Query 047392
Match_columns 258
No_of_seqs 196 out of 2095
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 18:45:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 2.3E-32 7.9E-37 245.7 19.4 154 92-257 29-191 (501)
2 4g26_A Pentatricopeptide repea 100.0 6.2E-31 2.1E-35 236.4 18.3 163 87-254 59-223 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 3.7E-26 1.2E-30 213.8 11.0 122 130-255 125-250 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 3.8E-24 1.3E-28 200.3 2.8 159 87-255 125-286 (1134)
5 2xpi_A Anaphase-promoting comp 99.4 1.4E-12 5E-17 118.2 15.3 138 112-257 423-566 (597)
6 2xpi_A Anaphase-promoting comp 99.4 2.7E-12 9.1E-17 116.4 15.6 141 109-257 386-532 (597)
7 1w3b_A UDP-N-acetylglucosamine 98.9 5.2E-08 1.8E-12 83.5 16.6 137 112-257 219-355 (388)
8 2vq2_A PILW, putative fimbrial 98.9 3E-07 1E-11 71.8 17.7 141 110-256 56-197 (225)
9 2y4t_A DNAJ homolog subfamily 98.8 2.7E-07 9.1E-12 80.3 17.7 136 112-256 76-226 (450)
10 2fo7_A Synthetic consensus TPR 98.8 3.4E-07 1.2E-11 65.1 15.1 118 111-234 16-133 (136)
11 1w3b_A UDP-N-acetylglucosamine 98.8 6.2E-07 2.1E-11 76.7 19.1 137 110-256 251-388 (388)
12 2fo7_A Synthetic consensus TPR 98.8 2.3E-07 7.9E-12 66.1 13.4 117 134-257 3-119 (136)
13 2y4t_A DNAJ homolog subfamily 98.8 1.8E-07 6.3E-12 81.3 15.3 138 109-257 156-311 (450)
14 1fch_A Peroxisomal targeting s 98.8 3.3E-07 1.1E-11 77.4 16.1 145 110-258 195-347 (368)
15 2ho1_A Type 4 fimbrial biogene 98.8 4.8E-07 1.6E-11 72.4 16.2 142 109-257 84-225 (252)
16 3mkr_A Coatomer subunit epsilo 98.8 3E-07 1E-11 76.5 15.3 131 111-257 116-250 (291)
17 3as5_A MAMA; tetratricopeptide 98.7 5.6E-07 1.9E-11 67.9 15.2 137 112-257 24-160 (186)
18 4eqf_A PEX5-related protein; a 98.7 2.3E-07 8E-12 78.6 14.4 149 105-257 186-343 (365)
19 2q7f_A YRRB protein; TPR, prot 98.7 1.5E-06 5E-11 68.9 18.0 138 112-258 73-210 (243)
20 2ho1_A Type 4 fimbrial biogene 98.7 1.3E-06 4.5E-11 69.8 17.3 130 109-247 118-248 (252)
21 3cv0_A Peroxisome targeting si 98.7 1E-06 3.4E-11 72.9 16.3 139 109-257 151-302 (327)
22 1xnf_A Lipoprotein NLPI; TPR, 98.7 6.8E-07 2.3E-11 72.2 14.6 118 112-233 21-140 (275)
23 2q7f_A YRRB protein; TPR, prot 98.7 9.7E-07 3.3E-11 69.9 15.1 138 111-257 38-175 (243)
24 2vq2_A PILW, putative fimbrial 98.7 2.8E-06 9.7E-11 66.2 17.6 119 110-232 91-210 (225)
25 3mkr_A Coatomer subunit epsilo 98.6 9.1E-07 3.1E-11 73.5 14.9 132 112-257 81-216 (291)
26 1na0_A Designed protein CTPR3; 98.6 5.6E-06 1.9E-10 58.0 15.9 115 132-254 9-124 (125)
27 4eqf_A PEX5-related protein; a 98.6 2.6E-06 8.8E-11 72.1 16.6 172 79-257 76-297 (365)
28 1b89_A Protein (clathrin heavy 98.6 3.3E-08 1.1E-12 86.4 4.1 116 112-256 77-192 (449)
29 1fch_A Peroxisomal targeting s 98.5 8.7E-06 3E-10 68.6 18.7 142 109-256 111-300 (368)
30 2pl2_A Hypothetical conserved 98.5 3.5E-06 1.2E-10 66.6 15.0 137 111-258 54-202 (217)
31 3uq3_A Heat shock protein STI1 98.5 2E-06 6.9E-11 68.5 13.7 145 109-257 51-223 (258)
32 2gw1_A Mitochondrial precursor 98.5 7.1E-06 2.4E-10 72.2 17.4 49 205-257 238-286 (514)
33 2vyi_A SGTA protein; chaperone 98.5 1.3E-05 4.5E-10 56.5 15.5 121 131-258 11-131 (131)
34 3as5_A MAMA; tetratricopeptide 98.5 1.3E-05 4.4E-10 60.2 15.7 117 111-233 57-173 (186)
35 1b89_A Protein (clathrin heavy 98.4 2E-08 6.8E-13 87.8 -0.4 131 91-257 34-164 (449)
36 3hym_B Cell division cycle pro 98.4 5.9E-06 2E-10 68.3 14.7 60 171-231 238-297 (330)
37 3uq3_A Heat shock protein STI1 98.4 7.8E-06 2.7E-10 65.0 14.7 135 108-248 91-253 (258)
38 3cv0_A Peroxisome targeting si 98.4 2.3E-05 7.8E-10 64.6 17.8 143 109-257 68-256 (327)
39 3hym_B Cell division cycle pro 98.4 1.6E-05 5.3E-10 65.7 16.2 138 111-257 71-209 (330)
40 3vtx_A MAMA; tetratricopeptide 98.4 4.6E-05 1.6E-09 57.8 17.4 138 111-257 20-157 (184)
41 3edt_B KLC 2, kinesin light ch 98.4 1.5E-06 5.1E-11 70.1 8.8 153 102-257 14-185 (283)
42 2pl2_A Hypothetical conserved 98.3 3E-05 1E-09 61.1 15.8 137 111-257 20-167 (217)
43 2lni_A Stress-induced-phosphop 98.3 2.4E-05 8.3E-10 55.5 13.8 120 129-256 13-133 (133)
44 3nf1_A KLC 1, kinesin light ch 98.3 5.2E-06 1.8E-10 68.0 11.3 121 112-232 85-223 (311)
45 3fp2_A TPR repeat-containing p 98.3 2.1E-05 7.1E-10 69.8 16.0 139 109-257 256-394 (537)
46 3u4t_A TPR repeat-containing p 98.3 2.4E-05 8.3E-10 63.0 15.1 137 110-255 51-190 (272)
47 3ieg_A DNAJ homolog subfamily 98.3 3.4E-05 1.2E-09 64.2 16.3 143 109-257 50-204 (359)
48 1xnf_A Lipoprotein NLPI; TPR, 98.3 1.7E-05 5.9E-10 63.8 13.7 116 111-233 58-173 (275)
49 3ieg_A DNAJ homolog subfamily 98.3 4.5E-05 1.6E-09 63.5 16.6 119 109-234 84-218 (359)
50 3edt_B KLC 2, kinesin light ch 98.3 8.9E-06 3.1E-10 65.4 11.6 121 112-232 59-197 (283)
51 4gyw_A UDP-N-acetylglucosamine 98.2 7.6E-05 2.6E-09 69.7 18.6 138 111-258 24-162 (723)
52 4i17_A Hypothetical protein; T 98.2 0.00011 3.9E-09 57.7 17.1 135 111-255 22-167 (228)
53 1elr_A TPR2A-domain of HOP; HO 98.2 2.9E-05 9.9E-10 54.8 12.2 114 132-252 4-123 (131)
54 2gw1_A Mitochondrial precursor 98.2 2E-05 6.9E-10 69.3 13.0 138 110-257 251-388 (514)
55 2ond_A Cleavage stimulation fa 98.2 3.8E-05 1.3E-09 63.8 14.0 138 111-257 114-257 (308)
56 1hh8_A P67PHOX, NCF-2, neutrop 98.2 0.00021 7.1E-09 55.3 17.4 116 111-234 21-151 (213)
57 1elw_A TPR1-domain of HOP; HOP 98.2 0.00016 5.4E-09 49.8 14.9 99 132-234 4-102 (118)
58 3nf1_A KLC 1, kinesin light ch 98.2 1.5E-05 5.2E-10 65.2 10.9 144 112-257 43-211 (311)
59 3vtx_A MAMA; tetratricopeptide 98.1 0.00014 4.9E-09 55.0 15.4 125 110-244 53-177 (184)
60 3fp2_A TPR repeat-containing p 98.1 5.7E-05 2E-09 66.9 14.7 136 111-257 217-360 (537)
61 4ga2_A E3 SUMO-protein ligase 98.1 4.2E-05 1.4E-09 56.7 11.2 140 106-256 7-149 (150)
62 2kck_A TPR repeat; tetratricop 98.1 6.2E-05 2.1E-09 51.5 11.5 99 132-234 6-107 (112)
63 2ond_A Cleavage stimulation fa 98.1 0.00018 6.1E-09 59.7 16.3 138 112-257 80-219 (308)
64 4gco_A Protein STI-1; structur 98.1 0.00016 5.4E-09 51.9 13.8 101 134-242 15-115 (126)
65 3u4t_A TPR repeat-containing p 98.1 0.00042 1.4E-08 55.5 17.5 132 111-248 18-149 (272)
66 4abn_A Tetratricopeptide repea 98.1 4.5E-05 1.5E-09 67.6 12.4 133 113-256 120-273 (474)
67 3mv2_B Coatomer subunit epsilo 98.0 7.3E-05 2.5E-09 62.4 12.6 133 116-257 86-227 (310)
68 2e2e_A Formate-dependent nitri 98.0 8.9E-05 3E-09 55.9 12.2 117 112-234 26-145 (177)
69 3gyz_A Chaperone protein IPGC; 98.0 0.00013 4.4E-09 54.4 12.7 103 132-242 36-138 (151)
70 3upv_A Heat shock protein STI1 98.0 0.00038 1.3E-08 49.2 14.4 96 133-232 5-100 (126)
71 2dba_A Smooth muscle cell asso 98.0 0.00044 1.5E-08 49.8 15.1 100 130-234 26-129 (148)
72 1ouv_A Conserved hypothetical 98.0 0.0015 5.3E-08 52.6 19.8 127 110-253 92-230 (273)
73 1ouv_A Conserved hypothetical 98.0 0.001 3.6E-08 53.6 18.7 128 109-253 55-194 (273)
74 2vsy_A XCC0866; transferase, g 98.0 0.00016 5.6E-09 65.2 14.8 132 113-254 6-138 (568)
75 3q49_B STIP1 homology and U bo 98.0 0.00039 1.3E-08 49.7 14.1 99 130-232 7-105 (137)
76 3mv2_B Coatomer subunit epsilo 97.9 0.00062 2.1E-08 56.8 16.3 140 110-256 114-270 (310)
77 2vgx_A Chaperone SYCD; alterna 97.9 0.00021 7.2E-09 52.7 12.1 98 132-233 21-118 (148)
78 4abn_A Tetratricopeptide repea 97.9 0.00016 5.4E-09 64.1 13.4 132 112-254 84-226 (474)
79 2xcb_A PCRH, regulatory protei 97.9 0.00018 6.2E-09 52.4 11.5 96 134-233 20-115 (142)
80 2h6f_A Protein farnesyltransfe 97.9 0.0004 1.4E-08 59.8 15.2 136 112-256 113-250 (382)
81 1a17_A Serine/threonine protei 97.9 0.00038 1.3E-08 51.2 13.3 116 109-230 26-143 (166)
82 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00024 8.2E-09 52.9 12.2 100 131-234 10-109 (164)
83 2xev_A YBGF; tetratricopeptide 97.9 0.00071 2.4E-08 47.7 14.1 95 138-234 8-106 (129)
84 1a17_A Serine/threonine protei 97.9 0.00055 1.9E-08 50.3 13.9 98 133-234 14-111 (166)
85 1na0_A Designed protein CTPR3; 97.9 0.00074 2.5E-08 46.7 13.8 97 112-214 25-121 (125)
86 3qou_A Protein YBBN; thioredox 97.9 0.00034 1.2E-08 57.5 13.6 138 110-258 131-272 (287)
87 4i17_A Hypothetical protein; T 97.9 0.00061 2.1E-08 53.4 14.6 102 130-234 5-106 (228)
88 3qky_A Outer membrane assembly 97.8 0.0009 3.1E-08 53.7 15.4 138 111-254 30-198 (261)
89 2ooe_A Cleavage stimulation fa 97.8 0.00043 1.5E-08 61.9 14.6 74 181-256 403-478 (530)
90 1hh8_A P67PHOX, NCF-2, neutrop 97.8 0.00057 2E-08 52.8 13.7 116 135-257 9-137 (213)
91 4gyw_A UDP-N-acetylglucosamine 97.8 0.00041 1.4E-08 64.8 14.4 118 132-257 9-127 (723)
92 4gcn_A Protein STI-1; structur 97.8 0.00062 2.1E-08 48.7 12.5 109 132-247 8-122 (127)
93 2r5s_A Uncharacterized protein 97.7 0.00035 1.2E-08 52.8 10.8 136 111-258 21-161 (176)
94 2vyi_A SGTA protein; chaperone 97.7 0.0014 4.7E-08 45.7 13.1 103 112-220 28-130 (131)
95 2vsy_A XCC0866; transferase, g 97.7 0.0015 5.1E-08 58.8 16.3 118 111-234 38-158 (568)
96 1hxi_A PEX5, peroxisome target 97.7 0.00078 2.7E-08 47.7 11.5 96 135-234 20-115 (121)
97 2ooe_A Cleavage stimulation fa 97.7 0.001 3.5E-08 59.4 14.4 137 112-257 302-441 (530)
98 3u3w_A Transcriptional activat 97.6 0.0016 5.3E-08 53.5 14.3 142 112-256 91-251 (293)
99 2qfc_A PLCR protein; TPR, HTH, 97.6 0.0031 1.1E-07 51.6 15.7 146 111-257 90-252 (293)
100 3urz_A Uncharacterized protein 97.6 0.0029 1E-07 49.1 14.6 126 112-249 20-198 (208)
101 3k9i_A BH0479 protein; putativ 97.6 0.0002 6.8E-09 50.3 6.9 106 145-252 3-108 (117)
102 2yhc_A BAMD, UPF0169 lipoprote 97.6 0.0029 9.9E-08 49.7 14.3 140 111-257 19-200 (225)
103 2h6f_A Protein farnesyltransfe 97.6 0.0022 7.5E-08 55.2 14.6 119 133-258 98-217 (382)
104 3urz_A Uncharacterized protein 97.5 0.0025 8.5E-08 49.5 13.6 107 138-252 10-133 (208)
105 2lni_A Stress-induced-phosphop 97.5 0.0027 9.2E-08 44.5 12.6 101 112-218 32-132 (133)
106 1p5q_A FKBP52, FK506-binding p 97.5 0.0021 7.2E-08 54.1 13.8 117 132-255 147-278 (336)
107 1p5q_A FKBP52, FK506-binding p 97.5 0.0038 1.3E-07 52.5 15.3 115 110-231 161-292 (336)
108 1qqe_A Vesicular transport pro 97.5 0.004 1.4E-07 51.0 14.9 123 111-233 92-228 (292)
109 3rkv_A Putative peptidylprolyl 97.5 0.0027 9.3E-08 46.9 12.6 111 133-248 12-138 (162)
110 4ga2_A E3 SUMO-protein ligase 97.5 0.00033 1.1E-08 51.7 7.4 107 143-257 8-115 (150)
111 2c2l_A CHIP, carboxy terminus 97.5 0.0038 1.3E-07 51.0 14.5 98 131-232 3-100 (281)
112 3gw4_A Uncharacterized protein 97.4 0.0014 4.9E-08 49.8 10.8 100 132-231 26-134 (203)
113 1qqe_A Vesicular transport pro 97.4 0.0015 5.2E-08 53.6 11.5 145 112-257 53-215 (292)
114 2fbn_A 70 kDa peptidylprolyl i 97.4 0.0071 2.4E-07 46.2 14.4 113 134-252 40-167 (198)
115 2pzi_A Probable serine/threoni 97.4 0.0015 5.1E-08 60.6 12.1 116 112-232 407-528 (681)
116 3ulq_A Response regulator aspa 97.3 0.0035 1.2E-07 53.2 12.6 147 110-257 117-280 (383)
117 2e2e_A Formate-dependent nitri 97.3 0.0012 4.1E-08 49.5 8.7 107 143-257 21-131 (177)
118 3q15_A PSP28, response regulat 97.3 0.0038 1.3E-07 52.9 12.5 142 112-256 117-276 (378)
119 3u3w_A Transcriptional activat 97.3 0.017 5.9E-07 47.1 16.0 121 111-231 130-264 (293)
120 1elr_A TPR2A-domain of HOP; HO 97.3 0.0029 9.8E-08 44.1 9.8 98 111-212 19-120 (131)
121 3qky_A Outer membrane assembly 97.3 0.01 3.5E-07 47.4 14.3 120 110-234 66-225 (261)
122 2fbn_A 70 kDa peptidylprolyl i 97.3 0.0063 2.1E-07 46.5 12.5 120 111-234 53-187 (198)
123 2pzi_A Probable serine/threoni 97.2 0.0022 7.4E-08 59.4 11.1 136 109-255 446-582 (681)
124 3rjv_A Putative SEL1 repeat pr 97.2 0.01 3.4E-07 46.2 13.4 131 109-253 31-174 (212)
125 2qfc_A PLCR protein; TPR, HTH, 97.2 0.0044 1.5E-07 50.7 11.8 121 111-231 130-264 (293)
126 3rjv_A Putative SEL1 repeat pr 97.2 0.045 1.5E-06 42.4 17.2 117 111-234 68-198 (212)
127 1wao_1 Serine/threonine protei 97.2 0.0053 1.8E-07 54.4 13.0 121 102-228 12-134 (477)
128 1elw_A TPR1-domain of HOP; HOP 97.2 0.02 6.7E-07 38.7 13.4 83 111-198 19-101 (118)
129 2kck_A TPR repeat; tetratricop 97.2 0.0022 7.4E-08 43.4 8.3 82 171-257 8-93 (112)
130 2l6j_A TPR repeat-containing p 97.2 0.0078 2.7E-07 40.7 11.2 64 131-197 3-66 (111)
131 3ro2_A PINS homolog, G-protein 97.2 0.00094 3.2E-08 54.6 7.3 146 112-257 159-319 (338)
132 3sf4_A G-protein-signaling mod 97.1 0.002 6.9E-08 54.4 9.5 145 112-257 163-323 (406)
133 3n71_A Histone lysine methyltr 97.1 0.0054 1.8E-07 54.6 12.4 122 112-233 325-464 (490)
134 3ulq_A Response regulator aspa 97.1 0.0089 3E-07 50.6 13.2 121 112-232 159-292 (383)
135 2l6j_A TPR repeat-containing p 97.1 0.0008 2.7E-08 45.9 5.5 85 168-257 3-94 (111)
136 3ro3_A PINS homolog, G-protein 97.1 0.0055 1.9E-07 44.1 10.4 121 112-232 25-157 (164)
137 1wao_1 Serine/threonine protei 97.1 0.0061 2.1E-07 54.0 12.4 91 140-234 14-104 (477)
138 3sf4_A G-protein-signaling mod 97.1 0.0043 1.5E-07 52.4 10.9 147 109-256 200-362 (406)
139 4gco_A Protein STI-1; structur 97.1 0.012 4.2E-07 41.7 11.8 88 110-204 27-114 (126)
140 3ro2_A PINS homolog, G-protein 97.1 0.003 1E-07 51.4 9.6 125 109-233 196-332 (338)
141 4a1s_A PINS, partner of inscut 97.0 0.0016 5.6E-08 55.4 7.7 63 134-196 88-153 (411)
142 1ihg_A Cyclophilin 40; ppiase 97.0 0.014 4.9E-07 49.7 13.6 115 133-253 224-353 (370)
143 3q15_A PSP28, response regulat 97.0 0.0068 2.3E-07 51.4 11.2 122 112-233 157-290 (378)
144 1kt0_A FKBP51, 51 kDa FK506-bi 97.0 0.017 5.9E-07 50.6 14.1 115 132-253 268-397 (457)
145 2dba_A Smooth muscle cell asso 97.0 0.033 1.1E-06 39.5 13.3 81 112-198 44-128 (148)
146 4f3v_A ESX-1 secretion system 96.9 0.0066 2.2E-07 49.9 10.3 126 112-247 118-247 (282)
147 2kat_A Uncharacterized protein 96.9 0.0099 3.4E-07 41.0 9.9 79 114-197 3-81 (115)
148 2xev_A YBGF; tetratricopeptide 96.9 0.025 8.5E-07 39.4 12.2 90 111-205 17-110 (129)
149 3upv_A Heat shock protein STI1 96.9 0.02 6.9E-07 39.9 11.5 82 111-197 19-100 (126)
150 1na3_A Designed protein CTPR2; 96.9 0.019 6.4E-07 37.2 10.7 79 170-253 10-89 (91)
151 4a1s_A PINS, partner of inscut 96.9 0.0084 2.9E-07 50.9 11.1 100 132-231 223-330 (411)
152 3k9i_A BH0479 protein; putativ 96.9 0.0026 9.1E-08 44.3 6.6 99 112-214 6-107 (117)
153 2xcb_A PCRH, regulatory protei 96.9 0.016 5.4E-07 41.7 11.0 83 111-198 33-115 (142)
154 3gw4_A Uncharacterized protein 96.9 0.013 4.6E-07 44.2 11.1 121 112-232 42-175 (203)
155 3gyz_A Chaperone protein IPGC; 96.8 0.015 5.1E-07 43.0 10.8 87 112-205 52-138 (151)
156 3sz7_A HSC70 cochaperone (SGT) 96.8 0.035 1.2E-06 40.8 12.9 83 111-198 26-108 (164)
157 2ifu_A Gamma-SNAP; membrane fu 96.8 0.0079 2.7E-07 49.6 10.1 98 133-231 117-222 (307)
158 3q49_B STIP1 homology and U bo 96.8 0.017 5.9E-07 40.7 10.8 86 168-257 8-93 (137)
159 2yhc_A BAMD, UPF0169 lipoprote 96.8 0.016 5.4E-07 45.3 11.3 99 134-234 6-126 (225)
160 1hz4_A MALT regulatory protein 96.8 0.026 8.8E-07 47.4 13.2 145 112-257 30-190 (373)
161 2ifu_A Gamma-SNAP; membrane fu 96.8 0.0055 1.9E-07 50.6 8.8 113 110-226 129-254 (307)
162 1hz4_A MALT regulatory protein 96.8 0.029 1E-06 47.1 13.6 147 110-256 107-268 (373)
163 3qou_A Protein YBBN; thioredox 96.8 0.012 4E-07 48.2 10.8 119 130-257 115-235 (287)
164 2r5s_A Uncharacterized protein 96.8 0.014 4.7E-07 43.7 10.4 115 112-232 56-172 (176)
165 2xm6_A Protein corresponding t 96.7 0.17 5.7E-06 44.4 18.6 110 112-233 95-216 (490)
166 2vgx_A Chaperone SYCD; alterna 96.7 0.022 7.5E-07 41.6 10.9 81 112-197 37-117 (148)
167 1klx_A Cysteine rich protein B 96.7 0.096 3.3E-06 37.6 15.6 111 111-235 10-128 (138)
168 2xm6_A Protein corresponding t 96.7 0.29 9.9E-06 42.8 20.3 113 110-234 129-253 (490)
169 1na3_A Designed protein CTPR2; 96.7 0.04 1.4E-06 35.6 10.8 81 132-216 9-89 (91)
170 3n71_A Histone lysine methyltr 96.6 0.013 4.3E-07 52.2 10.5 91 141-231 318-420 (490)
171 2kat_A Uncharacterized protein 96.6 0.036 1.2E-06 38.0 11.0 98 149-251 2-99 (115)
172 1kt0_A FKBP51, 51 kDa FK506-bi 96.6 0.033 1.1E-06 48.8 13.1 118 111-232 283-414 (457)
173 3ma5_A Tetratricopeptide repea 96.6 0.013 4.4E-07 39.6 8.2 63 131-196 6-68 (100)
174 1xi4_A Clathrin heavy chain; a 96.6 0.017 5.8E-07 57.2 11.7 95 144-256 1088-1182(1630)
175 2if4_A ATFKBP42; FKBP-like, al 96.6 0.019 6.6E-07 48.2 10.9 95 134-233 181-293 (338)
176 3ro3_A PINS homolog, G-protein 96.6 0.019 6.5E-07 41.1 9.6 124 133-257 10-145 (164)
177 3qwp_A SET and MYND domain-con 96.6 0.013 4.5E-07 51.1 9.9 94 138-231 293-398 (429)
178 4e6h_A MRNA 3'-END-processing 96.5 0.028 9.5E-07 52.0 12.2 143 110-257 392-557 (679)
179 1hxi_A PEX5, peroxisome target 96.5 0.025 8.6E-07 39.7 9.4 83 111-198 32-114 (121)
180 3qww_A SET and MYND domain-con 96.4 0.016 5.4E-07 50.7 9.6 89 144-232 310-410 (433)
181 1xi4_A Clathrin heavy chain; a 96.4 0.055 1.9E-06 53.7 13.9 65 112-187 1121-1185(1630)
182 4gcn_A Protein STI-1; structur 96.3 0.058 2E-06 38.1 10.7 95 110-208 22-120 (127)
183 2if4_A ATFKBP42; FKBP-like, al 96.3 0.026 8.7E-07 47.4 10.1 115 112-234 195-329 (338)
184 3ma5_A Tetratricopeptide repea 96.3 0.028 9.6E-07 37.8 8.5 87 168-256 6-92 (100)
185 2hr2_A Hypothetical protein; a 96.3 0.099 3.4E-06 39.0 12.0 112 135-250 14-151 (159)
186 4g1t_A Interferon-induced prot 96.2 0.013 4.4E-07 50.8 7.9 130 112-244 316-469 (472)
187 4g1t_A Interferon-induced prot 96.2 0.14 4.7E-06 44.2 14.3 101 130-232 92-203 (472)
188 4e6h_A MRNA 3'-END-processing 96.1 0.056 1.9E-06 50.0 12.0 133 109-249 447-582 (679)
189 4f3v_A ESX-1 secretion system 95.6 0.054 1.8E-06 44.4 8.4 111 137-256 107-223 (282)
190 1ihg_A Cyclophilin 40; ppiase 95.4 0.17 5.9E-06 42.9 11.5 91 131-225 272-362 (370)
191 2c2l_A CHIP, carboxy terminus 95.3 0.19 6.4E-06 40.7 11.0 85 168-257 3-88 (281)
192 3qww_A SET and MYND domain-con 95.2 0.15 5E-06 44.5 10.6 86 112-197 314-410 (433)
193 3rkv_A Putative peptidylprolyl 95.2 0.25 8.5E-06 35.9 10.5 69 132-205 63-131 (162)
194 2kc7_A BFR218_protein; tetratr 95.2 0.089 3.1E-06 34.7 7.4 57 139-198 7-64 (99)
195 4b4t_Q 26S proteasome regulato 95.2 0.18 6.2E-06 42.9 11.1 122 134-256 57-190 (434)
196 3ly7_A Transcriptional activat 94.6 1.8 6.2E-05 36.8 16.6 73 168-246 276-348 (372)
197 2kc7_A BFR218_protein; tetratr 94.6 0.15 5.2E-06 33.5 7.3 59 175-234 6-65 (99)
198 1pc2_A Mitochondria fission pr 94.6 0.34 1.1E-05 35.7 9.5 64 168-232 31-99 (152)
199 1zu2_A Mitochondrial import re 94.6 0.12 4.2E-06 38.4 7.2 92 112-210 18-130 (158)
200 3qwp_A SET and MYND domain-con 94.5 0.29 1E-05 42.5 10.5 87 111-197 302-399 (429)
201 3mkq_A Coatomer beta'-subunit; 94.1 0.52 1.8E-05 43.6 12.1 85 130-231 679-763 (814)
202 2uy1_A Cleavage stimulation fa 93.7 1.6 5.5E-05 38.5 13.9 110 111-232 301-412 (493)
203 3dra_A Protein farnesyltransfe 93.7 1.5 5.2E-05 36.2 12.9 102 112-219 126-235 (306)
204 4b4t_Q 26S proteasome regulato 93.7 0.94 3.2E-05 38.3 12.1 123 109-232 68-203 (434)
205 1dce_A Protein (RAB geranylger 93.6 3.9 0.00013 36.8 16.6 132 113-253 46-190 (567)
206 2hr2_A Hypothetical protein; a 93.6 0.63 2.2E-05 34.6 9.3 97 111-211 26-149 (159)
207 3e4b_A ALGK; tetratricopeptide 93.3 2.2 7.6E-05 36.9 13.9 108 112-231 195-314 (452)
208 3dra_A Protein farnesyltransfe 93.1 3.2 0.00011 34.2 15.9 137 111-256 84-235 (306)
209 3e4b_A ALGK; tetratricopeptide 92.9 1.7 5.9E-05 37.6 12.7 110 113-234 162-281 (452)
210 1klx_A Cysteine rich protein B 92.3 2.1 7.3E-05 30.3 12.2 80 112-200 41-128 (138)
211 2v5f_A Prolyl 4-hydroxylase su 92.3 1.1 3.9E-05 30.0 8.6 66 132-197 5-74 (104)
212 1v54_E Cytochrome C oxidase po 91.9 1.4 4.7E-05 30.0 8.2 61 186-249 27-87 (109)
213 1dce_A Protein (RAB geranylger 91.9 5.2 0.00018 35.9 14.7 135 112-256 89-241 (567)
214 1zu2_A Mitochondrial import re 91.5 1.2 4.1E-05 33.0 8.4 102 143-253 13-136 (158)
215 2ff4_A Probable regulatory pro 91.5 1.2 4.2E-05 38.0 9.8 69 135-206 174-247 (388)
216 3q7a_A Farnesyltransferase alp 91.3 5.9 0.0002 33.3 14.7 136 112-256 105-257 (349)
217 3mkq_B Coatomer subunit alpha; 90.9 4 0.00014 30.7 13.2 95 112-230 21-115 (177)
218 3bee_A Putative YFRE protein; 90.6 2.5 8.7E-05 27.8 9.5 63 171-234 8-73 (93)
219 1wy6_A Hypothetical protein ST 90.3 3.9 0.00013 29.6 10.5 67 169-236 91-157 (172)
220 2y69_E Cytochrome C oxidase su 89.7 2.4 8.4E-05 30.4 8.2 60 187-249 71-130 (152)
221 2uy1_A Cleavage stimulation fa 89.4 5.2 0.00018 35.2 12.2 92 133-230 287-380 (493)
222 2v5f_A Prolyl 4-hydroxylase su 89.2 3.5 0.00012 27.5 9.2 71 168-242 4-80 (104)
223 2ff4_A Probable regulatory pro 88.6 2.5 8.7E-05 36.0 9.4 70 171-243 173-247 (388)
224 3ly7_A Transcriptional activat 88.6 5.5 0.00019 33.8 11.2 74 129-208 274-347 (372)
225 3q7a_A Farnesyltransferase alp 87.8 11 0.00038 31.6 14.9 133 114-255 72-215 (349)
226 1pc2_A Mitochondria fission pr 87.7 5.2 0.00018 29.3 9.3 87 112-203 14-103 (152)
227 1wy6_A Hypothetical protein ST 87.3 4.5 0.00015 29.3 8.2 68 131-201 90-157 (172)
228 3bee_A Putative YFRE protein; 87.1 4.7 0.00016 26.5 10.1 67 130-199 4-73 (93)
229 4gns_B Protein CSD3, chitin bi 86.4 7 0.00024 36.5 11.4 38 216-257 349-387 (754)
230 1nzn_A CGI-135 protein, fissio 86.3 6.4 0.00022 27.8 8.7 84 146-233 15-103 (126)
231 3dss_A Geranylgeranyl transfer 85.4 15 0.00051 30.5 13.9 127 112-247 90-233 (331)
232 3mkq_A Coatomer beta'-subunit; 85.0 3.2 0.00011 38.3 8.6 30 168-197 680-709 (814)
233 3u64_A Protein TP_0956; tetrat 84.8 7.3 0.00025 31.9 9.5 122 84-210 149-283 (301)
234 3u64_A Protein TP_0956; tetrat 84.2 11 0.00038 30.8 10.4 112 132-247 154-283 (301)
235 3mkq_B Coatomer subunit alpha; 83.8 12 0.0004 28.1 10.1 74 143-233 16-89 (177)
236 4h7y_A Dual specificity protei 83.5 11 0.00038 27.6 9.7 115 131-251 12-138 (161)
237 1v54_E Cytochrome C oxidase po 81.2 8.7 0.0003 26.1 7.1 36 126-161 39-74 (109)
238 3esl_A Checkpoint serine/threo 75.9 25 0.00084 27.0 9.2 87 112-203 60-149 (202)
239 2y69_E Cytochrome C oxidase su 73.0 16 0.00054 26.3 6.9 30 168-197 87-116 (152)
240 3dss_A Geranylgeranyl transfer 71.2 43 0.0015 27.7 16.6 131 113-253 47-191 (331)
241 4b4t_R RPN7, 26S proteasome re 70.5 50 0.0017 28.2 12.2 98 134-233 133-237 (429)
242 1zbp_A Hypothetical protein VP 69.9 18 0.00061 29.2 7.5 25 208-232 102-128 (273)
243 2uwj_G Type III export protein 68.2 25 0.00085 23.8 7.8 88 146-246 20-107 (115)
244 2nsz_A Programmed cell death p 68.0 24 0.0008 24.8 7.2 66 134-202 9-76 (129)
245 2p58_C Putative type III secre 67.5 26 0.00089 23.8 8.7 88 146-246 21-108 (116)
246 4fhn_B Nucleoporin NUP120; pro 66.3 1E+02 0.0035 30.1 14.3 115 138-257 848-987 (1139)
247 1zbp_A Hypothetical protein VP 64.6 20 0.0007 28.8 6.8 72 139-213 4-77 (273)
248 2nsz_A Programmed cell death p 64.3 34 0.0012 24.0 8.0 25 172-196 10-34 (129)
249 1k1a_A B-cell lymphoma 3-encod 62.5 11 0.00039 28.6 5.1 17 178-194 85-101 (241)
250 4gns_B Protein CSD3, chitin bi 62.0 54 0.0018 30.6 10.1 51 179-231 347-398 (754)
251 2ion_A PDCD4, programmed cell 60.1 21 0.00073 25.9 5.8 65 134-201 11-77 (152)
252 2ion_A PDCD4, programmed cell 59.7 32 0.0011 25.0 6.7 51 110-162 23-75 (152)
253 2wvi_A Mitotic checkpoint seri 57.1 38 0.0013 25.0 6.8 54 150-204 78-131 (164)
254 4a1g_A Mitotic checkpoint seri 55.1 58 0.002 23.7 8.7 51 151-202 84-134 (152)
255 4b4t_R RPN7, 26S proteasome re 54.4 42 0.0014 28.7 7.7 85 148-232 110-196 (429)
256 2fu4_A Ferric uptake regulatio 54.1 37 0.0013 21.2 5.9 46 173-218 20-66 (83)
257 2fe3_A Peroxide operon regulat 53.1 58 0.002 23.1 8.0 46 173-218 25-70 (145)
258 2xig_A Ferric uptake regulatio 52.5 39 0.0013 24.2 6.2 57 125-184 20-76 (150)
259 3o48_A Mitochondria fission 1 52.3 60 0.0021 23.0 10.3 23 210-232 84-106 (134)
260 1mzb_A Ferric uptake regulatio 51.6 59 0.002 22.7 7.1 59 125-186 11-70 (136)
261 4ets_A Ferric uptake regulatio 51.0 68 0.0023 23.3 7.7 71 113-186 14-86 (162)
262 4h7y_A Dual specificity protei 49.1 40 0.0014 24.7 5.5 62 146-211 74-135 (161)
263 2jul_A Calsenilin; EF-hand, ca 48.1 61 0.0021 25.1 7.2 12 185-196 164-175 (256)
264 4aez_C MAD3, mitotic spindle c 48.0 34 0.0012 26.7 5.4 53 149-202 131-183 (223)
265 3ygs_P Procaspase 9; apoptosis 47.8 44 0.0015 22.0 5.4 66 153-226 25-90 (97)
266 2fe3_A Peroxide operon regulat 46.3 76 0.0026 22.4 7.3 63 192-257 10-72 (145)
267 3us6_A Histidine-containing ph 45.4 83 0.0028 22.7 7.3 48 184-232 70-121 (153)
268 3eyy_A Putative iron uptake re 44.6 67 0.0023 22.8 6.4 35 126-162 13-47 (145)
269 2w57_A Ferric uptake regulatio 43.4 80 0.0027 22.5 6.6 58 125-185 10-68 (150)
270 1mzb_A Ferric uptake regulatio 43.4 71 0.0024 22.3 6.3 62 156-220 7-69 (136)
271 1wgl_A TOLL-interacting protei 42.7 43 0.0015 20.0 4.2 22 182-203 36-57 (59)
272 2fu4_A Ferric uptake regulatio 40.9 63 0.0022 20.0 6.6 55 126-183 11-66 (83)
273 2p58_C Putative type III secre 40.7 83 0.0028 21.3 6.0 59 184-250 22-80 (116)
274 2d2s_A Exocyst complex compone 40.5 1.3E+02 0.0044 23.4 8.0 90 138-230 24-117 (235)
275 1s6c_A KV4 potassium channel-i 40.0 99 0.0034 22.0 7.9 41 186-228 140-180 (183)
276 3eiq_C Programmed cell death p 40.0 1.1E+02 0.0038 25.6 7.7 68 134-204 219-288 (358)
277 3esl_A Checkpoint serine/threo 39.3 1.1E+02 0.0038 23.3 7.0 58 182-241 92-150 (202)
278 2f6m_A Suppressor protein STP2 38.7 62 0.0021 19.8 4.4 47 171-218 4-50 (65)
279 3eiq_C Programmed cell death p 38.5 72 0.0025 26.7 6.4 64 171-235 219-284 (358)
280 1y8m_A FIS1; mitochondria, unk 38.1 1.1E+02 0.0037 22.0 10.8 71 129-203 36-109 (144)
281 4ets_A Ferric uptake regulatio 38.1 1.1E+02 0.0039 22.1 7.1 69 149-220 14-85 (162)
282 3lvg_A Clathrin heavy chain 1; 36.9 1.8 6.3E-05 38.4 -3.7 117 130-257 81-215 (624)
283 3dd4_A KV channel-interacting 36.9 1.2E+02 0.0041 22.9 7.2 95 131-228 120-226 (229)
284 3twr_A Tankyrase-2; ankyrin re 36.8 32 0.0011 24.2 3.6 82 138-228 45-129 (165)
285 3ygs_P Procaspase 9; apoptosis 36.5 69 0.0024 21.0 4.9 40 146-191 51-90 (97)
286 2dod_A Transcription elongatio 36.3 47 0.0016 21.3 3.9 37 111-148 15-51 (82)
287 2w57_A Ferric uptake regulatio 36.2 87 0.003 22.3 5.8 62 156-220 6-68 (150)
288 3eyy_A Putative iron uptake re 35.9 1.1E+02 0.0039 21.5 6.4 60 156-219 8-67 (145)
289 2xig_A Ferric uptake regulatio 34.6 1.2E+02 0.0042 21.5 7.6 64 154-220 14-77 (150)
290 4b4t_P 26S proteasome regulato 34.2 2.2E+02 0.0076 24.3 10.2 97 136-232 141-246 (445)
291 2uwj_G Type III export protein 33.8 81 0.0028 21.3 4.7 58 184-249 21-78 (115)
292 4fke_A Aminopeptidase N; zinc 33.7 3.1E+02 0.011 26.0 11.9 109 112-229 705-818 (909)
293 4fhn_B Nucleoporin NUP120; pro 32.0 2.4E+02 0.0083 27.5 9.9 88 134-223 901-990 (1139)
294 1jba_A GCAP-2, protein (guanyl 31.3 1.5E+02 0.0052 21.5 7.2 64 150-214 60-124 (204)
295 2zu6_B Programmed cell death p 31.1 1.3E+02 0.0044 24.5 6.6 66 135-203 169-236 (307)
296 3qil_A Clathrin heavy chain 1; 31.0 37 0.0013 23.7 2.8 53 135-192 35-87 (125)
297 2wvi_A Mitotic checkpoint seri 30.6 1.2E+02 0.0042 22.2 5.8 55 186-242 77-132 (164)
298 1uzc_A Hypothetical protein FL 29.9 57 0.0019 20.3 3.3 36 112-148 14-49 (71)
299 3f3f_C Nucleoporin NUP85; stru 29.0 1.4E+02 0.0048 26.7 6.9 50 205-258 517-566 (570)
300 2ijq_A Hypothetical protein; s 28.8 1.7E+02 0.0058 21.3 7.8 60 172-232 36-103 (161)
301 3txn_A 26S proteasome regulato 28.8 2.7E+02 0.0091 23.6 11.0 95 137-231 104-208 (394)
302 1jog_A Hypothetical protein HI 28.7 23 0.00077 25.5 1.5 20 132-151 77-96 (146)
303 2zu6_B Programmed cell death p 28.7 1.1E+02 0.0036 25.1 5.7 63 172-235 169-233 (307)
304 2o03_A Probable zinc uptake re 28.5 90 0.0031 21.6 4.7 48 137-186 15-62 (131)
305 4a1g_A Mitotic checkpoint seri 28.4 1.7E+02 0.0057 21.1 6.7 54 186-241 82-136 (152)
306 1nzn_A CGI-135 protein, fissio 28.3 1.5E+02 0.0052 20.6 9.1 85 114-203 19-106 (126)
307 3mwm_A ZUR, putative metal upt 28.2 80 0.0027 22.2 4.4 48 136-185 17-64 (139)
308 2keb_A DNA polymerase subunit 27.8 1.4E+02 0.0047 19.9 6.5 30 189-218 29-58 (101)
309 3mwm_A ZUR, putative metal upt 27.3 1E+02 0.0035 21.6 4.9 48 173-220 17-64 (139)
310 1otr_A Protein CUE2; protein-p 26.5 95 0.0033 17.7 5.0 14 217-230 31-44 (49)
311 2o03_A Probable zinc uptake re 26.3 1.2E+02 0.0041 20.9 5.0 46 174-219 15-60 (131)
312 2yru_A Steroid receptor RNA ac 25.9 1.6E+02 0.0056 20.2 8.2 42 191-232 48-89 (118)
313 3v3e_B Nuclear receptor subfam 25.4 64 0.0022 25.4 3.8 72 3-74 1-80 (257)
314 1ug3_A EIF4GI, eukaryotic prot 25.3 36 0.0012 28.2 2.4 99 135-250 14-113 (339)
315 2b7e_A PRE-mRNA processing pro 24.9 39 0.0013 20.2 1.8 28 186-214 3-31 (59)
316 4ds7_A Calmodulin, CAM; protei 24.6 1.2E+02 0.004 20.4 4.8 46 186-231 84-130 (147)
317 3m6y_A 4-hydroxy-2-oxoglutarat 24.4 34 0.0012 27.1 1.8 88 109-197 167-269 (275)
318 1wty_A Hypothetical protein TT 24.3 1.5E+02 0.0051 20.1 5.1 25 171-196 55-79 (119)
319 3m0z_A Putative aldolase; MCSG 24.0 32 0.0011 26.9 1.6 88 109-197 144-246 (249)
320 3ffl_A Anaphase-promoting comp 23.5 2.2E+02 0.0076 20.9 8.4 97 138-234 26-152 (167)
321 2mys_C Myosin; muscle protein, 23.4 1.7E+02 0.0059 19.5 12.3 77 171-252 64-147 (149)
322 3lxu_X Tripeptidyl-peptidase 2 23.4 3E+02 0.01 27.6 8.6 79 171-254 1236-1330(1354)
323 1fsh_A Dishevelled-1; three-he 23.0 1.7E+02 0.0058 19.5 5.0 34 202-235 48-85 (105)
324 3ezq_B Protein FADD; apoptosis 22.8 1.1E+02 0.0038 21.1 4.2 23 172-194 66-88 (122)
325 3r88_A Anthranilate phosphorib 22.7 2.6E+02 0.0088 23.5 7.2 66 131-199 22-89 (377)
326 3t8k_A Uncharacterized protein 22.5 2.2E+02 0.0077 20.6 6.9 24 142-165 45-68 (186)
327 4aez_C MAD3, mitotic spindle c 22.1 1.5E+02 0.0052 22.9 5.2 54 186-241 131-185 (223)
328 3pvs_A Replication-associated 22.0 3.7E+02 0.013 22.9 8.4 106 112-219 167-305 (447)
329 1oai_A Nuclear RNA export fact 21.9 80 0.0027 18.8 2.8 23 181-203 32-55 (59)
330 2jnf_A Troponin C; stretch act 21.8 2E+02 0.0067 19.6 6.2 49 184-232 89-138 (158)
331 2etb_A Transient receptor pote 21.7 61 0.0021 24.7 3.0 90 138-229 5-112 (256)
332 1q2z_A ATP-dependent DNA helic 21.5 37 0.0013 23.5 1.5 51 112-165 43-96 (120)
333 2p22_A Suppressor protein STP2 20.8 1.5E+02 0.0053 21.9 4.7 46 171-217 113-158 (174)
334 2cos_A Serine/threonine protei 20.7 1.1E+02 0.0036 17.9 3.0 11 220-230 38-48 (54)
335 1qsa_A Protein (soluble lytic 20.5 4.7E+02 0.016 23.5 11.6 117 111-232 229-347 (618)
336 2chq_A Replication factor C sm 20.5 3.1E+02 0.011 21.4 14.4 136 112-255 163-317 (319)
337 1rw2_A ATP-dependent DNA helic 20.4 66 0.0023 23.3 2.7 51 112-165 74-127 (152)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.3e-32 Score=245.71 Aligned_cols=154 Identities=15% Similarity=0.095 Sum_probs=114.1
Q ss_pred HHHHHhCccCCCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCC---------hHHHHHHHHHHHHcC
Q 047392 92 NNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN---------VKGLWDFLKEMSRRG 162 (258)
Q Consensus 92 ~~~l~~g~~~~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~---------~~~a~~~~~~m~~~g 162 (258)
.+..+.+++..++.. +|+++|++|.+ .|++||..|||+||.+|++.+. +++|.++|++|.+.|
T Consensus 29 l~~~id~c~k~G~~~-------~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G 100 (501)
T 4g26_A 29 LKQKLDMCSKKGDVL-------EALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK 100 (501)
T ss_dssp HHHHHHHTTTSCCHH-------HHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHH-------HHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC
Confidence 444566666666544 77777777774 4777777777777777776654 466777777777777
Q ss_pred CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH
Q 047392 163 NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242 (258)
Q Consensus 163 ~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ 242 (258)
+.| |.+|||+||++|++.|++++|.++|++|.+.|+.||..|||+||.+||+.|++++|.++|++|.+.|+. ||..
T Consensus 101 ~~P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~--Pd~~ 176 (501)
T 4g26_A 101 VVP--NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV--PEEP 176 (501)
T ss_dssp CCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC--CCHH
T ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CCHH
Confidence 766 777777777777777777777777777777777777777777777777777777777777777777744 7777
Q ss_pred HHHHHHHHHHHcCCC
Q 047392 243 TYTILISSYCKYGMQ 257 (258)
Q Consensus 243 ty~~li~~~~~~g~~ 257 (258)
||++||.+|++.|++
T Consensus 177 ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 177 ELAALLKVSMDTKNA 191 (501)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhCCCH
Confidence 777777777777764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=6.2e-31 Score=236.42 Aligned_cols=163 Identities=12% Similarity=0.074 Sum_probs=149.0
Q ss_pred HHHHHHHHHHhCccCCCCcccc--ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 047392 87 ADNIANNVLVLGPAAYRNPQKV--TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG 164 (258)
Q Consensus 87 ~~~~~~~~l~~g~~~~~~~~~~--~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 164 (258)
++..+||+++.+++..+..... ...++.|.++|++|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.
T Consensus 59 pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~-~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~ 137 (501)
T 4g26_A 59 LSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI-VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 137 (501)
T ss_dssp CCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred CCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 4467889998887765543322 334789999999999 5699999999999999999999999999999999999998
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHH
Q 047392 165 ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244 (258)
Q Consensus 165 ~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty 244 (258)
| |.+|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|++.|.. |+..||
T Consensus 138 P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~--ps~~T~ 213 (501)
T 4g26_A 138 P--RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQ--VSKSTF 213 (501)
T ss_dssp C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS--BCHHHH
T ss_pred C--ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCC--cCHHHH
Confidence 8 999999999999999999999999999999999999999999999999999999999999999999965 999999
Q ss_pred HHHHHHHHHc
Q 047392 245 TILISSYCKY 254 (258)
Q Consensus 245 ~~li~~~~~~ 254 (258)
++++..|+..
T Consensus 214 ~~l~~~F~s~ 223 (501)
T 4g26_A 214 DMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHSH
T ss_pred HHHHHHHhcC
Confidence 9999999864
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.93 E-value=3.7e-26 Score=213.78 Aligned_cols=122 Identities=13% Similarity=0.122 Sum_probs=112.0
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHH---cCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSR---RGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~t 206 (258)
--..|||+||++||++|++++|.++|++|.+ .|+.| |++|||+||+|||+.|++++|.++|++|++.|+.||++|
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P--dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL--TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC--CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 3467999999999999999999999988864 47777 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcC
Q 047392 207 YNVVINALCRVGN-FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (258)
Q Consensus 207 y~~li~~~~~~g~-~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g 255 (258)
||+||+++|+.|+ .++|.++|++|...|+. ||..||+++++++.+.+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~--PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLK--LQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCC--SHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCC--CChhhcccccChhhHHH
Confidence 9999999999998 57899999999999955 99999998888777653
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.88 E-value=3.8e-24 Score=200.31 Aligned_cols=159 Identities=14% Similarity=0.051 Sum_probs=129.0
Q ss_pred HHHHHHHHHHhCccCCCCccccccCHHHHHHHHHHHHh--hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 047392 87 ADNIANNVLVLGPAAYRNPQKVTLGINKATEFYHWVER--FFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG 164 (258)
Q Consensus 87 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~a~~~f~~m~~--~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 164 (258)
..+.++|+++.|++..+... +|.++|++|.+ ..|+.||.+|||+||+|||+.|++++|.++|++|++.|+.
T Consensus 125 ~~~~TynaLIdglcK~G~le-------eA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~ 197 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLP-------LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHH-------HHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHhCCCHH-------HHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 34789999999999999765 99999999863 2489999999999999999999999999999999999998
Q ss_pred CCcCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHH
Q 047392 165 ELVTTSTVTCLIKVLGEEGLV-NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243 (258)
Q Consensus 165 ~~~~~~t~~~li~~~~~~g~~-~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~t 243 (258)
| |++|||+||+|+|+.|+. ++|.++|++|.+.|+.||.+|||++|.++.+.+-++.+.+++.++.-..- ..|...|
T Consensus 198 P--DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~-~~~~~~t 274 (1134)
T 3spa_A 198 P--DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQ-LPPPVNT 274 (1134)
T ss_dssp C--CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCC-CCCCCCC
T ss_pred C--cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCC-Ccccccc
Confidence 8 999999999999999985 78999999999999999999999999988887555555444333322110 0122455
Q ss_pred HHHHHHHHHHcC
Q 047392 244 YTILISSYCKYG 255 (258)
Q Consensus 244 y~~li~~~~~~g 255 (258)
...|.+-|.+.|
T Consensus 275 ~~LL~dl~s~d~ 286 (1134)
T 3spa_A 275 SKLLRDVYAKDG 286 (1134)
T ss_dssp CTTTHHHHCCCS
T ss_pred hHHHHHHHccCC
Confidence 555556565544
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.45 E-value=1.4e-12 Score=118.16 Aligned_cols=138 Identities=14% Similarity=0.063 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|+++|+++... .+.+..+|+.+..+|.+.|++++|.++|++|.+.. +. +..+|+.+..+|.+.|++++|.++
T Consensus 423 ~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 423 HDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY--DPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp HHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC--ChHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666666665532 22355566666666666666666666666665542 11 455666666666666666666666
Q ss_pred HHHHHhC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 192 FYRMKQF----RCRPD--VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~----g~~p~--~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|++|.+. +..|+ ..+|+.+..+|.+.|++++|.++|+++.+.+ + .+..+|..+..+|.+.|+.
T Consensus 498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p--~~~~~~~~l~~~~~~~g~~ 566 (597)
T 2xpi_A 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T--NDANVHTAIALVYLHKKIP 566 (597)
T ss_dssp HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S--CCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C--CChHHHHHHHHHHHHhCCH
Confidence 6666543 55555 5566666666666666666666666665543 1 3556666666666666653
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.43 E-value=2.7e-12 Score=116.42 Aligned_cols=141 Identities=13% Similarity=-0.053 Sum_probs=120.5
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
...+++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|++|.+.+. .+..+|+.+..+|.+.|++++|
T Consensus 386 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ---GTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT---TCSHHHHHHHHHHHHHTCHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---cchHHHHHHHHHHHHcCCHHHH
Confidence 34477999999998753 234678999999999999999999999999988742 2667899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC----CCCCCCC--HHHHHHHHHHHHHcCCC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP----GFRCPPD--VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~----~~~~~pd--~~ty~~li~~~~~~g~~ 257 (258)
.++|++|.+.. +.+..+|+.+...|++.|++++|.++|++|... +.. |+ ..+|..+..+|.+.|++
T Consensus 461 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 461 NEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN--EKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--SGGGHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc--hhhHHHHHHHHHHHHHHhcCH
Confidence 99999998753 347899999999999999999999999999875 544 88 78999999999999975
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.92 E-value=5.2e-08 Score=83.49 Aligned_cols=137 Identities=16% Similarity=0.089 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+++|++.|++.... -+-+..+|..+...+.+.|++++|.+.|+++.+.+ | -+..+|+.+..+|.+.|++++|.+.
T Consensus 219 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~l~~~~~~~g~~~~A~~~ 293 (388)
T 1w3b_A 219 FDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--P-HFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp TTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--S-SCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--C-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34555665555432 12246677778888888888888888888887763 2 1345788888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|+++.+. .+.+..+|+.+...+.+.|++++|.+.|+++.... + .+..+|..+...|.+.|+.
T Consensus 294 ~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p--~~~~~~~~l~~~~~~~g~~ 355 (388)
T 1w3b_A 294 YNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-P--EFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-T--TCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C--CcHHHHHHHHHHHHHcCCH
Confidence 8888764 24577788888888888888888888888887643 1 3466788888888888775
No 8
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.85 E-value=3e-07 Score=71.82 Aligned_cols=141 Identities=9% Similarity=-0.056 Sum_probs=77.5
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcc-CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARG-NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
...++|.+.|++.... .+.+..++..+...+... |++++|.+.++++.+.+..| .+...+..+..+|.+.|++++|
T Consensus 56 ~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 56 KVNDKAQESFRQALSI--KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP-TPYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCS-CHHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCc-chHHHHHHHHHHHHHcCCHHHH
Confidence 3466666666665532 123455566666666666 66666666666665521111 1244566666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
.+.|+++.+.. +.+...+..+...+.+.|+.++|.++|++.....-. .+...+..+...+.+.|+
T Consensus 133 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 197 (225)
T 2vq2_A 133 EAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV--LQADDLLLGWKIAKALGN 197 (225)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCc
Confidence 66666665432 223555666666666666666666666666553310 244445555444455443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.81 E-value=2.7e-07 Score=80.32 Aligned_cols=136 Identities=13% Similarity=0.048 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCH---HHHHHHHHH----------
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTT---STVTCLIKV---------- 178 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~---~t~~~li~~---------- 178 (258)
.++|++.|+++.+.. +.+...|..+...+.+.|++++|.+.|+++.+.. | .+. ..+..+...
T Consensus 76 ~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 76 SKAALPDLTKVIQLK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--P-SENEEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--C-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C-CChhhHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544321 1234444555555555555555555555554432 1 011 334444332
Q ss_pred --HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 179 --LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 179 --~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
|.+.|++++|.+.|+++.+.. +.+...+..+...|.+.|++++|.++|+++.... ..+..+|..+...|.+.|+
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK---NDNTEAFYKISTLYYQLGD 226 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---CSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCC
Confidence 455555555555555554321 2244455555555555555555555555554432 0234455555555555554
No 10
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.80 E-value=3.4e-07 Score=65.13 Aligned_cols=118 Identities=11% Similarity=0.130 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|.++|+++... .+.+...|..+...+...|++++|.+.++++.+.+. .+...+..+...+...|++++|.+
T Consensus 16 ~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 90 (136)
T 2fo7_A 16 DYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---RSAEAWYNLGNAYYKQGDYDEAIE 90 (136)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC---CchHHHHHHHHHHHHhcCHHHHHH
Confidence 367999999998753 234677888889999999999999999999988742 256678899999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.|+++.+.. +.+..++..+...+.+.|+.++|.+.|+++....
T Consensus 91 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 91 YYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 999998753 3467888899999999999999999999988643
No 11
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.79 E-value=6.2e-07 Score=76.74 Aligned_cols=137 Identities=13% Similarity=0.077 Sum_probs=114.0
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
...++|++.|+++.+. -+.+..+|..+...+.+.|++++|.+.|+++.+.. +. +..+|+.+...+.+.|++++|.
T Consensus 251 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~--~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 251 GLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PT--HADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp TCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TT--CHHHHHHHHHHHHTTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cc--cHHHHHHHHHHHHHcCCHHHHH
Confidence 4478999999998853 22357789999999999999999999999998873 33 6778999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCC
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGM 256 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~ 256 (258)
+.|+++.+.. +.+..+|..+...+.+.|++++|.+.|+++.+.. |+ ...|..+-..+.+.|+
T Consensus 326 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 326 RLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS----PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC----TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHhHHHHHHHccC
Confidence 9999998742 4467899999999999999999999999999743 54 5567777666666553
No 12
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.77 E-value=2.3e-07 Score=66.06 Aligned_cols=117 Identities=12% Similarity=0.119 Sum_probs=99.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~ 213 (258)
.|..+...+.+.|++++|.++++++.+.+. .+..++..+...+...|++++|.+.|+++...+ +.+...|..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP---RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC---cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence 467788889999999999999999988642 256688999999999999999999999998754 3467788899999
Q ss_pred HHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 214 ~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
+.+.|++++|.++|+++....- .+..++..+...+.+.|+.
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~ 119 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDP---RSAEAWYNLGNAYYKQGDY 119 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTTTCH
T ss_pred HHHhcCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHccH
Confidence 9999999999999999987541 4677888888889888864
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.77 E-value=1.8e-07 Score=81.34 Aligned_cols=138 Identities=13% Similarity=0.079 Sum_probs=93.8
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
...+++|++.|+++.+. .+.+...+..+...+.+.|++++|.+.|+++.+.. + .+..+|+.+..+|.+.|++++|
T Consensus 156 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-N--DNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-C--SCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C--CCHHHHHHHHHHHHHcCCHHHH
Confidence 34467888888887643 23466777778888888888888888888877653 1 2566778888888888888888
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHH------------HHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-----HHHHHHHHHH
Q 047392 189 LATFYRMKQFRCRPD-VYAYNVV------------INALCRVGNFNKARFLLEQMELPGFRCPPD-----VYTYTILISS 250 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~-~~ty~~l------------i~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-----~~ty~~li~~ 250 (258)
.+.|+++... .|+ ...+..+ ...+.+.|++++|..+|+++.... |+ ...|..+...
T Consensus 231 ~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 231 LSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHH
Confidence 8888887653 233 3334333 566777777777777777777632 54 3456666666
Q ss_pred HHHcCCC
Q 047392 251 YCKYGMQ 257 (258)
Q Consensus 251 ~~~~g~~ 257 (258)
+.+.|++
T Consensus 305 ~~~~g~~ 311 (450)
T 2y4t_A 305 FSKDEKP 311 (450)
T ss_dssp HHTTTCH
T ss_pred HHHCCCH
Confidence 7666653
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.76 E-value=3.3e-07 Score=77.45 Aligned_cols=145 Identities=11% Similarity=0.005 Sum_probs=117.8
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
...++|++.|+++.....-.++..+|..+...+.+.|++++|.+.|++..+.. | .+..+|..+...|.+.|++++|.
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~-~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--P-NDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c-CCHHHHHHHHHHHHHcCCHHHHH
Confidence 34789999999987543222258899999999999999999999999998863 2 25678999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCC-CC-------CHHHHHHHHHHHHHcCCCC
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC-PP-------DVYTYTILISSYCKYGMQT 258 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~-~p-------d~~ty~~li~~~~~~g~~~ 258 (258)
+.|++..+.. +.+...|..+-..+.+.|++++|...|++.....-.. .| ...+|..+..+|.+.|+.+
T Consensus 272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 9999998743 3467889999999999999999999999997643100 01 1578999999999998753
No 15
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.76 E-value=4.8e-07 Score=72.42 Aligned_cols=142 Identities=13% Similarity=-0.003 Sum_probs=106.6
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
....++|.+.|++..+.. +.+...|..+...+.+.|++++|.+.+++..+.+..| .+...+..+...|.+.|++++|
T Consensus 84 ~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 84 EMEPKLADEEYRKALASD--SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP-ERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCT-THHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCc-ccHHHHHHHHHHHHHcCCHHHH
Confidence 345778888888876432 2467778888888888899999999988887622222 2455778888888889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.+.|++..+.. +.+...|..+...+.+.|+.++|..+|++..... ..+...+..+...+.+.|+.
T Consensus 161 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~ 225 (252)
T 2ho1_A 161 KEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG---GQNARSLLLGIRLAKVFEDR 225 (252)
T ss_dssp HHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHccCH
Confidence 99998887643 2357788888888889999999999998888753 14566777777777777764
No 16
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.75 E-value=3e-07 Score=76.47 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHH----HHHHHHHHhcCChH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV----TCLIKVLGEEGLVN 186 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~----~~li~~~~~~g~~~ 186 (258)
..++|++.|++ +.+...+..+...+.+.|+.++|.+.|+++.+.. | +. +. .+.+..+...|+++
T Consensus 116 ~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p--~~-~~~~l~~a~~~l~~~~~~~~ 183 (291)
T 3mkr_A 116 NPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--E--DA-TLTQLATAWVSLAAGGEKLQ 183 (291)
T ss_dssp CHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T--TC-HHHHHHHHHHHHHHCTTHHH
T ss_pred CHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c--Cc-HHHHHHHHHHHHHhCchHHH
Confidence 36688888876 3677888889999999999999999999998874 3 32 22 23334445568999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 187 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
+|..+|+++.+. .+.+...|+.+-.++.+.|++++|...|++.....- -|..++..++..+...|+.
T Consensus 184 eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p---~~~~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 184 DAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS---GHPETLINLVVLSQHLGKP 250 (291)
T ss_dssp HHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCC
Confidence 999999999876 456888899999999999999999999999887541 3566888888888888764
No 17
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.74 E-value=5.6e-07 Score=67.88 Aligned_cols=137 Identities=12% Similarity=0.007 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|.+.|+++... .+.+...|..+...+.+.|++++|.+.+++..+.. + .+...+..+...|...|++++|.+.
T Consensus 24 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~--~~~~~~~~~a~~~~~~~~~~~A~~~ 98 (186)
T 3as5_A 24 YSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-P--DNVKVATVLGLTYVQVQKYDLAVPL 98 (186)
T ss_dssp HHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C--CCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 56888888877532 23467778888888889999999999999887763 1 2566788888889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|++..+.. +.+...+..+...+.+.|++++|.++|++.....- .+...|..+...|.+.|+.
T Consensus 99 ~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~ 160 (186)
T 3as5_A 99 LIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP---NEGKVHRAIAFSYEQMGRH 160 (186)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHcCCH
Confidence 99887642 34677888888888899999999999999887541 4567788888888887764
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.73 E-value=2.3e-07 Score=78.64 Aligned_cols=149 Identities=9% Similarity=-0.037 Sum_probs=117.7
Q ss_pred ccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC
Q 047392 105 PQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL 184 (258)
Q Consensus 105 ~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~ 184 (258)
.+......++|.+.|+++.....-.++..+|..+...+.+.|++++|.+.|++..+.. + .+..+|+.+..+|.+.|+
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p--~~~~~~~~l~~~~~~~g~ 262 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-P--EDYSLWNRLGATLANGDR 262 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T--TCHHHHHHHHHHHHHTTC
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C--CCHHHHHHHHHHHHHcCC
Confidence 3333455889999999998653222368899999999999999999999999998874 2 257789999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCC---C------CCCCHHHHHHHHHHHHHcC
Q 047392 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF---R------CPPDVYTYTILISSYCKYG 255 (258)
Q Consensus 185 ~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~---~------~~pd~~ty~~li~~~~~~g 255 (258)
+++|.+.|++..+.. +-+..+|..+-..|.+.|++++|...|++.....- . ...+...|..+-.++...|
T Consensus 263 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 263 SEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 999999999998753 33588899999999999999999999999976320 0 0013678899988888887
Q ss_pred CC
Q 047392 256 MQ 257 (258)
Q Consensus 256 ~~ 257 (258)
+.
T Consensus 342 ~~ 343 (365)
T 4eqf_A 342 QP 343 (365)
T ss_dssp CH
T ss_pred cH
Confidence 64
No 19
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.73 E-value=1.5e-06 Score=68.88 Aligned_cols=138 Identities=16% Similarity=0.063 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|++.|++.... .+.+...|..+...+.+.|++++|.+.+++..+.. +. +...+..+...|.+.|++++|.+.
T Consensus 73 ~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~--~~~~~~~~a~~~~~~~~~~~A~~~ 147 (243)
T 2q7f_A 73 LERALAFYDKALEL--DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-ME--NGDLFYMLGTVLVKLEQPKLALPY 147 (243)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CC--SHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC--CHHHHHHHHHHHHHhccHHHHHHH
Confidence 56888888887743 23467788888888889999999999999888764 22 556788888889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~~ 258 (258)
++++.+.. +.+...|..+...+.+.|++++|.+.|++.....- .+..+|..+...|.+.|+.+
T Consensus 148 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~ 210 (243)
T 2q7f_A 148 LQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP---GHADAFYNAGVTYAYKENRE 210 (243)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHccCHH
Confidence 99887642 34677888888888899999999999998877541 45677888888888888764
No 20
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.70 E-value=1.3e-06 Score=69.79 Aligned_cols=130 Identities=11% Similarity=0.002 Sum_probs=93.5
Q ss_pred ccCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 109 TLGINKATEFYHWVERFFHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
....++|.+.|++... .+..| +...|..+...+.+.|++++|.+.+++..+... .+...+..+...|.+.|++++
T Consensus 118 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR---NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp TTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTTCHHH
T ss_pred HhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHcCCHHH
Confidence 4457888888888764 22334 455677777788888888888888888777641 245678888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
|.+.|++..+.. +.+...+..+...+.+.|+.++|.++++++.... |+...+..+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~ 248 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY----PGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTSHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC----CCCHHHHHH
Confidence 888888877642 3456677777788888888888888888887754 655544443
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.68 E-value=1e-06 Score=72.92 Aligned_cols=139 Identities=10% Similarity=0.017 Sum_probs=117.6
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
....++|.+.|++.... .+.+...+..+...+.+.|++++|.+.+++..+... .+..+|..+...|.+.|++++|
T Consensus 151 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP---DDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHH
Confidence 34478999999998754 234678899999999999999999999999988741 2567899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-------------HHHHHHHHHHHHHcC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-------------VYTYTILISSYCKYG 255 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-------------~~ty~~li~~~~~~g 255 (258)
.+.|++..+.. +.+..+|..+...+.+.|++++|.+.|++..... |+ ..+|..+...|.+.|
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ----VGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----TTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 99999987743 3467889999999999999999999999998743 44 778999999999988
Q ss_pred CC
Q 047392 256 MQ 257 (258)
Q Consensus 256 ~~ 257 (258)
+.
T Consensus 301 ~~ 302 (327)
T 3cv0_A 301 RP 302 (327)
T ss_dssp CH
T ss_pred CH
Confidence 74
No 22
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.66 E-value=6.8e-07 Score=72.23 Aligned_cols=118 Identities=12% Similarity=-0.087 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 112 INKATEFYHWVERFFHFF--HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~--p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
.++|++.|+++.+..... .+..+|..+...+...|++++|.+.|++..+.. | .+..+|..+..+|...|++++|.
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--P-DMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--C-CcHHHHHHHHHHHHHccCHHHHH
Confidence 566777777666331111 134456666666667777777777777766653 1 14556666777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
+.|++..+.. +.+...|..+-..+.+.|++++|...|+++...
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777766532 224566666667777777777777777776653
No 23
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.66 E-value=9.7e-07 Score=69.94 Aligned_cols=138 Identities=11% Similarity=0.024 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
..++|.+.|++... ..+.+...+..+...+.+.|++++|.+.+++..+... .+..++..+...|...|++++|.+
T Consensus 38 ~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~ 112 (243)
T 2q7f_A 38 DYEKAAEAFTKAIE--ENKEDAIPYINFANLLSSVNELERALAFYDKALELDS---SAATAYYGAGNVYVVKEMYKEAKD 112 (243)
T ss_dssp ----CCTTHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---cchHHHHHHHHHHHHhccHHHHHH
Confidence 35688888888874 2335688888999999999999999999999988742 266789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.|+++.+.. +.+...|..+...+.+.|++++|.++|++..... ..+...+..+...|.+.|+.
T Consensus 113 ~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 113 MFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN---ENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHcCCH
Confidence 999998753 3467889999999999999999999999998754 14677888888889888875
No 24
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.66 E-value=2.8e-06 Score=66.15 Aligned_cols=119 Identities=11% Similarity=-0.026 Sum_probs=52.4
Q ss_pred cCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
...++|.+.|+++.. .+..|+ ...|..+...+.+.|++++|.+.+++..+... .+...+..+..+|.+.|++++|
T Consensus 91 ~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 91 NRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP---QFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp CCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCchHHHHHHHHHHHcCCHHHH
Confidence 344555555554442 111121 33444444444555555555555555444321 1233444445555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
.+.+++..+..-..+...+..+...+.+.|+.+.|..+++.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55555544321112334444444444445555555555554443
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.64 E-value=9.1e-07 Score=73.50 Aligned_cols=132 Identities=9% Similarity=0.035 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.++|++.++++... +..| +...+..+-..+.+.|++++|.+.+++ +. +...+..+...|.+.|+.++|.+
T Consensus 81 ~~~A~~~l~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~--~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 81 RDAIVAELDREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GD--SLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp HHHHHHHHHHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CC--SHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CC--CHHHHHHHHHHHHHCCCHHHHHH
Confidence 45999999998733 4445 455566666889999999999999987 23 66789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 191 TFYRMKQFRCRPDVYAY---NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty---~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.|+++.+.. |+...+ .+++..+...|++++|..+|+++.... + .+...|+.+-.++.+.|++
T Consensus 152 ~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p--~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 152 ELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-S--PTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-C--CCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-C--CcHHHHHHHHHHHHHcCCH
Confidence 999998763 665322 223344445689999999999999863 2 6788899999999999875
No 26
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=5.6e-06 Score=57.96 Aligned_cols=115 Identities=11% Similarity=0.103 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
...|..+...+.+.|++++|.+.++++.+.. + .+..++..+...|.+.|++++|...|+++.+.. +.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-P--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-c--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 5678888899999999999999999998864 2 256789999999999999999999999998753 34678899999
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCCCCCCC-CHHHHHHHHHHHHHc
Q 047392 212 NALCRVGNFNKARFLLEQMELPGFRCPP-DVYTYTILISSYCKY 254 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~~~~~~~~p-d~~ty~~li~~~~~~ 254 (258)
..+.+.|++++|...|+++.... | +...+..+-..+.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALELD----PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHhc
Confidence 99999999999999999998754 4 344555555555444
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.59 E-value=2.6e-06 Score=72.14 Aligned_cols=172 Identities=12% Similarity=0.008 Sum_probs=102.0
Q ss_pred HhhhhhHHHHHHHHHHHHhCcc------CCCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 047392 79 KQRILKKEADNIANNVLVLGPA------AYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLW 152 (258)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~g~~------~~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~ 152 (258)
...+..+++...+..++..... ..+..+......++|++.|++.... -+.+..+|..+...+.+.|++++|.
T Consensus 76 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 153 (365)
T 4eqf_A 76 LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALAVSYTNTSHQQDAC 153 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHccccHHHHH
Confidence 3444555555555555543211 1112222245588888888887643 2344777888888888888888888
Q ss_pred HHHHHHHHcCCC------------------------------------------CC-cCHHHHHHHHHHHHhcCChHHHH
Q 047392 153 DFLKEMSRRGNG------------------------------------------EL-VTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 153 ~~~~~m~~~g~~------------------------------------------~~-~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
+.|+++.+.... |. .+..+|..+...|.+.|++++|.
T Consensus 154 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 233 (365)
T 4eqf_A 154 EALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAI 233 (365)
T ss_dssp HHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHH
Confidence 888888765310 00 03445666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCC
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~ 257 (258)
+.|++..+.. +.+..+|+.+...|.+.|++++|...|++..... |+ ..+|..+-..|.+.|+.
T Consensus 234 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 234 DAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ----PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHCCCH
Confidence 6666665532 2345566666666666666666666666666532 33 55566666666666654
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.56 E-value=3.3e-08 Score=86.44 Aligned_cols=116 Identities=10% Similarity=0.143 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+++|+++++...+. .++..+.+.|+.+|.+.|+++++.++++ .| +..+|+.+-+.|...|++++|...
T Consensus 77 ~EeAi~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~p--n~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 77 WEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GP--NNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC------------------CTTTHHHH
T ss_pred HHHHHHHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CC--cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44555544433321 2334555556666666666665555552 12 333555555555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
|..+ ..|+.+..++++.|++++|.+.+.++. +..||..++.+|+..|+
T Consensus 145 Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~--------~~~~Wk~v~~aCv~~~e 192 (449)
T 1b89_A 145 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGKE 192 (449)
T ss_dssp HHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHHHHHTTC
T ss_pred HHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC--------CchhHHHHHHHHHHcCc
Confidence 5554 135555555555555555555555551 34455555555555554
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.55 E-value=8.7e-06 Score=68.61 Aligned_cols=142 Identities=13% Similarity=0.026 Sum_probs=85.8
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----------------------
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL---------------------- 166 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---------------------- 166 (258)
....++|++.|++.... .+.+..+|..+...+.+.|++++|.+.++++.+......
T Consensus 111 ~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 1fch_A 111 NEQELLAISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 188 (368)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTT
T ss_pred CcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHH
Confidence 34477777777776643 134566777777777777777777777777776542100
Q ss_pred -----------------------c---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 047392 167 -----------------------V---TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220 (258)
Q Consensus 167 -----------------------~---~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~ 220 (258)
| +..++..+...|.+.|++++|.+.|+++.+.. +.+..+|..+...+.+.|++
T Consensus 189 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 189 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCH
Confidence 0 34456666666666666666666666665432 23455666666666666666
Q ss_pred HHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 221 ~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
++|...|++..... ..+...|..+-..|.+.|+
T Consensus 268 ~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 268 EEAVAAYRRALELQ---PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHCCC
Confidence 66666666665532 0234556666666666555
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.53 E-value=3.5e-06 Score=66.56 Aligned_cols=137 Identities=12% Similarity=-0.041 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcc-----------CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARG-----------NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVL 179 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~ 179 (258)
..++|++.|++..+.. +-+...|..+-..+.+. |++++|...|++..+.. | -+...|..+-..|
T Consensus 54 ~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P-~~~~~~~~lg~~~ 128 (217)
T 2pl2_A 54 LVNPALENGKTLVART--PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--P-RYAPLHLQRGLVY 128 (217)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--c-ccHHHHHHHHHHH
Confidence 3679999999887432 23567888888889999 99999999999998864 2 1566788899999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC-CHHHHHHHHHHHHHcCCCC
Q 047392 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP-DVYTYTILISSYCKYGMQT 258 (258)
Q Consensus 180 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p-d~~ty~~li~~~~~~g~~~ 258 (258)
...|++++|++.|++..+.. .+...+..+-..+...|++++|...|++..... | +...+..+-..+.+.|+.+
T Consensus 129 ~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 129 ALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA----PKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHTC-----
T ss_pred HHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHccCHH
Confidence 99999999999999998876 788999999999999999999999999998854 5 5667888888888877753
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.53 E-value=2e-06 Score=68.51 Aligned_cols=145 Identities=10% Similarity=-0.034 Sum_probs=101.6
Q ss_pred ccCHHHHHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-------------------
Q 047392 109 TLGINKATEFYHWVERFF-HFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG------------------- 164 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~-~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~------------------- 164 (258)
....++|++.|++..+.. ...++ ..+|..+...+.+.|++++|.+.|++..+....
T Consensus 51 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 51 KGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEA 130 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHH
Confidence 445788888888765321 11122 467777888888888888888888888773210
Q ss_pred ----CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC
Q 047392 165 ----ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240 (258)
Q Consensus 165 ----~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd 240 (258)
...+...|..+...|...|++++|.+.|++..+.. +.+..+|..+-..+.+.|++++|...|++.....- .+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---~~ 206 (258)
T 3uq3_A 131 EAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP---NF 206 (258)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC
T ss_pred HHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH---HH
Confidence 01134467777888888888888888888887643 34577788888888888888888888888877541 34
Q ss_pred HHHHHHHHHHHHHcCCC
Q 047392 241 VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 241 ~~ty~~li~~~~~~g~~ 257 (258)
...|..+-..|.+.|+.
T Consensus 207 ~~~~~~l~~~~~~~g~~ 223 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEY 223 (258)
T ss_dssp HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhhH
Confidence 66777777778777764
No 32
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.49 E-value=7.1e-06 Score=72.25 Aligned_cols=49 Identities=8% Similarity=-0.157 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 205 ~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.+|..+...+.+.|++++|..+|+++.... |+...|..+...|.+.|+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~l~~~~~~~~~~ 286 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELF----PRVNSYIYMALIMADRNDS 286 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----ccHHHHHHHHHHHHHCCCH
Confidence 445555555666666666666666666543 4455566666666666654
No 33
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.48 E-value=1.3e-05 Score=56.48 Aligned_cols=121 Identities=12% Similarity=-0.060 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 210 (258)
+...|..+...+...|++++|.+.+++..+.. +. +...+..+..+|...|++++|.+.+++..+.. +.+...|..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 86 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PA--NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CC--CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHH
Confidence 35567778888999999999999999988763 22 56689999999999999999999999988743 3457788888
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCCC
Q 047392 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258 (258)
Q Consensus 211 i~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~~ 258 (258)
-..+.+.|++++|...|++.....- -+...+..+...+.+.|+.+
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDP---DNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999987541 36678888888888888764
No 34
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.45 E-value=1.3e-05 Score=60.20 Aligned_cols=117 Identities=12% Similarity=0.070 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
..++|.+.|++.... .+.+...|..+...+...|++++|.+.+++..+.. +. +...+..+..+|.+.|++++|.+
T Consensus 57 ~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~--~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 57 AVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PI--NFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cH--hHHHHHHHHHHHHHcCcHHHHHH
Confidence 366999999998754 23467888889999999999999999999998874 22 66789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
.+++..+.. +.+...|..+...+.+.|+.++|.+.|++....
T Consensus 132 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 132 SFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999988753 346788999999999999999999999998763
No 35
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.44 E-value=2e-08 Score=87.78 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=33.6
Q ss_pred HHHHHHhCccCCCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHH
Q 047392 91 ANNVLVLGPAAYRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS 170 (258)
Q Consensus 91 ~~~~l~~g~~~~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 170 (258)
+|..+..++...+.. ++|++.|.+. +|..+|..++.++.+.|++++|...++...+. .+ ++.
T Consensus 34 vWs~La~A~l~~g~~-------~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~--~~~ 95 (449)
T 1b89_A 34 VWSQLAKAQLQKGMV-------KEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--AR--ESY 95 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCH-------HHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--Cc--cch
Confidence 666666666666654 4889998643 57778999999999999999999966665553 23 456
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~ 250 (258)
+.+.|+.+|++.|+++++.++++ .|+..+|+.+-..|...|++++|..+|+.+. .|..|..+
T Consensus 96 i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~-----------n~~~LA~~ 157 (449)
T 1b89_A 96 VETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLAST 157 (449)
T ss_dssp -------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT-----------CHHHHHHH
T ss_pred hHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh-----------hHHHHHHH
Confidence 79999999999999999998885 3788899999999999999999999999772 68888888
Q ss_pred HHHcCCC
Q 047392 251 YCKYGMQ 257 (258)
Q Consensus 251 ~~~~g~~ 257 (258)
+++.|++
T Consensus 158 L~~Lg~y 164 (449)
T 1b89_A 158 LVHLGEY 164 (449)
T ss_dssp HHTTTCH
T ss_pred HHHhccH
Confidence 8888874
No 36
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.44 E-value=5.9e-06 Score=68.30 Aligned_cols=60 Identities=17% Similarity=0.076 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
+|..+..+|.+.|++++|.+.|++..+.. +.+...|..+-..+.+.|+.++|.+.|++..
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444444444444444444444443321 1233334444444444444444444444443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=7.8e-06 Score=65.04 Aligned_cols=135 Identities=15% Similarity=0.037 Sum_probs=106.5
Q ss_pred cccCHHHHHHHHHHHHhhCC-----------------------CCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 047392 108 VTLGINKATEFYHWVERFFH-----------------------FFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN 163 (258)
Q Consensus 108 ~~~~~~~a~~~f~~m~~~~~-----------------------~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~ 163 (258)
....+++|++.|++...... ..| +...|..+...+.+.|++++|.+.+++..+...
T Consensus 91 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 170 (258)
T 3uq3_A 91 KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 170 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 35669999999999875211 222 345677788889999999999999999988742
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC----CCCCC
Q 047392 164 GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG----FRCPP 239 (258)
Q Consensus 164 ~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~----~~~~p 239 (258)
. +..+|..+..+|.+.|++++|.+.|++..+.. +.+...|..+-..+.+.|+.++|.+.|++..+.. .. |
T Consensus 171 -~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--p 244 (258)
T 3uq3_A 171 -E--DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG--S 244 (258)
T ss_dssp -T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT--T
T ss_pred -c--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCC--C
Confidence 2 66789999999999999999999999998753 3457889999999999999999999999987632 11 7
Q ss_pred CHHHHHHHH
Q 047392 240 DVYTYTILI 248 (258)
Q Consensus 240 d~~ty~~li 248 (258)
+......++
T Consensus 245 ~~~~~~~~l 253 (258)
T 3uq3_A 245 SAREIDQLY 253 (258)
T ss_dssp THHHHHHHH
T ss_pred chHHHHHHH
Confidence 765544443
No 38
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.42 E-value=2.3e-05 Score=64.57 Aligned_cols=143 Identities=11% Similarity=-0.027 Sum_probs=99.5
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-----------------------
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE----------------------- 165 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~----------------------- 165 (258)
....++|.+.|++.... .+.+..+|..+...+.+.|++++|.+.+++..+.....
T Consensus 68 ~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 68 NEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------
T ss_pred cCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 45588888888887753 23467778888888888899999999988887652100
Q ss_pred -----------------------CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047392 166 -----------------------LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222 (258)
Q Consensus 166 -----------------------~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~ 222 (258)
..+..++..+...|.+.|++++|.+.++++.+.. +.+..+|..+...+.+.|++++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 0134456667777777777777777777776542 3356677777777777788888
Q ss_pred HHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 223 a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|.+.|++..... ..+..+|..+...|.+.|+.
T Consensus 225 A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 225 ALDAYNRALDIN---PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHHHHHHHhccH
Confidence 888877776643 13456677777777777653
No 39
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.40 E-value=1.6e-05 Score=65.69 Aligned_cols=138 Identities=12% Similarity=0.044 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGN-NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
..++|.++|+++... .+.+...|..+...+...| +.++|.+.|++..+.. |. +...|..+..+|...|++++|.
T Consensus 71 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~ 145 (330)
T 3hym_B 71 KANELFYLSHKLVDL--YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE--KT-YGPAWIAYGHSFAVESEHDQAM 145 (330)
T ss_dssp CHHHHHHHHHHHHHH--CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--TT-CTHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--Cc-cHHHHHHHHHHHHHccCHHHHH
Confidence 366888888887753 2235667777888888888 8888999888887653 21 3456888888888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
+.|++..+.. +.+...+..+-..+.+.|++++|.+.|++..... ..+...|..+...|.+.|+.
T Consensus 146 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~ 209 (330)
T 3hym_B 146 AAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---PEDPFVMHEVGVVAFQNGEW 209 (330)
T ss_dssp HHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcccH
Confidence 9998887643 2345667778888888999999999998888754 14567788888888877764
No 40
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.38 E-value=4.6e-05 Score=57.81 Aligned_cols=138 Identities=14% Similarity=0.005 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
+.++|++.|++..+.. +-+..+|..+-..+.+.|++++|.+.+......... +...+..+-..+...++++.|.+
T Consensus 20 ~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~ 94 (184)
T 3vtx_A 20 DFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT---SAEAYYILGSANFMIDEKQAAID 94 (184)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch---hHHHHHHHHHHHHHcCCHHHHHH
Confidence 3567777777765321 234556777777777777777777777776665321 34456666666677777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.+.+..... +-+...+..+-..+.+.|++++|.+.|++..+..- -+..+|..+-..|.+.|+.
T Consensus 95 ~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 95 ALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP---GFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc---hhhhHHHHHHHHHHHCCCH
Confidence 776665432 23455566666666677777777777777665431 2345566666666666653
No 41
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.36 E-value=1.5e-06 Score=70.09 Aligned_cols=153 Identities=14% Similarity=0.062 Sum_probs=111.8
Q ss_pred CCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC-----CCCCcCHHHHHHHH
Q 047392 102 YRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-----NGELVTTSTVTCLI 176 (258)
Q Consensus 102 ~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~t~~~li 176 (258)
.++...+....++|++++++.... .-+....++..+-..+...|++++|.+.+++..+.. ........+|..+-
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGH-DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCS-SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 344444444466777777666521 222346678889999999999999999999887651 11123456899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC------CCCCCCC-HH
Q 047392 177 KVLGEEGLVNEALATFYRMKQF------R-CRPDVYAYNVVINALCRVGNFNKARFLLEQMELP------GFRCPPD-VY 242 (258)
Q Consensus 177 ~~~~~~g~~~~a~~l~~~M~~~------g-~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~------~~~~~pd-~~ 242 (258)
..|...|++++|.+.|++..+. . .+....+|..+-..+...|++++|.++|++.... +.. |+ ..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~ 170 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD--PNVAK 170 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC--HHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC--HHHHH
Confidence 9999999999999999998753 1 1234677888889999999999999999999764 111 43 45
Q ss_pred HHHHHHHHHHHcCCC
Q 047392 243 TYTILISSYCKYGMQ 257 (258)
Q Consensus 243 ty~~li~~~~~~g~~ 257 (258)
++..+-..|.+.|+.
T Consensus 171 ~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 171 TKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHcCCH
Confidence 788888888888864
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.34 E-value=3e-05 Score=61.14 Aligned_cols=137 Identities=12% Similarity=-0.037 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhc--------
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEE-------- 182 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~-------- 182 (258)
..++|+..|++.... -+.+...|..+-..+.+.|++++|...|++..+.. | -+...+..+-.+|.+.
T Consensus 20 ~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P-~~~~a~~~lg~~~~~~~~~~~~~~ 94 (217)
T 2pl2_A 20 RYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVART--P-RYLGGYMVLSEAYVALYRQAEDRE 94 (217)
T ss_dssp CHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHHHHTCSSHH
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CcHHHHHHHHHHHHHhhhhhhhhc
Confidence 367999999998742 23467788889999999999999999999998874 2 2566789999999999
Q ss_pred ---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 183 ---GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 183 ---g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|++++|...|++..+.. +-+...|..+=..+...|++++|...|++..... .+...+..+-..|.+.|+.
T Consensus 95 ~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~la~~~~~~g~~ 167 (217)
T 2pl2_A 95 RGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE----DTPEIRSALAELYLSMGRL 167 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTCH
T ss_pred ccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc----cchHHHHHHHHHHHHcCCH
Confidence 99999999999988742 2356778888889999999999999999998864 5677888888888888874
No 43
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.32 E-value=2.4e-05 Score=55.48 Aligned_cols=120 Identities=10% Similarity=-0.073 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 047392 129 FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208 (258)
Q Consensus 129 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~ 208 (258)
+.+...|..+-..+.+.|++++|.+.|++..+.. + .+...+..+-.+|...|++++|.+.|++..+.. +.+...|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 88 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-P--KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT 88 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-T--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence 3456678888899999999999999999988763 1 256789999999999999999999999988743 34678888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCC
Q 047392 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGM 256 (258)
Q Consensus 209 ~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~ 256 (258)
.+-..+.+.|++++|.+.|++..... |+ ...+..+-..+.+.|+
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLD----SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC----GGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999998754 43 4566667677766653
No 44
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.31 E-value=5.2e-06 Score=67.99 Aligned_cols=121 Identities=12% Similarity=0.101 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhh------CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC-----CCCCcCHHHHHHHHHHHH
Q 047392 112 INKATEFYHWVERF------FHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-----NGELVTTSTVTCLIKVLG 180 (258)
Q Consensus 112 ~~~a~~~f~~m~~~------~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~t~~~li~~~~ 180 (258)
.++|.+.|++.... ........+|..+...+...|++++|.+.+++..+.. .........+..+-..|.
T Consensus 85 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 164 (311)
T 3nf1_A 85 YKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ 164 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 55777777766532 1122345678889999999999999999999987651 112224557889999999
Q ss_pred hcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 181 EEGLVNEALATFYRMKQF------RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~------g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..|++++|.+.|++..+. +-.| ...++..+-..+.+.|++++|.++|++...
T Consensus 165 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 165 NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999998763 2223 345788889999999999999999999875
No 45
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.31 E-value=2.1e-05 Score=69.76 Aligned_cols=139 Identities=12% Similarity=0.069 Sum_probs=115.5
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
...+++|.+.|++.... .|+...|..+...+.+.|++++|.+.+++..+... -+..+|..+...|...|++++|
T Consensus 256 ~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP---EYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp TTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC---CCHHHHHHHHHHHHhcCCHHHH
Confidence 34478999999998753 36788888899999999999999999999988742 2566899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.+.|++..+.. +-+...|..+...+.+.|++++|.++|++.....- .+...|..+-..|.+.|+.
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 394 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP---TLPEVPTFFAEILTDRGDF 394 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhCCH
Confidence 99999998753 23567899999999999999999999999987641 3456888888888888864
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.31 E-value=2.4e-05 Score=62.95 Aligned_cols=137 Identities=8% Similarity=-0.066 Sum_probs=71.1
Q ss_pred cCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 110 LGINKATEFYHWVERFFHFFHN--EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
...++|++.|++.... .-.|+ ..+|..+-..+.+.|++++|.+.|++..+... - +..+|..+-..|...|++++
T Consensus 51 ~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~--~~~~~~~l~~~~~~~~~~~~ 126 (272)
T 3u4t_A 51 AKYDLAQKDIETYFSK-VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT-T--RLDMYGQIGSYFYNKGNFPL 126 (272)
T ss_dssp TCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-T--CTHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-c--cHHHHHHHHHHHHHccCHHH
Confidence 3366666666665531 11111 22355566666666666666666666655421 1 23356666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcC
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYG 255 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g 255 (258)
|.+.|++..+. .+-+...|..+-..+...+++++|.+.|++..... |+ ...|..+-..+...|
T Consensus 127 A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----p~~~~~~~~~~~~~~~~~ 190 (272)
T 3u4t_A 127 AIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK----PNIYIGYLWRARANAAQD 190 (272)
T ss_dssp HHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHHcC
Confidence 66666666543 12233344433313334446666666666666532 33 444444444444444
No 47
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.30 E-value=3.4e-05 Score=64.21 Aligned_cols=143 Identities=10% Similarity=-0.007 Sum_probs=100.8
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHH------------H
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCL------------I 176 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~l------------i 176 (258)
....++|.+.|++..... +-+...|..+...+.+.|++++|.+.|++..+.......+...+..+ .
T Consensus 50 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 127 (359)
T 3ieg_A 50 MGKSKAALPDLTKVIALK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQA 127 (359)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHH
Confidence 445788888888876431 23566777788888888888888888888876531000133344444 4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 177 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
..+...|++++|.++|+++.+.. +.+...+..+-..+.+.|++++|...|++..... ..+..+|..+...|.+.|+
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK---SDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---SCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCC
Confidence 67788888888888888887643 3467778888888888888888888888888754 1466678888888877776
Q ss_pred C
Q 047392 257 Q 257 (258)
Q Consensus 257 ~ 257 (258)
.
T Consensus 204 ~ 204 (359)
T 3ieg_A 204 H 204 (359)
T ss_dssp H
T ss_pred H
Confidence 4
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.29 E-value=1.7e-05 Score=63.80 Aligned_cols=116 Identities=10% Similarity=-0.074 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|.+.|++.... .+.+..+|..+...+.+.|++++|.+.|++..+... . +..+|..+..+|.+.|++++|.+
T Consensus 58 ~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~--~~~~~~~la~~~~~~g~~~~A~~ 132 (275)
T 1xnf_A 58 LRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-T--YNYAHLNRGIALYYGGRDKLAQD 132 (275)
T ss_dssp CHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T--CTHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc-c--ccHHHHHHHHHHHHhccHHHHHH
Confidence 366999999998753 234678899999999999999999999999988642 1 45679999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
.|+++.+. .|+...+...+..+...|+.++|...|++....
T Consensus 133 ~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 133 DLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999874 366666666666677788999999988776653
No 49
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.28 E-value=4.5e-05 Score=63.45 Aligned_cols=119 Identities=8% Similarity=0.063 Sum_probs=94.4
Q ss_pred ccCHHHHHHHHHHHHhhCCCCC----CHHHHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFH----NEVTCKEM------------GIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTV 172 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p----~~~~y~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~ 172 (258)
....++|.+.|++... ..| +...+..+ ...+...|++++|.+.+++..+... .+...+
T Consensus 84 ~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~ 157 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV---WDAELR 157 (359)
T ss_dssp HTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHH
T ss_pred cCChHHHHHHHHHHHh---cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CchHHH
Confidence 4558899999988873 235 34444444 4778889999999999999887742 256688
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 173 ~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
..+..+|...|++++|.+.+++..+.. +.+..+|..+...+.+.|++++|.+.|++.....
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 218 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 899999999999999999999988753 4577888889999999999999999999988754
No 50
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.27 E-value=8.9e-06 Score=65.43 Aligned_cols=121 Identities=11% Similarity=0.082 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC-----CCCCcCHHHHHHHHHHHH
Q 047392 112 INKATEFYHWVERFF------HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-----NGELVTTSTVTCLIKVLG 180 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~------~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~t~~~li~~~~ 180 (258)
+++|.+.|++..... .-+....+|..+-..+...|++++|.+.+++..+.. ........+|..+-..|.
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 138 (283)
T 3edt_B 59 YKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ 138 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 457777777765321 112335678889999999999999999999887651 111124567899999999
Q ss_pred hcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 181 EEGLVNEALATFYRMKQF------RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~------g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..|++++|.+.|++..+. +-.| ...++..+-..+.+.|++++|.++|++...
T Consensus 139 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999998764 2123 356788899999999999999999999875
No 51
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.24 E-value=7.6e-05 Score=69.71 Aligned_cols=138 Identities=17% Similarity=0.080 Sum_probs=114.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
..++|++.|++..+.. +-+..+|+.|-..|.+.|++++|.+.|++..+.. | -+...|+.+-.+|.+.|++++|++
T Consensus 24 ~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P-~~~~a~~nLg~~l~~~g~~~~A~~ 98 (723)
T 4gyw_A 24 NIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--P-TFADAYSNMGNTLKEMQDVQGALQ 98 (723)
T ss_dssp CHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4679999999987431 2347789999999999999999999999988864 2 156689999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQT 258 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~~ 258 (258)
.|++..+.. +-+...|+.+-..|.+.|++++|.+.|++..+.. |+ ...|..+...|.+.|+++
T Consensus 99 ~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~----P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 99 CYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK----PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHhhhhhHHHhcccHH
Confidence 999987742 2357889999999999999999999999998754 65 567888888998888764
No 52
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.23 E-value=0.00011 Score=57.66 Aligned_cols=135 Identities=14% Similarity=0.030 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
..++|++.|++..+. .-.++...+..+-.++.+.|++++|.+.|++..+.. |. +...|..+-.+|...|++++|.+
T Consensus 22 ~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~~~~~~A~~ 97 (228)
T 4i17_A 22 NYAVAFEKYSEYLKL-TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YN-LANAYIGKSAAYRDMKNNQEYIA 97 (228)
T ss_dssp CHHHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CS-HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cc-hHHHHHHHHHHHHHcccHHHHHH
Confidence 367999999998753 222677777778899999999999999999998764 21 55679999999999999999999
Q ss_pred HHHHHHhCCCCCC-H-------HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC---HHHHHHHHHHHHHcC
Q 047392 191 TFYRMKQFRCRPD-V-------YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD---VYTYTILISSYCKYG 255 (258)
Q Consensus 191 l~~~M~~~g~~p~-~-------~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd---~~ty~~li~~~~~~g 255 (258)
.|++..+.. |+ . ..|..+=..+.+.|++++|.+.|++..... |+ ...|..+-..|...|
T Consensus 98 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~~l~~~~~~~~ 167 (228)
T 4i17_A 98 TLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT----SKKWKTDALYSLGVLFYNNG 167 (228)
T ss_dssp HHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHHHHHH
Confidence 999988742 43 3 446666677888999999999999999753 76 445666655555444
No 53
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.22 E-value=2.9e-05 Score=54.76 Aligned_cols=114 Identities=12% Similarity=0.044 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCC----HH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR--CRPD----VY 205 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g--~~p~----~~ 205 (258)
...|..+-..+...|++++|...|++..+.. +. +...+..+-.+|...|++++|...+++..... ..++ ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PT--NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Cc--cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 3457778888999999999999999998874 22 56688999999999999999999999987642 1223 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHH
Q 047392 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252 (258)
Q Consensus 206 ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~ 252 (258)
+|..+-..+.+.|++++|.+.|++..... |+...+..+-....
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEH----RTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCHHHHHHHHHHHH
Confidence 88888999999999999999999998854 77666665555443
No 54
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.19 E-value=2e-05 Score=69.31 Aligned_cols=138 Identities=10% Similarity=0.036 Sum_probs=113.4
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
..+++|.+.|++..... |+...|..+...+.+.|++++|.+.+++..+... . +..+|..+...|...|++++|.
T Consensus 251 ~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-N--NSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp SCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-T--CTHHHHHHHHHHHHTTCTTHHH
T ss_pred CCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-C--CHHHHHHHHHHHHHhCCHHHHH
Confidence 44779999999987542 4478888999999999999999999999987642 2 4557999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
+.|++..+.. +.+...|..+...+.+.|++++|..+|+++....- .+..+|..+...|.+.|+.
T Consensus 325 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 325 KDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP---EAPEVPNFFAEILTDKNDF 388 (514)
T ss_dssp HHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST---TCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc---cCHHHHHHHHHHHHHCCCH
Confidence 9999998753 33677889999999999999999999999987531 3566788888888888764
No 55
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.19 E-value=3.8e-05 Score=63.80 Aligned_cols=138 Identities=12% Similarity=0.009 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHHhhCCCCCC-HH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH-hcCChHH
Q 047392 111 GINKATEFYHWVERFFHFFHN-EV-TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLG-EEGLVNE 187 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~-~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~-~~g~~~~ 187 (258)
.+++|.++|++... +.|+ .. .|..+...+.+.|++++|.++|++..+... . +...|........ ..|+.++
T Consensus 114 ~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~--~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 114 KYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-T--RHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp CHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-C--CTHHHHHHHHHHHHTSCCHHH
T ss_pred CHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-C--CHHHHHHHHHHHHHHcCCHHH
Confidence 36688888888763 3343 22 677788888888888888888888776531 1 3334443333322 3588888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC-CCCCC--CHHHHHHHHHHHHHcCCC
Q 047392 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG-FRCPP--DVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 188 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~-~~~~p--d~~ty~~li~~~~~~g~~ 257 (258)
|.++|++..+.. +-+...|..++..+.+.|+.++|..+|++..... +. | ....|..++..+.+.|+.
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~--p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP--PEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC--GGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHHcCCH
Confidence 888888876531 2356777777888888888888888888887752 22 5 355677777777766653
No 56
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.18 E-value=0.00021 Score=55.31 Aligned_cols=116 Identities=9% Similarity=-0.038 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|++.|++.. .|+...|..+-..+.+.|++++|.+.|++..+.. + .+...|..+-.+|...|++++|.+
T Consensus 21 ~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~--~~~~~~~~lg~~~~~~~~~~~A~~ 92 (213)
T 1hh8_A 21 DWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-K--HLAVAYFQRGMLYYQTEKYDLAIK 92 (213)
T ss_dssp CHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c--cchHHHHHHHHHHHHcccHHHHHH
Confidence 3668999987663 4788899999999999999999999999988874 2 256789999999999999999999
Q ss_pred HHHHHHhCC--------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 191 TFYRMKQFR--------------CRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 191 l~~~M~~~g--------------~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.|++..+.. ..| +...|..+-..+.+.|++++|.+.|++.....
T Consensus 93 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 93 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999998742 111 22678888899999999999999999998755
No 57
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.17 E-value=0.00016 Score=49.80 Aligned_cols=99 Identities=13% Similarity=0.010 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
...+..+...+...|++++|...|++..+.. +. +...+..+-.+|.+.|++++|.+.+++..+.. +.+...|..+-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CC--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 4567778888999999999999999998764 22 56678999999999999999999999988753 33578888899
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCC
Q 047392 212 NALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
..+.+.|+.++|.+.|++.....
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999999998754
No 58
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.16 E-value=1.5e-05 Score=65.18 Aligned_cols=144 Identities=15% Similarity=0.128 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC-----CCCCcCHHHHHHHHHHHH
Q 047392 112 INKATEFYHWVERFF------HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG-----NGELVTTSTVTCLIKVLG 180 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~------~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~t~~~li~~~~ 180 (258)
+++|.++|++..+.. .......++..+-..+...|++++|.+.+++..+.. ........++..+...|.
T Consensus 43 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (311)
T 3nf1_A 43 YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG 122 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 457777777765310 122345678888899999999999999999887651 111224567899999999
Q ss_pred hcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC------CCCCCCC-HHHHHH
Q 047392 181 EEGLVNEALATFYRMKQF------RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELP------GFRCPPD-VYTYTI 246 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~------g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~------~~~~~pd-~~ty~~ 246 (258)
..|++++|.+.|++..+. +-.| ....|..+-..+.+.|++++|.++|++.... +.. |+ ..++..
T Consensus 123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 200 (311)
T 3nf1_A 123 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD--PNVAKTKNN 200 (311)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC--HHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHH
Confidence 999999999999998763 2223 4566888889999999999999999999764 211 43 346778
Q ss_pred HHHHHHHcCCC
Q 047392 247 LISSYCKYGMQ 257 (258)
Q Consensus 247 li~~~~~~g~~ 257 (258)
+-..|.+.|+.
T Consensus 201 la~~~~~~g~~ 211 (311)
T 3nf1_A 201 LASCYLKQGKF 211 (311)
T ss_dssp HHHHHHHHTCH
T ss_pred HHHHHHHcCCH
Confidence 88888888864
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.14 E-value=0.00014 Score=55.00 Aligned_cols=125 Identities=14% Similarity=-0.026 Sum_probs=101.9
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
...++|++.+...... .+-+...+..+-..+...++.+.|.+.+.+..+.. + -+...+..+-.+|.+.|++++|+
T Consensus 53 ~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~--~~~~~~~~lg~~~~~~g~~~~A~ 127 (184)
T 3vtx_A 53 GLPNDAIESLKKFVVL--DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-T--VYADAYYKLGLVYDSMGEHDKAI 127 (184)
T ss_dssp TCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c--cchHHHHHHHHHHHHhCCchhHH
Confidence 3467999999988753 23456677778888899999999999999988764 2 25668999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHH
Q 047392 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty 244 (258)
+.|++..+.. +-+..+|..+-..|.+.|+.++|.+.|++..+.. |+-..|
T Consensus 128 ~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~a~~ 177 (184)
T 3vtx_A 128 EAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE----EKKAKY 177 (184)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----HHHHHH
T ss_pred HHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC----ccCHHH
Confidence 9999988753 3467889999999999999999999999998743 765444
No 60
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.13 E-value=5.7e-05 Score=66.90 Aligned_cols=136 Identities=17% Similarity=0.119 Sum_probs=111.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCC--------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhc
Q 047392 111 GINKATEFYHWVERFFHFFHN--------EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEE 182 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~--------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~ 182 (258)
.+++|+++|+++.+. .|+ ..+|..+-..+...|++++|.+.|++..+.. | +..+|..+-..|...
T Consensus 217 ~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~--~~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSA---NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--P--TPNSYIFLALTLADK 289 (537)
T ss_dssp HHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C--CHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHH---CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--C--CchHHHHHHHHHHHh
Confidence 477899999988743 244 3356677788889999999999999998863 4 466899999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 183 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
|++++|.+.|++..+.. +.+..+|..+-..+.+.|++++|.+.|++.....- -+...|..+-..|.+.|+.
T Consensus 290 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~g~~ 360 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP---ENVYPYIQLACLLYKQGKF 360 (537)
T ss_dssp SCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCSHHHHHHHHHHHHTTCH
T ss_pred cCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCH
Confidence 99999999999998753 34678899999999999999999999999988541 3456888888888888874
No 61
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.10 E-value=4.2e-05 Score=56.68 Aligned_cols=140 Identities=8% Similarity=-0.007 Sum_probs=104.5
Q ss_pred cccccCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC
Q 047392 106 QKVTLGINKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL 184 (258)
Q Consensus 106 ~~~~~~~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~ 184 (258)
+....++++|++.|+.... ..|+ ...+-.+-..|.+.|++++|.+.|++..+.. | -+..+|..+-.+|.+.|+
T Consensus 7 ~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p-~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--E-RDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTC
T ss_pred HHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcCc
Confidence 3344457788888887652 2233 3345567788999999999999999998874 2 266789999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHhHhCCCCCCCC-HHHHHHHHHHHHHcCC
Q 047392 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL-LEQMELPGFRCPPD-VYTYTILISSYCKYGM 256 (258)
Q Consensus 185 ~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~-f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~ 256 (258)
+++|...|++..+.. +-+...|..+-..|.+.|+.++|.+. +++..+.. |+ ...|...-..+.+.|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~----P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF----PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS----TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHhCc
Confidence 999999999988743 23577888899999999999876665 57776633 54 5567766666666664
No 62
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.10 E-value=6.2e-05 Score=51.47 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP--DVYAYNV 209 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p--~~~ty~~ 209 (258)
...|..+-..+.+.|++++|...|++..+... .+...|..+-.+|...|++++|.+.|++..+.. +. +...|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP---EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 44566777888999999999999999888642 256688999999999999999999999998753 22 5788899
Q ss_pred HHHHHHHc-CCHHHHHHHHHHhHhCC
Q 047392 210 VINALCRV-GNFNKARFLLEQMELPG 234 (258)
Q Consensus 210 li~~~~~~-g~~~~a~~~f~~M~~~~ 234 (258)
+-..+.+. |+.++|.+.|++.....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999999 99999999999998765
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.10 E-value=0.00018 Score=59.69 Aligned_cols=138 Identities=8% Similarity=-0.057 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.++|.++|++... .+.| +...|..+...+.+.|++++|.++|++..+. .|.-....|..+...+.+.|++++|.+
T Consensus 80 ~~~A~~~~~rAl~--~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~ 155 (308)
T 2ond_A 80 SDEAANIYERAIS--TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHT--TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred hHHHHHHHHHHHH--HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHH
Confidence 3689999999874 1335 4568999999999999999999999999874 232112379999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALC-RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~-~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
+|++..+.. +.+...|........ ..|+.++|..+|++..... .-+...|..++..+.+.|+.
T Consensus 156 ~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~ 219 (308)
T 2ond_A 156 IFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNED 219 (308)
T ss_dssp HHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHCCCH
Confidence 999998753 234455543333322 2699999999999998753 13567788888888888764
No 64
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.08 E-value=0.00016 Score=51.88 Aligned_cols=101 Identities=13% Similarity=0.038 Sum_probs=85.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~ 213 (258)
.|...-..+.+.|++++|.+.|++..+.. .-+...|..+-.+|.+.|++++|++.|++..+.. +.+...|..+-.+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD---PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 45566778899999999999999988764 1267789999999999999999999999988743 3457889999999
Q ss_pred HHHcCCHHHHHHHHHHhHhCCCCCCCCHH
Q 047392 214 LCRVGNFNKARFLLEQMELPGFRCPPDVY 242 (258)
Q Consensus 214 ~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ 242 (258)
+...|++++|.+.|++..+.. |+-.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~----P~~~ 115 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD----PSNE 115 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----TTCH
T ss_pred HHHCCCHHHHHHHHHHHHHHC----cCCH
Confidence 999999999999999998743 6644
No 65
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.06 E-value=0.00042 Score=55.53 Aligned_cols=132 Identities=13% Similarity=0.089 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|++.|++..+.. +.+...|..+...+.+.|++++|.+.+++..+.+..+......|..+-..|...|++++|.+
T Consensus 18 ~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 95 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQ 95 (272)
T ss_dssp CHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHH
Confidence 3679999999987532 22344788888899999999999999999988543343445568999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHH
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li 248 (258)
.|++..+.. +-+...|..+-..+.+.|++++|.+.|++.....- -+...|..+-
T Consensus 96 ~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~l~ 149 (272)
T 3u4t_A 96 QYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT---TDPKVFYELG 149 (272)
T ss_dssp HHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC---CCHHHHHHHH
T ss_pred HHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC---CcHHHHHHHH
Confidence 999988743 23567899999999999999999999999987531 3444555554
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.05 E-value=4.5e-05 Score=67.62 Aligned_cols=133 Identities=11% Similarity=-0.039 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhc---------C
Q 047392 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEE---------G 183 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~---------g 183 (258)
++|++.|++..+.. +-+...|..+-..|.+.|++++|.+.|++..+.. | +...+..+-..|... |
T Consensus 120 ~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p--~~~~~~~lg~~~~~~~~~~~~~~~g 193 (474)
T 4abn_A 120 PEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--K--NKVSLQNLSMVLRQLQTDSGDEHSR 193 (474)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--C--CHHHHHHHHHHHTTCCCSCHHHHHH
T ss_pred HHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--C--CHHHHHHHHHHHHHhccCChhhhhh
Confidence 46666666554321 1234556666666666666666666666655432 3 344555666666665 6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHhHhCCCCCCC----CHHHHHHHHHHH
Q 047392 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRV--------GNFNKARFLLEQMELPGFRCPP----DVYTYTILISSY 251 (258)
Q Consensus 184 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~--------g~~~~a~~~f~~M~~~~~~~~p----d~~ty~~li~~~ 251 (258)
++++|.+.|++..+.. +-+...|..+-..|... |++++|.+.|++..... | +...|..+-..|
T Consensus 194 ~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~lg~~~ 268 (474)
T 4abn_A 194 HVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD----RKASSNPDLHLNRATLH 268 (474)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC----GGGGGCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC----CCcccCHHHHHHHHHHH
Confidence 6666666666655432 22345555555555555 55666666666665532 4 445555555555
Q ss_pred HHcCC
Q 047392 252 CKYGM 256 (258)
Q Consensus 252 ~~~g~ 256 (258)
.+.|+
T Consensus 269 ~~~g~ 273 (474)
T 4abn_A 269 KYEES 273 (474)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 55554
No 67
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.04 E-value=7.3e-05 Score=62.43 Aligned_cols=133 Identities=11% Similarity=-0.067 Sum_probs=94.7
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047392 116 TEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRM 195 (258)
Q Consensus 116 ~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M 195 (258)
++.|++.... + .++..++..+-..+...|++++|++++.+-.+.|-. .-+...+-.++..|.+.|+.+.|.+++++|
T Consensus 86 ~~~l~~l~~~-~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~-~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 86 IEELENLLKD-K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA-EGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CHHHHHTTTT-S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-cCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555554422 2 456666667778888999999999999887665421 125667888899999999999999999999
Q ss_pred HhCCCCC-----CHHHHHHHHHHHHH--cC--CHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 196 KQFRCRP-----DVYAYNVVINALCR--VG--NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 196 ~~~g~~p-----~~~ty~~li~~~~~--~g--~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
.+. .| +-.+..-|..+++. .| +..+|..+|+++.+.. |+..+-..++.++.+.|++
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~----p~~~~~~lLln~~~~~g~~ 227 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF----PTWKTQLGLLNLHLQQRNI 227 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS----CSHHHHHHHHHHHHHHTCH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC----CCcccHHHHHHHHHHcCCH
Confidence 774 46 35666666666333 34 8999999999987654 7755555566677777765
No 68
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.04 E-value=8.9e-05 Score=55.92 Aligned_cols=117 Identities=9% Similarity=-0.018 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH-HHhcCCh--HHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV-LGEEGLV--NEA 188 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~-~~~~g~~--~~a 188 (258)
.++|++.|++.... -+.+...|..+-..+...|++++|...|++..+.. | .+...+..+-.+ |...|++ ++|
T Consensus 26 ~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p-~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 26 PEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--G-ENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--C-SCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHhcCCcchHHH
Confidence 44677777776543 23467788999999999999999999999988764 1 155678888888 7799998 999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.+.|++..+.. +-+...|..+-..+.+.|++++|...|++.....
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999998753 2356788888899999999999999999998754
No 69
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.03 E-value=0.00013 Score=54.39 Aligned_cols=103 Identities=10% Similarity=-0.051 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
...+..+-..+.+.|++++|.+.|++..+.. | -+...|..+-.+|.+.|++++|.+.|++..+.. +-+...|..+=
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--F-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 3356667778899999999999999998874 2 266789999999999999999999999998743 33578888999
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH
Q 047392 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVY 242 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ 242 (258)
.+|.+.|+.++|...|++..... ||..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~----~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS----NDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----CCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC----CCHH
Confidence 99999999999999999999854 7764
No 70
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.00 E-value=0.00038 Score=49.22 Aligned_cols=96 Identities=16% Similarity=0.040 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~ 212 (258)
..|..+-..+.+.|++++|.+.|++..+.. | -+...|..+-.+|.+.|++++|++.|++..+.. +-+...|..+-.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--P-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--C-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 456667778889999999999999988864 1 256789999999999999999999999988753 335778888889
Q ss_pred HHHHcCCHHHHHHHHHHhHh
Q 047392 213 ALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 213 ~~~~~g~~~~a~~~f~~M~~ 232 (258)
++...|++++|.+.|++...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 99999999999999999876
No 71
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=0.00044 Score=49.78 Aligned_cols=100 Identities=12% Similarity=-0.023 Sum_probs=85.5
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT----TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ 205 (258)
.+...+..+-..+.+.|++++|.+.|++..+.. | + ...|..+-.+|...|++++|.+.+++..+.. +.+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 100 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--A--TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVK 100 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--C--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--c--cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHH
Confidence 456778888899999999999999999998753 3 4 5678899999999999999999999987642 23677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 206 AYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 206 ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.|..+-..+.+.|+.++|...|++.....
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 88888899999999999999999998754
No 72
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.00 E-value=0.0015 Score=52.55 Aligned_cols=127 Identities=14% Similarity=0.098 Sum_probs=99.4
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh----
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFAR----GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE---- 181 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~---- 181 (258)
.+.++|++.|++..+. + +...+..+-..|.+ .++.++|.+.|++..+.+ +...+..+-..|..
T Consensus 92 ~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~~ 162 (273)
T 1ouv_A 92 QNTNKALQYYSKACDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-----DGDGCTILGSLYDAGRGT 162 (273)
T ss_dssp CCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSS
T ss_pred cCHHHHHHHHHHHHHc-C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHcCCCC
Confidence 3467899999888743 2 67778888888888 899999999999988876 44567778788887
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~----~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
.++.++|.+.|++..+.+ +...+..+-..|.+ .++.++|.+.|++..+.+ | ...+..+-..|.+
T Consensus 163 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~-~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 163 PKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----N-GGGCFNLGAMQYN 230 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----C-HHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----C-HHHHHHHHHHHHc
Confidence 889999999999988765 56777778888888 899999999999988765 4 4556566666655
No 73
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.99 E-value=0.001 Score=53.57 Aligned_cols=128 Identities=12% Similarity=0.088 Sum_probs=75.0
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh---
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFAR----GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE--- 181 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~--- 181 (258)
..+.++|++.|++..+. + +...+..+-..+.+ .++.++|.+.|++..+.+ +...+..+-..|..
T Consensus 55 ~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDL-N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----YAEGCASLGGIYHDGKV 125 (273)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-----CccHHHHHHHHHHcCCC
Confidence 33466666666665532 2 45556666666666 666666666666666554 44456666666666
Q ss_pred -cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 182 -EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 182 -~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~----~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
.++.++|.+.|++..+.+ +...+..+-..|.+ .++.++|...|++..+.+ +...+..+-..|.+
T Consensus 126 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-----DSPGCFNAGNMYHH 194 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHc
Confidence 666666666666666654 44555555555555 666666666666666543 23344444444444
No 74
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.97 E-value=0.00016 Score=65.19 Aligned_cols=132 Identities=11% Similarity=-0.111 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 047392 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~ 192 (258)
++|.+.|++..+. -+-+...|..+-..+.+.|++++|.+.|++..+.. | -+...|..+-.+|...|++++|.+.|
T Consensus 6 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 6 PRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--P-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--T-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3555555544321 11234455555555556666666666666555442 1 13445555555666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC-CHHHHHHHHHHHHHc
Q 047392 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP-DVYTYTILISSYCKY 254 (258)
Q Consensus 193 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p-d~~ty~~li~~~~~~ 254 (258)
++..+.. +-+...|..+-..+.+.|+.++|.+.|++..+.. | +...+..+...+.+.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL----PEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHh
Confidence 6555432 2234555555555666666666666666655432 2 344455555555554
No 75
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.97 E-value=0.00039 Score=49.65 Aligned_cols=99 Identities=14% Similarity=0.007 Sum_probs=85.8
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 209 (258)
.+...|..+-..+.+.|++++|...|++..+.. | -+...|..+-.+|...|++++|...|++..+.. +-+...|..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 82 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--P-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFF 82 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--c-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHH
Confidence 467788888999999999999999999988874 2 256789999999999999999999999988753 336778889
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHh
Q 047392 210 VINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 210 li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
+-..+.+.|++++|...|++...
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 76
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.93 E-value=0.00062 Score=56.82 Aligned_cols=140 Identities=11% Similarity=-0.105 Sum_probs=97.5
Q ss_pred cCHHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---cCHHHHHHHHHH--HHhcC
Q 047392 110 LGINKATEFYHWVERFFHF-FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGEL---VTTSTVTCLIKV--LGEEG 183 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~-~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~t~~~li~~--~~~~g 183 (258)
.+.++|++.+++.... +- .-+...+-.++..+.+.|+.+.|.+.+++|.+.. |+ .+..+...|..+ ....|
T Consensus 114 g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~--~d~~~~~d~~l~~Laea~v~l~~g 190 (310)
T 3mv2_B 114 GDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI--EDTVSGDNEMILNLAESYIKFATN 190 (310)
T ss_dssp TCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--ccccccchHHHHHHHHHHHHHHhC
Confidence 3367999999887422 21 1256678889999999999999999999998762 20 024466666666 33334
Q ss_pred --ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC---------CCCCCCHHHHHHHHHHHH
Q 047392 184 --LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG---------FRCPPDVYTYTILISSYC 252 (258)
Q Consensus 184 --~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~---------~~~~pd~~ty~~li~~~~ 252 (258)
+..+|..+|+++.+. .|+..+-..++.++.+.|++++|++.++.+...- -+ -|..+.--+|....
T Consensus 191 ~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p--~~~~~LaN~i~l~~ 266 (310)
T 3mv2_B 191 KETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL--YKPTFLANQITLAL 266 (310)
T ss_dssp CSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS--SHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC--CCHHHHHHHHHHHH
Confidence 899999999999765 3665555666668999999999999999876531 01 35556645554444
Q ss_pred HcCC
Q 047392 253 KYGM 256 (258)
Q Consensus 253 ~~g~ 256 (258)
..|+
T Consensus 267 ~lgk 270 (310)
T 3mv2_B 267 MQGL 270 (310)
T ss_dssp HTTC
T ss_pred HhCh
Confidence 4443
No 77
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.92 E-value=0.00021 Score=52.73 Aligned_cols=98 Identities=7% Similarity=-0.071 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
...+..+-..+.+.|++++|...|++..+.. ..+...|..+-.+|...|++++|.+.|++..+.. +-+...|..+-
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg 96 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD---HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 4456667788899999999999999988764 1266688889999999999999999999988743 33667888888
Q ss_pred HHHHHcCCHHHHHHHHHHhHhC
Q 047392 212 NALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
.++...|++++|...|++....
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.92 E-value=0.00016 Score=64.09 Aligned_cols=132 Identities=11% Similarity=-0.032 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNV-KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
++++++.+++... .-+.+...|..+-..+...|++ ++|.+.|++..+.. | -+...|..+-.+|.+.|++++|.+
T Consensus 84 ~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p-~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--P-ELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--C-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5677777776653 2234678888889999999999 99999999998874 2 256789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHhHhCCCCCCC-CHHHHHHHHHHHHHc
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRV---------GNFNKARFLLEQMELPGFRCPP-DVYTYTILISSYCKY 254 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~---------g~~~~a~~~f~~M~~~~~~~~p-d~~ty~~li~~~~~~ 254 (258)
.|++..+. .|+...|..+-..+... |++++|.+.|++..... | +...|..+-..|.+.
T Consensus 159 ~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~ 226 (474)
T 4abn_A 159 CFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD----VLDGRSWYILGNAYLSL 226 (474)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHH
Confidence 99999875 48888888888999999 99999999999998854 4 466777777777654
No 79
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.91 E-value=0.00018 Score=52.41 Aligned_cols=96 Identities=8% Similarity=-0.011 Sum_probs=80.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~ 213 (258)
.+..+-..+.+.|++++|.+.|++..+... -+...|..+-.+|.+.|++++|...|++..+.. +-+...|..+-.+
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH---YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 445566778899999999999999988642 266678899999999999999999999988753 3466778888899
Q ss_pred HHHcCCHHHHHHHHHHhHhC
Q 047392 214 LCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 214 ~~~~g~~~~a~~~f~~M~~~ 233 (258)
+...|++++|...|++....
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 80
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.90 E-value=0.0004 Score=59.85 Aligned_cols=136 Identities=4% Similarity=-0.069 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN-VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.++|++.|++.... -+-+...|+.+-..+.+.|+ +++|.+.|++..+..- -+...|+.+-.+|.+.|++++|+.
T Consensus 113 ~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P---~~~~a~~~~g~~~~~~g~~~eAl~ 187 (382)
T 2h6f_A 113 SERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP---KNYQVWHHRRVLVEWLRDPSQELE 187 (382)
T ss_dssp CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred hHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHccCHHHHHH
Confidence 35888888887643 12346778888888888896 9999999999888642 156678888888999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH-cCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK-YGM 256 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~-~g~ 256 (258)
.|+++.+.. +-+...|..+-..+.+.|++++|...|+++....- -+...|+.+-..|.+ .|.
T Consensus 188 ~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P---~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 188 FIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV---RNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCc
Confidence 999988743 34677888888888889999999999999988551 245677777777776 443
No 81
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.90 E-value=0.00038 Score=51.19 Aligned_cols=116 Identities=12% Similarity=-0.011 Sum_probs=58.0
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
...+++|.+.|++.... .+.+...|..+...+.+.|++++|.+.+++..+.. + .+...|..+-.+|.+.|++++|
T Consensus 26 ~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~--~~~~~~~~~a~~~~~~~~~~~A 100 (166)
T 1a17_A 26 AKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-K--KYIKGYYRRAASNMALGKFRAA 100 (166)
T ss_dssp TTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c--ccHHHHHHHHHHHHHhccHHHH
Confidence 34455566666555432 12244555555555556666666666665555542 1 1344555555556666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHh
Q 047392 189 LATFYRMKQFRCRPDVYAYN--VVINALCRVGNFNKARFLLEQM 230 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~--~li~~~~~~g~~~~a~~~f~~M 230 (258)
.+.|++..+.. +-+...+. .+...+.+.|++++|.+.+.+.
T Consensus 101 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 101 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666555421 11222332 2222244555666666655544
No 82
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.89 E-value=0.00024 Score=52.95 Aligned_cols=100 Identities=9% Similarity=-0.046 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 210 (258)
+...|..+-..+.+.|++++|.+.|++..+..- -+...|..+-.+|.+.|++++|++.|++..+.. +-+...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP---ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 455677788889999999999999999888741 266789999999999999999999999988753 3357888899
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 211 INALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 211 i~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
-..+.+.|++++|.+.|++.....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999987643
No 83
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.88 E-value=0.00071 Score=47.67 Aligned_cols=95 Identities=11% Similarity=-0.038 Sum_probs=74.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHH
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD----VYAYNVVINA 213 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~----~~ty~~li~~ 213 (258)
+-..+.+.|++++|.+.|++..+...........+..+-.+|.+.|++++|...|++..+.. |+ ...+..+-.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHH
Confidence 45567789999999999999888642211111467778888999999999999999987743 43 5667778888
Q ss_pred HHHcCCHHHHHHHHHHhHhCC
Q 047392 214 LCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 214 ~~~~g~~~~a~~~f~~M~~~~ 234 (258)
+.+.|+.++|...|++.....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999998754
No 84
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.88 E-value=0.00055 Score=50.33 Aligned_cols=98 Identities=10% Similarity=-0.014 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~ 212 (258)
..|..+-..+...|++++|...|++..+... .+..++..+-.+|...|++++|.+.|++..+.. +.+...|..+-.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP---SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 4567777888899999999999999887641 256789999999999999999999999988753 346778888999
Q ss_pred HHHHcCCHHHHHHHHHHhHhCC
Q 047392 213 ALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 213 ~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.+.+.|++++|...|++.....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhccHHHHHHHHHHHHHhC
Confidence 9999999999999999998754
No 85
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.87 E-value=0.00074 Score=46.71 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+++|.+.|+++... .+.+...+..+...+.+.|++++|...++++.+.. + .+..++..+...|...|++++|.+.
T Consensus 25 ~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~--~~~~~~~~la~~~~~~~~~~~A~~~ 99 (125)
T 1na0_A 25 YDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-P--NNAEAWYNLGNAYYKQGDYDEAIEY 99 (125)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-C--ccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66999999998754 23467788999999999999999999999998874 2 2567899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHH
Q 047392 192 FYRMKQFRCRPDVYAYNVVINAL 214 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~ 214 (258)
|+++.+.. +-+...+..+-..+
T Consensus 100 ~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 100 YQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHH
Confidence 99998643 22344444443333
No 86
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.86 E-value=0.00034 Score=57.54 Aligned_cols=138 Identities=11% Similarity=-0.074 Sum_probs=100.5
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHH-HHHHHHHhcCChHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT-CLIKVLGEEGLVNEA 188 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~-~li~~~~~~g~~~~a 188 (258)
.+.++|.+.|++..... +-+...+..+...+.+.|+.++|.+.+++..+.. | +..... .....+...++.++|
T Consensus 131 g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p--~~~~~~~~~~~~l~~~~~~~~a 204 (287)
T 3qou_A 131 SNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--Q--DTRYQGLVAQIELLXQAADTPE 204 (287)
T ss_dssp TCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--C--SHHHHHHHHHHHHHHHHTSCHH
T ss_pred CCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--c--chHHHHHHHHHHHHhhcccCcc
Confidence 34668888888876431 2345677778888888888888888888775542 3 332222 222236677778888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC---HHHHHHHHHHHHHcCCCC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD---VYTYTILISSYCKYGMQT 258 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd---~~ty~~li~~~~~~g~~~ 258 (258)
.+.|++..+.. +-+...+..+-..+...|+.++|...|.+..... |+ ...+..+...|...|+.+
T Consensus 205 ~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~----p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 205 IQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD----LTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc----cccccchHHHHHHHHHHHcCCCC
Confidence 88888876642 3467888889999999999999999999999865 54 567899999998888754
No 87
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.85 E-value=0.00061 Score=53.38 Aligned_cols=102 Identities=14% Similarity=-0.085 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 209 (258)
.|...|...-..+.+.|++++|.+.|++..+....+ +...+..+-.+|.+.|++++|++.|++..+.. +-+...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ--DSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC--CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHH
Confidence 355677778888999999999999999998875223 66677779999999999999999999998753 225677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 210 VINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 210 li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
+-..+.+.|+.++|.+.|++.....
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV 106 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC
Confidence 8899999999999999999998754
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.83 E-value=0.0009 Score=53.70 Aligned_cols=138 Identities=9% Similarity=-0.031 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh--------
Q 047392 111 GINKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE-------- 181 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~-------- 181 (258)
.+++|++.|++......-.|. ...+..+-.++.+.|++++|...|++..+...........+..+-.++.+
T Consensus 30 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~ 109 (261)
T 3qky_A 30 KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELD 109 (261)
T ss_dssp CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSC
T ss_pred CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccccc
Confidence 367999999999854311111 56777888899999999999999999988632111123457777788888
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-HHHH-----------------HHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC---
Q 047392 182 EGLVNEALATFYRMKQFRCRPD-VYAY-----------------NVVINALCRVGNFNKARFLLEQMELPGFRCPPD--- 240 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g~~p~-~~ty-----------------~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd--- 240 (258)
.|++++|.+.|++..+.. |+ ...+ -.+-..|.+.|++++|...|++..... |+
T Consensus 110 ~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~~~ 183 (261)
T 3qky_A 110 QTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY----PDTPW 183 (261)
T ss_dssp CHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTSTT
T ss_pred chhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC----CCCch
Confidence 999999999999998642 43 2233 344667889999999999999998754 54
Q ss_pred -HHHHHHHHHHHHHc
Q 047392 241 -VYTYTILISSYCKY 254 (258)
Q Consensus 241 -~~ty~~li~~~~~~ 254 (258)
...+..+-.+|.+.
T Consensus 184 ~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 184 ADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 34566666666654
No 89
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.82 E-value=0.00043 Score=61.86 Aligned_cols=74 Identities=16% Similarity=0.069 Sum_probs=38.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC--HHHHHHHHHHHHHcCC
Q 047392 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD--VYTYTILISSYCKYGM 256 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd--~~ty~~li~~~~~~g~ 256 (258)
..|+.++|.++|++..+.. +-+...|..++..+.+.|+.++|..+|++....+- ..|+ ...|...+.-..+.|+
T Consensus 403 ~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~-~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS-LPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC-SCGGGCHHHHHHHHHHHHHSSC
T ss_pred HcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHcCC
Confidence 3555555555555544321 12345556666666666666666666666655421 1122 3355555555555554
No 90
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.82 E-value=0.00057 Score=52.76 Aligned_cols=116 Identities=13% Similarity=-0.027 Sum_probs=92.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~ 214 (258)
+..+-..+.+.|++++|.+.|++. +.+ +...|..+-.+|.+.|++++|.+.|++..+.. +.+...|..+-..+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 445666778899999999999876 334 67789999999999999999999999988753 34678899999999
Q ss_pred HHcCCHHHHHHHHHHhHhCCCC------------CCC-CHHHHHHHHHHHHHcCCC
Q 047392 215 CRVGNFNKARFLLEQMELPGFR------------CPP-DVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 215 ~~~g~~~~a~~~f~~M~~~~~~------------~~p-d~~ty~~li~~~~~~g~~ 257 (258)
.+.|++++|.+.|++.....-. ..| +...|..+-..|.+.|+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH
Confidence 9999999999999999875311 001 125677777778877764
No 91
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.79 E-value=0.00041 Score=64.80 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
..+|+.|-..+.+.|++++|.+.|++..+.. | -+...|+.|-.+|.+.|++++|++.|++..+.. +-+...|+.+=
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF--P-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 5678999999999999999999999988863 2 156789999999999999999999999988743 23478899999
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCC
Q 047392 212 NALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~ 257 (258)
..+.+.|++++|.+.|++..+.. |+ ...|..+-..|.+.|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~----P~~~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN----PAFADAHSNLASIHKDSGNI 127 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCH
Confidence 99999999999999999998754 54 56888888888888875
No 92
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.79 E-value=0.00062 Score=48.71 Aligned_cols=109 Identities=12% Similarity=0.007 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCC----HH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR--CRPD----VY 205 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g--~~p~----~~ 205 (258)
..++.-+-..+.+.|++++|.+.|++..+.. | -+...|+.+-.+|.+.|++++|++.|++..+.. ..++ ..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD--P-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 3456677888999999999999999988763 2 256789999999999999999999999986521 1222 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 206 ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
+|..+=..+...|++++|.+.|++-.... ||..+...|
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~----~~~~~~~~l 122 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEF----RDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC----cCHHHHHHH
Confidence 56666677888999999999999987643 776655443
No 93
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.73 E-value=0.00035 Score=52.81 Aligned_cols=136 Identities=10% Similarity=-0.019 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH-HHhcCChHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV-LGEEGLVNEAL 189 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~-~~~~g~~~~a~ 189 (258)
.+++|.+.|++.... -+-+...+..+-..+.+.|++++|...+++..+.. | +...+..+... +...++..+|.
T Consensus 21 ~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p--~~~~~~~~~~~~~~~~~~~~~a~ 94 (176)
T 2r5s_A 21 EHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--Q--DNSYKSLIAKLELHQQAAESPEL 94 (176)
T ss_dssp CHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--C--CHHHHHHHHHHHHHHHHTSCHHH
T ss_pred CHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--C--ChHHHHHHHHHHHHhhcccchHH
Confidence 366899999875432 12356778888899999999999999998876542 3 33223222111 22333444578
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC---HHHHHHHHHHHHHcCCCC
Q 047392 190 ATFYRMKQFRCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD---VYTYTILISSYCKYGMQT 258 (258)
Q Consensus 190 ~l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd---~~ty~~li~~~~~~g~~~ 258 (258)
+.|++..+. .| +...+..+-..+.+.|++++|...|++..... |+ ...+..+...|...|+.+
T Consensus 95 ~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 95 KRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVN----LGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----TTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----cccChHHHHHHHHHHHHHhCCCC
Confidence 888887763 25 57888889999999999999999999998865 54 567888888998888764
No 94
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.70 E-value=0.0014 Score=45.68 Aligned_cols=103 Identities=12% Similarity=-0.007 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+++|.+.|++.... .+.+...|..+...+...|++++|.+.+++..+.. | .+...+..+-.+|.+.|++++|.+.
T Consensus 28 ~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~A~~~ 102 (131)
T 2vyi_A 28 FEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--P-AYSKAYGRMGLALSSLNKHVEAVAY 102 (131)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--c-cCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 56999999998753 23467788889999999999999999999998863 2 2566889999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNF 220 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~ 220 (258)
|++..+.. +.+...+..+...+.+.|+.
T Consensus 103 ~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 103 YKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 99987753 23667777777777777654
No 95
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.70 E-value=0.0015 Score=58.84 Aligned_cols=118 Identities=13% Similarity=0.054 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
..++|.+.|++..+. -+-+...|..+-..+.+.|++++|.+.+++..+.. | -+...|..+-.+|.+.|++++|.+
T Consensus 38 ~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~la~~~~~~g~~~~A~~ 112 (568)
T 2vsy_A 38 DTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA--P-EHPGIALWLGHALEDAGQAEAAAA 112 (568)
T ss_dssp CHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 367999999998742 23457788889999999999999999999998874 2 256789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHhHhCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRV---GNFNKARFLLEQMELPG 234 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~---g~~~~a~~~f~~M~~~~ 234 (258)
.|++..+.. +-+...+..+...+.+. |+.++|.+.|++..+.+
T Consensus 113 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 113 AYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999988743 23577888999999999 99999999999998755
No 96
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.68 E-value=0.00078 Score=47.74 Aligned_cols=96 Identities=13% Similarity=0.014 Sum_probs=78.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~ 214 (258)
+-.+-..+.+.|++++|...|++..+.. | -+...|..+-.++...|++++|+..|++..+.. +-+...|..+-..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--P-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3445567788999999999999998864 2 256678889999999999999999999987743 23567888888999
Q ss_pred HHcCCHHHHHHHHHHhHhCC
Q 047392 215 CRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 215 ~~~g~~~~a~~~f~~M~~~~ 234 (258)
.+.|+.++|...|++.....
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998743
No 97
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.65 E-value=0.001 Score=59.39 Aligned_cols=137 Identities=8% Similarity=-0.060 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC-HHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT-TSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.++|.++|++.... -.+-+...|..+...+.+.|++++|.++|++..+.. |. + ...|......+.+.|++++|.+
T Consensus 302 ~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 302 SDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DI-DPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SS-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--cc-CchHHHHHHHHHHHHhcCHHHHHH
Confidence 45788999887631 123357888999999999999999999999998852 31 2 3579999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHhHhCCCCCCC-CHHHHHHHHHHHHHcCCC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVI-NALCRVGNFNKARFLLEQMELPGFRCPP-DVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li-~~~~~~g~~~~a~~~f~~M~~~~~~~~p-d~~ty~~li~~~~~~g~~ 257 (258)
+|++..+.. +.+...|-... -.+...|+.++|..+|++..+.. | +...|..++..+.+.|+.
T Consensus 378 ~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~----p~~~~~~~~~~~~~~~~g~~ 441 (530)
T 2ooe_A 378 IFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY----GDIPEYVLAYIDYLSHLNED 441 (530)
T ss_dssp HHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTTTCH
T ss_pred HHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC----CCCHHHHHHHHHHHHhCCCH
Confidence 999988742 11223332222 12346899999999999888753 5 577888888888887764
No 98
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.64 E-value=0.0016 Score=53.45 Aligned_cols=142 Identities=6% Similarity=-0.092 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC----HHHHHHHHHHHHhcC
Q 047392 112 INKATEFYHWVERFFHFFHNE----VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT----TSTVTCLIKVLGEEG 183 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~t~~~li~~~~~~g 183 (258)
.++|.+++++........|+. ..|..+...+...|++++|.+.|++..+.... ..+ ..+|+.+-..|...|
T Consensus 91 y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-~~~~~~~~~~~~~lg~~y~~~g 169 (293)
T 3u3w_A 91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-GIDVYQNLYIENAIANIYAENG 169 (293)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC-CSCTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHcC
Confidence 569999999987544444442 23445666677788999999999999884322 112 336999999999999
Q ss_pred ChHHHHHHHHHHHh----C-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhHh----CCCCCCCC-HHHHHHHHHHHH
Q 047392 184 LVNEALATFYRMKQ----F-RCRPDV-YAYNVVINALCRVGNFNKARFLLEQMEL----PGFRCPPD-VYTYTILISSYC 252 (258)
Q Consensus 184 ~~~~a~~l~~~M~~----~-g~~p~~-~ty~~li~~~~~~g~~~~a~~~f~~M~~----~~~~~~pd-~~ty~~li~~~~ 252 (258)
++++|.+.|++..+ . +..+.. .+|+.+-..|.+.|+.++|.+.+++... .+.. +. ..+|..+=..|.
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~--~~~~~~~~~lg~~~~ 247 (293)
T 3u3w_A 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM--ALIGQLYYQRGECLR 247 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC--TTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHHH
Confidence 99999999999874 2 222333 4788888999999999999999988764 2221 33 456777767777
Q ss_pred HcCC
Q 047392 253 KYGM 256 (258)
Q Consensus 253 ~~g~ 256 (258)
+.|+
T Consensus 248 ~~g~ 251 (293)
T 3u3w_A 248 KLEY 251 (293)
T ss_dssp HTTC
T ss_pred HhCC
Confidence 7763
No 99
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.61 E-value=0.0031 Score=51.59 Aligned_cols=146 Identities=8% Similarity=-0.063 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CcC--HHHHHHHHHHHHhcC
Q 047392 111 GINKATEFYHWVERFFHFFHNE----VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE-LVT--TSTVTCLIKVLGEEG 183 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~--~~t~~~li~~~~~~g 183 (258)
..++|.+.+++..+.....++. ..+..+...+...|+.++|.+.+++..+..... ... ..+|+.+-..|...|
T Consensus 90 ~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~ 169 (293)
T 2qfc_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG 169 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcC
Confidence 3568999998776432221111 223345566778899999999999887542211 111 458999999999999
Q ss_pred ChHHHHHHHHHHHh----CCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC----CCCCCCCHHHHHHHHHHHHH
Q 047392 184 LVNEALATFYRMKQ----FRCRP--DVYAYNVVINALCRVGNFNKARFLLEQMELP----GFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 184 ~~~~a~~l~~~M~~----~g~~p--~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~----~~~~~pd~~ty~~li~~~~~ 253 (258)
++++|.+.|++..+ .+-.+ ...+|+.+-..|.+.|++++|.+.|++.... +.. ..-..+|..+-..|.+
T Consensus 170 ~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~-~~~~~~~~~lg~~y~~ 248 (293)
T 2qfc_A 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM-ALIGQLYYQRGECLRK 248 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC-SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHH
Confidence 99999999999862 22111 1258888999999999999999999987642 111 0115677777778888
Q ss_pred cCCC
Q 047392 254 YGMQ 257 (258)
Q Consensus 254 ~g~~ 257 (258)
.|+.
T Consensus 249 ~g~~ 252 (293)
T 2qfc_A 249 LEYE 252 (293)
T ss_dssp TTCC
T ss_pred cCCc
Confidence 7765
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.59 E-value=0.0029 Score=49.08 Aligned_cols=126 Identities=14% Similarity=0.158 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhhCCCCCC-HHHHHH----------------HHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHN-EVTCKE----------------MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC 174 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~-~~~y~~----------------li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~ 174 (258)
+++|++.|++.... .|+ ...|.. +-..+.+.|++++|...|++..+.. | -+...|..
T Consensus 20 ~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~ 93 (208)
T 3urz_A 20 NGQAVSYFRQTIAL---NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA--P-NNVDCLEA 93 (208)
T ss_dssp HHHHHHHHHHHHHH---CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--C-CCHHHHHH
Confidence 56888888876642 133 234444 6777888888888888888887764 1 15667888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH-----------------------------------HHcC
Q 047392 175 LIKVLGEEGLVNEALATFYRMKQFRCRP-DVYAYNVVINAL-----------------------------------CRVG 218 (258)
Q Consensus 175 li~~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~li~~~-----------------------------------~~~g 218 (258)
+-.+|...|++++|.+.|++..+.. | +...|..+-..| ...|
T Consensus 94 lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~ 171 (208)
T 3urz_A 94 CAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTT 171 (208)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHcc
Confidence 8888888888888888888877632 3 334443333222 2345
Q ss_pred CHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 219 NFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 219 ~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
+.++|...|++..+.. |+......+-+
T Consensus 172 ~~~~A~~~~~~al~l~----P~~~~~~~l~~ 198 (208)
T 3urz_A 172 RYEKARNSLQKVILRF----PSTEAQKTLDK 198 (208)
T ss_dssp THHHHHHHHHHHTTTS----CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC----CCHHHHHHHHH
Confidence 6778888888888633 88766655544
No 101
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.57 E-value=0.0002 Score=50.28 Aligned_cols=106 Identities=11% Similarity=-0.037 Sum_probs=63.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047392 145 GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224 (258)
Q Consensus 145 ~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 224 (258)
.|++++|...|++..+.+....-+...|..+-.+|.+.|++++|.+.|++..+.. +-+...|..+-.++.+.|+.++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4667777777777766531111134567777777777788888888887776542 224566677777777778888888
Q ss_pred HHHHHhHhCCCCCCCCHHHHHHHHHHHH
Q 047392 225 FLLEQMELPGFRCPPDVYTYTILISSYC 252 (258)
Q Consensus 225 ~~f~~M~~~~~~~~pd~~ty~~li~~~~ 252 (258)
..|++.....- -.|+...|...|..|.
T Consensus 82 ~~~~~al~~~p-~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 82 ELLLKIIAETS-DDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHHC-CCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHH
Confidence 87777765431 0134444555554443
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.56 E-value=0.0029 Score=49.67 Aligned_cols=140 Identities=10% Similarity=0.036 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCH-HHHHHHHHHHH--------
Q 047392 111 GINKATEFYHWVERFFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTT-STVTCLIKVLG-------- 180 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~t~~~li~~~~-------- 180 (258)
..++|++.|+++.....-.|. ...+..+..++.+.|++++|.+.|++..+.... .+.. ..+-.+-.++.
T Consensus 19 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~~~~g~~~~~~~~~~~~ 97 (225)
T 2yhc_A 19 NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVMYMRGLTNMALDDSALQ 97 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHHHHHHHHHHhhhhhhhh
Confidence 366888888888754321222 345666778888889999999999888776321 1121 12222333333
Q ss_pred ----------hcCChHHHHHHHHHHHhCCCCCCHH-HH-----------------HHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 181 ----------EEGLVNEALATFYRMKQFRCRPDVY-AY-----------------NVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 181 ----------~~g~~~~a~~l~~~M~~~g~~p~~~-ty-----------------~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..|+.++|...|++..+. .|+.. .+ -.+-..+.+.|++++|...|+++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 175 (225)
T 2yhc_A 98 GFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLR 175 (225)
T ss_dssp ----------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 257888888888888764 24321 22 1233456788888999999988887
Q ss_pred CCCCCCCCH----HHHHHHHHHHHHcCCC
Q 047392 233 PGFRCPPDV----YTYTILISSYCKYGMQ 257 (258)
Q Consensus 233 ~~~~~~pd~----~ty~~li~~~~~~g~~ 257 (258)
.. |+. ..+..+..+|.+.|+.
T Consensus 176 ~~----p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 176 DY----PDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp HS----TTSHHHHHHHHHHHHHHHHTTCH
T ss_pred HC----cCCCccHHHHHHHHHHHHHcCCc
Confidence 53 543 3566677777777764
No 103
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.56 E-value=0.0022 Score=55.21 Aligned_cols=119 Identities=3% Similarity=-0.039 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL-VNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~-~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
..|+.+-..+.+.|+.++|.+.+++..+.. | -+...|+.+-.++.+.|+ +++|++.|++..+.. +-+...|+.+-
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--A-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--c-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 346667777888999999999999998874 2 256689999999999997 999999999998743 23678899999
Q ss_pred HHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCCC
Q 047392 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~~ 258 (258)
..+.+.|++++|...|++.....- -+...|..+-..+.+.|+++
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP---~~~~a~~~lg~~~~~~g~~~ 217 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA---KNYHAWQHRQWVIQEFKLWD 217 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc---cCHHHHHHHHHHHHHcCChH
Confidence 999999999999999999998541 35667888888888888764
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.54 E-value=0.0025 Score=49.50 Aligned_cols=107 Identities=10% Similarity=-0.007 Sum_probs=83.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTC----------------LIKVLGEEGLVNEALATFYRMKQFRCR 201 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~----------------li~~~~~~g~~~~a~~l~~~M~~~g~~ 201 (258)
.-..+.+.|++++|...|++..+.. | -+...|.. +-.+|.+.|++++|...|++..+.. +
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 85 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALN--I-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-P 85 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--H-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--C-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C
Confidence 3345678999999999999988763 2 13334555 8889999999999999999988743 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHH
Q 047392 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYC 252 (258)
Q Consensus 202 p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~ 252 (258)
-+...|..+-..+...|++++|...|++..... |+ ...|..+-..|.
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE----ADNLAANIFLGNYYY 133 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHH
Confidence 367888999999999999999999999998854 54 456666555544
No 105
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.54 E-value=0.0027 Score=44.49 Aligned_cols=101 Identities=7% Similarity=-0.093 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
+++|++.|++.... .+.+...|..+...+...|++++|.+.+++..+.. | .+...+..+-.+|.+.|++++|.+.
T Consensus 32 ~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~-~~~~~~~~la~~~~~~~~~~~A~~~ 106 (133)
T 2lni_A 32 YPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--P-TFIKGYTRKAAALEAMKDYTKAMDV 106 (133)
T ss_dssp SHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--C-CchHHHHHHHHHHHHHhhHHHHHHH
Confidence 45899999998742 23467888889999999999999999999998864 2 2566899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVG 218 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g 218 (258)
|++..+.. +-+...+..+-..+.+.|
T Consensus 107 ~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 107 YQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 99987642 123455666656655544
No 106
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.52 E-value=0.0021 Score=54.08 Aligned_cols=117 Identities=15% Similarity=0.043 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT--------------TSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--------------~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
...|..+-..+.+.|++++|...|++..+.. |... ...|..+-.+|.+.|++++|++.|++..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456667777777888888888887776653 2111 45777778888888888888888888766
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcC
Q 047392 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYG 255 (258)
Q Consensus 198 ~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g 255 (258)
.. +-+...|..+-.+|.+.|++++|...|++..... |+ ...+..+-..+.+.|
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY----PNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SSCHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHH
Confidence 42 3356777777777888888888888888877643 43 445555555554443
No 107
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.51 E-value=0.0038 Score=52.48 Aligned_cols=115 Identities=9% Similarity=-0.044 Sum_probs=94.1
Q ss_pred cCHHHHHHHHHHHHhhCCCCCC----------------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHN----------------EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~----------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~ 173 (258)
...++|++.|++..... |+ ...|..+-.++.+.|++++|.+.+++..+.. | -+...|.
T Consensus 161 g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p-~~~~a~~ 234 (336)
T 1p5q_A 161 GKYKQALLQYKKIVSWL---EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--S-NNEKGLS 234 (336)
T ss_dssp TCHHHHHHHHHHHHHHT---TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHH
T ss_pred CCHHHHHHHHHHHHHHh---hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CcHHHHH
Confidence 34679999999877432 33 4788999999999999999999999998874 2 2677899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHhH
Q 047392 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQME 231 (258)
Q Consensus 174 ~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a-~~~f~~M~ 231 (258)
.+-.+|...|++++|.+.|++..+.. +-+...+..+-..+.+.|+.++| ..+|+.|.
T Consensus 235 ~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 235 RRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988742 23567888888999999999988 55666664
No 108
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.50 E-value=0.004 Score=51.02 Aligned_cols=123 Identities=9% Similarity=-0.028 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHhhC---CCCC-CHHHHHHHHHHHHcc-CChHHHHHHHHHHHHcCC--C-CCcCHHHHHHHHHHHHhc
Q 047392 111 GINKATEFYHWVERFF---HFFH-NEVTCKEMGIVFARG-NNVKGLWDFLKEMSRRGN--G-ELVTTSTVTCLIKVLGEE 182 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~---~~~p-~~~~y~~li~~~~~~-g~~~~a~~~~~~m~~~g~--~-~~~~~~t~~~li~~~~~~ 182 (258)
..++|++.|++...-. |-.. -..+|+.+-..|... |++++|.+.|++-.+... . +.....+|+.+-..|.+.
T Consensus 92 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD 171 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 3557777766654211 1101 145788888889886 999999999988765411 0 000134688899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 183 GLVNEALATFYRMKQFRCRPDV------YAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 183 g~~~~a~~l~~~M~~~g~~p~~------~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
|++++|++.|++..+..-.... ..|..+..++...|+.++|...|++....
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999998874322221 15677778888999999999999998863
No 109
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.49 E-value=0.0027 Score=46.91 Aligned_cols=111 Identities=12% Similarity=-0.021 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHc-------CCCC--------CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRR-------GNGE--------LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~--------~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
..+...-..+.+.|++++|.+.|.+..+. .-.. ..+...|..+-.+|.+.|++++|+..+++..+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34666777888999999999999887664 0000 11345788899999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH-HHHHHH
Q 047392 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY-TYTILI 248 (258)
Q Consensus 198 ~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~-ty~~li 248 (258)
.. +-+...|..+-.++...|++++|...|++..... |+-. .....+
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~----p~~~~~~~~~l 138 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH----PAAASVVAREM 138 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----GGGHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC----CCCHHHHHHHH
Confidence 53 3467888889999999999999999999998744 7654 444333
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.48 E-value=0.00033 Score=51.69 Aligned_cols=107 Identities=11% Similarity=-0.046 Sum_probs=84.0
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047392 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222 (258)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~ 222 (258)
...|++++|.+.+....... | -+...+-.+-..|.+.|++++|.+.|++..+.. +-+...|..+-..+.+.|++++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~--p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSP--R-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSH--H-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcChHHHHHHHHHHhcccC--c-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 34577888888887764431 1 123346678889999999999999999988743 3467889999999999999999
Q ss_pred HHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCC
Q 047392 223 ARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 223 a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~ 257 (258)
|...|++..+.. |+ ...|..+-..|.+.|+.
T Consensus 84 A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~ 115 (150)
T 4ga2_A 84 AVECYRRSVELN----PTQKDLVLKIAELLCKNDVT 115 (150)
T ss_dssp HHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCh
Confidence 999999999854 64 66788888888888875
No 111
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.48 E-value=0.0038 Score=51.04 Aligned_cols=98 Identities=14% Similarity=0.010 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 210 (258)
+...+..+-..+.+.|++++|...|++..+.. | -+...|..+-.+|.+.|++++|.+.+++..+.. +-+...|..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--P-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34456666667777777777777777776653 1 145567777777777777777777777776542 2345666677
Q ss_pred HHHHHHcCCHHHHHHHHHHhHh
Q 047392 211 INALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 211 i~~~~~~g~~~~a~~~f~~M~~ 232 (258)
-.++.+.|++++|...|++...
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777776654
No 112
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.44 E-value=0.0014 Score=49.82 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcC--C-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCC--
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRG--N-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ----FRCRP-- 202 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--~-~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~----~g~~p-- 202 (258)
..++..+-..+...|++++|.+.+++..+.. . .+.....+++.+-..|...|++++|.+.+++..+ .|-.+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 4455555566666666666666666554410 0 0111333455555666666666666666665443 12111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 203 DVYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 203 ~~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
....++.+-..+...|++++|...+++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 12335555555666666666666666554
No 113
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.43 E-value=0.0015 Score=53.62 Aligned_cols=145 Identities=10% Similarity=-0.082 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHh---hCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CCCcCHHHHHHHHHHHHhc-C
Q 047392 112 INKATEFYHWVER---FFHFFHN-EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN---GELVTTSTVTCLIKVLGEE-G 183 (258)
Q Consensus 112 ~~~a~~~f~~m~~---~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~t~~~li~~~~~~-g 183 (258)
+++|++.|.+..+ ..|-.++ ..+|+.+-..|.+.|++++|...|++-.+-.. .+..-..+|+.+-..|... |
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg 132 (292)
T 1qqe_A 53 LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH 132 (292)
T ss_dssp THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc
Confidence 4577777765532 1122222 56889999999999999999999887655310 0000134788899999996 9
Q ss_pred ChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCH-----HHHHHHHHHHHH
Q 047392 184 LVNEALATFYRMKQF----RCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV-----YTYTILISSYCK 253 (258)
Q Consensus 184 ~~~~a~~l~~~M~~~----g~~p~-~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~-----~ty~~li~~~~~ 253 (258)
++++|++.|++..+. |-.+. ..+|+.+-..+.+.|++++|...|++....... .++. ..|..+..++..
T Consensus 133 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~lg~~~~~ 211 (292)
T 1qqe_A 133 DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG-NRLSQWSLKDYFLKKGLCQLA 211 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS-CTTTGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-CCcccHHHHHHHHHHHHHHHH
Confidence 999999999997652 11111 357888999999999999999999999875421 0111 145666666666
Q ss_pred cCCC
Q 047392 254 YGMQ 257 (258)
Q Consensus 254 ~g~~ 257 (258)
.|+.
T Consensus 212 ~g~~ 215 (292)
T 1qqe_A 212 ATDA 215 (292)
T ss_dssp TTCH
T ss_pred cCCH
Confidence 6653
No 114
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.40 E-value=0.0071 Score=46.22 Aligned_cols=113 Identities=15% Similarity=-0.007 Sum_probs=76.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc---C-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV---T-----------TSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~-----------~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g 199 (258)
.+..+-..+.+.|++++|.+.|++..+..-. .+ . ...|..+-.+|.+.|++++|+..+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4555666677788888888888887764211 11 0 2567777788888888888888888877642
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHH
Q 047392 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYC 252 (258)
Q Consensus 200 ~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~ 252 (258)
+.+...|..+-.++...|++++|.+.|++..... |+ ...+..+-..+.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN----PNNLDIRNSYELCVN 167 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHH
Confidence 3456677777778888888888888888877643 43 344444444443
No 115
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.39 E-value=0.0015 Score=60.55 Aligned_cols=116 Identities=9% Similarity=-0.110 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHh-----h-CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCCh
Q 047392 112 INKATEFYHWVER-----F-FHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLV 185 (258)
Q Consensus 112 ~~~a~~~f~~m~~-----~-~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~ 185 (258)
.++|++.|++..+ . ..-+.+...|..+-..+.+.|++++|.+.|++..+..- -+...|..+-.+|...|++
T Consensus 407 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 407 PVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG---WRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp HHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc---chHHHHHHHHHHHHHcCCH
Confidence 4556666655540 0 01122334455555556666666666666666555421 1334455555555666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 186 ~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
++|.+.|++..+.. +-+...|..+-..+.+.|++++ .+.|++..+
T Consensus 484 ~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~ 528 (681)
T 2pzi_A 484 DSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS 528 (681)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH
Confidence 66666666554421 1123344444444444444444 444444443
No 116
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.30 E-value=0.0035 Score=53.23 Aligned_cols=147 Identities=9% Similarity=0.008 Sum_probs=99.2
Q ss_pred cCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC----CCcCHHHHHHHHHHHHh
Q 047392 110 LGINKATEFYHWVERFFHFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG----ELVTTSTVTCLIKVLGE 181 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~t~~~li~~~~~ 181 (258)
...++|++.|++......-.++ ..+|..+-..+...|+.++|.+.+++-.+.-.. ......+++.+-..|..
T Consensus 117 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 196 (383)
T 3ulq_A 117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLD 196 (383)
T ss_dssp TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH
Confidence 3366889998887643222233 356777888888999999998888876554111 01123467888888999
Q ss_pred cCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC----CCCCCCCHHHHHHHHHHHH
Q 047392 182 EGLVNEALATFYRMKQF----RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELP----GFRCPPDVYTYTILISSYC 252 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~----~~~~~pd~~ty~~li~~~~ 252 (258)
.|++++|.+.|++..+. +-.+ ...+|+.+=..|...|+.++|.+.|++.... +.. .-...++..+-..|.
T Consensus 197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~ 275 (383)
T 3ulq_A 197 LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL-PSLPQAYFLITQIHY 275 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHH
Confidence 99999999988887642 2111 1246777888888899999999999888761 211 133556777777777
Q ss_pred HcCCC
Q 047392 253 KYGMQ 257 (258)
Q Consensus 253 ~~g~~ 257 (258)
+.|+.
T Consensus 276 ~~g~~ 280 (383)
T 3ulq_A 276 KLGKI 280 (383)
T ss_dssp HTTCH
T ss_pred HCCCH
Confidence 77764
No 117
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.30 E-value=0.0012 Score=49.53 Aligned_cols=107 Identities=11% Similarity=0.098 Sum_probs=81.5
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCH-
Q 047392 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA-LCRVGNF- 220 (258)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~-~~~~g~~- 220 (258)
...|++++|.+.+++..+.. + -+...|..+-.+|...|++++|.+.|++..+.. +.+...|..+-.. +.+.|+.
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-P--QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-C--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-C--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 45788889999998887764 1 256689999999999999999999999987643 2366677777777 7789998
Q ss_pred -HHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCC
Q 047392 221 -NKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 221 -~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~ 257 (258)
++|...|++..... |+ ...|..+-..|.+.|+.
T Consensus 97 ~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~ 131 (177)
T 2e2e_A 97 TAQTRAMIDKALALD----SNEITALMLLASDAFMQANY 131 (177)
T ss_dssp CHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcccH
Confidence 99999999998854 54 66777777788887764
No 118
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.27 E-value=0.0038 Score=52.95 Aligned_cols=142 Identities=11% Similarity=-0.011 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC---C-CCcCHHHHHHHHHHHHhcC
Q 047392 112 INKATEFYHWVERFFHFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN---G-ELVTTSTVTCLIKVLGEEG 183 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~---~-~~~~~~t~~~li~~~~~~g 183 (258)
.++|++.|++......-.++ ..+|..+-..+...|+.++|...+++..+... . ......+++.+-.+|...|
T Consensus 117 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~ 196 (378)
T 3q15_A 117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFK 196 (378)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhC
Confidence 45677777666532211222 33555566666677777777666666543210 0 0012335666666677777
Q ss_pred ChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHh-----CCCCCCCCHHHHHHHHHHHHH
Q 047392 184 LVNEALATFYRMKQF----RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 184 ~~~~a~~l~~~M~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~-----~~~~~~pd~~ty~~li~~~~~ 253 (258)
++++|.+.|++..+. |-.+ ...+++.+=..|...|+.++|.+.|++... ... ....++..+-..|.+
T Consensus 197 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~la~~~~~ 273 (378)
T 3q15_A 197 HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD---LLPKVLFGLSWTLCK 273 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG---GHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh---hHHHHHHHHHHHHHH
Confidence 777777776665431 1111 123455556666667777777777766655 321 123455555555665
Q ss_pred cCC
Q 047392 254 YGM 256 (258)
Q Consensus 254 ~g~ 256 (258)
.|+
T Consensus 274 ~g~ 276 (378)
T 3q15_A 274 AGQ 276 (378)
T ss_dssp TTC
T ss_pred CCC
Confidence 554
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.26 E-value=0.017 Score=47.08 Aligned_cols=121 Identities=8% Similarity=-0.053 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCCCcCHHHHHHHHHHHHhc
Q 047392 111 GINKATEFYHWVERFFHFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRR----GNGELVTTSTVTCLIKVLGEE 182 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~t~~~li~~~~~~ 182 (258)
..++|++.|++......-.++ ..+|+.+-..|...|++++|.+.|++..+. .........+|..+-..|.+.
T Consensus 130 ~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~ 209 (293)
T 3u3w_A 130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 367999999998753222233 346899999999999999999999998742 011111234788999999999
Q ss_pred CChHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHHcCC-HHHHHHHHHHhH
Q 047392 183 GLVNEALATFYRMKQ----FRCRPD-VYAYNVVINALCRVGN-FNKARFLLEQME 231 (258)
Q Consensus 183 g~~~~a~~l~~~M~~----~g~~p~-~~ty~~li~~~~~~g~-~~~a~~~f~~M~ 231 (258)
|++++|.+.+++..+ .+..+. ..+|..+=..+.+.|+ .++|.+.|++..
T Consensus 210 ~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999998754 333333 5778888888899994 699998888764
No 120
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.25 E-value=0.0029 Score=44.06 Aligned_cols=98 Identities=7% Similarity=0.009 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC----HHHHHHHHHHHHhcCChH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT----TSTVTCLIKVLGEEGLVN 186 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~t~~~li~~~~~~g~~~ 186 (258)
.+++|.+.|++.... .+.+...|..+...+.+.|++++|...+++..+.......+ ..+|..+-.+|.+.|+++
T Consensus 19 ~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 96 (131)
T 1elr_A 19 DFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK 96 (131)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHH
Confidence 367999999998754 23467788889999999999999999999987763211112 668899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047392 187 EALATFYRMKQFRCRPDVYAYNVVIN 212 (258)
Q Consensus 187 ~a~~l~~~M~~~g~~p~~~ty~~li~ 212 (258)
+|.+.|++..+.. |+...+..+-.
T Consensus 97 ~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 97 DAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 9999999998753 56655544443
No 121
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.25 E-value=0.01 Score=47.39 Aligned_cols=120 Identities=12% Similarity=0.030 Sum_probs=88.8
Q ss_pred cCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHc--------cCChHHHHHHHHHHHHcCCCCCcCHHHH--------
Q 047392 110 LGINKATEFYHWVERFFHFFHN-EVTCKEMGIVFAR--------GNNVKGLWDFLKEMSRRGNGELVTTSTV-------- 172 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~-~~~y~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~~~~~t~-------- 172 (258)
...++|++.|++......-.|. ...+..+-.++.+ .|++++|...|++..+.... +....
T Consensus 66 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~a~~~~~~ 142 (261)
T 3qky_A 66 KEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN---HELVDDATQKIRE 142 (261)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT---CTTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC---chhHHHHHHHHHH
Confidence 3467999999998754321122 3456667777777 99999999999999887421 11123
Q ss_pred ---------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHH
Q 047392 173 ---------TCLIKVLGEEGLVNEALATFYRMKQFRCRPD----VYAYNVVINALCRV----------GNFNKARFLLEQ 229 (258)
Q Consensus 173 ---------~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~----~~ty~~li~~~~~~----------g~~~~a~~~f~~ 229 (258)
-.+-..|.+.|++++|...|++..+.. |+ ...+..+-.+|.+. |++++|...|++
T Consensus 143 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~ 220 (261)
T 3qky_A 143 LRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER 220 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence 445778999999999999999998642 43 45677777777766 899999999999
Q ss_pred hHhCC
Q 047392 230 MELPG 234 (258)
Q Consensus 230 M~~~~ 234 (258)
.....
T Consensus 221 ~~~~~ 225 (261)
T 3qky_A 221 LLQIF 225 (261)
T ss_dssp HHHHC
T ss_pred HHHHC
Confidence 98754
No 122
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.25 E-value=0.0063 Score=46.53 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHhhCCCCCC--------------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHN--------------EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLI 176 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~--------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li 176 (258)
.+++|++.|++......-.|+ ...|..+-.++.+.|++++|...+++..+.. + .+...|..+-
T Consensus 53 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p--~~~~~~~~lg 129 (198)
T 2fbn_A 53 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K--NNVKALYKLG 129 (198)
T ss_dssp CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T--TCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c--ccHHHHHHHH
Confidence 366999999988743211221 2678888889999999999999999998863 2 2567899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHhHhCC
Q 047392 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR-FLLEQMELPG 234 (258)
Q Consensus 177 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~-~~f~~M~~~~ 234 (258)
.+|...|++++|.+.|++..+.. +-+...+..+-..+.+.++.+++. ..|..|...+
T Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 130 VANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999987642 235677777878888888877776 6677776544
No 123
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.22 E-value=0.0022 Score=59.45 Aligned_cols=136 Identities=10% Similarity=-0.108 Sum_probs=106.3
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
....++|++.|++..+.. +-+...|..+-..+.+.|++++|.+.|++..+..-. +...|..+-.+|.+.|++++
T Consensus 446 ~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~~~~~lg~~~~~~g~~~~- 519 (681)
T 2pzi_A 446 LGDVAKATRKLDDLAERV--GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG---ELAPKLALAATAELAGNTDE- 519 (681)
T ss_dssp HTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CSHHHHHHHHHHHHHTCCCT-
T ss_pred cCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCChHH-
Confidence 345889999999887431 245678888889999999999999999998886421 44578999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCH-HHHHHHHHHHHHcC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV-YTYTILISSYCKYG 255 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~-~ty~~li~~~~~~g 255 (258)
.+.|++..+.. +-+...|..+-..+.+.|+.++|.+.|++..+.. |+. ..|..+..++...|
T Consensus 520 ~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 520 HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTS----RHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS----TTHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC----cccHHHHHHHHHHHHccC
Confidence 99999987643 3366788999999999999999999999998744 764 45655555554433
No 124
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.21 E-value=0.01 Score=46.21 Aligned_cols=131 Identities=12% Similarity=-0.027 Sum_probs=95.6
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC----ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh---
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGN----NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE--- 181 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g----~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~--- 181 (258)
..+.++|++.|++..+. | +...+..|-..|.. + +.++|.+.|++-.+.| +...+..|-..|..
T Consensus 31 ~~~~~~A~~~~~~a~~~-g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g-----~~~a~~~Lg~~y~~g~g 100 (212)
T 3rjv_A 31 SGDYQKAEYWAQKAAAQ-G---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG-----SKSGEIVLARVLVNRQA 100 (212)
T ss_dssp HTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHTCGGG
T ss_pred CCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCC
Confidence 45588888888887743 2 55666666666666 6 7888888888887776 45567777777776
Q ss_pred -cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 182 -EGLVNEALATFYRMKQFRCR-PDVYAYNVVINALCR----VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 182 -~g~~~~a~~l~~~M~~~g~~-p~~~ty~~li~~~~~----~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
.++.++|.+.|++..+.|.. -+...+..|=..|.. .++.++|.++|++-...+ .+...+..|=..|.+
T Consensus 101 ~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~----~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 101 GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS----RTGYAEYWAGMMFQQ 174 (212)
T ss_dssp SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS----CTTHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHc
Confidence 78888898888888876521 126677777777777 778888999998888753 787777666666654
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.21 E-value=0.0044 Score=50.71 Aligned_cols=121 Identities=8% Similarity=-0.065 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHhhCC--CCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHH---cC-CCCCcCHHHHHHHHHHHHhc
Q 047392 111 GINKATEFYHWVERFFH--FFHN--EVTCKEMGIVFARGNNVKGLWDFLKEMSR---RG-NGELVTTSTVTCLIKVLGEE 182 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~--~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~---~g-~~~~~~~~t~~~li~~~~~~ 182 (258)
..++|++.|++...... ..+. ..+|+.+-..|...|++++|.+.|++..+ .. ..+.....+|+.+-..|.+.
T Consensus 130 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~ 209 (293)
T 2qfc_A 130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH
Confidence 47799999988763211 1122 45888999999999999999999998763 21 11111225899999999999
Q ss_pred CChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHH-HHHHHHhH
Q 047392 183 GLVNEALATFYRMKQF----RCRPD-VYAYNVVINALCRVGNFNKA-RFLLEQME 231 (258)
Q Consensus 183 g~~~~a~~l~~~M~~~----g~~p~-~~ty~~li~~~~~~g~~~~a-~~~f~~M~ 231 (258)
|++++|.+.+++..+. +.... ..+|..+-..|.+.|+.++| ...|++-.
T Consensus 210 ~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 9999999999987642 22222 57788888899999999999 77777653
No 126
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.20 E-value=0.045 Score=42.38 Aligned_cols=117 Identities=14% Similarity=0.034 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh----c
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFAR----GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE----E 182 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~----~ 182 (258)
+.++|++.|++..+. -+...+..|-..|.. .++.++|.+.|++-.+.|... -+...+..|=..|.. .
T Consensus 68 ~~~~A~~~~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~-~~~~a~~~Lg~~y~~g~g~~ 142 (212)
T 3rjv_A 68 DYPQARQLAEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD-AAVDAQMLLGLIYASGVHGP 142 (212)
T ss_dssp CHHHHHHHHHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH-HHHHHHHHHHHHHHHTSSSS
T ss_pred CHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc-chHHHHHHHHHHHHcCCCCC
Confidence 689999999998743 356677777777776 789999999999988776210 015578888888888 8
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHhHhCC
Q 047392 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV-G-----NFNKARFLLEQMELPG 234 (258)
Q Consensus 183 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~-g-----~~~~a~~~f~~M~~~~ 234 (258)
++.++|.+.|++-.+. ..+...+..|=..|.+. | +.++|.++|++-.+.|
T Consensus 143 ~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 143 EDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp CCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8999999999998876 23555666666666664 3 8999999999998876
No 127
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.20 E-value=0.0053 Score=54.35 Aligned_cols=121 Identities=12% Similarity=-0.026 Sum_probs=89.6
Q ss_pred CCCccccccCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh
Q 047392 102 YRNPQKVTLGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE 181 (258)
Q Consensus 102 ~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~ 181 (258)
.+..+......++|++.|++..+. -+-+...|..+-.++.+.|++++|.+.+++..+.. | -+...|..+-.+|.+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p-~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--K-KYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--T-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHH
Confidence 344444455688999999998753 22357889999999999999999999999998874 2 256789999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 047392 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINA--LCRVGNFNKARFLLE 228 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~--~~~~g~~~~a~~~f~ 228 (258)
.|++++|.+.|++..+.. +-+...+..+-.+ +.+.|++++|.++++
T Consensus 87 ~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999987642 1133344444444 888899999999998
No 128
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.18 E-value=0.02 Score=38.73 Aligned_cols=83 Identities=13% Similarity=0.019 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|.+.|++.... .+.+...+..+...+.+.|++++|.+.+++..+.. | .+...+..+..+|...|++++|.+
T Consensus 19 ~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~a~~~~~~~~~~~A~~ 93 (118)
T 1elw_A 19 NIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--P-DWGKGYSRKAAALEFLNRFEEAKR 93 (118)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--c-ccHHHHHHHHHHHHHHhhHHHHHH
Confidence 367999999998753 23467788888899999999999999999998874 2 256689999999999999999999
Q ss_pred HHHHHHhC
Q 047392 191 TFYRMKQF 198 (258)
Q Consensus 191 l~~~M~~~ 198 (258)
.|++..+.
T Consensus 94 ~~~~~~~~ 101 (118)
T 1elw_A 94 TYEEGLKH 101 (118)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHc
Confidence 99998864
No 129
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.18 E-value=0.0022 Score=43.39 Aligned_cols=82 Identities=10% Similarity=-0.015 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC---CHHHHHHH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP---DVYTYTIL 247 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p---d~~ty~~l 247 (258)
.|..+-..+...|++++|...|++..+.. +.+...|..+-..+.+.|++++|.+.|++..... | +...|..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~l 82 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI----EDEYNKDVWAAK 82 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----cccchHHHHHHH
Confidence 57788889999999999999999987643 3467788889999999999999999999999854 5 47788888
Q ss_pred HHHHHHc-CCC
Q 047392 248 ISSYCKY-GMQ 257 (258)
Q Consensus 248 i~~~~~~-g~~ 257 (258)
-..|.+. |+.
T Consensus 83 ~~~~~~~~~~~ 93 (112)
T 2kck_A 83 ADALRYIEGKE 93 (112)
T ss_dssp HHHHTTCSSCS
T ss_pred HHHHHHHhCCH
Confidence 8888888 765
No 130
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.0078 Score=40.75 Aligned_cols=64 Identities=9% Similarity=-0.044 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
+...|..+-..+.+.|++++|.+.|++..+.. | .+...|..+-.+|.+.|++++|.+.|++..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--P-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34455556666666677777777776666553 1 1445566666666677777777777766655
No 131
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.16 E-value=0.00094 Score=54.56 Aligned_cols=146 Identities=10% Similarity=-0.039 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHhh---CCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CCCcCHHHHHHHHHHHHhcCC
Q 047392 112 INKATEFYHWVERF---FHFF-HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN---GELVTTSTVTCLIKVLGEEGL 184 (258)
Q Consensus 112 ~~~a~~~f~~m~~~---~~~~-p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~t~~~li~~~~~~g~ 184 (258)
.++|.+.|++.... .+-. ....++..+...+...|++++|.+.+++..+... .+.....++..+...|...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 56777777664321 1111 1234677788889999999999999988765411 111123478889999999999
Q ss_pred hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC---CCCCHHHHHHHHHHHHHcCC
Q 047392 185 VNEALATFYRMKQF----RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFR---CPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 185 ~~~a~~l~~~M~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~---~~pd~~ty~~li~~~~~~g~ 256 (258)
+++|.+.+++..+. +-.+ ...++..+-..+.+.|++++|...|++.....-. ......++..+-..|.+.|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999987642 1111 1567788888999999999999999988653100 00113467777788888776
Q ss_pred C
Q 047392 257 Q 257 (258)
Q Consensus 257 ~ 257 (258)
.
T Consensus 319 ~ 319 (338)
T 3ro2_A 319 H 319 (338)
T ss_dssp H
T ss_pred h
Confidence 4
No 132
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.15 E-value=0.002 Score=54.42 Aligned_cols=145 Identities=11% Similarity=-0.029 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhh---CCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CCCcCHHHHHHHHHHHHhcCC
Q 047392 112 INKATEFYHWVERF---FHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN---GELVTTSTVTCLIKVLGEEGL 184 (258)
Q Consensus 112 ~~~a~~~f~~m~~~---~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~t~~~li~~~~~~g~ 184 (258)
.++|.+.|++.... .+-.| ...+|..+-..+...|++++|.+.+++..+... .+.....+|..+-..|...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 56777777664321 11111 234677888889999999999999988765411 111123478889999999999
Q ss_pred hHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC----HHHHHHHHHHHHHcC
Q 047392 185 VNEALATFYRMKQF----RCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD----VYTYTILISSYCKYG 255 (258)
Q Consensus 185 ~~~a~~l~~~M~~~----g~~p~-~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd----~~ty~~li~~~~~~g 255 (258)
+++|.+.+++..+. +-.+. ..++..+-..+.+.|++++|.+.|++.....-. ..+ ..+|..+-..|.+.|
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~la~~~~~~g 321 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-LNDRIGEGRACWSLGNAYTALG 321 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHcC
Confidence 99999999987642 21111 567888888999999999999999988653210 022 456777777777777
Q ss_pred CC
Q 047392 256 MQ 257 (258)
Q Consensus 256 ~~ 257 (258)
+.
T Consensus 322 ~~ 323 (406)
T 3sf4_A 322 NH 323 (406)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 133
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.14 E-value=0.0054 Score=54.56 Aligned_cols=122 Identities=7% Similarity=-0.048 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhhC--CCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc-----CCCCCcCHHHHHHHHHHHH
Q 047392 112 INKATEFYHWVERFF--HFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRR-----GNGELVTTSTVTCLIKVLG 180 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~--~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~~~~~t~~~li~~~~ 180 (258)
.++|.+++++..... -+-|+ ..+++.|...|...|++++|..++++..+- |-.-.-...+++.|-..|.
T Consensus 325 ~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~ 404 (490)
T 3n71_A 325 YHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNW 404 (490)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 567888877654321 12232 557999999999999999999998886543 2221123457999999999
Q ss_pred hcCChHHHHHHHHHHHh-----CC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 181 EEGLVNEALATFYRMKQ-----FR--CRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~-----~g--~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
..|++++|+.++++..+ .| .+-...+.+.+-.++...|..++|+.+|.++++.
T Consensus 405 ~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 405 HAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998653 33 2222344566667777889999999999999763
No 134
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.11 E-value=0.0089 Score=50.65 Aligned_cols=121 Identities=8% Similarity=0.012 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC---CCcCHHHHHHHHHHHHhcC
Q 047392 112 INKATEFYHWVERFFHFFH-----NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG---ELVTTSTVTCLIKVLGEEG 183 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p-----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~---~~~~~~t~~~li~~~~~~g 183 (258)
.++|++.|++..+-..-.+ ...+++.+-..|...|++++|.+.|++..+.... +.....+++.+-.+|...|
T Consensus 159 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 159 TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence 4566766666543211112 2457888889999999999999999887654110 1112347888999999999
Q ss_pred ChHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 184 LVNEALATFYRMKQ----FRC-RPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 184 ~~~~a~~l~~~M~~----~g~-~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
++++|.+.|++..+ .+. +....++..+-..+.+.|+.++|.+.|++...
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999876 233 44567788899999999999999999998765
No 135
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.0008 Score=45.95 Aligned_cols=85 Identities=15% Similarity=0.054 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-------
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD------- 240 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd------- 240 (258)
+...|..+-..+.+.|++++|.+.|++..+.. +.+...|..+-.++.+.|++++|.+.|++..... |+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT----STAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC----SSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCccHHHHH
Confidence 44568888899999999999999999987642 3467888888899999999999999999999754 66
Q ss_pred HHHHHHHHHHHHHcCCC
Q 047392 241 VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 241 ~~ty~~li~~~~~~g~~ 257 (258)
...+..+-.++...|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSV 94 (111)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 55677666666666553
No 136
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.11 E-value=0.0055 Score=44.08 Aligned_cols=121 Identities=12% Similarity=0.036 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcC---CCCCcCHHHHHHHHHHHHhcCC
Q 047392 112 INKATEFYHWVERFFHFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRRG---NGELVTTSTVTCLIKVLGEEGL 184 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~t~~~li~~~~~~g~ 184 (258)
+++|++.|++..+...-.++ ..++..+-..+...|++++|.+.+++..+.. -.+......+..+-..|...|+
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 104 (164)
T 3ro3_A 25 FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 104 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhh
Confidence 45777777665432110112 2467778888999999999999998866541 1111124568888889999999
Q ss_pred hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 185 VNEALATFYRMKQF----RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 185 ~~~a~~l~~~M~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
+++|.+.+++..+. +..+ ...++..+-..+...|+.++|.+.+++...
T Consensus 105 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 105 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999987642 2111 235677788888999999999999988764
No 137
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.11 E-value=0.0061 Score=53.97 Aligned_cols=91 Identities=10% Similarity=-0.011 Sum_probs=77.8
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047392 140 IVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (258)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 219 (258)
..+.+.|++++|.+.|++..+.. | -+...|..+-.+|.+.|++++|++.+++..+.. +-+...|..+-.+|.+.|+
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~--p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN--P-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--C-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 34567899999999999988863 2 257789999999999999999999999998753 3467888999999999999
Q ss_pred HHHHHHHHHHhHhCC
Q 047392 220 FNKARFLLEQMELPG 234 (258)
Q Consensus 220 ~~~a~~~f~~M~~~~ 234 (258)
+++|.+.|++..+..
T Consensus 90 ~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 90 FRAALRDYETVVKVK 104 (477)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998754
No 138
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.09 E-value=0.0043 Score=52.37 Aligned_cols=147 Identities=12% Similarity=0.009 Sum_probs=101.6
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CCCcCHHHHHHHHHHHHh
Q 047392 109 TLGINKATEFYHWVERFFHFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN---GELVTTSTVTCLIKVLGE 181 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~t~~~li~~~~~ 181 (258)
....++|.+.|++......-.++ ..+|..+-..+...|++++|...+++..+... .+.....++..+-..|.+
T Consensus 200 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 279 (406)
T 3sf4_A 200 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 279 (406)
T ss_dssp HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence 34467888888876532111122 33788888999999999999999988765411 011115578899999999
Q ss_pred cCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC----CCCCCCCHHHHHHHHHHHH
Q 047392 182 EGLVNEALATFYRMKQF----RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELP----GFRCPPDVYTYTILISSYC 252 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~----~~~~~pd~~ty~~li~~~~ 252 (258)
.|++++|.+.|++..+. +-.+ ...+|..+-..|.+.|++++|.+.|++.... +.. .....++..+-..+.
T Consensus 280 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~ 358 (406)
T 3sf4_A 280 LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDK-SGELTARLNLSDLQM 358 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-cchhHHHHHHHHHHH
Confidence 99999999999997652 2111 1567888888999999999999999987542 211 022345666666676
Q ss_pred HcCC
Q 047392 253 KYGM 256 (258)
Q Consensus 253 ~~g~ 256 (258)
..|+
T Consensus 359 ~~g~ 362 (406)
T 3sf4_A 359 VLGL 362 (406)
T ss_dssp HHHT
T ss_pred HhhH
Confidence 6664
No 139
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.09 E-value=0.012 Score=41.72 Aligned_cols=88 Identities=10% Similarity=-0.063 Sum_probs=72.6
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
...++|++.|++..+. -+.+...|..+-.++.+.|++++|.+.|++..+.. | -+...|..+-.+|...|++++|.
T Consensus 27 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p-~~~~a~~~lg~~~~~~~~~~~A~ 101 (126)
T 4gco_A 27 GDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--S-KFIKGYIRKAACLVAMREWSKAQ 101 (126)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--h-hhhHHHHHHHHHHHHCCCHHHHH
Confidence 4467999999997643 23467889999999999999999999999988864 2 25668999999999999999999
Q ss_pred HHHHHHHhCCCCCCH
Q 047392 190 ATFYRMKQFRCRPDV 204 (258)
Q Consensus 190 ~l~~~M~~~g~~p~~ 204 (258)
+.|++..+. .|+-
T Consensus 102 ~~~~~al~l--~P~~ 114 (126)
T 4gco_A 102 RAYEDALQV--DPSN 114 (126)
T ss_dssp HHHHHHHHH--CTTC
T ss_pred HHHHHHHHH--CcCC
Confidence 999998874 3543
No 140
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.07 E-value=0.003 Score=51.44 Aligned_cols=125 Identities=11% Similarity=-0.017 Sum_probs=90.7
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CCCcCHHHHHHHHHHHHh
Q 047392 109 TLGINKATEFYHWVERFFHFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN---GELVTTSTVTCLIKVLGE 181 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~t~~~li~~~~~ 181 (258)
....++|.+.|++..+...-.++ ..++..+...+.+.|++++|.+.+++..+... .+.....++..+-..|..
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 34467888888776432110122 33778888899999999999999988765411 011125578889999999
Q ss_pred cCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 182 EGLVNEALATFYRMKQF----RC-RPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~----g~-~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
.|++++|.+.+++..+. +- .....++..+-..+.+.|++++|.+.|++....
T Consensus 276 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 276 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999997652 11 112457788889999999999999999998864
No 141
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.02 E-value=0.0016 Score=55.45 Aligned_cols=63 Identities=14% Similarity=0.046 Sum_probs=30.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcC--C-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRG--N-GELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g--~-~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
.|..+-..+...|++++|.+.+++..+.. . .......++..+-..|...|++++|.+.|++..
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 153 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL 153 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44455555555555555555555543320 0 001122345555555555555555555555543
No 142
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.02 E-value=0.014 Score=49.75 Aligned_cols=115 Identities=13% Similarity=0.011 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcC--------------CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRG--------------NGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF 198 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--------------~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~ 198 (258)
..|..+-..+.+.|++++|.+.|++..+.- .. ..+...|+.+-.+|.+.|++++|++.+++..+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 346777788999999999999999887610 00 124567899999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHH
Q 047392 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCK 253 (258)
Q Consensus 199 g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~ 253 (258)
. +-+...|..+-.+|.+.|++++|.+.|++..+.. |+ ...+..+-..+.+
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~----P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA----PEDKAIQAELLKVKQK 353 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHH
Confidence 3 3367788888899999999999999999998753 54 4455555444443
No 143
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.99 E-value=0.0068 Score=51.41 Aligned_cols=122 Identities=8% Similarity=-0.038 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhhCC----CCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcC--C-CCCcCHHHHHHHHHHHHhcC
Q 047392 112 INKATEFYHWVERFFH----FFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG--N-GELVTTSTVTCLIKVLGEEG 183 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~----~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--~-~~~~~~~t~~~li~~~~~~g 183 (258)
.+.|++.|++..+... ..+ ...+++.+-..|...|++++|.+.|++..+.. . .+.....+++.|-.+|...|
T Consensus 157 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 157 THVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 5567776666543211 111 25578888889999999999999998876531 1 11113447888889999999
Q ss_pred ChHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 184 LVNEALATFYRMKQ----FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 184 ~~~~a~~l~~~M~~----~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
++++|.+.|++..+ .+.+....++..+-..+.+.|+.++|...|++....
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999876 133334678888889999999999999999998763
No 144
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.97 E-value=0.017 Score=50.65 Aligned_cols=115 Identities=12% Similarity=-0.008 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT--------------TSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--------------~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
...|..+-..+.+.|++++|...|++..+.. |... ...|..+-.+|.+.|++++|+..|++..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3456777788888999999999998887652 2111 46788888899999999999999998876
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH-HHHHHHHHHHH
Q 047392 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY-TYTILISSYCK 253 (258)
Q Consensus 198 ~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~-ty~~li~~~~~ 253 (258)
.. +-+...|..+-.+|.+.|++++|...|++..... |+-. .|..+-..+.+
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~----P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN----PQNKAARLQISMCQKK 397 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------CHHHHHHHHHHH
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHH
Confidence 43 3367778888888889999999999999988743 5433 45544444443
No 145
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.033 Score=39.53 Aligned_cols=81 Identities=9% Similarity=-0.001 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 112 INKATEFYHWVERFFHFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
+++|++.|++..+ ..|+ ...|..+-..+.+.|++++|.+.+++..+.. | -+...|..+-.+|...|++++
T Consensus 44 ~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~a~~~~~~~~~~~ 117 (148)
T 2dba_A 44 YGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--G-GDVKALYRRSQALEKLGRLDQ 117 (148)
T ss_dssp HHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--S-CCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--c-cCHHHHHHHHHHHHHcCCHHH
Confidence 5699999999874 3466 6778888899999999999999999988763 2 256678899999999999999
Q ss_pred HHHHHHHHHhC
Q 047392 188 ALATFYRMKQF 198 (258)
Q Consensus 188 a~~l~~~M~~~ 198 (258)
|.+.|++..+.
T Consensus 118 A~~~~~~al~~ 128 (148)
T 2dba_A 118 AVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999998764
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.95 E-value=0.0066 Score=49.91 Aligned_cols=126 Identities=13% Similarity=-0.010 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC--HHHHHHHHHHHHhcCChHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT--TSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~t~~~li~~~~~~g~~~~a~ 189 (258)
.++|.++|+.+... .|+....-.+-..+.+.+++++|...|+..... +.+. ...+..+=.++...|++++|+
T Consensus 118 y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~a~~~LG~al~~LG~~~eAl 191 (282)
T 4f3v_A 118 YADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGAAGVAHGVAAANLALFTEAE 191 (282)
T ss_dssp HHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHHHHHHHHHHHHHCCCHHHHH
Confidence 67999999887632 255444444556788999999999999854332 2111 235666777899999999999
Q ss_pred HHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 190 ATFYRMKQFRCRPD--VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 190 ~l~~~M~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
+.|++.......|. .......-.++.+.|+.++|..+|+++.... |+...+..|
T Consensus 192 ~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~----P~~~~~~aL 247 (282)
T 4f3v_A 192 RRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH----PEPKVAAAL 247 (282)
T ss_dssp HHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----CCHHHHHHH
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcHHHHHHH
Confidence 99999985443354 2345566677889999999999999999855 884444444
No 147
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.92 E-value=0.0099 Score=40.97 Aligned_cols=79 Identities=14% Similarity=-0.019 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 047392 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFY 193 (258)
Q Consensus 114 ~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~ 193 (258)
+|++.|++.... -+.+...|..+-..+.+.|++++|...|++..+.. | -+...|..+-.+|...|++++|...|+
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--P-TYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--C-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 355555555421 22345556666666666666666666666666543 1 134456666666666666666666666
Q ss_pred HHHh
Q 047392 194 RMKQ 197 (258)
Q Consensus 194 ~M~~ 197 (258)
+..+
T Consensus 78 ~al~ 81 (115)
T 2kat_A 78 SGLA 81 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 148
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.92 E-value=0.025 Score=39.36 Aligned_cols=90 Identities=13% Similarity=0.045 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChH
Q 047392 111 GINKATEFYHWVERFFHFFHNE----VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~ 186 (258)
.+++|.+.|++..... |+. ..+..+-.++.+.|++++|...|++..+...........+..+-.+|.+.|+++
T Consensus 17 ~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~ 93 (129)
T 2xev_A 17 KYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNT 93 (129)
T ss_dssp CHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHH
Confidence 4679999999987543 332 466778888999999999999999998864211001456888889999999999
Q ss_pred HHHHHHHHHHhCCCCCCHH
Q 047392 187 EALATFYRMKQFRCRPDVY 205 (258)
Q Consensus 187 ~a~~l~~~M~~~g~~p~~~ 205 (258)
+|.+.|++..+.. |+..
T Consensus 94 ~A~~~~~~~~~~~--p~~~ 110 (129)
T 2xev_A 94 EAQQTLQQVATQY--PGSD 110 (129)
T ss_dssp HHHHHHHHHHHHS--TTSH
T ss_pred HHHHHHHHHHHHC--CCCh
Confidence 9999999998743 5543
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.02 Score=39.95 Aligned_cols=82 Identities=7% Similarity=-0.111 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|++.|++..+. -+.+...|..+-.++.+.|++++|.+.+++..+.. | -+...|..+-.+|...|++++|.+
T Consensus 19 ~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p-~~~~~~~~lg~~~~~~~~~~~A~~ 93 (126)
T 3upv_A 19 DWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--P-NFVRAYIRKATAQIAVKEYASALE 93 (126)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--C-CcHHHHHHHHHHHHHHhCHHHHHH
Confidence 367999999988753 23467889999999999999999999999998874 2 256689999999999999999999
Q ss_pred HHHHHHh
Q 047392 191 TFYRMKQ 197 (258)
Q Consensus 191 l~~~M~~ 197 (258)
.|++..+
T Consensus 94 ~~~~al~ 100 (126)
T 3upv_A 94 TLDAART 100 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 150
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.90 E-value=0.019 Score=37.21 Aligned_cols=79 Identities=15% Similarity=0.117 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC-CHHHHHHHH
Q 047392 170 STVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP-DVYTYTILI 248 (258)
Q Consensus 170 ~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p-d~~ty~~li 248 (258)
..+..+-..|.+.|++++|.+.|++..+.. +-+...|..+-..+.+.|++++|...|++..... | +...+..+-
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----p~~~~~~~~l~ 84 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCHHHHHHHH
Confidence 345555566666666666666666665432 2245556666666666666777766666666532 3 334444444
Q ss_pred HHHHH
Q 047392 249 SSYCK 253 (258)
Q Consensus 249 ~~~~~ 253 (258)
..+.+
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44433
No 151
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.89 E-value=0.0084 Score=50.94 Aligned_cols=100 Identities=13% Similarity=0.070 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CC
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN---GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF----RCR-PD 203 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~----g~~-p~ 203 (258)
..+|..+-..+...|++++|.+.+++..+... .+.....++..+-..|...|++++|.+.|++..+. +-. ..
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 302 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE 302 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 45555556666666666666555555443210 00001224555555666666666666655554431 100 11
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 204 VYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 204 ~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
..+|..+-..+.+.|++++|.+.|++..
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555666666665555543
No 152
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.89 E-value=0.0026 Score=44.31 Aligned_cols=99 Identities=10% Similarity=-0.004 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 047392 112 INKATEFYHWVERFFH--FFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEAL 189 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~--~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~ 189 (258)
.++|++.|++..+. + -+-+...|..+-..+.+.|++++|.+.|++..+.... +...+..+-.+|.+.|++++|.
T Consensus 6 ~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 6 EAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN---HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHcCCHHHHH
Confidence 45778888887632 1 1223567888888999999999999999999887421 4668899999999999999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHH
Q 047392 190 ATFYRMKQF-RCRPDVYAYNVVINAL 214 (258)
Q Consensus 190 ~l~~~M~~~-g~~p~~~ty~~li~~~ 214 (258)
+.|++..+. .-.|+...|...|..|
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999998763 2223333344444333
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.87 E-value=0.016 Score=41.73 Aligned_cols=83 Identities=7% Similarity=-0.072 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|.+.|++.... -+.+...|..+-.++.+.|++++|...|++..+.. | -+...|..+-.+|...|++++|.+
T Consensus 33 ~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~lg~~~~~~g~~~~A~~ 107 (142)
T 2xcb_A 33 KWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--I-NEPRFPFHAAECHLQLGDLDGAES 107 (142)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--C-CCcHHHHHHHHHHHHcCCHHHHHH
Confidence 367999999998743 22467788888899999999999999999998874 2 144578889999999999999999
Q ss_pred HHHHHHhC
Q 047392 191 TFYRMKQF 198 (258)
Q Consensus 191 l~~~M~~~ 198 (258)
.|++..+.
T Consensus 108 ~~~~al~~ 115 (142)
T 2xcb_A 108 GFYSARAL 115 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998763
No 154
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.87 E-value=0.013 Score=44.21 Aligned_cols=121 Identities=10% Similarity=-0.021 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHh---hCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCCCcCHHHHHHHHHHHHhcC
Q 047392 112 INKATEFYHWVER---FFHFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRR----GNGELVTTSTVTCLIKVLGEEG 183 (258)
Q Consensus 112 ~~~a~~~f~~m~~---~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~t~~~li~~~~~~g 183 (258)
+++|.+.|++... ..+..| ...++..+-..+...|++++|.+.+++..+. +-.+......+..+-..+...|
T Consensus 42 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g 121 (203)
T 3gw4_A 42 FDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG 121 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC
Confidence 5577777776543 112212 2456777888899999999999999886554 2111123456888889999999
Q ss_pred ChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 184 LVNEALATFYRMKQ----FRCRP-DVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 184 ~~~~a~~l~~~M~~----~g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
++++|.+.+++..+ .+-.. -..++..+-..+.+.|++++|.+.|++...
T Consensus 122 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 122 DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999764 22111 123467777888899999999999988764
No 155
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.85 E-value=0.015 Score=42.95 Aligned_cols=87 Identities=14% Similarity=0.042 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|++.|++.... -+-+...|..+-.++.+.|++++|.+.|++..+.. |. +...|..+-.+|.+.|++++|.+.
T Consensus 52 ~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~-~~~~~~~lg~~~~~lg~~~eA~~~ 126 (151)
T 3gyz_A 52 IEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KN-DYTPVFHTGQCQLRLKAPLKAKEC 126 (151)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SS-CCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CC-CcHHHHHHHHHHHHcCCHHHHHHH
Confidence 67999999998753 23457788899999999999999999999998864 21 445789999999999999999999
Q ss_pred HHHHHhCCCCCCHH
Q 047392 192 FYRMKQFRCRPDVY 205 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ 205 (258)
|++..+.. ||..
T Consensus 127 ~~~al~l~--~~~~ 138 (151)
T 3gyz_A 127 FELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHHHC--CCHH
T ss_pred HHHHHHhC--CCHH
Confidence 99998743 6654
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.84 E-value=0.035 Score=40.80 Aligned_cols=83 Identities=7% Similarity=-0.075 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|++.|++..+.. +-+...|..+-.++.+.|++++|.+.|++..+.. | -+...|..+-.+|.+.|++++|.+
T Consensus 26 ~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~lg~~~~~~g~~~~A~~ 100 (164)
T 3sz7_A 26 EYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--P-KYSKAWSRLGLARFDMADYKGAKE 100 (164)
T ss_dssp CHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHccCHHHHHH
Confidence 3679999999987532 2467888999999999999999999999998874 2 256789999999999999999999
Q ss_pred HHHHHHhC
Q 047392 191 TFYRMKQF 198 (258)
Q Consensus 191 l~~~M~~~ 198 (258)
.|++..+.
T Consensus 101 ~~~~al~~ 108 (164)
T 3sz7_A 101 AYEKGIEA 108 (164)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998763
No 157
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.83 E-value=0.0079 Score=49.61 Aligned_cols=98 Identities=8% Similarity=0.042 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCC---CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCH-
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG---ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ----FRCRPDV- 204 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~---~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~----~g~~p~~- 204 (258)
.+|+.+-..|.+ |++++|.+.|++-.+.... +.....+++.+-..|.+.|++++|++.|++... .+..++.
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 345555555555 6666666666655443100 000123556666666666666666666666543 1211111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 205 YAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 205 ~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
.+|..+...+...|+.++|...|++..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 244444455555566666666666666
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.82 E-value=0.017 Score=40.68 Aligned_cols=86 Identities=10% Similarity=-0.163 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
+...|..+-..+.+.|++++|...|++..... +.+...|..+-..+.+.|++++|...|++.....- -+...|..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG---QSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---hhHHHHHHH
Confidence 56789999999999999999999999987643 34578889999999999999999999999988541 346678888
Q ss_pred HHHHHHcCCC
Q 047392 248 ISSYCKYGMQ 257 (258)
Q Consensus 248 i~~~~~~g~~ 257 (258)
-..|.+.|+.
T Consensus 84 ~~~~~~~~~~ 93 (137)
T 3q49_B 84 GQCQLEMESY 93 (137)
T ss_dssp HHHHHHTTCH
T ss_pred HHHHHHHhhH
Confidence 8888888764
No 159
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.81 E-value=0.016 Score=45.35 Aligned_cols=99 Identities=11% Similarity=-0.077 Sum_probs=71.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV----YAYNV 209 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~----~ty~~ 209 (258)
.+-.+...+.+.|++++|...|+++.+...........+..+..+|.+.|++++|...|++..+.. |+. ..+-.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHH
Confidence 344456678889999999999999988632111123467788899999999999999999988632 332 12322
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHhHhCC
Q 047392 210 VINALCR------------------VGNFNKARFLLEQMELPG 234 (258)
Q Consensus 210 li~~~~~------------------~g~~~~a~~~f~~M~~~~ 234 (258)
+-.++.+ .|+.++|...|++.....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 3333332 578999999999999854
No 160
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.79 E-value=0.026 Score=47.39 Aligned_cols=145 Identities=11% Similarity=0.027 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHcCC--C-CCcCHHHHHHHHHHHHhcCC
Q 047392 112 INKATEFYHWVERFFHFFHNE----VTCKEMGIVFARGNNVKGLWDFLKEMSRRGN--G-ELVTTSTVTCLIKVLGEEGL 184 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~--~-~~~~~~t~~~li~~~~~~g~ 184 (258)
.++|.+.+++...... ..+. .+++.+-..+...|++++|.+.+++..+..- . +.....+++.+-..+...|+
T Consensus 30 ~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~ 108 (373)
T 1hz4_A 30 PDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 108 (373)
T ss_dssp HHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCC
Confidence 5688888888764321 1222 2455666777788999999988887655311 0 10112345667778888999
Q ss_pred hHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC--CHHHHHHHHHHHHHcC
Q 047392 185 VNEALATFYRMKQ----FRCR--P-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP--DVYTYTILISSYCKYG 255 (258)
Q Consensus 185 ~~~a~~l~~~M~~----~g~~--p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p--d~~ty~~li~~~~~~g 255 (258)
+++|.+.+++..+ .|-. | ...++..+-..+...|++++|...+++.....-...+ ...+|..+-..+...|
T Consensus 109 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g 188 (373)
T 1hz4_A 109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARG 188 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcC
Confidence 9999999888754 2322 2 2345666777788899999999999887653211001 2345666666666666
Q ss_pred CC
Q 047392 256 MQ 257 (258)
Q Consensus 256 ~~ 257 (258)
+.
T Consensus 189 ~~ 190 (373)
T 1hz4_A 189 DL 190 (373)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 161
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.79 E-value=0.0055 Score=50.59 Aligned_cols=113 Identities=12% Similarity=0.023 Sum_probs=63.3
Q ss_pred cCHHHHHHHHHHHHhhC---CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCCcC-HHHHHHHHHHHHhc
Q 047392 110 LGINKATEFYHWVERFF---HFFH-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN--GELVT-TSTVTCLIKVLGEE 182 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~---~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~-~~t~~~li~~~~~~ 182 (258)
...++|++.|++..... +-.+ ...+|+.+-..+.+.|++++|.+.|++..+... ....+ ...+..+..++...
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~ 208 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR 208 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc
Confidence 34666777776654211 1100 134566677777778888888888877665310 00001 22556666667777
Q ss_pred CChHHHHHHHHHHHhCCCCCC---H---HHHHHHHHHHHHcCCHHHHHHH
Q 047392 183 GLVNEALATFYRMKQFRCRPD---V---YAYNVVINALCRVGNFNKARFL 226 (258)
Q Consensus 183 g~~~~a~~l~~~M~~~g~~p~---~---~ty~~li~~~~~~g~~~~a~~~ 226 (258)
|++++|.+.|++.. . .|+ . .....++.++ ..|+.+.+.++
T Consensus 209 g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 209 ADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp TCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 88888888887776 2 232 1 1234444444 56676665553
No 162
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.79 E-value=0.029 Score=47.06 Aligned_cols=147 Identities=11% Similarity=-0.034 Sum_probs=94.4
Q ss_pred cCHHHHHHHHHHHHhh---CCCC--C-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCcCHHHHHHHHHHHHh
Q 047392 110 LGINKATEFYHWVERF---FHFF--H-NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNG--ELVTTSTVTCLIKVLGE 181 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~---~~~~--p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~t~~~li~~~~~ 181 (258)
..+++|.+.|++.... .+.. | ....+..+-..+...|++++|.+.+++..+.... +.....+|..+-..+..
T Consensus 107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 186 (373)
T 1hz4_A 107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA 186 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Confidence 3356778777765432 1222 2 2345666778888999999999999987765321 11134578888889999
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHHcCCHHHHHHHHHHhHhCCCCC-CCCHHHHHHHHHHHHHc
Q 047392 182 EGLVNEALATFYRMKQFRCRPD-VYAYN-----VVINALCRVGNFNKARFLLEQMELPGFRC-PPDVYTYTILISSYCKY 254 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g~~p~-~~ty~-----~li~~~~~~g~~~~a~~~f~~M~~~~~~~-~pd~~ty~~li~~~~~~ 254 (258)
.|++++|...+++.....-.++ ...+. .....+...|+.++|..++++........ ......+..+...+...
T Consensus 187 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~ 266 (373)
T 1hz4_A 187 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 266 (373)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHc
Confidence 9999999999999865311111 11222 23344778999999999999987643210 01133456666667776
Q ss_pred CC
Q 047392 255 GM 256 (258)
Q Consensus 255 g~ 256 (258)
|+
T Consensus 267 g~ 268 (373)
T 1hz4_A 267 GE 268 (373)
T ss_dssp TC
T ss_pred CC
Confidence 65
No 163
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.79 E-value=0.012 Score=48.17 Aligned_cols=119 Identities=14% Similarity=0.051 Sum_probs=91.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 209 (258)
.+...+-.+-..+.+.|++++|.+.|++..+.. | -+...+..+-..|.+.|++++|.+.+++.... .|+......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~ 189 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS--N-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL 189 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--T-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--C-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence 344556667788889999999999999998874 2 15567899999999999999999999998764 366554333
Q ss_pred HHH-HHHHcCCHHHHHHHHHHhHhCCCCCCC-CHHHHHHHHHHHHHcCCC
Q 047392 210 VIN-ALCRVGNFNKARFLLEQMELPGFRCPP-DVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 210 li~-~~~~~g~~~~a~~~f~~M~~~~~~~~p-d~~ty~~li~~~~~~g~~ 257 (258)
... .+.+.++.++|...|++..... | +...+..+-..|.+.|+.
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~----P~~~~~~~~la~~l~~~g~~ 235 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAEN----PEDAALATQLALQLHQVGRN 235 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcC----CccHHHHHHHHHHHHHcccH
Confidence 333 3667888889999999998754 5 466788888888888864
No 164
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.78 E-value=0.014 Score=43.72 Aligned_cols=115 Identities=10% Similarity=0.029 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIV-FARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
+++|++.|+..... .|+...+..+... +.+.+...+|.+.+++..+.. | -+...+..+-.++...|++++|.+
T Consensus 56 ~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--P-~~~~~~~~la~~~~~~g~~~~A~~ 129 (176)
T 2r5s_A 56 FELAQELLATIPLE---YQDNSYKSLIAKLELHQQAAESPELKRLEQELAAN--P-DNFELACELAVQYNQVGRDEEALE 129 (176)
T ss_dssp HHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS--T-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcccHHHHHH
Confidence 56999999887543 2444333322111 223233445788888887763 2 156688999999999999999999
Q ss_pred HHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 191 TFYRMKQFRCR-PDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 191 l~~~M~~~g~~-p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
.|++..+..=. .+...+..+...+...|+.++|...|.+...
T Consensus 130 ~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 130 LLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99999875421 2366889999999999999999999987653
No 165
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.74 E-value=0.17 Score=44.36 Aligned_cols=110 Identities=10% Similarity=0.039 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh----cC
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFAR----GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE----EG 183 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~----~g 183 (258)
.++|++.|++..+. -+...+..|-..|.. .++.++|.+.|++-.+.| +...+..|-..|.. .+
T Consensus 95 ~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 95 YAQAVIWYKKAALK----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-----RDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCC
Confidence 44555555544422 133334444444444 445555555555554443 23334444444444 44
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhC
Q 047392 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELP 233 (258)
Q Consensus 184 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~----~g~~~~a~~~f~~M~~~ 233 (258)
+.++|.+.|++..+.| +...+..|-..|.+ .++.++|.++|++-.+.
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS 216 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC
Confidence 5555555555555443 44444444445544 55555555555555543
No 166
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.74 E-value=0.022 Score=41.57 Aligned_cols=81 Identities=7% Similarity=-0.069 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
.++|++.|++.... -+.+...|..+-.++.+.|++++|.+.|++..+.. | -+...|..+-.+|...|++++|.+.
T Consensus 37 ~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p-~~~~~~~~lg~~~~~~g~~~~A~~~ 111 (148)
T 2vgx_A 37 YEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--I-XEPRFPFHAAECLLQXGELAEAESG 111 (148)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T-TCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--C-CCchHHHHHHHHHHHcCCHHHHHHH
Confidence 66999999988743 23467788888899999999999999999998764 2 1445788899999999999999999
Q ss_pred HHHHHh
Q 047392 192 FYRMKQ 197 (258)
Q Consensus 192 ~~~M~~ 197 (258)
|++..+
T Consensus 112 ~~~al~ 117 (148)
T 2vgx_A 112 LFLAQE 117 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999876
No 167
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.70 E-value=0.096 Score=37.61 Aligned_cols=111 Identities=14% Similarity=0.089 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh----cCChH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE----EGLVN 186 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~----~g~~~ 186 (258)
+.++|++.|++..+. | .|+.. |-..|...+.+++|.+.|++-.+.| +...+..|=..|.. .++.+
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHcCCCCCccHH
Confidence 367999999998854 4 23333 5555666677899999999999887 55678888888888 89999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhCCC
Q 047392 187 EALATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELPGF 235 (258)
Q Consensus 187 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~----~g~~~~a~~~f~~M~~~~~ 235 (258)
+|.+.|++--+.| +...+..|=..|.. .++.++|.++|++-.+.|.
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999998876 67777778788888 8999999999999998873
No 168
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.67 E-value=0.29 Score=42.80 Aligned_cols=113 Identities=9% Similarity=0.106 Sum_probs=92.2
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh----
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFAR----GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE---- 181 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~---- 181 (258)
.+.++|++.|++..+. | +...+..|-..|.. .++.++|.+.|++..+.| +...+..|-..|..
T Consensus 129 ~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~ 199 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQ-G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG-----NVWSCNQLGYMYSRGLGV 199 (490)
T ss_dssp CCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCC
Confidence 3578999999998754 3 56667777777776 788999999999998876 56678888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhCC
Q 047392 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELPG 234 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~----~g~~~~a~~~f~~M~~~~ 234 (258)
.++.++|.+.|++..+.| +...+..+-..|.. .++.++|.++|++....|
T Consensus 200 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 899999999999988865 66777777777776 789999999999998765
No 169
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.65 E-value=0.04 Score=35.56 Aligned_cols=81 Identities=10% Similarity=0.082 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
...|..+-..+.+.|++++|.+.|++..+... -+...+..+-.+|.+.|++++|.+.|++..+.. +-+...+..+-
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 45677788888999999999999999887641 256678999999999999999999999987642 22455555554
Q ss_pred HHHHH
Q 047392 212 NALCR 216 (258)
Q Consensus 212 ~~~~~ 216 (258)
..+.+
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44443
No 170
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.64 E-value=0.013 Score=52.17 Aligned_cols=91 Identities=10% Similarity=-0.058 Sum_probs=70.7
Q ss_pred HHHccCChHHHHHHHHHHHHcC---CCC-C-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CC-CCC-CHHHHH
Q 047392 141 VFARGNNVKGLWDFLKEMSRRG---NGE-L-VTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-----FR-CRP-DVYAYN 208 (258)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m~~~g---~~~-~-~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~-----~g-~~p-~~~ty~ 208 (258)
.+...|++++|..++++..+.. +.+ . -...+++.|...|...|++++|..++++..+ .| -.| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3567899999999998866542 222 1 1345799999999999999999999998754 22 223 346789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhH
Q 047392 209 VVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 209 ~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
.|-..|...|++++|+.++++-.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999998774
No 171
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.63 E-value=0.036 Score=38.01 Aligned_cols=98 Identities=17% Similarity=0.050 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047392 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228 (258)
Q Consensus 149 ~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~ 228 (258)
++|.+.|++..+.. | -+...+..+-..|...|++++|.+.|++..+.. +.+...|..+-..+.+.|+.++|...|+
T Consensus 2 ~~a~~~~~~al~~~--p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 2 QAITERLEAMLAQG--T-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CCHHHHHHHHHTTT--C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC--C-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34677777776653 2 256789999999999999999999999988753 3457788889999999999999999999
Q ss_pred HhHhCCCCCCCCHHHHHHHHHHH
Q 047392 229 QMELPGFRCPPDVYTYTILISSY 251 (258)
Q Consensus 229 ~M~~~~~~~~pd~~ty~~li~~~ 251 (258)
+.....-. ..+......+...+
T Consensus 78 ~al~~~~~-~~~~~~~~~l~~~l 99 (115)
T 2kat_A 78 SGLAAAQS-RGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHHHHH-HTCHHHHHHHHHHH
T ss_pred HHHHhccc-cccHHHHHHHHHHH
Confidence 98763210 13444544444443
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.63 E-value=0.033 Score=48.84 Aligned_cols=118 Identities=6% Similarity=-0.057 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHhhCCCCCC-------------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHN-------------EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK 177 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~-------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~ 177 (258)
..++|++.|++......-.++ ...|..+-.++.+.|++++|...+++..+.. | -+...|..+-.
T Consensus 283 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p-~~~~a~~~~g~ 359 (457)
T 1kt0_A 283 KYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--S-ANEKGLYRRGE 359 (457)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--C-ccHHHHHHHHH
Confidence 366899999887643211111 5788889999999999999999999998864 2 26778999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHhHh
Q 047392 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR-FLLEQMEL 232 (258)
Q Consensus 178 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~-~~f~~M~~ 232 (258)
+|...|++++|...|++..+.. +-+...|..+-..+.+.|+.+++. .+|..|..
T Consensus 360 a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 360 AQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998742 234567788888888888888766 45666644
No 173
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.60 E-value=0.013 Score=39.61 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
+...+..+-..+.+.|++++|.+.|++..+.... +...|..+-.+|.+.|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD---YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555556666666666666666666554311 23356666666666666666666666544
No 174
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.60 E-value=0.017 Score=57.25 Aligned_cols=95 Identities=21% Similarity=0.284 Sum_probs=50.9
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047392 144 RGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223 (258)
Q Consensus 144 ~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a 223 (258)
..|++++|.++.++.. +..+|..+-.++-+.|++++|.+-|.+- -|...|.-++.+|.+.|++++|
T Consensus 1088 ~i~nldrAiE~Aervn--------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEA 1153 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN--------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEEL 1153 (1630)
T ss_pred HHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHH
Confidence 4455666666655431 2235666666666666666666666442 3555566666666666666666
Q ss_pred HHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCC
Q 047392 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (258)
Q Consensus 224 ~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~ 256 (258)
.+++..-++.. ++....+.+..+|++.|+
T Consensus 1154 IeyL~mArk~~----~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1154 VKYLQMARKKA----RESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHHHhhc----ccccccHHHHHHHHhhcC
Confidence 66665544432 222222235555555543
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.58 E-value=0.019 Score=48.17 Aligned_cols=95 Identities=11% Similarity=-0.061 Sum_probs=67.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHH------------------HHHHHHHHHHhcCChHHHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTS------------------TVTCLIKVLGEEGLVNEALATFYRM 195 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~------------------t~~~li~~~~~~g~~~~a~~l~~~M 195 (258)
.|..+-..+.+.|++++|...|++..+.. | +.. .|+.+-.+|.+.|++++|++.+++.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p--~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--G--DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--C--HHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--c--cchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35556666777888888888887766542 2 222 6777777888888888888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 196 ~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
.+.. +-+...|..+-.+|...|++++|...|++....
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6632 235677777778888888888888888887653
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.58 E-value=0.019 Score=41.12 Aligned_cols=124 Identities=10% Similarity=-0.051 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGN---GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF----RCRP-DV 204 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~----g~~p-~~ 204 (258)
.++..+-..+...|++++|.+.+++..+... .+..-..++..+-..|...|++++|.+.+++..+. +-.+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4577788888899999999999988765421 11111247888999999999999999999997642 1111 14
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhC----CCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 205 YAYNVVINALCRVGNFNKARFLLEQMELP----GFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 205 ~ty~~li~~~~~~g~~~~a~~~f~~M~~~----~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
..+..+-..+...|++++|.+.+++.... +.. .....++..+-..|.+.|+.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 145 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR-IGEGRACWSLGNAYTALGNH 145 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch-HhHHHHHHHHHHHHHHccCH
Confidence 56777788888999999999999987643 210 01133566666667676653
No 177
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.55 E-value=0.013 Score=51.15 Aligned_cols=94 Identities=15% Similarity=0.048 Sum_probs=73.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcC---CCC--CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CC-CCC-CHH
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRG---NGE--LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-----FR-CRP-DVY 205 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g---~~~--~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~-----~g-~~p-~~~ 205 (258)
.+..+.+.|++++|.+++++..+.. +.+ .....+++.|...|...|++++|+.++++..+ .| -.| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3556778899999999999887652 112 11345799999999999999999999998754 22 223 346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 206 AYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 206 ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
+|+.|-..|...|++++|+.++++..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 78999999999999999999998774
No 178
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.51 E-value=0.028 Score=52.05 Aligned_cols=143 Identities=10% Similarity=-0.110 Sum_probs=96.8
Q ss_pred cCHHHHHHHHHHHHhhC---------CCCCC------------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC
Q 047392 110 LGINKATEFYHWVERFF---------HFFHN------------EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT 168 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~---------~~~p~------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 168 (258)
..++.|.++|+...... +. |+ ...|-..+...-+.|.++.|..+|.+..+.-..+...
T Consensus 392 ~~~e~aR~iyek~l~~l~~~~~~~~~~~-p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~ 470 (679)
T 4e6h_A 392 TKIPEIETTILSCIDRIHLDLAALMEDD-PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPD 470 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTH
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhcc-CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChH
Confidence 34778888888876421 11 32 2367788888888899999999999987761111123
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC--CHHHHHH
Q 047392 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP--DVYTYTI 246 (258)
Q Consensus 169 ~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p--d~~ty~~ 246 (258)
.....+.+.-. ..++.+.|.++|+...+. ++-+..-|...+......|+.+.|..+|++.....-. + ....|..
T Consensus 471 lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~--~~~~~~lw~~ 546 (679)
T 4e6h_A 471 IYLENAYIEYH-ISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD--SHLLKMIFQK 546 (679)
T ss_dssp HHHHHHHHHHT-TTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS--TTHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC--HHHHHHHHHH
Confidence 33333444322 135689999999998764 3345666778888888899999999999998876411 1 3346777
Q ss_pred HHHHHHHcCCC
Q 047392 247 LISSYCKYGMQ 257 (258)
Q Consensus 247 li~~~~~~g~~ 257 (258)
.+.-=.+.|+.
T Consensus 547 ~~~fE~~~G~~ 557 (679)
T 4e6h_A 547 VIFFESKVGSL 557 (679)
T ss_dssp HHHHHHHTCCS
T ss_pred HHHHHHHcCCH
Confidence 77776677764
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.47 E-value=0.025 Score=39.68 Aligned_cols=83 Identities=14% Similarity=-0.003 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+++|++.|++..... +-+...|..+-.++.+.|+.++|...|++..+.. | -+...+..+-.+|.+.|++++|.+
T Consensus 32 ~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P-~~~~~~~~la~~~~~~g~~~~A~~ 106 (121)
T 1hxi_A 32 NLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--P-KDIAVHAALAVSHTNEHNANAALA 106 (121)
T ss_dssp CHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3679999999987532 2367788888899999999999999999988864 2 155678899999999999999999
Q ss_pred HHHHHHhC
Q 047392 191 TFYRMKQF 198 (258)
Q Consensus 191 l~~~M~~~ 198 (258)
.|++..+.
T Consensus 107 ~~~~al~~ 114 (121)
T 1hxi_A 107 SLRAWLLS 114 (121)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99998763
No 180
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.43 E-value=0.016 Score=50.72 Aligned_cols=89 Identities=8% Similarity=-0.093 Sum_probs=68.7
Q ss_pred ccCChHHHHHHHHHHHHc---CCCCC-c-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CC-CCCC-HHHHHHHH
Q 047392 144 RGNNVKGLWDFLKEMSRR---GNGEL-V-TTSTVTCLIKVLGEEGLVNEALATFYRMKQ-----FR-CRPD-VYAYNVVI 211 (258)
Q Consensus 144 ~~g~~~~a~~~~~~m~~~---g~~~~-~-~~~t~~~li~~~~~~g~~~~a~~l~~~M~~-----~g-~~p~-~~ty~~li 211 (258)
..|++++|..++++..+. -+.+. | ...+++.|...|...|++++|+.++++..+ .| -.|+ ..+||.|=
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999886553 12221 1 345799999999999999999999999754 23 2333 46699999
Q ss_pred HHHHHcCCHHHHHHHHHHhHh
Q 047392 212 NALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 212 ~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..|...|++++|+.+|++-..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988743
No 181
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.40 E-value=0.055 Score=53.73 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
+++|++.|.+. -|...|..++.+|.+.|++++|.+++..-++.. + +....+.+..+|++.+++++
T Consensus 1121 ~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~--e~~Idt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A 1121 VKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--R--ESYVETELIFALAKTNRLAE 1185 (1630)
T ss_pred HHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--c--cccccHHHHHHHHhhcCHHH
Confidence 45555555332 344555666666666666666666665433322 1 11112335555555555443
No 182
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.34 E-value=0.058 Score=38.06 Aligned_cols=95 Identities=12% Similarity=0.017 Sum_probs=70.5
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC----HHHHHHHHHHHHhcCCh
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT----TSTVTCLIKVLGEEGLV 185 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~t~~~li~~~~~~g~~ 185 (258)
..+++|++.|++..+. -+-+...|+.+-.+|.+.|++++|.+.+++..+.......+ ..+|..+=.+|...|++
T Consensus 22 ~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~ 99 (127)
T 4gcn_A 22 KDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDL 99 (127)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCH
Confidence 3467999999987743 23457788889999999999999999999877642111111 23577777888999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHH
Q 047392 186 NEALATFYRMKQFRCRPDVYAYN 208 (258)
Q Consensus 186 ~~a~~l~~~M~~~g~~p~~~ty~ 208 (258)
++|++.|++-... .||..+..
T Consensus 100 ~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 100 SLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHHHhh--CcCHHHHH
Confidence 9999999997663 46765543
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.32 E-value=0.026 Score=47.42 Aligned_cols=115 Identities=10% Similarity=0.085 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHH------------------HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEV------------------TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT 173 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~------------------~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~ 173 (258)
+++|++.|++.... .|+.. .|..+-.++.+.|++++|...+++..+.. | -+...|.
T Consensus 195 ~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p-~~~~a~~ 268 (338)
T 2if4_A 195 LEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE--E-KNPKALF 268 (338)
T ss_dssp CHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC--T-TCHHHHH
T ss_pred HHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CCHHHHH
Confidence 45888888886532 24433 78888899999999999999999988764 2 2667899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHH-HHHcCCHHHHHHHHHHhHhCC
Q 047392 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPD-VYAYNVVINA-LCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 174 ~li~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~li~~-~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.+-.+|...|++++|.+.|++..+. .|+ ...+..+-.. ....+..+.+..+|.+|....
T Consensus 269 ~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 269 RRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999998753 343 3344444433 234566788889999987643
No 184
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.30 E-value=0.028 Score=37.84 Aligned_cols=87 Identities=15% Similarity=-0.085 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
+...+..+-.+|.+.|++++|++.|++..+.. +-+...|..+-.+|.+.|++++|.+.|++.....- -.++.....-+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~-~~~~~~~~~~l 83 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR-EEGTQKDLSEL 83 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh-cCCchhHHHHH
Confidence 55678899999999999999999999998753 23567889999999999999999999998875321 12677777777
Q ss_pred HHHHHHcCC
Q 047392 248 ISSYCKYGM 256 (258)
Q Consensus 248 i~~~~~~g~ 256 (258)
-..+.+.+.
T Consensus 84 ~~~l~~~~~ 92 (100)
T 3ma5_A 84 QDAKLKAEG 92 (100)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHccc
Confidence 777666543
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.29 E-value=0.099 Score=38.95 Aligned_cols=112 Identities=11% Similarity=-0.041 Sum_probs=83.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc------C-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV------T-----TSTVTCLIKVLGEEGLVNEALATFYRMKQF----- 198 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------~-----~~t~~~li~~~~~~g~~~~a~~l~~~M~~~----- 198 (258)
+...-..+.+.|++++|.+.|++-.+-. |.. + ...|+.+-.++.+.|++++|+..+++-.+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 4445566788999999999999987753 320 2 237999999999999999999999998763
Q ss_pred CCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHhHh-----CCCCCCCCHHHHHHHHHH
Q 047392 199 RCRPDV-YAY----NVVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVYTYTILISS 250 (258)
Q Consensus 199 g~~p~~-~ty----~~li~~~~~~g~~~~a~~~f~~M~~-----~~~~~~pd~~ty~~li~~ 250 (258)
.+.||- ..| ...=.++...|++++|...|++-.+ .|+. +........|..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~--~~~~~~~~~~~~ 151 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET--PGKERMMEVAID 151 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC--TTHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHHHH
Confidence 124653 456 6777888899999999999998854 4543 666555555543
No 186
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.22 E-value=0.013 Score=50.83 Aligned_cols=130 Identities=11% Similarity=-0.021 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHH-HHHhcCChHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIK-VLGEEGLVNEALA 190 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~-~~~~~g~~~~a~~ 190 (258)
.+.|.+.|++..+.. +.+..+|..+-..+.+.|++++|.+.|++..+....+......+..+-. .+...|+.++|++
T Consensus 316 ~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~ 393 (472)
T 4g1t_A 316 IGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393 (472)
T ss_dssp HHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 567777777766432 2334567888899999999999999999988764322111112222222 2356789999999
Q ss_pred HHHHHHhCC-----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHH
Q 047392 191 TFYRMKQFR-----------------------CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244 (258)
Q Consensus 191 l~~~M~~~g-----------------------~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty 244 (258)
.|++..+.. -+.+..+|+.+=..|...|+.++|.+.|++-.+.+- ..|+..+|
T Consensus 394 ~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~-~~p~a~~~ 469 (472)
T 4g1t_A 394 HFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS-LIPSASSW 469 (472)
T ss_dssp HHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCcHhhc
Confidence 988865432 134567788888888889999999999999887653 23665554
No 187
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.16 E-value=0.14 Score=44.18 Aligned_cols=101 Identities=11% Similarity=-0.073 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC---CCC--CcCHHHHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCC
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG---NGE--LVTTSTVTCLIKVLGEE--GLVNEALATFYRMKQFRCRP 202 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~--~~~~~t~~~li~~~~~~--g~~~~a~~l~~~M~~~g~~p 202 (258)
....+|+.+-..|...|++++|...+++..+-. ..+ .....+|+.+-.++.+. +++++|.+.|++..+. .|
T Consensus 92 ~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p 169 (472)
T 4g1t_A 92 RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KP 169 (472)
T ss_dssp TTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--ST
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CC
Confidence 346788888888999999999988887765421 010 11234555554455444 4688898888887653 24
Q ss_pred C-HHHHHHHHHH---HHHcCCHHHHHHHHHHhHh
Q 047392 203 D-VYAYNVVINA---LCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 203 ~-~~ty~~li~~---~~~~g~~~~a~~~f~~M~~ 232 (258)
+ ...+..+... +...++.++|.+.|++...
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 3 3333333222 3345566666666666655
No 188
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.13 E-value=0.056 Score=50.02 Aligned_cols=133 Identities=11% Similarity=0.015 Sum_probs=95.6
Q ss_pred ccCHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH
Q 047392 109 TLGINKATEFYHWVERF-FHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE 187 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~-~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~ 187 (258)
..+++.|.++|...... ....+......+.+.-.+ .++.+.|..+|+...+. ++- +...|...++.....|+.+.
T Consensus 447 ~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~--~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FAT--DGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTT--CHHHHHHHHHHHHHHTCHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCC--chHHHHHHHHHHHhCCCHHH
Confidence 34578999999998754 223333443333333222 35599999999998887 433 55567888888888999999
Q ss_pred HHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 188 ALATFYRMKQFRCRP--DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 188 a~~l~~~M~~~g~~p--~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
|..+|++.....-.+ ....|...+.-=.+.|+.+.+..+.++|.+.- |+......+++
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~----P~~~~~~~f~~ 582 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF----PEVNKLEEFTN 582 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS----TTCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCcHHHHHHH
Confidence 999999988754211 34678888888889999999999999999854 66544444443
No 189
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.57 E-value=0.054 Score=44.42 Aligned_cols=111 Identities=14% Similarity=0.002 Sum_probs=77.9
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHH
Q 047392 137 EMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV----YAYNVVIN 212 (258)
Q Consensus 137 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~----~ty~~li~ 212 (258)
.+...+...|++++|.++|+.+...+ | +....-.+-..+.+.|++++|+..|++.... |+. ..+..+=.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p--~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--S--EHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--C--HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--C--chHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHHHHHHHHH
Confidence 35667888999999999999987654 3 3335566666899999999999999865442 322 24556667
Q ss_pred HHHHcCCHHHHHHHHHHhHhCCCCCCCCH--HHHHHHHHHHHHcCC
Q 047392 213 ALCRVGNFNKARFLLEQMELPGFRCPPDV--YTYTILISSYCKYGM 256 (258)
Q Consensus 213 ~~~~~g~~~~a~~~f~~M~~~~~~~~pd~--~ty~~li~~~~~~g~ 256 (258)
++.+.|++++|+..|++....... |.. ......-.++.+.|+
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~--P~~~~da~~~~glaL~~lGr 223 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAG--EACARAIAWYLAMARRSQGN 223 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTT--TTTHHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCC--ccccHHHHHHHHHHHHHcCC
Confidence 788999999999999999854422 542 233333344445554
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.40 E-value=0.17 Score=42.94 Aligned_cols=91 Identities=10% Similarity=-0.006 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 210 (258)
+...|..+-.++.+.|++++|.+.+++..+.. | -+...|..+-.+|.+.|++++|.+.|++..+.. +-+...+..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l 347 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID--P-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAEL 347 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--c-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 35678888889999999999999999998763 2 256688999999999999999999999987742 2256667777
Q ss_pred HHHHHHcCCHHHHHH
Q 047392 211 INALCRVGNFNKARF 225 (258)
Q Consensus 211 i~~~~~~g~~~~a~~ 225 (258)
-..+.+.++.+++.+
T Consensus 348 ~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777776654
No 191
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.33 E-value=0.19 Score=40.75 Aligned_cols=85 Identities=11% Similarity=-0.150 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCC-CHHHHHH
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP-DVYTYTI 246 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~p-d~~ty~~ 246 (258)
+...+..+-..+.+.|++++|.+.|++..+.. +-+...|..+-..+.+.|++++|...|++..... | +...|..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~ 77 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD----GQSVKAHFF 77 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC----TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCCHHHHHH
Confidence 44568888899999999999999999988742 2377888999999999999999999999998754 4 4567777
Q ss_pred HHHHHHHcCCC
Q 047392 247 LISSYCKYGMQ 257 (258)
Q Consensus 247 li~~~~~~g~~ 257 (258)
+-.+|.+.|+.
T Consensus 78 lg~~~~~~g~~ 88 (281)
T 2c2l_A 78 LGQCQLEMESY 88 (281)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHcCCH
Confidence 77888887764
No 192
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.25 E-value=0.15 Score=44.54 Aligned_cols=86 Identities=8% Similarity=-0.114 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhh--CCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc-----CCCCCcCHHHHHHHHHHHH
Q 047392 112 INKATEFYHWVERF--FHFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRR-----GNGELVTTSTVTCLIKVLG 180 (258)
Q Consensus 112 ~~~a~~~f~~m~~~--~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~~~~~t~~~li~~~~ 180 (258)
.++|.+++++.... .-+-|+ ..+++.|...|...|++++|..++++..+- |-.-.-...+|+.|-..|.
T Consensus 314 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~ 393 (433)
T 3qww_A 314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYM 393 (433)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 57888888775432 122233 467999999999999999999999886544 3221123457999999999
Q ss_pred hcCChHHHHHHHHHHHh
Q 047392 181 EEGLVNEALATFYRMKQ 197 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~ 197 (258)
..|++++|+.++++..+
T Consensus 394 ~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 394 GLENKAAGEKALKKAIA 410 (433)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHH
Confidence 99999999999998754
No 193
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.22 E-value=0.25 Score=35.95 Aligned_cols=69 Identities=12% Similarity=0.017 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ 205 (258)
...|..+-.++.+.|++++|...+++..+.. | -+...|..+-.+|...|++++|...|++..+. .|+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE--E-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--C-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 3578888889999999999999999998864 2 25678999999999999999999999998874 36544
No 194
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.20 E-value=0.089 Score=34.70 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=40.3
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047392 139 GIVFARGNNVKGLWDFLKEMSRRGNGELVTTS-TVTCLIKVLGEEGLVNEALATFYRMKQF 198 (258)
Q Consensus 139 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-t~~~li~~~~~~g~~~~a~~l~~~M~~~ 198 (258)
...+.+.|++++|.+.|++..+.. | -+.. .|..+-.+|.+.|++++|.+.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~--p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE--P-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--S-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--C-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345566788888888888877653 1 1445 6777777788888888888888887664
No 195
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.18 Score=42.89 Aligned_cols=122 Identities=9% Similarity=-0.000 Sum_probs=62.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCH----HHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCC-H
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTT----STVTCLIKVLGEEGLVNEALATFYRMKQ----FRCRPD-V 204 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~----~t~~~li~~~~~~g~~~~a~~l~~~M~~----~g~~p~-~ 204 (258)
++..|...|.+.|++++|.+.+.+....--.. .+. .+.+.+=..+...|+.++|.+++.+... .+..+. .
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQF-AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKH 135 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS-CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 35566677777777777777776654421000 011 1122222223344666777776666542 222222 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhC--CCCCCCC-HHHHHHHHHHHHHcCC
Q 047392 205 YAYNVVINALCRVGNFNKARFLLEQMELP--GFRCPPD-VYTYTILISSYCKYGM 256 (258)
Q Consensus 205 ~ty~~li~~~~~~g~~~~a~~~f~~M~~~--~~~~~pd-~~ty~~li~~~~~~g~ 256 (258)
.++..+...+...|++++|..++++.... +..-+|. ..+|..+...|...|+
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN 190 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc
Confidence 45566666677777777777776665431 1100122 2345555555655554
No 196
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.65 E-value=1.8 Score=36.75 Aligned_cols=73 Identities=10% Similarity=-0.100 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHH
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~ 246 (258)
+..+|.++-..+...|++++|...+++..+.+ |+...|..+=..+.-.|+.++|.+.|++-.... |...||..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~----P~~~t~~~ 348 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR----PGANTLYW 348 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CSHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCcChHHH
Confidence 77788888888888899999999999999876 887777666677788999999999999998844 88888754
No 197
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.63 E-value=0.15 Score=33.53 Aligned_cols=59 Identities=24% Similarity=0.193 Sum_probs=48.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVY-AYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 175 li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~-ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
....+.+.|++++|.+.|++..+.. +-+.. .|..+-..+.+.|++++|.+.|++.....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3456788999999999999988743 23456 78888889999999999999999998754
No 198
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.63 E-value=0.34 Score=35.74 Aligned_cols=64 Identities=9% Similarity=-0.051 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 168 TTSTVTCLIKVLGEEG---LVNEALATFYRMKQFRCRP--DVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g---~~~~a~~l~~~M~~~g~~p--~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
+..+.-.+-.++++.+ ++++++.+|++..+.. .| ....+-.|=-++.+.|+.++|.++++...+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3333344444444444 3445555555544432 12 112222222333555555555555555544
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=94.61 E-value=0.12 Score=38.41 Aligned_cols=92 Identities=11% Similarity=-0.032 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCh----------HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNV----------KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE 181 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~----------~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~ 181 (258)
+++|++.|+...+.. +-+...|+.+-.++.+.+++ ++|...|++-.+-. |+ +...|..+=.+|..
T Consensus 18 feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 18 FEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cC-cHHHHHHHHHHHHH
Confidence 666777766665321 23555666666666666654 36666666666543 21 33456666666665
Q ss_pred cC-----------ChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047392 182 EG-----------LVNEALATFYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 182 ~g-----------~~~~a~~l~~~M~~~g~~p~~~ty~~l 210 (258)
.| ++++|.+.|++..+. .|+...|..-
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~a 130 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKS 130 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 53 566666666665542 3555544333
No 200
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.47 E-value=0.29 Score=42.53 Aligned_cols=87 Identities=6% Similarity=-0.132 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHhhC--CCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc-----CCCCCcCHHHHHHHHHHH
Q 047392 111 GINKATEFYHWVERFF--HFFHN----EVTCKEMGIVFARGNNVKGLWDFLKEMSRR-----GNGELVTTSTVTCLIKVL 179 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~--~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~~~~~t~~~li~~~ 179 (258)
..++|.+++++..... -+-|+ ..+++.|...|...|++++|..++++..+- |-.-.....+++.|-..|
T Consensus 302 ~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~ 381 (429)
T 3qwp_A 302 KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQ 381 (429)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHH
Confidence 3678888888876421 12233 557899999999999999999999876543 221112345799999999
Q ss_pred HhcCChHHHHHHHHHHHh
Q 047392 180 GEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 180 ~~~g~~~~a~~l~~~M~~ 197 (258)
...|++++|+.++++..+
T Consensus 382 ~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 382 LHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 999999999999998653
No 201
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.10 E-value=0.52 Score=43.64 Aligned_cols=85 Identities=14% Similarity=0.106 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 209 (258)
.+...|..|-..+.+.|+++.|.+.|..+. | |..+...|...|+.+...++-+.....|- |+.
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~--------d---~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~ 741 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAH--------D---LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNL 741 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT--------C---HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc--------C---hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHH
Confidence 456778888888888888888888887762 3 56666666667777766666665555442 355
Q ss_pred HHHHHHHcCCHHHHHHHHHHhH
Q 047392 210 VINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 210 li~~~~~~g~~~~a~~~f~~M~ 231 (258)
-..+|.+.|++++|.+++.++.
T Consensus 742 A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 742 AFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHcC
Confidence 5566777777777777777664
No 202
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.72 E-value=1.6 Score=38.51 Aligned_cols=110 Identities=14% Similarity=0.056 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCK--EMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~--~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
+++.|.++|+.. ...+ .+...|- +.+...+ .++.+.|..+|+...+.. +- +...+...++-..+.|+.+.|
T Consensus 301 ~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~--~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 301 GLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PD--STLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp CHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TT--CHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CC--CHHHHHHHHHHHHHcCCHHHH
Confidence 477899999888 3322 2333332 3333222 336999999999988763 22 233466677777889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..+|+... -....|...+.-=...|+.+.+..+++++..
T Consensus 374 R~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 374 RALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999983 2577788888877888999999999988864
No 203
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=93.68 E-value=1.5 Score=36.16 Aligned_cols=102 Identities=8% Similarity=-0.069 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChH--HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC-----
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVK--GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL----- 184 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~----- 184 (258)
+++++++++.+.+. -+.|-.+|+----.+.+.|+.+ ++.++++++.+.... |-..|+-.-..+.+.|+
T Consensus 126 ~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~---N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 126 PYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK---NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp THHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHSSGGGCCHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhccccchhh
Confidence 34666666666542 2234455554444444455555 666666666655321 44445544444444444
Q ss_pred -hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047392 185 -VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (258)
Q Consensus 185 -~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 219 (258)
++++++.++++.... +-|...|+-+-..+.+.|+
T Consensus 201 ~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 555555555544321 2233444444333333333
No 204
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.68 E-value=0.94 Score=38.32 Aligned_cols=123 Identities=10% Similarity=-0.028 Sum_probs=84.0
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHc----CCCCCcCHHHHHHHHHHHH
Q 047392 109 TLGINKATEFYHWVERFFHFFHNEV----TCKEMGIVFARGNNVKGLWDFLKEMSRR----GNGELVTTSTVTCLIKVLG 180 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~~~~p~~~----~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~t~~~li~~~~ 180 (258)
...+++|.+.+.......+-.++.. ..+.+-..+...|+.++|.+++.+.... +..+ .-..++..|...|.
T Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~ 146 (434)
T 4b4t_Q 68 MGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF-LKHSLSIKLATLHY 146 (434)
T ss_dssp HTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS-SHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH-HHHHHHHHHHHHHH
Confidence 4446788888887654322223322 2222223334568899999988776543 2221 12457888999999
Q ss_pred hcCChHHHHHHHHHHHhC--C---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 181 EEGLVNEALATFYRMKQF--R---CRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~--g---~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..|++++|..++++.... + -.-...+|..+...|...|++++|..++++...
T Consensus 147 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 147 QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999999999999987542 1 122346788999999999999999999988754
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.64 E-value=3.9 Score=36.78 Aligned_cols=132 Identities=9% Similarity=-0.039 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhc
Q 047392 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN----------VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEE 182 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~ 182 (258)
++|++.++++-... +-+...|+.-=..+.+.|+ ++++.++++++.+...+ +...|+.--..+.+.
T Consensus 46 eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK---~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 46 ESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---SYGTWHHRCWLLSRL 120 (567)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc
Confidence 48899999887431 2334556654444444555 89999999999987522 677899988899999
Q ss_pred C--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 183 G--LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG-NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 183 g--~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g-~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
| +++++++.+++|.+.. +-|...|+.---.+.+.| ..+++.+.++++.+... -|...|+..-..+.+
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p---~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF---SNYSSWHYRSCLLPQ 190 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC---CCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC---CCccHHHHHHHHHHh
Confidence 9 7799999999998754 457888888777788888 89999999999998764 466677766665554
No 206
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=93.60 E-value=0.63 Score=34.55 Aligned_cols=97 Identities=10% Similarity=-0.031 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCC-------------HHHHHHHHHHHHccCChHHHHHHHHHHHHc-----CCCCCcCHHHH
Q 047392 111 GINKATEFYHWVERFFHFFHN-------------EVTCKEMGIVFARGNNVKGLWDFLKEMSRR-----GNGELVTTSTV 172 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~-------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~~~~~t~ 172 (258)
.+++|++.|++..+- .|+ ...|+.+-.++.+.|++++|...+++-.+. -+.| -+...|
T Consensus 26 ~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p-d~~~A~ 101 (159)
T 2hr2_A 26 EYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ-DEGKLW 101 (159)
T ss_dssp CHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS-THHHHH
T ss_pred CHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC-chHHHH
Confidence 367889998886632 133 238888999999999999999999998775 0123 134466
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 047392 173 ----TCLIKVLGEEGLVNEALATFYRMKQ-----FRCRPDVYAYNVVI 211 (258)
Q Consensus 173 ----~~li~~~~~~g~~~~a~~l~~~M~~-----~g~~p~~~ty~~li 211 (258)
...=.++...|++++|+.-|++..+ .|+.+........|
T Consensus 102 ~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 102 ISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred HHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 7777899999999999999999864 46666555444333
No 207
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=93.26 E-value=2.2 Score=36.93 Aligned_cols=108 Identities=11% Similarity=0.022 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcc----CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH-H--HhcCC
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARG----NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKV-L--GEEGL 184 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~----g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~-~--~~~g~ 184 (258)
.++|++.|++..+. | .++...+..|-..|... ++.++|.+.|++.. .| +...+..|-.. | ...++
T Consensus 195 ~~~A~~~~~~aa~~-g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g-----~~~a~~~Lg~~~~~~~~~~d 266 (452)
T 3e4b_A 195 QAELLKQMEAGVSR-G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG-----YPASWVSLAQLLYDFPELGD 266 (452)
T ss_dssp HHHHHHHHHHHHHT-T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG-----STHHHHHHHHHHHHSGGGCC
T ss_pred HHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC-----CHHHHHHHHHHHHhCCCCCC
Confidence 55666666666532 2 23333333344444333 46666666666655 33 22234444333 2 34566
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHhH
Q 047392 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVG-----NFNKARFLLEQME 231 (258)
Q Consensus 185 ~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g-----~~~~a~~~f~~M~ 231 (258)
.++|.+.|++-.+.| +...+..|=..|. .| +.++|.++|++-.
T Consensus 267 ~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 267 VEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 666666666666554 4444444444443 33 5556666555544
No 208
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=93.07 E-value=3.2 Score=34.17 Aligned_cols=137 Identities=8% Similarity=-0.005 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----Hcc---CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcC
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVF----ARG---NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG 183 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~----~~~---g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g 183 (258)
.+++++++++.+.... +-+..+|+---..+ .+. ++++++.++++.+.+... -|-..|+---..+.+.|
T Consensus 84 ~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p---kny~aW~~R~~vl~~l~ 158 (306)
T 3dra_A 84 NLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP---KNHHVWSYRKWLVDTFD 158 (306)
T ss_dssp CHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhc
Confidence 4779999999987532 23344455433333 344 789999999999998752 27788999988999999
Q ss_pred ChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcC
Q 047392 184 LVN--EALATFYRMKQFRCRPDVYAYNVVINALCRVGN------FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (258)
Q Consensus 184 ~~~--~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~------~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g 255 (258)
+++ ++++.+++|.+.. .-|...|+---..+.+.|+ ++++.+.++++..... -|...|+.+-..+.+.|
T Consensus 159 ~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p---~n~SaW~y~~~ll~~~~ 234 (306)
T 3dra_A 159 LHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP---QNPSTWNYLLGIHERFD 234 (306)
T ss_dssp CTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS---SCHHHHHHHHHHHHHTT
T ss_pred ccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC---CCccHHHHHHHHHHhcC
Confidence 988 9999999998754 3577788766666666666 8999999999988663 46667877776676666
Q ss_pred C
Q 047392 256 M 256 (258)
Q Consensus 256 ~ 256 (258)
+
T Consensus 235 ~ 235 (306)
T 3dra_A 235 R 235 (306)
T ss_dssp C
T ss_pred C
Confidence 4
No 209
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=92.91 E-value=1.7 Score=37.64 Aligned_cols=110 Identities=14% Similarity=0.137 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhc----CCh
Q 047392 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGN---NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEE----GLV 185 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~----g~~ 185 (258)
+.+..+++.... ..|+ .+..|-..|.+.| +.++|.+.|++-.+.|. ++...+..|-..|... ++.
T Consensus 162 ~~a~~~~~~a~~---~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~---~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 162 DDVERICKAALN---TTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT---VTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp HHHHHHHHHHTT---TCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---SCHHHHHHHHHHHTCGGGSSCCH
T ss_pred HHHHHHHHHHHc---CCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCCCCCH
Confidence 344455544432 1243 6777888888899 88999999999998873 3554446666666555 799
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHhHhCC
Q 047392 186 NEALATFYRMKQFRCRPDVYAYNVVINA-L--CRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 186 ~~a~~l~~~M~~~g~~p~~~ty~~li~~-~--~~~g~~~~a~~~f~~M~~~~ 234 (258)
++|.+.|++.. .| +...+..|=.. + ...++.++|.++|++-.+.|
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 99999999987 44 44444444444 2 45899999999999998776
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=92.32 E-value=2.1 Score=30.27 Aligned_cols=80 Identities=9% Similarity=0.081 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh----cC
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFAR----GNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE----EG 183 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~----~g 183 (258)
+++|++.|++..+. -+...+..|-..|.. .++.++|.+.|++-.+.| +...+..|=..|.. .+
T Consensus 41 ~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~ 111 (138)
T 1klx_A 41 KQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-----DQDGCLILGYKQYAGKGVVK 111 (138)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHCCCCCCc
Confidence 56799999998754 466777777777877 789999999999999887 55578888888888 89
Q ss_pred ChHHHHHHHHHHHhCCC
Q 047392 184 LVNEALATFYRMKQFRC 200 (258)
Q Consensus 184 ~~~~a~~l~~~M~~~g~ 200 (258)
+.++|.+.|++-.+.|.
T Consensus 112 d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 112 NEKQAVKTFEKACRLGS 128 (138)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 99999999999988774
No 211
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.29 E-value=1.1 Score=30.04 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC----CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 132 EVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN----GELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~----~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
..-|-.|-..+.+.|+++.|...|++-.+.-- ........+..|-.+|.+.|++++|...+++..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34455566666777777777777777555310 0012344667777777777777777777777665
No 212
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.94 E-value=1.4 Score=30.02 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 186 ~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
-++.+-++.+-...+.|++....+.+.+|=|.+++..|.++|+-.+.+ |.+...+|..++.
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K---~~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK---AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---hcCchhhHHHHHH
Confidence 344444455555555555555555555555555555555555555543 2233334555544
No 213
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=91.85 E-value=5.2 Score=35.93 Aligned_cols=135 Identities=10% Similarity=-0.048 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcC-ChHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGN--NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG-LVNEA 188 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g-~~~~a 188 (258)
.++++++++.+-+. -+-+..+|+----.+.+.| +++++.++++++.+... -|.+.|+.--..+.+.| ..+++
T Consensus 89 ~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~---~N~~aW~~R~~~l~~l~~~~~~e 163 (567)
T 1dce_A 89 VKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE---RNFHCWDYRRFVAAQAAVAPAEE 163 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc---ccccHHHHHHHHHHHcCCChHHH
Confidence 67899999998753 2356667777666777888 67999999999999852 27788999988899999 89999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHhHhCCCCCCC-CHHHHHHHHHHHHH
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRV--------------GNFNKARFLLEQMELPGFRCPP-DVYTYTILISSYCK 253 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~--------------g~~~~a~~~f~~M~~~~~~~~p-d~~ty~~li~~~~~ 253 (258)
++.++++.+.. .-|...|+..-..+.+. +.++++.+.+++..... | |...|..+-..+.+
T Consensus 164 l~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~----P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD----PNDQSAWFYHRWLLGR 238 (567)
T ss_dssp HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC----SSCSHHHHHHHHHHSC
T ss_pred HHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC----CCCccHHHHHHHHHhc
Confidence 99999998754 45778888877777663 55789999999888744 4 45566665555554
Q ss_pred cCC
Q 047392 254 YGM 256 (258)
Q Consensus 254 ~g~ 256 (258)
.|+
T Consensus 239 ~~~ 241 (567)
T 1dce_A 239 AEP 241 (567)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 214
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=91.52 E-value=1.2 Score=32.99 Aligned_cols=102 Identities=20% Similarity=0.121 Sum_probs=78.8
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 047392 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL----------VNEALATFYRMKQFRCRP-DVYAYNVVI 211 (258)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~----------~~~a~~l~~~M~~~g~~p-~~~ty~~li 211 (258)
.|.+.+++|.+.+++-.+..- -+...|+.+=.++...++ +++|+..|++..+.. | +...|..+=
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P---~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP---LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHH
Confidence 455678899999999887742 256677777777777766 469999999998743 5 556788888
Q ss_pred HHHHHc-----------CCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 212 NALCRV-----------GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 212 ~~~~~~-----------g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
.+|... |++++|.+.|++..+. .|+-..|..-+...-+
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l----~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE----QPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHT
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHh
Confidence 888776 4899999999999984 4999999888776544
No 215
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.49 E-value=1.2 Score=37.99 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=55.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHH
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ-----FRCRPDVYA 206 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~-----~g~~p~~~t 206 (258)
...++..+...|+.+++...+..+.... + .+...|..+|.+|.+.|+..+|++.|++..+ .|+.|+..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P--~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-P--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-T--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4556777788899999988888887663 2 3777899999999999999999999988754 589998776
No 216
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=91.28 E-value=5.9 Score=33.27 Aligned_cols=136 Identities=6% Similarity=-0.057 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcc-C-ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChH---
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARG-N-NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN--- 186 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~-g-~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~--- 186 (258)
+++++++++.+... -+-+..+|+----.+.+. + +.+++.++++.+.+... -|-..|+---..+.+.|..+
T Consensus 105 l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp---kNy~AW~~R~wvl~~l~~~~~~~ 179 (349)
T 3q7a_A 105 LEDELRLMNEFAVQ--NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP---KNYHTWAYLHWLYSHFSTLGRIS 179 (349)
T ss_dssp HHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT---TCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhccccccc
Confidence 67889999888742 345566777655555554 5 78889999999887642 26677877766666666666
Q ss_pred -----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHc
Q 047392 187 -----EALATFYRMKQFRCRPDVYAYNVVINALCRVGN-------FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254 (258)
Q Consensus 187 -----~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~-------~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~ 254 (258)
++++.++++.+.. .-|...|+---..+.+.++ ++++.+.+++...... -|...|+.+-..+.+.
T Consensus 180 ~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P---~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 180 EAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP---HNVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhc
Confidence 8899999888754 3577888887777777776 6889999988887652 3566677666555555
Q ss_pred CC
Q 047392 255 GM 256 (258)
Q Consensus 255 g~ 256 (258)
|+
T Consensus 256 ~~ 257 (349)
T 3q7a_A 256 SL 257 (349)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 217
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.92 E-value=4 Score=30.71 Aligned_cols=95 Identities=7% Similarity=-0.053 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
++.|.++-+++ -+...|..|-....+.|+++-|.+.|.... | |..|.--|.-.|+.++-.++
T Consensus 21 l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~--------D---~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 21 LDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH--------S---FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT--------C---HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC--------C---HHHHHHHHHHhCCHHHHHHH
Confidence 56777776655 367789999999999999999999887752 4 66676677777777776666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M 230 (258)
-+.-...| -+|.-...+.-.|+++++.++|.+.
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 55544443 1455566666666777666666544
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=90.58 E-value=2.5 Score=27.85 Aligned_cols=63 Identities=11% Similarity=-0.076 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 171 TVTCLIKVLGEEGL---VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 171 t~~~li~~~~~~g~---~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.+..+-.++...++ .++|..+|++..+.. +-++.....+=..+.+.|++++|...|+++....
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34444444433332 455666665555421 1122333333344555666666666666665543
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.35 E-value=3.9 Score=29.64 Aligned_cols=67 Identities=19% Similarity=0.131 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCC
Q 047392 169 TSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236 (258)
Q Consensus 169 ~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~ 236 (258)
..-++.-++.....|+-|+-.++..+... +-+|++.-.-.+-.+|.+.|+..+|.+++.+-.++|++
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33567778888888999999999998643 44688888889999999999999999999999999963
No 220
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.70 E-value=2.4 Score=30.44 Aligned_cols=60 Identities=18% Similarity=0.249 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 187 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
+..+-++.+-...+.|++....+.+.+|=|.+++..|.++|+-.+.+ |.+...+|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K---~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK---AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---cCCchhhHHHHHH
Confidence 34444444444555555555555555555555555555555555543 2244444555544
No 221
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=89.36 E-value=5.2 Score=35.19 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047392 133 VTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (258)
Q Consensus 133 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~--~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 210 (258)
..|-..+...-+.+.++.|..+|+.. +. |..+..+|- +.+...+ .++.+.|..+|+...+.. .-+...|...
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~---~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~y 360 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN---EGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEF 360 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT---SCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC---CCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 34555566666678899999999988 32 222444454 3333333 337999999999987642 1234456677
Q ss_pred HHHHHHcCCHHHHHHHHHHh
Q 047392 211 INALCRVGNFNKARFLLEQM 230 (258)
Q Consensus 211 i~~~~~~g~~~~a~~~f~~M 230 (258)
++-..+.|+.+.|..+|++.
T Consensus 361 id~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 361 FLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 88788899999999999886
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=89.20 E-value=3.5 Score=27.46 Aligned_cols=71 Identities=17% Similarity=0.066 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCH
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQF------RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~------g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~ 241 (258)
+..-+-.|=..+.+.|+++.|...|++..+. +-.+....|..|-.++.+.|+++.|..++++..... |+-
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~----P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD----PEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----CCC
Confidence 4445667778888999999999999886542 123567788889999999999999999999998733 664
Q ss_pred H
Q 047392 242 Y 242 (258)
Q Consensus 242 ~ 242 (258)
.
T Consensus 80 ~ 80 (104)
T 2v5f_A 80 Q 80 (104)
T ss_dssp H
T ss_pred H
Confidence 3
No 223
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.62 E-value=2.5 Score=35.99 Aligned_cols=70 Identities=11% Similarity=-0.017 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh-----CCCCCCCCHHH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVYT 243 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~-----~~~~~~pd~~t 243 (258)
....++..+...|+.++|...+...... .+.+...|-.+|.++.+.|+..+|.+.|++... .|+. |...+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~--P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID--PGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC--CCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC--CCHHH
Confidence 3567888899999999999999988653 255788999999999999999999999998754 4755 88776
No 224
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=88.61 E-value=5.5 Score=33.79 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 047392 129 FHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208 (258)
Q Consensus 129 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~ 208 (258)
+.+..+|.++-..+...|++++|...+++..+.+ | +...|..+=..+.-.|+.++|.+.|++-... .|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~--s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--M--SWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--C--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5678888888777777899999999999999875 4 7777777778889999999999999987764 48888773
No 225
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=87.84 E-value=11 Score=31.57 Aligned_cols=133 Identities=5% Similarity=-0.111 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhc-C-ChHHHHH
Q 047392 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGN-NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEE-G-LVNEALA 190 (258)
Q Consensus 114 ~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~-g-~~~~a~~ 190 (258)
+|+++++++... -+-+...|+.-=..+...| .+++++++++.+.....+ +...|+.--..+.+. + +.+++++
T Consensus 72 ~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK---ny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 72 RALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK---SYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC---CHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred HHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHhcCCChHHHHH
Confidence 789999988743 1234556776666666677 599999999999987522 566788888888777 7 8999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcC
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFN--------KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~--------~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g 255 (258)
+++.+.+.. +-|...|+----.+.+.|..+ ++.+.++++.+... -|...|+..-..+.+.|
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp---~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG---RNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHTTST
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcc
Confidence 999998643 456777766555555555555 99999999998763 46666666555544443
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=87.75 E-value=5.2 Score=29.26 Aligned_cols=87 Identities=15% Similarity=0.044 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGN---NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
+..+.+.|.+.... +. ++..+--.+--+++++. +++++..++++..+.. .|.-+...+-.|--+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~-~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHT-TC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 44556666665532 33 66666666778889988 5679999999998874 1211122233445566999999999
Q ss_pred HHHHHHHHhCCCCCC
Q 047392 189 LATFYRMKQFRCRPD 203 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~ 203 (258)
.+.++...+. .|+
T Consensus 91 ~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHHH--CTT
T ss_pred HHHHHHHHhc--CCC
Confidence 9999999873 474
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=87.28 E-value=4.5 Score=29.35 Aligned_cols=68 Identities=10% Similarity=0.045 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~ 201 (258)
+....+..++.+...|+-++-.+++.++... .+| +....-.+-.+|.+.|+..+|.+++.+.-+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~--~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEV--SASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCC--ChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4455678889999999999999999996443 334 5556788899999999999999999999888863
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=87.11 E-value=4.7 Score=26.48 Aligned_cols=67 Identities=6% Similarity=-0.069 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHccCC---hHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047392 130 HNEVTCKEMGIVFARGNN---VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g 199 (258)
.|...+..+-.++...++ .++|..++++..+..- -++.....+=..+.+.|++++|...|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp---~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP---YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 455666666677754444 6899999999888742 245566667788899999999999999998753
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.35 E-value=7 Score=36.48 Aligned_cols=38 Identities=13% Similarity=-0.020 Sum_probs=20.3
Q ss_pred HcCCHHHHHHHHHHhHhCCCCCCCC-HHHHHHHHHHHHHcCCC
Q 047392 216 RVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQ 257 (258)
Q Consensus 216 ~~g~~~~a~~~f~~M~~~~~~~~pd-~~ty~~li~~~~~~g~~ 257 (258)
..|+++.|.++-++-+.. .|+ ..||-.|..+|.+.|++
T Consensus 349 ~K~~~elAL~~Ak~AV~~----aPseF~tW~~La~vYi~l~d~ 387 (754)
T 4gns_B 349 NRGDYELALGVSNTSTEL----ALDSFESWYNLARCHIKKEEY 387 (754)
T ss_dssp HTTCHHHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCH
T ss_pred ccCcHHHHHHHHHHHHhc----CchhhHHHHHHHHHHHHhccH
Confidence 455555555555555542 243 44555555555555554
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=86.33 E-value=6.4 Score=27.81 Aligned_cols=84 Identities=10% Similarity=0.002 Sum_probs=52.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCH
Q 047392 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNE---ALATFYRMKQFRCRP--DVYAYNVVINALCRVGNF 220 (258)
Q Consensus 146 g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~---a~~l~~~M~~~g~~p--~~~ty~~li~~~~~~g~~ 220 (258)
..+..+.+-|.+-...|. ++..|--.+-.++.+..+... ++.++++....+ .| .....-.|--|+.|.|++
T Consensus 15 ~~l~~~~~~y~~e~~~~~---~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS---VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC---CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccCC---CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 334555666666555443 255455556667777776554 888888877653 23 222333444577888888
Q ss_pred HHHHHHHHHhHhC
Q 047392 221 NKARFLLEQMELP 233 (258)
Q Consensus 221 ~~a~~~f~~M~~~ 233 (258)
++|.+.++.+.+.
T Consensus 91 ~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 91 EKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888873
No 231
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=85.36 E-value=15 Score=30.54 Aligned_cols=127 Identities=10% Similarity=-0.043 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC-hHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGN--NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL-VNEA 188 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~-~~~a 188 (258)
+++++++++.+... -+-+..+|+----.+.+.| .++++.++++.+.+... -|-+.|+---..+.+.|. ++++
T Consensus 90 l~~EL~~~~~~L~~--~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp---rNy~AW~~R~~vl~~l~~~~~ee 164 (331)
T 3dss_A 90 VKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE---RNFHCWDYRRFVAAQAAVAPAEE 164 (331)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhCcCHHHH
Confidence 56888999888753 3356677776666666666 48899999999998852 277789988888889998 5999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRV--------------GNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~--------------g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
++.++++.+.. +-|...|+-.-..+.+. +.++++.+.+++.....- -|...|+.+
T Consensus 165 l~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P---~d~SaW~Y~ 233 (331)
T 3dss_A 165 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP---NDQSAWFYH 233 (331)
T ss_dssp HHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST---TCHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC---CCHHHHHHH
Confidence 99999998754 45777887776666655 458899999999987541 345556544
No 232
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=85.00 E-value=3.2 Score=38.31 Aligned_cols=30 Identities=10% Similarity=-0.058 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
+...|..|-..+.+.|+++.|.+.|.++..
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 445688888888888888888888887754
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=84.79 E-value=7.3 Score=31.93 Aligned_cols=122 Identities=6% Similarity=-0.048 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHhCc-cC-CCCccccccCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHcc-----CChHHHHH
Q 047392 84 KKEADNIANNVLVLGP-AA-YRNPQKVTLGINKATEFYHWVERFFHFFHN---EVTCKEMGIVFARG-----NNVKGLWD 153 (258)
Q Consensus 84 ~~~~~~~~~~~l~~g~-~~-~~~~~~~~~~~~~a~~~f~~m~~~~~~~p~---~~~y~~li~~~~~~-----g~~~~a~~ 153 (258)
.+.+..++|.....+. .. ...-.........|..++++..+ +.|+ ...|..|-..|.+. |+.++|.+
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 3345567777666543 22 12223344445666666666553 3466 66788888888884 89999999
Q ss_pred HHHHHHHcCCCCCcCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCC--CCHHHHHHH
Q 047392 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEE-GLVNEALATFYRMKQFRCR--PDVYAYNVV 210 (258)
Q Consensus 154 ~~~~m~~~g~~~~~~~~t~~~li~~~~~~-g~~~~a~~l~~~M~~~g~~--p~~~ty~~l 210 (258)
.|++-.+-+ |.-+..++...-..+++. |+.++|.+.+++.....-. |+....|.+
T Consensus 226 ~ferAL~Ln--P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 226 AFEHLTRYC--SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHC--CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHhC--CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 999988764 322344677778888885 8999999999998887655 665544443
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=84.23 E-value=11 Score=30.82 Aligned_cols=112 Identities=15% Similarity=0.044 Sum_probs=77.7
Q ss_pred HHHHHHHHH-HHHcc--CC------hHHHHHHHHHHHHcCCCCC-cCHHHHHHHHHHHHh-----cCChHHHHHHHHHHH
Q 047392 132 EVTCKEMGI-VFARG--NN------VKGLWDFLKEMSRRGNGEL-VTTSTVTCLIKVLGE-----EGLVNEALATFYRMK 196 (258)
Q Consensus 132 ~~~y~~li~-~~~~~--g~------~~~a~~~~~~m~~~g~~~~-~~~~t~~~li~~~~~-----~g~~~~a~~l~~~M~ 196 (258)
...|..++. ++... |. ..+|...+++..+-. |. .+-..|+.|-..|.+ .|+.++|.+.|++-.
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL 231 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT 231 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH
Confidence 456666655 34443 33 345666666665542 31 124468888888999 599999999999998
Q ss_pred hCCCCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHhHhCCCCCCCCHHHHHHH
Q 047392 197 QFRCRP--DVYAYNVVINALCRV-GNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (258)
Q Consensus 197 ~~g~~p--~~~ty~~li~~~~~~-g~~~~a~~~f~~M~~~~~~~~pd~~ty~~l 247 (258)
+. .| +..++...-..+|+. |+.+++.+.+++-........|+....+.+
T Consensus 232 ~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 232 RY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred Hh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 84 36 377777888889985 999999999999998762211665555544
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=83.84 E-value=12 Score=28.13 Aligned_cols=74 Identities=15% Similarity=0.091 Sum_probs=54.1
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047392 143 ARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222 (258)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~ 222 (258)
.+.|+++.|.++.+++ + +...|..|=+.....|+++-|.+.|..... |..+.--|.-.|+.+.
T Consensus 16 L~lg~l~~A~e~a~~l---~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL---N-----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHTTCHHHHHHHHHHH---C-----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HhcCCHHHHHHHHHHh---C-----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 4689999999998876 1 566899999999999999999999999875 4445555555666655
Q ss_pred HHHHHHHhHhC
Q 047392 223 ARFLLEQMELP 233 (258)
Q Consensus 223 a~~~f~~M~~~ 233 (258)
-..+-+.-...
T Consensus 79 L~kla~iA~~~ 89 (177)
T 3mkq_B 79 LSKMQNIAQTR 89 (177)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 55444433333
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=83.50 E-value=11 Score=27.63 Aligned_cols=115 Identities=10% Similarity=0.017 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHccCCh------HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH------HhcCChHHHHHHHHHHHhC
Q 047392 131 NEVTCKEMGIVFARGNNV------KGLWDFLKEMSRRGNGELVTTSTVTCLIKVL------GEEGLVNEALATFYRMKQF 198 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~------~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~------~~~g~~~~a~~l~~~M~~~ 198 (258)
|..+|=..+.-+-+.|+. ++..++|++-... ++|.. ...|..-|..+ -..+++++|.++|+.+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k-~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDK-YGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGG-GTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccc-cccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444555566666666777 7777888877765 55532 11122211111 2227999999999999765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHH
Q 047392 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251 (258)
Q Consensus 199 g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~ 251 (258)
+-.. ...|-..-+-=.+.|++..|.+++.+-...+- +| .....+.|..+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~--k~-~~~le~a~~nl 138 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA--VP-LEMLEIALRNL 138 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--BC-HHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC--Cc-HHHHHHHHHhh
Confidence 3333 66665555556689999999999999998763 24 44556555544
No 237
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.22 E-value=8.7 Score=26.09 Aligned_cols=36 Identities=8% Similarity=0.057 Sum_probs=21.0
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 047392 126 FHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRR 161 (258)
Q Consensus 126 ~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 161 (258)
+.+.|+.....+.+.+|-|.+++..|.++|+-.+.+
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666555544
No 238
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.87 E-value=25 Score=26.99 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHH---HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 112 INKATEFYHWVERFFHFFHNEV---TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~---~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
++.+.+.|.... .++-|.- .|-..+..+ .++...++.++|..|...|++-... .-|..--..+-..|++.+|
T Consensus 60 LErc~~~F~~~~---rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~A-lfYe~wA~~lE~~g~~~~A 134 (202)
T 3esl_A 60 MERCLIYIQDME---TYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLS-LFYEEFSKLLENAQFFLEA 134 (202)
T ss_dssp HHHHHHHHTTCG---GGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBH-HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcccc---cccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHH-HHHHHHHHHHHHcCCHHHH
Confidence 445555555443 2333432 222233333 2444668999999999998876443 4688888888999999999
Q ss_pred HHHHHHHHhCCCCCC
Q 047392 189 LATFYRMKQFRCRPD 203 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~ 203 (258)
.+||+.=.+.+-.|-
T Consensus 135 ~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 135 KVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHcCCccH
Confidence 999999998887884
No 239
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.03 E-value=16 Score=26.28 Aligned_cols=30 Identities=7% Similarity=0.058 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047392 168 TTSTVTCLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 168 ~~~t~~~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
+..+..+.+.+|-+..|+.-|.++|+-.+.
T Consensus 87 eP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 87 EPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444566666666666666666666665553
No 240
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=71.17 E-value=43 Score=27.70 Aligned_cols=131 Identities=8% Similarity=-0.040 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhhCCCCCC-HHHHHH---HHHHHHccC-------ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh
Q 047392 113 NKATEFYHWVERFFHFFHN-EVTCKE---MGIVFARGN-------NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE 181 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~-~~~y~~---li~~~~~~g-------~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~ 181 (258)
++|+++++.+.. +.|+ ...||. ++..+.+.. .++++..+++.+..... -+..+|+.--..+.+
T Consensus 47 ~eaL~~t~~~L~---~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P---Kny~aW~hR~wlL~~ 120 (331)
T 3dss_A 47 ESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP---KSYGTWHHRCWLLSR 120 (331)
T ss_dssp HHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHhc
Confidence 488999999873 2344 344554 333333221 16789999999988742 266789988888888
Q ss_pred cCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHH
Q 047392 182 EGL--VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN-FNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (258)
Q Consensus 182 ~g~--~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~-~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~ 253 (258)
.|+ +++++++++.|.+.. +-|...|+----.+.+.|. ++++.+.++++..... -|...|+..-..+.+
T Consensus 121 l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p---~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 121 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF---SNYSSWHYRSCLLPQ 191 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHH
Confidence 884 899999999998743 4577888877777778888 6999999999998764 466666655544443
No 241
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.48 E-value=50 Score=28.22 Aligned_cols=98 Identities=10% Similarity=-0.057 Sum_probs=72.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHH----H
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ---FRCRPDVY----A 206 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~---~g~~p~~~----t 206 (258)
++..+-.-|.+.|++++|.+.|.++.+.-..+.--...+-.+|..+...+++..|.....+... .+-.|+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5677889999999999999999999887444433445688889999999999999999999764 33233322 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHhC
Q 047392 207 YNVVINALCRVGNFNKARFLLEQMELP 233 (258)
Q Consensus 207 y~~li~~~~~~g~~~~a~~~f~~M~~~ 233 (258)
|..++ +...+++.+|...|-+....
T Consensus 213 ~~gl~--~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIH--CLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHG--GGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHhChHHHHHHHHHHHhcc
Confidence 22222 23468899999999887653
No 242
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.91 E-value=18 Score=29.16 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=14.2
Q ss_pred HHHHHHHH--HcCCHHHHHHHHHHhHh
Q 047392 208 NVVINALC--RVGNFNKARFLLEQMEL 232 (258)
Q Consensus 208 ~~li~~~~--~~g~~~~a~~~f~~M~~ 232 (258)
..|+.+.. ..|+.++|.++-++..+
T Consensus 102 ~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 102 KSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 33444433 35777777777666643
No 243
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=68.25 E-value=25 Score=23.81 Aligned_cols=88 Identities=15% Similarity=0.076 Sum_probs=64.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047392 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225 (258)
Q Consensus 146 g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 225 (258)
...++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+ +.||.+.|-+|-. .|.|..+.+..
T Consensus 20 H~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ----DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHH
Confidence 346788888888877752 3333334456678899999999887766 4799999866633 48899999999
Q ss_pred HHHHhHhCCCCCCCCHHHHHH
Q 047392 226 LLEQMELPGFRCPPDVYTYTI 246 (258)
Q Consensus 226 ~f~~M~~~~~~~~pd~~ty~~ 246 (258)
.+.+|..+|- |....|..
T Consensus 90 rL~~la~sg~---p~~q~Fa~ 107 (115)
T 2uwj_G 90 RLAGLGGSSD---PALADFAA 107 (115)
T ss_dssp HHHHHHTCSS---HHHHHHHH
T ss_pred HHHHHHhCCC---HHHHHHHH
Confidence 9999998873 65555543
No 244
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=68.01 E-value=24 Score=24.80 Aligned_cols=66 Identities=11% Similarity=0.024 Sum_probs=47.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCC
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL--VNEALATFYRMKQFRCRP 202 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~--~~~a~~l~~~M~~~g~~p 202 (258)
..+.+|.-|...|+.++|.+.++++....+ -..+++.++..++=+.++ -+.+..++..+...|+-+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f---~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF---HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG---HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc---HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 357888999999999999999999853322 245567777777777643 467788888887766433
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=67.50 E-value=26 Score=23.75 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=64.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047392 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225 (258)
Q Consensus 146 g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 225 (258)
...++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+- .||.+.|-+|-. .|.|..+.+..
T Consensus 21 H~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE----EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 346788888888877762 33333344566788999999999887764 799999876633 47899999999
Q ss_pred HHHHhHhCCCCCCCCHHHHHH
Q 047392 226 LLEQMELPGFRCPPDVYTYTI 246 (258)
Q Consensus 226 ~f~~M~~~~~~~~pd~~ty~~ 246 (258)
.+.+|..+|- |....|..
T Consensus 91 rL~~la~sg~---p~~q~Fa~ 108 (116)
T 2p58_C 91 RLNRLARSQD---PRIQTFVN 108 (116)
T ss_dssp HHHHHTTCCC---HHHHHHHH
T ss_pred HHHHHHhCCC---HHHHHHHH
Confidence 9999988773 65555543
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=66.30 E-value=1e+02 Score=30.13 Aligned_cols=115 Identities=15% Similarity=0.094 Sum_probs=81.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCC---------------------CcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRGNGE---------------------LVTTSTVTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g~~~---------------------~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
+-.++...|++++|.+.|.+-.. |+.. ..-..=|.-++..|-+.|..+.+.++-..-.
T Consensus 848 ~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi 926 (1139)
T 4fhn_B 848 KALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLAD 926 (1139)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33456689999999999966321 1111 0011236778888999999999888776655
Q ss_pred hC-C-CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 197 QF-R-CRPDV--YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 197 ~~-g-~~p~~--~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
+. + -.++. ..|..++.++...|++++|....-.+..... -......||..+|..|.+
T Consensus 927 ~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~----r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 927 ASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL----KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS----CHHHHHHHHHHHHHHCCH
T ss_pred HhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH----HHHHHHHHHHHHHhCCCh
Confidence 42 1 11222 2589999999999999999999999987663 356788899999988764
No 247
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=64.64 E-value=20 Score=28.83 Aligned_cols=72 Identities=13% Similarity=0.106 Sum_probs=51.3
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 047392 139 GIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF--RCRPDVYAYNVVINA 213 (258)
Q Consensus 139 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~--g~~p~~~ty~~li~~ 213 (258)
+..+.+.|.++++.+-..+-++.. ..|...-..|+.-+|-.|++++|.+=++-..+. ...|...+|..+|.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~---P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 345678899999988888877764 237777888999999999999999888877653 223334455555443
No 248
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=64.32 E-value=34 Score=23.95 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 172 VTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 172 ~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
.+.+|.-|...|+.++|.+.++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3455555555666666666666654
No 249
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=62.54 E-value=11 Score=28.55 Aligned_cols=17 Identities=12% Similarity=-0.156 Sum_probs=7.5
Q ss_pred HHHhcCChHHHHHHHHH
Q 047392 178 VLGEEGLVNEALATFYR 194 (258)
Q Consensus 178 ~~~~~g~~~~a~~l~~~ 194 (258)
..+..|+.+-+..+++.
T Consensus 85 ~A~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDS 101 (241)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 33445555444444433
No 250
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=61.99 E-value=54 Score=30.56 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=44.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 179 LGEEGLVNEALATFYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 179 ~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
+...|+++-|+++-++-.. +.|+ -.||-.|..+|.+.|+++.|+-.++-|.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 5568999999999999765 3454 7899999999999999999999999885
No 251
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=60.09 E-value=21 Score=25.89 Aligned_cols=65 Identities=11% Similarity=0.024 Sum_probs=46.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCC
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL--VNEALATFYRMKQFRCR 201 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~--~~~a~~l~~~M~~~g~~ 201 (258)
..+.+|.-|...|+.++|.+.++++....+ ...+++.++..++=+.++ -+.+..++..+...|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f---~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF---HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG---HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc---hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 357889999999999999999999853322 245567777777776533 45677888888776543
No 252
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=59.69 E-value=32 Score=24.96 Aligned_cols=51 Identities=24% Similarity=0.337 Sum_probs=21.8
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCC--hHHHHHHHHHHHHcC
Q 047392 110 LGINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNN--VKGLWDFLKEMSRRG 162 (258)
Q Consensus 110 ~~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~--~~~a~~~~~~m~~~g 162 (258)
.+.++|.+.++++... .+ .....+.++..++=+.+. .+.+..++..+...|
T Consensus 23 ~D~~EA~~cl~EL~~p-~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~ 75 (152)
T 2ion_A 23 GDISEAEHCLKELEVP-HF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 75 (152)
T ss_dssp CCHHHHHHHHHHHTCG-GG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCCC-cc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 3455555555555310 01 123334444444444322 234555555555444
No 253
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=57.15 E-value=38 Score=24.95 Aligned_cols=54 Identities=15% Similarity=0.067 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 047392 150 GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204 (258)
Q Consensus 150 ~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~ 204 (258)
.+.++|..|...|++-... .-|-.--..+-..|++.+|.+||+.=.+.+-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~A-lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLA-QFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 3677888888887765433 35777777777788888888888888877777754
No 254
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.10 E-value=58 Score=23.65 Aligned_cols=51 Identities=24% Similarity=0.287 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 047392 151 LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202 (258)
Q Consensus 151 a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p 202 (258)
+.++|..|...|++-... .-|..--..+-..|++.+|.+||+.=.+.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~A-lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSS-PLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455555555555443222 234444444555555555555555555444444
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.37 E-value=42 Score=28.72 Aligned_cols=85 Identities=13% Similarity=0.042 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047392 148 VKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF--RCRPDVYAYNVVINALCRVGNFNKARF 225 (258)
Q Consensus 148 ~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~--g~~p~~~ty~~li~~~~~~g~~~~a~~ 225 (258)
+++..+...+..+....-.--..+...+-+-|.+.|+.++|.+.|.++... +..--...|-.+|..+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 344444555554433221101114678999999999999999999999873 333345667888999999999999999
Q ss_pred HHHHhHh
Q 047392 226 LLEQMEL 232 (258)
Q Consensus 226 ~f~~M~~ 232 (258)
..++...
T Consensus 190 ~~~ka~~ 196 (429)
T 4b4t_R 190 KLEAVNS 196 (429)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988753
No 256
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=54.14 E-value=37 Score=21.18 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=20.0
Q ss_pred HHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 047392 173 TCLIKVLGEEG-LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218 (258)
Q Consensus 173 ~~li~~~~~~g-~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g 218 (258)
-.++..+...+ ..-.+.+|++.+.+.+...+..|-.-.+..+.+.|
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444332 33344455555544433334444444444444444
No 257
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=53.10 E-value=58 Score=23.08 Aligned_cols=46 Identities=9% Similarity=-0.029 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 047392 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218 (258)
Q Consensus 173 ~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g 218 (258)
-.++..+...+..-.|.+|++.+++.+-..+..|----++.+...|
T Consensus 25 ~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 25 HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3444444444444445555555554443344444333444444444
No 258
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=52.52 E-value=39 Score=24.23 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=24.0
Q ss_pred hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC
Q 047392 125 FFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL 184 (258)
Q Consensus 125 ~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~ 184 (258)
..|++++..- -.++..+...+..-.|.++++.+++.+... +..|----|+.+...|-
T Consensus 20 ~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i--s~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 20 KNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNT--SISSVYRILNFLEKENF 76 (150)
T ss_dssp HCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTC--CHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCC--CHhhHHHHHHHHHHCCc
Confidence 4444433322 234444444444444555665555554222 33333333444444443
No 259
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=52.27 E-value=60 Score=23.02 Aligned_cols=23 Identities=9% Similarity=0.234 Sum_probs=10.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHh
Q 047392 210 VINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 210 li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
|--|+.|.|+.+.|.++.+.+.+
T Consensus 84 LAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33444444455555444444444
No 260
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=51.58 E-value=59 Score=22.72 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=30.6
Q ss_pred hCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChH
Q 047392 125 FFHFFHNEVTCKEMGIVFARGN-NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186 (258)
Q Consensus 125 ~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~ 186 (258)
+.|++++..-. .++..+...+ ..-.|.++++.+++.+... +..|----|+.+...|-+.
T Consensus 11 ~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i--s~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 11 KAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDV--GLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHTSEE
T ss_pred HCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCC--CHHHHHHHHHHHHHCCcEE
Confidence 44555554433 3455555554 4555777777776665333 4444444455555555443
No 261
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=51.01 E-value=68 Score=23.30 Aligned_cols=71 Identities=11% Similarity=0.012 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCCcCHHHHHHHHHHHHhcCChH
Q 047392 113 NKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRR--GNGELVTTSTVTCLIKVLGEEGLVN 186 (258)
Q Consensus 113 ~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~t~~~li~~~~~~g~~~ 186 (258)
+.+++-+.+..+..|++.+..- ..++..+...+..-.|.++++.+.+. +... +..|----|+.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~i--s~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNV--GIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCC--CHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHCCCEE
Confidence 4566666666656677776543 44667777777777789999988877 5333 5555555567777777543
No 262
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=49.07 E-value=40 Score=24.71 Aligned_cols=62 Identities=6% Similarity=0.027 Sum_probs=44.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 146 g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
+++++|.++|+.+.+.+-.. ...|-.--.-=.+.|++.+|.+++..-...|-.|. ....+.|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~ 135 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIAL 135 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHH
Confidence 78889999999987763222 55666666667888999999999999888765443 3333333
No 263
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=48.06 E-value=61 Score=25.14 Aligned_cols=12 Identities=8% Similarity=-0.067 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHH
Q 047392 185 VNEALATFYRMK 196 (258)
Q Consensus 185 ~~~a~~l~~~M~ 196 (258)
.++...+|+.+.
T Consensus 164 ~~~l~~~F~~~D 175 (256)
T 2jul_A 164 HEKLKWAFNLYD 175 (256)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC
Confidence 344444454443
No 264
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=48.01 E-value=34 Score=26.66 Aligned_cols=53 Identities=11% Similarity=0.194 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 047392 149 KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202 (258)
Q Consensus 149 ~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p 202 (258)
+.+.++|..|...|++-... .-|..--..+-..|++.+|.+||+.=.+.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~A-lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESS-IFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45667777777777765333 356677777777788888888887777766666
No 265
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=47.77 E-value=44 Score=21.99 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047392 153 DFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226 (258)
Q Consensus 153 ~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~ 226 (258)
.+++.+.+.|+- +..-...+-. .....+.++|.++++.....| ...|..++.++...|...-|..+
T Consensus 25 ~vld~L~~~~vl---t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 25 QLWDVLLSRELF---RPHMIEDIQR-AGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp TTHHHHHHTTSS---CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHcCCC---CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHHHH
Confidence 467777777632 3222222221 101246778888888777654 45677788887766665555433
No 266
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=46.29 E-value=76 Score=22.44 Aligned_cols=63 Identities=13% Similarity=0.010 Sum_probs=46.1
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCC
Q 047392 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 192 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~ 257 (258)
-+.|++.|++++..=. .++..+...+..-.|.++++.+.+.+.. .+..|----|+.+...|-+
T Consensus 10 ~~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~--is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 10 LETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPN--MSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTT--CCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCC--CChhhHHHHHHHHHHCCCE
Confidence 3457788988887654 5667777777777899999999887744 6777766666777777643
No 267
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=45.40 E-value=83 Score=22.65 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 184 LVNEALATFYRMKQF----RCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 184 ~~~~a~~l~~~M~~~----g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
+++.+......+|.. |. ........-|..+|+.|+.+.+..++.++..
T Consensus 70 D~~~l~~~aH~LKGss~~lGa-~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ 121 (153)
T 3us6_A 70 DFKKVDAHVHQFKGSSASIGA-QRVKNSCVAFRNFCEEQNIDACRRCLQQVKQ 121 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777752 32 1223345556778899999999888888874
No 268
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=44.59 E-value=67 Score=22.76 Aligned_cols=35 Identities=9% Similarity=-0.142 Sum_probs=14.7
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 047392 126 FHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRG 162 (258)
Q Consensus 126 ~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 162 (258)
.|++++..-- .++..+...+ .-.|.++++.+++.+
T Consensus 13 ~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~ 47 (145)
T 3eyy_A 13 RGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTA 47 (145)
T ss_dssp TTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTC
T ss_pred cCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhC
Confidence 3444433322 2333444333 334555555554443
No 269
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=43.39 E-value=80 Score=22.51 Aligned_cols=58 Identities=12% Similarity=0.062 Sum_probs=28.1
Q ss_pred hCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCCh
Q 047392 125 FFHFFHNEVTCKEMGIVFARGN-NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLV 185 (258)
Q Consensus 125 ~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~ 185 (258)
..|++++..-. .++..+...+ ..-.|.++++.+.+.+... +..|----|+.+...|-+
T Consensus 10 ~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i--s~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 10 DAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEI--GLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHTTSE
T ss_pred HcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHCCcE
Confidence 34555544333 2444554444 4445666666666654322 444444444555555543
No 270
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=43.36 E-value=71 Score=22.29 Aligned_cols=62 Identities=11% Similarity=0.069 Sum_probs=35.0
Q ss_pred HHHHHcCCCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 047392 156 KEMSRRGNGELVTTSTVTCLIKVLGEEG-LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220 (258)
Q Consensus 156 ~~m~~~g~~~~~~~~t~~~li~~~~~~g-~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~ 220 (258)
+.|++.|..+ +. .--.++..+...+ ..-.|.+|++.+++.+-..+..|----++.+...|-+
T Consensus 7 ~~l~~~g~r~--T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 7 SELRKAGLKV--TL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHHTTCCC--CH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHCCCCC--CH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3455666655 32 3455566666555 5556777777777665555555555555555555543
No 271
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=42.73 E-value=43 Score=19.98 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=12.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCC
Q 047392 182 EGLVNEALATFYRMKQFRCRPD 203 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g~~p~ 203 (258)
.|+++.|...+-+|...+..|+
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCC
Confidence 4556666666666655444443
No 272
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=40.93 E-value=63 Score=20.03 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcC
Q 047392 126 FHFFHNEVTCKEMGIVFARGN-NVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG 183 (258)
Q Consensus 126 ~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g 183 (258)
.|+..+..- -.++..+...+ ..-.+.++++.+.+.+... +..|-.-.|+.+...|
T Consensus 11 ~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i--s~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 11 AGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEI--GLATVYRVLNQFDDAG 66 (83)
T ss_dssp TTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHT
T ss_pred cCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC--CHhhHHHHHHHHHHCC
Confidence 344444433 23444444432 3333555555555543222 4444444444444444
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=40.66 E-value=83 Score=21.30 Aligned_cols=59 Identities=14% Similarity=0.076 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHH
Q 047392 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (258)
Q Consensus 184 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~ 250 (258)
..++|.-|-+-....|. ....--+=+..+...|++++|..+.+.+. .||...|-+|-..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c------~pdlepw~ALce~ 80 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA------YPDLEPWLALCEY 80 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC------CGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC------CchHHHHHHHHHH
Confidence 46677777777776543 22211223456789999999999887665 3999999887543
No 274
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.49 E-value=1.3e+02 Score=23.44 Aligned_cols=90 Identities=10% Similarity=-0.038 Sum_probs=49.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHc--CCCCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRR--GNGELV--TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~--~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~ 213 (258)
-|..+....++++|.+++++.++. +..... +...-...|..=.....-.-+..+.+++.. .++...-...+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 456677777888887777765543 111100 000122223333333333344455555533 4556666777788
Q ss_pred HHHcCCHHHHHHHHHHh
Q 047392 214 LCRVGNFNKARFLLEQM 230 (258)
Q Consensus 214 ~~~~g~~~~a~~~f~~M 230 (258)
+.+.|+-++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 88888888888887554
No 275
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=39.99 E-value=99 Score=22.00 Aligned_cols=41 Identities=10% Similarity=0.167 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047392 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228 (258)
Q Consensus 186 ~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~ 228 (258)
+++.++|.++...| -..++|.-++..+.+...+-++...|+
T Consensus 140 ~~~~~~f~~~D~d~--dG~i~~~Ef~~~~~~~~~~~~~l~~~d 180 (183)
T 1s6c_A 140 QHVDVFFQKMDKNK--DGIVTLDEFLESXQEDDNIMRSLQLFQ 180 (183)
T ss_dssp HHHHHHHHHHCTTC--SSEECHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC--CCcEeHHHHHHHHhcChHHHHHHHHhh
Confidence 44555555554332 123445555555544444444444444
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.98 E-value=1.1e+02 Score=25.61 Aligned_cols=68 Identities=10% Similarity=-0.009 Sum_probs=47.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL--VNEALATFYRMKQFRCRPDV 204 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~--~~~a~~l~~~M~~~g~~p~~ 204 (258)
..+.+|.-|...|+.++|.+.++++....+ -..+++.++..++=+.++ .+.+.+++..+...|+-+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~f---hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHF---HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTC---HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcc---hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 357788888889999999999998854322 135567777777766543 45688888888876654443
No 277
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=39.30 E-value=1.1e+02 Score=23.29 Aligned_cols=58 Identities=22% Similarity=0.127 Sum_probs=45.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCH
Q 047392 182 EGLVNEALATFYRMKQFRCRPDVY-AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~~g~~p~~~-ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~ 241 (258)
++...++.++|..|...|+--... -|-..-..+...|++.+|.++|+.=++.+-. |-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~--P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR--PYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB--SHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--cHH
Confidence 444779999999999988755543 3566667777899999999999998888744 743
No 278
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=38.65 E-value=62 Score=19.77 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g 218 (258)
-++-+++.++...-+++++..+++..+.| ..+..+|---+..+++..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 36677777777777777777777777766 466666766666666543
No 279
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=38.50 E-value=72 Score=26.74 Aligned_cols=64 Identities=17% Similarity=0.172 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHhHhCCC
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN--FNKARFLLEQMELPGF 235 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~--~~~a~~~f~~M~~~~~ 235 (258)
..+.+|.=|...|+.++|.+.++++..-.+.+ ...+.++..++=+.++ .+.+.+++..+...|+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 36889999999999999999999997533322 3445566666655443 4568888888887775
No 280
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=38.11 E-value=1.1e+02 Score=21.96 Aligned_cols=71 Identities=8% Similarity=-0.054 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 047392 129 FHNEVTCKEMGIVFARGNNV---KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203 (258)
Q Consensus 129 ~p~~~~y~~li~~~~~~g~~---~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~ 203 (258)
.|+..+-=.+--++.++... .++..+++++.+.+ |.-.-...--|--|+.|.|++++|.+..+.+.+. .|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 45554444455566666654 35777777777654 2111112333455677788888888877777763 454
No 281
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.05 E-value=1.1e+02 Score=22.08 Aligned_cols=69 Identities=16% Similarity=0.091 Sum_probs=46.6
Q ss_pred HHHHHHH-HHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCH
Q 047392 149 KGLWDFL-KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF--RCRPDVYAYNVVINALCRVGNF 220 (258)
Q Consensus 149 ~~a~~~~-~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~--g~~p~~~ty~~li~~~~~~g~~ 220 (258)
+.+.+-+ +.+++.|... +. --..++..+...++.-.|.+|++.+++. +-..+..|----|+.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~--T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKY--TK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCC--CH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCC--CH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3334333 3456678776 33 3567778888877788899999999876 6566766655666777777754
No 282
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=36.94 E-value=1.8 Score=38.38 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047392 130 HNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209 (258)
Q Consensus 130 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 209 (258)
-|...|..+|....++|++++-...+.--++..-.|..| +.||.+|+|.++..+..+++. .||+.-...
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID----teLi~ayAk~~rL~elEefl~-------~~N~A~iq~ 149 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE----TELIFALAKTNRLAELEEFIN-------GPNNAHIQQ 149 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT----HHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH----HHHHHHHHhhCcHHHHHHHHc-------CCCcccHHH
Confidence 355668899999999999998888776555555556555 899999999999765433322 366655556
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhCCC------------------CCCCCHHHHHHHHHHHHHcCCC
Q 047392 210 VINALCRVGNFNKARFLLEQMELPGF------------------RCPPDVYTYTILISSYCKYGMQ 257 (258)
Q Consensus 210 li~~~~~~g~~~~a~~~f~~M~~~~~------------------~~~pd~~ty~~li~~~~~~g~~ 257 (258)
+=+-|...|..+.|.-+|..+-.... .=.-+..||.-+-.+|...+++
T Consensus 150 VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~Ef 215 (624)
T 3lvg_A 150 VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEF 215 (624)
T ss_dssp HHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTT
T ss_pred HHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHH
Confidence 66777777777777777665532210 0014556898888888887765
No 283
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=36.93 E-value=1.2e+02 Score=22.89 Aligned_cols=95 Identities=14% Similarity=0.114 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHhC
Q 047392 131 NEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGE------------EGLVNEALATFYRMKQF 198 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~------------~g~~~~a~~l~~~M~~~ 198 (258)
+..-|..++..+.+...-+....+|+.+-..|-+ ..+..-+..++..+.. .-.-+.+.++|.++...
T Consensus 120 ~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG-~Is~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d 198 (229)
T 3dd4_A 120 SFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDG-YITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKN 198 (229)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHCTTCSS-CCBHHHHHHHHHHHHHHCC-----------CCTHHHHHHHHHCSS
T ss_pred eHHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCC-eECHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHHHhcCC
Confidence 3333444444444333334455556555333321 2243344444444321 11235666677777543
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047392 199 RCRPDVYAYNVVINALCRVGNFNKARFLLE 228 (258)
Q Consensus 199 g~~p~~~ty~~li~~~~~~g~~~~a~~~f~ 228 (258)
| -..++|.-++..+.+...+-.+.+.|+
T Consensus 199 ~--dG~Is~~EF~~~~~~~~~~~~~~~~~D 226 (229)
T 3dd4_A 199 K--DGVVTIDEFIESCQKDENIMRSMQLFE 226 (229)
T ss_dssp C--SSBCCHHHHHHHHHTCHHHHHHHHHHT
T ss_pred C--CCcEeHHHHHHHHHhCHHHHHHHHhcc
Confidence 3 233556666666655544444444443
No 284
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=36.76 E-value=32 Score=24.22 Aligned_cols=82 Identities=12% Similarity=0.028 Sum_probs=41.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHH
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELV-TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY--NVVINAL 214 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty--~~li~~~ 214 (258)
.+...++.|+.+-+ +.+.+.|..+.. |. .-.+.+...+..|+.+-+..++ +.|..++.... .+.+...
T Consensus 45 ~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A 115 (165)
T 3twr_A 45 PLHFAAGYNRVSVV----EYLLQHGADVHAKDK-GGLVPLHNACSYGHYEVAELLV----KHGAVVNVADLWKFTPLHEA 115 (165)
T ss_dssp HHHHHHHTTCHHHH----HHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHcChHHHH----HHHHhcCCCCCccCC-CCCCHHHHHHHcCcHHHHHHHH----hCCCCCCCcCCCCCCHHHHH
Confidence 44445566776543 444455654421 21 1223445556777776544444 45555543221 2345666
Q ss_pred HHcCCHHHHHHHHH
Q 047392 215 CRVGNFNKARFLLE 228 (258)
Q Consensus 215 ~~~g~~~~a~~~f~ 228 (258)
++.|+.+-+..+++
T Consensus 116 ~~~~~~~~v~~Ll~ 129 (165)
T 3twr_A 116 AAKGKYEICKLLLQ 129 (165)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 77787775555553
No 285
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=36.51 E-value=69 Score=21.03 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=31.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 047392 146 NNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALAT 191 (258)
Q Consensus 146 g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l 191 (258)
...++|.++++.+..+| | + .|...++++...|+.+-|..+
T Consensus 51 t~~~~ar~Lld~L~~rG--~--~--Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG--S--Q--ALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp CHHHHHHHHHHHHTTSC--T--T--HHHHHHHHHHTTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcC--h--H--HHHHHHHHHHHcCcHHHHHHH
Confidence 56888999999998876 3 4 499999999877876666544
No 286
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=36.33 E-value=47 Score=21.32 Aligned_cols=37 Identities=3% Similarity=-0.267 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCh
Q 047392 111 GINKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNV 148 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~ 148 (258)
..++|.+.|.+|....++.|+ .+|...|..++...++
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~~DpRY 51 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAF-STWEKELHKIVFDPRY 51 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHHTCSGG
T ss_pred CHHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCCcc
Confidence 467899999999988888765 4788777776655554
No 287
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=36.20 E-value=87 Score=22.32 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=33.7
Q ss_pred HHHHHcCCCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 047392 156 KEMSRRGNGELVTTSTVTCLIKVLGEEG-LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220 (258)
Q Consensus 156 ~~m~~~g~~~~~~~~t~~~li~~~~~~g-~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~ 220 (258)
+.|++.|+.+ +. .--.++..+...+ ..-.|.+|++.+++.+-..+..|----|+.+...|-+
T Consensus 6 ~~l~~~g~r~--T~-qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKV--TL-PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCC--CH-HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCC--CH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4455666655 32 2344555555444 4556777777776665555555544455555555543
No 288
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=35.95 E-value=1.1e+02 Score=21.54 Aligned_cols=60 Identities=8% Similarity=0.091 Sum_probs=29.0
Q ss_pred HHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047392 156 KEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (258)
Q Consensus 156 ~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 219 (258)
+.+++.|+.+ +. --..++..+...+ .-.|.+|++++++.+-..+..|----|+.+...|-
T Consensus 8 ~~L~~~g~r~--T~-qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 8 SDLRQRGYRL--TP-QRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHTTTCCC--CH-HHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCc--CH-HHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3344555554 22 2344444444444 44566666666655544455444444444444443
No 289
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.62 E-value=1.2e+02 Score=21.49 Aligned_cols=64 Identities=11% Similarity=0.045 Sum_probs=46.1
Q ss_pred HHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 047392 154 FLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220 (258)
Q Consensus 154 ~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~ 220 (258)
+-+.|++.|..+.+ ---.++..+...+..-.|.+|++.+++.+-..+..|----|+.+...|-+
T Consensus 14 ~~~~l~~~g~r~T~---qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 14 LRMSIKKNGLKNSK---QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHCC--CHH---HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCH---HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 33456778877622 45677788877777888999999998877667777777777888887754
No 290
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.18 E-value=2.2e+02 Score=24.32 Aligned_cols=97 Identities=10% Similarity=0.074 Sum_probs=65.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCcC---HHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCH--HH
Q 047392 136 KEMGIVFARGNNVKGLWDFLKEMSRRGNGELVT---TSTVTCLIKVLGEEGLVNEALATFYRMKQ----FRCRPDV--YA 206 (258)
Q Consensus 136 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~t~~~li~~~~~~g~~~~a~~l~~~M~~----~g~~p~~--~t 206 (258)
..|...+-..|++.+|.+++.++...-.+.... +..|.--+..|...+++.+|..++.+... ....|+. .-
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 346667778899999998888876542222111 23567778888888999999988888642 2233332 34
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 207 YNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 207 y~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
|..++..+...+++.+|...|.+.-.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 56667777778888888877777743
No 291
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=33.76 E-value=81 Score=21.33 Aligned_cols=58 Identities=19% Similarity=0.165 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHH
Q 047392 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (258)
Q Consensus 184 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~ 249 (258)
..++|.-|-+-....|. ....--+=+..+...|++++|..+.+.+. .||...|-+|-.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c------~pdlepw~ALce 78 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP------WPALEPWFALCE 78 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC------CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC------CchHHHHHHHHH
Confidence 46677777777776543 11211223456789999999998876654 499999987754
No 292
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=33.74 E-value=3.1e+02 Score=25.96 Aligned_cols=109 Identities=10% Similarity=-0.145 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 112 INKATEFYHWVERFF---HFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~---~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
.+.|.+.|+...... .+.||.. +.+...-.+.|.-++-..+++..+... +..--..++.+++-..+.+..
T Consensus 705 ~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~-----~~~ek~~ll~aL~~~~d~~~l 777 (909)
T 4fke_A 705 ENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ-----LVNEADKLRSALACSNEVWLL 777 (909)
T ss_dssp HHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC-----SHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC-----CHHHHHHHHHHhCCCCCHHHH
Confidence 567888888765321 2566643 223333345677777777777777664 444567889999988898888
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 047392 189 LATFYRMKQFR-CRPDVYAYNVVINALCRVGN-FNKARFLLEQ 229 (258)
Q Consensus 189 ~~l~~~M~~~g-~~p~~~ty~~li~~~~~~g~-~~~a~~~f~~ 229 (258)
.++++...... +++. .. ..++.+.+.... .+.|++.+.+
T Consensus 778 ~~~L~~~l~~~~ir~q-d~-~~~~~~v~~n~~g~~~~~~f~~~ 818 (909)
T 4fke_A 778 NRYLGYTLNPDLIRKQ-DA-TSTINSIASNVIGQPLAWDFVQS 818 (909)
T ss_dssp HHHHHHTTCTTTSCGG-GH-HHHHHHHHHSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCchh-hH-HHHHHHHhcChHHHHHHHHHHHH
Confidence 88888876533 3332 22 234445544322 3445555543
No 293
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=32.05 E-value=2.4e+02 Score=27.45 Aligned_cols=88 Identities=9% Similarity=0.043 Sum_probs=63.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047392 134 TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELV--TTSTVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (258)
Q Consensus 134 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 211 (258)
-|.-++.-+-+.+..+.+.++-..-.+..-.-+. ....|+.+.+++...|++++|...+-.+.....+ ..+...||
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHH
Confidence 3666777888888888888776655444221111 2225899999999999999999999998765443 56788899
Q ss_pred HHHHHcCCHHHH
Q 047392 212 NALCRVGNFNKA 223 (258)
Q Consensus 212 ~~~~~~g~~~~a 223 (258)
..+|..|.++.-
T Consensus 979 ~~lce~~~~~~L 990 (1139)
T 4fhn_B 979 NQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHCCHHHH
T ss_pred HHHHhCCChhhh
Confidence 988987766543
No 294
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=31.31 E-value=1.5e+02 Score=21.54 Aligned_cols=64 Identities=9% Similarity=0.063 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHH
Q 047392 150 GLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDVYAYNVVINAL 214 (258)
Q Consensus 150 ~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g-~~p~~~ty~~li~~~ 214 (258)
.+..+|..+-..|-+ ..+..-|-.++.........++...+|..+...| =..+..-+..++...
T Consensus 60 ~~~~~f~~~D~d~~G-~i~~~Ef~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~ 124 (204)
T 1jba_A 60 YVEAMFRAFDTNGDN-TIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESI 124 (204)
T ss_dssp HHHHHHHHHCCSSSS-EECHHHHHHHHHHHSSCCCTHHHHHHHHHHCSSCSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCC-eEeHHHHHHHHHHHccCCHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 344455554333211 2233334444444333344556666666665432 124444444444443
No 295
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.07 E-value=1.3e+02 Score=24.55 Aligned_cols=66 Identities=12% Similarity=0.018 Sum_probs=47.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCC
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGL--VNEALATFYRMKQFRCRPD 203 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~--~~~a~~l~~~M~~~g~~p~ 203 (258)
.+.+|.-|...|+.++|.+.++++....+. ..+++.++..++=+.++ -+.+.+++..+.+.|+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~---~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH---HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH---HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch---HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 456888888899999999999998543222 34567777777776543 4567788888887665443
No 296
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=30.98 E-value=37 Score=23.70 Aligned_cols=53 Identities=6% Similarity=-0.107 Sum_probs=40.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATF 192 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~ 192 (258)
|.-.|..-+.+++.+-|+++++-..+.| +-..|.+++..|-..=+.|.++++-
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g-----~kEcF~A~LytCYdLlrpDvVLEla 87 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE-----KRECFGACLFTCYDLLRPDVVLELA 87 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC-----SHHHHHHHHHHHTTCSCTTHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----chHHHHHHHHHHHhccChHHHHHHH
Confidence 4456677778888888888888888877 5667888888888777777777653
No 297
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=30.64 E-value=1.2e+02 Score=22.17 Aligned_cols=55 Identities=16% Similarity=0.093 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHH
Q 047392 186 NEALATFYRMKQFRCRPDVYA-YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242 (258)
Q Consensus 186 ~~a~~l~~~M~~~g~~p~~~t-y~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ 242 (258)
+.+.++|..|...|+--.... |-..-..+-..|++.+|.++|+.=++.+-. |-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~--P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE--PLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB--SHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHH
Confidence 448889999999887665543 555556677899999999999999988844 7654
No 298
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=29.92 E-value=57 Score=20.27 Aligned_cols=36 Identities=6% Similarity=-0.034 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCh
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNV 148 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~ 148 (258)
.++|.+.|.+|.++.++.|+ .+|...+.-+..-.++
T Consensus 14 ~eea~~~F~~LL~e~~V~~~-~tWe~~~~~i~~DpRY 49 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSN-ASWEQAMKMIINDPRY 49 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTT-CCHHHHHHHHHTSGGG
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCccc
Confidence 67888888888888777654 4777777766655443
No 299
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=29.02 E-value=1.4e+02 Score=26.73 Aligned_cols=50 Identities=6% Similarity=-0.043 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHHHHHcCCCC
Q 047392 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258 (258)
Q Consensus 205 ~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~~~~~g~~~ 258 (258)
.---.++..|++.|..+.|.++++.|-.+-+ -+...| .-|..|+|+|+++
T Consensus 517 dd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l---~~g~~g-eAL~~f~rA~~~~ 566 (570)
T 3f3f_C 517 DDIEWMLSICVEWRLPEIAKEIYTTLGNQML---SAHNII-ESIANFSRAGKYE 566 (570)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHH---HCccHH-HHHHHHHHcCChh
Confidence 4457889999999999999999999988754 466677 5667888888764
No 300
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=28.82 E-value=1.7e+02 Score=21.35 Aligned_cols=60 Identities=13% Similarity=0.035 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHHcCCHHHHHHHHHHhHh
Q 047392 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRP--DVYAYNVVIN-A-----LCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 172 ~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p--~~~ty~~li~-~-----~~~~g~~~~a~~~f~~M~~ 232 (258)
|-.-+..|-. |++-+|-++|++.=...-.+ ....|-.||+ . ..+.|+...|..++.+-..
T Consensus 36 ~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444444444 89999999999985543344 4566777777 2 2357999999999988754
No 301
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=28.77 E-value=2.7e+02 Score=23.56 Aligned_cols=95 Identities=6% Similarity=-0.097 Sum_probs=65.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCC---CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCHHHHHHH-
Q 047392 137 EMGIVFARGNNVKGLWDFLKEMSRRGNG---ELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQ--FRCRPDVYAYNVV- 210 (258)
Q Consensus 137 ~li~~~~~~g~~~~a~~~~~~m~~~g~~---~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~--~g~~p~~~ty~~l- 210 (258)
-|..-|...|++.+|.+++.++.+.=.. ...-..+|-.-+..|...|++.++...+..-.. ..+.+++..-+.+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5778899999999999999988775211 112233577778889999999999999988764 2233444433222
Q ss_pred -HHH--HH-HcCCHHHHHHHHHHhH
Q 047392 211 -INA--LC-RVGNFNKARFLLEQME 231 (258)
Q Consensus 211 -i~~--~~-~~g~~~~a~~~f~~M~ 231 (258)
..| +. ..+++..|...|-+-.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 222 23 5788999888887763
No 302
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=28.75 E-value=23 Score=25.55 Aligned_cols=20 Identities=10% Similarity=-0.081 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHccCChHHH
Q 047392 132 EVTCKEMGIVFARGNNVKGL 151 (258)
Q Consensus 132 ~~~y~~li~~~~~~g~~~~a 151 (258)
..++..++....+.|-++..
T Consensus 77 ~~s~rd~~r~a~~~GlI~d~ 96 (146)
T 1jog_A 77 AYGFKDILREALRFGLIGDM 96 (146)
T ss_dssp SCCHHHHHHHHHHTTSCSCH
T ss_pred CCCHHHHHHHHHHcCCCCcH
Confidence 34445555555555554433
No 303
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.66 E-value=1.1e+02 Score=25.05 Aligned_cols=63 Identities=19% Similarity=0.180 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHhHhCCC
Q 047392 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN--FNKARFLLEQMELPGF 235 (258)
Q Consensus 172 ~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~--~~~a~~~f~~M~~~~~ 235 (258)
.+.+|.-|...|+.++|.+.++++..-.+.+ ...+.++..++=+.++ .+.+..++..+...|+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ 233 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSST 233 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCC
Confidence 5678999999999999999999997422222 2334455555555433 3456677777766554
No 304
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.53 E-value=90 Score=21.56 Aligned_cols=48 Identities=19% Similarity=0.363 Sum_probs=28.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChH
Q 047392 137 EMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVN 186 (258)
Q Consensus 137 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~ 186 (258)
.++..+...+..-.|.++++.+++.+... +..|---.|+.+...|-+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i--s~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENI--GLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCC--CHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCC--CHhhHHHHHHHHHHCCCEE
Confidence 45666665555566777777777765333 5445544555555555443
No 305
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.44 E-value=1.7e+02 Score=21.15 Aligned_cols=54 Identities=13% Similarity=0.031 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCH
Q 047392 186 NEALATFYRMKQFRCRPDVYA-YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241 (258)
Q Consensus 186 ~~a~~l~~~M~~~g~~p~~~t-y~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~ 241 (258)
+++.++|..|...|+--.... |-..-..+-..|++.+|.++|+.=++.+-. |-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~--P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE--PRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB--SHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--cHH
Confidence 459999999999887655443 566666777899999999999999888744 743
No 306
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=28.27 E-value=1.5e+02 Score=20.60 Aligned_cols=85 Identities=15% Similarity=0.001 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHH---HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 047392 114 KATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKG---LWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALA 190 (258)
Q Consensus 114 ~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~---a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~ 190 (258)
.+.+.|...... |. ++..+--.+--++.++..... +..++++..+.+. |.-.-.-.-.|--|+.|.|++++|.+
T Consensus 19 ~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 19 KFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 444555544422 33 555555556778888887665 8888888877641 11111223345567899999999999
Q ss_pred HHHHHHhCCCCCC
Q 047392 191 TFYRMKQFRCRPD 203 (258)
Q Consensus 191 l~~~M~~~g~~p~ 203 (258)
.++.+.+. .|+
T Consensus 96 ~~~~lL~~--eP~ 106 (126)
T 1nzn_A 96 YVRGLLQT--EPQ 106 (126)
T ss_dssp HHHHHHHH--CTT
T ss_pred HHHHHHHh--CCC
Confidence 99999874 464
No 307
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.17 E-value=80 Score=22.16 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=28.9
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCCh
Q 047392 136 KEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLV 185 (258)
Q Consensus 136 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~ 185 (258)
..++..+...+..-.|.++++.+++.+... +..|----|+.+...|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~i--s~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAV--GLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHCCCE
Confidence 345666666655666777777777765333 555555555555555544
No 308
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=27.77 E-value=1.4e+02 Score=19.93 Aligned_cols=30 Identities=7% Similarity=0.022 Sum_probs=13.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVG 218 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g 218 (258)
.+|.++....|+.|+..+..-++.-|...+
T Consensus 29 e~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 29 QQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 334444444444444444444444444443
No 309
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=27.29 E-value=1e+02 Score=21.57 Aligned_cols=48 Identities=13% Similarity=0.053 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 047392 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220 (258)
Q Consensus 173 ~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~ 220 (258)
..++..+...++.-.|.+|++++++.+-..+..|----|+.+...|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 445555555555556677777776665555665555555666665543
No 310
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=26.51 E-value=95 Score=17.69 Aligned_cols=14 Identities=14% Similarity=0.007 Sum_probs=6.9
Q ss_pred cCCHHHHHHHHHHh
Q 047392 217 VGNFNKARFLLEQM 230 (258)
Q Consensus 217 ~g~~~~a~~~f~~M 230 (258)
.|+.+.|..++-+|
T Consensus 31 ~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 31 NNDLDLTIGLLLKE 44 (49)
T ss_dssp TTCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhc
Confidence 44555555554444
No 311
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.28 E-value=1.2e+02 Score=20.89 Aligned_cols=46 Identities=7% Similarity=0.012 Sum_probs=24.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047392 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (258)
Q Consensus 174 ~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 219 (258)
.++..+...+..-.|.+|++.+++.+-..+..|---.++.+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3444444445555566666666655544455554445555555543
No 312
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.89 E-value=1.6e+02 Score=20.18 Aligned_cols=42 Identities=5% Similarity=-0.144 Sum_probs=19.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 191 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
+|+.+....+.|++..--.-|..+...++++.|..+.-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444333334444455555555555555443
No 313
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=25.38 E-value=64 Score=25.43 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=28.4
Q ss_pred ccCCCCCCch---hhHHHHHHHHhhcCCcccccccc-cc----cCCCCCCHhHHHHHHhcCCccccccccccCCCCCCcc
Q 047392 3 VSKPLNSNHT---CLVQQVLPLILKNVPFDAKLAAS-TT----KTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRH 74 (258)
Q Consensus 3 ~~~p~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~-l~----~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 74 (258)
+|||..++.+ .++..++.+-....|....+... .. ...+.-....+...-......+.....|+.+-++|..
T Consensus 1 ~skP~~pp~~~p~~li~~lv~Ah~~t~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~iV~wAK~iP~F~~ 80 (257)
T 3v3e_B 1 MSKPKQPPDASPANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFAE 80 (257)
T ss_dssp -----------CCHHHHHHHHHHHHTSCCGGGCBCTTCCSCCSCCCSCCCHHHHHHHHHHHHHTHHHHHHHHHTSTTGGG
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhccCccccccccccccCcCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 5787776633 45555554444444443332111 00 0111112223333333344456666779999888884
No 314
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.35 E-value=36 Score=28.19 Aligned_cols=99 Identities=12% Similarity=0.037 Sum_probs=56.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047392 135 CKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEG-LVNEALATFYRMKQFRCRPDVYAYNVVINA 213 (258)
Q Consensus 135 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g-~~~~a~~l~~~M~~~g~~p~~~ty~~li~~ 213 (258)
.+.+|.-|...|+.++|.+.++++...++ ...+++..+..++=+.. .-+.+.+++..+.+.|+ .|-..+..|
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~---~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~----is~~~~~~G 86 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSL---LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH----LSTAQYYQG 86 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS----SCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccc---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC----CCHHHHHHH
Confidence 57888999999999999999888753322 12344555555544422 23456667777765443 223333344
Q ss_pred HHHcCCHHHHHHHHHHhHhCCCCCCCCHHHHHHHHHH
Q 047392 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (258)
Q Consensus 214 ~~~~g~~~~a~~~f~~M~~~~~~~~pd~~ty~~li~~ 250 (258)
| .++++.|.+..+. .|+...|-.-+-+
T Consensus 87 f---------~~~~~~l~Dl~lD-iP~a~~~La~~v~ 113 (339)
T 1ug3_A 87 L---------YEILELAEDMEID-IPHVWLYLAELVT 113 (339)
T ss_dssp H---------HHHHHHHHHHTTT-CTTHHHHHHHHHG
T ss_pred H---------HHHHhhChHhhcC-ccchHHHHHHHHH
Confidence 3 2334444443332 3777776655544
No 315
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=24.86 E-value=39 Score=20.23 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 047392 186 NEALATFYRMKQ-FRCRPDVYAYNVVINAL 214 (258)
Q Consensus 186 ~~a~~l~~~M~~-~g~~p~~~ty~~li~~~ 214 (258)
++|.+.|-+|.+ +++. ..-||.-.|..+
T Consensus 3 eEae~aF~~lL~~~~V~-s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVD-STWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCC-SSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCC-CCCcHHHHHHHh
Confidence 445555555543 3332 234455555555
No 316
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=24.64 E-value=1.2e+02 Score=20.39 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 047392 186 NEALATFYRMKQFR-CRPDVYAYNVVINALCRVGNFNKARFLLEQME 231 (258)
Q Consensus 186 ~~a~~l~~~M~~~g-~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~ 231 (258)
+....+|..+...| =..+..-+..++..+...-.-+++..+|..+-
T Consensus 84 ~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (147)
T 4ds7_A 84 QELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS 130 (147)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Confidence 45566676664432 12344444444443322223456666777664
No 317
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=24.39 E-value=34 Score=27.10 Aligned_cols=88 Identities=9% Similarity=0.003 Sum_probs=64.9
Q ss_pred ccCHHHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHccCC---------hHHHHHHHHHHHHcCCCCCcCHHHHH
Q 047392 109 TLGINKATEFYHWVERFF------HFFHNEVTCKEMGIVFARGNN---------VKGLWDFLKEMSRRGNGELVTTSTVT 173 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~------~~~p~~~~y~~li~~~~~~g~---------~~~a~~~~~~m~~~g~~~~~~~~t~~ 173 (258)
....+.|+.+..+|--.. +-.-...-|..+..+|++.|- ++...++++...+.|++- .=.+.|+
T Consensus 167 ~V~vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~-viPHIYs 245 (275)
T 3m6y_A 167 IVPIKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQ-VIPHVYS 245 (275)
T ss_dssp EEEHHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSC-BCCEECG
T ss_pred eeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCe-ecccccc
Confidence 556999999999995211 112345668899999999884 466788888888888642 2223699
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 047392 174 CLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 174 ~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
++|+-=--.-+.++..++|..|++
T Consensus 246 SIIDk~TG~TrpedV~~ll~~~K~ 269 (275)
T 3m6y_A 246 SIIDKETGNTKVEAVRELLAVVKK 269 (275)
T ss_dssp GGBCTTTCCBCHHHHHHHHHHHHH
T ss_pred eeccCCCCCCCHHHHHHHHHHHHH
Confidence 999865556678999999999876
No 318
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=24.28 E-value=1.5e+02 Score=20.07 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMK 196 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~ 196 (258)
++...+....+.|-+++. +.+..|.
T Consensus 55 s~rd~~r~a~~~glI~~~-~~w~~m~ 79 (119)
T 1wty_A 55 SPRAAIRGAFQVGLLPED-PFWLEML 79 (119)
T ss_dssp SHHHHHHHHHHHTSSCCC-HHHHHHH
T ss_pred CHHHHHHHHHHcCCCCcH-HHHHHHH
Confidence 466666666666655444 3444443
No 319
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=24.04 E-value=32 Score=26.87 Aligned_cols=88 Identities=9% Similarity=0.033 Sum_probs=64.4
Q ss_pred ccCHHHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHccCC---------hHHHHHHHHHHHHcCCCCCcCHHHHH
Q 047392 109 TLGINKATEFYHWVERFF------HFFHNEVTCKEMGIVFARGNN---------VKGLWDFLKEMSRRGNGELVTTSTVT 173 (258)
Q Consensus 109 ~~~~~~a~~~f~~m~~~~------~~~p~~~~y~~li~~~~~~g~---------~~~a~~~~~~m~~~g~~~~~~~~t~~ 173 (258)
....+.|+.+..+|--.. +-.-...-|..+..+|++.|- .+...++++...+.|++- .=.+.|+
T Consensus 144 ~V~vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~-viPHIYs 222 (249)
T 3m0z_A 144 IVPLETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSK-IIPHIYS 222 (249)
T ss_dssp EEEHHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSC-BCCBCCG
T ss_pred eeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCe-ecccccc
Confidence 445899999999995210 112346668899999999984 466788888888888642 1223699
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 047392 174 CLIKVLGEEGLVNEALATFYRMKQ 197 (258)
Q Consensus 174 ~li~~~~~~g~~~~a~~l~~~M~~ 197 (258)
++|+----.-+.++..++|..|++
T Consensus 223 sIIDk~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 223 SIIDKASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp GGBCTTTCCBCHHHHHHHHHHHHH
T ss_pred eeccCCCCCCCHHHHHHHHHHHHH
Confidence 999866566679999999998875
No 320
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=23.46 E-value=2.2e+02 Score=20.88 Aligned_cols=97 Identities=7% Similarity=-0.076 Sum_probs=59.8
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcC-CCC-----CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--C----------
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRG-NGE-----LVTTSTVTCLIKVLGEEGLVNEALATFYRMKQF--R---------- 199 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g-~~~-----~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~--g---------- 199 (258)
=+..+...|.++.|.-+.+-+.... ..+ ..-..++..+-+++-..|++.+|...|++-.+. .
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3455666777777666655533221 112 111235677788899999999999999984220 0
Q ss_pred ------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 200 ------------CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 200 ------------~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
...+...-=-+-.+|.+.|+.++|..+++.+..+.
T Consensus 106 ~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 106 TGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred ccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 00111221236678889999999999998875543
No 321
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=23.37 E-value=1.7e+02 Score=19.53 Aligned_cols=77 Identities=9% Similarity=0.056 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhc------CChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCHHH
Q 047392 171 TVTCLIKVLGEE------GLVNEALATFYRMKQFR-CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243 (258)
Q Consensus 171 t~~~li~~~~~~------g~~~~a~~l~~~M~~~g-~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~~t 243 (258)
+|.-.+..+... ...+....+|+.+...| =..+..-+..++..+...-.-+++..+|.. -..+ -...+
T Consensus 64 ~~~eF~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~-d~~~----dg~i~ 138 (149)
T 2mys_C 64 TFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKG-QEDS----NGCIN 138 (149)
T ss_pred cHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCCCCCHHHHHHHHhh-CCCC----CCcEe
Confidence 344444444443 33466777787776432 123444444444444332345567777776 3222 33456
Q ss_pred HHHHHHHHH
Q 047392 244 YTILISSYC 252 (258)
Q Consensus 244 y~~li~~~~ 252 (258)
|.-++..+.
T Consensus 139 ~~eF~~~~~ 147 (149)
T 2mys_C 139 YEAFVKHIM 147 (149)
T ss_pred HHHHHHHHh
Confidence 666666554
No 322
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=23.36 E-value=3e+02 Score=27.55 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCC---------------hHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhCC
Q 047392 171 TVTCLIKVLGEEGL---------------VNEALATFYRMKQFRCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (258)
Q Consensus 171 t~~~li~~~~~~g~---------------~~~a~~l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~f~~M~~~~ 234 (258)
.=+.||+++++.|. .++..+.|.+..+- +.+ |....-..+.--.++|++..|.+++.++.+..
T Consensus 1236 ~k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~-~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k 1314 (1354)
T 3lxu_X 1236 QKNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKF-VDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK 1314 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTS-SCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh-cccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35678888877543 34455555555542 112 22222222222336788999999999888754
Q ss_pred CCCCCCHHHHHHHHHHHHHc
Q 047392 235 FRCPPDVYTYTILISSYCKY 254 (258)
Q Consensus 235 ~~~~pd~~ty~~li~~~~~~ 254 (258)
|....|..++..+-.-
T Consensus 1315 ----~~~~~~~~~~~~~~~l 1330 (1354)
T 3lxu_X 1315 ----RTRDHFVELAAINGAL 1330 (1354)
T ss_dssp ----CCHHHHHHHHHHHHHH
T ss_pred ----ccHHHHHHHHHHHHHc
Confidence 7888888887766543
No 323
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=22.98 E-value=1.7e+02 Score=19.51 Aligned_cols=34 Identities=21% Similarity=0.107 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHcC----CHHHHHHHHHHhHhCCC
Q 047392 202 PDVYAYNVVINALCRVG----NFNKARFLLEQMELPGF 235 (258)
Q Consensus 202 p~~~ty~~li~~~~~~g----~~~~a~~~f~~M~~~~~ 235 (258)
|+..+=+-+++.+..++ +-++|..+.+.|.+.|+
T Consensus 48 ~~~F~G~dlVdWL~~~~~~~~~r~eAv~lg~~Ll~~G~ 85 (105)
T 1fsh_A 48 ANAVIGADVVDWLYTHVEGFKERREARKYASSMLKHGF 85 (105)
T ss_dssp SSCCHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHTTT
T ss_pred CceeEcHHHHHHHHHhCcCCCCHHHHHHHHHHHHHCCc
Confidence 45555555666655553 24566666666666654
No 324
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=22.79 E-value=1.1e+02 Score=21.11 Aligned_cols=23 Identities=17% Similarity=-0.090 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 047392 172 VTCLIKVLGEEGLVNEALATFYR 194 (258)
Q Consensus 172 ~~~li~~~~~~g~~~~a~~l~~~ 194 (258)
...|+.++-+.|.-+-|..|-+.
T Consensus 66 v~~L~~AL~~i~~~diAe~Ie~~ 88 (122)
T 3ezq_B 66 VAHLVGALRSCQMNLVADLVQEV 88 (122)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Confidence 44445555444444444444333
No 325
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=22.69 E-value=2.6e+02 Score=23.50 Aligned_cols=66 Identities=3% Similarity=-0.104 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHccCCh--HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047392 131 NEVTCKEMGIVFARGNNV--KGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEALATFYRMKQFR 199 (258)
Q Consensus 131 ~~~~y~~li~~~~~~g~~--~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a~~l~~~M~~~g 199 (258)
+..+|..+|.-+....++ +++..+++.|.+... + +...=.-|+..+.|....+|...+.+-|.+.+
T Consensus 22 ~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~-~--~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~ 89 (377)
T 3r88_A 22 SVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNA-R--PAQIAAFAVAMTMKAPTADEVGELAGVMLSHA 89 (377)
T ss_dssp --CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCS-C--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC-C--HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhC
Confidence 344799999999877664 789999999987643 2 44444555666677778889888888898754
No 326
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=22.50 E-value=2.2e+02 Score=20.57 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=10.5
Q ss_pred HHccCChHHHHHHHHHHHHcCCCC
Q 047392 142 FARGNNVKGLWDFLKEMSRRGNGE 165 (258)
Q Consensus 142 ~~~~g~~~~a~~~~~~m~~~g~~~ 165 (258)
.+..|+.+.-.++.+-+.+.|..+
T Consensus 45 A~~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 45 VLRNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCCS
T ss_pred HHHcCCcchHHHHHHHHHHCCCCC
Confidence 333444443444444444444433
No 327
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=22.12 E-value=1.5e+02 Score=22.91 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHhHhCCCCCCCCH
Q 047392 186 NEALATFYRMKQFRCRPDVYA-YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241 (258)
Q Consensus 186 ~~a~~l~~~M~~~g~~p~~~t-y~~li~~~~~~g~~~~a~~~f~~M~~~~~~~~pd~ 241 (258)
+++..+|..|...|+--.... |-..-..+-..|++.+|.++|+.=++.+-. |-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~--P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK--PFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB--SHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--cHH
Confidence 578899999999887665543 566666777899999999999998887744 743
No 328
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.01 E-value=3.7e+02 Score=22.93 Aligned_cols=106 Identities=14% Similarity=0.089 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhh-------CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-C----CCcCH----------
Q 047392 112 INKATEFYHWVERF-------FHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGN-G----ELVTT---------- 169 (258)
Q Consensus 112 ~~~a~~~f~~m~~~-------~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-~----~~~~~---------- 169 (258)
.++..++++..... .++..+......++.. -.|+..++..+++....... . ...+.
T Consensus 167 ~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 167 TEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 45556666655433 2344455555655555 25777777777766654321 0 00111
Q ss_pred --------HHHHHHHHHHH---hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047392 170 --------STVTCLIKVLG---EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (258)
Q Consensus 170 --------~t~~~li~~~~---~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 219 (258)
..+-.+|+++. +.++.+.|+..+.+|.+.|..|..+.=..++.+.-..|.
T Consensus 245 ~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 245 SARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp CCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred hhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 11223444443 457888888888888888877765554444444444443
No 329
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=21.92 E-value=80 Score=18.75 Aligned_cols=23 Identities=9% Similarity=-0.060 Sum_probs=16.7
Q ss_pred hcCChHHHHHHHHHHHhCC-CCCC
Q 047392 181 EEGLVNEALATFYRMKQFR-CRPD 203 (258)
Q Consensus 181 ~~g~~~~a~~l~~~M~~~g-~~p~ 203 (258)
...+++.|...|.+++..| ++|+
T Consensus 32 ~~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 32 NNWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TTTCHHHHHHHHHHHHHTTCSCGG
T ss_pred cCCCHHHHHHHHHHHHHcCCCCHH
Confidence 3568889999999988654 5544
No 330
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=21.76 E-value=2e+02 Score=19.60 Aligned_cols=49 Identities=6% Similarity=0.034 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 184 LVNEALATFYRMKQFRC-RPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 184 ~~~~a~~l~~~M~~~g~-~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
..+....+|+.+...|- ..+..-+..++..+...-.-+++..+|..+-.
T Consensus 89 ~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~ 138 (158)
T 2jnf_A 89 MQQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDA 138 (158)
T ss_dssp TSSTHHHHHHHHCSSSSSSEEHHHHHHHHHHHCTTCCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCcCCHHHHHHHHHHhCC
Confidence 34556667776654321 23333344444433222245667777777643
No 331
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.73 E-value=61 Score=24.74 Aligned_cols=90 Identities=11% Similarity=0.031 Sum_probs=55.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCc-----CHHHHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCC-------
Q 047392 138 MGIVFARGNNVKGLWDFLKEMSRRGNGELV-----TTSTVTCLIKVLGEE---GLVNEALATFYRMKQFRCRP------- 202 (258)
Q Consensus 138 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-----~~~t~~~li~~~~~~---g~~~~a~~l~~~M~~~g~~p------- 202 (258)
.+...++.|+.+.+..+++.+.+.|..+.. |..-++.|..+ +.. |+.+-+..+++.-...+...
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 455567789999888888888888876542 33345555555 445 88887777777654432111
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047392 203 ---DVYAYNVVINALCRVGNFNKARFLLEQ 229 (258)
Q Consensus 203 ---~~~ty~~li~~~~~~g~~~~a~~~f~~ 229 (258)
|..- .+.+...+..|+.+-+..+.+.
T Consensus 84 ~~~d~~g-~t~L~~A~~~g~~~~v~~Ll~~ 112 (256)
T 2etb_A 84 TDEFYQG-HSALHIAIEKRSLQCVKLLVEN 112 (256)
T ss_dssp CSTTTTT-CCHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccccC-CCHHHHHHHcCCHHHHHHHHHc
Confidence 1122 2345566778887766665543
No 332
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=21.50 E-value=37 Score=23.48 Aligned_cols=51 Identities=10% Similarity=0.002 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---ccCChHHHHHHHHHHHHcCCCC
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFA---RGNNVKGLWDFLKEMSRRGNGE 165 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~---~~g~~~~a~~~~~~m~~~g~~~ 165 (258)
.+.|++....|++.....-....||..|..+. ..++. .++++.+.+.++.|
T Consensus 43 y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~lgL 96 (120)
T 1q2z_A 43 FMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGITL 96 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcCC
Confidence 45677777766644322235666787777664 33333 44555566666554
No 333
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.78 E-value=1.5e+02 Score=21.93 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 047392 171 TVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217 (258)
Q Consensus 171 t~~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 217 (258)
.++-|+.+++...-+++++-.+++....| ..+..+|---+..+++.
T Consensus 113 l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 113 GLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQ 158 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 45666666666666666666666666655 35555555555555554
No 334
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.73 E-value=1.1e+02 Score=17.94 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=5.5
Q ss_pred HHHHHHHHHHh
Q 047392 220 FNKARFLLEQM 230 (258)
Q Consensus 220 ~~~a~~~f~~M 230 (258)
++.|+++..+|
T Consensus 38 le~AmewL~k~ 48 (54)
T 2cos_A 38 IEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555444
No 335
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=20.54 E-value=4.7e+02 Score=23.54 Aligned_cols=117 Identities=8% Similarity=-0.051 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHhcCChHHH
Q 047392 111 GINKATEFYHWVERFFHFFHNEV--TCKEMGIVFARGNNVKGLWDFLKEMSRRGNGELVTTSTVTCLIKVLGEEGLVNEA 188 (258)
Q Consensus 111 ~~~~a~~~f~~m~~~~~~~p~~~--~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~t~~~li~~~~~~g~~~~a 188 (258)
+++.|..+|........+.+... .+..+...+...+...++...+....... ...+..-|.+ ..-.+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~--r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRV--RMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHH--HHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHH--HHHHHCCCHHHH
Confidence 46788888888865444433222 22223333444453455666666654443 2113333433 334577999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 047392 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (258)
Q Consensus 189 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~f~~M~~ 232 (258)
.+.|+.|...... ...-.=-+=.++...|+.++|..+|.+...
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999763221 122122333466678999999999999875
No 336
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=20.52 E-value=3.1e+02 Score=21.40 Aligned_cols=136 Identities=10% Similarity=-0.040 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC----------CcCHHHHHHHHHHHHh
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFARGNNVKGLWDFLKEMSRRGNGE----------LVTTSTVTCLIKVLGE 181 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~~----------~~~~~t~~~li~~~~~ 181 (258)
.++..+++.......|+..+......+... -.|++..+...++.....+-.. .........++++...
T Consensus 163 ~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~--~~G~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~ 240 (319)
T 2chq_A 163 KEAMKKRLLEICEKEGVKITEDGLEALIYI--SGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALK 240 (319)
T ss_dssp HHHHHHHHHHHHHTTCCCBCHHHHHHHHHT--TTTCHHHHHHHHHHHHHSSSCBCHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence 566677777666566777777666666532 2688888887777665432111 1122234556666654
Q ss_pred cCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHh---HhCCCCCCCCHHHHHHHHHHHH
Q 047392 182 EGLVNEALATFYRMKQ-FRCRPDVYAYNVVINALCRV-----GNFNKARFLLEQM---ELPGFRCPPDVYTYTILISSYC 252 (258)
Q Consensus 182 ~g~~~~a~~l~~~M~~-~g~~p~~~ty~~li~~~~~~-----g~~~~a~~~f~~M---~~~~~~~~pd~~ty~~li~~~~ 252 (258)
|+.++|.+++.++.. .|..|.... ..+....+. ..+.++.+...+. .+.|.. |. .....++-.++
T Consensus 241 -~~~~~a~~~l~~l~~~~g~~~~~i~--~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~lk~~~~--~~-~~le~l~~~l~ 314 (319)
T 2chq_A 241 -GNFMEARELLDRLMVEYGMSGEDIV--AQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGAN--ER-IQLDAYLAYLS 314 (319)
T ss_dssp -TCHHHHHHHHHHHHHHSCCCHHHHH--HHHHHHHHTSCSCTTHHHHHHHHHHHHHHHHHTTCC--HH-HHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHcCCCHHHHH--HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCC--HH-HHHHHHHHHHH
Confidence 899999999999987 887654433 223333443 2234444433322 234532 43 34555555555
Q ss_pred HcC
Q 047392 253 KYG 255 (258)
Q Consensus 253 ~~g 255 (258)
+..
T Consensus 315 ~~~ 317 (319)
T 2chq_A 315 TLA 317 (319)
T ss_dssp HTT
T ss_pred Hhh
Confidence 443
No 337
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=20.40 E-value=66 Score=23.31 Aligned_cols=51 Identities=10% Similarity=0.002 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---ccCChHHHHHHHHHHHHcCCCC
Q 047392 112 INKATEFYHWVERFFHFFHNEVTCKEMGIVFA---RGNNVKGLWDFLKEMSRRGNGE 165 (258)
Q Consensus 112 ~~~a~~~f~~m~~~~~~~p~~~~y~~li~~~~---~~g~~~~a~~~~~~m~~~g~~~ 165 (258)
.+.|++....|++.....-....||..|..+. ..++. .++++.+.+.++.|
T Consensus 74 y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l---~~FW~~Iv~~~lgL 127 (152)
T 1rw2_A 74 FMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGITL 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCC---HHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCccc
Confidence 45666666666643322223455777776654 22333 44444566555544
Done!