFSKLKNSASSILEERLPLIKLLKEKALDVYAELLH 159 (439)
T ss_pred cHHHHHHHHHhccCeeeHHHhhcCCCcccchhccceeeechhhhhhhhhccchhHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888765555554322221111223334445555554332 25678888877665
Q ss_pred CCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 198 FRCR----PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 198 ~g~~----p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
.++- --++|||.+-..|... | .||..|+..++...+..++
T Consensus 160 ~~~~~~~t~~Vvt~nef~tlc~~~----------------~---~~~~~t~~l~l~~l~~~k~ 203 (439)
T KOG2911|consen 160 EEVLSECTGAVVTLNEFQTLCSNL----------------G---KPDEETKDLVLCWLAYQKH 203 (439)
T ss_pred hhhhhccCceeeeHHHHHHHhccC----------------C---CCcHHHHHHHHHHHHhhhh
Confidence 5432 2356777777666554 2 2888888888877776654
No 316
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=52.26 E-value=1.7e+02 Score=25.97 Aligned_cols=96 Identities=10% Similarity=0.053 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
..+++-|.-++.+.+++.+|.+.-+...+.+ ..|+-..---=.+|.-.|+++.|+..|+++.+. .|+-..-+.=|
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~---~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el 331 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD---PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAEL 331 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 4567778888999999999999988887764 124333333345677789999999999999874 57666665555
Q ss_pred HHHH-HcCCH-HHHHHHHHHhHh
Q 047392 212 NALC-RVGNF-NKARFLLEQMEL 232 (258)
Q Consensus 212 ~~~~-~~g~~-~~a~~~f~~M~~ 232 (258)
..|. +.... +...++|..|-.
T Consensus 332 ~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 332 IKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 5554 44444 445888999965
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.97 E-value=1.2e+02 Score=29.80 Aligned_cols=56 Identities=16% Similarity=0.212 Sum_probs=34.9
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047392 137 EMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195 (258)
Q Consensus 137 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M 195 (258)
.+|.-|-.+.++.+--..++.+.+.|+. +..--+.||++|.|.++.++-.+..+.-
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gla---~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGLA---NSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcccc---cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 3555566666666666677777777753 3334577788888777766555444443
No 318
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=50.59 E-value=2.3e+02 Score=26.96 Aligned_cols=101 Identities=11% Similarity=0.114 Sum_probs=71.2
Q ss_pred CCCHHHHH--HHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 047392 129 FHNEVTCK--EMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS-TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205 (258)
Q Consensus 129 ~p~~~~y~--~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ 205 (258)
+|....|+ -+...+-+.|+++.|+..++.-.+. .|+.+ -|-.=-..+...|++++|..++++..+.. .+|..
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH----TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~ 440 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH----TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRA 440 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc----CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHH
Confidence 45555444 5777888999999999999987654 33432 12222367889999999999999987643 24443
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 206 AYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 206 ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.=+--..-..++.+.++|.++.....+.|
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 32234445567889999999988887776
No 319
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=50.55 E-value=29 Score=16.55 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=11.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 208 NVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 208 ~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
..+-..+...|+.+.|...|++..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333444444455555555444443
No 320
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.48 E-value=2.1e+02 Score=26.46 Aligned_cols=90 Identities=9% Similarity=0.043 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-C----------CcCHHHHHHHHHHHHh
Q 047392 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-E----------LVTTSTVTCLIKVLGE 181 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~----------~~~~~t~~~li~~~~~ 181 (258)
++..+......+..|+..+......++... .|++..|..++++....|-+ . ..+....-.|++++..
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~ 258 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA 258 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc
Confidence 344444555554567777766666555443 58888898888877655411 0 1233344556666554
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHH
Q 047392 182 EGLVNEALATFYRMKQFRCRPDVY 205 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g~~p~~~ 205 (258)
|+.+++.+++++|.+.|..|...
T Consensus 259 -~d~~~~l~~~~~l~~~g~~~~~i 281 (509)
T PRK14958 259 -KAGDRLLGCVTRLVEQGVDFSNA 281 (509)
T ss_pred -CCHHHHHHHHHHHHHcCCCHHHH
Confidence 89999999999999999887543
No 321
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=50.43 E-value=1.9e+02 Score=26.06 Aligned_cols=123 Identities=13% Similarity=0.077 Sum_probs=69.7
Q ss_pred hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhCC-
Q 047392 125 FFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS----TVTCLIKVLGEEGLVNEALATFYRMKQFR- 199 (258)
Q Consensus 125 ~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~----t~~~li~~~~~~g~~~~a~~l~~~M~~~g- 199 (258)
..-++-|+.-...+-..+.+.|+.++|...|+.-.--+ | +.+ .|..|+ ++.|+.++...+-...-...
T Consensus 225 ~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--p--y~i~~MD~Ya~LL---~~eg~~e~~~~L~~~Lf~~~~ 297 (564)
T KOG1174|consen 225 NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--P--DNVEAMDLYAVLL---GQEGGCEQDSALMDYLFAKVK 297 (564)
T ss_pred hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--h--hhhhhHHHHHHHH---HhccCHhhHHHHHHHHHhhhh
Confidence 33556677778888899999999999999998765431 2 211 233333 23344333333333221100
Q ss_pred -----------------------------CCCCHHHHHH-HH--HHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 200 -----------------------------CRPDVYAYNV-VI--NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 200 -----------------------------~~p~~~ty~~-li--~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
+..|...--. ++ ..+...|+.++|.=-|.+-+... .-+..+|.-|
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La---p~rL~~Y~GL 374 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA---PYRLEIYRGL 374 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc---hhhHHHHHHH
Confidence 0111111112 22 23445678888888888777632 1356689999
Q ss_pred HHHHHHcCCC
Q 047392 248 ISSYCKYGMQ 257 (258)
Q Consensus 248 i~~~~~~g~~ 257 (258)
+.+|--.|++
T Consensus 375 ~hsYLA~~~~ 384 (564)
T KOG1174|consen 375 FHSYLAQKRF 384 (564)
T ss_pred HHHHHhhchH
Confidence 9988877754
No 322
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=50.40 E-value=95 Score=22.69 Aligned_cols=41 Identities=12% Similarity=0.162 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 047392 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192 (258)
Q Consensus 151 a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~ 192 (258)
..++|..|...|++.... .-|..--..+-..|++.+|.+||
T Consensus 82 p~~if~~L~~~~IG~~~A-lfYe~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 82 PRELFQFLYSKGIGTKLA-LFYEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHHHHCCcchhhH-HHHHHHHHHHHHcCCHHHHHHHH
Confidence 344444444444433111 12333333344444455554444
No 323
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=50.23 E-value=1.9e+02 Score=25.97 Aligned_cols=136 Identities=14% Similarity=0.049 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHH-------------HHHHccCChHHHHHHHHHHHHcCC-CCCcCHHHHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMG-------------IVFARGNNVKGLWDFLKEMSRRGN-GELVTTSTVTCLIK 177 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li-------------~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~t~~~li~ 177 (258)
.+.|..-|++-.+ ..|+...-.++- +-..+.|++..|.+.|.+-..... ..++++..|--.-.
T Consensus 219 ~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 219 ADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred hHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 5567777766552 335433222211 335788999999999988765421 11236666777777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH--HcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHc
Q 047392 178 VLGEEGLVNEALATFYRMKQFRCRPDV-YAYNVVINALC--RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254 (258)
Q Consensus 178 ~~~~~g~~~~a~~l~~~M~~~g~~p~~-~ty~~li~~~~--~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~ 254 (258)
...+.|+.++|+.--++..+ .|. .....+..+-| -.++|++|.+-|+.-.+....+ -...|+.-...++-++
T Consensus 296 v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~-e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 296 VNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDC-EIRRTLREAQLALKKS 370 (486)
T ss_pred hhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-chHHHHHHHHHHHHHh
Confidence 78889999999998888765 343 33334444444 3578899999998887755431 2333454444455444
Q ss_pred C
Q 047392 255 G 255 (258)
Q Consensus 255 g 255 (258)
.
T Consensus 371 k 371 (486)
T KOG0550|consen 371 K 371 (486)
T ss_pred h
Confidence 3
No 324
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=50.04 E-value=1.5e+02 Score=25.33 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M 230 (258)
+++..-..|..+|.+.+|.++-+...... +.+...|-.++..++..|+--.|..-+++|
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 45666677888888888888888776643 456677777888888888866666665555
No 325
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=49.93 E-value=4.1 Score=30.05 Aligned_cols=56 Identities=9% Similarity=0.091 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047392 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228 (258)
Q Consensus 173 ~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~ 228 (258)
..+|+.|.+.+..+...+.++.+...+-.-+....+.++..|++.++.+..+++++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 45788888899999999999999987766788999999999999998888888887
No 326
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=48.98 E-value=79 Score=27.13 Aligned_cols=58 Identities=12% Similarity=0.198 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
.++++.|+..++.|.-..|..+--.+.+.=.+.+...+|+.+... ..-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-------~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-------PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-------hhhhHHHHHHHHH
Confidence 467778888888888888888877788888888888888888743 2236667766663
No 327
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=48.77 E-value=1.2e+02 Score=23.26 Aligned_cols=70 Identities=13% Similarity=0.044 Sum_probs=44.9
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 116 TEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 116 ~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
.+-+.++.+..|++.+..-- .++..+......-.|.++++.+.+.+..+ +..|----|+.+...|-+.+.
T Consensus 10 ~~~~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~i--s~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 10 LAQAEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQA--KPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCC--CcchHHHHHHHHHHCCCEEEE
Confidence 33344444466777666555 46666666666667899999998887544 444555556777777766543
No 328
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=48.63 E-value=52 Score=20.97 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 202 p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
|+...++-|++.+++..-+++++...++....|. -+..+|---++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~---I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS---IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHH
Confidence 4555666666666666666677777766666663 455566665555554
No 329
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.70 E-value=2.6e+02 Score=26.66 Aligned_cols=90 Identities=13% Similarity=0.042 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-C----------CcCHHHHHHHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-E----------LVTTSTVTCLIKVLG 180 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~----------~~~~~t~~~li~~~~ 180 (258)
.++..+.+.......|+..+......++.. -.|++..+..++++....|.. . ..+......|++++.
T Consensus 185 ~eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~ 262 (618)
T PRK14951 185 PETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA 262 (618)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 445556666555566887777777766663 358888888888776554421 0 112333445666655
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCH
Q 047392 181 EEGLVNEALATFYRMKQFRCRPDV 204 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~g~~p~~ 204 (258)
. |+...+++++++|.+.|..|..
T Consensus 263 ~-~d~~~al~~l~~l~~~G~~~~~ 285 (618)
T PRK14951 263 Q-GDGRTVVETADELRLNGLSAAS 285 (618)
T ss_pred c-CCHHHHHHHHHHHHHcCCCHHH
Confidence 5 8999999999999998877654
No 330
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=46.87 E-value=74 Score=21.54 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=34.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHH-cCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 136 KEMGIVFARGNNVKGLWDFLKEMSR-RGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 136 ~~li~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
..+....-..|+.+.|..+++.+.+ +| | +. |..+++++-..|.-+-|.
T Consensus 38 e~I~a~~~~~g~~~aa~~Ll~~L~~~r~--~--~w--f~~Fl~AL~~~g~~~la~ 86 (88)
T cd08812 38 EQILAEERNKGNIAAAEELLDRLERCDK--P--GW--FQAFLDALRRTGNDDLAK 86 (88)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHHhcc--C--Cc--HHHHHHHHHHcCCccHHH
Confidence 3344444445899999999999987 44 3 53 899999999888765554
No 331
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=46.63 E-value=58 Score=27.93 Aligned_cols=28 Identities=7% Similarity=0.033 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGN 146 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g 146 (258)
..=|.++|+....+.+ -|.+++.+-+.+
T Consensus 183 l~F~~~lFk~~~~Ek~-------i~~lis~Lrkg~ 210 (412)
T KOG2297|consen 183 LSFAVKLFKEWLVEKD-------INDLISSLRKGK 210 (412)
T ss_pred HHHHHHHHHHHHhhcc-------HHHHHHHHHhcC
Confidence 5567777876653321 355555555444
No 332
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=46.53 E-value=60 Score=22.80 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=32.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 137 EMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 137 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
.++..+...+..-.|.++++++.+.+..+ +..|---.|+.+...|-+.+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i--~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSI--SLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhCCCEEE
Confidence 45666666666667888888888776444 55555556666777766553
No 333
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=46.25 E-value=2.1e+02 Score=25.29 Aligned_cols=96 Identities=8% Similarity=0.030 Sum_probs=59.7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCcC-HHHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047392 137 EMGIVFARGNNVKGLWDFLKEMSRRGNGELVT-TSTVTCLIKVLGE---EGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212 (258)
Q Consensus 137 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~t~~~li~~~~~---~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~ 212 (258)
.|+-+|-...+++...++++.|..--....++ ..+---..-++-+ .|+-++|++++..+....-.++..||..+=.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34446888888999999999987652111111 1112233345556 7899999999999766555677777765554
Q ss_pred HHHH---------cCCHHHHHHHHHHhHh
Q 047392 213 ALCR---------VGNFNKARFLLEQMEL 232 (258)
Q Consensus 213 ~~~~---------~g~~~~a~~~f~~M~~ 232 (258)
.|.. ...++.|.+.|.+--.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 4432 1235667777765443
No 334
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=46.11 E-value=2.5e+02 Score=26.13 Aligned_cols=85 Identities=9% Similarity=-0.009 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCCH-----
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV--LGEEGLVNEALATFYRMKQFRCRPDV----- 204 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~--~~~~g~~~~a~~l~~~M~~~g~~p~~----- 204 (258)
...+..+++++..+|-.+...-+.+.++...+ . +...-..+... ..+.-..+-...+++-++.....+..
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~-~--~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~s 416 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI-T--PLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRES 416 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC-C--HHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHH
Confidence 56788888888888876655555554444332 2 11112222222 22334444444444444444455553
Q ss_pred --HHHHHHHHHHHHcCC
Q 047392 205 --YAYNVVINALCRVGN 219 (258)
Q Consensus 205 --~ty~~li~~~~~~g~ 219 (258)
.+|.+|++.+|....
T Consensus 417 a~l~~~~lv~~~c~~~~ 433 (574)
T smart00638 417 ALLAYGSLVRRYCVNTP 433 (574)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 567777776676553
No 335
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=45.89 E-value=74 Score=19.96 Aligned_cols=48 Identities=25% Similarity=0.127 Sum_probs=25.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----HcCCHHHHHHHH
Q 047392 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC-----RVGNFNKARFLL 227 (258)
Q Consensus 180 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~-----~~g~~~~a~~~f 227 (258)
-+.|++-+|-++++++=..--.+....|-.||...+ +.|+.+.|..+|
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 346667777777776632211234445555555433 466666666554
No 336
>PF00772 DnaB: DnaB-like helicase N terminal domain; InterPro: IPR007693 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity. This domain has a multi-helical structure that forms an orthogonal bundle [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1B79_D 1JWE_A 3GXV_C 3BGW_C 2R6D_B 2R6C_D 2R6E_B 2R6A_A 2VYE_A 2VYF_B ....
Probab=45.63 E-value=95 Score=21.11 Aligned_cols=7 Identities=0% Similarity=0.278 Sum_probs=2.2
Q ss_pred HHHHHHH
Q 047392 152 WDFLKEM 158 (258)
Q Consensus 152 ~~~~~~m 158 (258)
.++...+
T Consensus 24 ~~i~~~L 30 (103)
T PF00772_consen 24 DEIIDKL 30 (103)
T ss_dssp HHHHTT-
T ss_pred HHHhccC
Confidence 3333333
No 337
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=45.00 E-value=73 Score=22.52 Aligned_cols=91 Identities=11% Similarity=-0.023 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 113 NKATEFYHWVERFFHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
++|.+.+.+++..-|+.| |+.+==++-..+.....+..+..-. +.|+.. |-.||. |+++.....
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~~~~~~~~~~----d~~~E~--~~~T~~---------Ge~~~i~~a 69 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGSTPGVADIKL----DGNVEI--DWYTFA---------GEYGDIYLA 69 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCCCCCccccCC----CCCeEE--Eeeeec---------CchHHHHHH
Confidence 377888999998889999 6655444444444433333111000 112222 333333 676666665
Q ss_pred HHHHH--hCCCCCCHHHHHHHHHHHHHcC
Q 047392 192 FYRMK--QFRCRPDVYAYNVVINALCRVG 218 (258)
Q Consensus 192 ~~~M~--~~g~~p~~~ty~~li~~~~~~g 218 (258)
+=++. ..|...|...+...+.+....|
T Consensus 70 lLkq~~~~~~~~~d~e~l~~~~~lHl~rG 98 (105)
T TIGR03184 70 LLKQRCVADGPELDDESLAKALNLHVHRG 98 (105)
T ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 55543 4566777777777777766655
No 338
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=44.81 E-value=1.3e+02 Score=22.50 Aligned_cols=86 Identities=12% Similarity=-0.007 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRR-GNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
++.|++.|.+... -.+-....||.--.++--.|+.++|++=+++-.+- |-.-..--..|---=..|-..|+-+.|..
T Consensus 59 Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~ 136 (175)
T KOG4555|consen 59 LDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARA 136 (175)
T ss_pred hHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHH
Confidence 6699999999864 34456788999999999999999999988887665 21111111223333334667789999999
Q ss_pred HHHHHHhCC
Q 047392 191 TFYRMKQFR 199 (258)
Q Consensus 191 l~~~M~~~g 199 (258)
=|+.--+.|
T Consensus 137 DFe~AA~LG 145 (175)
T KOG4555|consen 137 DFEAAAQLG 145 (175)
T ss_pred hHHHHHHhC
Confidence 998877766
No 339
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=44.26 E-value=1.4e+02 Score=25.23 Aligned_cols=25 Identities=24% Similarity=0.069 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHH
Q 047392 202 PDVYAYNVVINALCRVGNFNKARFL 226 (258)
Q Consensus 202 p~~~ty~~li~~~~~~g~~~~a~~~ 226 (258)
.|+..|..++.||.-.|+.+.+.+=
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~dk 219 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAMDK 219 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4555566666666555555444333
No 340
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=43.57 E-value=80 Score=22.01 Aligned_cols=60 Identities=12% Similarity=0.093 Sum_probs=31.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCC
Q 047392 136 KEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG--LVNEALATFYRMKQFR 199 (258)
Q Consensus 136 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g--~~~~a~~l~~~M~~~g 199 (258)
..+|..|...|+.++|..-+.++.-... -...-..+|.++...+ .-+.+..++..+...|
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~----~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQ----HHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGG----HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCcc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 4566677778888888888877633311 2223344444444442 2234455556665544
No 341
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=43.37 E-value=2.7e+02 Score=25.74 Aligned_cols=91 Identities=5% Similarity=0.107 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC----C----------CCcCHHHHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN----G----------ELVTTSTVTCLIK 177 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~----~----------~~~~~~t~~~li~ 177 (258)
.++..+.++...+..|+..+......++.. -.|++..|...+++....+- . ...+....-.|++
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ 266 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVE 266 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHH
Confidence 556666666666666877777666666553 35888888888888744321 0 1123333445666
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 047392 178 VLGEEGLVNEALATFYRMKQFRCRPDVY 205 (258)
Q Consensus 178 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ 205 (258)
+..+ |+.++|+.+++++...|..|...
T Consensus 267 ai~~-~d~~~Al~~l~~L~~~g~~~~~~ 293 (507)
T PRK06645 267 YIIH-RETEKAINLINKLYGSSVNLEIF 293 (507)
T ss_pred HHHc-CCHHHHHHHHHHHHHcCCCHHHH
Confidence 6554 89999999999999999877643
No 342
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=43.24 E-value=2.1e+02 Score=24.49 Aligned_cols=138 Identities=18% Similarity=0.103 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH-------HHHc------------C-----CCCCc
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKE-------MSRR------------G-----NGELV 167 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~-------m~~~------------g-----~~~~~ 167 (258)
-..|+++|..+.+..|- .++=+.+|..+....+..+|...+.. |..+ + -.|..
T Consensus 149 s~KA~ELFayLv~hkgk---~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~ 225 (361)
T COG3947 149 SRKALELFAYLVEHKGK---EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKY 225 (361)
T ss_pred hhHHHHHHHHHHHhcCC---cccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccc
Confidence 56899999998865442 33446788889988888887776543 2221 0 12455
Q ss_pred CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCH-------------HHH----HHHHHHHHHcCCHHHHHHHHHH
Q 047392 168 TTSTVTCLIKVLGEEG-LVNEALATFYRMKQFRCRPDV-------------YAY----NVVINALCRVGNFNKARFLLEQ 229 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g-~~~~a~~l~~~M~~~g~~p~~-------------~ty----~~li~~~~~~g~~~~a~~~f~~ 229 (258)
|+.-|-+.+...-+-. .++++.++....+. +.-|+. .+| +..-..|..+|.+.+|.++-++
T Consensus 226 Dv~e~es~~rqi~~inltide~kelv~~ykg-dyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr 304 (361)
T COG3947 226 DVQEYESLARQIEAINLTIDELKELVGQYKG-DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQR 304 (361)
T ss_pred cHHHHHHHhhhhhccccCHHHHHHHHHHhcC-CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 8777887777654433 46777777766643 222211 334 4444678889999999999999
Q ss_pred hHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 230 MELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 230 M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
....+ ..+...|-.|+..|...|+
T Consensus 305 ~ltld---pL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 305 ALTLD---PLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HhhcC---hhhhHHHHHHHHHHHHhcc
Confidence 88764 2677789999999998886
No 343
>PRK09462 fur ferric uptake regulator; Provisional
Probab=43.00 E-value=1.3e+02 Score=22.29 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=34.0
Q ss_pred hCCCCCCHHHHHHHHHHHHcc-CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChH
Q 047392 125 FFHFFHNEVTCKEMGIVFARG-NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186 (258)
Q Consensus 125 ~~~~~p~~~~y~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~ 186 (258)
..|++.+..-. .++..+... +..-.|.++++.+.+.+... +..|----|+.+...|-+.
T Consensus 10 ~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i--~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 10 KAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEI--GLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCC--CHHHHHHHHHHHHHCCCEE
Confidence 44665554433 355555543 34556888888887776443 4445444556666666543
No 344
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=42.47 E-value=1.6e+02 Score=22.67 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=44.9
Q ss_pred HHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047392 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222 (258)
Q Consensus 156 ~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~ 222 (258)
+.+++.|+.. +. .--+++..+...++.=.|.+|++++.+.|..++..|----|..+.+.|-+..
T Consensus 15 ~~L~~~GlR~--T~-qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 15 KLCAQRNVRL--TP-QRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHcCCCC--CH-HHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 4456667766 32 3456777777677777888999999888877777776666777777776543
No 345
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=42.09 E-value=36 Score=18.36 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHhHhCCCCCCCCHHHHH
Q 047392 219 NFNKARFLLEQMELPGFRCPPDVYTYT 245 (258)
Q Consensus 219 ~~~~a~~~f~~M~~~~~~~~pd~~ty~ 245 (258)
.++.|..+|++..... |+..+|-
T Consensus 2 E~dRAR~IyeR~v~~h----p~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLVH----PEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHhC----CCchHHH
Confidence 3566777777776633 6666654
No 346
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=41.93 E-value=2.8e+02 Score=25.39 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=57.5
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047392 136 KEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215 (258)
Q Consensus 136 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~ 215 (258)
..|+.-|--.|.+.+|.....++ |.+.--..+++-+++-+.-+.|+-...+.++++.-.. ..+|-|-|-.||.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkGf~ 585 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhhhh
Confidence 45777888888888888888776 4433336678999999999999988888888888765 4567777888887
Q ss_pred Hc
Q 047392 216 RV 217 (258)
Q Consensus 216 ~~ 217 (258)
|.
T Consensus 586 RV 587 (645)
T KOG0403|consen 586 RV 587 (645)
T ss_pred hh
Confidence 64
No 347
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=41.74 E-value=57 Score=21.09 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=26.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 047392 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218 (258)
Q Consensus 180 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g 218 (258)
.-.|+.+++.+++++..+.|+.|..+..+.+..+.-+.|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 344677777777777777777777777766666665544
No 348
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=40.40 E-value=99 Score=23.97 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=40.0
Q ss_pred HHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 189 LATFYRMKQ-FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 189 ~~l~~~M~~-~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
-++++.+.+ .|+.|...++..++..|++.=.++.+..+|+.+...|
T Consensus 151 p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG 197 (199)
T smart00164 151 PDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Confidence 457777775 8999999999999999999889999999999988766
No 349
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=40.26 E-value=2.2e+02 Score=23.73 Aligned_cols=137 Identities=12% Similarity=0.034 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh--cCChHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE--EGLVNEAL 189 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~--~g~~~~a~ 189 (258)
.+.|.++.+.+..+++-+|.. |-.-|..+.+.++.+++.+.+.+|...-.-+ ...|..+++.+-. ......|.
T Consensus 103 ~~ka~~~l~~l~~e~~~~~~~--~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~---e~~~~~~l~~i~~l~~~~~~~a~ 177 (278)
T PF08631_consen 103 VEKALNALRLLESEYGNKPEV--FLLKLEILLKSFDEEEYEEILMRMIRSVDHS---ESNFDSILHHIKQLAEKSPELAA 177 (278)
T ss_pred HHHHHHHHHHHHHhCCCCcHH--HHHHHHHHhccCChhHHHHHHHHHHHhcccc---cchHHHHHHHHHHHHhhCcHHHH
Confidence 568899999998766554444 4445666666899999999999999883213 2357777777622 23445777
Q ss_pred HHHHHHHhCCCCCCHH--HHHHHHHHHHH---------cCCHHHHHHHHHHhHh-CCCCCCCCHHHHHHHHHHHHHcC
Q 047392 190 ATFYRMKQFRCRPDVY--AYNVVINALCR---------VGNFNKARFLLEQMEL-PGFRCPPDVYTYTILISSYCKYG 255 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~--ty~~li~~~~~---------~g~~~~a~~~f~~M~~-~~~~~~pd~~ty~~li~~~~~~g 255 (258)
..++++....+.|... .=-.++....- ..+++...++++.... .+.+ .+..+-.+++..+.+.|
T Consensus 178 ~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~--ls~~~~~a~~~LLW~~~ 253 (278)
T PF08631_consen 178 FCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQ--LSAEAASAIHTLLWNKG 253 (278)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHH
Confidence 7787777655555553 11112222111 1125666666775433 2322 56666666665555544
No 350
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=39.89 E-value=62 Score=23.03 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=11.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 047392 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVY 205 (258)
Q Consensus 176 i~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ 205 (258)
++.+...+..-.|.+|++.|.+.|...+..
T Consensus 14 l~~l~~~~~~~ta~ei~~~l~~~~~~is~~ 43 (120)
T PF01475_consen 14 LELLKESPEHLTAEEIYDKLRKKGPRISLA 43 (120)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHHTTTT--HH
T ss_pred HHHHHcCCCCCCHHHHHHHhhhccCCcCHH
Confidence 333333333334444444444443333333
No 351
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=39.81 E-value=1.4e+02 Score=24.71 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 047392 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204 (258)
Q Consensus 172 ~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~ 204 (258)
.-.|+.. |-.+++++|.+++++.-+.|+.|.-
T Consensus 242 v~~ml~~-~~~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 242 VKKMLQA-CLKRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred HHHHHHH-HHhccHHHHHHHHHHHHHcCCCHHH
Confidence 3444443 2334566666666666666665543
No 352
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=39.75 E-value=1.2e+02 Score=29.06 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=8.1
Q ss_pred HHHhcCChHHHHHHHHH
Q 047392 178 VLGEEGLVNEALATFYR 194 (258)
Q Consensus 178 ~~~~~g~~~~a~~l~~~ 194 (258)
.|+-.|++.+|-++|.+
T Consensus 641 ~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 641 VFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHhhhhHHHHHHHHHH
Confidence 34444555555555543
No 353
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=39.38 E-value=1.2e+02 Score=20.97 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHc-CCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047392 148 VKGLWDFLKEMSRR-GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199 (258)
Q Consensus 148 ~~~a~~~~~~m~~~-g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g 199 (258)
-++..+++..-+++ | ...|++.|+.++-+.|.-.-|..|-+.+.+.|
T Consensus 47 ~eq~~qmL~~W~~~~G-----~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 47 REQLYQMLLTWVNKTG-----RKASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 45555555444333 2 12246666666666666666666655555554
No 354
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=38.03 E-value=1e+02 Score=21.54 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=14.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 047392 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218 (258)
Q Consensus 184 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g 218 (258)
..-.|.+|++++++.|..++..|---.|+.+...|
T Consensus 15 ~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 15 GHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 33344444444444443334444333344444443
No 355
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=37.79 E-value=96 Score=24.74 Aligned_cols=58 Identities=9% Similarity=0.020 Sum_probs=44.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCC------------CcCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 047392 137 EMGIVFARGNNVKGLWDFLKEMSRRGNGE------------LVTTSTVTCLIKVLGEEGLVNEALATFYR 194 (258)
Q Consensus 137 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~------------~~~~~t~~~li~~~~~~g~~~~a~~l~~~ 194 (258)
+++..|.+.-.+.+..++++.|.+-.+.. .+.-..-|.-...|.+.|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 56677888888888999988887763111 12344578888999999999999999984
No 356
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=37.60 E-value=4e+02 Score=25.99 Aligned_cols=97 Identities=10% Similarity=0.010 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH--HHHHHHhCCCCCCHHHHHHH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA--TFYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~--l~~~M~~~g~~p~~~ty~~l 210 (258)
..|...-..+-..|..++|.+.|..-..-. | -++..-+++-.++.+.|+-.-|.. ++.+|.+.+ +-+...|-.+
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ld--P-~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~L 760 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALALD--P-DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYL 760 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhcC--C-CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 344444445556788888888887765542 2 134467899999999998887877 999998865 4577888888
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhC
Q 047392 211 INALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 211 i~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
=..+-+.|+.++|-+.|+--.+.
T Consensus 761 G~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 761 GEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHccchHHHHHHHHHHHhh
Confidence 88899999999999999877653
No 357
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.37 E-value=2.1e+02 Score=23.40 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=44.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHHc----CCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRR----GNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
+-.-|.+.|++++|.++|+.+... |- ..+...+...+..|+.+.|+.+....+--+|.
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW-~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGW-WSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 446688999999999999987432 22 23355577888999999999999888877664
No 358
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=37.20 E-value=3.4e+02 Score=25.16 Aligned_cols=91 Identities=12% Similarity=0.070 Sum_probs=64.2
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHH------------
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK------------ 177 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~------------ 177 (258)
++.++-.+.++.+..+.++.-+...+..+.. ...|.+.++..++++....|- +.+|+..+-+
T Consensus 178 i~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~--~a~Gs~RDalslLDq~i~~~~----~~It~~~v~~~lG~~~~~~~~~ 251 (515)
T COG2812 178 LDLEEIAKHLAAILDKEGINIEEDALSLIAR--AAEGSLRDALSLLDQAIAFGE----GEITLESVRDMLGLTDIEKLLS 251 (515)
T ss_pred CCHHHHHHHHHHHHHhcCCccCHHHHHHHHH--HcCCChhhHHHHHHHHHHccC----CcccHHHHHHHhCCCCHHHHHH
Confidence 4467778888888877788887776665543 347888999999999988752 1122222221
Q ss_pred --HHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 047392 178 --VLGEEGLVNEALATFYRMKQFRCRPDVYA 206 (258)
Q Consensus 178 --~~~~~g~~~~a~~l~~~M~~~g~~p~~~t 206 (258)
-....|+..++...++++.+.|..|....
T Consensus 252 ~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~l 282 (515)
T COG2812 252 LLEAILKGDAKEALRLINELIEEGKDPEAFL 282 (515)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 12456899999999999999998776654
No 359
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.13 E-value=3.4e+02 Score=25.00 Aligned_cols=93 Identities=9% Similarity=0.014 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CC----------CcCHHHHHHHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN-GE----------LVTTSTVTCLIKVLG 180 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~----------~~~~~t~~~li~~~~ 180 (258)
.++..+.++......|+..+......+... ..|++..|+.++++....+- .. ..+...+..++++..
T Consensus 182 ~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~ 259 (484)
T PRK14956 182 LSVLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLI 259 (484)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445556666665556777666666554433 35888888888887654321 01 013334556666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHH
Q 047392 181 EEGLVNEALATFYRMKQFRCRPDVYA 206 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~g~~p~~~t 206 (258)
..+....|+.++++|.+.|..|....
T Consensus 260 ~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 260 DPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred cCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 65667799999999999998776543
No 360
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=36.79 E-value=2e+02 Score=22.23 Aligned_cols=58 Identities=16% Similarity=0.300 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047392 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214 (258)
Q Consensus 151 a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~ 214 (258)
..+.+.-+.+.|+.| +...|.-+|+.+.+.|++.. +..+...++-+|.......+-.+
T Consensus 13 llEYirSl~~~~i~~--~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~ 70 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPV--QHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSL 70 (167)
T ss_pred HHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHh
Confidence 355666677778877 66689999999999998665 45556667777777666555333
No 361
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=36.77 E-value=2.9e+02 Score=24.10 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=52.6
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH-
Q 047392 118 FYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK- 196 (258)
Q Consensus 118 ~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~- 196 (258)
+|+-+.+...++.|..-+|+|..+- ..++++-.+..++-.+. .+-.--...+-..-.-||+-||.+.|.+.+.+-.
T Consensus 56 ~Ye~lce~~~i~~D~~~l~~m~~~n--eeki~eld~~iedaeen-lGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 56 LYEYLCESLVIKLDQDLLNSMKKAN--EEKIKELDEKIEDAEEN-LGESEVREAMLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred HHHHHHhhcceeccHHHHHHHHHhh--HHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3333444445556665555554432 22333333333333332 1110011123444455777777777777766643
Q ss_pred ---hCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHhHhCC
Q 047392 197 ---QFRCRPDVYAYNVVINALCRV-GNFNKARFLLEQMELPG 234 (258)
Q Consensus 197 ---~~g~~p~~~ty~~li~~~~~~-g~~~~a~~~f~~M~~~~ 234 (258)
..|.+.|++-+-+=+.-+.-. .-+.+-.+..+.|.+.|
T Consensus 133 ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 133 KTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 356777776654444433321 12333344444444444
No 362
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=35.95 E-value=69 Score=20.69 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=29.7
Q ss_pred HHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcC
Q 047392 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (258)
Q Consensus 215 ~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g 255 (258)
.-.|+.+.+.+++++....|.+ |.....+.+..+.-+-|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~--~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYP--PEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSS--TTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHH
Confidence 3468999999999999988866 88877777777765544
No 363
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=35.89 E-value=1.8e+02 Score=21.53 Aligned_cols=57 Identities=9% Similarity=0.040 Sum_probs=42.4
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHH
Q 047392 117 EFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK 177 (258)
Q Consensus 117 ~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~ 177 (258)
+-.+... .+.+.|+...-..-+.+|-|.+++-.|.++|+-.+.. +++ -...|-.+++
T Consensus 70 kglN~l~-~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~--~k~~Y~y~v~ 126 (149)
T KOG4077|consen 70 KGLNNLF-DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGA--QKQVYPYYVK 126 (149)
T ss_pred HHHHhhh-ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-ccc--HHHHHHHHHH
Confidence 3333333 5678999999999999999999999999999999876 333 2224555543
No 364
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=35.71 E-value=99 Score=25.01 Aligned_cols=84 Identities=12% Similarity=0.075 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHcCCCC-----CcCHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 047392 148 VKGLWDFLKEMSRRGNGE-----LVTTSTVTCLIKVLGEEG---------LVNEALATFYRMKQFRCRP-DVYAYNVVIN 212 (258)
Q Consensus 148 ~~~a~~~~~~m~~~g~~~-----~~~~~t~~~li~~~~~~g---------~~~~a~~l~~~M~~~g~~p-~~~ty~~li~ 212 (258)
.|.|..++.+|--..++. .-...-|-.+-.+|++.| +.+--.++++...+.|++- =+..|+++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 567788888875543221 113446899999999998 4667778888888888642 3467888888
Q ss_pred HHHHcCCHHHHHHHHHHhH
Q 047392 213 ALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 213 ~~~~~g~~~~a~~~f~~M~ 231 (258)
.---.-+.++..++|..|+
T Consensus 217 k~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 7777778999999998876
No 365
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=35.37 E-value=4.9e+02 Score=26.48 Aligned_cols=79 Identities=10% Similarity=0.008 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH--HHhcCChHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV--LGEEGLVNEAL 189 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~--~~~~g~~~~a~ 189 (258)
...|+.-|+...+ --+.|.-.|..|..+|.++|++..|.++|++...- .| +. +|.---.+ -|..|+..+|.
T Consensus 578 ~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP--~s-~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 578 LHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP--LS-KYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred hhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc--Hh-HHHHHHHHHHHHHhhhHHHHH
Confidence 4455555554442 12235667778888888888888888888776543 23 32 44433222 35667778887
Q ss_pred HHHHHHHh
Q 047392 190 ATFYRMKQ 197 (258)
Q Consensus 190 ~l~~~M~~ 197 (258)
..+++...
T Consensus 651 d~l~~ii~ 658 (1238)
T KOG1127|consen 651 DALGLIIY 658 (1238)
T ss_pred HHHHHHHH
Confidence 77777643
No 366
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=35.33 E-value=63 Score=16.07 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHhHhC
Q 047392 218 GNFNKARFLLEQMELP 233 (258)
Q Consensus 218 g~~~~a~~~f~~M~~~ 233 (258)
|+.+.|..+|+++...
T Consensus 1 ~~~~~~r~i~e~~l~~ 16 (33)
T smart00386 1 GDIERARKIYERALEK 16 (33)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 3455566666666543
No 367
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=34.94 E-value=1.8e+02 Score=21.12 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY-AYNVVINALCRVGNFNKARFLLEQ 229 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~-ty~~li~~~~~~g~~~~a~~~f~~ 229 (258)
-|--+=-.|++.-+ .+.++|..|...|+--... -|...-..+.+.|++++|.++|+.
T Consensus 67 RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 67 RYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34444444444333 9999999999988765544 456666777789999999999975
No 368
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=34.43 E-value=1.5e+02 Score=20.38 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 205 YAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 205 ~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.|++.|+.++-+.|.-.-|..+=+.+...|
T Consensus 65 At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 65 ASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred cHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 334455555555554444444444444433
No 369
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=34.12 E-value=4.7e+02 Score=25.82 Aligned_cols=89 Identities=8% Similarity=-0.022 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-C----------CcCHHHHHHHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-E----------LVTTSTVTCLIKVLG 180 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~----------~~~~~t~~~li~~~~ 180 (258)
.++..+.++++.+..|+.-+......+.... .|++..++.++++....+.. . ..|...+..+++.+
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL- 256 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL- 256 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 6667777777665667766666665554433 68888888887775543211 0 12333455556644
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC
Q 047392 181 EEGLVNEALATFYRMKQFRCRPD 203 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~g~~p~ 203 (258)
..|+..++++++++|...|+.+.
T Consensus 257 ~~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 257 AAGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred HcCCHHHHHHHHHHHHHhCCCHH
Confidence 44899999999999998887654
No 370
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.11 E-value=3.9e+02 Score=24.91 Aligned_cols=117 Identities=12% Similarity=0.074 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHHHH-------cCCCCCcCHHHHHHHHHHHHhcC
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIV-FARGNNVKGLWDFLKEMSR-------RGNGELVTTSTVTCLIKVLGEEG 183 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~-~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~t~~~li~~~~~~g 183 (258)
..+|.++|+...+...+.+-...=-....+ +....+++.|...|....+ .|..+ ..+.+=.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~-----a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPP-----AQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc-----cccHHHHHHhcCC
Confidence 346666666665432222111111122233 4556667777777777665 33211 2344444444432
Q ss_pred -----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHhHhCC
Q 047392 184 -----LVNEALATFYRMKQFRCRPDVYAYNVVINALCR-VGNFNKARFLLEQMELPG 234 (258)
Q Consensus 184 -----~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~-~g~~~~a~~~f~~M~~~~ 234 (258)
+.+.|..++..--+.|. |+....-..+.-... ..+...|.++|..-.+.|
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 45556666666655553 333332222222222 234555666665555444
No 371
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=33.82 E-value=68 Score=23.30 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH-HHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEM-SRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m-~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
+..|++-+++......-.++......+|..+-- -+|.+++++.+. ...|.....+ -..++....+.|-++....
T Consensus 6 ~~kAl~~L~ea~~~~~~~~~~~~~dg~IqrFE~--t~ElaWK~lK~~L~~~G~~~~~s---pr~~~r~A~~~glI~d~e~ 80 (124)
T PF08780_consen 6 FKKALSRLEEALEKYEDPLSELERDGVIQRFEF--TFELAWKTLKDYLEYEGISECNS---PRDVFREAFKAGLIDDGEI 80 (124)
T ss_dssp HHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCTSSCCTS---HHHHHHHHHHTTSSSHHHH
T ss_pred HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCcccCC---HHHHHHHHHHcCCCCCHHH
Confidence 566777777766432112223333334433321 156677777663 3446532122 2555555555555555444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
.++.....+ -++.|| +-+.|.++++.+.
T Consensus 81 Wl~m~~~RN--~tsHtY-----------de~~a~~i~~~I~ 108 (124)
T PF08780_consen 81 WLDMLEDRN--LTSHTY-----------DEETAEEIYERIP 108 (124)
T ss_dssp HHHHHHHHH--HGGGTT-----------SHHHHHHHHHTHH
T ss_pred HHHHHHHhc--cccCCC-----------CHHHHHHHHHHHH
Confidence 444443322 233333 3455666666555
No 372
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=33.79 E-value=2.6e+02 Score=22.78 Aligned_cols=102 Identities=11% Similarity=0.057 Sum_probs=57.5
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CcCHHHH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 047392 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE-LVTTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203 (258)
Q Consensus 127 ~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~t~--~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~ 203 (258)
.+.+...-+|.||--|.-...+.+|-+.|. .+.|+.+ ..|..++ ..-|......|++++|.+.....--.-+.-|
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa--~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFA--KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhc--cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 455666667776655554444444544443 3345554 3444344 3466777899999999998887643222223
Q ss_pred HHH-HHHHHH---HHHHcCCHHHHHHHHHHh
Q 047392 204 VYA-YNVVIN---ALCRVGNFNKARFLLEQM 230 (258)
Q Consensus 204 ~~t-y~~li~---~~~~~g~~~~a~~~f~~M 230 (258)
... |..+-. -..|.|..++|+++++.=
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 212 211111 234677788888777543
No 373
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=33.41 E-value=1.2e+02 Score=21.65 Aligned_cols=42 Identities=7% Similarity=0.124 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV 178 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~ 178 (258)
.+..+|+.+|+++-++| ++-=.+++.+|--. |...|+.+++.
T Consensus 71 ~~GlsYS~fi~gLkkA~-I~inRKvLadlAi~------d~~aF~~lv~~ 112 (118)
T COG0292 71 ENGLSYSRFINGLKKAG-IEIDRKVLADLAIN------DPAAFAALVEK 112 (118)
T ss_pred HcCCcHHHHHHHHHHcC-chhhHHHHHHHHhc------CHHHHHHHHHH
Confidence 34456777777777666 44445666666433 44456666653
No 374
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=33.23 E-value=3.3e+02 Score=23.83 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=35.9
Q ss_pred CHHHH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 168 TTSTV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY---NVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 168 ~~~t~--~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty---~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
|+.+| .-|.-|--|.|+..+|.+.|+.+.+. .|-...+ ..||.++....-..+...++.+--+
T Consensus 272 nvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 272 NVLVYIKRRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44444 23334445668889998888876542 2333333 3467777766666555555544443
No 375
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=32.58 E-value=2.2e+02 Score=26.54 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=45.3
Q ss_pred HHHhcC--ChHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHH
Q 047392 178 VLGEEG--LVNEALATFYRMKQ-----FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (258)
Q Consensus 178 ~~~~~g--~~~~a~~l~~~M~~-----~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~ 250 (258)
-|.... ++-+|.++++.+.. ..|.-+++.||++|++. .++...++.-|.+.|+ ..-..|++|+.-
T Consensus 587 ~Y~~~d~~nI~~a~~my~~i~e~~RlyssCfKN~iIYNaVISgI-----heqmK~lmkl~PR~~i---L~DiHF~aLL~K 658 (782)
T PF07218_consen 587 KYVEHDKSNIYEALQMYSYIAEYIRLYSSCFKNMIIYNAVISGI-----HEQMKNLMKLMPRKPI---LKDIHFEALLNK 658 (782)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH-----HHHHHHHHHhCCCcch---hHHHHHHHHhhh
Confidence 344444 67788887777754 23566888899988765 5677888888888875 444566666654
Q ss_pred H
Q 047392 251 Y 251 (258)
Q Consensus 251 ~ 251 (258)
.
T Consensus 659 ~ 659 (782)
T PF07218_consen 659 E 659 (782)
T ss_pred c
Confidence 3
No 376
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=32.00 E-value=68 Score=23.50 Aligned_cols=60 Identities=7% Similarity=-0.064 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHH-HHHHHHHHhcCChHHHHHHHHHH
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRM 195 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~-~~li~~~~~~g~~~~a~~l~~~M 195 (258)
-..+--++..++.-.|..++|.+++...+ ...+-... .-+++.|+++.+-++..++=++.
T Consensus 65 kLscvEAlAAaLyI~G~~~~A~~lL~~Fk-----WG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 65 KLSCVEALAAALYILGFKEQAEELLSKFK-----WGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhcCC-----CcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34455677777888888888888876542 21122222 34788888888887777765554
No 377
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=30.72 E-value=92 Score=20.92 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhcCChHHHHHH
Q 047392 171 TVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l 191 (258)
|...|+.++.+.|.-+-|..+
T Consensus 65 T~~~L~~aL~~~~~~diae~l 85 (86)
T cd08318 65 TPETLITALNAAGLNEIAESL 85 (86)
T ss_pred cHHHHHHHHHHcCcHHHHHhh
Confidence 444555555555544444443
No 378
>PRK12356 glutaminase; Reviewed
Probab=30.58 E-value=3.6e+02 Score=23.31 Aligned_cols=81 Identities=9% Similarity=-0.008 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CH-HHHHHHHHHHHHcCCHHHHHH
Q 047392 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DV-YAYNVVINALCRVGNFNKARF 225 (258)
Q Consensus 148 ~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p-~~-~ty~~li~~~~~~g~~~~a~~ 225 (258)
++..+++++++-.+ ....|..+|.+ =...| +.=..+...|++.|.-+ |+ .+.....+.|+-....++.-.
T Consensus 139 ~~~il~~~~~~ag~--~l~~de~v~~S----E~~t~--~RNrAlA~~lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~ 210 (319)
T PRK12356 139 WQRILDGQQRFAGR--ELALSDEVYQS----EQTTN--FHNRAIAWLLYSYGRLYCDPMEACDVYTRQCSTLVTARDLAT 210 (319)
T ss_pred HHHHHHHHHHHhCC--CCccCHHHHHH----HHhhh--HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccceeHHHHHH
Confidence 34445555555433 33336544443 22223 33444666788877654 32 223333444444555666666
Q ss_pred HHHHhHhCCCC
Q 047392 226 LLEQMELPGFR 236 (258)
Q Consensus 226 ~f~~M~~~~~~ 236 (258)
+..-+...|+.
T Consensus 211 ~~a~LAn~G~~ 221 (319)
T PRK12356 211 MGATLAAGGVN 221 (319)
T ss_pred HHHHHHcCCcC
Confidence 66666666643
No 379
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=30.01 E-value=2.4e+02 Score=25.09 Aligned_cols=131 Identities=14% Similarity=0.068 Sum_probs=66.6
Q ss_pred HHHHHHHhhCCCCCCHH---HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHH--H--HHHhcCChHHHH
Q 047392 117 EFYHWVERFFHFFHNEV---TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLI--K--VLGEEGLVNEAL 189 (258)
Q Consensus 117 ~~f~~m~~~~~~~p~~~---~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li--~--~~~~~g~~~~a~ 189 (258)
-+++.+. +.|+.|+.. +-.+++.++.-.+..++..+++... .+ +...+...- . ++...+..+...
T Consensus 100 Gv~kaL~-e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~---~~----d~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (391)
T cd07229 100 GVVKALW-LRGLLPRIITGTATGALIAALVGVHTDEELLRFLDGD---GI----DLSAFNRLRGKKSLGYSGYGWLGTLG 171 (391)
T ss_pred HHHHHHH-HcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhcc---ch----hhhhhhhhccccccccccccccchHH
Confidence 3344444 457778754 3556777766666666666666531 10 111111100 0 111111222233
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh--------CC------CCCCCCHHHHHHHHHHHHHcC
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL--------PG------FRCPPDVYTYTILISSYCKYG 255 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~--------~~------~~~~pd~~ty~~li~~~~~~g 255 (258)
..+......|...|...+--.+..+...-.+++|.+--.+... .+ ..-.||+..|+++.-+|+-.|
T Consensus 172 ~~l~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~ 251 (391)
T cd07229 172 RRIQRLLREGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSA 251 (391)
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCcc
Confidence 3444445566667777666666665555556666533222210 00 003499999999998887655
No 380
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=29.91 E-value=4.5e+02 Score=24.34 Aligned_cols=112 Identities=14% Similarity=0.119 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 047392 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193 (258)
Q Consensus 114 ~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~ 193 (258)
...++|.-+.+. .-.|+.+-.-+.|. ...|.+|++...+...... +.. ...+-.+++...-+.|++++|..+-+
T Consensus 308 as~~~~~~lr~~-~~~p~~i~l~~~i~--~~lg~ye~~~~~~s~~~~~-~~s--~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 308 ASQQLFAALRNQ-QQDPVLIQLRSVIF--SHLGYYEQAYQDISDVEKI-IGT--TDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred HHHHHHHHHHhC-CCCchhhHHHHHHH--HHhhhHHHHHHHhhchhhh-hcC--CchHHHHHHHhhhchhhHHHHHHHHH
Confidence 345667777644 33466555444443 4568899998887665443 222 44478899999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 194 ~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
.|....++ |.....+--..--..|-+|++...|++...
T Consensus 382 ~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 382 MMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 99876553 222222222223345678888888888754
No 381
>COG5210 GTPase-activating protein [General function prediction only]
Probab=29.91 E-value=1.6e+02 Score=27.01 Aligned_cols=48 Identities=10% Similarity=0.053 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCC
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~ 235 (258)
.-+++..|...|+.+...++..++..+.+.-.++.|.++++-+--.|.
T Consensus 361 ~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~ 408 (496)
T COG5210 361 DPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGS 408 (496)
T ss_pred HHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 456778888888888888888888888888888888888888877663
No 382
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=29.89 E-value=1.1e+02 Score=21.61 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=31.5
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC
Q 047392 136 KEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL 184 (258)
Q Consensus 136 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~ 184 (258)
..++..+...+..-.|.++++.|.+.|... +..|.---|+.+.+.|-
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~i--s~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRI--SLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT----HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCc--CHHHHHHHHHHHHHCCe
Confidence 356677777776777999999999887555 55555555666666664
No 383
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=29.62 E-value=2.1e+02 Score=20.44 Aligned_cols=75 Identities=20% Similarity=0.150 Sum_probs=50.7
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-----------------CCCcCHHHHHHHHHH
Q 047392 116 TEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN-----------------GELVTTSTVTCLIKV 178 (258)
Q Consensus 116 ~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-----------------~~~~~~~t~~~li~~ 178 (258)
++.|..+...++-.|..+|-..|-..++-.. ..|..++.+|.+.|. ...+ ...+...+..
T Consensus 3 ~~~y~~L~~~~~~~~~~vtl~elA~~l~cS~--Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~-~~~~~~~~~~ 79 (115)
T PF12793_consen 3 LEQYQRLWQHYGGQPVEVTLDELAELLFCSR--RNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSP-EELLEQQAEE 79 (115)
T ss_pred HHHHHHHHHHcCCCCcceeHHHHHHHhCCCH--HHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCH-HHHHHHHHHH
Confidence 3556666656665666777777776665333 347888999998871 1111 2356677788
Q ss_pred HHhcCChHHHHHHHH
Q 047392 179 LGEEGLVNEALATFY 193 (258)
Q Consensus 179 ~~~~g~~~~a~~l~~ 193 (258)
+...|+++.|.++++
T Consensus 80 ~l~~g~~~~a~~ll~ 94 (115)
T PF12793_consen 80 LLEQGKYEQALQLLD 94 (115)
T ss_pred HHHcCCHHHHHHHHH
Confidence 888899999998887
No 384
>PRK12928 lipoyl synthase; Provisional
Probab=29.59 E-value=74 Score=26.95 Aligned_cols=80 Identities=16% Similarity=0.102 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCCC-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047392 152 WDFLKEMSRRGNGE-LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230 (258)
Q Consensus 152 ~~~~~~m~~~g~~~-~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M 230 (258)
.+.+.+|.+.|... .-+..|-..+....++....++.+++++..++.| |+..+-+.+|-|+ ....++..+.++.+
T Consensus 153 ~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~g--p~i~~~s~iIvG~--GET~ed~~etl~~L 228 (290)
T PRK12928 153 RERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELA--PDIPTKSGLMLGL--GETEDEVIETLRDL 228 (290)
T ss_pred HHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhC--CCceecccEEEeC--CCCHHHHHHHHHHH
Confidence 45577777766211 0011223567777778888999999999999876 7777778888887 45677788888888
Q ss_pred HhCCC
Q 047392 231 ELPGF 235 (258)
Q Consensus 231 ~~~~~ 235 (258)
.+.++
T Consensus 229 rel~~ 233 (290)
T PRK12928 229 RAVGC 233 (290)
T ss_pred HhcCC
Confidence 87663
No 385
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=29.58 E-value=1.2e+02 Score=19.78 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=36.5
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHc
Q 047392 141 VFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY---AYNVVINALCRV 217 (258)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~---ty~~li~~~~~~ 217 (258)
..++.|+++-+..+++ .+... +. -+..+...+..|+.+ +++.+.+.|..++.. .++. +...+..
T Consensus 3 ~A~~~~~~~~~~~ll~----~~~~~--~~--~~~~l~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~ 69 (89)
T PF12796_consen 3 IAAQNGNLEILKFLLE----KGADI--NL--GNTALHYAAENGNLE----IVKLLLENGADINSQDKNGNTA-LHYAAEN 69 (89)
T ss_dssp HHHHTTTHHHHHHHHH----TTSTT--TS--SSBHHHHHHHTTTHH----HHHHHHHTTTCTT-BSTTSSBH-HHHHHHT
T ss_pred HHHHcCCHHHHHHHHH----CcCCC--CC--CCCHHHHHHHcCCHH----HHHHHHHhcccccccCCCCCCH-HHHHHHc
Confidence 3456666664444443 34333 21 123455556667754 444444466555543 2333 3345556
Q ss_pred CCHHHHHHHHHHhHhCC
Q 047392 218 GNFNKARFLLEQMELPG 234 (258)
Q Consensus 218 g~~~~a~~~f~~M~~~~ 234 (258)
|+.+ +++-+.+.|
T Consensus 70 ~~~~----~~~~Ll~~g 82 (89)
T PF12796_consen 70 GNLE----IVKLLLEHG 82 (89)
T ss_dssp THHH----HHHHHHHTT
T ss_pred CCHH----HHHHHHHcC
Confidence 6654 344444555
No 386
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.23 E-value=5.1e+02 Score=24.73 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 210 (258)
+..-|..|-.+..+.|++..|.+.|..-. | |..|+-.+.-.|+-+....+-..-++.|. .|.-
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~--------d---~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~A 727 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRAR--------D---LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLA 727 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhc--------c---hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchH
Confidence 45668888888888888888888776532 3 67788888888887777777777776663 3445
Q ss_pred HHHHHHcCCHHHHHHHHHHh
Q 047392 211 INALCRVGNFNKARFLLEQM 230 (258)
Q Consensus 211 i~~~~~~g~~~~a~~~f~~M 230 (258)
.-+|...|+++++.+++.+-
T Consensus 728 F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 728 FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHcCCHHHHHHHHHhc
Confidence 56777888888888887654
No 387
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=29.19 E-value=2e+02 Score=20.33 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 185 ~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
.++|.-|-+-....|.. ....--+=+..+...|++++|..+.+.+. .||...|-+|-.
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~------~pdlepw~ALce 78 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC------YPDLEPWLALCE 78 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC------CchHHHHHHHHH
Confidence 34555555555443311 11111122356778999999999887773 399999988754
No 388
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=28.76 E-value=1.9e+02 Score=19.68 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=25.5
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 144 ~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
..|+.++|.++++.+. +| | +. |+..++++-..|.-+-|.+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg--~--~a--F~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 48 NHGNESGARELLKRIV-QK--E--GW--FSKFLQALRETEHHELARE 87 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC--C--cH--HHHHHHHHHHcCchhhhhc
Confidence 4466777777777776 54 2 42 7777777777776555543
No 389
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=28.63 E-value=2.7e+02 Score=23.50 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 047392 173 TCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 173 ~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
...|..+...|++..|+++..+..
T Consensus 131 ~~~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 131 QSRLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 334444444555555555544443
No 390
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=28.53 E-value=59 Score=23.69 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=10.8
Q ss_pred cCChHHHHHHHHHHHHcCCCC
Q 047392 145 GNNVKGLWDFLKEMSRRGNGE 165 (258)
Q Consensus 145 ~g~~~~a~~~~~~m~~~g~~~ 165 (258)
.|+.+.|.++++.++..|..|
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep 30 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEP 30 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--H
T ss_pred CCCHHHHHHHHHHHHHCCccH
Confidence 455666666666666665443
No 391
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=28.52 E-value=2.1e+02 Score=22.13 Aligned_cols=60 Identities=8% Similarity=-0.020 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHH-HHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTST-VTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t-~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
..|-.++..++.-.|..++|.+++....= | + +-.- =.-+++.|+++.+-.+..++=++..
T Consensus 115 Lss~EAlaAaLYI~G~~deA~~lls~F~W-G--~--~FleLN~e~Le~Y~~a~~s~eVveiq~~~l 175 (179)
T COG2042 115 LSSAEALAAALYIVGFKDEASELLSKFKW-G--H--TFLELNKELLEEYSNAEDSAEVVEIQEEYL 175 (179)
T ss_pred hchHHHHHHHHHHhCcHHHHHHHHhhCcc-c--H--HHHHHhHHHHHHHHhccchHHHHHHHHHHH
Confidence 33444556666666666666666544210 1 0 1000 0235666666666555555544443
No 392
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.52 E-value=2.5e+02 Score=20.91 Aligned_cols=66 Identities=11% Similarity=0.009 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 047392 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220 (258)
Q Consensus 152 ~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~ 220 (258)
.++.+.+++.|.++.+. --.+++.+...++.-.|.+|++++.+.|-..+..|----++.+...|-+
T Consensus 6 ~~~~~~lk~~glr~T~q---R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 6 EDAIERLKEAGLRLTPQ---RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHHcCCCcCHH---HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 44566778888887554 6888999998888899999999999987767666655556777777644
No 393
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.13 E-value=73 Score=29.49 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=37.9
Q ss_pred hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCH---HH---HHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 125 FFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTT---ST---VTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 125 ~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~---~t---~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
..|++||..||++ .-++..++.-..|.+.|....-|+ .. -.-=+..-||...+++-+++|+||.+
T Consensus 261 ~LgIkpd~~TyTS--------DyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~iw~EM~k 331 (712)
T KOG1147|consen 261 LLGIKPDRVTYTS--------DYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRIWEEMKK 331 (712)
T ss_pred HhCcCcceeeech--------hhHHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHHHHHHhc
Confidence 4588898888873 345555555555555553211110 00 11123445677788899999999876
No 394
>PHA02875 ankyrin repeat protein; Provisional
Probab=28.11 E-value=99 Score=27.23 Aligned_cols=82 Identities=10% Similarity=0.033 Sum_probs=37.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCC--cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHH
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRGNGEL--VTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA--YNVVINA 213 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~t--y~~li~~ 213 (258)
.+...++.|+.+.+..+++ .|.... .+. .-.+.+...+..|+.+ +++.+.+.|..|+... -.+.++.
T Consensus 71 ~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~-~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~ 141 (413)
T PHA02875 71 ELHDAVEEGDVKAVEELLD----LGKFADDVFYK-DGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHL 141 (413)
T ss_pred HHHHHHHCCCHHHHHHHHH----cCCcccccccC-CCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHH
Confidence 4455556676665544443 232110 010 1123444445566654 3333444555554322 1244556
Q ss_pred HHHcCCHHHHHHHHH
Q 047392 214 LCRVGNFNKARFLLE 228 (258)
Q Consensus 214 ~~~~g~~~~a~~~f~ 228 (258)
.+..|+.+-+..+++
T Consensus 142 A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 142 AVMMGDIKGIELLID 156 (413)
T ss_pred HHHcCCHHHHHHHHh
Confidence 666777665554443
No 395
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=27.82 E-value=1.6e+02 Score=23.25 Aligned_cols=29 Identities=7% Similarity=0.188 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
.......+|.-|...|+.+..+++.-.|.
T Consensus 21 pp~v~k~lv~~y~~~~~~~~lE~lI~~LD 49 (196)
T PF12816_consen 21 PPEVFKALVEHYASKGRLERLEQLILHLD 49 (196)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 33456666666666666666666555554
No 396
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=27.17 E-value=1.7e+02 Score=26.59 Aligned_cols=75 Identities=9% Similarity=0.088 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc-----------cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFAR-----------GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVL 179 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~-----------~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~ 179 (258)
++++|+++.+.+.+ ...+...+....+ -+.+++-.++++.+.+.| .+| .-+.-|+.|
T Consensus 29 d~~eav~y~k~~p~-------~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g---~ad--~lp~TIDSy 96 (480)
T TIGR01503 29 DLQDAVDYHKSIPA-------HKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG---GAD--FLPSTIDAY 96 (480)
T ss_pred CHHHHHHHHHhCCc-------cccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc---CCC--ccceeeecc
Confidence 57788888776653 2233333433333 334788899999998886 235 356779999
Q ss_pred HhcCChHHHHHHHHHHHh
Q 047392 180 GEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 180 ~~~g~~~~a~~l~~~M~~ 197 (258)
-|.+++++|.+-+++=.+
T Consensus 97 TR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 97 TRQNRYDEAAVGIKESIK 114 (480)
T ss_pred cccccHHHHHHHHHhhhh
Confidence 999999999999888765
No 397
>PRK09857 putative transposase; Provisional
Probab=26.96 E-value=3.9e+02 Score=22.62 Aligned_cols=69 Identities=14% Similarity=0.098 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~ 204 (258)
..+..+++-..+.|+.++..++++.+.+.. .. .. ...-++..-+-..|.-+++.++..+|...|+.++.
T Consensus 207 ~~~~~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~-~~-e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~ 275 (292)
T PRK09857 207 RQIKGLFNYILQTGDAVRFNDFIDGVAERS-PK-HK-ESLMTIAERLRQEGEQSKALHIAKIMLESGVPLAD 275 (292)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHhC-cc-cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 335677777778888888888888887652 21 12 22335566677778778899999999999987764
No 398
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.91 E-value=1.2e+02 Score=20.46 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=25.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCC
Q 047392 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235 (258)
Q Consensus 198 ~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~ 235 (258)
.|..|+ +++-+.+|.-.++|.++.+-|.+.|-
T Consensus 31 ~gy~Pt------V~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 31 SGYNPT------VIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred CCCCch------HHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 455565 45668899999999999999999885
No 399
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=26.27 E-value=4.5e+02 Score=27.25 Aligned_cols=62 Identities=8% Similarity=-0.014 Sum_probs=38.3
Q ss_pred HHHHHHHHccCC-hHHHHHHHHHHHHc---CCCCCcCHHH-------------------HHHHHHHHHhcCChHHHHHHH
Q 047392 136 KEMGIVFARGNN-VKGLWDFLKEMSRR---GNGELVTTST-------------------VTCLIKVLGEEGLVNEALATF 192 (258)
Q Consensus 136 ~~li~~~~~~g~-~~~a~~~~~~m~~~---g~~~~~~~~t-------------------~~~li~~~~~~g~~~~a~~l~ 192 (258)
..++.++.++|- -+.|.++|+.|.+- |+. +..++. |.++++. ..|+.++...++
T Consensus 728 ~~Fi~ga~~~G~~~~~A~~if~~i~~Fa~YgFN-KSHA~AYa~iaYqtAyLKahYP~eF~aAlLs~--~~~~~~k~~~~i 804 (1170)
T PRK07374 728 GIFVEGASKRGVDEKVADELFDQMVLFAEYCFN-KSHSTAYGAVTYQTAYLKAHYPVAYMAALLTV--NAGSSDKVQRYI 804 (1170)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCcc-hHHHHHHHHHHHHHHHHhhcCHHHHHHHHhhc--CCCCchHHHHHH
Confidence 346778877774 34588888888754 332 112222 2333332 237788888889
Q ss_pred HHHHhCCC
Q 047392 193 YRMKQFRC 200 (258)
Q Consensus 193 ~~M~~~g~ 200 (258)
.++++.|+
T Consensus 805 ~Eak~~GI 812 (1170)
T PRK07374 805 SNCNSMGI 812 (1170)
T ss_pred HHHHHCCC
Confidence 99999885
No 400
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=26.16 E-value=94 Score=26.53 Aligned_cols=80 Identities=14% Similarity=0.077 Sum_probs=55.4
Q ss_pred HHHHHHHHHcCCC-CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047392 152 WDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230 (258)
Q Consensus 152 ~~~~~~m~~~g~~-~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M 230 (258)
.+.++.|.+.|.. ..-+..|...+.....+...+++.+++++..++.+ |+..+-+.+|-|+ ....++..+.++.+
T Consensus 156 ~e~l~~l~~aG~dv~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~--pgi~~~TgiIVGl--GETeee~~etl~~L 231 (302)
T TIGR00510 156 IAALDILLDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYL--PNLPTKSGIMVGL--GETNEEIKQTLKDL 231 (302)
T ss_pred HHHHHHHHHcCchhhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHhC--CCCeecceEEEEC--CCCHHHHHHHHHHH
Confidence 4567777776532 11122233456666677778999999999998863 6777778888888 45567888888888
Q ss_pred HhCCC
Q 047392 231 ELPGF 235 (258)
Q Consensus 231 ~~~~~ 235 (258)
.+.|+
T Consensus 232 relg~ 236 (302)
T TIGR00510 232 RDHGV 236 (302)
T ss_pred HhcCC
Confidence 87764
No 401
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.11 E-value=1.2e+02 Score=21.16 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=12.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 047392 174 CLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 174 ~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
.+|..|...|+.++|..-+.++.
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhC
Confidence 34445555566666666666543
No 402
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=26.08 E-value=4.2e+02 Score=22.64 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-C----------CcCHHHHHHHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-E----------LVTTSTVTCLIKVLG 180 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~----------~~~~~t~~~li~~~~ 180 (258)
.++..+......+..|+..+......++... .|++..+...++.+...+-+ . .......-.++++..
T Consensus 178 ~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~--~g~~~~a~~~lekl~~~~~~~it~~~v~~~~~~~~~~~i~~l~~ai~ 255 (355)
T TIGR02397 178 LEDIVERLKKILDKEGIKIEDEALELIARAA--DGSLRDALSLLDQLISFGNGNITYEDVNELLGLVDDEKLIELLEAIL 255 (355)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCChHHHHHHHHHHHhhcCCCCCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445555555444557666665555555433 46777777777665443211 0 001123344666665
Q ss_pred hcCChHHHHHHHHHHHhCCCCC
Q 047392 181 EEGLVNEALATFYRMKQFRCRP 202 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~g~~p 202 (258)
.|+..+|.+++++|.+.|..|
T Consensus 256 -~~~~~~a~~~~~~l~~~~~~~ 276 (355)
T TIGR02397 256 -NKDTAEALKILDEILESGVDP 276 (355)
T ss_pred -cCCHHHHHHHHHHHHHcCCCH
Confidence 489999999999999888765
No 403
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=25.95 E-value=1.5e+02 Score=20.57 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHhHhCCC
Q 047392 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN---KARFLLEQMELPGF 235 (258)
Q Consensus 184 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~---~a~~~f~~M~~~~~ 235 (258)
+.+..++.....+...+-|...|=+.+|+.+.+...+. +|..+-..+.+.|.
T Consensus 11 Dp~~GIk~~~~~~~~tv~~hcftGsdVVdWLv~~~~v~~r~EAl~las~Ll~eGy 65 (99)
T cd04445 11 DPEKGIKELNLEKDKKVFNHCFTGSCVIDWLVSNQSVRNRQEGLMLASSLLNEGY 65 (99)
T ss_pred CcccchhhhhHHHhhccccceecccHHHHHHHHhhcccchHHHHHHHHHHHHcCC
Confidence 34444444455555555666666667777766655443 56666666666664
No 404
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.79 E-value=1.9e+02 Score=28.41 Aligned_cols=77 Identities=6% Similarity=-0.041 Sum_probs=45.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 174 ~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
-++..++...+.+++..+.+...+. ++.-|-.++..|++.+.++.-.+..++..+.=.. -+...-..++..++|
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~--~~~ippl~VL~~Lak 783 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEM--QERIPPLHVLQILAK 783 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHh--cccCCHHHHHHHHhc
Confidence 3555556666666666665555432 7888899999999998877766655554331110 122223455666666
Q ss_pred cCC
Q 047392 254 YGM 256 (258)
Q Consensus 254 ~g~ 256 (258)
.+.
T Consensus 784 n~~ 786 (933)
T KOG2114|consen 784 NGT 786 (933)
T ss_pred CCc
Confidence 553
No 405
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=25.65 E-value=1.3e+02 Score=20.14 Aligned_cols=39 Identities=5% Similarity=-0.153 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 047392 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDF 154 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~ 154 (258)
+.+.+++..-.++.| ...|...|+.++.+.|.-+-|..+
T Consensus 47 eq~~~mL~~W~~r~g---~~AT~~~L~~aL~~~~~~diae~l 85 (86)
T cd08318 47 MQAKQLLVAWQDREG---SQATPETLITALNAAGLNEIAESL 85 (86)
T ss_pred HHHHHHHHHHHHhcC---ccccHHHHHHHHHHcCcHHHHHhh
Confidence 445555544444433 223455555555555555444443
No 406
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=25.35 E-value=2.4e+02 Score=19.57 Aligned_cols=97 Identities=13% Similarity=0.049 Sum_probs=52.5
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047392 136 KEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG--LVNEALATFYRMKQFRCRPDVYAYNVVINA 213 (258)
Q Consensus 136 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g--~~~~a~~l~~~M~~~g~~p~~~ty~~li~~ 213 (258)
..+|..|...++.++|.+-+.++...... .. .-..+|.++...+ .-+.+..++..+.+.|. .+=+.+..|
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~~---~~-vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~----~~~~~~~~~ 77 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQH---HE-VVKVLLTCALEEKRTYREMYSVLLSRLCQANV----ISTKQFEKG 77 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcch---HH-HHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC----cCHHHHHHH
Confidence 45777888889999999999887544222 22 3444444444443 23345556666655432 222333333
Q ss_pred HHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHH
Q 047392 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (258)
Q Consensus 214 ~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~ 250 (258)
+ +++++.|.+..+. .|+...+-+-+-+
T Consensus 78 f---------~~~~~~l~dl~~D-~P~a~~~la~~~a 104 (113)
T smart00544 78 F---------WRLLEDIEDLELD-IPNAWRNLAEFVA 104 (113)
T ss_pred H---------HHHHhhChhhhcc-cccHHHHHHHHHH
Confidence 3 3355565555442 3777665544433
No 407
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=25.27 E-value=4.5e+02 Score=22.76 Aligned_cols=71 Identities=11% Similarity=0.222 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----------cCCHH
Q 047392 152 WDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR----------VGNFN 221 (258)
Q Consensus 152 ~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~----------~g~~~ 221 (258)
.++++.|++.++.| .-+.|.=+.-.+...=.+.+.+.+++...+ |..-|-.|+..||. .|++.
T Consensus 263 ~EL~~~L~~~~i~P--qfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~ 335 (370)
T KOG4567|consen 263 EELWRHLEEKEIHP--QFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFT 335 (370)
T ss_pred HHHHHHHHhcCCCc--cchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchH
Confidence 67888888888877 666666666667777788999999999986 44448888888875 56777
Q ss_pred HHHHHHHH
Q 047392 222 KARFLLEQ 229 (258)
Q Consensus 222 ~a~~~f~~ 229 (258)
.-+++++.
T Consensus 336 ~nmkLLQ~ 343 (370)
T KOG4567|consen 336 VNMKLLQN 343 (370)
T ss_pred HHHHHHhc
Confidence 66666654
No 408
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=25.10 E-value=2e+02 Score=20.95 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHH
Q 047392 186 NEALATFYRMKQFRCRPDVYA-YNVVINALCRVGNFNKARFLLE 228 (258)
Q Consensus 186 ~~a~~l~~~M~~~g~~p~~~t-y~~li~~~~~~g~~~~a~~~f~ 228 (258)
++..++|..|...|+--.... |-..-..+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 457889999999887655544 4444455667899999999986
No 409
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=24.95 E-value=1.7e+02 Score=17.70 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=10.5
Q ss_pred HHHHcCCHHHHHHHHHHhHh
Q 047392 213 ALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 213 ~~~~~g~~~~a~~~f~~M~~ 232 (258)
|+.+.|+.+.|.+..+.+.+
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 44555555555555555554
No 410
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.92 E-value=4.4e+02 Score=22.53 Aligned_cols=111 Identities=14% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047392 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (258)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 219 (258)
......|+..+|...|....... .-+...--.|..+|...|+.+.|..++..+...--.........-|..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Q ss_pred HHHHHHHHHHhHhCCCCCCC-CHHHHHHHHHHHHHcCCCC
Q 047392 220 FNKARFLLEQMELPGFRCPP-DVYTYTILISSYCKYGMQT 258 (258)
Q Consensus 220 ~~~a~~~f~~M~~~~~~~~p-d~~ty~~li~~~~~~g~~~ 258 (258)
..+..++-.+.-.. | |...=-.+-..+...|+.|
T Consensus 219 ~~~~~~l~~~~aad-----Pdd~~aa~~lA~~~~~~g~~e 253 (304)
T COG3118 219 TPEIQDLQRRLAAD-----PDDVEAALALADQLHLVGRNE 253 (304)
T ss_pred CCCHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHH
No 411
>PHA02743 Viral ankyrin protein; Provisional
Probab=24.89 E-value=1.6e+02 Score=22.23 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=10.2
Q ss_pred ccCChHHHHHHHHHHHHcC
Q 047392 144 RGNNVKGLWDFLKEMSRRG 162 (258)
Q Consensus 144 ~~g~~~~a~~~~~~m~~~g 162 (258)
+.|+++...++++.+.+.|
T Consensus 29 ~~g~~~~l~~~~~~l~~~g 47 (166)
T PHA02743 29 RTGNIYELMEVAPFISGDG 47 (166)
T ss_pred HcCCHHHHHHHHHHHhhcc
Confidence 4566665555555554443
No 412
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=24.79 E-value=2.1e+02 Score=18.81 Aligned_cols=44 Identities=20% Similarity=0.138 Sum_probs=23.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhc
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEE 182 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~ 182 (258)
...++..+.. ++++++...+.++...|+.+ + ...+.|.....+.
T Consensus 8 i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~--~-~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 8 IEEILESCLN-GDFKEARKKLYELLVEGYSA--S-DILKQLHEVLVES 51 (89)
T ss_dssp HHHHHHHHHH-TCHHHHHHHHHHHHHTT--H--H-HHHHHHHHHHHTS
T ss_pred HHHHHHHHHh-CCHHHHHHHHHHHHHcCCCH--H-HHHHHHHHHHHHh
Confidence 3344444432 46777777777776666544 2 2455555555554
No 413
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.64 E-value=4.5e+02 Score=25.06 Aligned_cols=56 Identities=16% Similarity=0.094 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 170 ~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.-|..|=++....|++..|.+.|.+-.. |..|+-.+...|+-+....+-..-++.|
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 3466666666666666666666655443 4455555555555555555544444444
No 414
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=24.61 E-value=93 Score=19.67 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCC
Q 047392 172 VTCLIKVLGEEGLVNEALATFYRMKQFR-CRPD 203 (258)
Q Consensus 172 ~~~li~~~~~~g~~~~a~~l~~~M~~~g-~~p~ 203 (258)
|+.+.- =...-+++.|...|.+++..| ++|+
T Consensus 29 ~s~~cL-e~~~Wd~~~Al~~F~~lk~~~~IP~e 60 (63)
T smart00804 29 YSQMCL-EDNNWDYERALKNFTELKSEGSIPPE 60 (63)
T ss_pred HHHHHH-HHcCCCHHHHHHHHHHHHhcCCCChh
Confidence 554432 233557888888888888754 4444
No 415
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=24.45 E-value=3.7e+02 Score=21.54 Aligned_cols=117 Identities=11% Similarity=0.075 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
..+|...|++-. ..-+.-|....-.+-++....+++-.|...++++.+.... -.|| +--.+-..|...|+..+|+.
T Consensus 105 ~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aes 181 (251)
T COG4700 105 YHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAES 181 (251)
T ss_pred hhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHH
Confidence 458888888876 3345667776777777788889999999999998877410 1224 34455667888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHhHhC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNK----ARFLLEQMELP 233 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~----a~~~f~~M~~~ 233 (258)
-|+...+. -|+...---.-..+.+.|+.++ ..++++..++.
T Consensus 182 afe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~ 226 (251)
T COG4700 182 AFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRS 226 (251)
T ss_pred HHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence 99988874 4555432222344556666555 45566666543
No 416
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=24.38 E-value=1.7e+02 Score=21.92 Aligned_cols=30 Identities=10% Similarity=0.158 Sum_probs=16.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
.|-+.+...++++|.+.|+..+...|+-++
T Consensus 122 kgLisk~Kpild~LI~~GF~iS~~~~eeiL 151 (157)
T COG2405 122 KGLISKDKPILDELIEKGFRISRSILEEIL 151 (157)
T ss_pred cCcccchHHHHHHHHHhcCcccHHHHHHHH
Confidence 344555555555555555555555555444
No 417
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=24.23 E-value=1.9e+02 Score=29.16 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=48.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 047392 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205 (258)
Q Consensus 144 ~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ 205 (258)
......+++++|..|...|++.... ..|-..-..|.+.+.+.+|..+|+.=.+....|-..
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~la-lfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~r 150 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLA-LFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLER 150 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 4566788999999999999876443 367777777888889999999999987777677543
No 418
>COG5210 GTPase-activating protein [General function prediction only]
Probab=24.13 E-value=2.5e+02 Score=25.79 Aligned_cols=60 Identities=8% Similarity=-0.068 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047392 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212 (258)
Q Consensus 151 a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~ 212 (258)
.-++++.|++.|... ..+++.-++..+.+.-.++.|.++++-+-..|+.-....+-+++.
T Consensus 361 ~p~l~~hl~~~~~~~--~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~ 420 (496)
T COG5210 361 DPELYEHLLREGVVL--LMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILK 420 (496)
T ss_pred HHHHHHHHHHcCCch--hhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 456778888888866 888999999999999999999999999988776655554444443
No 419
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=23.76 E-value=10 Score=25.29 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=11.4
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCh
Q 047392 125 FFHFFHNEVTCKEMGIVFARGNNV 148 (258)
Q Consensus 125 ~~~~~p~~~~y~~li~~~~~~g~~ 148 (258)
++.+..+..+|.+.|++|+|.|.+
T Consensus 17 QYeLsk~~~vyRvFiNgYar~g~V 40 (88)
T PF11491_consen 17 QYELSKNEAVYRVFINGYARNGFV 40 (88)
T ss_dssp HHTTTTTTTB------TTSS--EE
T ss_pred HHHhhcccceeeeeecccccceEE
Confidence 445556778899999999999874
No 420
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=23.75 E-value=1.4e+02 Score=23.26 Aligned_cols=45 Identities=22% Similarity=0.425 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
-+++..+++.|+.+....++.++..|++.=..+.+.++|+ ..-.|
T Consensus 149 P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g 193 (214)
T PF00566_consen 149 PELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEG 193 (214)
T ss_dssp HHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHC
T ss_pred hhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcC
Confidence 3466667778999999999999999998888899999999 44445
No 421
>PF13934 ELYS: Nuclear pore complex assembly
Probab=23.70 E-value=4e+02 Score=21.56 Aligned_cols=95 Identities=13% Similarity=-0.046 Sum_probs=52.7
Q ss_pred hCCCCCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 047392 125 FFHFFHNEVTCKEMGIVFARG--NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202 (258)
Q Consensus 125 ~~~~~p~~~~y~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p 202 (258)
.+++++ .|..++.|++-- +++++|.+.+-+ ....| +- -.-++..+...|+.+.|..+++.+.-..-.+
T Consensus 72 ~f~ip~---~~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~--~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~ 141 (226)
T PF13934_consen 72 AFGIPP---KYIKFIQGFWLLDHGDFEEALELLSH---PSLIP--WF--PDKILQALLRRGDPKLALRYLRAVGPPLSSP 141 (226)
T ss_pred HhCCCH---HHHHHHHHHHHhChHhHHHHHHHhCC---CCCCc--cc--HHHHHHHHHHCCChhHHHHHHHhcCCCCCCH
Confidence 335544 466777887744 445556555522 12222 21 2257777777888888888888775322222
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 203 DVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 203 ~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..-..++.. ..+|.+.+|+.+-....+
T Consensus 142 --~~~~~~~~~-La~~~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 142 --EALTLYFVA-LANGLVTEAFSFQRSYPD 168 (226)
T ss_pred --HHHHHHHHH-HHcCCHHHHHHHHHhCch
Confidence 222333333 555777777776555443
No 422
>PHA02875 ankyrin repeat protein; Provisional
Probab=23.70 E-value=1.6e+02 Score=25.91 Aligned_cols=107 Identities=9% Similarity=-0.106 Sum_probs=57.6
Q ss_pred HHHHHHHHhhCCCCCCHHH--HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 047392 116 TEFYHWVERFFHFFHNEVT--CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193 (258)
Q Consensus 116 ~~~f~~m~~~~~~~p~~~~--y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~ 193 (258)
.++.+.+. +.|..|+... ..+.+...++.|+.+ +.+.+.+.|..|........+.+...++.|+.+.+..+++
T Consensus 15 ~~iv~~Ll-~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 15 LDIARRLL-DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHH-HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 44455555 3477776543 334555666677653 6666677776553221122345666778899887766665
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047392 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228 (258)
Q Consensus 194 ~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~ 228 (258)
.-....-..+.. -.+.+...+..|+.+-+..+++
T Consensus 90 ~~~~~~~~~~~~-g~tpL~~A~~~~~~~iv~~Ll~ 123 (413)
T PHA02875 90 LGKFADDVFYKD-GMTPLHLATILKKLDIMKLLIA 123 (413)
T ss_pred cCCcccccccCC-CCCHHHHHHHhCCHHHHHHHHh
Confidence 322111111111 2355666777888754444443
No 423
>PRK02287 hypothetical protein; Provisional
Probab=23.48 E-value=1.6e+02 Score=22.80 Aligned_cols=60 Identities=5% Similarity=-0.144 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHH-HHHHHHHHhcCChHHHHHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV-TCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~-~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
..|-.++..++.-.|..++|.++++.. ....+-..- .-+++.|+++.+-++..++=++..
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F-----~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~ 167 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKF-----KWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYL 167 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhC-----CChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 445567777888888888888887653 121121111 357888888888888887766654
No 424
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=23.12 E-value=5.6e+02 Score=23.50 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCC
Q 047392 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235 (258)
Q Consensus 172 ~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~ 235 (258)
...|+.-|--.|++.+|.+...++.-- +.-..+.+-+++.+.-+.|+-...+.++++.-..|.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 466888888999999999888776421 123567788999999999988777777777666553
No 425
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=23.05 E-value=4.2e+02 Score=27.33 Aligned_cols=21 Identities=29% Similarity=0.229 Sum_probs=10.5
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 047392 175 LIKVLGEEGLVNEALATFYRM 195 (258)
Q Consensus 175 li~~~~~~g~~~~a~~l~~~M 195 (258)
-+.+|-.+|+|++|..+..+|
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQL 991 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhh
Confidence 344555555555555554444
No 426
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=22.91 E-value=4.5e+02 Score=21.87 Aligned_cols=89 Identities=12% Similarity=0.081 Sum_probs=58.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC-----CHHHHH
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF-RCRP-----DVYAYN 208 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~-g~~p-----~~~ty~ 208 (258)
|-.++-.|+|.=++..-..+|+.. | .| ..|+.-|.+.|+++.|-..+-=+... +... +...-.
T Consensus 156 ~l~Ivv~C~RKtE~~~W~~LF~~l---g-~P-------~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al 224 (258)
T PF07064_consen 156 YLEIVVNCARKTEVRYWPYLFDYL---G-SP-------RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCAL 224 (258)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHhc---C-CH-------HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence 555666666655566566666643 3 23 47888888888888887655544432 2222 344456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 209 VVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 209 ~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
-|+......|+++-+.++..=|+.-+
T Consensus 225 ~LL~~a~~~~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 225 RLLVMALESGDWDLCFELVRFLKALD 250 (258)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 67788888999999999988777543
No 427
>PRK09462 fur ferric uptake regulator; Provisional
Probab=22.59 E-value=3.3e+02 Score=20.18 Aligned_cols=63 Identities=16% Similarity=0.105 Sum_probs=40.7
Q ss_pred HHHHHHcCCCCCcCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 047392 155 LKEMSRRGNGELVTTSTVTCLIKVLGEE-GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220 (258)
Q Consensus 155 ~~~m~~~g~~~~~~~~t~~~li~~~~~~-g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~ 220 (258)
-+.+++.|..+ +. .-..++..+... ++.-.|.+|++++.+.+...+..|----|..+...|-+
T Consensus 5 ~~~l~~~glr~--T~-qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 5 NTALKKAGLKV--TL-PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHHcCCCC--CH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34456667665 32 355666666654 45668888888888877666766655556666666654
No 428
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=22.52 E-value=5.1e+02 Score=22.45 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCChHHH
Q 047392 171 TVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a 188 (258)
+|..|+.++|..|+.+-+
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 588888899888886644
No 429
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.50 E-value=3.1e+02 Score=19.83 Aligned_cols=47 Identities=21% Similarity=0.068 Sum_probs=33.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 198 ~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
+|..|+++ +-+-+|...++|+++.+-|.+.|- .+...-+-|-.-+.+
T Consensus 61 sGy~PtVi------D~lrRC~T~EEALEVInylek~GE---It~e~A~eLr~~L~~ 107 (128)
T PF09868_consen 61 SGYNPTVI------DYLRRCKTDEEALEVINYLEKRGE---ITPEEAKELRSILVK 107 (128)
T ss_pred cCCCChHH------HHHHHhCcHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHH
Confidence 67777754 557889999999999999999885 444444444444433
No 430
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=22.16 E-value=5.7e+02 Score=24.73 Aligned_cols=71 Identities=11% Similarity=0.046 Sum_probs=48.8
Q ss_pred CCCCCcCHHHHHHHHHHHHhcCC----hHHHHHHHHHHHh----CCCCCCHH--HH-HHHHHHHHHcCCHHH---HHHHH
Q 047392 162 GNGELVTTSTVTCLIKVLGEEGL----VNEALATFYRMKQ----FRCRPDVY--AY-NVVINALCRVGNFNK---ARFLL 227 (258)
Q Consensus 162 g~~~~~~~~t~~~li~~~~~~g~----~~~a~~l~~~M~~----~g~~p~~~--ty-~~li~~~~~~g~~~~---a~~~f 227 (258)
|++. |+..|..|+.++-...+ ++++.++++-|+. .|+.+... +| .+++.-|+..|+.+- |...+
T Consensus 212 gypl--N~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~~~L 289 (677)
T PF05664_consen 212 GYPL--NVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAIQQL 289 (677)
T ss_pred CCCc--cHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5655 99999999999776544 5788888888876 46655432 22 467788999997554 55555
Q ss_pred HHhHhCC
Q 047392 228 EQMELPG 234 (258)
Q Consensus 228 ~~M~~~~ 234 (258)
++.....
T Consensus 290 ~ev~~d~ 296 (677)
T PF05664_consen 290 QEVAKDA 296 (677)
T ss_pred HHHHHhc
Confidence 5555433
No 431
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=22.02 E-value=3.7e+02 Score=20.61 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=32.0
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 047392 117 EFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG 164 (258)
Q Consensus 117 ~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 164 (258)
+.++.+....|..++......+...+....-+..+.++++.+++.|+.
T Consensus 63 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g~~ 110 (198)
T TIGR01428 63 EALRYLLGRLGLEDDESAADRLAEAYLRLPPHPDVPAGLRALKERGYR 110 (198)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCe
Confidence 444555556677666555566666666666667888888888887754
No 432
>cd00045 DED The Death Effector Domain: a protein-protein interaction domain. Death Effector Domains comprise a subfamily of the Death Domain (DD) superfamily. DED-containing proteins include Fas-Associated via Death Domain (FADD), Astrocyte phosphoprotein PEA-15, the initiator caspases (caspase-8 and -10), and FLICE-inhibitory protein (FLIP), among others. These proteins are prominent components of the programmed cell death (apoptosis) pathway. Some members also have non-apoptotic functions such as regulation of insulin signaling (DEDD and PEA15) and cell cycle progression (DEDD). DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes.
Probab=21.90 E-value=1.4e+02 Score=19.50 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=5.2
Q ss_pred HHHHHHHHHHcC
Q 047392 151 LWDFLKEMSRRG 162 (258)
Q Consensus 151 a~~~~~~m~~~g 162 (258)
+.++|.+|.+.|
T Consensus 39 ~l~lf~~Le~~~ 50 (77)
T cd00045 39 PFDLFLVLERQG 50 (77)
T ss_pred HHHHHHHHHHcC
Confidence 344444444443
No 433
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=21.38 E-value=5.1e+02 Score=22.47 Aligned_cols=70 Identities=9% Similarity=0.075 Sum_probs=48.1
Q ss_pred HHHHHHHHccCChH---HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 047392 136 KEMGIVFARGNNVK---GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208 (258)
Q Consensus 136 ~~li~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~ 208 (258)
..++..+.+.++.+ +|..+++...... + -|...=--|+..|...|-...|.++|..+.-..++-|...|.
T Consensus 184 ~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~--~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~ 256 (365)
T PF09797_consen 184 HSLLDLYSKTKDSEYLLQAIALLEHALKKS-P--HNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHL 256 (365)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHcC-C--CcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHH
Confidence 34555555566644 5666777665553 2 244455568888999999999999999998777777776653
No 434
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=21.31 E-value=1.6e+02 Score=19.78 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 047392 127 HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMS 159 (258)
Q Consensus 127 ~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 159 (258)
.+.|+...||.+++...+.+++.-|..++.+..
T Consensus 11 ~F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V 43 (83)
T PF10963_consen 11 TFNPTPTAYNKYINEMAMDNKVAPAHNYLMRIV 43 (83)
T ss_pred EeccCHHHHHHHHHHhccCCCchHHHHHHHHHc
Confidence 467889999999999888888777766665543
No 435
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=21.25 E-value=8.2e+02 Score=24.32 Aligned_cols=86 Identities=9% Similarity=0.006 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-------------CcCHHHHHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE-------------LVTTSTVTCLIKV 178 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-------------~~~~~t~~~li~~ 178 (258)
.++..+.+.++.+..|+..+......++... .|++..++.+++++... ... ..+......++++
T Consensus 181 ~~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia~-~~~~~IT~e~V~allg~~~~~~I~~lidA 257 (824)
T PRK07764 181 PEVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAG-AGPEGVTYERAVALLGVTDSALIDEAVDA 257 (824)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhh-cCCCCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 4455555566555557766666666555444 47777788877776532 111 0111223345555
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC
Q 047392 179 LGEEGLVNEALATFYRMKQFRCR 201 (258)
Q Consensus 179 ~~~~g~~~~a~~l~~~M~~~g~~ 201 (258)
.. .++...++.+++++.+.|..
T Consensus 258 L~-~~D~a~al~~l~~Li~~G~d 279 (824)
T PRK07764 258 LA-AGDGAALFGTVDRVIEAGHD 279 (824)
T ss_pred HH-cCCHHHHHHHHHHHHHcCCC
Confidence 44 46777888888888777764
No 436
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.15 E-value=4.2e+02 Score=20.96 Aligned_cols=128 Identities=12% Similarity=0.092 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHH--HHHHHhcCChHHH
Q 047392 112 INKATEFYHWVERF-FHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCL--IKVLGEEGLVNEA 188 (258)
Q Consensus 112 ~~~a~~~f~~m~~~-~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~l--i~~~~~~g~~~~a 188 (258)
.++|+.-|.++++. +|-.|...-+. +-......|+...|..-|++.-...-.|.+.- ----| -..+...|.+++.
T Consensus 74 ~d~Alaaf~~lektg~g~YpvLA~mr-~at~~a~kgdta~AV~aFdeia~dt~~P~~~r-d~ARlraa~lLvD~gsy~dV 151 (221)
T COG4649 74 TDDALAAFTDLEKTGYGSYPVLARMR-AATLLAQKGDTAAAVAAFDEIAADTSIPQIGR-DLARLRAAYLLVDNGSYDDV 151 (221)
T ss_pred chHHHHHHHHHHhcCCCcchHHHHHH-HHHHHhhcccHHHHHHHHHHHhccCCCcchhh-HHHHHHHHHHHhccccHHHH
Confidence 35999999999842 22223221111 22446778999999999999987754442210 01111 1235677888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHH
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~t 243 (258)
..-.+-+-..|-+.-...=.+|=-+--+.|++.+|..+|..+...... |.-.+
T Consensus 152 ~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~a--prnir 204 (221)
T COG4649 152 SSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQA--PRNIR 204 (221)
T ss_pred HHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccC--cHHHH
Confidence 887777765554333344445555566899999999999999876543 55443
No 437
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.05 E-value=7.3e+02 Score=23.63 Aligned_cols=89 Identities=9% Similarity=0.072 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCC----------CcCHHHHHHHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRR-GNGE----------LVTTSTVTCLIKVLG 180 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~----------~~~~~t~~~li~~~~ 180 (258)
.++..+...+.....|+..+......++... .|++..|...++.+... |-.. ..+...+-.|+++..
T Consensus 182 ~~ei~~~L~~ia~~egi~i~~~al~~La~~s--~gdlr~al~~Lekl~~y~~~~It~~~V~~~l~~~~~~~iF~L~dai~ 259 (614)
T PRK14971 182 VADIVNHLQYVASKEGITAEPEALNVIAQKA--DGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDYDYYFRLTDALL 259 (614)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCccHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3444555555545667776666555555443 57888888877765322 1001 112233445555554
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC
Q 047392 181 EEGLVNEALATFYRMKQFRCRPD 203 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~g~~p~ 203 (258)
+ ++..+|+.+++++...|..|.
T Consensus 260 ~-~~~~~al~ll~~Ll~~g~~~~ 281 (614)
T PRK14971 260 A-GKVSDSLLLFDEILNKGFDGS 281 (614)
T ss_pred c-CCHHHHHHHHHHHHHcCCCHH
Confidence 4 689999999999999887765
No 438
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=20.99 E-value=2.7e+02 Score=18.72 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHhHh
Q 047392 218 GNFNKARFLLEQMEL 232 (258)
Q Consensus 218 g~~~~a~~~f~~M~~ 232 (258)
|+.+.|..+++.+..
T Consensus 48 g~~~aa~~Ll~~L~~ 62 (88)
T cd08812 48 GNIAAAEELLDRLER 62 (88)
T ss_pred ChHHHHHHHHHHHHH
Confidence 455555555555554
No 439
>PLN03025 replication factor C subunit; Provisional
Probab=20.97 E-value=5.2e+02 Score=21.92 Aligned_cols=91 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------------CCCCCHHHHHHHHHHHHH
Q 047392 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF------------RCRPDVYAYNVVINALCR 216 (258)
Q Consensus 149 ~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~------------g~~p~~~ty~~li~~~~~ 216 (258)
+....+-....+.|+.. +......++..+. |++..|...++..... .-.+....-..+++....
T Consensus 162 ~l~~~L~~i~~~egi~i--~~~~l~~i~~~~~--gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~~ 237 (319)
T PLN03025 162 EILGRLMKVVEAEKVPY--VPEGLEAIIFTAD--GDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLK 237 (319)
T ss_pred HHHHHHHHHHHHcCCCC--CHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHHc
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCCCHHHHHH
Q 047392 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTI 246 (258)
Q Consensus 217 ~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~ 246 (258)
+++++|...+.+|...|.. |.......
T Consensus 238 -~~~~~a~~~l~~ll~~g~~--~~~Il~~l 264 (319)
T PLN03025 238 -GKFDDACDGLKQLYDLGYS--PTDIITTL 264 (319)
T ss_pred -CCHHHHHHHHHHHHHcCCC--HHHHHHHH
No 440
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=20.82 E-value=4.5e+02 Score=22.40 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=39.0
Q ss_pred CCHHHHHHHH---HHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047392 130 HNEVTCKEMG---IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198 (258)
Q Consensus 130 p~~~~y~~li---~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~ 198 (258)
|....-..|| .+|.-...+|...+++...+..- .--+...-|+-|+.-...-|++.+..-+|+-..++
T Consensus 18 ~~~~~VELLI~AH~cf~~~c~meGi~~vl~~~~~~~-~~l~~~~~~~llvRLltGi~ry~em~yifd~L~~n 88 (296)
T PF14649_consen 18 QLSCIVELLIRAHDCFTLSCSMEGIAVVLQAAKSLV-NHLAAEGDWSLLVRLLTGIGRYREMTYIFDILIEN 88 (296)
T ss_pred CccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHHH-HHHhhcccHHHHHHHHHccCcHHHHHHHHHHHHHc
Confidence 4445555666 55556666666666665433331 11112224777777777777777777777777664
No 441
>smart00031 DED Death effector domain.
Probab=20.74 E-value=1.8e+02 Score=19.13 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhC
Q 047392 186 NEALATFYRMKQF 198 (258)
Q Consensus 186 ~~a~~l~~~M~~~ 198 (258)
..+.++|.+|.+.
T Consensus 38 ~~~ldlf~~Le~~ 50 (79)
T smart00031 38 KTFLDLFSALEEQ 50 (79)
T ss_pred CCHHHHHHHHHHc
Confidence 3444444444443
No 442
>COG4865 Glutamate mutase epsilon subunit [Amino acid transport and metabolism]
Probab=20.42 E-value=5.9e+02 Score=22.34 Aligned_cols=76 Identities=11% Similarity=0.031 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc-----------cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFAR-----------GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLG 180 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~-----------~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~ 180 (258)
++.|+++.+.+ |+-.-|...|.--.+ .-.+++-.++++.+.+.| ..| ...+.|+.|-
T Consensus 32 f~dAv~FH~SL-------P~HKrF~~~lE~a~~~~k~l~Qpragv~lLdehielL~tl~eeG---qAD--lLp~tIDSyT 99 (485)
T COG4865 32 FEDAVKFHQSL-------PEHKRFSLALEKADKEGKTLSQPRAGVALLDEHIELLKTLQEEG---QAD--LLPSTIDSYT 99 (485)
T ss_pred HHHHHHHHhcC-------CchhhHHHHHHhhhhcCceecccccCcchHHHHHHHHHHHHHhc---ccc--ccchhhhhhh
Confidence 66777775544 444445555533222 234677888888888887 334 3677899999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 047392 181 EEGLVNEALATFYRMKQFR 199 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~g 199 (258)
+...+++|-..+++-.+.|
T Consensus 100 R~N~Ye~AavgL~~Sie~~ 118 (485)
T COG4865 100 RLNRYEEAAVGLKKSIEAG 118 (485)
T ss_pred hhhhHHHHHHHHHHhhhcC
Confidence 9999999988888766543
No 443
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=20.36 E-value=2.5e+02 Score=19.20 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=25.7
Q ss_pred HHHHccCChHHHHHHHHHHHHc-CCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 047392 140 IVFARGNNVKGLWDFLKEMSRR-GNGELVTTSTVTCLIKVLGEEGLVNEALATF 192 (258)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~ 192 (258)
.-|-+.|..|++.+++...+.. | ...|...|+.++-.++.-.-|..++
T Consensus 40 ~~y~r~gL~EqvyQ~L~~W~~~eg-----~~Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 40 YEYDREGLYEQAYQLLRRFIQSEG-----KKATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred hhcccccHHHHHHHHHHHHHHhcc-----ccchHHHHHHHHHHccchHHHHHHh
Confidence 3445555666666666555443 2 1135566666666666555555443
No 444
>PF13934 ELYS: Nuclear pore complex assembly
Probab=20.25 E-value=4.7e+02 Score=21.13 Aligned_cols=93 Identities=12% Similarity=0.054 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+++|++.+ . ...+.|+-. .-++.++.+.|+.+.|+.++..+.-.. .+...-+.++.. ..++.+.+|+..
T Consensus 94 ~~~A~~~L---~-~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l----~s~~~~~~~~~~-La~~~v~EAf~~ 162 (226)
T PF13934_consen 94 FEEALELL---S-HPSLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPL----SSPEALTLYFVA-LANGLVTEAFSF 162 (226)
T ss_pred HHHHHHHh---C-CCCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCC----CCHHHHHHHHHH-HHcCCHHHHHHH
Confidence 55666665 2 222333322 248888888999999999998863321 122233444444 666899999988
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVG 218 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g 218 (258)
-+...+.. ....+..++..+....
T Consensus 163 ~R~~~~~~---~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 163 QRSYPDEL---RRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHhCchhh---hHHHHHHHHHHHHHHh
Confidence 77765421 1346777777766443
No 445
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.23 E-value=83 Score=25.50 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=39.6
Q ss_pred CcccCCCCCCchhhHHHHHHHHhhcCCcccccccccccCCCCCCHhHHHHHHhcCCcc
Q 047392 1 MIVSKPLNSNHTCLVQQVLPLILKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRF 58 (258)
Q Consensus 1 ~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~l~~~~~~ 58 (258)
||.+|++...|.+.-+..+..+++++...- .....++.+.+.+-++.+.+|
T Consensus 142 ~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~-------~~fdIL~DeelRqglK~fSdW 192 (227)
T KOG0911|consen 142 MLFMKGTPEEPKCGFSRQLVGILQSHNVNY-------TIFDVLTDEELRQGLKEFSDW 192 (227)
T ss_pred EEEecCCCCcccccccHHHHHHHHHcCCCe-------eEEeccCCHHHHHHhhhhcCC
Confidence 678999999999988888888888886652 245567888888888876554
No 446
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=20.19 E-value=5.1e+02 Score=23.01 Aligned_cols=51 Identities=12% Similarity=-0.160 Sum_probs=26.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH------cCCHHHHHHHHHH
Q 047392 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR------VGNFNKARFLLEQ 229 (258)
Q Consensus 179 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~------~g~~~~a~~~f~~ 229 (258)
+-+.+++..|.++|+++......|....+-..+..+|+ .-+.++|.+.+++
T Consensus 140 l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34556666666666666655444444443333333332 3445566666653
No 447
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=20.17 E-value=5.6e+02 Score=22.58 Aligned_cols=57 Identities=14% Similarity=-0.018 Sum_probs=35.2
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh--cCChHHHHHHHHHHHh
Q 047392 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE--EGLVNEALATFYRMKQ 197 (258)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~--~g~~~~a~~l~~~M~~ 197 (258)
..+.+.+++..|.++|+++.++ +.+......|..+..||-. .-++++|.+.|+....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455778888888888888877 4442221234444444433 3456778888877655
No 448
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=20.17 E-value=2.5e+02 Score=17.88 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 148 ~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+.+.+++.....+.- +..|...|+.++-+.|..+.|.+
T Consensus 38 ~~~~~~mL~~W~~~~~----~~at~~~L~~aL~~~~~~~~a~~ 76 (79)
T cd01670 38 REQAYQLLLKWEEREG----DNATVGNLIEALREIGRRDDAAK 76 (79)
T ss_pred HHHHHHHHHHHHhccC----cCcHHHHHHHHHHHcCHHHHHHH
Confidence 3455555555544421 12355666666666665444443
No 449
>KOG3154 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.09 E-value=1.6e+02 Score=23.87 Aligned_cols=57 Identities=7% Similarity=0.054 Sum_probs=33.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNG-ELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M 195 (258)
+-.+|-.+++-+|..++|..++...+= |.. ..+| .-|++.|+++++-++..++=++.
T Consensus 149 CvEAlaA~l~I~G~~e~A~~lL~~F~w-G~~Fl~lN----~~lLd~Ya~C~~s~ev~~~qn~~ 206 (263)
T KOG3154|consen 149 CVEALAACLYICGFPEEARELLDKFKW-GHAFLELN----KDLLDEYAKCASSAEVVEVQNEF 206 (263)
T ss_pred HHHHHHhHeeeecChhHHHHHHhcCcc-hHHHHHHh----HHHHHHHHhhCCHHHHHHHHHHH
Confidence 334555566677888888877765421 110 0011 45778888888877776654443
Done!