BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047393
(373 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296084954|emb|CBI28363.3| unnamed protein product [Vitis vinifera]
Length = 930
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 233/412 (56%), Positives = 285/412 (69%), Gaps = 46/412 (11%)
Query: 1 LKLCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
LKLCS+I D EI WN L++AC+ A+DYE++H+LL RIQ+ G +D S CDI SC +P+
Sbjct: 519 LKLCSMIPDSEISWNFLIRACLGAEDYEIIHKLLWRIQVSHGNLDPVSACDIFASCSSPV 578
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
LLNVGTQA AYMTKRGLISHP + N LI + S CGK D+A AF PEK++ SWT I+S
Sbjct: 579 LLNVGTQAHAYMTKRGLISHPTISNSLIQMYSACGKFDEAVQAFNLMPEKDTCSWTSILS 638
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
ARV HGHPSEAL+L +W+ + +TFRS L A A MGLV EA+RLF SM+EVY IE
Sbjct: 639 ARVEHGHPSEALNLISQMRWKNKPADQSTFRSVLNACAQMGLVDEAFRLFFSMKEVYGIE 698
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
P EEHYS MVE LGRAGMFEEVL+FI G+ KL PLIWRTLL SSR+HG+MK+A+YA +
Sbjct: 699 PLEEHYSCMVEVLGRAGMFEEVLDFINGVPTFKLGPLIWRTLLSSSRIHGNMKVAQYAAE 758
Query: 241 KLLELDPGMYVG-------------------------------CWIEIQNKIYEFVSNEE 269
KLLEL+P + WIEI+N+IYEF S+E
Sbjct: 759 KLLELEPSDFSANLLLEQVLLTLGEWDNALKLKTKTKSMRASSSWIEIRNRIYEFASDEN 818
Query: 270 LTSEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHG 314
EVS KLAEIE M+ELG+V +++ L+ T+MKA+A GLIS PHG
Sbjct: 819 PAKEVSAKLAEIEGKMEELGYVADKNHLLHNAEEEEYDGVGLHHTEMKALAFGLISLPHG 878
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
MP RV+K+V MCG HSAC+FMST +ERELVVKDP SFHHF+DGKCSC+D +
Sbjct: 879 MPVRVVKNVRMCGDCHSACKFMSTFLERELVVKDPYSFHHFRDGKCSCRDTW 930
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+++ +L +C N + GTQA Y+ K G S + N L++ ++CG ++ F
Sbjct: 221 DAFAFSMVLGACTNLECWDFGTQAHCYIIKMGFDSCLYLENSLMDFYAKCGDLEGMRRVF 280
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
EKN +SW I+ V++ H EAL +F+ + + + S LKA + +G
Sbjct: 281 SHMSEKNLVSWNTFINGYVHNFHYLEALRIFQILMEEVSQCDDFSLLSILKAVSGLG 337
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS+ +L +C L+ G + K+ + V N L+++ CG ++DA + F
Sbjct: 120 DSFVFAVVLRACGMVECLSYGRGVHGLVVKQSSVVDSFVENALVSMYGSCGALEDAAVVF 179
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
+ + + W+ I+S V +G E L +F D
Sbjct: 180 GGIDKPDLVGWSSILSGYVKNGLEEEGLRIFCD 212
Score = 37.7 bits (86), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
N + + G + +A F PE++ +SWT ++S HG SE L +F D
Sbjct: 55 NLYLRMYVNAGAMQEARKLFDEMPERSLVSWTIVMSGYARHGPASEVLMMFWD 107
>gi|225436291|ref|XP_002269762.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 906
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/412 (56%), Positives = 285/412 (69%), Gaps = 46/412 (11%)
Query: 1 LKLCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
LKLCS+I D EI WN L++AC+ A+DYE++H+LL RIQ+ G +D S CDI SC +P+
Sbjct: 495 LKLCSMIPDSEISWNFLIRACLGAEDYEIIHKLLWRIQVSHGNLDPVSACDIFASCSSPV 554
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
LLNVGTQA AYMTKRGLISHP + N LI + S CGK D+A AF PEK++ SWT I+S
Sbjct: 555 LLNVGTQAHAYMTKRGLISHPTISNSLIQMYSACGKFDEAVQAFNLMPEKDTCSWTSILS 614
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
ARV HGHPSEAL+L +W+ + +TFRS L A A MGLV EA+RLF SM+EVY IE
Sbjct: 615 ARVEHGHPSEALNLISQMRWKNKPADQSTFRSVLNACAQMGLVDEAFRLFFSMKEVYGIE 674
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
P EEHYS MVE LGRAGMFEEVL+FI G+ KL PLIWRTLL SSR+HG+MK+A+YA +
Sbjct: 675 PLEEHYSCMVEVLGRAGMFEEVLDFINGVPTFKLGPLIWRTLLSSSRIHGNMKVAQYAAE 734
Query: 241 KLLELDPGMYVG-------------------------------CWIEIQNKIYEFVSNEE 269
KLLEL+P + WIEI+N+IYEF S+E
Sbjct: 735 KLLELEPSDFSANLLLEQVLLTLGEWDNALKLKTKTKSMRASSSWIEIRNRIYEFASDEN 794
Query: 270 LTSEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHG 314
EVS KLAEIE M+ELG+V +++ L+ T+MKA+A GLIS PHG
Sbjct: 795 PAKEVSAKLAEIEGKMEELGYVADKNHLLHNAEEEEYDGVGLHHTEMKALAFGLISLPHG 854
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
MP RV+K+V MCG HSAC+FMST +ERELVVKDP SFHHF+DGKCSC+D +
Sbjct: 855 MPVRVVKNVRMCGDCHSACKFMSTFLERELVVKDPYSFHHFRDGKCSCRDTW 906
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+++ +L +C N + GTQA Y+ K G S + N L++ ++CG ++ F
Sbjct: 162 DAFAFSMVLGACTNLECWDFGTQAHCYIIKMGFDSCLYLENSLMDFYAKCGDLEGMRRVF 221
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
EKN +SW I+ V++ H EAL +F+ + + + S LKA + +G
Sbjct: 222 SHMSEKNLVSWNTFINGYVHNFHYLEALRIFQILMEEVSQCDDFSLLSILKAVSGLG 278
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%)
Query: 42 GFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD 101
G D + + +L C L G + + K L S V + LI++ S+CG + A
Sbjct: 335 GGYDEFIMTSLLKWCSLESSLESGKMFHSLIIKLDLKSDSYVLSSLIDMYSKCGIWEAAK 394
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
F + ++ W+ +IS +G +EAL LF+ Q+ N TF S + A
Sbjct: 395 RVFTRVEQPDTAPWSALISGHSWNGCFAEALKLFRKMQFDGIKANEFTFTSVILA 449
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS+ +L +C L+ G + K+ + V N L+++ CG ++DA + F
Sbjct: 61 DSFVFAVVLRACGMVECLSYGRGVHGLVVKQSSVVDSFVENALVSMYGSCGALEDAAVVF 120
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
+ + + W+ I+S V +G E L +F D
Sbjct: 121 GGIDKPDLVGWSSILSGYVKNGLEEEGLRIFCD 153
>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Brachypodium distachyon]
Length = 877
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 124/375 (33%), Positives = 192/375 (51%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + + +LN+C + G Q A++ KR +S GN L+ ++CG I+DADLAF
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAF 563
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
PEK +SW+ +I HGH ALD+F + S N T S L A GLV
Sbjct: 564 SGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVD 623
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
EA R F SM+E++ IE +EEHY+ M++ LGRAG ++ +E + + P + +W LL
Sbjct: 624 EAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSM-PFQTNAAVWGALLA 682
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------------GMY------------------ 250
+SRVH D +L + A +KL L+P GM+
Sbjct: 683 ASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKE 742
Query: 251 -VGCWIEIQNKIYEFVSNEELTSEVSD---KLAEIEENMKELGFVLNRSL---------- 296
W+E+++K++ F+ ++ D KL E+ + M + G+V N +
Sbjct: 743 PAMSWVELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLHDVDKNEK 802
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ ++ AVA LIS P G P RV K++ +C H+A +F+S I+ RE++++D
Sbjct: 803 ELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHAAFKFISDIVSREIIIRDINR 862
Query: 352 FHHFKDGKCSCKDAY 366
FHHF+DG CSC+D +
Sbjct: 863 FHHFRDGACSCRDYW 877
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 78/172 (45%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN + C+ + ELL +++ + +++ IL +C N+G Q +
Sbjct: 269 VSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGF 328
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M K S + L+++ ++ G +DDA F P+++ + W +IS + +EA
Sbjct: 329 MVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEA 388
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
L LF + +N TT + LK+ A + + + ++ E++ + S
Sbjct: 389 LSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSH 440
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 4/152 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGTQAQ 69
+ WN L+ A +K + H + ++ G + + + ++N+C L G +
Sbjct: 168 VSWNGLMSAYVK--NDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVH 225
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
A + + G N L+++ S+ G I A + F PE + +SW IS V HGH
Sbjct: 226 AMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQ 285
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
AL+L + N T S LKA A G
Sbjct: 286 HALELLLQMKSSGLVPNVFTLSSILKACAGSG 317
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP-EKNSLSWTFIISARV 123
GTQ A GL V N L+ + G +D+A + F E+N++SW ++SA V
Sbjct: 119 GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYV 178
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ S A+ +F + W N F + A
Sbjct: 179 KNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNA 211
>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
Length = 877
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 195/375 (52%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + + +LN+C + G Q A++ KR +S GN L+ ++CG I+DA+LAF
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAF 563
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
S PE+ +SW+ +I HGH AL+LF + N T S L A GLV
Sbjct: 564 SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD 623
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
EA R F SM+E++ I+ +EEHYS M++ LGRAG ++ +E + + P + IW LL
Sbjct: 624 EAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSM-PFQANASIWGALLG 682
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------------GMY------------------ 250
+SRVH D +L K A +KL L+P GM+
Sbjct: 683 ASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKE 742
Query: 251 -VGCWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV---------LNRS-- 295
WIE+++K++ F+ ++ +T E+ KL E+ + M + GFV L+RS
Sbjct: 743 PAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEK 802
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ ++ AVA L+S P G P RV K++ +C H A +F+S I+ RE++++D
Sbjct: 803 ELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINR 862
Query: 352 FHHFKDGKCSCKDAY 366
FHHF+DG CSC D +
Sbjct: 863 FHHFRDGTCSCGDYW 877
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 4/152 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ A +K ++ + + ++N+C + G Q A
Sbjct: 168 VSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAM 227
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G N L+++ + G++D A + F+ P+ + +SW +IS V +GH A
Sbjct: 228 VVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRA 287
Query: 132 LDLFKDKQWRYTSMNPTTF--RSALKAYALMG 161
++L Q +Y+ + P F S LKA + G
Sbjct: 288 IELL--LQMKYSGLVPNVFTLSSILKACSGAG 317
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
Query: 8 SDVEIPWNLLLKACI-KAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
SDV + WN L+ C+ D+ + ELL +++ + +++ IL +C ++G
Sbjct: 266 SDV-VSWNALISGCVLNGHDHRAI-ELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGR 323
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q +M K S +G L+++ ++ +DDA F ++ + +IS + G
Sbjct: 324 QIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGG 383
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
EAL LF + + +N TT + LK+ A
Sbjct: 384 RHDEALSLFYELRKEGLGVNRTTLAAVLKSTA 415
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF-KSTPEKNSLSWTFIISAR 122
+G Q A G S V N L+ + G +DDA F ++ E+N++SW ++SA
Sbjct: 118 LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAY 177
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTF 150
V + +A+ +F + W + + PT F
Sbjct: 178 VKNDQCGDAIQVFGEMVW--SGIQPTEF 203
>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
Length = 877
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 195/375 (52%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + + +LN+C + G Q A++ KR +S GN L+ ++CG I+DA+LAF
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAF 563
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
S PE+ +SW+ +I HGH AL+LF + N T S L A GLV
Sbjct: 564 SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD 623
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
EA R F SM+E++ I+ +EEHYS M++ LGRAG ++ +E + + P + IW LL
Sbjct: 624 EAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSM-PFQANASIWGALLG 682
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------------GMY------------------ 250
+SRVH D +L K A +KL L+P GM+
Sbjct: 683 ASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKE 742
Query: 251 -VGCWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV---------LNRS-- 295
WIE+++K++ F+ ++ +T E+ KL E+ + M + GFV L+RS
Sbjct: 743 PAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEK 802
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ ++ AVA L+S P G P RV K++ +C H A +F+S I+ RE++++D
Sbjct: 803 ELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINR 862
Query: 352 FHHFKDGKCSCKDAY 366
FHHF+DG CSC D +
Sbjct: 863 FHHFRDGTCSCGDYW 877
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 4/147 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ A +K ++ + + ++N+C + G Q A
Sbjct: 168 VSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAM 227
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G N L+++ + G++D A + F+ P+ + +SW +IS V +GH A
Sbjct: 228 VVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRA 287
Query: 132 LDLFKDKQWRYTSMNPTTF--RSALKA 156
++L Q +Y+ + P F S LKA
Sbjct: 288 IELL--LQMKYSGLVPNVFTLSSILKA 312
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
Query: 8 SDVEIPWNLLLKACI-KAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
SDV + WN L+ C+ D+ + ELL +++ + +++ IL +C ++G
Sbjct: 266 SDV-VSWNALISGCVLNGHDHRAI-ELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGR 323
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q +M K S +G L+++ ++ +DDA F ++ + +IS + G
Sbjct: 324 QIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGG 383
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
EAL LF + + +N TT + LK+ A
Sbjct: 384 RHDEALSLFYELRKEGLGVNRTTLAAVLKSTA 415
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF-KSTPEKNSLSWTFIISAR 122
+G Q A G S V N L+ + G +DDA F ++ E+N++SW ++SA
Sbjct: 118 LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAY 177
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTF 150
V + +A+ +F + W + + PT F
Sbjct: 178 VKNDQCGDAIQVFGEMVW--SGIQPTEF 203
>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 882
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 191/375 (50%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS+ + +LN+C + G Q A++ KR S GN L+ ++CG I+DAD+AF
Sbjct: 509 DSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAF 568
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
PE+ +SW+ +I HGH ALDLF + N T S L A GLV
Sbjct: 569 SGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVD 628
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+A + F SM+E + I+ +EEHY+ M++ LGRAG E+ +E + + P + +W LL
Sbjct: 629 DAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNM-PFQANAAVWGALLG 687
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------------GMY------------------ 250
+SRVH D +L + A +KL L+P GM+
Sbjct: 688 ASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKE 747
Query: 251 -VGCWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL---------- 296
W+EI++K++ F+ ++ +T ++ KLAE+ + M + G+V N +
Sbjct: 748 PAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYVPNVEVDLHDVDRSEK 807
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ ++ AVA LIS P G P RV K++ +C H A +++S I+ RE++++D
Sbjct: 808 ELLLSHHSERLAVAFALISTPSGAPIRVKKNLRICRDCHVAFKYISKIVSREIIIRDINR 867
Query: 352 FHHFKDGKCSCKDAY 366
FHHF +G CSC D +
Sbjct: 868 FHHFTNGTCSCGDYW 882
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 60/150 (40%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A +K + + + + ++N+C L G Q
Sbjct: 171 VSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGA 230
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G N L+++ S+ G I+ A F+ P + +SW IS V HGH A
Sbjct: 231 VVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRA 290
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
L+L + N T S LKA A G
Sbjct: 291 LELLLQMKSSGLVPNVFTLSSVLKACAGAG 320
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 2/149 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN + C+ ELL +++ + +++ +L +C N+G Q +
Sbjct: 272 VSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGF 331
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M K V L+++ ++ G +DDA F P ++ + W +IS + G E
Sbjct: 332 MVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEV 391
Query: 132 LDLFK--DKQWRYTSMNPTTFRSALKAYA 158
L LF K+ +N TT S LK+ A
Sbjct: 392 LSLFHRMRKEGLDLDVNRTTLASVLKSTA 420
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 8/164 (4%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G +++ K GL++ N L+ + SRC A F P+ +SW+ +++A
Sbjct: 20 LFAGAHLHSHLLKSGLLA--GFSNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTA 77
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
N+G P +AL F+ + R N LK + + + L ++ V+ +
Sbjct: 78 YSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPDVRFGAQVHALAVATRLVHDVFV 137
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGI--VPGKLCPLIWRTLL 223
+ + +V G GM +E V G+ + W T++
Sbjct: 138 A----NALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMI 177
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 4/141 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFID--SYSICDILNSCLNPILLNVGTQAQ 69
I WN L+ C + V L R++ +D ++ +L S + + Q
Sbjct: 373 ILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVH 432
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
A K GL+S V N LI+ +CG++D A FK + + +S T +++A H
Sbjct: 433 ALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGE 492
Query: 130 EALDLFKDKQWRYTSMNPTTF 150
+A+ LF Q + P +F
Sbjct: 493 DAIKLF--VQMLRKGLEPDSF 511
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS----TPEKNSLSWTF 117
+ G Q A L+ V N L+ + G +D+A F E+N++SW
Sbjct: 116 VRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNT 175
Query: 118 IISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ISA V + +A+ +F++ W N F + A
Sbjct: 176 MISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNA 214
>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
Length = 784
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 124/375 (33%), Positives = 195/375 (52%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + + +LN+C + G Q A++ KR +S GN L+ ++CG I+DA+LAF
Sbjct: 411 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAF 470
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
S PE+ +SW+ +I HGH AL+LF + N T S L A GLV
Sbjct: 471 SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD 530
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
EA R F SM+E++ I+ +EEHYS M++ LGRAG ++ +E + + P + +W LL
Sbjct: 531 EAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSM-PFQANASVWGALLG 589
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------------GMY------------------ 250
+SRVH D +L K A +KL L+P GM+
Sbjct: 590 ASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKE 649
Query: 251 -VGCWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV---------LNRS-- 295
W+E+++K++ F+ ++ +T E+ KL E+ + M + G++ L+RS
Sbjct: 650 PAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEK 709
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ ++ AVA L+S P G P RV K++ +C H A +F+S I+ RE++++D
Sbjct: 710 ELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINR 769
Query: 352 FHHFKDGKCSCKDAY 366
FHHF+DG CSC D +
Sbjct: 770 FHHFRDGTCSCGDYW 784
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 104/243 (42%), Gaps = 6/243 (2%)
Query: 8 SDVEIPWNLLLKACI-KAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
SDV + WN L+ C+ D+ + ELL +++ + + + IL +C ++G
Sbjct: 173 SDV-VSWNALISGCVLNGHDHRAI-ELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGR 230
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q +M K S +G L+++ ++ +DDA F ++ + W +IS + G
Sbjct: 231 QIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGG 290
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
EA +F + +N TT + LK+ A + ++ E++ I +
Sbjct: 291 RHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHV-V 349
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD--MKLAKYALDKLLE 244
+ ++++ + + + + G + + LS HG+ +KL L K LE
Sbjct: 350 NGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLE 409
Query: 245 LDP 247
DP
Sbjct: 410 PDP 412
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 4/152 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ A +K ++ + + ++N+C ++ G Q A
Sbjct: 75 VSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAM 134
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G N L+++ + G++D A + F+ P+ + +SW +IS V +GH A
Sbjct: 135 VVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRA 194
Query: 132 LDLFKDKQWRYTSMNPTTF--RSALKAYALMG 161
++L Q + + + P F S LKA A G
Sbjct: 195 IELL--LQMKSSGLVPNVFMLSSILKACAGAG 224
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF-KSTPEKNSLSWTFIISA 121
+G Q A G S V N L+ + G +DDA F ++ E+N++SW ++SA
Sbjct: 24 QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSA 83
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
V + +A+ +F + W + + PT F
Sbjct: 84 YVKNDQCGDAIQVFGEMVW--SGIQPTEF 110
>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 877
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 124/375 (33%), Positives = 195/375 (52%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + + +LN+C + G Q A++ KR +S GN L+ ++CG I+DA+LAF
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAF 563
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
S PE+ +SW+ +I HGH AL+LF + N T S L A GLV
Sbjct: 564 SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD 623
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
EA R F SM+E++ I+ +EEHYS M++ LGRAG ++ +E + + P + +W LL
Sbjct: 624 EAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSM-PFQANASVWGALLG 682
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------------GMY------------------ 250
+SRVH D +L K A +KL L+P GM+
Sbjct: 683 ASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKE 742
Query: 251 -VGCWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV---------LNRS-- 295
W+E+++K++ F+ ++ +T E+ KL E+ + M + G++ L+RS
Sbjct: 743 PAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEK 802
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ ++ AVA L+S P G P RV K++ +C H A +F+S I+ RE++++D
Sbjct: 803 ELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINR 862
Query: 352 FHHFKDGKCSCKDAY 366
FHHF+DG CSC D +
Sbjct: 863 FHHFRDGTCSCGDYW 877
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 104/243 (42%), Gaps = 6/243 (2%)
Query: 8 SDVEIPWNLLLKACI-KAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
SDV + WN L+ C+ D+ + ELL +++ + + + IL +C ++G
Sbjct: 266 SDV-VSWNALISGCVLNGHDHRAI-ELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGR 323
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q +M K S +G L+++ ++ +DDA F ++ + W +IS + G
Sbjct: 324 QIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGG 383
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
EA +F + +N TT + LK+ A + ++ E++ I +
Sbjct: 384 RHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHV-V 442
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD--MKLAKYALDKLLE 244
+ ++++ + + + + G + + LS HG+ +KL L K LE
Sbjct: 443 NGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLE 502
Query: 245 LDP 247
DP
Sbjct: 503 PDP 505
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 4/152 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ A +K ++ + + ++N+C ++ G Q A
Sbjct: 168 VSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAM 227
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G N L+++ + G++D A + F+ P+ + +SW +IS V +GH A
Sbjct: 228 VVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRA 287
Query: 132 LDLFKDKQWRYTSMNPTTF--RSALKAYALMG 161
++L Q + + + P F S LKA A G
Sbjct: 288 IELL--LQMKSSGLVPNVFMLSSILKACAGAG 317
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF-KSTPEKNSLSWTFIISA 121
+G Q A G S V N L+ + G +DDA F ++ E+N++SW ++SA
Sbjct: 117 QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSA 176
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
V + +A+ +F + W + + PT F
Sbjct: 177 YVKNDQCGDAIQVFGEMVW--SGIQPTEF 203
>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 188/375 (50%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + + +LN+C + G Q A++ KR ++ GN L+ ++CG I+DADLAF
Sbjct: 506 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAF 565
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P+K +SW+ +I HGH ALD+F+ + N T S L A GLV
Sbjct: 566 SGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVD 625
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
EA F SM+E++ I+ +EEHYS M++ LGRAG ++ +E + + P + +W LL
Sbjct: 626 EAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSM-PFEANAAVWGALLA 684
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------------GMY------------------ 250
+SRVH D +L K A +KL L+P GM+
Sbjct: 685 ASRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKE 744
Query: 251 -VGCWIEIQNKIYEFVSNEELTSEVSD---KLAEIEENMKELGFVLNRSL---------- 296
W+E++++++ F+ ++ D KL E+ + M + G+V N +
Sbjct: 745 PAMSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLHDVDKSEK 804
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ ++ AVA LIS P G P RV K++ +C H A +F+S I+ RE++++D
Sbjct: 805 ELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINR 864
Query: 352 FHHFKDGKCSCKDAY 366
FHHF DG CSC D +
Sbjct: 865 FHHFSDGACSCGDYW 879
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 2/139 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A +K EL + + + ++N+C L G + A
Sbjct: 168 VSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAM 227
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G N L+++ S+ G I A L F P+ + +SW IS V HGH A
Sbjct: 228 VVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHA 287
Query: 132 LDLFKDKQWRYTSMNPTTF 150
L+L Q + + + P F
Sbjct: 288 LELL--LQMKSSGLVPNVF 304
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 2/174 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT--QAQ 69
+ WN + C+ + ELL +++ + +++ IL +C Q
Sbjct: 269 VSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIH 328
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+M K S +G L+++ ++ G +DDA F+ P K+ L W +IS + G
Sbjct: 329 GFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHG 388
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
E+L LF + + +N TT + LK+ A + + + ++ E++ + S
Sbjct: 389 ESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSH 442
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 59 PILL------NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF-KSTPEKN 111
PI+L +G Q A GL V N L+ + G +D+A F ++ ++N
Sbjct: 107 PIVLKCAPDAGLGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRN 166
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
++SW ++SA V + S+A++LF + W N F + A
Sbjct: 167 AVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNA 211
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L +G A++ K GL+ A N L++ S+C A F TP+ +SW+ +++A
Sbjct: 20 LFLGAHIHAHLLKSGLLH--AFRNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTA 77
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
N+ P EAL F+ + R N LK GL
Sbjct: 78 YSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGL 118
>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 128/408 (31%), Positives = 206/408 (50%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I +N ++ A K + E EL I+ +++ +L+ + + G Q A
Sbjct: 443 ISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHAR 502
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL + +V N LI++ SRCG I+ A F+ ++N +SWT II+ HG ++A
Sbjct: 503 VIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQA 562
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+LF N T+ + L A + +GLV E ++ F SM + + P EHY+ MV+
Sbjct: 563 LELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVD 622
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DPG 248
LGR+G E ++FI + P K L+WRT L + RVHG+++L K+A ++E DP
Sbjct: 623 ILGRSGSLSEAIQFINSM-PYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPA 681
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFV---SNEELTSE 273
Y+ GC W+E++NK+++F ++ +E
Sbjct: 682 AYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAE 741
Query: 274 VSDKLAEIEENMKELGFVLN--------------RSLYQTKMK-AVALGLISFPHGMPTR 318
+ D+L + +K+LG+V N + L+Q K AVA GLIS P R
Sbjct: 742 IYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIR 801
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V K++ +CG HSA +++S RE++V+D FHH KDG+CSC + +
Sbjct: 802 VFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 103/232 (44%), Gaps = 4/232 (1%)
Query: 14 WNLLLKACIKAKDY-EMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
W ++ ++ Y E +L + L + ++ L +C N L +G Q +
Sbjct: 343 WTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHA 402
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K G S V N LI++ +R G+IDDA AF EKN +S+ +I A + + EAL
Sbjct: 403 VKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEAL 462
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA 192
+LF + + + + TF S L A +G +G+ ++ + + ++ ++ + ++
Sbjct: 463 ELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS-GLKLNQSVCNALISM 521
Query: 193 LGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
R G E + + + + + W +++ HG A K+LE
Sbjct: 522 YSRCGNIESAFQVFEDMEDRNV--ISWTSIITGFAKHGFATQALELFHKMLE 571
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC---GKIDDAD 101
D +++ ++++C N LL +G Q + + GL VG CLIN+ ++C G + A
Sbjct: 270 DRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAAR 329
Query: 102 LAFKSTPEKNSLSWTFIISARVNH-GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
F + N SWT +I+ V G+ EALDLF+ + N TF S LKA A
Sbjct: 330 KIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACA 387
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRG-LISHPAVGNCLININSRC-GKIDDADL 102
+ Y +C ++VG ++ K G L S VG LI++ + G + A
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFK 226
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
F+ PE+N+++WT +I+ + G+ EA+DLF
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLF 259
>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Brachypodium distachyon]
Length = 814
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 122/412 (29%), Positives = 202/412 (49%), Gaps = 66/412 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF------IDSYSICDILNSCLNPILLNVG 65
+ W ++ C++ E E +QL CG D + + + N ++ +G
Sbjct: 408 VSWTAMITGCVQNGQQE------EALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLG 461
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Q +Y+ + G +S G+ L+++ ++CG +D+A F PE+NS+SW +ISA ++
Sbjct: 462 RQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHY 521
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
G A+ +F+ + TF S L A + GL E + F ME Y I P +EH
Sbjct: 522 GQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEH 581
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
YS +++ LGR G F++V E + G +P + P+IW ++L S R HG+ LA+ A +KL +
Sbjct: 582 YSCVIDTLGRVGRFDKVQEML-GEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSM 640
Query: 246 ---DPGMYV--------------------------------GCWIEIQNKIYEFVSNEE- 269
D YV W+E+++K+Y F SN++
Sbjct: 641 GSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQT 700
Query: 270 --LTSEVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFP 312
+ +E+ D+L + + M + G+ + S Y ++ A+A LI+ P
Sbjct: 701 NPMITEIKDELERLYKEMDKQGYKPDTSCTLQQVDDDIKLESLKYHSERLAIAFALINTP 760
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G P RV+K++ C HSA + MS I+ R+++V+D FHHFKDG CSC D
Sbjct: 761 PGTPIRVMKNLSACVDCHSAIKMMSKIVNRDIIVRDSSRFHHFKDGFCSCGD 812
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
+ +G Q A + GL S VGN LI++ S+CG +D A F + +K +SWT +I+
Sbjct: 357 IGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITG 416
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
V +G EAL LF + S + TF S +KA + + ++G +L + H+
Sbjct: 417 CVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMS- 475
Query: 182 SEEHYSIMVEALGRAGMFEEVLE 204
S S +++ + G +E L+
Sbjct: 476 SVFSGSALLDMYTKCGCLDEALQ 498
>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49170, chloroplastic-like [Cucumis sativus]
Length = 849
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 127/408 (31%), Positives = 206/408 (50%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I +N ++ A K + E EL I+ +++ +L+ + + G Q A
Sbjct: 443 ISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHAR 502
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL + +V N LI++ SRCG I+ A F+ ++N +SWT II+ HG ++A
Sbjct: 503 VIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQA 562
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+LF N T+ + L A + +GLV E ++ F SM + + P EHY+ +V+
Sbjct: 563 LELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVD 622
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DPG 248
LGR+G E ++FI + P K L+WRT L + RVHG+++L K+A ++E DP
Sbjct: 623 ILGRSGSLSEAIQFINSM-PYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPA 681
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFV---SNEELTSE 273
Y+ GC W+E++NK+++F ++ +E
Sbjct: 682 AYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAE 741
Query: 274 VSDKLAEIEENMKELGFVLN--------------RSLYQTKMK-AVALGLISFPHGMPTR 318
+ D+L + +K+LG+V N + L+Q K AVA GLIS P R
Sbjct: 742 IYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIR 801
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V K++ +CG HSA +++S RE++V+D FHH KDG+CSC + +
Sbjct: 802 VFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 103/232 (44%), Gaps = 4/232 (1%)
Query: 14 WNLLLKACIKAKDY-EMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
W ++ ++ Y E +L + L + ++ L +C N L +G Q +
Sbjct: 343 WTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHA 402
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K G S V N LI++ +R G+IDDA AF EKN +S+ +I A + + EAL
Sbjct: 403 VKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEAL 462
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA 192
+LF + + + + TF S L A +G +G+ ++ + + ++ ++ + ++
Sbjct: 463 ELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS-GLKLNQSVCNALISM 521
Query: 193 LGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
R G E + + + + + W +++ HG A K+LE
Sbjct: 522 YSRCGNIESAFQVFEDMEDRNV--ISWTSIITGFAKHGFATQALELFHKMLE 571
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC---GKIDDAD 101
D +++ ++++C N LL +G Q + + GL VG CLIN+ ++C G + A
Sbjct: 270 DRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAAR 329
Query: 102 LAFKSTPEKNSLSWTFIISARVNH-GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
F + N SWT +I+ V G+ EALDLF+ + N TF S LKA A
Sbjct: 330 KIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACA 387
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRG-LISHPAVGNCLININSRC-GKIDDADL 102
+ Y +C ++VG ++ K G L S VG LI++ + G + A
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFK 226
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F+ PE+N+++WT +I+ + G+ EA+DLF D + + T + A A M L
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMEL 286
Query: 163 V 163
+
Sbjct: 287 L 287
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 120/371 (32%), Positives = 195/371 (52%), Gaps = 55/371 (14%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ +L+SC L++G Y+ K GL + V LI++ ++CG +D A F+S
Sbjct: 230 TVLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESM 289
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
+++ +W+ +I A HG + + +F++ + TF L A + GLV E +
Sbjct: 290 SVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGF 349
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
R F SM EVY I P +HY MV+ LGRAG+ E +FI + P K P++WRTLL S
Sbjct: 350 RYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDEL-PIKPTPILWRTLLSSCS 408
Query: 228 VHGDMKLAKYALDKLLELDP---GMYV---------GCW--------------------- 254
HG+++LAK ++++LELD G YV G W
Sbjct: 409 SHGNLELAKQVMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGC 468
Query: 255 --IEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL------------- 296
IE+ N ++EF S + +++ + L E+ + +K +G+V + SL
Sbjct: 469 SSIEVDNVVHEFFSGDGVHYVSTALHRALDELVKELKSVGYVPDTSLVVHPDMEDEEKEI 528
Query: 297 ---YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
Y ++ A++ GL++ P G RV+K++ +CG HSA + +S++I+RE++++D FH
Sbjct: 529 TLRYHSEKLAISFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISSLIDREIILRDVQRFH 588
Query: 354 HFKDGKCSCKD 364
HFKDGKCSC D
Sbjct: 589 HFKDGKCSCGD 599
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 52/117 (44%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y+ +L +C+ G Q K GL +P V LIN+ + C +D A F
Sbjct: 126 DDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVF 185
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
E +S+ II+ P+EAL LF+ Q R N T S L + AL+G
Sbjct: 186 DEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLG 242
>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 187/376 (49%), Gaps = 55/376 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
++ YS +++ C N LL +G Q Q K S VG+ L+++ S+CG ++ A
Sbjct: 215 VNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQV 274
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F P +N W ++ A H H + ++LFK + N TF + L A + GLV
Sbjct: 275 FDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLV 334
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E F M+E IEP+++HY+ +V+ LGRAG EE LE + + P +W LL
Sbjct: 335 DEGKYYFDLMKES-RIEPTDKHYASLVDMLGRAGKLEEALEIVTNM-PIDPTESVWGALL 392
Query: 224 LSSRVHGDMKLAKYALDKLLELDP---GMYVG---------------------------- 252
S +H + +LA +A DK+ EL P GM++
Sbjct: 393 TSCTIHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKK 452
Query: 253 ----CWIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRSL--------- 296
W+E +NK++ F + E E + E+ +KLAE+ E M++ G+V + S
Sbjct: 453 ETGLSWVEERNKVHTFAAGERRHERSKEIYEKLAELGEEMEKAGYVADTSYVLREVDGDE 512
Query: 297 ------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
Y ++ A+A GLI+FP P RV+K++ +CG H+A +FMS R ++V+D
Sbjct: 513 KNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSICTRRVIIVRDNN 572
Query: 351 SFHHFKDGKCSCKDAY 366
FH F+DGKCSC D +
Sbjct: 573 RFHRFEDGKCSCNDYW 588
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 49 ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP 108
ICD+L S + G Q Y+ K GL P V N LIN S+ D+ AF+ +P
Sbjct: 18 ICDLLLSSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSP 77
Query: 109 EKNSLSWTFIISARVNHGHPSEALDLFK 136
+K++ +W+ IIS + P +L+ +
Sbjct: 78 QKSATTWSSIISCFAQNELPWMSLEFLR 105
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 50 CDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE 109
C IL+ C ++G K G + VG+ L+++ ++CG+I A F P
Sbjct: 126 CGILSRC------DIGKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPL 179
Query: 110 KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+N ++W+ ++ G EAL LFK+ + ++N +F + + A
Sbjct: 180 RNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSTVISVCA 228
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 125/407 (30%), Positives = 202/407 (49%), Gaps = 55/407 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + YE ++L + +Q D+ + +L+ C NP L +G Q
Sbjct: 498 ISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGR 557
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+T+ GL +GN LIN+ RCG + DA F S ++ +SWT +I + G +A
Sbjct: 558 ITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKA 617
Query: 132 LDLFKDKQWR-YTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
++LF Q + + +TF S L A GLV E Y++F SME Y + P+ EHY +V
Sbjct: 618 IELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLV 677
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DP 247
LGRA F+E I + P +W TLL + R+HG++ LA++A + L+L +P
Sbjct: 678 GLLGRARRFQEAETLINQM-PFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNP 736
Query: 248 GMYV--------------------------------GCWIEIQNKIYEFVSNEELTSEVS 275
+Y+ WIE+ N I+EF++ + E +
Sbjct: 737 AVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETA 796
Query: 276 DKLAEIEE---NMKELGFV---------LNRSLYQTKM------KAVALGLISFPHGMPT 317
+ AE++ M+E G+ L ++ +T + A+A GLI P G P
Sbjct: 797 EIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPI 856
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
R+ K++ +CG H+A +F+S ++ RE++ +D FH FK+GKCSC+D
Sbjct: 857 RIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCED 903
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + ++L++ P +L+ G + + GL S VG L+ + RCG +D A AF
Sbjct: 228 DKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAF 287
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
K +++ + + +I+A HGH EA + + + ++N TT+ S L A
Sbjct: 288 KGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNA 339
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 63/145 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + +D L +++Q + +L++C N G
Sbjct: 397 ISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHED 456
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G+ S+ + N L+N+ RCG + +A F+ T ++ +SW +I+ HG A
Sbjct: 457 ILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETA 516
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
LF++ Q + TF S L
Sbjct: 517 YKLFQEMQNEELEPDNITFASVLSG 541
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
ILN+C L G +++++ G S +GN LI++ +RCG + A F + P+++
Sbjct: 336 ILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRD 395
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+SW II+ EA+ L+K Q TF L A A
Sbjct: 396 LISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACA 442
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + +L +C LL + A M + G+ + N LIN+ +C + DA F
Sbjct: 26 DRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVF 85
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
K P ++ +SW +IS G +A LF++ Q N T+ S L A
Sbjct: 86 KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTA 137
>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2261; Flags: Precursor
gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 130/412 (31%), Positives = 197/412 (47%), Gaps = 58/412 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N L + ++E +LL I + +++ +L+ N + G Q +
Sbjct: 440 VSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQ 499
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL + V N LI++ S+CG ID A F +N +SWT +I+ HG
Sbjct: 500 VVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRV 559
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+ F N T+ + L A + +GLV E +R F SM E + I+P EHY+ MV+
Sbjct: 560 LETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVD 619
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD---PG 248
L RAG+ + EFI +P + L+WRT L + RVH + +L K A K+LELD P
Sbjct: 620 LLCRAGLLTDAFEFIN-TMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPA 678
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEEL---TSE 273
Y+ GC WIE+ +KI++F + +
Sbjct: 679 AYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQ 738
Query: 274 VSDKLAEIEENMKELGFVLN------------------RSLYQTKMK-AVALGLISFPHG 314
+ D+L + +K G+V + R LYQ K AVA GLIS
Sbjct: 739 IYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKS 798
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P RV K++ +CG H+A +++ST+ RE+V++D FHHFKDGKCSC D +
Sbjct: 799 RPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ +C N VG Q KRGL S+ +V N +I++ + +++DA AF
Sbjct: 372 NHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAF 431
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
+S EKN +S+ + + + +A L + R ++ TF S L A +G +
Sbjct: 432 ESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSI 490
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 12 IPWNLLLKACIKAK-DYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQ 69
+ W L++ C++ E + L+ + GF D +++ + ++C L++G Q
Sbjct: 235 VTWTLMITRCMQMGFPREAIRFFLDMV--LSGFESDKFTLSSVFSACAELENLSLGKQLH 292
Query: 70 AYMTKRGLISHPAVGNCLININSRC---GKIDDADLAFKSTPEKNSLSWTFIISARV-NH 125
++ + GL+ V L+++ ++C G +DD F + + +SWT +I+ + N
Sbjct: 293 SWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNC 350
Query: 126 GHPSEALDLFKDKQWR-YTSMNPTTFRSALKA 156
+EA++LF + + + N TF SA KA
Sbjct: 351 NLATEAINLFSEMITQGHVEPNHFTFSSAFKA 382
Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 12 IPWNLLLKACI--KAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQA 68
+ W+ ++ AC ++ + + +E ++L G + + Y ++ +C N + VG
Sbjct: 132 VSWSAMM-ACYGNNGRELDAIKVFVEFLEL--GLVPNDYCYTAVIRACSNSDFVGVGRVT 188
Query: 69 QAYMTKRG-LISHPAVGNCLININSRC-GKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
++ K G S VG LI++ + ++A F E N ++WT +I+ + G
Sbjct: 189 LGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMG 248
Query: 127 HPSEALDLFKD 137
P EA+ F D
Sbjct: 249 FPREAIRFFLD 259
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 190/375 (50%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS+ +LN+C + G Q ++ K G +S GN L+N+ ++CG I+DA AF
Sbjct: 413 DSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAF 472
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P + +SW+ +I HG+ EAL LFK N T S L A GLV
Sbjct: 473 SRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVA 532
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
EA F SM+ ++ IEP +EHY+ M++ LGRAG E +E + + P + L+W LL
Sbjct: 533 EAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKM-PFQANALVWGALLG 591
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------------GMYVGC--------------- 253
++R+H ++ L + A + LL L+P GM+
Sbjct: 592 AARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKE 651
Query: 254 ----WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV---------LNRS-- 295
W+E+++K+Y F+ + ++E+ KL E+ + +K+ G+V + RS
Sbjct: 652 PGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEIDLHDVERSEK 711
Query: 296 ---LYQTKMK-AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
LY K AVA GLI+ P G P RV K++ +C H+ +F+S I+ RE++V+D
Sbjct: 712 EQLLYHHSEKLAVAFGLIATPPGAPIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTNR 771
Query: 352 FHHFKDGKCSCKDAY 366
FHHF++G CSC + +
Sbjct: 772 FHHFREGSCSCGEYW 786
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ C+ + + ELL + + +++ L +C L +G Q +
Sbjct: 178 VSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSS 237
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + S +G LI++ S+C +DDA L FK PE++ ++W +IS + EA
Sbjct: 238 LIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEA 297
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALM 160
LF N TT + LK+ A +
Sbjct: 298 ASLFPLMHTEGIGFNQTTLSTVLKSIAAL 326
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 65/151 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L + + + L + L + +S+ ++N C G + Y
Sbjct: 77 VSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGY 136
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G S N L+++ ++ G ++DA F + + +SW II+ V H + A
Sbjct: 137 LIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRA 196
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
L+L ++ N T SALKA A M L
Sbjct: 197 LELLREMNKSGMCPNMFTLSSALKACAGMAL 227
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ +L +C L +G Q + G S V N L+ + ++CG DA F
Sbjct: 9 NEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLF 68
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
+ P+++ +SW + S V+ EA+ LF D
Sbjct: 69 DAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHD 101
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q A K G V N LI+ +CG ++DA F+ +P + + +T +++A G
Sbjct: 334 QIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDG 393
Query: 127 HPSEALDLFKDKQWRYTSMNPTTF 150
EAL L+ + Q R + P +F
Sbjct: 394 QGEEALRLYLEMQDR--GIKPDSF 415
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 122/375 (32%), Positives = 185/375 (49%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + +LN+C N G Q ++ K G + GN L+N+ ++CG IDDA AF
Sbjct: 560 DRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAF 619
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
E+ +SW+ +I HGH +AL LF S N T S L A GLV
Sbjct: 620 SELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVT 679
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
EA F SMEE++ +P +EHY+ M++ LGRAG E +E + + P + +W LL
Sbjct: 680 EAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKM-PFEANASVWGALLG 738
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
++R+H D++L + A + L L+P G +V
Sbjct: 739 AARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKE 798
Query: 252 --GCWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV---------LNRS-- 295
WIE+++K+Y F+ + + E+ KL E+ + M + G+V + +S
Sbjct: 799 PGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEK 858
Query: 296 ---LYQTKMK-AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
LY K AVA GLI+ P G P RV K++ +C H+A +++ I+ RE++V+D
Sbjct: 859 ELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINR 918
Query: 352 FHHFKDGKCSCKDAY 366
FHHFKDG CSC D +
Sbjct: 919 FHHFKDGSCSCGDYW 933
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 109/243 (44%), Gaps = 7/243 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ C+ + +E ELL +++ + +++ L +C L +G Q +
Sbjct: 325 VSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSS 384
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + S V L+++ S+C ++DA +AF PEK+ ++W IIS + EA
Sbjct: 385 LMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEA 444
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF-LSMEEVYHIEPSEEHYSI-- 188
L LF + N TT + LK+ A + +V ++ LS++ +H + Y +
Sbjct: 445 LSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFH----SDIYVVNS 500
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248
++++ G+ E+ + G L + G+ L + + +EL P
Sbjct: 501 LIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPD 560
Query: 249 MYV 251
+V
Sbjct: 561 RFV 563
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%)
Query: 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK 105
S S +L+ C L G Q A++TK GL P++ N LIN+ S+C A
Sbjct: 56 SVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVD 115
Query: 106 STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
+ E + +SW+ +IS +G AL F + N TF S LKA +++
Sbjct: 116 ESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIV 170
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ +S+ ++N+C + G Y+ K G P N L+++ ++ G + DA F
Sbjct: 257 NEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVF 316
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
+ + + +SW +I+ V H H +AL+L + N T SALKA A MGL
Sbjct: 317 EKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGL 374
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ +L +C L +G Q + G V N L+ + ++C + D+ F
Sbjct: 156 NEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLF 215
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
PE+N +SW + S V EA+ LF + + + P F + A GL
Sbjct: 216 DEIPERNVVSWNALFSCYVQIDFCGEAVGLF--YEMVLSGIKPNEFSLSSMVNACTGL 271
>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
Length = 906
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 122/375 (32%), Positives = 185/375 (49%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + +LN+C N G Q ++ K G + GN L+N+ ++CG IDDA AF
Sbjct: 533 DRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAF 592
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
E+ +SW+ +I HGH +AL LF S N T S L A GLV
Sbjct: 593 SELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVT 652
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
EA F SMEE++ +P +EHY+ M++ LGRAG E +E + + P + +W LL
Sbjct: 653 EAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKM-PFEANASVWGALLG 711
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
++R+H D++L + A + L L+P G +V
Sbjct: 712 AARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKE 771
Query: 252 --GCWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV---------LNRS-- 295
WIE+++K+Y F+ + + E+ KL E+ + M + G+V + +S
Sbjct: 772 PGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEK 831
Query: 296 ---LYQTKMK-AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
LY K AVA GLI+ P G P RV K++ +C H+A +++ I+ RE++V+D
Sbjct: 832 ELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINR 891
Query: 352 FHHFKDGKCSCKDAY 366
FHHFKDG CSC D +
Sbjct: 892 FHHFKDGSCSCGDYW 906
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%)
Query: 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK 105
S S +L+ C L G Q A++TK GL P++ N LIN+ S+C A
Sbjct: 56 SVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVD 115
Query: 106 STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
+ E + +SW+ +IS +G AL F + N TF S LKA +++
Sbjct: 116 ESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIV 170
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 99/243 (40%), Gaps = 34/243 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ C+ + +E ELL +++ Q +
Sbjct: 325 VSWNAVIAGCVLHEHHEQALELLGQMK---------------------------RQLHSS 357
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + S V L+++ S+C ++DA +AF PEK+ ++W IIS + EA
Sbjct: 358 LMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEA 417
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF-LSMEEVYHIEPSEEHYSI-- 188
L LF + N TT + LK+ A + +V ++ LS++ +H + Y +
Sbjct: 418 LSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFH----SDIYVVNS 473
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248
++++ G+ E+ + G L + G+ L + + +EL P
Sbjct: 474 LIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPD 533
Query: 249 MYV 251
+V
Sbjct: 534 RFV 536
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 13/148 (8%)
Query: 4 CSLISDVEIPWNLLLKACIKA------------KDYEMVHELLERIQLCCGFIDSYSICD 51
C L+ D + +NLL + + A +D E + +E + GF + ++
Sbjct: 380 CDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGF-NQTTLST 438
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
IL S +++V Q K G S V N LI+ +C ++DA+ F+ +
Sbjct: 439 ILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGD 498
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQ 139
+S+T +I+A +G EAL LF + Q
Sbjct: 499 LVSFTSMITAYAQYGQGEEALKLFLEMQ 526
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ +S+ ++N+C + G Y+ K G P N L+++ ++ G + DA F
Sbjct: 257 NEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVF 316
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKD-KQWRYTSMNPTTFRSALKAYALMGLV 163
+ + + +SW +I+ V H H +AL+L K+ ++S+ S L + +GLV
Sbjct: 317 EKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDL--FVSVGLV 374
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ +L +C L +G Q + G V N L+ + ++C + D+ F
Sbjct: 156 NEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLF 215
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
PE+N +SW + S V EA+ LF + + + P F + A GL
Sbjct: 216 DEIPERNVVSWNALFSCYVQXDFCGEAVGLF--YEMVLSGIKPNEFSLSSMVNACTGL 271
>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
Length = 370
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 122/368 (33%), Positives = 183/368 (49%), Gaps = 54/368 (14%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
IL +C + L G Q A + K G +V N L+++ +CG+I+DA F E +
Sbjct: 4 ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPD 63
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
SW +IS HG EA+ LF+ N TF L + GLV E F
Sbjct: 64 VASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFD 123
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231
SM + I P EHYS MV+ GRAG +E L FI + P + +W +LL + RVHG+
Sbjct: 124 SMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQM-PVEPNASVWGSLLGACRVHGN 182
Query: 232 MKLAKYALDKLLEL---DPGMYV-------------------------------GC-WIE 256
++LA+ A+++L+EL +PG YV GC WIE
Sbjct: 183 IELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIE 242
Query: 257 IQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGFVLNRSL---------------YQ 298
+QNK++ F+ S+ E+ + L + MK G++ N + +
Sbjct: 243 VQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHH 302
Query: 299 TKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDG 358
++ A+A G+IS P G RV+K++ +CG H+A +F+S I+ RE+V++D FHHFKDG
Sbjct: 303 SEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFKDG 362
Query: 359 KCSCKDAY 366
+CSC D +
Sbjct: 363 QCSCGDYW 370
>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 997
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 131/409 (32%), Positives = 195/409 (47%), Gaps = 58/409 (14%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDIL--NSCLNPILLNVGTQA 68
++ W L+ CI+ + E + +++L D ++I + +SCL L G Q
Sbjct: 590 DVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTA--LEQGRQI 647
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A K S P VG L+++ ++CG IDDA FK N +W ++ HG
Sbjct: 648 HANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEG 707
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
EAL LFK + + TF L A + GLV EAY+ SM Y I+P EHYS
Sbjct: 708 KEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSC 767
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP- 247
+ +ALGRAG+ +E I + + ++RTLL + RV GD + K KLLEL+P
Sbjct: 768 LADALGRAGLVKEAENLIDSM-SMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPL 826
Query: 248 ---------GMYVGC-------------------------WIEIQNKIYEFVSNEE---L 270
MY WIE++NKI+ FV ++
Sbjct: 827 DSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQ 886
Query: 271 TSEVSDKLAEIEENMKELGFV--------------LNRSLYQTKMK-AVALGLISFPHGM 315
T + K+ ++ ++K+ G+V R+LY K AVA GL+S P
Sbjct: 887 TELIYKKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPST 946
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
P RVIK++ +CG H+A +++S + +RE+V++D FH FKDG CSC D
Sbjct: 947 PIRVIKNLRVCGDCHNAMKYISKVYDREIVLRDANRFHRFKDGICSCGD 995
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 2/147 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ ++ D EL + D +++ +L +C +N G Q AY
Sbjct: 490 VAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAY 549
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G V + ++++ +CG + A AF S P + ++WT +IS + +G A
Sbjct: 550 AIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERA 609
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L +F Q R + P F A A A
Sbjct: 610 LHVF--SQMRLMGVLPDEFTIATLAKA 634
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 12 IPWNLLLKACIKAKD--YEMVHE--LLERI-QLCCGFIDSYSICDILNSCLNPILLNVGT 66
+ WN +L A ++ + E V E LL RI + + ++ +L CL+ +
Sbjct: 113 VSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASE 172
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Y K GL V L+NI + GK+ + + F+ P ++ + W ++ A + G
Sbjct: 173 SFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMG 232
Query: 127 HPSEALDL 134
EA+DL
Sbjct: 233 FKEEAIDL 240
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 124/408 (30%), Positives = 198/408 (48%), Gaps = 55/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ ++ + + + + +Q D + +LN+C +P L G + A
Sbjct: 575 VSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHAL 634
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+T+ L VG LI++ ++CG IDDA L F + P+KN SWT +I+ HG EA
Sbjct: 635 ITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEA 694
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+LF Q + TF AL A A GL+ E F SM++ ++IEP EHY MV+
Sbjct: 695 LELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKD-FNIEPRMEHYGCMVD 753
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
GRAG+ E +EFI + K +W LL + +VH D++LA+ K LELDP G
Sbjct: 754 LFGRAGLLHEAVEFINKM-QVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDG 812
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEEL---TSE 273
+YV WIE+ +++ F S+++ E
Sbjct: 813 VYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEE 872
Query: 274 VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
+ +L + MK+LG+V + + ++ A+A GL+ P P
Sbjct: 873 IHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHALCHHSERLAIAYGLLKTPPLTPIV 932
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +CG H+A + +S I +R+++ +D FHHFKDG CSC D +
Sbjct: 933 ISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFKDGVCSCGDFW 980
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 109/231 (47%), Gaps = 3/231 (1%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WNLLL ++ + YE L E++ D Y+ +LN+C + ++ G + + +
Sbjct: 173 WNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLIL 232
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
G + VG LIN++ +CG +DDA F + P ++ ++WT +I+ H +A +
Sbjct: 233 NAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACN 292
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF+ + + F S LKA + + R+ M+EV ++ + ++
Sbjct: 293 LFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEV-GLDTEIYVGTALLSMY 351
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+ G E+ LE + +V G+ + W ++ HG M+ A +K++E
Sbjct: 352 TKCGSMEDALE-VFNLVKGRNV-VSWTAMIAGFAQHGRMEEAFLFFNKMIE 400
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A ++ + Y+ + + DS + ILN C +P L +G Q+
Sbjct: 474 VAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSL 533
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G S + N L+++ CG + A F PE++ +SW II+ V HG A
Sbjct: 534 IIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFA 593
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
D FK Q + TF L A A + E RL
Sbjct: 594 FDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRL 631
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W ++ + + ++ L + ++ D + +L +C +P L G + A
Sbjct: 272 ITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHAR 331
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M + GL + VG L+++ ++CG ++DA F +N +SWT +I+ HG EA
Sbjct: 332 MKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEA 391
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
F N TF S L A
Sbjct: 392 FLFFNKMIESGIEPNRVTFMSILGA 416
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
IL +C P L G Q + K G I+ V L+++ ++CG + DA F+ ++N
Sbjct: 413 ILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQN 472
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
++W +I+A V H A+ F+ + +TF S L
Sbjct: 473 VVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSIL 515
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 199/410 (48%), Gaps = 59/410 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ ++ ++ + + +Q D + +LN+C +P L G + A
Sbjct: 581 VSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHAL 640
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+T+ VG LI++ ++CG I+DA F P+KN SWT +I+ HG EA
Sbjct: 641 ITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEA 700
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+LF Q + TF AL A A GL+ E F SM+E ++IEP EHY MV+
Sbjct: 701 LELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMVD 759
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
GRAG+ E +EF I+ ++ P +W LL + +VH +++LA+ A K LELDP
Sbjct: 760 LFGRAGLLNEAVEF---IIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPND 816
Query: 248 -GMYV--------------------------------GCWIEIQNKIYEFVSNEEL---T 271
G++V WIE+ K++ F S+++ T
Sbjct: 817 NGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQT 876
Query: 272 SEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMP 316
E+ +L + M++LG+V + Y ++ A+ GL+ P P
Sbjct: 877 EEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTP 936
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +CG H+A +F+S I +R+++ +D FHHFKDG CSC D +
Sbjct: 937 IVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 106/233 (45%), Gaps = 7/233 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WNLLL ++ YE +L E++ D + +LN+C + ++ G + +
Sbjct: 179 WNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLIL 238
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G + VG LIN++ +CG I DA F + P ++ ++WT +I+ HG +A +
Sbjct: 239 KAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACN 298
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY--SIMVE 191
LF+ + + F S L+A + + ++ M+EV E Y + ++
Sbjct: 299 LFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEV---GWDTEIYVGTAILS 355
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+ G E+ LE +V G+ + W ++ HG + A +K++E
Sbjct: 356 MYTKCGSMEDALEVFD-LVKGRNV-VSWTAMIAGFAQHGRIDEAFLFFNKMIE 406
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 111/282 (39%), Gaps = 37/282 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A ++ + Y+ + + +S + ILN C + L +G
Sbjct: 480 VAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFL 539
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL S V N L+++ CG + A F P+++ +SW II+ V HG A
Sbjct: 540 IMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVA 599
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL------------------FLSM 173
D FK Q + TF L A A + E RL +SM
Sbjct: 600 FDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISM 659
Query: 174 ----------EEVYHIEPSEEHYSI--MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221
+V+H P + YS M+ + G +E LE + + P W T
Sbjct: 660 YTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKP-DWIT 718
Query: 222 LL--LSSRVHGDM---KLAKYALDKLLELDPGM-YVGCWIEI 257
+ LS+ H + L + K ++P M + GC +++
Sbjct: 719 FVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDL 760
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 63/145 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + ++ L +R++ D + +L +C +P L G + A
Sbjct: 278 VTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHAR 337
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M + G + VG ++++ ++CG ++DA F +N +SWT +I+ HG EA
Sbjct: 338 MKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEA 397
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
F N TF S L A
Sbjct: 398 FLFFNKMIESGIEPNRVTFMSILGA 422
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
IL +C +P L G Q Q ++ + G S V L+++ ++CG + DA F+ ++N
Sbjct: 419 ILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQN 478
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
++W +I+A V H AL F+ N +TF S L
Sbjct: 479 VVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSIL 521
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 2/157 (1%)
Query: 4 CSLISDVEIPW--NLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL 61
C + +D++ N +L KA + ++LER+ I + +L C+
Sbjct: 66 CVVFADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKN 125
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G + ++ K G+ + N LIN+ ++CG A F EK+ SW ++
Sbjct: 126 LGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGG 185
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
V HG EA L + + TF S L A A
Sbjct: 186 YVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACA 222
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 199/410 (48%), Gaps = 59/410 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ ++ ++ + + +Q D + +LN+C +P L G + A
Sbjct: 581 VSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHAL 640
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+T+ VG LI++ ++CG I+DA F P+KN SWT +I+ HG EA
Sbjct: 641 ITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEA 700
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+LF Q + TF AL A A GL+ E F SM+E ++IEP EHY MV+
Sbjct: 701 LELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMVD 759
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
GRAG+ E +EF I+ ++ P +W LL + +VH +++LA+ A K LELDP
Sbjct: 760 LFGRAGLLNEAVEF---IIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPND 816
Query: 248 -GMYV--------------------------------GCWIEIQNKIYEFVSNEEL---T 271
G++V WIE+ K++ F S+++ T
Sbjct: 817 NGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQT 876
Query: 272 SEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMP 316
E+ +L + M++LG+V + Y ++ A+ GL+ P P
Sbjct: 877 EEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTP 936
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +CG H+A +F+S I +R+++ +D FHHFKDG CSC D +
Sbjct: 937 IVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 106/233 (45%), Gaps = 7/233 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WNLLL ++ YE +L E++ D + +LN+C + ++ G + +
Sbjct: 179 WNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLIL 238
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G + VG LIN++ +CG I DA F + P ++ ++WT +I+ HG +A +
Sbjct: 239 KAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACN 298
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY--SIMVE 191
LF+ + + F S L+A + + ++ M+EV E Y + ++
Sbjct: 299 LFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEV---GWDTEIYVGTAILS 355
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+ G E+ LE +V G+ + W ++ HG + A +K++E
Sbjct: 356 MYTKCGSMEDALEVFD-LVKGRNV-VSWTAMIAGFAQHGRIDEAFLFFNKMIE 406
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 111/282 (39%), Gaps = 37/282 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A ++ + Y+ + + +S + ILN C + L +G
Sbjct: 480 VAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFL 539
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL S V N L+++ CG + A F P+++ +SW II+ V HG A
Sbjct: 540 IMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVA 599
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL------------------FLSM 173
D FK Q + TF L A A + E RL +SM
Sbjct: 600 FDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISM 659
Query: 174 ----------EEVYHIEPSEEHYSI--MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221
+V+H P + YS M+ + G +E LE + + P W T
Sbjct: 660 YTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKP-DWIT 718
Query: 222 LL--LSSRVHGDM---KLAKYALDKLLELDPGM-YVGCWIEI 257
+ LS+ H + L + K ++P M + GC +++
Sbjct: 719 FVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDL 760
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 63/145 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + ++ L +R++ D + +L +C +P L G + A
Sbjct: 278 VTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHAR 337
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M + G + VG ++++ ++CG ++DA F +N +SWT +I+ HG EA
Sbjct: 338 MKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEA 397
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
F N TF S L A
Sbjct: 398 FLFFNKMIESGIEPNRVTFMSILGA 422
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
IL +C +P L G Q Q ++ + G S V L+++ ++CG + DA F+ ++N
Sbjct: 419 ILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQN 478
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
++W +I+A V H AL F+ N +TF S L
Sbjct: 479 VVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSIL 521
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 2/157 (1%)
Query: 4 CSLISDVEIPW--NLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL 61
C + +D++ N +L KA + ++LER+ I + +L C+
Sbjct: 66 CVVFADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKN 125
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G + ++ K G+ + N LIN+ ++CG A F EK+ SW ++
Sbjct: 126 LGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGG 185
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
V HG EA L + + TF S L A A
Sbjct: 186 YVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACA 222
>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
Length = 770
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 183/378 (48%), Gaps = 62/378 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ IL+ C + + L G Q A K G +S V + L+N+ ++CG I+DA AF
Sbjct: 392 DLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEDATKAF 451
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ ++WT +IS HG P EA+ LF+D ++ N TF L A + GL
Sbjct: 452 VEMSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRPNEITFVCVLSACSYAGLAE 511
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK--GIVPGKLCPLIWRTL 222
+A F M+E Y IEP +HY MV+ R G ++ FI+ G P + IW +L
Sbjct: 512 KAEHYFDMMKEEYKIEPIVDHYGCMVDMFVRLGRLDDAFAFIRRTGFEPNE---AIWSSL 568
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP----------GMYVG-------------------- 252
+ R HG+M+LA YA D+L+EL P MY+
Sbjct: 569 VAGCRSHGNMELAFYAADRLIELRPKGIETYVLLLNMYISNERWHDVARVRKLMKQEGLG 628
Query: 253 -----CWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQ--------- 298
WI I++K+Y F +N++ T E+SD+L ++ EN+ E + YQ
Sbjct: 629 VLMDRSWITIKDKVYFFKANDK-THELSDELYQLLENLLEKAKTIGYEPYQSAELSDSED 687
Query: 299 ------------TKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVV 346
++ AVALGL+ P G RV K++ MC HS+ +F S + RE+VV
Sbjct: 688 DKKPPAGSVRHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKFFSLLANREIVV 747
Query: 347 KDPGSFHHFKDGKCSCKD 364
+D H FKDG+CSC D
Sbjct: 748 RDSKRLHKFKDGRCSCGD 765
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 13/133 (9%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDS------YSICDILNSCLNPILLNVG 65
+ W L+ Y + +LLE +++ +++ Y++ +LN+C ++G
Sbjct: 145 VTWTALITG------YTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNADLG 198
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+Q Y K +S ++GN L + ++ G ++ A AF+ P+KN ++WT +ISA
Sbjct: 199 SQVHGYTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVITWTTMISACAED 258
Query: 126 GHPSE-ALDLFKD 137
+ +E L LF D
Sbjct: 259 ENYTELGLTLFLD 271
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L+ C+ L +M K G + V L+N RCG DA F PEKN
Sbjct: 84 LLHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMPEKN 143
Query: 112 SLSWTFIISARVNHGHPSEALDLF 135
++WT +I+ + EAL++F
Sbjct: 144 VVTWTALITGYTVNSQLLEALEVF 167
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQA 70
I W ++ AC + ++Y + L L G + + +++ +++ C + LN+G Q QA
Sbjct: 246 ITWTTMISACAEDENYTELGLTLFLDMLMDGVLPNEFTLTSVMSLCGTRLDLNLGKQVQA 305
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
+ K G ++ V N + + R G+ D+A F+ + + ++W +IS
Sbjct: 306 FCFKIGCQTNIPVKNSTMYLYLRKGETDEAMRFFEEMDDVSIITWNAMISG 356
>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
Length = 440
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 122/410 (29%), Positives = 200/410 (48%), Gaps = 58/410 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W L+ C+ YE L +++ D I +L++C +L G Q A
Sbjct: 34 ISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHAN 93
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K GL S +V N L+++ ++CG I+DA+ F S ++ ++WT +I +G E+
Sbjct: 94 FLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRES 153
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+ + B + TF L A + GLV F SMEEVY I+P EHY+ M++
Sbjct: 154 LNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMID 213
Query: 192 ALGRAGMFEEVLEFIK--GIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249
LGR+G E E + + P +W+ LL + RVHG+++L + A + L EL+P
Sbjct: 214 LLGRSGKLMEAKELLNQMAVQPD---ATVWKALLAACRVHGNVELGERAANNLFELEPKN 270
Query: 250 YV----------------------------------GC-WIEIQNKIYEFVSNEE---LT 271
V GC WIE+ +K++ F+S + T
Sbjct: 271 AVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRT 330
Query: 272 SEVSDKLAEIEENMKELGFV--LNRSL-------------YQTKMKAVALGLISFPHGMP 316
+E+ K+ EI +KE G+V +N +L Y ++ AVA GL++ P G P
Sbjct: 331 AEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAP 390
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+ K++ +CG H+A +++S + R ++++D FHHF++G CSC D +
Sbjct: 391 IRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACSCSDYW 440
Score = 37.7 bits (86), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
V N L+++ ++ G D A F+ +K+ +SWT +++ V++G EAL LF
Sbjct: 4 VNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLF 56
>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
Length = 723
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 126/408 (30%), Positives = 204/408 (50%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N ++ A K+ + E EL I+ +++++ +L+ + + G Q +
Sbjct: 317 VSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSR 376
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G S+ + N LI++ SRCG I+ A F + N +SWT +I+ HG + A
Sbjct: 377 ILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRA 436
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+ F S N T+ + L A + +GL+ E + F SM+ + I P EHY+ +V+
Sbjct: 437 LETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVD 496
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DPG 248
LGR+G EE +E + + P K L+ RT L + RVHG+M L K+A + +LE DP
Sbjct: 497 LLGRSGHLEEAMELVNSM-PFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPA 555
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFV---SNEELTSE 273
Y+ GC WIE++NK+++F ++ E
Sbjct: 556 AYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQE 615
Query: 274 VSDKLAEIEENMKELG------FVLN--------RSLYQTKMK-AVALGLISFPHGMPTR 318
+ D+L ++ +KELG FVL+ + L+Q K AVA G IS P R
Sbjct: 616 IYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIAVAYGFISTSTSRPIR 675
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V K++ +CG H+A ++ S + +E+V++D FHHFKDG CSC D +
Sbjct: 676 VFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW 723
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 109/237 (45%), Gaps = 10/237 (4%)
Query: 12 IPWNLLLKACIKAK--DYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGTQ 67
+ W ++ +++ D E + LE +Q G + + ++ +L +C N + +G Q
Sbjct: 215 MSWTAIITGYVQSGGCDREAIELFLEMVQ---GQVKPNHFTFSSVLKACANLSDIWLGEQ 271
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
A + K L S VGN LI++ SRCG +++A AF EKN +S+ I++A +
Sbjct: 272 VYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLN 331
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
EA +LF + + T +N TF S L + +G +G+ ++ + + + + +
Sbjct: 332 SEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKS-GFKSNLHICN 390
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
++ R G E + + G + + W +++ HG A K+LE
Sbjct: 391 ALISMYSRCGNIEAAFQVFNEMGDGNV--ISWTSMITGFAKHGFATRALETFHKMLE 445
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC---GKIDDAD 101
D +++ ++++C LL++G Q + K GL VG L+++ ++C G +DDA
Sbjct: 144 DRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDAR 203
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGH-PSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
F P N +SWT II+ V G EA++LF + N TF S LKA A
Sbjct: 204 KVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACA 261
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 6/156 (3%)
Query: 12 IPWNLLLKA-CIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQ 69
+ W+ L+ K +E + + ++ CGF + Y + +C N +++G
Sbjct: 8 VSWSALISCYANNEKAFEAISAFFDMLE--CGFYPNEYCFTGVFRACSNKENISLGKIIF 65
Query: 70 AYMTKRGLI-SHPAVGNCLININSRC-GKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
++ K G S VG LI++ + G ++ A F P++N ++WT +I+ G
Sbjct: 66 GFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGF 125
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
+A+DLF D + T + A A MGL+
Sbjct: 126 SRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLL 161
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 194/373 (52%), Gaps = 55/373 (14%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ +L+SC L++G Y+ K G V LI++ ++CG +DDA F++
Sbjct: 224 TMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENM 283
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
+++ +W+ +I A HGH +A+ LFK+ + T + TF L A + GLV E +
Sbjct: 284 AVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGF 343
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
F M + Y + P +HY MV+ LGRAG EE EFI G+ P + P++WRTLL +
Sbjct: 344 EYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGL-PIRPTPILWRTLLSACG 402
Query: 228 VHGDMKLAKYALDKLLELDP---GMYV---------GCW--------------------- 254
HG+++L K ++++ ELD G Y+ G W
Sbjct: 403 SHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGC 462
Query: 255 --IEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRSL------------- 296
+E+ N ++EF S + +++++ L E+ + +K +G+V N SL
Sbjct: 463 SSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEV 522
Query: 297 ---YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
Y ++ A+ GL++ P G RV+K++ +CG HSA + +S I +R+++++D FH
Sbjct: 523 TLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQRFH 582
Query: 354 HFKDGKCSCKDAY 366
HFKDGKCSC+D +
Sbjct: 583 HFKDGKCSCEDYW 595
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F D Y+ +L +C + L G Q K GL + V LIN+ + C ++D A
Sbjct: 118 FPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARR 177
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
F E +++ +I+ P+EAL LF++ Q R T S L + AL+G
Sbjct: 178 VFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLG 236
>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Brachypodium distachyon]
Length = 770
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 124/377 (32%), Positives = 181/377 (48%), Gaps = 60/377 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ IL+ C + L G Q A K G +S V + L+N+ ++CG I+ A AF
Sbjct: 392 DLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYATKAF 451
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P + ++WT +IS HG P +A+ LF+D N TF S L A + GLV
Sbjct: 452 VEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNEITFVSLLSACSYAGLVE 511
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFI--KGIVPGKLCPLIWRTL 222
EA R F M+ YHIEP +HY M++ R G ++ FI KG P + IW +L
Sbjct: 512 EAMRYFDMMQNEYHIEPLMDHYGCMIDMFVRLGRLDDAYAFIKRKGFEPNE---AIWSSL 568
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP----------GMYVGC------------------- 253
+ R HG+M+LA YA D+LLEL P MY+
Sbjct: 569 VAGCRSHGNMELAFYAADRLLELKPKVVETYVLLLNMYISTGRWRDVARVRKLSKHEDLG 628
Query: 254 ------WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGF--VLNRSLYQTKMK 302
WI I++K+Y F +++ ++E+ L + E K +G+ N LY ++
Sbjct: 629 ILRDRSWITIRDKVYFFKADDRSHPQSTELYQLLETLLEKAKAIGYEPYQNTELYDSEED 688
Query: 303 ---------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
AVALGL+ P G+ R+ K++ MC HS+ +F S + RE+VV+
Sbjct: 689 GKPAAGSLKHHSERLAVALGLLKAPPGVTVRITKNITMCRDCHSSIKFFSLLANREIVVR 748
Query: 348 DPGSFHHFKDGKCSCKD 364
D H FKDG+CSC D
Sbjct: 749 DSKRLHKFKDGRCSCGD 765
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
+ Y++ +L++C+ +++G Q Y K G S ++GN L + ++ G ++
Sbjct: 176 YPSDYTLGGMLSACVASHNIDLGKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIR 235
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSE-ALDLFKD 137
AFK P+KN ++WT +ISA + +E L+LF D
Sbjct: 236 AFKRIPDKNVITWTTMISACAEDENYTELGLNLFLD 271
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L+ C+ L +M K G I V L+N+ RCG DA F PEKN
Sbjct: 84 LLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMPEKN 143
Query: 112 SLSWTFIISARVNHGHPSEALDLFKD--KQWRYTS 144
++WT +I+ + P AL++F + K RY S
Sbjct: 144 VVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPS 178
>gi|359481819|ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
Length = 977
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 119/365 (32%), Positives = 180/365 (49%), Gaps = 44/365 (12%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
++ ++ ++ C N LL +G Q K S VG+ LI++ S+CG I+DA L
Sbjct: 109 VNDFTFSSVVRVCGNSTLLELGKQIHGLCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLV 168
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F P +N W ++ A H H +A DLFK + N TF L A + GLV
Sbjct: 169 FHEIPIRNLGMWNAMLIACAQHAHTEKAFDLFKQMEGVGMKPNFITFLCVLYACSHAGLV 228
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ F M+E Y IEP +HY+ MV+ LGRAG ++ + IK + P + +W LL
Sbjct: 229 EKGQFYFELMKE-YGIEPGAQHYASMVDLLGRAGKLKDAVSIIKKM-PMEPTESVWGALL 286
Query: 224 LSSRVHGDMKLAKYALDKLLELDP-----GMY------------------VG-CWIEIQN 259
R+HGD +LA + D++ EL P G Y G W+E N
Sbjct: 287 TGCRIHGDTELASFVADRVFELGPVSSAAGRYEEAARARKMLRDQGVKKETGLSWVEEGN 346
Query: 260 KIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL---------------YQTKM 301
+I+ F + + T ++ KL E+ E M+ G++ + S Y ++
Sbjct: 347 RIHTFAAGDRSHPYTKDIYKKLEELGEEMERAGYIADTSFVLQEVDGEEKNQTIRYHSER 406
Query: 302 KAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCS 361
A+A GLISFP P RV+K++ +CG H+A +FMS R ++V+D FH F+DG CS
Sbjct: 407 LAIAFGLISFPPERPIRVMKNLRVCGDCHTAIKFMSKCCGRTIIVRDNNRFHRFEDGNCS 466
Query: 362 CKDAY 366
C+D +
Sbjct: 467 CRDYW 471
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F + C IL+ C ++G ++ K G VG+ ++++ ++CG+I DA
Sbjct: 13 FPSATKACGILSRC------DIGQSVHSFAVKTGYDCDVFVGSSMVDMYAKCGEIGDARK 66
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALK 155
F P++N +SW+ +I G EAL LFK +N TF S ++
Sbjct: 67 MFDEMPDRNVVSWSGMIYGYSQMGEDEEALRLFKQALIEDLDVNDFTFSSVVR 119
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/366 (32%), Positives = 186/366 (50%), Gaps = 55/366 (15%)
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
L+SC L++G Y+ K G + V LI++ ++CG +DDA FK P +++
Sbjct: 243 LSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDT 302
Query: 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS 172
+W+ +I A HGH S+A+ + ++ + + TF L A + GLV E Y F S
Sbjct: 303 QAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHS 362
Query: 173 MEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDM 232
M Y I PS +HY M++ LGRAG EE +FI + P K P++WRTLL S HG++
Sbjct: 363 MTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDEL-PIKPTPILWRTLLSSCSSHGNV 421
Query: 233 KLAKYALDKLLELDP---GMYV---------GCW-----------------------IEI 257
++AK + ++ ELD G YV G W IE+
Sbjct: 422 EMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEV 481
Query: 258 QNKIYEFVSNEELTSEVSDKLAEIEENMKEL---GFVLNRSL----------------YQ 298
N ++EF S + + S + ++E +KEL G+V + SL Y
Sbjct: 482 NNVVHEFFSGDGVHSTSTILHHALDELVKELKLAGYVPDTSLVFYADIEDEEKEIVLRYH 541
Query: 299 TKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDG 358
++ A+ GL++ P G RV+K++ +C H+A +F+S I R+++++D FHHFKDG
Sbjct: 542 SEKLAITYGLLNTPPGTTIRVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDG 601
Query: 359 KCSCKD 364
KCSC D
Sbjct: 602 KCSCGD 607
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Query: 39 LCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKI 97
LC G + D Y+ +L +C L G Q K G+ + V LIN+ + C +
Sbjct: 127 LCSGLLPDDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDV 186
Query: 98 DDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAY 157
D A F E +++ II++ + P+EAL LF++ Q T AL +
Sbjct: 187 DAARRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSC 246
Query: 158 ALMG 161
AL+G
Sbjct: 247 ALLG 250
>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g57430, chloroplastic-like [Cucumis sativus]
Length = 863
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 185/375 (49%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D++ + N+C N G Q ++ K GL+S GN L+N+ ++CG IDDA F
Sbjct: 490 DAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIF 549
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ +SW+ +I HGH +AL LF N T S L A GLV
Sbjct: 550 NEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVT 609
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
EA R F ME+++ I P++EHY+ MV+ LGR G +E + +K + P + +W LL
Sbjct: 610 EARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEM-PFQASAAVWGALLG 668
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------------GMYVGC--------------- 253
++R+H +++L ++A + LL L+P GM+
Sbjct: 669 AARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKE 728
Query: 254 ----WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV--LNRSL-------- 296
WIE+++K+Y F+ + + E+ KL ++ E + G+V + L
Sbjct: 729 PGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPMIETDLHDVEQIEK 788
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ ++ AVA GLI+ P G P RV K++ +C H+A +F+S + RE++V+D
Sbjct: 789 EQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRVCIDCHTAFKFISKVASREIIVRDINR 848
Query: 352 FHHFKDGKCSCKDAY 366
FHHF+DG CSC D +
Sbjct: 849 FHHFRDGSCSCGDYW 863
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ C+ + ++ +LL ++ +++ L +C L+ +G Q +
Sbjct: 255 VSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSA 314
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + VG LI++ S+CG + DA + F P K+ + W IIS N G+ EA
Sbjct: 315 LMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEA 374
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
+ LF + N TT + LK+ A
Sbjct: 375 MSLFTNMYKEGLEFNQTTLSTILKSTA 401
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 101/219 (46%), Gaps = 10/219 (4%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDS------YSICDILNSCLNPILLNV 64
E ++ +LK C ++ E+ ++ R+ L I + +S+ +LN+C N
Sbjct: 148 EFTFSSVLKGCSLTRNLELGKQI-HRVALVTEMISTGISPNEFSLSTVLNACAGLEDENY 206
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G + Y+ K G S P N L+++ ++ G + A F P+ + +SW +I+ V
Sbjct: 207 GMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVL 266
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
H AL L + + T SALKA A +GLV +L ++ ++ +EP
Sbjct: 267 HEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKM-DMEPDSF 325
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+++ + G+ ++ + ++P K ++W +++
Sbjct: 326 VGVGLIDMYSKCGLLQDA-RMVFDLMPXKDV-IVWNSII 362
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 122/375 (32%), Positives = 193/375 (51%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ +L++C L +G +A YM K GL + GN L+++ ++CG I A F
Sbjct: 240 DGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVF 299
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
EK+ +SWT +I +G EAL+LFK+ + + + TF L A + G+V
Sbjct: 300 DEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVD 359
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F M+E Y I P EHY MV+ LGRAG+ ++ EFI+ + P + ++WRTLL
Sbjct: 360 EGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNM-PMQPNAVVWRTLLG 418
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
+ +HG + L + A +LL+L+P G YV
Sbjct: 419 ACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKT 478
Query: 252 --GCWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS----------- 295
+E++N+++EFV + T E+ KLAEI + +K G+V + S
Sbjct: 479 PGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEK 538
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ A+A LI+ G+P RV+K++ +C H A + +S + +RE+VV+D
Sbjct: 539 ETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSR 598
Query: 352 FHHFKDGKCSCKDAY 366
FHHFKDG CSCKD +
Sbjct: 599 FHHFKDGHCSCKDYW 613
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 83/176 (47%), Gaps = 4/176 (2%)
Query: 5 SLISDVEIP----WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
+ S ++ P WN +++ ++++ EL ++ + C D+++ +L + +
Sbjct: 95 QIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLM 154
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
+ G + + + G S V N L+++ + CG + A F+ E+N ++W +I+
Sbjct: 155 DVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVIN 214
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEV 176
+G P+EAL LF++ R + T S L A A +G + R + M +V
Sbjct: 215 GYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKV 270
>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 126/417 (30%), Positives = 197/417 (47%), Gaps = 73/417 (17%)
Query: 12 IPWNLLLKA---------CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILL 62
+ WN L+ I D+ HE L+ IQ + +L + + L
Sbjct: 339 VSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQ--------GTFVSVLPAYSHLGAL 390
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
GT+ A K GL VG C+I++ ++CGK+D+A L F+ TP +++ W +IS
Sbjct: 391 QQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGV 450
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS 182
HGH ++AL LF Q S + TF S L A + GLV + F M+ Y I+P
Sbjct: 451 GVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPI 510
Query: 183 EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
+HY+ MV+ GRAG ++ +FI+ + P K IW LL + R+HG++++ K A L
Sbjct: 511 AKHYACMVDMFGRAGQLDDAFDFIRNM-PIKPDSAIWGALLGACRIHGNVEMGKVASQNL 569
Query: 243 LELDP---GMY---------VGCW-----------------------IEIQNKIYEFVSN 267
ELDP G Y VG W IE++ + F S
Sbjct: 570 FELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSG 629
Query: 268 EELT-----SEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALG 307
++ E+ +L ++ ++ LG+V + S ++ A+A G
Sbjct: 630 NQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFG 689
Query: 308 LISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+I+ P P + K++ +CG H+A +++S I ERE++V+D FHHFKDG CSC D
Sbjct: 690 IINTPPRTPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGYCSCGD 746
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILN--SCLNPIL----LNVG 65
+ WN ++ +E ++ +++ CG DS D+L S + I + G
Sbjct: 237 VTWNSIISG------HEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGG 290
Query: 66 TQAQAYMTKRGL-ISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
YM +RG + GN ++++ ++ KI+ A F S P ++++SW +I+ +
Sbjct: 291 RSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQ 350
Query: 125 HGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRL 169
+G SEA+ ++ D ++ + P TF S L AY+ +G + + R+
Sbjct: 351 NGLASEAIHVY-DHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRM 396
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 13/183 (7%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQ--AYMTKRGLISHPAVGN-CLININSRCGKIDDAD 101
D+++ +L + P GT AQ A + GL+ A + L++ R G++ DA
Sbjct: 70 DAFTFPPLLRAAQGP-----GTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAY 124
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
AF ++ +W ++S + +EA+ LF + + T S L L+G
Sbjct: 125 RAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLG 184
Query: 162 LVGEAYRLFLSMEEVYHIEPSEEHY-SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWR 220
A L + + V H E + M++ G+ GM EEV + G+ L + W
Sbjct: 185 --DRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDL--VTWN 240
Query: 221 TLL 223
+++
Sbjct: 241 SII 243
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 11 EIP-WNLLLKA-CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQA 68
++P WN +L C A+ E V L R+ + D+ ++ +L C +LL A
Sbjct: 134 DVPAWNAMLSGLCRNARAAEAV-GLFGRMVMEGVAGDAVTVSSVLPMC---VLLGDRALA 189
Query: 69 QA---YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
A Y K GL V N +I++ + G +++ F ++ ++W IIS
Sbjct: 190 LAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQG 249
Query: 126 GHPSEALDLF 135
G + A+++F
Sbjct: 250 GQVASAVEMF 259
>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Brachypodium distachyon]
Length = 661
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 127/409 (31%), Positives = 200/409 (48%), Gaps = 56/409 (13%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ W ++ C++ +D E V +L +Q +S +I +L + N L G A
Sbjct: 255 VSWTSIVACCVQNGRDLEAV-DLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHC 313
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ ++G + VG+ L+++ ++CGK A F + P +N +SW +I HG +
Sbjct: 314 FSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAAN 373
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+ LF Q + TF L A + GL E R F M++ + I P EHY+ MV
Sbjct: 374 AVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMV 433
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
LGR+G +E + I + P + IW +LL S RV+G++ LA+ A +KL +L+P
Sbjct: 434 TLLGRSGKLDEAYDLINEM-PFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNA 492
Query: 248 GMYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTS 272
G YV GC WIEI+NK++ ++ + + +
Sbjct: 493 GNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMT 552
Query: 273 EVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPT 317
+++KL ++ M LGF +R ++ AVALGLIS G P
Sbjct: 553 AITEKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEKLAVALGLISTRPGTPL 612
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RVIK++ +CG H A +F+S+ +RE+ V+D FHHFKDGKCSC D +
Sbjct: 613 RVIKNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 1/171 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN L+ ++ L R+ F D+ + L++ + ++VG Q Y
Sbjct: 119 ITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGY 178
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G V LI++ +CG+ D+ F + + S +++ + SEA
Sbjct: 179 VVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEA 238
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS 182
L LF++ R +N ++ S + G EA LF +M+ + +EP+
Sbjct: 239 LLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSI-GVEPN 288
>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
Length = 770
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 179/378 (47%), Gaps = 62/378 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ IL+ C + L G Q A K G +S V + L+N+ ++CG I DA+ AF
Sbjct: 392 DLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAF 451
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P + ++WT +IS HG P EA+ LF++ + N TF S L A + GLV
Sbjct: 452 LEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVE 511
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK--GIVPGKLCPLIWRTL 222
EA F M++ Y IEP +HY M++ R G E+ FIK G P + IW +L
Sbjct: 512 EAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNE---AIWSSL 568
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP----------GMYVGC------------------- 253
+ R HG+M+LA YA DKLLEL P MY+
Sbjct: 569 VAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVG 628
Query: 254 ------WIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQ--------- 298
WI I++K+Y F +N+ T + +L ++ EN+ E + YQ
Sbjct: 629 ILRDRSWITIKDKVYFFRANDR-THPQATELYQLLENLLEKAKAIGYEPYQNAELSDSED 687
Query: 299 ------------TKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVV 346
++ AVALGL+ P G RV K++ MC HS+ + S + RE++V
Sbjct: 688 DEKPAAGSLKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIV 747
Query: 347 KDPGSFHHFKDGKCSCKD 364
+D H FKDG+CSC D
Sbjct: 748 RDSKRLHKFKDGRCSCGD 765
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y++ LN+CL +++G Q Y K G S ++GN L ++ ++ G +D A AF
Sbjct: 180 YTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWR 239
Query: 107 TPEKNSLSWTFIISA 121
PEKN ++WT +ISA
Sbjct: 240 IPEKNVITWTTMISA 254
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L+ C+ L +M K G + V L+N RC DA F PE+N
Sbjct: 84 LLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMPERN 143
Query: 112 SLSWTFIISARVNHGHPSEALDLF 135
++WT +++ + P+ L++F
Sbjct: 144 VVTWTALVTGYTLNSQPALGLEVF 167
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 12 IPWNLLLKACIKAKD-YEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
I W ++ AC + ++ E+ L + + + +++ +++ C + LN+G Q QA
Sbjct: 246 ITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQA 305
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN------ 124
+ K G ++ V N + + R G+ D+A F+ + + ++W +IS
Sbjct: 306 FSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAK 365
Query: 125 -----HGHPSEALDLFKDKQWRYTSMNPTTFRSALKA-YALMGL 162
+AL +F+D + + TF S L A+M L
Sbjct: 366 DDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMAL 409
>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
Length = 730
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 179/378 (47%), Gaps = 62/378 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ IL+ C + L G Q A K G +S V + L+N+ ++CG I DA+ AF
Sbjct: 352 DLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAF 411
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P + ++WT +IS HG P EA+ LF++ + N TF S L A + GLV
Sbjct: 412 LEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVE 471
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK--GIVPGKLCPLIWRTL 222
EA F M++ Y IEP +HY M++ R G E+ FIK G P + IW +L
Sbjct: 472 EAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNE---AIWSSL 528
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP----------GMYVGC------------------- 253
+ R HG+M+LA YA DKLLEL P MY+
Sbjct: 529 VAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVG 588
Query: 254 ------WIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQ--------- 298
WI I++K+Y F +N+ T + +L ++ EN+ E + YQ
Sbjct: 589 ILRDRSWITIKDKVYFFRANDR-THPQATELYQLLENLLEKAKAIGYEPYQNAELSDSED 647
Query: 299 ------------TKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVV 346
++ AVALGL+ P G RV K++ MC HS+ + S + RE++V
Sbjct: 648 DEKPAAGSLKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIV 707
Query: 347 KDPGSFHHFKDGKCSCKD 364
+D H FKDG+CSC D
Sbjct: 708 RDSKRLHKFKDGRCSCGD 725
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y++ LN+CL +++G Q Y K G S ++GN L ++ ++ G +D A AF
Sbjct: 140 YTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWR 199
Query: 107 TPEKNSLSWTFIISA 121
PEKN ++WT +ISA
Sbjct: 200 IPEKNVITWTTMISA 214
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 12 IPWNLLLKACIKAKD-YEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
I W ++ AC + ++ E+ L + + + +++ +++ C + LN+G Q QA
Sbjct: 206 ITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQA 265
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN------ 124
+ K G ++ V N + + R G+ D+A F+ + + ++W +IS
Sbjct: 266 FSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAK 325
Query: 125 -----HGHPSEALDLFKDKQWRYTSMNPTTFRSALKA-YALMGL 162
+AL +F+D + + TF S L A+M L
Sbjct: 326 DDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMAL 369
>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 839
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 127/416 (30%), Positives = 203/416 (48%), Gaps = 59/416 (14%)
Query: 9 DVEIPWNLLLKACI---KAKDYEMVHE--LLERIQLCCGFIDSYSICDILNSCLNPILLN 63
DV NL+ + + KD+ + E L ++ + S++ +L+ +
Sbjct: 425 DVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIG 484
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G Q A + K G + +V N LI++ S+CG + A F + N ++WT II+
Sbjct: 485 KGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFA 544
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
HG S+AL+LF + N T+ + L A + +GL+ EA++ F SM + + I P
Sbjct: 545 KHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRM 604
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
EHY+ MV+ LGR+G+ E +EFI + P L+WRT L S RVH + KL ++A +L
Sbjct: 605 EHYACMVDLLGRSGLLSEAIEFINSM-PFDADALVWRTFLGSCRVHRNTKLGEHAAKMIL 663
Query: 244 EL---DPGMYV--------------------------------GCWIEIQNKIYEFVSNE 268
E DP Y+ WIE++N++++F +
Sbjct: 664 EREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGD 723
Query: 269 EL---TSEVSDKLAEIEENMKELGFVLN--------------RSLYQTKMK-AVALGLIS 310
L ++ +KL E+ +K +G+V N + L+Q K AVA LIS
Sbjct: 724 TLHPKAQQIYEKLDELALKIKNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAFALIS 783
Query: 311 FPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P+ P RV K++ +CG H+A +++S + RE+VV+D FHH KDG CSC D +
Sbjct: 784 TPNPKPIRVFKNLRVCGDCHTAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 75/151 (49%), Gaps = 4/151 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQA 70
+ W L++ + + +L + + G++ D +++ +++ C L++G + +
Sbjct: 227 VTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHS 286
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA--RVNHGHP 128
++ + GL+ VG L+++ ++CG + +A F E N +SWT +++ R G+
Sbjct: 287 WVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYE 346
Query: 129 SEALDLFKDKQWR-YTSMNPTTFRSALKAYA 158
EA+ +F + + + N TF LKA A
Sbjct: 347 REAMRMFSNMLLQGGVAPNCFTFSGVLKACA 377
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 60/123 (48%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
++ +L +C + + G Q K GL + VGN L+++ ++ G+++ A F
Sbjct: 367 FTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDV 426
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
EKN +S T + V + + DL ++ ++ + ++ T+ S L A +G +G+
Sbjct: 427 LFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKG 486
Query: 167 YRL 169
++
Sbjct: 487 EQI 489
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 19 KACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLI 78
+ C+KA EM +LL + + + + Y ++ +CL G ++ K G
Sbjct: 134 RNCLKA--VEMFDQLLLQDGV---YPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYF 188
Query: 79 -SHPAVGNCLININSRCGKIDDADLA---FKSTPEKNSLSWTFIISARVNHGHPSEALDL 134
SH VG LI++ + + D + A F EKN ++WT +I+ +G+ EA+DL
Sbjct: 189 DSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDL 248
Query: 135 F 135
F
Sbjct: 249 F 249
>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
Length = 770
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 179/378 (47%), Gaps = 62/378 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ IL+ C + L G Q A K G +S V + L+N+ ++CG I DA+ AF
Sbjct: 392 DLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAF 451
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P + ++WT +IS HG P EA+ LF++ + N TF S L A + GLV
Sbjct: 452 LEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVE 511
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK--GIVPGKLCPLIWRTL 222
EA F M++ Y IEP +HY M++ R G E+ FIK G P + IW +L
Sbjct: 512 EAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNE---AIWSSL 568
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP----------GMYVGC------------------- 253
+ R HG+M+LA YA DKLLEL P MY+
Sbjct: 569 VAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVG 628
Query: 254 ------WIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQ--------- 298
WI I++K+Y F +N+ T + +L ++ EN+ E + YQ
Sbjct: 629 ILRDRSWITIKDKVYFFRANDR-THPQATELYQLLENLLEKAKAIGYEPYQNAELSDSED 687
Query: 299 ------------TKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVV 346
++ AVALGL+ P G RV K++ MC HS+ + S + RE++V
Sbjct: 688 DEKPAAGSLKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIV 747
Query: 347 KDPGSFHHFKDGKCSCKD 364
+D H FKDG+CSC D
Sbjct: 748 RDSKRLHKFKDGRCSCGD 765
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y++ LN+CL +++G Q Y K G S ++GN L ++ ++ G +D A AF
Sbjct: 180 YTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWR 239
Query: 107 TPEKNSLSWTFIISA 121
PEKN ++WT +ISA
Sbjct: 240 IPEKNVITWTTMISA 254
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L+ C+ L +M K G + V L+N RCG DA F PE+N
Sbjct: 84 LLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPERN 143
Query: 112 SLSWTFIISARVNHGHPSEALDLF 135
++WT +++ + P+ L++F
Sbjct: 144 VVTWTALVTGYTLNSQPALGLEVF 167
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 17/166 (10%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERI--QLCCGFI-DSYSICDILNSCLNPILLNVGTQA 68
I W ++ AC A+D E V L L G + + +++ +++ C + LN+G Q
Sbjct: 246 ITWTTMISAC--AEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQV 303
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN---- 124
QA+ K G ++ V N + + R G+ D+A F+ + + ++W +IS
Sbjct: 304 QAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDS 363
Query: 125 -------HGHPSEALDLFKDKQWRYTSMNPTTFRSALKA-YALMGL 162
+AL +F+D + + TF S L A+M L
Sbjct: 364 AKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMAL 409
>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
Length = 664
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 201/410 (49%), Gaps = 58/410 (14%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ W ++ C++ +D E V +L +Q +S +I +L + N L G A
Sbjct: 258 VSWTSIVACCVQNGRDLEAV-DLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHC 316
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ ++G VG+ L+++ ++CG++ DA + F++ P +N +SW +I HG
Sbjct: 317 FSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAEN 376
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+ LF+ Q + TF L A + G E F M+ + I P EHY+ MV
Sbjct: 377 AVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMV 436
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
LGRAG ++ + I + P + IW +LL S RVHG++ LA+ A + L +L+P
Sbjct: 437 TLLGRAGKLDDAYDIINQM-PFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLEPENA 495
Query: 248 GMYV-------------------------------GC-WIEIQNKIYEFV---SNEELTS 272
G YV GC WIEI+NK++ + S+ + +
Sbjct: 496 GNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHMLLAGDSSHPMMA 555
Query: 273 EVSDKLAEIEENMKELGFVLNR----------------SLYQTKMKAVALGLISFPHGMP 316
+++KL + M+ LGF + S++ K+ AVALGLIS HG P
Sbjct: 556 AITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILSVHSEKL-AVALGLISTSHGTP 614
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+VIK++ +CG H A +F+S+ RE+ V+D FHHFKDGKCSC D +
Sbjct: 615 LQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHHFKDGKCSCADYW 664
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
VG Q Y+ K G V LI++ +CG+ D+ F + + S +++
Sbjct: 174 VGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLS 233
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS 182
+ SEAL LF++ R +N ++ S + G EA LF M+ IEP+
Sbjct: 234 RNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQS-EGIEPN 291
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 117/408 (28%), Positives = 201/408 (49%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ C++ ++ ++ + SYS I+ +C + L++G Q Y
Sbjct: 306 ISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGY 365
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+T+ G + + + L+++ ++CG I A F ++ +SWT +I HG +A
Sbjct: 366 ITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDA 425
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
++LF+ + N F + L A + GLV EA++ F SM + I P EHY+ + +
Sbjct: 426 IELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSD 485
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG EE +FI G+ G IW TLL + RVH ++ +A+ +++LE+DP G
Sbjct: 486 LLGRAGRLEEAYDFICGMHIGPTGS-IWATLLSACRVHXNIDMAEKVANRILEVDPNNTG 544
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTSE 273
Y+ C WIE++NK+Y F++ +E +
Sbjct: 545 AYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEK 604
Query: 274 VSDKLAEIEENMKELGFVLNRSLYQTKMK---------------AVALGLISFPHGMPTR 318
+ + + + E M++ G+V + S ++ A+ G+I+ P GM R
Sbjct: 605 IREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIR 664
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V K++ +C H+A +F+S I+ RE+VV+D FHHFK+G CSC D +
Sbjct: 665 VTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 712
>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
Length = 1122
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 116/408 (28%), Positives = 202/408 (49%), Gaps = 58/408 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W L+ ++ +E +L ++ D + I+ + + ++ +G Q +Y
Sbjct: 404 ISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSY 463
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G S G+ L+++ ++CG +D+A F PE+NS+SW +ISA ++G A
Sbjct: 464 LIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNA 523
Query: 132 LDLFKDKQWRYTSMNP--TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
+ +F+ + NP TF S L A + GL E + F M+ Y I P +EHY+ +
Sbjct: 524 IKMFEGML--HCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACV 581
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
++ LGR G F +V + + + P K P+IW ++L S R+HG+ +LA+ A DKL ++P
Sbjct: 582 IDTLGRVGCFSQVQKMLVEM-PFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTD 640
Query: 248 --------------GMY--VGC-----------------WIEIQNKIYEFVSNE---ELT 271
G + C W+EI+ KIY F SN+ +
Sbjct: 641 ATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMI 700
Query: 272 SEVSDKLAEIEENMKELGF---------VLNRSL------YQTKMKAVALGLISFPHGMP 316
E+ D+L + + M + G+ +++ L Y ++ A+A L++ P G P
Sbjct: 701 DEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTP 760
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
R++K++ C H+ + +S I+ R+++V+D FHHFKDG CSC D
Sbjct: 761 IRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGD 808
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 61/108 (56%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
+++G Q A + GL S +GN LI++ S+CG +D A F + EK+++SWT +I+
Sbjct: 353 VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITG 412
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
V +G EAL LF D + + TF S +KA + + ++G +L
Sbjct: 413 YVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQL 460
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 57/128 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N ++ C K + +L ++ ++ IL L +G Q A
Sbjct: 202 VTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHAL 261
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + + V N L++ S+C +DD F PE++++S+ II+A + +
Sbjct: 262 VLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATV 321
Query: 132 LDLFKDKQ 139
L LF++ Q
Sbjct: 322 LRLFREMQ 329
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 35/155 (22%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK-------- 136
N +++ S G + A F S+P +N+ +WT ++ A G S+AL LF+
Sbjct: 78 NLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI 137
Query: 137 -DKQWRYTSMN------PTTFRSALK---------------AYALMGLVGEAYRLFLSME 174
D+ T +N P+ A+K AY GL+ A R+FL M
Sbjct: 138 PDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMH 197
Query: 175 EVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI 209
+ + Y+ M+ + G+ + L+ +
Sbjct: 198 DKDAVT-----YNAMMMGCSKEGLHTQALQLFAAM 227
>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
Length = 810
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 116/408 (28%), Positives = 202/408 (49%), Gaps = 58/408 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W L+ ++ +E +L ++ D + I+ + + ++ +G Q +Y
Sbjct: 404 ISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSY 463
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G S G+ L+++ ++CG +D+A F PE+NS+SW +ISA ++G A
Sbjct: 464 LIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNA 523
Query: 132 LDLFKDKQWRYTSMNP--TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
+ +F+ + NP TF S L A + GL E + F M+ Y I P +EHY+ +
Sbjct: 524 IKMFEGML--HCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACV 581
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
++ LGR G F +V + + + P K P+IW ++L S R+HG+ +LA+ A DKL ++P
Sbjct: 582 IDTLGRVGCFSQVQKMLVEM-PFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTD 640
Query: 248 --------------GMY--VGC-----------------WIEIQNKIYEFVSNE---ELT 271
G + C W+EI+ KIY F SN+ +
Sbjct: 641 ATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMI 700
Query: 272 SEVSDKLAEIEENMKELGF---------VLNRSL------YQTKMKAVALGLISFPHGMP 316
E+ D+L + + M + G+ +++ L Y ++ A+A L++ P G P
Sbjct: 701 DEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTP 760
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
R++K++ C H+ + +S I+ R+++V+D FHHFKDG CSC D
Sbjct: 761 IRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGD 808
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
+++G Q A + GL S +GN LI++ S+CG +D A F + EK+++SWT +I+
Sbjct: 353 VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITG 412
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
V +G EAL LF D + + TF S +KA + + ++G +L + + +
Sbjct: 413 YVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGY-KS 471
Query: 182 SEEHYSIMVEALGRAGMFEEVLE 204
S S++V+ + G +E L
Sbjct: 472 SVFSGSVLVDMYAKCGCLDEALR 494
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 57/128 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N ++ C K + +L ++ ++ IL L +G Q A
Sbjct: 202 VTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHAL 261
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + + V N L++ S+C +DD F PE++++S+ II+A + +
Sbjct: 262 VLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATV 321
Query: 132 LDLFKDKQ 139
L LF++ Q
Sbjct: 322 LRLFREMQ 329
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 35/155 (22%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK-------- 136
N +++ S G + A F S+P +N+ +WT ++ A G S+AL LF+
Sbjct: 78 NLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI 137
Query: 137 -DKQWRYTSMN------PTTFRSALK---------------AYALMGLVGEAYRLFLSME 174
D+ T +N P+ A+K AY GL+ A R+FL M
Sbjct: 138 PDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMH 197
Query: 175 EVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI 209
+ + Y+ M+ + G+ + L+ +
Sbjct: 198 DKDAVT-----YNAMMMGCSKEGLHTQALQLFAAM 227
>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Brachypodium distachyon]
Length = 804
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 118/371 (31%), Positives = 180/371 (48%), Gaps = 54/371 (14%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y+ + +C L G Q A++ + G + + GN L+ + +RCG + DA L F
Sbjct: 433 YTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLV 492
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
P +S+SW +ISA HGH EAL+LF + + +F + L A GLV +
Sbjct: 493 MPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDG 552
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226
++ F SME + I P E+HY+ +++ LGRAG E + IK +P + P IW +L
Sbjct: 553 FQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIK-TMPFEPTPAIWEAILSGC 611
Query: 227 RVHGDMKLAKYALDKLLELDP---GMYV-------------------------------G 252
R++GDM+L YA D+L ++ P G Y+ G
Sbjct: 612 RINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPG 671
Query: 253 C-WIEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMK------ 302
C WIE+ NK++ F+ + EV L + M++LG+V + M
Sbjct: 672 CSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPHEKEY 731
Query: 303 ---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
AV+ GL+ P G V+K++ +CG H+A FMS + RE+VV+D FH
Sbjct: 732 VLFAHSERLAVSFGLLKLPAGATVTVLKNLKICGDCHTAMMFMSRAVGREIVVRDVRRFH 791
Query: 354 HFKDGKCSCKD 364
HFKDG+CSC +
Sbjct: 792 HFKDGECSCGN 802
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 10/160 (6%)
Query: 45 DSYSICDILNSC--LNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC---GKIDD 99
D YS +L++ ++ + ++ TQ + K G + +V N LI + +C G D
Sbjct: 158 DDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRD 217
Query: 100 ADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159
A PEK+ L+WT I+ V G A F++ + + + + Y
Sbjct: 218 ARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFD----VVWNAMISGYVQ 273
Query: 160 MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMF 199
G+ EA+ LF M I P E ++ ++ A AG F
Sbjct: 274 SGMCAEAFELFRRMVS-KRIPPDEFTFTSLLSACANAGFF 312
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 9/197 (4%)
Query: 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP--ILLNVGT 66
+ ++ WN ++ +++ EL R+ D ++ +L++C N L
Sbjct: 259 EFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSV 318
Query: 67 QAQAYMTKRGLISHPA--VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
Q + + A V N L+ + S+ GKI A F S K+ +SW I+S +
Sbjct: 319 HGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIE 378
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
G A +FK+ ++ + ++ + Y GL +A +LF M ++P +
Sbjct: 379 SGCLDNAARIFKEMPYK----SELSWMVMVSGYVHGGLAEDALKLFNQMRS-EDVKPCDY 433
Query: 185 HYSIMVEALGRAGMFEE 201
Y+ V A G G +
Sbjct: 434 TYAGAVAACGELGALKH 450
>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Glycine max]
Length = 635
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 186/375 (49%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
++ S+ +L C N L +G Q + K L S G L+++ S+CG + DA F
Sbjct: 262 NALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELF 321
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P K+ + W +IS HG +AL LF + + + TF + L A GLV
Sbjct: 322 IQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVD 381
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ F +M + IE EHY+ MV+ LGRAG E ++ IK + P K P I+ TLL
Sbjct: 382 LGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSM-PFKPHPAIYGTLLG 440
Query: 225 SSRVHGDMKLAKYALDKLLELDPGMYVG-------------------------------- 252
+ R+H ++ LA++A LLELDP + G
Sbjct: 441 ACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKI 500
Query: 253 ---CWIEIQNKIYEFVSNEELTSEVS---DKLAEIEENMKELGFVLNRS----------- 295
WIEI + ++ F S++ L E++ +KL ++E+ MK G+V +
Sbjct: 501 PGYSWIEINSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELK 560
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
L+ ++ A+A GL+ P G+P RV K++ +CG HSA +++STI RE++V+D
Sbjct: 561 EQLLLWHSEKLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTR 620
Query: 352 FHHFKDGKCSCKDAY 366
FHHFKDG CSC+D +
Sbjct: 621 FHHFKDGFCSCRDYW 635
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 77/193 (39%), Gaps = 36/193 (18%)
Query: 12 IPWNLLLKA-CIKAKDYEMVHELLERI----------QLCC-----------GFIDSYSI 49
+ WN +L A K +E +L E+I L C GF DS +
Sbjct: 73 VTWNSILAAFAKKPGHFEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPL 132
Query: 50 CDILN-SCLNPILLNVGTQAQAYMTKRGLISHPAVGNC-----LININSRCGKIDDADLA 103
D+ + + + L VG +A R L S NC +++ CG +D A
Sbjct: 133 KDVASWNTMISALAQVGLMGEA----RRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVEC 188
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F + P ++ ++WT +I+ + G A LF++ R T+ + + Y G
Sbjct: 189 FYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMR----TLVTWNAMIAGYVENGRA 244
Query: 164 GEAYRLFLSMEEV 176
+ RLF +M E
Sbjct: 245 EDGLRLFRTMLET 257
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 99/254 (38%), Gaps = 58/254 (22%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH-GHPSEALDLFK------- 136
N LI RCG ID A F+ K++++W I++A GH A LF+
Sbjct: 45 NKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKIPQPNT 104
Query: 137 -----------------DKQWRYTSM---NPTTFRSALKAYALMGLVGEAYRLFLSMEEV 176
D + + SM + ++ + + A A +GL+GEA RLF +M E
Sbjct: 105 VSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPEK 164
Query: 177 YHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAK 236
+ +S MV G + +E P + + ++ + G MK +
Sbjct: 165 NCVS-----WSAMVSGYVACGDLDAAVECFYA-APMR------SVITWTAMITGYMKFGR 212
Query: 237 YALDKLLELDPGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSL 296
+E+ ++++ +S L + + +E E G L R++
Sbjct: 213 ------------------VELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTM 254
Query: 297 YQTKMKAVALGLIS 310
+T +K AL L S
Sbjct: 255 LETGVKPNALSLTS 268
>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
Length = 913
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 128/415 (30%), Positives = 208/415 (50%), Gaps = 65/415 (15%)
Query: 11 EIPWNLLLKACIKA----KDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
E+ WN ++ I K ++V ++++ Q +DS++ IL++C + L G
Sbjct: 505 EVSWNSMISGYIHNELLHKAMDLVWFMMQKGQR----LDSFTFATILSACASVATLERGM 560
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ A + L S VG+ L+++ S+CG+ID A F+ P +N SW +IS HG
Sbjct: 561 EVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHG 620
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
H +AL LF + TF L A + +G V E + F SM EVY + P EH+
Sbjct: 621 HGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHF 680
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS-SRVHG-DMKLAKYALDKLLE 244
S MV+ LGRAG +EV +FI + P K LIWRT+L + R +G + +L + A + LLE
Sbjct: 681 SCMVDLLGRAGKLDEVGDFINSM-PMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLE 739
Query: 245 LDP----------GMY------------------------VGC-WIEIQNKIYEFVSNEE 269
L+P MY GC W+ +++ ++ FV+ ++
Sbjct: 740 LEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDK 799
Query: 270 LTSE---VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISF 311
L E + DKL E+ M++ G++ Y ++ AVA +++
Sbjct: 800 LHPEKDLIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSEKIAVAF-VLTR 858
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+P R++K++ +CG HSA ++S I+ R++V++D FHHF+DGKCSC D +
Sbjct: 859 QSALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 913
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%)
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G + + + N LINI R G + A F +N ++W +IS +G P EA
Sbjct: 127 KYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACA 186
Query: 134 LFKDKQWRYTSMNPTTFRSALKA 156
F+D N F SAL+A
Sbjct: 187 RFRDMVRAGFIPNHYAFGSALRA 209
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 11/130 (8%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQL-CCGFI----DSYSICDILNSCLNPILLNVGT 66
I WN ++ + D ++L +Q GF D++S +L G
Sbjct: 270 ISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGRRK-----GR 324
Query: 67 QAQAYMTKRGLISHP-AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ A++ + GL + A+GN L+N+ ++ G I DA F+ EK+S+SW +IS +
Sbjct: 325 EVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQN 384
Query: 126 GHPSEALDLF 135
+A ++F
Sbjct: 385 ECSEDAAEMF 394
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 42 GFI-DSYSICDILNSCL--NPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC-GKI 97
GFI + Y+ L +C P +G Q ++K S V N LI++ C
Sbjct: 195 GFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSA 254
Query: 98 DDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
+DA F +NS+SW IIS G A DLF Q
Sbjct: 255 NDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQ 296
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 11 EIPWNLLLKACI--KAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQA 68
++ WN ++ A +A + V L+ ++ G + + +IL++ + L V Q
Sbjct: 402 QVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWG-LSRVTFINILSAVSSLSLHEVSHQI 460
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE-KNSLSWTFIISARVNHGH 127
A + K L A+GN L++ +CG++++ + F E ++ +SW +IS +++
Sbjct: 461 HALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNEL 520
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+A+DL + ++ TF + L A A
Sbjct: 521 LHKAMDLVWFMMQKGQRLDSFTFATILSACA 551
>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/410 (28%), Positives = 197/410 (48%), Gaps = 58/410 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ YE +L ++++ + D ++ +L++C +++ G Q A
Sbjct: 108 VSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHAT 167
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL S +V N L+ + ++CG I DA+ AF + P ++ +SWT +I +G +
Sbjct: 168 LVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHS 227
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L + T + TF L A + GL+G F +M++VY I+P EHY+ M++
Sbjct: 228 LQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMID 287
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
LGR+G E + +V + P ++W+ LL + RVH +++L + A L EL+P
Sbjct: 288 LLGRSGKLAEAKGLLNQMV---VAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMN 344
Query: 248 --------GMYVGC-------------------------WIEIQNKIYEFVS---NEELT 271
MY WIE +K+ F+S N L
Sbjct: 345 SMPYVMLSNMYSAAGKWEDAARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLR 404
Query: 272 SEVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMP 316
+E+ K+ EI +KE G+V + S Y ++ AVA GL++ P G P
Sbjct: 405 NEIYSKIDEIIMLIKEAGYVPDMSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAP 464
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+ K++ +CG H+A ++ S + R ++++D FHHF +G+CSC D +
Sbjct: 465 IRIFKNLRVCGDCHTAMKYTSKVYARHIILRDSNCFHHFTEGRCSCGDYW 514
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 65/127 (51%)
Query: 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQA 68
D E+ WN L+ C++ E ++++ ID Y++ +LNS + ++
Sbjct: 4 DDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISV 63
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
+ K G ++ V N LI++ ++ GK+D A + F +K+ +SWT +++ ++G
Sbjct: 64 HCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSY 123
Query: 129 SEALDLF 135
EA+ LF
Sbjct: 124 EEAIKLF 130
>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 972
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 124/422 (29%), Positives = 214/422 (50%), Gaps = 62/422 (14%)
Query: 4 CSLISDVE----IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP 59
CS+ S++ + WN ++ AC ++ +LL + L +++ ++ L +C
Sbjct: 554 CSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKL 613
Query: 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
L G + ++ + GL + + N LI++ RCG I + F P+++ +SW +I
Sbjct: 614 AALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMI 673
Query: 120 SARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVY 177
S HG +A++LF+ Q+R + P TF + L A + GL+ E ++ F M+ Y
Sbjct: 674 SVYGMHGFGMDAVNLFQ--QFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEY 731
Query: 178 HIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKY 237
++P+ E Y+ MV+ L RAG F E LEFI+ + P + +W +LL + R+H + LA+Y
Sbjct: 732 AMDPAVEQYACMVDLLSRAGQFNETLEFIEKM-PFEPNAAVWGSLLGACRIHCNPDLAEY 790
Query: 238 ALDKLLELDP---GMYV-------------------------------GC-WIEIQNKIY 262
A L EL+P G YV GC WIE++ K++
Sbjct: 791 AARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLH 850
Query: 263 EFV---SNEELTSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAV 304
FV ++ L ++S K+ + ++KE+G+V + + ++ A+
Sbjct: 851 SFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIAL 910
Query: 305 ALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
A GLIS G P R+IK++ +CG HSA +F+S + +R+++++D FHHF DG CSC D
Sbjct: 911 AFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGD 970
Query: 365 AY 366
+
Sbjct: 971 YW 972
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN L+ + D + E +R+ ++ +I L +C L +G + Y
Sbjct: 465 ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGY 524
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + VG+ LI++ S C ++ A F ++ + W IISA G A
Sbjct: 525 VLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNA 584
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
LDL ++ +N T SAL A
Sbjct: 585 LDLLREMNLSNVEVNTVTMVSALPA 609
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 89/216 (41%), Gaps = 11/216 (5%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + + +C VG YM G + V ++++ +CG++D A F
Sbjct: 189 DHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFF 248
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ K+ W ++S + G +AL D + + T+ + + YA G
Sbjct: 249 EEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFE 308
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
EA + FL M + +P+ ++ ++ + G E L + +V + P ++ +
Sbjct: 309 EASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKP---NSITI 365
Query: 225 SSRVHG--DMKLAKYALD------KLLELDPGMYVG 252
+S V ++ L ++ + K+ ELD + VG
Sbjct: 366 ASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVG 401
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 83/217 (38%), Gaps = 38/217 (17%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTK-RGLISHPAVGNCLININSRCGKIDDADLA 103
+S +I +++C N LL G + Y K L S VGN L++ ++C ++ A
Sbjct: 361 NSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRK 420
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F + + +SW +++ G EA++L + +++ + T+ + + G
Sbjct: 421 FGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDG 480
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
A F M + ++P+ S + A G+ R L
Sbjct: 481 KAALEFFQRMHSM-GMDPNTTTISGALAACGQV-----------------------RNLK 516
Query: 224 LSSRVHGDMKLAKYALDKLLELDPG-------MYVGC 253
L +HG Y L +EL G MY GC
Sbjct: 517 LGKEIHG------YVLRNHIELSTGVGSALISMYSGC 547
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
IL C L +G Q A + G+ +G+ L+ + + G ++DA F E+N
Sbjct: 95 ILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERN 154
Query: 112 SLSWTFIISARVNHGHPSEALDLF 135
SWT I+ G E + LF
Sbjct: 155 VFSWTAIMEMYCGLGDYEETIKLF 178
>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Vitis vinifera]
Length = 684
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 184/375 (49%), Gaps = 56/375 (14%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
+ + +L++C +L VG K ++ + VG+ L+++ +CG I+DA+ AF
Sbjct: 311 FMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDE 370
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVG 164
PE+N ++W +I + G A+ LF + + P TF L A + G V
Sbjct: 371 MPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVN 430
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+F SM Y IEP EHY+ +V+ LGRAGM E+ +FIK + P + +W LL
Sbjct: 431 VGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKM-PIRPTVSVWGALLG 489
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
+S++ G +L K A D L ELDP G +V
Sbjct: 490 ASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKG 549
Query: 252 -GC-WIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRSL---------- 296
GC WI N ++ F + + E SE+ LA++ M+ G++ + S
Sbjct: 550 AGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEK 609
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ A+A GLIS P G+P R+ K++ +CG HSA +F+S I+ RE++V+D
Sbjct: 610 AMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNL 669
Query: 352 FHHFKDGKCSCKDAY 366
FH F+D +CSC+D +
Sbjct: 670 FHRFRDNQCSCRDYW 684
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
+ C LN+C L +G Q ++ + G + +V N LI+ +C ++ +++ F
Sbjct: 211 TFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGI 270
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
+ N +SW +I + V + +A +F + R + PT F + A GL
Sbjct: 271 SKPNDVSWCSMIVSYVQNDEEEKACLVF--LRARKEGIEPTDFMVSSVLSACAGL 323
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA-VGNCLININSRCGKIDDAD 101
F+ S+ ++ S ++ +G A A + K P+ + N L+N+ S+ + + A
Sbjct: 3 FLSPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQ 62
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
L TP ++ ++WT +I+ V +G + AL F + + N TF A KA
Sbjct: 63 LLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKA 117
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
VG Q A K G IS VG ++ S+ G ++A F PE+N +W +S V
Sbjct: 126 VGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSV 185
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
G +AL F + + N TF + L A A
Sbjct: 186 LEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACA 220
>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 184/375 (49%), Gaps = 56/375 (14%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
+ + +L++C +L VG K ++ + VG+ L+++ +CG I+DA+ AF
Sbjct: 210 FMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDE 269
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVG 164
PE+N ++W +I + G A+ LF + + P TF L A + G V
Sbjct: 270 MPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVN 329
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+F SM Y IEP EHY+ +V+ LGRAGM E+ +FIK + P + +W LL
Sbjct: 330 VGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKM-PIRPTVSVWGALLG 388
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
+S++ G +L K A D L ELDP G +V
Sbjct: 389 ASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKG 448
Query: 252 -GC-WIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRSL---------- 296
GC WI N ++ F + + E SE+ LA++ M+ G++ + S
Sbjct: 449 AGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEK 508
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ A+A GLIS P G+P R+ K++ +CG HSA +F+S I+ RE++V+D
Sbjct: 509 AMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNL 568
Query: 352 FHHFKDGKCSCKDAY 366
FH F+D +CSC+D +
Sbjct: 569 FHRFRDNQCSCRDYW 583
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
VG Q A K G IS VG ++ S+ G ++A F PE+N +W +S V
Sbjct: 126 VGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSV 185
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTF 150
G +AL F + R + PT F
Sbjct: 186 LEGRYDDALTAFIEA--RKEGIEPTDF 210
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA-VGNCLININSRCGKIDDAD 101
F+ S+ ++ S ++ +G A A + K P+ + N L+N+ S+ + + A
Sbjct: 3 FLSPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQ 62
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
L TP ++ ++WT +I+ V +G + AL F + + N TF A KA
Sbjct: 63 LLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKA 117
>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 187/373 (50%), Gaps = 54/373 (14%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y+ + +C L G Q A + + G S + GN LI + ++CG ++ A F +
Sbjct: 428 YAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLT 487
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
P +S+SW +I+A HGH ++AL+LF+ + TF + L + GLV E
Sbjct: 488 MPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEG 547
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226
+R F SM +Y I P E+HY+ M++ L RAG F E + I+ +P + P IW LL
Sbjct: 548 HRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIE-TMPVEPGPPIWEALLAGC 606
Query: 227 RVHGDMKLAKYALDKLLELDP---GMYV-------------------------------G 252
R+HG+M L A ++L EL P G YV G
Sbjct: 607 RIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPG 666
Query: 253 C-WIEIQNKIYEFVSNEELTSEVS---DKLAEIEENMKELGFVLNRSLYQTKMK------ 302
C WIE++NK++ F+ ++ + EV + L E+ M++LG++ + M+
Sbjct: 667 CSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEY 726
Query: 303 ---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
AV GL+ P G RV K++ +CG H+A +FMS ++ERE+VV+D FH
Sbjct: 727 VLSTHSEKLAVGFGLLKLPLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFH 786
Query: 354 HFKDGKCSCKDAY 366
HFK+G+CSC + +
Sbjct: 787 HFKNGECSCGNYW 799
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 8/167 (4%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + + E+ ++ L D ++ +L++C N G Q AY
Sbjct: 257 VAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAY 316
Query: 72 MTKR----GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
+ + L +V N L + +CGK+D+A F P K+ +SW I+S VN G
Sbjct: 317 ILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGR 376
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174
EA F++ R N T+ + A G E+ +LF M+
Sbjct: 377 IDEAKSFFEEMPER----NLLTWTVMISGLAQNGFGEESLKLFNRMK 419
>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
Length = 1008
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/408 (28%), Positives = 202/408 (49%), Gaps = 58/408 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W L+ ++ +E +L ++ D + I+ + + ++ +G Q +Y
Sbjct: 602 ISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSY 661
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G S G+ L+++ ++CG +D+A F PE+NS+SW +ISA ++G A
Sbjct: 662 LIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNA 721
Query: 132 LDLFKDKQWRYTSMNP--TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
+ +F+ + NP TF S L A + GL E + F M+ Y I P +EHY+ +
Sbjct: 722 IKMFEGML--HCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACV 779
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
++ LGR G F +V + + + P K P+IW ++L S R+HG+ +LA+ A DKL ++P
Sbjct: 780 IDTLGRVGCFSQVQKMLVEM-PFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTD 838
Query: 248 --------------GMY--VGC-----------------WIEIQNKIYEFVSNE---ELT 271
G + C W+EI+ KIY F SN+ +
Sbjct: 839 ATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMI 898
Query: 272 SEVSDKLAEIEENMKELGF---------VLNRSL------YQTKMKAVALGLISFPHGMP 316
E+ D+L + + M + G+ +++ L Y ++ A+A L++ P G P
Sbjct: 899 DEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTP 958
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
R++K++ C H+ + +S I+ R+++V+D FHHFKDG CSC D
Sbjct: 959 IRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGD 1006
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 61/108 (56%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
+++G Q A + GL S +GN LI++ S+CG +D A F + EK+++SWT +I+
Sbjct: 551 VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITG 610
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
V +G EAL LF D + + TF S +KA + + ++G +L
Sbjct: 611 YVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQL 658
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 35/155 (22%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK-------- 136
N +++ S G + A F S+P +N+ +WT ++ A G S+AL LF+
Sbjct: 292 NLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI 351
Query: 137 -DKQWRYTSMN------PTTFRSALK---------------AYALMGLVGEAYRLFLSME 174
D+ T +N P+ A+K AY GL+ A R+FL M
Sbjct: 352 PDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMH 411
Query: 175 EVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI 209
+ + Y+ M+ + G+ + L+ +
Sbjct: 412 DKDAVT-----YNAMMMGCSKEGLHTQALQLFAAM 441
>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Glycine max]
Length = 815
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 126/418 (30%), Positives = 199/418 (47%), Gaps = 55/418 (13%)
Query: 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILL 62
L +PW L+ ++ +E +L + DS + IL +C N L
Sbjct: 399 FADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASL 458
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
+G Q + + + G +S+ G+ L+++ ++CG I +A F+ P +NS+SW +ISA
Sbjct: 459 TLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAY 518
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS 182
+G AL F+ N +F S L A + GLV E + F SM +VY +EP
Sbjct: 519 AQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPR 578
Query: 183 EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
EHY+ MV+ L R+G F+E E + +P + ++W ++L S R+H + +LA A D+L
Sbjct: 579 REHYASMVDMLCRSGRFDEA-EKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQL 637
Query: 243 LEL----DPGMYVG--------------------------------CWIEIQNKIYEFVS 266
+ D YV W+EI+ K + F +
Sbjct: 638 FNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSA 697
Query: 267 NEE---LTSEVSDKLAEIEENMKELGF--------------VLNRSL-YQTKMKAVALGL 308
N+ T E++ KL E+E+ M+E G+ V SL Y ++ A+A L
Sbjct: 698 NDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEEVKVESLKYHSERIAIAFAL 757
Query: 309 ISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
IS P G P V+K++ C H+A + +S I+ RE+ V+D FHHF DG CSCKD +
Sbjct: 758 ISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHFTDGSCSCKDYW 815
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 64/147 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I +N+L+ C E EL +Q + +L+ N + L +G Q +
Sbjct: 307 ISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQ 366
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
IS VGN L+++ ++C K +A+ F ++S+ WT +IS V G +
Sbjct: 367 AIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDG 426
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L LF + + T+ S L+A A
Sbjct: 427 LKLFVEMHRAKIGADSATYASILRACA 453
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 42 GFIDS-YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDA 100
GF S ++ +L + + + G Q +++ K + + V N L++ S+ +I +A
Sbjct: 235 GFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEA 294
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQW 140
F PE + +S+ +I+ +G E+L+LF++ Q+
Sbjct: 295 RKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQF 334
>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/422 (29%), Positives = 214/422 (50%), Gaps = 62/422 (14%)
Query: 4 CSLISDVE----IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP 59
CS+ S++ + WN ++ AC ++ +LL + L +++ ++ L +C
Sbjct: 311 CSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKL 370
Query: 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
L G + ++ + GL + + N LI++ RCG I + F P+++ +SW +I
Sbjct: 371 AALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMI 430
Query: 120 SARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVY 177
S HG +A++LF+ Q+R + P TF + L A + GL+ E ++ F M+ Y
Sbjct: 431 SVYGMHGFGMDAVNLFQ--QFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEY 488
Query: 178 HIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKY 237
++P+ E Y+ MV+ L RAG F E LEFI+ + P + +W +LL + R+H + LA+Y
Sbjct: 489 AMDPAVEQYACMVDLLSRAGQFNETLEFIEKM-PFEPNAAVWGSLLGACRIHCNPDLAEY 547
Query: 238 ALDKLLELDP---GMYV-------------------------------GC-WIEIQNKIY 262
A L EL+P G YV GC WIE++ K++
Sbjct: 548 AARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLH 607
Query: 263 EFV---SNEELTSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAV 304
FV ++ L ++S K+ + ++KE+G+V + + ++ A+
Sbjct: 608 SFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIAL 667
Query: 305 ALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
A GLIS G P R+IK++ +CG HSA +F+S + +R+++++D FHHF DG CSC D
Sbjct: 668 AFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGD 727
Query: 365 AY 366
+
Sbjct: 728 YW 729
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 46/112 (41%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + + +C VG YM G + V ++++ +CG++D A F
Sbjct: 110 DHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFF 169
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ K+ W ++S + G +AL++F+ N T SA+ A
Sbjct: 170 EEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSA 221
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
IL C L +G Q A + G+ +G+ L+ + + G ++DA F E+N
Sbjct: 16 ILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERN 75
Query: 112 SLSWTFIISARVNHGHPSEALDLF 135
SWT I+ G E + LF
Sbjct: 76 VFSWTAIMEMYCGLGDYEETIKLF 99
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+++ +++ + ++ L +S +I +++C N LL G + Y
Sbjct: 180 WNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCI 239
Query: 74 K-RGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWT--FIISARVNHGHPSE 130
K L S VGN L++ ++C ++ A F + + +SW ++ +G
Sbjct: 240 KVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKA 299
Query: 131 ALDLFK 136
AL+ F+
Sbjct: 300 ALEFFQ 305
>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
Length = 687
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/407 (30%), Positives = 198/407 (48%), Gaps = 56/407 (13%)
Query: 14 WNLLLKA-CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN+L+ + + E + E +R+QL +D + +LN+C + L G +
Sbjct: 283 WNVLINGYTLHGRSREAL-ETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNA 341
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
+ GL S V N L N+ S+CG +++A F S P ++++SW ++ A HG E L
Sbjct: 342 VECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVL 401
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA 192
L + + +N TF S L + + GL+ E + F S+ IE EHY +V+
Sbjct: 402 KLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDL 461
Query: 193 LGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG---- 248
LGRAG +E ++I + P + + W +LL + RVH D+ K A KLLELDPG
Sbjct: 462 LGRAGKLQEAEKYISKM-PSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSA 520
Query: 249 ------MYV--GCW-----------------------IEIQNKIYEFV---SNEELTSEV 274
+Y G W I+++NK++EF ++ +E+
Sbjct: 521 SVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEI 580
Query: 275 SDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTRV 319
DK+ E+ M+E G+V + + Y ++ A+A GLIS P +
Sbjct: 581 YDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPEKSSLHI 640
Query: 320 IKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
K++ +C H+A +F+S I RE+VV+D FHHF+DG CSCKD +
Sbjct: 641 FKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 687
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 103/236 (43%), Gaps = 4/236 (1%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ A ++ + +R+Q D + IL++C+NP L G + ++
Sbjct: 79 WNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVRESIS 138
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ VG LI + +RC ++A F +KN ++W+ II+A +HGH EAL
Sbjct: 139 ETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALR 198
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
F+ Q N TF S L + + E R+ L + E + ++ + + +V
Sbjct: 199 YFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITE-HGLDDTTTMSNALVNVY 257
Query: 194 GRAGMFE-EVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL-LELDP 247
GR E +V E I + + W L+ +HG + A +L LE P
Sbjct: 258 GRCETGELDVAEVILQEMDEQQIT-AWNVLINGYTLHGRSREALETYQRLQLEAIP 312
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC--GKIDDADLAFKSTPE 109
+LN P L ++ +T+ GL + N L+N+ RC G++D A++ + E
Sbjct: 218 LLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDE 277
Query: 110 KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ +W +I+ HG EAL+ ++ Q ++ TF S L A
Sbjct: 278 QQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNA 324
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%)
Query: 51 DILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK 110
++LNS ++P L G + + + V L+N ++CG + DA F P +
Sbjct: 15 NVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCR 74
Query: 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ +W +ISA EA +F+ Q + TF S L A
Sbjct: 75 SVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120
>gi|357149296|ref|XP_003575063.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Brachypodium distachyon]
Length = 789
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/247 (42%), Positives = 145/247 (58%)
Query: 1 LKLCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
LKLC +S+ EI W+ L+K +A D+ V L IQ G +D + C IL SC
Sbjct: 540 LKLCLSLSNREISWDTLVKEFSQAGDHIGVLNLFHVIQRSGGVLDYPTACHILTSCGKLK 599
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
LL G QA AY+TKRGL S P + + LI++ S+CG + DA AF+ +KN+ WT +I
Sbjct: 600 LLCEGLQAHAYLTKRGLASKPCISSHLIDMYSKCGTVKDAFDAFRYMSDKNASCWTSVII 659
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
A + +G P A+DLF + F S LKA A +GLV EA++ F+SM EVY I+
Sbjct: 660 AHLENGCPEIAIDLFVQMLRKEKIPTSLAFLSVLKACAEVGLVSEAFQFFVSMTEVYKIQ 719
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
PSE HYS M+E LGRAGMF E FI +VP + W L +++ +G+ ++ K A+D
Sbjct: 720 PSEAHYSHMIEVLGRAGMFREAEHFIISVVPSESSASAWSLLCSAAKQNGNTRIMKLAMD 779
Query: 241 KLLELDP 247
KL L P
Sbjct: 780 KLASLVP 786
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 7/160 (4%)
Query: 5 SLISDVEIPWNLLLKA-CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLN 63
S + D+ + W L KA C+ H L++ G D + + L SC + + L
Sbjct: 348 SALMDMYVNWATLHKAQCVLPLRMLRYHLLVQ------GKFDQFIVASSLRSCASDLDLA 401
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G AY+ K + S V + L+++ ++CG ++++ L F +T + W+ +IS
Sbjct: 402 AGRMLHAYILKLNMNSDAFVTSSLVDMYAKCGCLEESHLLFSTTKYPGTAEWSAVISGNC 461
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
+G AL LF+ Q + N T+ S L A +G V
Sbjct: 462 LNGQFERALHLFRRMQLDHVRPNEFTYTSVLTACIDLGDV 501
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 184/378 (48%), Gaps = 62/378 (16%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
++ +S ILN+C + L G + A + KR + VG LI++ ++CG +++A
Sbjct: 787 LNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEV 846
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F + EKN ++W +I+A HG S+ALD F + +TF S L A GLV
Sbjct: 847 FDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLV 906
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E R+F S+E + + P+ EHY +V LGRAG F+E I + P +W TLL
Sbjct: 907 MEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQM-PFPPDAAVWETLL 965
Query: 224 LSSRVHGDMKLAKYALDKLLEL---DPGMYV----------------------------- 251
+ R+HG++ LA++A + L+L +P +YV
Sbjct: 966 GACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRK 1025
Query: 252 ---GCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMK------ 302
WIE+ N I+EF++ + E AEI E +K L + R+ Y +
Sbjct: 1026 EPGRSWIEVDNIIHEFIAADRSHPET----AEIYEELKRLSLEMERAGYSPDTQYVLHNL 1081
Query: 303 ----------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVV 346
A+A GL+ P G P R+ K++ +CG H+A +F+S ++ RE++
Sbjct: 1082 DKEHQETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIA 1141
Query: 347 KDPGSFHHFKDGKCSCKD 364
+D FH FK+GKCSC+D
Sbjct: 1142 RDSNRFHTFKNGKCSCED 1159
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 66/145 (45%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + YE ++L ++ D + +L C NP L +G Q
Sbjct: 553 ISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHML 612
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + GL +GN LIN+ RCG + DA F S +N +SWT +I + G +A
Sbjct: 613 IIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKA 672
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
+LF Q +TF S LKA
Sbjct: 673 FELFWQMQNDGFKPVKSTFSSILKA 697
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 66/145 (45%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N L+ A + YE E +++ ++ + +LN+C L G ++
Sbjct: 351 VVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSH 410
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+++ G S +GN LI++ +RCG + A F + P+++ +SW II+ EA
Sbjct: 411 ISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEA 470
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
+ L+K Q TF L A
Sbjct: 471 MKLYKQMQSEGVKPGRVTFLHLLSA 495
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + ++L++ P +L+ G + GL S VG L + RCG + A A
Sbjct: 283 DKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQAL 342
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++ +++ + + +I+A HGH EA + + + MN TT+ S L A + +G
Sbjct: 343 EAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALG 402
Query: 165 EAYRLFLSMEEVYH 178
+ + EV H
Sbjct: 403 AGELIHSHISEVGH 416
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 80/193 (41%), Gaps = 6/193 (3%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
+ IL +C++ L+ G + A++ G VGN LI+ S+ G + DA F
Sbjct: 690 TFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKM 749
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
P ++ +SW +I+ +G AL Q + +N +F S L A + + E
Sbjct: 750 PNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGK 809
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
R+ + + ++ + ++ + G EE E + + W ++ +
Sbjct: 810 RVHAEIVK-RKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNV--VTWNAMINAYA 866
Query: 228 VHGDMKLAKYALD 240
HG LA ALD
Sbjct: 867 QHG---LASKALD 876
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + +D +L +++Q + +L++C N + G
Sbjct: 452 ISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHED 511
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G+ S+ + N L+N+ RCG I +A F+ T ++ +SW +I+ HG A
Sbjct: 512 ILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAA 571
Query: 132 LDLFKDKQWRYTSMNPTTFRSAL 154
LF + + + TF S L
Sbjct: 572 YKLFLEMKKEGLEPDKITFASVL 594
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 2/159 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDS-YSICDILNSCLNPILLNVGTQAQA 70
I WN L+ + + +L E +Q GFI S + IL +C +P L G + +
Sbjct: 149 ISWNSLISCYAQQGFKKKAFQLFEEMQ-TAGFIPSKITYISILTACCSPAELEYGKKIHS 207
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ + G P V N L+N+ +C + A F ++ +S+ ++ + E
Sbjct: 208 KIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEE 267
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
+ LF + T+ + L A+ ++ E R+
Sbjct: 268 CIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRI 306
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 51 DILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK 110
D++ +C L + A M + G+ + N LIN+ +C + DA F P +
Sbjct: 87 DLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRR 146
Query: 111 NSLSWTFIISARVNHGHPSEALDLFKDKQ 139
+ +SW +IS G +A LF++ Q
Sbjct: 147 DVISWNSLISCYAQQGFKKKAFQLFEEMQ 175
>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 990
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 126/411 (30%), Positives = 195/411 (47%), Gaps = 58/411 (14%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDIL--NSCLNPILLNVGTQA 68
++ W ++ CI+ + E + +++L D ++I + +SCL L G Q
Sbjct: 583 DVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTA--LEQGRQI 640
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A K + P VG L+++ ++CG IDDA FK N +W ++ HG
Sbjct: 641 HANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEG 700
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
E L LFK + + TF L A + GLV EAY+ SM Y I+P EHYS
Sbjct: 701 KETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSC 760
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP- 247
+ +ALGRAG+ ++ I+ + + ++RTLL + RV GD + K KLLEL+P
Sbjct: 761 LADALGRAGLVKQAENLIESM-SMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPL 819
Query: 248 ---------GMYVGC-------------------------WIEIQNKIYEFVSNE---EL 270
MY WIE++NKI+ FV ++
Sbjct: 820 DSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQ 879
Query: 271 TSEVSDKLAEIEENMKELGFV--------------LNRSLYQTKMK-AVALGLISFPHGM 315
T + K+ ++ ++K+ G+V R+LY K AVA GL+S P
Sbjct: 880 TELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPST 939
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P RVIK++ +CG H+A ++++ + RE+V++D FH FKDG CSC D +
Sbjct: 940 PIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 2/147 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ ++ D +L + D +++ + +C +N G Q AY
Sbjct: 483 VAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAY 542
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G V + ++++ +CG + A AF S P + ++WT +IS + +G A
Sbjct: 543 AIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERA 602
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
+F Q R + P F A A A
Sbjct: 603 FHVF--SQMRLMGVLPDEFTIATLAKA 627
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 7/142 (4%)
Query: 12 IPWNLLLKACIKAKD--YEMVHE--LLERI-QLCCGFIDSYSICDILNSCLNPILLNVGT 66
+ WN +L A ++ + E + + LL RI + + ++ +L CL+ +
Sbjct: 106 VSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASE 165
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Y K GL V L+NI + GK+ + + F+ P ++ + W ++ A + G
Sbjct: 166 SFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMG 225
Query: 127 HPSEALDLFKDKQWRYTSMNPT 148
EA+DL + + +NP
Sbjct: 226 FKEEAIDL--SSAFHSSGLNPN 245
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 116/408 (28%), Positives = 202/408 (49%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ C++ ++ + ++ + SYS I+ +C + L++G Q Y
Sbjct: 367 ISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGY 426
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+T+ G + + + L+++ ++CG I A F ++ +SWT +I HGH +A
Sbjct: 427 ITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDA 486
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
++LF+ + N F + L A + GLV EA++ F SM + I P EHY+ + +
Sbjct: 487 IELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSD 546
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG EE +FI G+ G +W TLL + RVH ++ +A+ +++LE+DP G
Sbjct: 547 LLGRAGRLEEAYDFICGMPIGPTGS-VWATLLSACRVHKNVDMAEKVANRILEVDPKNTG 605
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTSE 273
Y+ C WIE++NK+Y F++ +E +
Sbjct: 606 AYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEK 665
Query: 274 VSDKLAEIEENMKELGFVLNRSLYQTKMK---------------AVALGLISFPHGMPTR 318
+ + + + E M++ G+V + S ++ A+ G+I+ P G R
Sbjct: 666 IREAMEVLMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIR 725
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V K++ +C H+A +F+S I+ RE+VV+D FHHFK+G CSC D +
Sbjct: 726 VTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773
>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g52630
gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
Length = 588
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 185/376 (49%), Gaps = 55/376 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
++ YS +++ C N LL +G Q K S VG+ L+++ S+CG + A
Sbjct: 215 VNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQV 274
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F P KN W ++ A H H + ++LFK + N TF + L A + GLV
Sbjct: 275 FNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLV 334
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E F M+E IEP+++HY+ +V+ LGRAG +E LE I + P +W LL
Sbjct: 335 DEGRYYFDQMKES-RIEPTDKHYASLVDMLGRAGRLQEALEVITNM-PIDPTESVWGALL 392
Query: 224 LSSRVHGDMKLAKYALDKLLELDP---GMYVG---------------------------- 252
S VH + +LA +A DK+ EL P GM++
Sbjct: 393 TSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKK 452
Query: 253 ----CWIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRSL--------- 296
W+E +NK++ F + E E + E+ +KLAE+ E M++ G++ + S
Sbjct: 453 ETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDE 512
Query: 297 ------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
Y ++ A+A GLI+FP P RV+K++ +CG H+A +FMS R ++V+D
Sbjct: 513 KNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNN 572
Query: 351 SFHHFKDGKCSCKDAY 366
FH F+DGKCSC D +
Sbjct: 573 RFHRFEDGKCSCNDYW 588
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 50 CDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE 109
C IL+ C ++G K G + VG+ L+++ ++CG+I A F P+
Sbjct: 126 CAILSRC------DIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQ 179
Query: 110 KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+N ++W+ ++ G EAL LFK+ + ++N +F S + A
Sbjct: 180 RNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCA 228
>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Glycine max]
Length = 820
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 119/365 (32%), Positives = 184/365 (50%), Gaps = 56/365 (15%)
Query: 55 SCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLS 114
+C+ I+ G Q A + K G ++ + N LI++ S+CG + A F +N ++
Sbjct: 459 ACIGTIV--KGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVIT 516
Query: 115 WTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174
WT IIS HG ++AL+LF + N T+ + L A + +GL+ EA++ F SM
Sbjct: 517 WTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMH 576
Query: 175 EVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKL 234
+ I P EHY+ MV+ LGR+G+ E +EFI + P L+WRT L S RVH + KL
Sbjct: 577 YNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSM-PFDADALVWRTFLGSCRVHRNTKL 635
Query: 235 AKYALDKLLEL---DPGMYV--------------------------------GCWIEIQN 259
++A K+LE DP Y+ WIE+ N
Sbjct: 636 GEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDN 695
Query: 260 KIYEF---VSNEELTSEVSDKLAEIEENMKELGFVLN--------------RSLYQTKMK 302
++++F ++ ++ D+L E+ +K LG++ N + L+Q K
Sbjct: 696 QVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNTDFVLHDVEDEQKEQYLFQHSEK 755
Query: 303 -AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCS 361
AVA LIS P P RV K++ +CG H+A +++S + RE+VV+D FHH KDGKCS
Sbjct: 756 IAVAYALISTPKPKPIRVFKNLRVCGDCHTAIKYISIVTGREIVVRDANRFHHIKDGKCS 815
Query: 362 CKDAY 366
C D +
Sbjct: 816 CNDYW 820
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 12/153 (7%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI------DSYSICDILNSCLNPILLNVG 65
+ W L++ Y + L + + L C + D +++ +L++C+ ++G
Sbjct: 214 VTWTLMITR------YSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLG 267
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Q +++ + GL S VG L+++ ++ ++++ F + N +SWT +IS V
Sbjct: 268 KQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQS 327
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
EA+ LF + + + N TF S LKA A
Sbjct: 328 RQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACA 360
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLI-SHPAVGNCLININSRCG-KIDDA 100
+ + Y +L SC NP+ G A++ K G SH VG LI++ ++ G I A
Sbjct: 142 YPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSA 201
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
+ F KN ++WT +I+ G +A+DLF
Sbjct: 202 RMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLF 236
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 14/158 (8%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI------DSYSICDILNSCLNPILLNVG 65
+ W L+ ++++ + E I+L C + + ++ +L +C + +G
Sbjct: 315 MSWTALISGYVQSRQEQ------EAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIG 368
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Q K GL + VGN LIN+ +R G ++ A AF EKN +S+ A
Sbjct: 369 KQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKA 428
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
E+ + + + +P T+ L A +G +
Sbjct: 429 LDSDESFN--HEVEHTGVGASPFTYACLLSGAACIGTI 464
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 125/406 (30%), Positives = 201/406 (49%), Gaps = 54/406 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WNL++ ++ D V ELL +++ D +I IL +C L G A
Sbjct: 484 VSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAE 543
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K GL S V LI + S+CG++ +A F +++++W +++ HG EA
Sbjct: 544 AVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEA 603
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+DLFK N TF + + A GLV E +F M+E + ++P ++HY MV+
Sbjct: 604 VDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVD 663
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG +E EFI+ + P + +W LL + + H +++LA++A +L L+P
Sbjct: 664 LLGRAGRLQEAEEFIQRM-PCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNAS 722
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNEELTSEVSD 276
+YV G W IEI +I+ FV+ + E+
Sbjct: 723 VYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDS 782
Query: 277 KLAEIE---ENMKELG------FVLN--------RSL-YQTKMKAVALGLISFPHGMPTR 318
AE+E + MKE G FVL+ R+L + ++ A+A GL+ P G P R
Sbjct: 783 IHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHSEKLAIAYGLLKTPPGTPIR 842
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
++K++ +CG H+A +F+S I +RE+V +D FH+FK+G CSC D
Sbjct: 843 IMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGTCSCGD 888
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 5/170 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W +++A + + EL E++ ++ + +LNSC P LN G + ++
Sbjct: 246 VSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSH 305
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS-E 130
+++RGL + V N LI + +C I DA F +++ +SW+ +I+ G+ E
Sbjct: 306 ISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKE 365
Query: 131 ALD----LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEV 176
+LD L + + N TF S LKA ++ G + + ++ + +V
Sbjct: 366 SLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKV 415
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ A + ER++ + + IL +C N +L +
Sbjct: 145 VTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTV 204
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G+ + AV LI + S+CG+I A F+ E+N +SWT II A H +EA
Sbjct: 205 VKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEA 264
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
+L++ S N TF S L +
Sbjct: 265 FELYEKMLQAGISPNAVTFVSLLNS 289
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 5/171 (2%)
Query: 30 VHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN 89
V +LLER++ F + + IL +C L G Q A ++K G S ++ + N
Sbjct: 370 VFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFN 429
Query: 90 INSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTT 149
+ ++CG I +A+ F KN ++W +++ + G + A +F + R N +
Sbjct: 430 MYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTR----NVVS 485
Query: 150 FRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
+ + YA G + + + L SM +V +P ++EA G E
Sbjct: 486 WNLMIAGYAQSGDIAKVFELLSSM-KVEGFQPDRVTIISILEACGALSALE 535
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
++S + I+ C G + + GL +GN LIN S+ G + +
Sbjct: 75 LVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQ 134
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
F+ ++ ++W+ +I+A + HP++A D F+ + N TF S LKA
Sbjct: 135 VFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKA 188
>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 919
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 121/409 (29%), Positives = 198/409 (48%), Gaps = 54/409 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+I WN ++ ++ YE E+ ++ + ++ +++ N + G Q A
Sbjct: 512 KITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHA 571
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K G S V N LI++ +CG I+DA + F E+N +SW II++ HG E
Sbjct: 572 TVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLE 631
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
ALDLF + N TF L A + +GLV E F SM + I P +HY+ +V
Sbjct: 632 ALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVV 691
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG + +F++ + P ++WRTLL + RVH ++++ + A LLEL+P
Sbjct: 692 DILGRAGQLDRARKFVEEM-PVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDS 750
Query: 248 GMYV------------GC--------------------WIEIQNKIYEFVSNEE---LTS 272
YV C WIE++N ++ F + L
Sbjct: 751 ASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAH 810
Query: 273 EVSDKLAEIEENMKELGFVL-NRSLYQTKMK--------------AVALGLISFPHGMPT 317
++ LA++++ + ++G++ N L+ K K AVA GL+S P MP
Sbjct: 811 QIYKYLADLDDRLAKIGYIQGNYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMSLPPSMPL 870
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RVIK++ +C H+ +F S ++ RE+V++D FHHF +G CSC D +
Sbjct: 871 RVIKNLRVCNDCHTWMKFTSEVMGREIVLRDVYRFHHFNNGNCSCGDFW 919
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 96/238 (40%), Gaps = 53/238 (22%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI------DSYSICDILNSCLNPILLNVG 65
+ WNL+L A Y + +L + L C + + ++ +L +C +N+G
Sbjct: 311 VLWNLMLVA------YGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLG 364
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Q K G S V LI++ S+ G +D A + K+ +SWT +I+ V H
Sbjct: 365 EQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQH 424
Query: 126 GHPSEALDLFKDKQ----WRYT-------------------------------SMNPTTF 150
EAL+ FKD Q W S + + +
Sbjct: 425 EFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIW 484
Query: 151 RSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE-FIK 207
+ + YA G EA+ LF ++E I ++ MV ++G++EE LE FIK
Sbjct: 485 NALVNLYARCGRSKEAFSLFEAIEHKDKIT-----WNGMVSGFAQSGLYEEALEVFIK 537
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/220 (18%), Positives = 99/220 (45%), Gaps = 5/220 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ ++ + + E + +QL + D+ + +++C + G Q +
Sbjct: 412 VSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSR 471
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G + ++ N L+N+ +RCG+ +A F++ K+ ++W ++S G EA
Sbjct: 472 VYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEA 531
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L++F N TF S++ A A + + + ++ ++ + +E + ++
Sbjct: 532 LEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVA-NALIS 590
Query: 192 ALGRAGMFEEV-LEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
G+ G E+ ++F + + + W T++ S HG
Sbjct: 591 LYGKCGSIEDAKMQFFE---MSERNHVSWNTIITSCSQHG 627
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 14/192 (7%)
Query: 40 CCGFIDS-YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKID 98
C G + + Y + +L++C L G A + K+G S VGN LI + R G +
Sbjct: 136 CSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLS 195
Query: 99 DADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
A+ F P + +++ +IS G+ AL++F++ + + + T S L A A
Sbjct: 196 LAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACA 255
Query: 159 LMGLVGE-----AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGK 213
+G + + +Y L M Y IE S +++ + G+ E LE K +
Sbjct: 256 SIGDLNKGKQLHSYLLKAGMSPDYIIEGS------LLDLYVKCGVIVEALEIFKS--GDR 307
Query: 214 LCPLIWRTLLLS 225
++W +L++
Sbjct: 308 TNVVLWNLMLVA 319
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ +N L+ + + E E+ E ++L D +I +L +C + LN G Q +
Sbjct: 209 RVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHS 268
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ K G+ + L+++ +CG I +A FKS N + W ++ A ++
Sbjct: 269 YLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAK 328
Query: 131 ALDLF 135
+ DLF
Sbjct: 329 SFDLF 333
>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
[Vitis vinifera]
Length = 1005
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 116/409 (28%), Positives = 205/409 (50%), Gaps = 54/409 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
E+ WN+++ A ++ + +++L +S + +L + G A
Sbjct: 598 EVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHA 657
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ + G +S+ VGN LI++ ++CG++D ++ F K+++SW ++S HGH
Sbjct: 658 CIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDR 717
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+ LF Q ++ +F S L A GLV E ++F SM + YHI+P EHY+ MV
Sbjct: 718 AIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMV 777
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG+F+E L FIK ++P + +W LL S R+H ++KL + ALD L++L+P
Sbjct: 778 DLLGRAGLFDETLGFIK-VMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNP 836
Query: 248 -------GMYV------------------------GC-WIEIQNKIYEFVSNEELTSEVS 275
+Y GC W+E++NK++ F ++ ++
Sbjct: 837 AHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLE 896
Query: 276 DK---LAEIEENMKELGFVLNRS--------------LY-QTKMKAVALGLISFPHGMPT 317
+ E M+++G+V +RS LY ++ A+ L++ P G
Sbjct: 897 SMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTI 956
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+++K++ +C H+ +F+S I R ++V+D FHHF+DG CSC D +
Sbjct: 957 QIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 1/156 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ + D ++ +++L D+ ++ ++ +C L+ GT
Sbjct: 497 VTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGL 556
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP-EKNSLSWTFIISARVNHGHPSE 130
+ K G S V N LI++ ++CG + A+ F T K+ ++W II+A + +GH E
Sbjct: 557 IVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKE 616
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
A+ F + N TF S L A A + E
Sbjct: 617 AISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREG 652
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 11 EIPWNLLLKACIKAKDY----EMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVG 65
I WN +++A ++K Y EM + ++E+ G D Y+ +L +C + L G
Sbjct: 94 RILWNSMIRAYTRSKQYNEALEMYYCMVEK-----GLEPDKYTFTFVLKACTGALNLQEG 148
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ +RGL +G L+++ S+ G + A F P+++ ++W +I+
Sbjct: 149 VWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQS 208
Query: 126 GHPSEALDLFKDKQ 139
P EA+D F+ Q
Sbjct: 209 EDPCEAVDFFRSMQ 222
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 72/158 (45%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
++ ++ W ++ + V EL ++++L I+ S + I L G
Sbjct: 289 MVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKG 348
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ ++ + S V L+ + ++CG+ + A F ++ ++W+ II+A V
Sbjct: 349 KEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQT 408
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
G+P EAL LF++ Q + N T S L A A + L+
Sbjct: 409 GYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLL 446
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ A ++ E L + +Q + ++ IL +C + LL +G +
Sbjct: 396 VAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCF 455
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + S + G L+++ ++CG A F ++ ++W +I+ G P A
Sbjct: 456 TVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNA 515
Query: 132 LDLFKDKQWRYTSMNP 147
+D+F + R +++NP
Sbjct: 516 IDMF--YKLRLSAINP 529
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 2/147 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ +++D + +QL S S+ ++ + + Y
Sbjct: 196 VAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGY 255
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ +R S AV N LI++ S+CG +D A F +++ +SW +++ ++G E
Sbjct: 256 VFRRDFSS--AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEV 313
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L+LF + +N + SA A A
Sbjct: 314 LELFDKMKLGNVRINKVSAVSAFLAAA 340
Score = 37.7 bits (86), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 52 ILNSC--LNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE 109
+L+SC LNP+L Q A + G H ++ + LIN+ S K D A F STP
Sbjct: 38 LLSSCKHLNPLL-----QIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPN 91
Query: 110 KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ + W +I A +EAL+++ + + TF LKA
Sbjct: 92 PSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKA 138
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 186/378 (49%), Gaps = 54/378 (14%)
Query: 42 GFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD 101
G ++ S L++C + + L +G Q + K G + VGN L+ + +CG I++A+
Sbjct: 400 GRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAN 459
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
FK K+ +SW +I+ HG EAL F+ + + T + L A + G
Sbjct: 460 DLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTG 519
Query: 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221
LV + + F +M + Y + P+ +HY+ MV+ LGRAG+ EE +K + P + IW T
Sbjct: 520 LVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNM-PFEPDAAIWGT 578
Query: 222 LLLSSRVHGDMKLAKYALDKLLELDP---GMYV--------------------------- 251
LL +SRVHG+ +LA+ A DK+ ++P GMYV
Sbjct: 579 LLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGV 638
Query: 252 -----GCWIEIQNKIYEFVSNEELTSEVSDKLAEIEE---NMKELGFVLNRSL------- 296
WIEIQNK + F +E E + A +E+ MK+ G+V S+
Sbjct: 639 KKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDVEE 698
Query: 297 --------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
Y ++ AVA G++ G P RVIK++ +C H+A ++M+ + R ++++D
Sbjct: 699 EEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILRD 758
Query: 349 PGSFHHFKDGKCSCKDAY 366
FHHFKDG CSC D +
Sbjct: 759 NNRFHHFKDGSCSCGDYW 776
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I ++CGKI +A F P+++ +SW +I+ GH EAL LF +
Sbjct: 342 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGR 401
Query: 145 MNPTTFRSALKAYA 158
+N ++F SAL A
Sbjct: 402 LNRSSFSSALSTCA 415
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I+ R G+ + A + F PE++ +SW +I V + + +A +LF+ R
Sbjct: 94 NAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFE----RMPE 149
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175
+ ++ + L YA G V +A R+F M E
Sbjct: 150 RDVCSWNTILSGYAQNGCVDDARRVFDRMPE 180
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 45/164 (27%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN+++K ++ ++ EL ER
Sbjct: 122 VSWNVMIKGYVRNRNLGKARELFER----------------------------------- 146
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M +R + S N +++ ++ G +DDA F PEKN +SW ++SA V + EA
Sbjct: 147 MPERDVCSW----NTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEA 202
Query: 132 LDLFKDKQ-WRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174
LF ++ W S N L + + EA + F SM+
Sbjct: 203 CVLFGSRENWALVSWN-----CLLGGFVKKKKIVEARQFFDSMK 241
>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
Length = 865
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 119/409 (29%), Positives = 195/409 (47%), Gaps = 54/409 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
++ W ++ C+ + + + R++ D Y+ ++ + L G Q A
Sbjct: 458 DVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHA 517
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K +S P VG L+++ ++CG I+DA FK +N W ++ HG+ E
Sbjct: 518 NVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEE 577
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A++LFK + + +F L A + GL EAY SM Y IEP EHYS +V
Sbjct: 578 AVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLV 637
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ALGRAG+ +E + I+ +P K I R LL + R+ GD++ K +L L+P
Sbjct: 638 DALGRAGLVQEADKVIE-TMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDS 696
Query: 248 -------GMYVGC-------------------------WIEIQNKIYEFVSNEELTSE-- 273
+Y WI+++N ++ FV ++ +
Sbjct: 697 AAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQAD 756
Query: 274 -VSDKLAEIEENMKELGFVLN--------------RSLYQTKMK-AVALGLISFPHGMPT 317
+ DK+ E+ + ++E G+V + RSLY K A+A GLIS P
Sbjct: 757 IIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTI 816
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RVIK++ +CG H+A +++S + ERE+V++D FHHF+DG CSC D +
Sbjct: 817 RVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 865
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 9/149 (6%)
Query: 12 IPWNLLLKACIKAKD------YEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
+ WN +L A + D E +H L ++ G ++ +L CLN L
Sbjct: 144 VTWNAILGAYAASVDSNDGNAQEGLH-LFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 202
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Y K GL V L+NI S+CG++ DA L F E++ + W ++ V
Sbjct: 203 EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 262
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
G EA LF ++ + + P F L
Sbjct: 263 GLEKEAFQLF--SEFHRSGLRPDEFSVQL 289
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 2/128 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCL--NPILLNVGTQAQ 69
+ WN++LK ++ + +L D +S+ ILN CL L +G Q
Sbjct: 250 VLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVH 309
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
K GL S +V N L+N+ S+ G A F + +SW +IS+
Sbjct: 310 GIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEE 369
Query: 130 EALDLFKD 137
E+++LF D
Sbjct: 370 ESVNLFID 377
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L + ++ L +G A + G + N L+ + S+CG + A F +TPE++
Sbjct: 83 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142
Query: 112 SLSWTFIISARV-----NHGHPSEALDLFKDKQWRYTSMNPTTFRSALK 155
++W I+ A N G+ E L LF+ + S T LK
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLK 191
>gi|326515584|dbj|BAK07038.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 594
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 177/385 (45%), Gaps = 69/385 (17%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ IL+ C + L G Q A K G +S V + L+N+ ++CG I+ A AF
Sbjct: 208 DLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATKAF 267
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P + ++WT +IS HG +A+ LF+D N TF S L A + GLV
Sbjct: 268 VEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACSYAGLVE 327
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK--GIVPGKLCPLIWRTL 222
EA R F M YHIEP +HY MV+ R G ++ FIK G P + IW +L
Sbjct: 328 EAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNE---AIWSSL 384
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP----------GMYVGC------------------- 253
+ R HG+M+LA YA D+LLEL P MY+
Sbjct: 385 VAGCRSHGNMELAFYAADRLLELKPKVIETYVLLLNMYISTGRWRDVARVRKLAKHEDVG 444
Query: 254 ------WIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQ--------- 298
WI I++K+Y F +++T + +L ++ EN+ E + YQ
Sbjct: 445 VLRDRSWIAIRDKVY-FFRADDMTHPQATELYQLLENLLEKAKAVGYEPYQNAPELLFDS 503
Query: 299 -------------------TKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTI 339
++ AVALGL+ P G RV K++ MC HS+ ++ S +
Sbjct: 504 KEGDDDKPAAAAGSLIKHHSERLAVALGLLETPPGATVRVTKNITMCRDCHSSIKYFSLL 563
Query: 340 IERELVVKDPGSFHHFKDGKCSCKD 364
RE+VV+D H FKDG+CSC D
Sbjct: 564 ANREIVVRDSKRLHKFKDGRCSCGD 588
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L++C +++G Q Y K G + ++GN L + + G ++ AFK TP+KN
Sbjct: 1 MLSACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKN 60
Query: 112 SLSWTFIISA 121
++WT +IS+
Sbjct: 61 VITWTTMISS 70
>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
Length = 503
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 194/407 (47%), Gaps = 54/407 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
++ W ++ C+ + + + R++ D Y+ ++ + L G Q A
Sbjct: 96 DVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHA 155
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K +S P VG L+++ ++CG I+DA FK +N W ++ HG+ E
Sbjct: 156 NVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEE 215
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A++LFK + + +F L A + GL EAY SM Y IEP EHYS +V
Sbjct: 216 AVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLV 275
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ALGRAG+ +E + I+ +P K I R LL + R+ GD++ K +L L+P
Sbjct: 276 DALGRAGLVQEADKVIE-TMPFKASASINRALLGACRIQGDVEXGKRVAARLFALEPFDS 334
Query: 248 -------GMYVGC-------------------------WIEIQNKIYEFVSNEELTSE-- 273
+Y WI+++N ++ FV ++ +
Sbjct: 335 AAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQAD 394
Query: 274 -VSDKLAEIEENMKELGFVLN--------------RSLYQTKMK-AVALGLISFPHGMPT 317
+ DK+ E+ + ++E G+V + RSLY K A+A GLIS P
Sbjct: 395 IIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTI 454
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
RVIK++ +CG H+A +++S + ERE+V++D FHHF+DG CSC D
Sbjct: 455 RVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGD 501
>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 120/374 (32%), Positives = 187/374 (50%), Gaps = 55/374 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ IL++ + L G + ++ ++G I ++ N L+++ +RCG ++DA F
Sbjct: 461 DYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIF 520
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
T +N + WT +ISA HG+ A++LF + + TF + L A + GLV
Sbjct: 521 TCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVN 580
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E M+ Y +EP EHY+ +V+ LGR EE + +K + + P +W LL
Sbjct: 581 EGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSM-QNEPTPEVWCALLG 639
Query: 225 SSRVHGDMKLAKYALDKLLELD---PGMYV------------------------------ 251
+ R+H + ++ + A +KLLELD PG YV
Sbjct: 640 ACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKN 699
Query: 252 -GC-WIEIQNKIYEFVSNEELTSE---VSDKLAEIEENMKELG-------FVLNRSLYQT 299
GC WIE+ NKI+ F+S ++L E + KLA++ E +K G FVL+ +
Sbjct: 700 PGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEE 759
Query: 300 KMK---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
K++ A+A GL++ G P RV K++ +CG HS C +S EREL+V+D
Sbjct: 760 KVQMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDAS 819
Query: 351 SFHHFKDGKCSCKD 364
FHHFKDG CSC D
Sbjct: 820 RFHHFKDGMCSCGD 833
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W + K Y ELL ++Q+ +D+ I IL +C L + Y
Sbjct: 328 ISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGY 387
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
T RG +S P + N +I++ CG ID A F+S K+ +SWT +IS V++G ++A
Sbjct: 388 -TIRGGLSDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKA 446
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
L++F + + T S L A
Sbjct: 447 LEVFSSMKETGLEPDYVTLVSILSA 471
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 50/95 (52%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
++Y+ L +C + + +G Q A + K G + V N L+ + R GK+ +A + F
Sbjct: 159 NTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIF 218
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
+ K+ ++W +++ + +G SEAL+ F D Q
Sbjct: 219 GNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQ 253
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 1/146 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
WN ++ + + E+ ++ DSY+ +L +C L G +
Sbjct: 24 FTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVEDLFCGAEIHGL 83
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSL-SWTFIISARVNHGHPSE 130
K G S V N L+ + ++C I+ A F +N + SW IISA +G +E
Sbjct: 84 AIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTE 143
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKA 156
AL LF + N TF +AL+A
Sbjct: 144 ALCLFSEMLKAGVVTNTYTFAAALQA 169
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 60/145 (41%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L I+ Y E +Q D SI I+ + L G + AY
Sbjct: 227 VTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAY 286
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G S+ VGN LI++ ++C + AF K+ +SWT + + +A
Sbjct: 287 AIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQA 346
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
L+L + Q ++ T S L A
Sbjct: 347 LELLRQLQMEGMDVDATMIGSILLA 371
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%)
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR 151
+CG + DA++ F E++ +W ++ V++G AL+++++ + S + TF
Sbjct: 3 GKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFP 62
Query: 152 SALKA 156
LKA
Sbjct: 63 VLLKA 67
>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
[Vitis vinifera]
Length = 1580
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 119/409 (29%), Positives = 195/409 (47%), Gaps = 54/409 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
++ W ++ C+ + + + R++ D Y+ ++ + L G Q A
Sbjct: 1173 DVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHA 1232
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K +S P VG L+++ ++CG I+DA FK +N W ++ HG+ E
Sbjct: 1233 NVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEE 1292
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A++LFK + + +F L A + GL EAY SM Y IEP EHYS +V
Sbjct: 1293 AVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLV 1352
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ALGRAG+ +E + I+ +P K I R LL + R+ GD++ K +L L+P
Sbjct: 1353 DALGRAGLVQEADKVIE-TMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDS 1411
Query: 248 -------GMYVGC-------------------------WIEIQNKIYEFVSNEELTSE-- 273
+Y WI+++N ++ FV ++ +
Sbjct: 1412 AAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQAD 1471
Query: 274 -VSDKLAEIEENMKELGFVLN--------------RSLYQTKMK-AVALGLISFPHGMPT 317
+ DK+ E+ + ++E G+V + RSLY K A+A GLIS P
Sbjct: 1472 IIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTI 1531
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RVIK++ +CG H+A +++S + ERE+V++D FHHF+DG CSC D +
Sbjct: 1532 RVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 1580
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 9/149 (6%)
Query: 12 IPWNLLLKACIKAKD------YEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
+ WN +L A + D E +H L ++ G ++ +L CLN L
Sbjct: 688 VTWNAILGAYAASVDSNDGNAQEGLH-LFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 746
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Y K GL V L+NI S+CG++ DA L F E++ + W ++ V
Sbjct: 747 EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 806
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
G EA LF ++ + + P F L
Sbjct: 807 GLEKEAFQLF--SEFHRSGLRPDEFSVQL 833
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 12 IPWNLLLKACIKAKDYE--------MVHELLERIQLCCGFIDSYSICDILNSCLNPIL-L 62
I WN ++ +C ++ E ++HE L+ D +++ +L +C + I L
Sbjct: 971 ISWNSMISSCAQSSLEEESVNLFIDLLHEGLKP--------DHFTLASVLRACSSLIDGL 1022
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
N+ Q + K G I+ V LI++ S+ GK+++A+ F++ + + W ++
Sbjct: 1023 NISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGY 1082
Query: 123 VNHGHPSEALDLF 135
+ +AL+LF
Sbjct: 1083 IIGNDGKKALELF 1095
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L + ++ L +G A + G + N L+ + S+CG + A F +TPE++
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686
Query: 112 SLSWTFIISARV-----NHGHPSEALDLFK 136
++W I+ A N G+ E L LF+
Sbjct: 687 LVTWNAILGAYAASVDSNDGNAQEGLHLFR 716
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN L C+ A D E + D+ ++ +L + L +G Q
Sbjct: 872 WNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAV 931
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K GL S +V N L+N+ S+ G A F + +SW +IS+ E+++
Sbjct: 932 KSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVN 991
Query: 134 LFKD 137
LF D
Sbjct: 992 LFID 995
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 123/407 (30%), Positives = 197/407 (48%), Gaps = 56/407 (13%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+++ ++ DYE L +QL D ++ +L +C + L +G Y+
Sbjct: 176 WNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIE 235
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K + A+G L+++ ++CG I+ A F+ PEK+ ++WT +I G +AL+
Sbjct: 236 KEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALE 295
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF + Q + TF L A + GLV E F SM Y I+PS EHY MV+ L
Sbjct: 296 LFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDML 355
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMY 250
GRAG E + I+ + P + LL + R+HG++ +A+ A +L+ELDP G Y
Sbjct: 356 GRAGRIAEAEDLIQNM-PMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTY 414
Query: 251 V-------------------------------GC-WIEIQNKIYEFVSNE---ELTSEVS 275
V GC IE+ ++EFV + +SE+
Sbjct: 415 VLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIY 474
Query: 276 DKLAEIEENMKELGFVLNR----------------SLYQTKMKAVALGLISFPHGMPTRV 319
+ L ++ +K G+V ++ SL+ K+ A+A GL+S G P RV
Sbjct: 475 ETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKL-AIAFGLLSTTPGTPIRV 533
Query: 320 IKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+K++ +C HSA +F+S + RE++V+D FHHF G CSC+D +
Sbjct: 534 VKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 580
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ + SC +L G Q + TK G S + N L+N+ S CG + A F
Sbjct: 77 DRFTFPSLFKSCG---VLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVF 133
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
K+ +SW +I A P EA+ LF+
Sbjct: 134 DKMVNKSVVSWATMIGAYAQWDLPHEAIKLFR 165
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 181/379 (47%), Gaps = 62/379 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + +LN+C N G Q + K G + N L+N+ ++CG I+DAD AF
Sbjct: 485 DPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAF 544
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P + +SW+ +I HGH EAL LF N T S L A GLV
Sbjct: 545 SEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVN 604
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F ME ++ I+P++EHY+ M++ LGR+G E +E + I P + +W LL
Sbjct: 605 EGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSI-PFEADGFVWGALLG 663
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------------GMYVGC--------------- 253
++R+H +++L + A L +L+P GM+
Sbjct: 664 AARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKE 723
Query: 254 ----WIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMK------- 302
WIEI++K+Y F+ + S SD EI + +LG +L+++ Y + ++
Sbjct: 724 PGMSWIEIKDKVYTFIVGDRSHSR-SD---EIYAKLDQLGDLLSKAGYSSIVEIDIHNVD 779
Query: 303 ---------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
AVA GLI+ P G P RV K++ +C H+ +F+ I+ RE++V+
Sbjct: 780 KSEKEKLLYHHSEKLAVAFGLIATPPGGPIRVKKNLRICVDCHTFFKFVCKIVSREIIVR 839
Query: 348 DPGSFHHFKDGKCSCKDAY 366
D FHHFKDG CSC D +
Sbjct: 840 DINRFHHFKDGSCSCGDYW 858
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L ++++ L + + + +SI ILN+C ++G +
Sbjct: 149 VSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGL 208
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M K GL N L+++ S+ G+I+ A F+ + +SW II+ V H A
Sbjct: 209 MLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLA 268
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
L L + + T N T SALKA A MG
Sbjct: 269 LMLLDEMKGSGTRPNMFTLSSALKACAAMGF 299
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 66/147 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ C+ ++ LL+ ++ + +++ L +C +G Q +
Sbjct: 250 VSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSS 309
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K S L+++ S+C +DDA A+ S P+K+ ++W +IS G +A
Sbjct: 310 LIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDA 369
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
+ LF N TT + LK+ A
Sbjct: 370 VSLFSKMFSEDIDFNQTTLSTVLKSVA 396
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 94/232 (40%), Gaps = 5/232 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ LL ++ E + + L + ++ +L +C LN+G +
Sbjct: 48 VSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGM 107
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
G S V N L+ + ++CG +DD+ F E+N +SW + S V EA
Sbjct: 108 AVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEA 167
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLV-GEAYRLFLSMEEVYHIEPSEEHYSIMV 190
+ LF K+ + + P F ++ A GL G+ R + ++ + + +V
Sbjct: 168 VGLF--KEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALV 225
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
+ +AG E + + I + W ++ +H LA LD++
Sbjct: 226 DMYSKAGEIEGAVAVFQDIAHPDVVS--WNAIIAGCVLHDCNDLALMLLDEM 275
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 3/157 (1%)
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ A++ K G P++ N L+ + S+C + A + E + +SW+ ++S V +G
Sbjct: 2 ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
EAL +F + N TF S LKA ++ + ++ M V E
Sbjct: 62 FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVH-GMAVVTGFESDGFVA 120
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ +V + G+ ++ GIV + W L
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVS--WNALF 155
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 62/147 (42%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN L+ + D+ L ++ + ++ +L S + + V Q
Sbjct: 351 IAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTI 410
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G+ S V N L++ +C ID+A F+ ++ +++T +I+A +G EA
Sbjct: 411 SIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEA 470
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L L+ Q +P S L A A
Sbjct: 471 LKLYLQMQDADIKPDPFICSSLLNACA 497
>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 776
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 177/385 (45%), Gaps = 69/385 (17%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ IL+ C + L G Q A K G +S V + L+N+ ++CG I+ A AF
Sbjct: 390 DLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATKAF 449
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P + ++WT +IS HG +A+ LF+D N TF S L A + GLV
Sbjct: 450 VEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACSYAGLVE 509
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK--GIVPGKLCPLIWRTL 222
EA R F M YHIEP +HY MV+ R G ++ FIK G P + IW +L
Sbjct: 510 EAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNE---AIWSSL 566
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP----------GMYVGC------------------- 253
+ R HG+M+LA YA D+LLEL P MY+
Sbjct: 567 VAGCRSHGNMELAFYAADRLLELKPKVIETYVLLLNMYISTGRWRDVARVRKLAKHEDVG 626
Query: 254 ------WIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQ--------- 298
WI I++K+Y F +++T + +L ++ EN+ E + YQ
Sbjct: 627 VLRDRSWIAIRDKVY-FFRADDMTHPQATELYQLLENLLEKAKAVGYEPYQNAPELLFDS 685
Query: 299 -------------------TKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTI 339
++ AVALGL+ P G RV K++ MC HS+ ++ S +
Sbjct: 686 KEGDDDKPAAAAGSLIKHHSERLAVALGLLETPPGATVRVTKNITMCRDCHSSIKYFSLL 745
Query: 340 IERELVVKDPGSFHHFKDGKCSCKD 364
RE+VV+D H FKDG+CSC D
Sbjct: 746 ANREIVVRDSKRLHKFKDGRCSCGD 770
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y++ +L++C +++G Q Y K G + ++GN L + + G ++ AFK
Sbjct: 178 YTLGGMLSACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKG 237
Query: 107 TPEKNSLSWTFIISA 121
TP+KN ++WT +IS+
Sbjct: 238 TPDKNVITWTTMISS 252
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L+ C+ L +M K G + V L+N+ RC DA F P+KN
Sbjct: 82 LLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGMPDKN 141
Query: 112 SLSWTFIISARVNHGHPSEALDLF 135
++WT +I+ + P+ AL++F
Sbjct: 142 VVTWTALITGHTLNSEPALALEVF 165
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 123/405 (30%), Positives = 196/405 (48%), Gaps = 56/405 (13%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+++ ++ DYE L +QL D ++ +L +C + L +G Y+
Sbjct: 307 WNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIE 366
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K + A+G L+++ ++CG I+ A F+ PEK+ ++WT +I G +AL+
Sbjct: 367 KEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALE 426
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF + Q + TF L A + GLV E F SM Y I+PS EHY MV+ L
Sbjct: 427 LFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDML 486
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMY 250
GRAG E + I+ + P + LL + R+HG++ +A+ A +L+ELDP G Y
Sbjct: 487 GRAGRIAEAEDLIQNM-PMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTY 545
Query: 251 V-------------------------------GC-WIEIQNKIYEFVSNE---ELTSEVS 275
V GC IE+ ++EFV + +SE+
Sbjct: 546 VLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIY 605
Query: 276 DKLAEIEENMKELGFVLNR----------------SLYQTKMKAVALGLISFPHGMPTRV 319
+ L ++ +K G+V ++ SL+ K+ A+A GL+S G P RV
Sbjct: 606 ETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKL-AIAFGLLSTTPGTPIRV 664
Query: 320 IKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+K++ +C HSA +F+S + RE++V+D FHHF G CSC+D
Sbjct: 665 VKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRD 709
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 78/176 (44%), Gaps = 8/176 (4%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHE---LLERIQLCCGFIDSYSICDILNSCLNPILL 62
+++ + W ++ A + +++ HE L R+++ + ++ ++L +C L
Sbjct: 198 MVNKSVVSWATMIGAYAQ---WDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDL 254
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
Q Y+ + G+ H + + L+++ +CG A F PEKN W +I+
Sbjct: 255 ETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGH 314
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL--VGEAYRLFLSMEEV 176
V EAL LF + Q + T S L A +G +G+ +++ E++
Sbjct: 315 VEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKI 370
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ + SC +L G Q + TK G S + N L+N+ S CG + A F
Sbjct: 139 DRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVF 195
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
K+ +SW +I A P EA+ LF+ + N T + L A A
Sbjct: 196 DKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACA 249
>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 115/369 (31%), Positives = 186/369 (50%), Gaps = 55/369 (14%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L+SC L++G Y+ K G + V LI++ ++CG +DDA F+ P+++
Sbjct: 219 VLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRD 278
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
+ +W+ II A HG +A+ + + + + TF L A + GLV E + F
Sbjct: 279 TQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFH 338
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231
M Y I PS +HY MV+ LGRAG +E +FI + P K P++WRTLL + HG+
Sbjct: 339 GMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDEL-PIKPTPILWRTLLSACSTHGN 397
Query: 232 MKLAKYALDKLLELDP---GMYV---------GCW-----------------------IE 256
+++ K ++++ ELD G YV G W IE
Sbjct: 398 VEMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIE 457
Query: 257 IQNKIYEFVSNEELTSEVSDKLAEIEENMKEL---GFVLNRSL----------------Y 297
+ N ++EF + E + S + ++E +KEL G+V + SL Y
Sbjct: 458 VNNVVHEFFAGEGVHSTSTTLHRALDELVKELKSAGYVPDTSLVFYADMEDEEKEIILRY 517
Query: 298 QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKD 357
++ A+ GL++ P G RV+K++ +CG H+A +F+S I R+++++D FHHFKD
Sbjct: 518 HSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKD 577
Query: 358 GKCSCKDAY 366
GKCSC D +
Sbjct: 578 GKCSCGDYW 586
>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1611
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/407 (29%), Positives = 193/407 (47%), Gaps = 54/407 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
++ W ++ C++ E +++L D Y+ ++ +C L G Q A
Sbjct: 1204 DVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHA 1263
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K P V L+++ ++CG I+DA FK T + SW +I HG+ E
Sbjct: 1264 NIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKE 1323
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL FK + R + TF L A + GLV EAY F SM++ Y IEP EHYS +V
Sbjct: 1324 ALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLV 1383
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+AL RAG EE + I + P + ++RTLL + RV D + K +KLL L+P
Sbjct: 1384 DALSRAGRIEEAEKVISSM-PFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDS 1442
Query: 248 -------GMYVGC-------------------------WIEIQNKIYEFVSNE---ELTS 272
+Y W++++NK++ FV+ + E T
Sbjct: 1443 AAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETD 1502
Query: 273 EVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPT 317
+ +K+ I + ++E G+V + Y ++ A+A GL+ P
Sbjct: 1503 VIYNKVEYIMKRIREEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTL 1562
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
RVIK++ +CG HSA +++S + +RE+V++D FHHF++G CSC D
Sbjct: 1563 RVIKNLRVCGDCHSAIKYISKVFKREIVLRDANRFHHFRNGICSCGD 1609
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/318 (19%), Positives = 129/318 (40%), Gaps = 34/318 (10%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ I + D+ L +Q D ++ + + + L G Q A +
Sbjct: 1106 WNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVV 1165
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
KRG V + ++++ +CG+++ A F P + ++WT +IS V +G A
Sbjct: 1166 KRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHA-- 1223
Query: 134 LFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVY-HIEPSEEHYSIMV 190
LF Q R + + P TF + +KA +L+ + + ++ ++ ++ +P + +V
Sbjct: 1224 LFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFV--MTSLV 1281
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLA----KYALDKLLELD 246
+ + G E+ K ++ W +++ HG+ K A KY + + D
Sbjct: 1282 DMYAKCGNIEDARGLFKRTNTRRIAS--WNAMIVGLAQHGNAKEALQFFKYMKSRGVMPD 1339
Query: 247 PGMYVGCW---------IEIQNKIYEFVSNEELTSEV------------SDKLAEIEENM 285
++G E Y N + E+ + ++ E E+ +
Sbjct: 1340 RVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVI 1399
Query: 286 KELGFVLNRSLYQTKMKA 303
+ F + S+Y+T + A
Sbjct: 1400 SSMPFEASASMYRTLLNA 1417
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 19/162 (11%)
Query: 12 IPWNLLLKACIKAKDYE-----MVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG- 65
I WN ++ C + E VH L + + D +++ +L +C + L G
Sbjct: 1002 ISWNTMISGCTLSGLEECSVGMFVHLLRDSL-----LPDQFTVASVLRACSS---LEGGY 1053
Query: 66 ---TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
TQ A K G++ V LI++ S+ GK+++A+ F + + SW I+
Sbjct: 1054 YLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGY 1113
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ G +AL L+ Q + T +A KA GLVG
Sbjct: 1114 IVSGDFPKALRLYILMQESGERSDQITLVNAAKAAG--GLVG 1153
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL------ 61
SDV I WN L ++ E E + I+S CD L + +
Sbjct: 898 SDV-IVWNKALSRFLQRG------EAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNC 950
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L +G Q + + GL +VGNCLIN+ + G + A F E + +SW +IS
Sbjct: 951 LELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISG 1010
>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
Length = 797
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 187/374 (50%), Gaps = 56/374 (14%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y+ + SC L G Q A + + G S + GN LI + +RCG +D A F +
Sbjct: 426 YAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFIN 485
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
P +++SW +I+A HG ++A++LF++ + +F + + A + GLV E
Sbjct: 486 MPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEG 545
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226
+ F SM VY + P EEHY+ +++ L RAG F E E ++ + P + IW LL
Sbjct: 546 RKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESM-PFEPGAPIWEALLAGC 604
Query: 227 RVHGDMKLAKYALDKLLELDP---GMYV-------------------------------G 252
R+HG++ L A ++L EL P G YV G
Sbjct: 605 RIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPG 664
Query: 253 C-WIEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGFVLNR-------------- 294
C WIE++NK++ F+ +N ++ + L ++ M+++G+V +
Sbjct: 665 CSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEH 724
Query: 295 --SLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
S + K+ AVA G + PHG RV K++ +CG H+A +FMS ++ RE+VV+D F
Sbjct: 725 ELSTHSEKL-AVAYGFMKLPHGATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRF 783
Query: 353 HHFKDGKCSCKDAY 366
HHF+DGKCSC D +
Sbjct: 784 HHFRDGKCSCGDYW 797
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ Y E+ ++ + +D ++ +++ C N +G + AY
Sbjct: 255 VAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAY 314
Query: 72 MTKRGLISHPA------VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
K +++PA V N LI +CGK+D A F PE++ +SW I+S VN
Sbjct: 315 FLK--TVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNV 372
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174
EA F + + N ++ + A +G EA + F M+
Sbjct: 373 RCMDEAKSFFNEMPEK----NILSWIIMISGLAQIGFAEEALKFFNRMK 417
>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
Length = 649
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 204/408 (50%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN+++ A ++ + +++L +S + +L + G A
Sbjct: 243 VTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHAC 302
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G +S+ VGN LI++ ++CG++D ++ F K+++SW ++S HGH A
Sbjct: 303 IIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRA 362
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF Q ++ +F S L A GLV E ++F SM + YHI+P EHY+ MV+
Sbjct: 363 IALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVD 422
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
LGRAG+F+E L FIK ++P + +W LL S R+H ++KL + ALD L++L+P
Sbjct: 423 LLGRAGLFDETLGFIK-VMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPA 481
Query: 248 ------GMYV------------------------GC-WIEIQNKIYEFVSNEELTSEVSD 276
+Y GC W+E++NK++ F ++ ++
Sbjct: 482 HFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLES 541
Query: 277 K---LAEIEENMKELGFVLNRS--------------LY-QTKMKAVALGLISFPHGMPTR 318
+ E M+++G+V +RS LY ++ A+ L++ P G +
Sbjct: 542 MHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQ 601
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +C H+ +F+S I R ++V+D FHHF+DG CSC D +
Sbjct: 602 IVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 649
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 126/404 (31%), Positives = 191/404 (47%), Gaps = 54/404 (13%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ + E L + +Q C + ++ IL++C L++G +
Sbjct: 377 WNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLIN 436
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ S+ V LI++ ++CG I +A F PEKN+++W +IS HG+ EAL+
Sbjct: 437 RESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALN 496
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF + S TF S L A + GLV E +F SM + EP EHY+ MV+ L
Sbjct: 497 LFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLL 556
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMY 250
GRAG ++ L+FI+ + P + P +W LL + +H D LA+ A DKL ELDP G Y
Sbjct: 557 GRAGNLDKALDFIRKM-PVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYY 615
Query: 251 V-------------------------------GC-WIEIQNKIYEFVSNEELTSEVSDKL 278
V GC IE+ N ++ F S ++ + +
Sbjct: 616 VLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIY 675
Query: 279 AEIEE---NMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTRVI 320
A +E+ M+E GF ++ A+A GLI+ G R+I
Sbjct: 676 AMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRII 735
Query: 321 KSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
K++ +C H+A +F+S I ER +VV+D FHHFKDG CSC D
Sbjct: 736 KNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGD 779
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%)
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
+ TK G++S+ +V L + SR +I+ A L F + EK+ SW +IS +G
Sbjct: 331 HGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLT 390
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+A+ LF++ Q NP T S L A A +G
Sbjct: 391 EKAISLFQEMQKCEVRPNPVTVTSILSACAQLG 423
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 14 WNLLLKACIKAKDY-EMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN ++ +K + E + + ++ GF DS ++ +L L +G Q
Sbjct: 175 WNTMVSGLVKNSCFDEAILIFGDMVKGGIGF-DSTTVAAVLPGVAELQDLALGMGIQCLA 233
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K G SH V L + S+CG+I+ A L F + + +S+ +IS + ++
Sbjct: 234 MKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSV 293
Query: 133 DLFKD 137
LFK+
Sbjct: 294 RLFKE 298
>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Vitis vinifera]
Length = 709
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 197/410 (48%), Gaps = 58/410 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ C++ ++ + +++ + + S I+ +C + L++G Q Y
Sbjct: 303 ISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGY 362
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + + + L+++ ++CG I A F + +SWT +I HGH +A
Sbjct: 363 IIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDA 422
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LFK + N F + L A + GLV EA++ F SM + Y I P EHY+ + +
Sbjct: 423 ISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVAD 482
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPL--IWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
LGR G EE EFI + + P +W TLL + RVH +++LA+ KL +DP
Sbjct: 483 LLGRVGRLEEAYEFISDM---HIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQN 539
Query: 248 -GMYV-------------------------------GC-WIEIQNKIYEFVSNEE---LT 271
G YV C WIEI+NK++ FV+ ++
Sbjct: 540 IGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYY 599
Query: 272 SEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMP 316
+++ L + E M+ G+VL+ + ++ A+ G+IS P G
Sbjct: 600 DRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTT 659
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV K++ +C H+A +F+S I+ RE+VV+D FHHFKDGKCSC D +
Sbjct: 660 IRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS+++ +L + L G + Y + G + +G+ LI++ ++C ++DD+ F
Sbjct: 235 DSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVF 294
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
P+ + +SW II+ V +G E L F+ N +F S + A A
Sbjct: 295 YMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACA 348
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 194/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN L+ ++ E ++ ++ + ++ +++ N + G Q A
Sbjct: 583 ISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAM 642
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M K G S N LI + S+CG I+DA F PEKN +SW +I+ HG+ SEA
Sbjct: 643 MIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEA 702
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF++ + N TF L A + +GLV E F SM + + + P EHY +V+
Sbjct: 703 VSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVD 762
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
LGRA + EFI+ + P + +IWRTLL + VH ++++ ++A LLEL+P
Sbjct: 763 LLGRAALLCCAREFIEEM-PIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSA 821
Query: 248 ------GMYV-------------------------GCWIEIQNKIYEFVSNEE---LTSE 273
MY WIE++N I+ F + L +
Sbjct: 822 TYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQ 881
Query: 274 VSDKLAEIEENMKELGFVLNR---------------SLYQTKMKAVALGLISFPHGMPTR 318
+ + + ++ E E+G+V +R + ++ AVA GL+S + MP R
Sbjct: 882 IYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIR 941
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
VIK++ +C H+ +F+S I R +VV+D FHHF+ G CSCKD +
Sbjct: 942 VIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 5/187 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+ +++C LN G Q A G ++GN L+++ +RCG+ DA LAF
Sbjct: 515 DNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAF 574
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ K+++SW +IS GH EAL +F N TF SA+ A A +
Sbjct: 575 EKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIK 634
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV-LEFIKGIVPGKLCPLIWRTLL 223
+ ++ M + + + E ++++ + G E+ EF + +P K + W ++
Sbjct: 635 QGKQIHAMMIKTGY-DSETEASNVLITLYSKCGSIEDAKREFFE--MPEKNV-VSWNAMI 690
Query: 224 LSSRVHG 230
HG
Sbjct: 691 TGYSQHG 697
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 74/147 (50%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN++L A + + + + ++Q+ + Y+ IL +C + L++G Q
Sbjct: 381 VLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQ 440
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + V + LI++ ++ G++D A + E++ +SWT +I+ H +EA
Sbjct: 441 VIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEA 500
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L LF++ + + + F SA+ A A
Sbjct: 501 LKLFQEMENQGIRSDNIGFSSAISACA 527
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 45 DSYSICDILNSCLN-PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
D + +L +C V Q A + G S P V N LI++ S+ G +D A L
Sbjct: 110 DESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLV 169
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
F+ K+S+SW +IS +G EA+ LF P F S L A
Sbjct: 170 FERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSA 222
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 44/105 (41%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+ C N L + A + K G +G+ LI+I G++D+A F P N
Sbjct: 16 LFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSN 75
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
W +IS + S+ L LF + + +TF S L+A
Sbjct: 76 VSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120
>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 960
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/357 (31%), Positives = 179/357 (50%), Gaps = 46/357 (12%)
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
+ +C + ++ +G Q + TK GL + +V N ++ + SRCG I +A F S +K+
Sbjct: 518 IRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDL 577
Query: 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS 172
+SW +++A +G + +D F+D N ++ S L + MGLV E F S
Sbjct: 578 ISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDS 637
Query: 173 MEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDM 232
M V+ I P+ EH+S MV+ LGRAG+ E+ + I+G+ P K +W LL S RVH D+
Sbjct: 638 MTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGM-PFKPNATVWSALLGSCRVHHDL 696
Query: 233 KLAKYALDKLLELD----------PGMYV------------------------GC-WIEI 257
+LA+ A KL+ELD MY GC WIE+
Sbjct: 697 RLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEV 756
Query: 258 QNKIYEFVSNEELTSEVSDKLAEIEENMKEL----------GFVLNRSLYQTKMKAVALG 307
N+++ F +E ++ + ++EE MK + V Y ++ A A G
Sbjct: 757 DNRVHVFTVDETSHPQIKEVYLKLEEMMKMIEDTGKYITVESSVHRSKKYHSEKLAFAFG 816
Query: 308 LISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
L++ P MP V+K++ +C H + +S + REL+++D FHHFKDG CSCKD
Sbjct: 817 LLNLPSWMPIHVMKNLRVCDDCHLVIKLLSLVTSRELIMRDGYRFHHFKDGICSCKD 873
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 4/170 (2%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
SL I WN L+ + E L +++ +D + + IL C P +
Sbjct: 338 SLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYAST 397
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Y K G+ S VGN +I + ++CG D ADL F+ P +N++SWT +I+A
Sbjct: 398 GELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSR 457
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174
G +A F R N T+ S L Y G E +L++SM
Sbjct: 458 SGDIGKARGYFDMMPER----NIVTWNSMLSTYVQNGFSEEGLKLYVSMR 503
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCC-GFIDSY-SICDILNSCLNPILLNVGTQA 68
E+ WN L+ I ++ V L +++C GF ++ + +L++C + L G
Sbjct: 243 EVSWNTLIS--IFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHL 300
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A + + GN LI++ ++CG +D A FKS E + +SW +I+ V+ G
Sbjct: 301 HARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLG 360
Query: 129 SEALDLFKDKQWRYTSM 145
+AL LF Q R +S+
Sbjct: 361 EDALILF--NQMRRSSV 375
>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
Length = 497
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 187/376 (49%), Gaps = 54/376 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
I +++ +L+ + + G Q + K G S+ + N LI++ SRCG I+ A
Sbjct: 123 ISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQV 182
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F ++N +SWT +I+ HG + AL++F T N T+ + L A + +G++
Sbjct: 183 FNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMI 242
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E + F SM + + I P EHY+ MV+ LGR+G+ E +EFI + P L+WRTLL
Sbjct: 243 SEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM-PLMADALVWRTLL 301
Query: 224 LSSRVHGDMKLAKYALDKLLEL---DPGMYV----------------------------- 251
+ RVHG+ +L ++A + +LE DP Y+
Sbjct: 302 GACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIK 361
Query: 252 --GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS---------- 295
GC WIE++N+++ F E ++ +L ++ +KE+G++ +
Sbjct: 362 EAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQ 421
Query: 296 ----LYQTKMK-AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
L+Q K AVA GLIS P R+ K++ +CG H+A +++S RE+VV+D
Sbjct: 422 KEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSN 481
Query: 351 SFHHFKDGKCSCKDAY 366
FHH K+G CSC D +
Sbjct: 482 RFHHIKNGVCSCNDYW 497
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
VGN LI++ +R G+++DA AF EKN +S+ I+ + EA LF +
Sbjct: 61 VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 120
Query: 143 TSMNPTTFRSALKAYALMGLVGEAYRL 169
++ TF S L A +G +G+ ++
Sbjct: 121 IGISAFTFASLLSGAASIGAMGKGEQI 147
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 95 GKIDDADLAFKSTPEKNSLSWTFIISARVNHGH-PSEALDLF 135
G +DD+ F+ PE N +SWT II+A V G EA++LF
Sbjct: 9 GSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELF 50
>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 187/376 (49%), Gaps = 54/376 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
I +++ +L+ + + G Q + K G S+ + N LI++ SRCG I+ A
Sbjct: 453 ISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQV 512
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F ++N +SWT +I+ HG + AL++F T N T+ + L A + +G++
Sbjct: 513 FNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMI 572
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E + F SM + + I P EHY+ MV+ LGR+G+ E +EFI + P L+WRTLL
Sbjct: 573 SEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM-PLMADALVWRTLL 631
Query: 224 LSSRVHGDMKLAKYALDKLLEL---DPGMYV----------------------------- 251
+ RVHG+ +L ++A + +LE DP Y+
Sbjct: 632 GACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIK 691
Query: 252 --GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS---------- 295
GC WIE++N+++ F E ++ +L ++ +KE+G++ +
Sbjct: 692 EAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQ 751
Query: 296 ----LYQTKMK-AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
L+Q K AVA GLIS P R+ K++ +CG H+A +++S RE+VV+D
Sbjct: 752 KEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSN 811
Query: 351 SFHHFKDGKCSCKDAY 366
FHH K+G CSC D +
Sbjct: 812 RFHHIKNGVCSCNDYW 827
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 42 GFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC---GKI 97
G++ D ++ +L++C LL +G Q + + + GL VG L+++ ++C G +
Sbjct: 244 GYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSV 303
Query: 98 DDADLAFKSTPEKNSLSWTFIISARVNHGH-PSEALDLFKDKQWRYTSMNPTTFRSALKA 156
DD+ F+ PE N +SWT II+A V G EA++LF + N +F S LKA
Sbjct: 304 DDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKA 363
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 11/164 (6%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI------DSYSICDILNSCLNPILLNVG 65
+ W ++ A +++ + + E I+L C I + +S +L +C N G
Sbjct: 319 MSWTAIITAYVQSGECDK-----EAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTG 373
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Q +Y K G+ S VGN LI++ +R G+++DA AF EKN +S+ I+ +
Sbjct: 374 EQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKN 433
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
EA LF + ++ TF S L A +G +G+ ++
Sbjct: 434 LKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQI 477
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 8/163 (4%)
Query: 12 IPWNLLLKACI--KAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQA 68
+ W+ ++ +C + +++ + L+ ++L GF + Y ++ +C N VG
Sbjct: 112 VSWSAMV-SCFANNSMEWQAIWTFLDMLEL--GFYPNEYCFAAVIRACSNANYAWVGEII 168
Query: 69 QAYMTKRGLISHPAVGNC-LININSR-CGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
++ K G + C LI++ + G + A F PE+N ++WT +I+ G
Sbjct: 169 YGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLG 228
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
+A+DLF D + + T+ S L A +GL+ +L
Sbjct: 229 CARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQL 271
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+ +YSI +L SC+ +G + + GL V N LI++ S+CG + A L
Sbjct: 44 LTTYSI--LLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 101
Query: 104 FKSTPEKNSL-SWTFIISARVNHGHPSEALDLFKD 137
F+ K L SW+ ++S N+ +A+ F D
Sbjct: 102 FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLD 136
>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 629
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 187/376 (49%), Gaps = 54/376 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
I +++ +L+ + + G Q + K G S+ + N LI++ SRCG I+ A
Sbjct: 255 ISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQV 314
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F ++N +SWT +I+ HG + AL++F T N T+ + L A + +G++
Sbjct: 315 FNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMI 374
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E + F SM + + I P EHY+ MV+ LGR+G+ E +EFI + P L+WRTLL
Sbjct: 375 SEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM-PLMADALVWRTLL 433
Query: 224 LSSRVHGDMKLAKYALDKLLEL---DPGMYV----------------------------- 251
+ RVHG+ +L ++A + +LE DP Y+
Sbjct: 434 GACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIK 493
Query: 252 --GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS---------- 295
GC WIE++N+++ F E ++ +L ++ +KE+G++ +
Sbjct: 494 EAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQ 553
Query: 296 ----LYQTKMK-AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
L+Q K AVA GLIS P R+ K++ +CG H+A +++S RE+VV+D
Sbjct: 554 KEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSN 613
Query: 351 SFHHFKDGKCSCKDAY 366
FHH K+G CSC D +
Sbjct: 614 RFHHIKNGVCSCNDYW 629
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 42 GFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC---GKI 97
G++ D ++ +L++C LL +G Q + + + GL VG L+++ ++C G +
Sbjct: 46 GYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSV 105
Query: 98 DDADLAFKSTPEKNSLSWTFIISARVNHGH-PSEALDLFKDKQWRYTSMNPTTFRSALKA 156
DD+ F+ PE N +SWT II+A G EA++LF + N +F S LKA
Sbjct: 106 DDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKA 165
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 6/141 (4%)
Query: 35 ERIQLCCGFI------DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLI 88
E I+L C I + +S +L +C N G Q +Y K G+ S VGN LI
Sbjct: 139 EAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLI 198
Query: 89 NINSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT 148
++ +R G+++DA AF EKN +S+ I+ + EA LF + ++
Sbjct: 199 SMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAF 258
Query: 149 TFRSALKAYALMGLVGEAYRL 169
TF S L A +G +G+ ++
Sbjct: 259 TFASLLSGAASIGAMGKGEQI 279
>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 187/376 (49%), Gaps = 54/376 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
I +++ +L+ + + G Q + K G S+ + N LI++ SRCG I+ A
Sbjct: 260 ISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQV 319
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F ++N +SWT +I+ HG + AL++F T N T+ + L A + +G++
Sbjct: 320 FNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMI 379
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E + F SM + + I P EHY+ MV+ LGR+G+ E +EFI + P L+WRTLL
Sbjct: 380 SEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM-PLMADALVWRTLL 438
Query: 224 LSSRVHGDMKLAKYALDKLLEL---DPGMYV----------------------------- 251
+ RVHG+ +L ++A + +LE DP Y+
Sbjct: 439 GACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIK 498
Query: 252 --GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS---------- 295
GC WIE++N+++ F E ++ +L ++ +KE+G++ +
Sbjct: 499 EAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQ 558
Query: 296 ----LYQTKMK-AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
L+Q K AVA GLIS P R+ K++ +CG H+A +++S RE+VV+D
Sbjct: 559 KEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSN 618
Query: 351 SFHHFKDGKCSCKDAY 366
FHH K+G CSC D +
Sbjct: 619 RFHHIKNGVCSCNDYW 634
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 42 GFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC---GKI 97
G++ D ++ +L++C LL +G Q + + + GL VG L+++ ++C G +
Sbjct: 51 GYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSV 110
Query: 98 DDADLAFKSTPEKNSLSWTFIISARVNHGH-PSEALDLFKDKQWRYTSMNPTTFRSALKA 156
DD+ F+ PE N +SWT II+A G EA++LF + N +F S LKA
Sbjct: 111 DDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKA 170
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 6/141 (4%)
Query: 35 ERIQLCCGFI------DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLI 88
E I+L C I + +S +L +C N G Q +Y K G+ S VGN LI
Sbjct: 144 EAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLI 203
Query: 89 NINSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT 148
++ +R G+++DA AF EKN +S+ I+ + EA LF + ++
Sbjct: 204 SMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAF 263
Query: 149 TFRSALKAYALMGLVGEAYRL 169
TF S L A +G +G+ ++
Sbjct: 264 TFASLLSGAASIGAMGKGEQI 284
>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 128/405 (31%), Positives = 194/405 (47%), Gaps = 56/405 (13%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ ++ EM L + + + +I IL++C L+ G +
Sbjct: 374 WNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIK 433
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ L + V LI++ ++CG I +A F T EKN+++W +I HG+ EAL
Sbjct: 434 SKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALK 493
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF + + TF S L A + GLV E +F +M Y IEP EHY+ MV+ L
Sbjct: 494 LFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDIL 553
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMY 250
GRAG E+ LEFI+ + P + P +W TLL + +H D LA+ A ++L ELDP G Y
Sbjct: 554 GRAGQLEKALEFIRKM-PVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYY 612
Query: 251 V-------------------------------GC-WIEIQNKIYEFVSNEELTSEVSDKL 278
V GC IE+ + FV + S+ +
Sbjct: 613 VLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSIY 672
Query: 279 AEIEE---NMKELGFV----------------LNRSLYQTKMKAVALGLISFPHGMPTRV 319
A++EE M+E+G+ L +++ K+ A+A GLI+ G R+
Sbjct: 673 AKLEELTGKMREMGYQSETVTALHDVEEEEKELMFNVHSEKL-AIAFGLITTEPGTEIRI 731
Query: 320 IKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
IK++ +C H+A +F+S I ER +VV+D FHHFKDG CSC D
Sbjct: 732 IKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFKDGICSCGD 776
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 9/180 (5%)
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
Q + K G I P+V L I SR +ID A F + EK +W +IS G
Sbjct: 328 QGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLT 387
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
A+ LF++ + NP T S L A A +G A S+ ++ + E++ +
Sbjct: 388 EMAISLFQEMMTTEFTPNPVTITSILSACAQLG----ALSFGKSVHQLIKSKNLEQNIYV 443
Query: 189 ---MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
+++ + G E + + + + W T++ +HG A +++L L
Sbjct: 444 STALIDMYAKCGNISEASQLFD--LTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHL 501
>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 809
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 187/376 (49%), Gaps = 54/376 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
I +++ +L+ + + G Q + K G S+ + N LI++ SRCG I+ A
Sbjct: 435 ISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQV 494
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F ++N +SWT +I+ HG + AL++F T N T+ + L A + +G++
Sbjct: 495 FNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMI 554
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E + F SM + + I P EHY+ MV+ LGR+G+ E +EFI + P L+WRTLL
Sbjct: 555 SEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM-PLMADALVWRTLL 613
Query: 224 LSSRVHGDMKLAKYALDKLLEL---DPGMYV----------------------------- 251
+ RVHG+ +L ++A + +LE DP Y+
Sbjct: 614 GACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIK 673
Query: 252 --GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS---------- 295
GC WIE++N+++ F E ++ +L ++ +KE+G++ +
Sbjct: 674 EAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQ 733
Query: 296 ----LYQTKMK-AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
L+Q K AVA GLIS P R+ K++ +CG H+A +++S RE+VV+D
Sbjct: 734 KEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSN 793
Query: 351 SFHHFKDGKCSCKDAY 366
FHH K+G CSC D +
Sbjct: 794 RFHHIKNGVCSCNDYW 809
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 42 GFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC---GKI 97
G++ D ++ +L++C LL +G Q + + + GL VG L+++ ++C G +
Sbjct: 226 GYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSV 285
Query: 98 DDADLAFKSTPEKNSLSWTFIISARVNHGH-PSEALDLFKDKQWRYTSMNPTTFRSALKA 156
DD+ F+ PE N +SWT II+A V G EA++LF + N +F S LKA
Sbjct: 286 DDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKA 345
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 11/164 (6%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI------DSYSICDILNSCLNPILLNVG 65
+ W ++ A +++ + + E I+L C I + +S +L +C N G
Sbjct: 301 MSWTAIITAYVQSGECDK-----EAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTG 355
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Q +Y K G+ S VGN LI++ +R G+++DA AF EKN +S+ I+ +
Sbjct: 356 EQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKN 415
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
EA LF + ++ TF S L A +G +G+ ++
Sbjct: 416 LKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQI 459
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 8/163 (4%)
Query: 12 IPWNLLLKACI--KAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQA 68
+ W+ ++ +C + +++ + L+ ++L GF + Y ++ +C N VG
Sbjct: 94 VSWSAMV-SCFANNSMEWQAIWTFLDMLEL--GFYPNEYCFAAVIRACSNANYAWVGEII 150
Query: 69 QAYMTKRGLISHPAVGNC-LININSR-CGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
++ K G + C LI++ + G + A F PE+N ++WT +I+ G
Sbjct: 151 YGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLG 210
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
+A+DLF D + + T+ S L A +GL+ +L
Sbjct: 211 CARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQL 253
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+ +YSI +L SC+ +G + + GL V N LI++ S+CG + A L
Sbjct: 26 LTTYSI--LLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 83
Query: 104 FKSTPEKNSL-SWTFIISARVNHGHPSEALDLFKD 137
F+ K L SW+ ++S N+ +A+ F D
Sbjct: 84 FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLD 118
>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/409 (28%), Positives = 204/409 (49%), Gaps = 54/409 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
E+ WN+++ A ++ + +++L +S + +L + G A
Sbjct: 598 EVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHA 657
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ + G +S+ VGN LI++ ++CG++ ++ F K+++SW ++S HGH
Sbjct: 658 CIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDR 717
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+ LF Q ++ +F S L A GLV E ++F SM + YHI+P EHY+ MV
Sbjct: 718 AIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMV 777
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG+F+E L FIK ++P + +W LL S R+H ++KL + ALD L++L+P
Sbjct: 778 DLLGRAGLFDETLGFIK-VMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNP 836
Query: 248 -------GMYV------------------------GC-WIEIQNKIYEFVSNEELTSEVS 275
+Y GC W+E++NK++ F ++ ++
Sbjct: 837 AHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLE 896
Query: 276 DK---LAEIEENMKELGFVLNRS--------------LY-QTKMKAVALGLISFPHGMPT 317
+ E M+++G+V +RS LY ++ A+ L++ P G
Sbjct: 897 SMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTI 956
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+++K++ +C H+ +F+S I R ++V+D FHHF+DG CSC D +
Sbjct: 957 QIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 1/156 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ + D ++ +++L D+ ++ ++ +C L+ GT
Sbjct: 497 VTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGL 556
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP-EKNSLSWTFIISARVNHGHPSE 130
+ K G S V N LI++ ++CG + A+ F T K+ ++W II+A + +GH E
Sbjct: 557 IVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKE 616
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
A+ F + N TF S L A A + E
Sbjct: 617 AISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREG 652
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 11 EIPWNLLLKACIKAKDY----EMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVG 65
I WN +++A ++K Y EM + ++E+ G D Y+ +L +C + L G
Sbjct: 94 RILWNSMIRAYTRSKQYNEALEMYYCMVEK-----GLEPDKYTFTFVLKACTGALNLQEG 148
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ +RGL +G L+++ S+ G + A F P+++ ++W +I+
Sbjct: 149 VWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQS 208
Query: 126 GHPSEALDLFKDKQ 139
P EA+D F+ Q
Sbjct: 209 EDPCEAVDFFRSMQ 222
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 72/158 (45%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
++ ++ W ++ + V EL ++++L I+ S + I L G
Sbjct: 289 MVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKG 348
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ ++ + S V L+ + ++CG+ + A F ++ ++W+ II+A V
Sbjct: 349 KEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQT 408
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
G+P EAL LF++ Q + N T S L A A + L+
Sbjct: 409 GYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLL 446
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ A ++ E L + +Q + ++ IL +C + LL +G +
Sbjct: 396 VAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCF 455
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + S + G L+++ ++CG A F ++ ++W +I+ G P A
Sbjct: 456 TVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNA 515
Query: 132 LDLFKDKQWRYTSMNP 147
+D+F + R +++NP
Sbjct: 516 IDMF--YKLRLSAINP 529
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 2/147 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ +++D + +QL S S+ ++ + + Y
Sbjct: 196 VAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGY 255
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ +R S AV N LI++ S+CG +D A F +++ +SW +++ ++G E
Sbjct: 256 VFRRDFSS--AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEV 313
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L+LF + +N + SA A A
Sbjct: 314 LELFDKMKLGNVRINKVSAVSAFLAAA 340
Score = 37.7 bits (86), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 52 ILNSC--LNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE 109
+L+SC LNP+L Q A + G H ++ + LIN+ S K D A F STP
Sbjct: 38 LLSSCKHLNPLL-----QIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPN 91
Query: 110 KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ + W +I A +EAL+++ + + TF LKA
Sbjct: 92 PSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKA 138
>gi|302781198|ref|XP_002972373.1| hypothetical protein SELMODRAFT_97177 [Selaginella moellendorffii]
gi|300159840|gb|EFJ26459.1| hypothetical protein SELMODRAFT_97177 [Selaginella moellendorffii]
Length = 485
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/409 (27%), Positives = 203/409 (49%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ C++ Y + ++L D+ + +L++C N L+ G + A
Sbjct: 78 VSWTCLIVGCVQLGSYREAFHFFKLMELQGIHADTVTYASLLDACSNLASLSQGRKLHAR 137
Query: 72 MTKRGLISHPAV-GNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ + GL+ V ++ + S+CG++ +A F EKN ++W+ II A +G S
Sbjct: 138 IAELGLLEADVVLQTSILTMYSKCGRLGEARGIFDRIGEKNIVAWSAIIIAYAQNGDCST 197
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL LF + + TTF S L A + GLV +AY F +M+ +EP HY +V
Sbjct: 198 ALKLFWKMEQAGQKASETTFVSVLYACSHAGLVDDAYYYFTTMKSERKLEPLPGHYGCIV 257
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM- 249
+ LGRAG + E I+ + + ++W TLL + + HGDMKLA+ A +++ ELDPG
Sbjct: 258 DLLGRAGRLADAEELIQRMKAPQ-SGVLWTTLLGACKTHGDMKLAERAAERIRELDPGSA 316
Query: 250 --YV--------------------------------GCWIEIQNKIYEFVSNEELTSEVS 275
YV W+E++ K++EFV+ ++ ++
Sbjct: 317 TPYVLLSNVYSEAGRWDLAASVRKRMDDMKVKKPAGKSWVEVRGKLHEFVAGDQSHPKIG 376
Query: 276 DKLAEIEENM---KELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPT 317
+ + E++ + KE G+ ++S Y ++ A+ +GL+ P G P
Sbjct: 377 EIVLELKRLLALIKEAGYAADKSATLHNAEEEEKEGLLYYHSEKLAMVMGLLHSPRGEPV 436
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+V+K++ +C H+A +F+S + +R++V++D FHHF+ G+CSC D +
Sbjct: 437 QVVKNLRVCSDCHTAAKFISKVEDRQIVLRDTKQFHHFEHGRCSCGDYW 485
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 83/195 (42%), Gaps = 9/195 (4%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+++++ + +C + L+ G + A + G + V N L++ ++C +DD F
Sbjct: 9 NNHTLSIAIAACSALVDLSRGRKIHASLEGCGFQADDHVKNTLMDFYTKCDSLDDVKKVF 68
Query: 105 KST-PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
+S + +SWT +I V G EA FK + + + T+ S L A + + +
Sbjct: 69 RSMGGDAKVVSWTCLIVGCVQLGSYREAFHFFKLMELQGIHADTVTYASLLDACSNLASL 128
Query: 164 GEAYRLFLSMEEVYHIEPS---EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWR 220
+ +L + E+ +E + M GR G + + I G+ + W
Sbjct: 129 SQGRKLHARIAELGLLEADVVLQTSILTMYSKCGRLGEARGIFDRI-----GEKNIVAWS 183
Query: 221 TLLLSSRVHGDMKLA 235
++++ +GD A
Sbjct: 184 AIIIAYAQNGDCSTA 198
>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 705
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 116/408 (28%), Positives = 200/408 (49%), Gaps = 61/408 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ C++ ++ ++ + SYS I+ +C + L++G Q Y
Sbjct: 306 ISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGY 365
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+T+ G + + + L+++ ++CG I A F ++ +SWT +I HG +A
Sbjct: 366 ITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDA 425
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
++LF+ M ++ L A + GLV EA++ F SM + I P EHY+ + +
Sbjct: 426 IELFEQ-------METEGIKAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSD 478
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG EE +FI G+ G IW TLL + RVH ++ +A+ +++LE+DP G
Sbjct: 479 LLGRAGRLEEAYDFICGMHIGPTGS-IWATLLSACRVHKNIDMAEKVANRILEVDPNNTG 537
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTSE 273
Y+ C WIE++NK+Y F++ +E +
Sbjct: 538 AYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEK 597
Query: 274 VSDKLAEIEENMKELGFVLNRSLYQTKMK---------------AVALGLISFPHGMPTR 318
+ + + + E M++ G+V + S ++ A+ G+I+ P GM R
Sbjct: 598 IREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIR 657
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V K++ +C H+A +F+S I+ RE+VV+D FHHFK+G CSC D +
Sbjct: 658 VTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 705
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 65/145 (44%), Gaps = 8/145 (5%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + YE ++ + DS+++ +L + ++ G +
Sbjct: 205 VSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGC 264
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
++GL + V + LI++ ++C ++ D+ F E++ +SW II+ V +G E
Sbjct: 265 SIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEG 324
Query: 132 LDLF--------KDKQWRYTSMNPT 148
L F K K + ++S+ P
Sbjct: 325 LRFFRQMLMAKIKPKSYSFSSIMPA 349
>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
Length = 627
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 191/408 (46%), Gaps = 55/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ + ++E L + L ++ +++ ++ C + LL +G Q
Sbjct: 222 VSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGL 281
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K VG+ LI++ S+CG I+ A F P KN W ++ A H H EA
Sbjct: 282 CFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEA 341
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
DLF + N TF L A + GLV E + F M++ Y IEP +HY+ MV+
Sbjct: 342 FDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYFALMKK-YEIEPGTQHYASMVD 400
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DPG 248
LGRAG +E L IKG+ P + +W + R+HG+ LA +A DK+ EL G
Sbjct: 401 LLGRAGKLQEALSVIKGM-PTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELGAVSSG 459
Query: 249 MYVG--------------------------------CWIEIQNKIYEFVSNEEL---TSE 273
++V WIE N++++F + + E
Sbjct: 460 LHVMLSNAYAAAGRYEDAAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKE 519
Query: 274 VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
+ KL ++ E M+ G+V + S Y ++ A+A GLIS P G P R
Sbjct: 520 IYQKLEDLGEEMERAGYVADTSFVLREVGSEEKNQTIRYHSERLAIAFGLISIPLGRPIR 579
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +CG H+A +F+S + R ++V+D FH F+DGKCSC D +
Sbjct: 580 IMKNLRVCGDCHNAIKFISKLSGRVIIVRDNNRFHRFEDGKCSCADYW 627
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F + C IL C +VG + K G VG+ L+++ ++CG I +A
Sbjct: 158 FPSATKACAILGRC------DVGKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARN 211
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALK 155
F P +N +SW+ +I G EA+ LFK+ +N T S ++
Sbjct: 212 VFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIR 264
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%)
Query: 49 ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP 108
ICD+L S L G Q A++ K GL P V + LIN S+ + F+ +
Sbjct: 57 ICDLLLSQTRSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESE 116
Query: 109 EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
K+S +W+ +IS+ + P A+ F + F SA KA A++G
Sbjct: 117 RKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILG 169
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 197/406 (48%), Gaps = 54/406 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + + E ++Q + +S +LN+C + L G + A
Sbjct: 700 VSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAE 759
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ KR L VG LI++ ++CG +A F + EKN ++W +I+A HG S+A
Sbjct: 760 IVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKA 819
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L F + + +TF S L A GLV E Y++F SME Y + P+ EHY +V
Sbjct: 820 LGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVG 879
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DPG 248
LGRA F+E I + P +W TLL + R+HG++ LA++A + L+L +P
Sbjct: 880 LLGRARRFQEAETLINQM-PFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPA 938
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEELTSEVSD 276
+Y+ WIE+ N I+EF++ + E ++
Sbjct: 939 VYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAE 998
Query: 277 KLAEIEE---NMKELGFV---------LNRSLYQTKM------KAVALGLISFPHGMPTR 318
AE++ M+E G+ L ++ +T + A+A GLI P G P R
Sbjct: 999 IYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIR 1058
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+ K++ +CG H+A +F+S ++ RE++ +D FH FK+GKCSC+D
Sbjct: 1059 IFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCED 1104
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 70/144 (48%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + YE ++L + +Q D+ + +L+ C NP L +G Q
Sbjct: 498 ISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGR 557
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+T+ GL +GN LIN+ RCG + DA F S ++ +SWT +I + G +A
Sbjct: 558 ITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKA 617
Query: 132 LDLFKDKQWRYTSMNPTTFRSALK 155
++LF Q +TF S LK
Sbjct: 618 IELFWQMQNEGFRPVKSTFSSILK 641
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 58/112 (51%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + ++L++ P +L+ G + + GL S VG L+ + RCG +D A AF
Sbjct: 228 DKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAF 287
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
K T +++ + + +I+A HGH EA + + + ++N TT+ S L A
Sbjct: 288 KGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNA 339
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 63/143 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + +D L +++Q + +L++C N G
Sbjct: 397 ISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHED 456
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G+ S+ + N L+N+ RCG + +A F+ T ++ +SW +I+ HG A
Sbjct: 457 ILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETA 516
Query: 132 LDLFKDKQWRYTSMNPTTFRSAL 154
LF++ Q + TF S L
Sbjct: 517 YKLFQEMQNEELEPDNITFASVL 539
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
ILN+C L G +++++ G S +GN LI++ +RCG + A F + P+++
Sbjct: 336 ILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRD 395
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+SW II+ EA+ L+K Q TF L A A
Sbjct: 396 LISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACA 442
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 114/308 (37%), Gaps = 54/308 (17%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ C + EL ++Q + IL C + L+ G + AY
Sbjct: 599 MSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAY 658
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G VGN LI+ S+ G + DA F P ++ +SW II+ +G A
Sbjct: 659 ILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTA 718
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA----------------------------------- 156
++ Q + N +F S L A
Sbjct: 719 VEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISM 778
Query: 157 YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFI-----KGIVP 211
YA G GEA +F ++ IE + ++ M+ A + G+ + L F +GI P
Sbjct: 779 YAKCGSQGEAQEVFDNI-----IEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKP 833
Query: 212 GKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM-----YVGCWIEIQNKIYEFVS 266
T +LS+ H + L Y + +E + G+ + GC + + + F
Sbjct: 834 DGST----FTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQE 889
Query: 267 NEELTSEV 274
E L +++
Sbjct: 890 AETLINQM 897
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L +C LL + A M + + + N LIN+ +C + DA FK P ++
Sbjct: 33 LLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRD 92
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+SW +IS G +A LF++ Q N T+ S L A
Sbjct: 93 VISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTA 137
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 119/409 (29%), Positives = 194/409 (47%), Gaps = 59/409 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + ++ L R+Q D + +L SC +P L G +
Sbjct: 316 VTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQ 375
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR-VNHGHPSE 130
+ G + + L+++ ++CG +DDA L F E+N ++WT II+ HG E
Sbjct: 376 LVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCRE 435
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL+ F + + + TF S L A +GLV E + F SM Y I+P EHYS V
Sbjct: 436 ALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFV 495
Query: 191 EALGRAGMFEEVLEFIKGI--VPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP- 247
+ LGRAG EE I + +PG P +W LL + RVH D++ + A + +L+LDP
Sbjct: 496 DLLGRAGHLEEAENVILSMPFIPG---PSVWGALLSACRVHSDVERGERAAENVLKLDPD 552
Query: 248 --GMYVG--------------------------------CWIEIQNKIYEFVSNEEL--- 270
G YV WIE+ K++ F ++
Sbjct: 553 DDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPE 612
Query: 271 TSEVSDKLAEIEENMKELGFVLN--------------RSLY-QTKMKAVALGLISFPHGM 315
+ ++ +L ++ E +KE+G+V + R L+ ++ A+ GL+ P GM
Sbjct: 613 SEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSERLAITYGLMKTPPGM 672
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
P R++K++ +CG H+A +F+S ++ RE++ +D FHHF DG CSC D
Sbjct: 673 PIRIVKNLRVCGDCHTATKFISKVVGREIIARDAQRFHHFADGVCSCGD 721
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W +++A + + E ++L D + +LN+ NP LL +G +
Sbjct: 114 VSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHME 173
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + GL P VG L+ + ++CG I A + F PEKN ++WT +I+ G A
Sbjct: 174 IVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVA 233
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
L+L + Q + N TF S L+
Sbjct: 234 LELLETMQQAEVAPNKITFASILQG 258
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 71/158 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W LL+ + ++ ELLE +Q + + IL C P L G + Y
Sbjct: 215 VTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRY 274
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G V N LI + +CG +++A F P ++ ++WT +++ G EA
Sbjct: 275 IIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEA 334
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
++LF+ Q + + TF S L + + + E R+
Sbjct: 335 INLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRI 372
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L C L G + A + K G+ + + N L+++ ++CG + DA F S ++N
Sbjct: 53 LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRN 112
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+SWT +I A V EA ++ + + TF S L A+
Sbjct: 113 IVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFT 159
>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
Length = 920
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 191/409 (46%), Gaps = 54/409 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
EI WN L+ +++ YE + ++ + ++ +++ N + G Q
Sbjct: 513 EITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHG 572
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K G S V N LI++ +CG I+DA + F +N +SW II++ HG E
Sbjct: 573 RAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLE 632
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
ALDLF + N TF L A + +GLV E F SM VY + P +HY+ +V
Sbjct: 633 ALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVV 692
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG + F+ + P +IWRTLL + +VH ++++ + A LLEL+P
Sbjct: 693 DILGRAGQLDRARRFVDEM-PITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDS 751
Query: 248 GMYV--------------------------------GCWIEIQNKIYEFVSNEE---LTS 272
YV WIE++N ++ F + L+
Sbjct: 752 ASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSD 811
Query: 273 EVSDKLAEIEENMKELGFVL-NRSLYQTKMK--------------AVALGLISFPHGMPT 317
++ L+E+ + + ++G+ N +L+ K + AVA GL++ P +P
Sbjct: 812 QIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPL 871
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RVIK++ +C HS +F S + RE+V++D FHHF G CSC D +
Sbjct: 872 RVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/219 (19%), Positives = 89/219 (40%), Gaps = 3/219 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ ++ E + +Q C + D+ + ++C + G Q A
Sbjct: 413 VSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHAR 472
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G + ++ N L+N+ +RCG+ ++A F+ K+ ++W +IS +A
Sbjct: 473 VYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQA 532
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L +F N TF SA+ A A + + + ++ + H +E + ++
Sbjct: 533 LMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEV-ANALIS 591
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
G+ G E+ + + W T++ S HG
Sbjct: 592 LYGKCGSIEDAKMIFSEMSLRN--EVSWNTIITSCSQHG 628
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 7/201 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WNL+L A + D E+ ++Q + ++ IL +C + +G Q +
Sbjct: 312 VLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSL 371
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G S V LI++ S+ +D A + +++ +SWT +I+ V H EA
Sbjct: 372 SIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEA 431
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI--- 188
L FK+ Q + P A A A G+ +A R L + ++ SI
Sbjct: 432 LATFKEMQ--DCGVWPDNIGLASAASACAGI--KAMRQGLQIHARVYVSGYAADISIWNT 487
Query: 189 MVEALGRAGMFEEVLEFIKGI 209
+V R G EE + I
Sbjct: 488 LVNLYARCGRSEEAFSLFREI 508
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 59 PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFI 118
P++L + A RGL + +GN LI++ ++ G + A FK ++ +SW +
Sbjct: 60 PLVLEI----HATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAM 115
Query: 119 ISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+S G EA L+ W P S L A
Sbjct: 116 LSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSA 153
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/148 (19%), Positives = 63/148 (42%), Gaps = 2/148 (1%)
Query: 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILL 62
C ++ + +N L+ + E ++ + +QL D ++ +L +C + L
Sbjct: 202 FCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDL 261
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
G Q +Y+ K G+ L+++ +CG I+ A F N + W ++ A
Sbjct: 262 QKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAY 321
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTF 150
+++ ++F Q + T ++P F
Sbjct: 322 GQISDLAKSFEIF--GQMQATGIHPNKF 347
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 185/378 (48%), Gaps = 54/378 (14%)
Query: 42 GFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD 101
G ++ S L++C + + L +G Q + K G + VGN L+ + +CG I++A+
Sbjct: 405 GRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAN 464
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
FK K+ +SW +I+ HG AL F+ + + T + L A + G
Sbjct: 465 DLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTG 524
Query: 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221
LV + + F +M + Y + P+ +HY+ MV+ LGRAG+ E+ +K + P + IW T
Sbjct: 525 LVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNM-PFEPDAAIWGT 583
Query: 222 LLLSSRVHGDMKLAKYALDKLLELDP---GMYV--------------------------- 251
LL +SRVHG+ +LA+ A DK+ ++P GMYV
Sbjct: 584 LLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGV 643
Query: 252 -----GCWIEIQNKIYEFVSNEELTSEVSDKLAEIEE---NMKELGFVLNRSL------- 296
WIEIQNK + F +E E + A +EE MK+ G+V S+
Sbjct: 644 KKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEE 703
Query: 297 --------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
Y ++ AVA G++ G P RVIK++ +C H+A ++M+ I R ++++D
Sbjct: 704 EEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRD 763
Query: 349 PGSFHHFKDGKCSCKDAY 366
FHHFKDG CSC D +
Sbjct: 764 NNRFHHFKDGSCSCGDYW 781
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I ++CGKI +A F P+++ +SW +I+ GH EAL LF +
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGR 406
Query: 145 MNPTTFRSALKAYA 158
+N ++F SAL A
Sbjct: 407 LNRSSFSSALSTCA 420
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 44/200 (22%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ----- 139
N +++ ++ G +DDA F PEKN +SW ++SA V + EA LFK ++
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALV 220
Query: 140 -WR------------------YTSMN---PTTFRSALKAYALMGLVGEAYRLF--LSMEE 175
W + SMN ++ + + YA G + EA +LF +++
Sbjct: 221 SWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQD 280
Query: 176 VYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD-MKL 234
V+ ++ MV + M EE E + P + + W +L+ V G+ M++
Sbjct: 281 VF-------TWTAMVSGYIQNRMVEEARELFDKM-PER-NEVSWNA-MLAGYVQGERMEM 330
Query: 235 AKYALDKLLELDPGMYVGCW 254
AK +L ++ P V W
Sbjct: 331 AK----ELFDVMPCRNVSTW 346
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 99/259 (38%), Gaps = 34/259 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERI---------QLCCGFI------DSYSICDIL--- 53
+ WN+++K ++ ++ EL E + + G+ D+ S+ D +
Sbjct: 127 VSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK 186
Query: 54 -----NSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP 108
N+ L+ + N + + K NCL+ + KI +A F S
Sbjct: 187 NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMN 246
Query: 109 EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYR 168
++ +SW II+ G EA LF + + T+ + + Y +V EA
Sbjct: 247 VRDVVSWNTIITGYAQSGKIDEARQLFDES----PVQDVFTWTAMVSGYIQNRMVEEARE 302
Query: 169 LFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRV 228
LF M E +E ++ M+ + E E ++P + W T++
Sbjct: 303 LFDKMP-----ERNEVSWNAMLAGYVQGERMEMAKELFD-VMPCRNVS-TWNTMITGYAQ 355
Query: 229 HGDMKLAKYALDKLLELDP 247
G + AK DK+ + DP
Sbjct: 356 CGKISEAKNLFDKMPKRDP 374
>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
Length = 878
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 202/408 (49%), Gaps = 57/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL-LNVGTQAQA 70
+ W+ +L +A D + + ++ + + ++I ++++C +P +++G Q A
Sbjct: 471 VSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHA 530
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K V + L+++ +R G I+ A F+ +++ +SW ++S HG+ +
Sbjct: 531 ISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQK 590
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
ALD+F+ + M+ TF S + A GLV E R F SM Y I P+ EHY+ MV
Sbjct: 591 ALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMV 650
Query: 191 EALGRAGMFEEVLEFIKGI-VPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
+ RAG +E + I+G+ P P++WRTLL + +VH +++L K A +KLL L+P
Sbjct: 651 DLYSRAGKLDEAMSLIEGMSFPAG--PMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFD 708
Query: 248 -GMYV-------------------------------GC-WIEIQNKIYEFVSNEE---LT 271
YV GC WI+I+NK++ F+++++ L+
Sbjct: 709 SATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLS 768
Query: 272 SEVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMP 316
++ KL + +K+ G+ + S ++ A+A GLI+ P G P
Sbjct: 769 EQIYAKLRAMTTKLKQEGYCPDTSFALHEVAEEQKEAMLAMHSERLALAFGLIATPPGAP 828
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+ K++ +CG H+ + +S I +RE+V++D FHHF G CSC D
Sbjct: 829 LHIFKNLRVCGDCHTVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCGD 876
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 112/234 (47%), Gaps = 4/234 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W LL I+ V EL R++ + +S + +L+ + ++++G + A
Sbjct: 171 VTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQ 230
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G S V N L+N+ ++CG +++A + F ++ +SW +++ V +GH EA
Sbjct: 231 SVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEA 290
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS-MEEVYHIEPSEEHYSIMV 190
L LF D + T + +T+ + +K A + +G A +L S ++ +H + + ++
Sbjct: 291 LQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNV--MTALM 348
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+A +AG L+ ++ G + W ++ +GD+ LA ++ E
Sbjct: 349 DAYSKAGQLGNALDIFL-LMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMRE 401
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%)
Query: 82 AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWR 141
VG L+++ + + D F++ P++N ++WT +++ + G S+ ++LF +
Sbjct: 140 GVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAE 199
Query: 142 YTSMNPTTFRSALKAYALMGLVGEAYRL 169
N TF S L A G+V R+
Sbjct: 200 GVWPNSVTFASVLSVVASQGMVDLGRRV 227
>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
Length = 830
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 116/370 (31%), Positives = 176/370 (47%), Gaps = 54/370 (14%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y+ + +C L G Q A++ + G + + GN L+ + ++CG ++DA L F
Sbjct: 435 YTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLV 494
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
P +S+SW +ISA HGH EAL+LF + +F + L A GLV E
Sbjct: 495 MPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEG 554
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226
+ F SM+ + I P E+HY+ +++ LGR+G E + IK +P + P IW +L
Sbjct: 555 FHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIK-TMPFEPTPSIWEAILSGC 613
Query: 227 RVHGDMKLAKYALDKLLELDP---GMYV-------------------------------G 252
R +GDM+ YA D+L + P G Y+ G
Sbjct: 614 RTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPG 673
Query: 253 C-WIEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMK------ 302
C WIE+ +KI+ F+ + EV L I M++LG+V + M+
Sbjct: 674 CSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEY 733
Query: 303 ---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
AV GL+ P G V+K++ +CG H+A FMS + RE+VV+D FH
Sbjct: 734 ILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFH 793
Query: 354 HFKDGKCSCK 363
HFKDG+CSC+
Sbjct: 794 HFKDGECSCE 803
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 85/194 (43%), Gaps = 9/194 (4%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG--TQA 68
++ WN ++ +++ EL R+ +D ++ +L++C N G
Sbjct: 263 DVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHG 322
Query: 69 QAYMTKRGLISHPA--VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q + + A V N L+ + S+ GKI A F + K+ +SW I+S ++ G
Sbjct: 323 QIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSG 382
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
+A+++FK ++ N ++ + Y GL +A +LF M ++P + Y
Sbjct: 383 CLDKAVEVFKVMPYK----NDLSWMVMVSGYVHGGLSEDALKLFNQM-RAEDVKPCDYTY 437
Query: 187 SIMVEALGRAGMFE 200
+ + A G G +
Sbjct: 438 AGAIAACGELGALK 451
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 79/188 (42%), Gaps = 18/188 (9%)
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKID---DADLAFKSTPEKNSLSWTFIISAR 122
TQ + K G + +V N LI + +C + DA P+K+ L+WT ++
Sbjct: 183 TQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGY 242
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS 182
V G + A +F++ ++ + + + Y G+ +A+ LF M V P
Sbjct: 243 VRRGDVNAARSVFEEVDGKFD----VVWNAMISGYVQSGMCADAFELFRRM--VSEKVPL 296
Query: 183 EEH-YSIMVEALGRAGMF-------EEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKL 234
+E ++ ++ A AG F +++ VP P+ + L S+ G + +
Sbjct: 297 DEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSK-GGKIVI 355
Query: 235 AKYALDKL 242
AK D +
Sbjct: 356 AKRIFDTM 363
>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 876
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 112/409 (27%), Positives = 200/409 (48%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL-LNVGTQAQA 70
I W+ +L +A + E ++ ++ + ++ C I+N+C P + G Q A
Sbjct: 469 IAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHA 528
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y K L + V + L+ + ++ G I+ A FK E++ +SW +IS HG +
Sbjct: 529 YAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKK 588
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL++F++ Q R ++ TF + A A GLVG+ F M +HI P+ EHYS M+
Sbjct: 589 ALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMI 648
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ RAGM + ++ I G+ P +WR +L +SRVH +++L K A +K++ L+P
Sbjct: 649 DLYSRAGMLGKAMDIINGM-PFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHS 707
Query: 248 -------GMYVGC-------------------------WIEIQNKIYEFVSNE---ELTS 272
+Y WIE++NK Y F++ + L+
Sbjct: 708 AAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSD 767
Query: 273 EVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPT 317
+ KL+E+ ++++G+ + + + ++ A+A GLI+ +P
Sbjct: 768 HIYSKLSELNTRLRDVGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGLIATLPEIPL 827
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+++K++ +CG HS + +S + +R +VV+D FHHFK G CSC D +
Sbjct: 828 QIVKNLRVCGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN LL + + V EL +Q+ D Y++ ++ + N + +G Q A
Sbjct: 169 VSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHAL 228
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + V N LI++ S+ G + DA + F + K+S+SW +I+ V +G EA
Sbjct: 229 VVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEA 288
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ F + Q TF S +K+ A + +G
Sbjct: 289 FETFNNMQLAGAKPTHATFASVIKSCASLKELG 321
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DSY++ +L+ C VG Q K GL+ H +VGN L+++ ++ G + D F
Sbjct: 101 DSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVF 160
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQW 140
+++ +SW +++ + + F D+ W
Sbjct: 161 DEMGDRDVVSWNSLLTGY--------SWNRFNDQVW 188
Score = 37.7 bits (86), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Query: 12 IPWNLLLKA-CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ I +D E E +QL + ++ SC + L +
Sbjct: 270 VSWNSMIAGHVINGQDLEAF-ETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHC 328
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSL-SWTFIISARVNHGHPS 129
K GL ++ V L+ ++C +IDDA F S+ SWT +IS + +G
Sbjct: 329 KTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTD 388
Query: 130 EALDLF 135
+A++LF
Sbjct: 389 QAVNLF 394
>gi|414876780|tpg|DAA53911.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
Length = 491
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 119/414 (28%), Positives = 198/414 (47%), Gaps = 66/414 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCC-----GFIDSYSICDILNSCLNPI-LLNVG 65
I W L+ C++ +E E +QL C G + C + + + ++ +G
Sbjct: 85 ISWTALITGCVQNGQHE------EALQLFCNMRRAGLSPDRATCSSIIKSSSSLGVIGIG 138
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Q AY+T G +S G+ L+++ ++CG +D+A F PEKNS++W +ISA +
Sbjct: 139 RQLHAYLTTSGHMSSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQY 198
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
G A+ +F +P TF S L A + GL E + F M + P +EH
Sbjct: 199 GQAKNAIRMFDSMLHCGFCPDPVTFLSVLAACSHNGLAEECMKYFDLMRYYNSMSPWKEH 258
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
YS +++ALGRAG F+++ + + + P + P+IW ++L S R++G+ LA A + L +
Sbjct: 259 YSCVIDALGRAGCFDKIQKVLDEM-PFEADPVIWSSILHSCRIYGNQDLATVAAENLFTM 317
Query: 246 DP----------------GMYVGC-------------------WIEIQNKIYEFVSNEE- 269
P G + G W+EI+ KIY F SN+
Sbjct: 318 VPTDATAYVILSNIYAKAGNWEGAARVKKIMRDRGVRKESGNSWVEIKQKIYMFSSNDHT 377
Query: 270 --LTSEVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFP 312
+ E+ ++L + E M + G+ + S Y ++ A+A LI+ P
Sbjct: 378 NPMIDEIKEELERLYEEMDKQGYEPDTSCALHMVDNKQKLESLKYHSERLAIAFALINTP 437
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G P V+K++ C H+A + +S I+ R+++V+D FHHFKDG CSC D +
Sbjct: 438 PGTPITVMKNLSACLDCHAAIKMISKIVNRDIIVRDSRRFHHFKDGFCSCGDYW 491
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 3/182 (1%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
+ +G Q A + GL +GN LI++ S+CG +D A F + +K ++SWT +I+
Sbjct: 34 IKIGRQIHAQLILLGLTLEDFMGNALIDMYSKCGMLDAAKTIFANKSDKTAISWTALITG 93
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
V +G EAL LF + + S + T S +K+ + +G++G +L + H+
Sbjct: 94 CVQNGQHEEALQLFCNMRRAGLSPDRATCSSIIKSSSSLGVIGIGRQLHAYLTTSGHMS- 152
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
S S +++ + G +E + + P K + W ++ + +G K A D
Sbjct: 153 SVFSGSALLDMYAKCGCLDEAIRTFNEM-PEK-NSITWNAVISAYAQYGQAKNAIRMFDS 210
Query: 242 LL 243
+L
Sbjct: 211 ML 212
>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
Length = 936
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 122/408 (29%), Positives = 197/408 (48%), Gaps = 56/408 (13%)
Query: 13 PWNLLLKA-CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
WN+L+ + + E + E +++QL +D + +LN+C + L G +
Sbjct: 531 AWNVLINGYALHGRSREAL-EAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSN 589
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ GL S V N L N+ S+CG +++A F S P ++++SW ++ A HG E
Sbjct: 590 AVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEV 649
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L L + + +N TF S L + + GL+ E + F S+ IE EHY +V+
Sbjct: 650 LKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVD 709
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG--- 248
LGRAG +E ++I + P + + W +LL + RV D+ K A KLLELDPG
Sbjct: 710 LLGRAGKLQEAEKYISKM-PLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSS 768
Query: 249 -------MYV--GCW-----------------------IEIQNKIYEFV---SNEELTSE 273
+Y G W I+++NK++EF ++ +E
Sbjct: 769 ASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAE 828
Query: 274 VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
+ DK+ E+ M+E G+V + + Y ++ A+A GLIS P
Sbjct: 829 IYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPETSSLH 888
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +C H+A +F+S I RE+VV+D FHHF+DG CSCKD +
Sbjct: 889 IFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 936
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 1/182 (0%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ A ++ + +R+Q D + IL++C+NP L G + ++
Sbjct: 229 WNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESIS 288
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ VG LI + +RC +DA F + N ++W+ II+A +HGH EAL
Sbjct: 289 ETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALR 348
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
F+ Q N TF S L + + E R+ L + E + ++ + + +V
Sbjct: 349 YFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITE-HGLDDTTTMRNALVNVY 407
Query: 194 GR 195
GR
Sbjct: 408 GR 409
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 12/151 (7%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ ++ + ++ +L +Q D + IL +C +G+ +
Sbjct: 429 ISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGAC------TIGSHGRTR 482
Query: 72 ------MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ + GL P V L+N+ ++ G++D A++ + E+ +W +I+ H
Sbjct: 483 KLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALH 542
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
G EAL+ ++ Q ++ TF S L A
Sbjct: 543 GRSREALEAYQKLQLEAIPVDKVTFISVLNA 573
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN+++ A K ++ L + L ++ ++ +LNSC + L G A
Sbjct: 24 VSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVLNSCGSFRELRDGILVHAL 83
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
+RG + V L+N+ +CG + DA F+ EKN ++W ++
Sbjct: 84 SLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAML 131
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 4/197 (2%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+LN P L ++ +T+ GL + N L+N+ RC DDA F N
Sbjct: 368 LLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPN 427
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
+SW +I V +AL LF+ Q + + F + L A +G G +L
Sbjct: 428 LISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGA-CTIGSHGRTRKLVH 486
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231
E + S + +V +AG + ++ + ++ W L+ +HG
Sbjct: 487 QCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITA--WNVLINGYALHGR 544
Query: 232 MKLAKYALDKL-LELDP 247
+ A A KL LE P
Sbjct: 545 SREALEAYQKLQLEAIP 561
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 1/146 (0%)
Query: 12 IPWNLLLKA-CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN +L ++ +++ EL R+ L + + ++LNS ++P L G +
Sbjct: 125 VTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHS 184
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ + V L+N ++CG + DA F P ++ +W +ISA E
Sbjct: 185 CVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGE 244
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKA 156
A +F+ Q + TF S L A
Sbjct: 245 AFFIFQRMQQEGERCDRVTFLSILDA 270
>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
Length = 562
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 196/408 (48%), Gaps = 62/408 (15%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W ++ AC + + EL R+ L S ++ +LN+C L VG Q + +
Sbjct: 158 WTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLD 217
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
G S L+++ ++CG ++ + F + +NS+SWT +I+A HG EAL+
Sbjct: 218 ASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALE 277
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LFK+ + TTF L+A + GL+ E+ F SM E Y I P+E HY ++ +
Sbjct: 278 LFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTI 337
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVH------------------------ 229
GRAG ++ E I + P L W+TLL + R+H
Sbjct: 338 GRAGRLQDAEELIHSM-PFHPETLTWKTLLNACRIHSQAERATKVAELLSKLAPEDSMAY 396
Query: 230 -------------GD-MKLAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNEELTSEVS 275
GD M++ K D+ L+ PG +IE++NK++EFV+ +
Sbjct: 397 TLLGNVYAATGRYGDQMRVRKGMTDRGLKKVPGK---SFIEVKNKVHEFVAGDRAHPSRD 453
Query: 276 DKLAEIEE---NMKELGFVLNR----------------SLYQTKMKAVALGLISFPHGMP 316
+ L E+E+ M+E G+V N L+ K+ A+A GLI+ P G P
Sbjct: 454 EILLELEKLGGRMREAGYVPNTKDVLHAVNEEEKEQLIGLHSEKL-AIAFGLIATPPGTP 512
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
++K++ +C H+A + ++ I+ R +VV+D FHHF+DG+CSCKD
Sbjct: 513 LLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRFHHFEDGQCSCKD 560
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLI--SHPAVGNCLININSRCGKIDDADL 102
++ + + N+C L G + A G + S+ + N L+N+ RCG +++A
Sbjct: 86 NAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAILENALLNMYVRCGSLEEARK 145
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
F + ++ SWT +I+A + EAL+LF T S L A A G
Sbjct: 146 VFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSG 204
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
N L+++ ++CG +D+A F E+ +SW+ +I A HG EAL LF
Sbjct: 24 NGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYALHGRGQEALLLF 74
>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g27610-like [Cucumis sativus]
Length = 878
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 120/407 (29%), Positives = 195/407 (47%), Gaps = 59/407 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLN-PILLNVGTQA 68
+ W+ +L + +D E E+ IQL + + Y+ ++N+C + + G Q
Sbjct: 471 VAWSAMLTGLAQTRDSEKAMEVF--IQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQI 528
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A K G + V + L+ + S+ G I+ A+ F E++ +SW +I+ HG
Sbjct: 529 HATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDA 588
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
+AL++F+ Q + ++ TF L A GLV E + F M + YHI+ EHYS
Sbjct: 589 KKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSC 648
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248
MV+ RAGMF++ ++ I G+ P P IWRTLL + RVH +++L K A +KL+ L P
Sbjct: 649 MVDLYSRAGMFDKAMDIINGM-PFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPN 707
Query: 249 MYVG-----------------------------------CWIEIQNKIYEFVSNE---EL 270
VG WIEI+N+I+ F++ +
Sbjct: 708 DAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPF 767
Query: 271 TSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGM 315
+ V KL E+ +K++G+ + + ++ A+A GLI+ P G
Sbjct: 768 SDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGA 827
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
P ++ K++ +CG H+ +S I ER L+V+D FHHFK G CSC
Sbjct: 828 PIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSC 874
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 61/144 (42%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W LL + + V L+ ++Q+ + ++ +L + + ++ G Q A
Sbjct: 171 VSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAM 230
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G V N LI + + + DA+ F S ++S++W +I G E
Sbjct: 231 IVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEG 290
Query: 132 LDLFKDKQWRYTSMNPTTFRSALK 155
+F + ++ T F +ALK
Sbjct: 291 FQMFHRMRLAGVKLSRTVFCTALK 314
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
VG Q K G + +VG L+++ + +D F KN +SWT ++S
Sbjct: 122 VGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYA 181
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+G E + L Q + N TF + L A A
Sbjct: 182 RNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALA 216
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 48/246 (19%), Positives = 93/246 (37%), Gaps = 41/246 (16%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
S++ + WN+++ Y ++ R++L + C L C LN
Sbjct: 265 SMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNF 324
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK-STPEKNSLSWTFIISARV 123
Q + K G + L+ S+C +D+A F + N ++WT +I V
Sbjct: 325 TKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFV 384
Query: 124 NHGHPSEALDLF--------KDKQWRYTSM-----------------------NPTTFRS 152
+ + +A+DLF + + Y+++ P+ +
Sbjct: 385 QNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATA 444
Query: 153 ALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE--HYSIMVEALGRAGMFEEVLEFIKGIV 210
L AY G V E+ R+F S+ P+++ +S M+ L + E+ +E +V
Sbjct: 445 LLDAYVKTGNVVESARVFYSI-------PAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLV 497
Query: 211 PGKLCP 216
+ P
Sbjct: 498 KEGVKP 503
>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
Length = 743
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 189/376 (50%), Gaps = 56/376 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ +++SC N L G Q GLIS V N LI + +CG I+D++ F
Sbjct: 370 DDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLF 429
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++ +SWT ++S G +E +DLF+ + + TF + L A + GLV
Sbjct: 430 DEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVE 489
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ F SM + + I P +HY+ M++ GRAG EE FI + P + W TLL
Sbjct: 490 RGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKM-PFSPDSIGWATLLS 548
Query: 225 SSRVHGDMKLAKYALDKLLELDPGMYVG-------------------------------- 252
S R++G+ ++ K+A + LLELDP G
Sbjct: 549 SCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKE 608
Query: 253 ---CWIEIQNKIYEFVSNEELTSEVSDKL-AEIEE---NMKELGFVLNRSLY------QT 299
WI+ ++K+Y F ++++ +S SD++ AE+E+ M E G+V + S
Sbjct: 609 PGFSWIKYKSKVYIFSADDQ-SSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVEDSE 667
Query: 300 KMK---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
KMK A+A GL+ PHG+P RV+K++ +CG H+A +++S I +RE++V+D
Sbjct: 668 KMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKYISKISQREILVRDAV 727
Query: 351 SFHHFKDGKCSCKDAY 366
FH FKDG CSC D +
Sbjct: 728 RFHLFKDGTCSCGDFW 743
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L++V +Q + +R ++ + N +I R G + D+ F E++S+SWT +I+
Sbjct: 188 LVSVASQVFDEVQERNVVMY----NTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMIT 243
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ +G +EA+DLF+D + +M+ TF S L A
Sbjct: 244 GLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTA 279
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 56/128 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W ++ I+ +L ++ +D Y+ +L +C L G +
Sbjct: 236 ISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTL 295
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G + VG+ L+++ +C + A+ FK KN +SWT ++ +G EA
Sbjct: 296 IIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEA 355
Query: 132 LDLFKDKQ 139
+ +F D Q
Sbjct: 356 VRVFCDMQ 363
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N LIN S+ G I A F P+ NS SW ++SA G S ++F R
Sbjct: 44 NNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKSGDLSTMQEIFSIMPNR--- 100
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSM 173
+ ++ S + Y G V EA + + SM
Sbjct: 101 -DGVSWNSLISGYVCYGSVVEAVKTYNSM 128
>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
Length = 808
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 177/373 (47%), Gaps = 54/373 (14%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y+ + +C L G Q A++ + G + + GN L+ + ++CG ++DA L F
Sbjct: 437 YTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLV 496
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
P +S+SW +ISA HGH EAL+LF + +F + L A GLV E
Sbjct: 497 MPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEG 556
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226
+ F SM+ + I P E+HY+ +++ LGR+G E + IK +P + P IW +L
Sbjct: 557 FHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIK-TMPFEPTPSIWEAILSGC 615
Query: 227 RVHGDMKLAKYALDKLLELDP---GMYV-------------------------------G 252
R +GDM+ YA D+L + P G Y+ G
Sbjct: 616 RTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPG 675
Query: 253 C-WIEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMK------ 302
C WIE+ +KI+ F+ + EV L I M++LG+V + M+
Sbjct: 676 CSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEY 735
Query: 303 ---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
AV GL+ P G V+K++ +CG H+A FMS + RE+VV+D FH
Sbjct: 736 ILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFH 795
Query: 354 HFKDGKCSCKDAY 366
HFKDG+CSC + +
Sbjct: 796 HFKDGECSCGNYW 808
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 85/195 (43%), Gaps = 9/195 (4%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG--TQA 68
++ WN ++ +++ EL R+ +D ++ +L++C N G
Sbjct: 265 DVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHG 324
Query: 69 QAYMTKRGLISHPA--VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q + + A V N L+ + S+ GKI A F + K+ +SW I+S ++ G
Sbjct: 325 QIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSG 384
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
+A+++FK ++ N ++ + Y GL +A +LF M ++P + Y
Sbjct: 385 CLDKAVEVFKVMPYK----NDLSWMVMVSGYVHGGLSEDALKLFNQM-RAEDVKPCDYTY 439
Query: 187 SIMVEALGRAGMFEE 201
+ + A G G +
Sbjct: 440 AGAIAACGELGALKH 454
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 98/237 (41%), Gaps = 23/237 (9%)
Query: 19 KACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSC--LNPILLNVGTQAQAYMTKRG 76
+A + A + H LL L D YS ++++ ++ + TQ + K G
Sbjct: 139 RASLAAPAVSVFHALLGSGSL---RPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSG 195
Query: 77 LISHPAVGNCLININSRCGKID---DADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ +V N LI + +C + DA P+K+ L+WT ++ V G + A
Sbjct: 196 AAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARS 255
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH-YSIMVEA 192
+F++ ++ + + + Y G+ +A+ LF M V P +E ++ ++ A
Sbjct: 256 VFEEVDGKFD----VVWNAMISGYVQSGMCADAFELFRRM--VSEKVPLDEFTFTSVLSA 309
Query: 193 LGRAGMF-------EEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
AG F +++ VP P+ + L S+ G + +AK D +
Sbjct: 310 CANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSK-GGKIVIAKRIFDTM 365
>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1582
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 117/409 (28%), Positives = 192/409 (46%), Gaps = 54/409 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
++ W ++ C++ E ++L D Y+ ++ +C L G Q A
Sbjct: 1175 DVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHA 1234
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K P V L+++ ++CG I+DA FK T SW +I HG+ E
Sbjct: 1235 NTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEE 1294
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL F++ + R + + TF L A + GLV EAY F SM+++Y IEP EHYS +V
Sbjct: 1295 ALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLV 1354
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+AL RAG E + I + P + ++RTLL + RV D + K +KLL L+P
Sbjct: 1355 DALSRAGRIREAEKVISSM-PFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDS 1413
Query: 248 -------GMYVGC-------------------------WIEIQNKIYEFVSNE---ELTS 272
+Y W++++NK++ FV+ + E T
Sbjct: 1414 AAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETD 1473
Query: 273 EVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPT 317
+ +K+ I + ++E G++ + Y ++ A+A GL+ P
Sbjct: 1474 VIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTL 1533
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RVIK++ +CG H+A +++S + ERE+V++D FHHF+ G CSC D +
Sbjct: 1534 RVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/328 (18%), Positives = 136/328 (41%), Gaps = 54/328 (16%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ I + D+ L +Q + ++ + + + L G Q QA +
Sbjct: 1077 WNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVV 1136
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
KRG V + ++++ +CG+++ A F P + ++WT +IS V +G A
Sbjct: 1137 KRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHA-- 1194
Query: 134 LFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRL---------------FLSMEEV 176
LF R + + P TF + +KA +L+ + + ++ S+ ++
Sbjct: 1195 LFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDM 1254
Query: 177 Y----HIEPSE-----------EHYSIMVEALGRAGMFEEVLEFI-----KGIVPGKLCP 216
Y +IE + ++ M+ L + G EE L+F +G+ P ++
Sbjct: 1255 YAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTF 1314
Query: 217 LIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM-YVGCWIEIQNKIYEFVSNEELTSEVS 275
+ + S + + Y++ K+ ++P + + C ++ ++ +
Sbjct: 1315 IGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSR--------------A 1360
Query: 276 DKLAEIEENMKELGFVLNRSLYQTKMKA 303
++ E E+ + + F + S+Y+T + A
Sbjct: 1361 GRIREAEKVISSMPFEASASMYRTLLNA 1388
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%)
Query: 12 IPWNLLLKA-CIKAKDYEMVHELLERIQLCCGFIDS--YSICDILNSCLNPILLNVGTQA 68
+ WN +L A KA+D + LL R F+ + +++ + CL +
Sbjct: 695 VTWNAILSAHADKARDGFHLFRLLRR-----SFVSATRHTLAPVFKMCLLSASPSAAESL 749
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
Y K GL V L+NI ++ G+I +A + F ++ + W ++ A V+ G
Sbjct: 750 HGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLE 809
Query: 129 SEALDLFKDKQWRYTSMNP 147
EAL LF ++ T + P
Sbjct: 810 YEALLLF--SEFNRTGLRP 826
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 3/154 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLN-PILLNVGTQAQA 70
+ WN ++ C + E + + D +++ +L +C + ++ TQ A
Sbjct: 973 VSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHA 1032
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K G++ V LI++ S+ GK+++A+ F + + SW ++ + G +
Sbjct: 1033 CAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPK 1092
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
AL L+ Q N T +A KA GLVG
Sbjct: 1093 ALRLYILMQESGERANQITLANAAKAAG--GLVG 1124
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICD------ILNSCLNPIL 61
SDV I WN L ++ E E + I+S CD +L+
Sbjct: 869 SDV-IAWNKTLSWFLQRG------ETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNC 921
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L +G Q + + GL +VGNCLIN+ + G + A F E + +SW +IS
Sbjct: 922 LELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISG 981
>gi|302785251|ref|XP_002974397.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
gi|300157995|gb|EFJ24619.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
Length = 679
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 116/408 (28%), Positives = 194/408 (47%), Gaps = 56/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN+L+ A ++ ++ EL R+ L +D + +IL +C P+ L G A
Sbjct: 271 ITWNVLISAYVQHCCFKEAMELFRRMLLLGLEMDEVTFINILGACCVPVALEDGRAIHAC 330
Query: 72 MTKRGLIS-HPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ + L S H + N ++N+ +CG + DA+ FKS + + ++W +I+A HGH SE
Sbjct: 331 VREHPLASNHAPLENVILNMYGKCGSLQDAEAMFKSMSQPDVIAWNTMIAAYGQHGHTSE 390
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAY-ALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
AL ++ Q + T+ S + A A GL EA+ F+SM++ + + P HY M
Sbjct: 391 ALRFYELMQEEGVVPDDYTYVSVIDASCANAGLPEEAHAYFVSMQQDHGVRPGGGHYGCM 450
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249
VE+LG+AG + I+ +P + L W + L + R HGDMK K A + +DP
Sbjct: 451 VESLGKAGRLSDAETLIQ-CMPFEPDVLTWTSFLANCRSHGDMKRGKLAAKGAIRIDPEA 509
Query: 250 YVG-----------------------------------CWIEIQNKIYEFVSNEE---LT 271
G I++ +YEF + ++ +
Sbjct: 510 STGYVALARIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPRS 569
Query: 272 SEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMP 316
E+ D+L +++ MK G+ + + ++ A+A G+IS G P
Sbjct: 570 KEIFDELKRLDKEMKSAGYDPDMAHVAHDVEAGQKEPLLFAHSERLAIAFGIISTSPGTP 629
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
R++K++ +CG H+ + S I RE++V+D FHHFK+G CSCKD
Sbjct: 630 LRIMKNLRVCGDCHTMTKLTSKITRREIIVRDSNRFHHFKNGSCSCKD 677
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
++ SC L G + M + GL S V N L+ + +CG +++A L F++TP KN
Sbjct: 40 VIQSCARLGALAEGRRIHQLMRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKN 99
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
SWT +I+ HG EAL LF + + + +F +A+ A + A R
Sbjct: 100 VFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALH 159
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIV 210
++ Y + + + +V + G EE + + +
Sbjct: 160 ALLRRYGFQDAVVATTSLVSMYSKCGSLEESMRTFESMT 198
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 46/170 (27%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
VG L+N+ ++C + DA+ AF E N ++W +ISA V H EA++LF+
Sbjct: 241 VGTTLVNMYAKCSGLHDANAAFVKLQEPNIITWNVLISAYVQHCCFKEAMELFRRMLLLG 300
Query: 143 TSMNPTTFRSALKA------------------------------------YALMGLVGEA 166
M+ TF + L A Y G + +A
Sbjct: 301 LEMDEVTFINILGACCVPVALEDGRAIHACVREHPLASNHAPLENVILNMYGKCGSLQDA 360
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFI-----KGIVP 211
+F SM +P ++ M+ A G+ G E L F +G+VP
Sbjct: 361 EAMFKSMS-----QPDVIAWNTMIAAYGQHGHTSEALRFYELMQEEGVVP 405
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 17/128 (13%)
Query: 14 WNLLLKACIK--------AKDYEMVHELLERIQLCCGFIDSYSICDILNSC-LNPILLNV 64
W +L+ C + A YEM+ + ++ S S +N+C P L
Sbjct: 103 WTILITVCAQHGRSQEALALFYEMLKQGIQP--------HSVSFTAAINACSAGPEFLPA 154
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G A + + G L+++ S+CG ++++ F+S E N++SW +I+A
Sbjct: 155 GRALHALLRRYGFQDAVVATTSLVSMYSKCGSLEESMRTFESMTEPNAVSWNAMIAAFAE 214
Query: 125 HGHPSEAL 132
H EAL
Sbjct: 215 HRRGLEAL 222
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 190/388 (48%), Gaps = 54/388 (13%)
Query: 32 ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91
+L +R+Q D + ++LN+C N L + + + K G +S ++GN L++
Sbjct: 634 KLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTY 693
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR 151
++CG DA L F ++N +SW II HG + L LF+ + + TF
Sbjct: 694 AKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFV 753
Query: 152 SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVP 211
S L A + GL+ E R F SM + I P+ EHY MV+ LGRAG +EV IK +P
Sbjct: 754 SLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIK-TMP 812
Query: 212 GKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMYVG---------------- 252
+ IW LL + R+HG++ +A+ A + L+LDP +YV
Sbjct: 813 FQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAK 872
Query: 253 ----------------CWIEIQNKIYEFVSNEELTSEVSDKLAEIEE---NMKELGFVLN 293
WIE+ +K++ FV+ + E AE+++ MK G+V +
Sbjct: 873 LRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPD 932
Query: 294 -RSL--------------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMST 338
RS+ + ++ A+A GLIS G P R+ K++ +C H+A +F++
Sbjct: 933 TRSVMHDVDEGEKENAVCHHSERLAIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFITK 992
Query: 339 IIERELVVKDPGSFHHFKDGKCSCKDAY 366
I++RE+V +D FHHFKDG CSC D +
Sbjct: 993 IVDREIVARDVNRFHHFKDGVCSCGDYW 1020
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + ++E E+ ++Q + + +LN+C+NP L+ G + +
Sbjct: 412 IAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSR 471
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + +V N LI++ +RCG I DA L F K+ +SWT +I G +EA
Sbjct: 472 VVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEA 531
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
L +F+D Q N T+ S L A
Sbjct: 532 LAVFQDMQQAGLKPNRVTYTSILNA 556
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 67/145 (46%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ ++ E +LL +Q + + +L+SC +P L G +
Sbjct: 212 WNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAM 271
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K L+ V NC++N+ ++CG I +A F K+ +SWT II + GH A +
Sbjct: 272 KARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFE 331
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYA 158
+F+ Q N T+ + L A++
Sbjct: 332 IFQKMQQEGVVPNRITYINVLNAFS 356
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
ILN+C +P L+ G + + + GL + V N L+N+ S CG + DA F +++
Sbjct: 553 ILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRD 612
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+++ +I H EAL LF Q + T+ + L A A G
Sbjct: 613 IVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSG 662
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 61/145 (42%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W +++ E+ E+ +++Q + + ++LN+ P L G ++
Sbjct: 311 VSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSH 370
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G S AVG L+ + ++CG D F+ ++ ++W +I G+ EA
Sbjct: 371 ILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEA 430
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
+++ Q N T+ L A
Sbjct: 431 SEIYHQMQREGMMPNKITYVILLNA 455
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 92/235 (39%), Gaps = 49/235 (20%)
Query: 22 IKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHP 81
I KD M ++++ +Q ++S +L C+ L G + ++ + +
Sbjct: 119 ITGKDRAM--DVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQ 176
Query: 82 AVGNCLININSRCGKIDDADLAFK--STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
N LIN+ +CG I++A + + E+ SW ++ V +G+ EAL L ++ Q
Sbjct: 177 YTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQ 236
Query: 140 W------RYTSM-------NPTTFR-------SALKA---------------YALMGLVG 164
R T+M +P+ A+KA YA G +
Sbjct: 237 QHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIH 296
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK-----GIVPGKL 214
EA +F ME S ++I++ G E E + G+VP ++
Sbjct: 297 EAREVFDKME-----TKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRI 346
>gi|302765332|ref|XP_002966087.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
gi|300166901|gb|EFJ33507.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
Length = 449
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/408 (29%), Positives = 196/408 (48%), Gaps = 62/408 (15%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W ++ AC + + EL R+ L S ++ +LN+C L VG Q + +
Sbjct: 45 WTNMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLD 104
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
G S L+++ ++CG ++ + F + +NS+SWT +I+A HG EAL+
Sbjct: 105 ASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALE 164
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LFK+ + TTF L+A + GL+ E+ F SM E Y I P+E HY ++ +
Sbjct: 165 LFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTI 224
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVH------------------------ 229
GRAG ++ E I + P + W+TLL + R+H
Sbjct: 225 GRAGRLQDAEELIHSM-PFHPETVTWKTLLNACRIHSQAERATKVAELLAKLAPEDSMAY 283
Query: 230 -------------GD-MKLAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNEELTSEVS 275
GD M++ K D+ L+ PG +IE++NK++EFV+ +
Sbjct: 284 TLLGNVYAATERYGDQMRVRKSMTDRGLKKVPG---KSFIEVKNKVHEFVAGDRAHPSRD 340
Query: 276 DKLAEIEE---NMKELGFVLNR----------------SLYQTKMKAVALGLISFPHGMP 316
+ L E+E+ M+E G+V N L+ K+ A+A GLI+ P G P
Sbjct: 341 EILLELEKLGGRMREAGYVPNTKDVLHAVNEEEKEQLIGLHSEKL-AIAFGLIATPPGTP 399
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
++K++ +C H+A + ++ I+ R +VV+D FHHF+DG+CSCKD
Sbjct: 400 LLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRFHHFEDGQCSCKD 447
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 79 SHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDK 138
S+ + N L+N+ RCG +++A F + ++ SWT +I+A + EAL+LF
Sbjct: 9 SNAILENALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHRM 68
Query: 139 QWRYTSMNPTTFRSALKAYALMG 161
T S L A A G
Sbjct: 69 NLEGIPPTSVTLASVLNACACSG 91
>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 878
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/407 (29%), Positives = 195/407 (47%), Gaps = 59/407 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLN-PILLNVGTQA 68
+ W+ +L + +D E E+ IQL + + Y+ ++N+C + + G Q
Sbjct: 471 VAWSAMLTGLAQTRDSEKAMEVF--IQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQI 528
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A K G + V + L+ + S+ G I+ A+ F E++ +SW +I+ HG
Sbjct: 529 HATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDA 588
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
+AL++F+ Q + ++ TF L A GLV E + F M + YHI+ EHYS
Sbjct: 589 KKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSC 648
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248
MV+ RAGMF++ ++ I G+ P P IWRTLL + RVH +++L K A +KL+ L P
Sbjct: 649 MVDLYSRAGMFDKAMDIINGM-PFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPN 707
Query: 249 MYVG-----------------------------------CWIEIQNKIYEFVSNE---EL 270
VG WIEI+N+I+ F++ +
Sbjct: 708 DAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPF 767
Query: 271 TSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGM 315
+ V KL E+ +K++G+ + + ++ A+A GLI+ P G
Sbjct: 768 SDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGA 827
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
P ++ K++ +CG H+ +S I ER L+V+D FHHFK G CSC
Sbjct: 828 PIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSC 874
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 61/144 (42%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W LL + + V L+ ++Q+ + ++ +L + + ++ G Q A
Sbjct: 171 VSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAM 230
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G V N LI + + + DA+ F S ++S++W +I G E
Sbjct: 231 IVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEG 290
Query: 132 LDLFKDKQWRYTSMNPTTFRSALK 155
+F + ++ T F +ALK
Sbjct: 291 FQMFHRMRLAGVKLSRTVFCTALK 314
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
VG Q K G + +VG L+++ + +D F KN +SWT ++S
Sbjct: 122 VGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYA 181
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+G E + L Q + N TF + L A A
Sbjct: 182 RNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALA 216
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 48/246 (19%), Positives = 93/246 (37%), Gaps = 41/246 (16%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
S++ + WN+++ Y ++ R++L + C L C LN
Sbjct: 265 SMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNF 324
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK-STPEKNSLSWTFIISARV 123
Q + K G + L+ S+C +D+A F + N ++WT +I V
Sbjct: 325 TKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFV 384
Query: 124 NHGHPSEALDLF--------KDKQWRYTSM-----------------------NPTTFRS 152
+ + +A+DLF + + Y+++ P+ +
Sbjct: 385 QNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATA 444
Query: 153 ALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE--HYSIMVEALGRAGMFEEVLEFIKGIV 210
L AY G V E+ R+F S+ P+++ +S M+ L + E+ +E +V
Sbjct: 445 LLDAYVKTGNVVESARVFYSI-------PAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLV 497
Query: 211 PGKLCP 216
+ P
Sbjct: 498 KEGVKP 503
>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
[Glycine max]
Length = 1047
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 124/415 (29%), Positives = 201/415 (48%), Gaps = 56/415 (13%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
+ S I WN L+ ++ E L ++ I+S++ +++ N + +G
Sbjct: 635 IFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLG 694
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Q A + K G S V N LI + ++CG IDDA+ F PEKN +SW +++ H
Sbjct: 695 KQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQH 754
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
GH +AL LF+D + N TF L A + +GLV E + F SM EV+ + P EH
Sbjct: 755 GHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEH 814
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
Y+ +V+ LGR+G+ F++ + P + ++ RTLL + VH ++ + ++A LLEL
Sbjct: 815 YACVVDLLGRSGLLSRARRFVEEM-PIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLEL 873
Query: 246 DP----------GMYV-----GC--------------------WIEIQNKIYEFVSNEEL 270
+P MY GC WIE+ N ++ F + ++
Sbjct: 874 EPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQK 933
Query: 271 TSEVSDKLAEIEENMKEL----GFV------LNRS---------LYQTKMKAVALGLISF 311
V DK+ E ++ EL G++ LN + + ++ A+A GL+S
Sbjct: 934 HPNV-DKIYEYLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSL 992
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P V K++ +CG H+ +++S I +R +VV+D FHHFK G CSCKD +
Sbjct: 993 SSSTPIHVFKNLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 61/139 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + + + L + +Q D+ +++C LN G Q A
Sbjct: 540 VSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQ 599
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
G +VGN L+++ +RCGK+ DA AF K+++SW +IS GH EA
Sbjct: 600 ACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEA 659
Query: 132 LDLFKDKQWRYTSMNPTTF 150
L LF +N TF
Sbjct: 660 LSLFSQMSKAGQEINSFTF 678
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 75/147 (51%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN++L A + ++ ++Q+ + ++ IL +C + +++G Q
Sbjct: 439 VLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQ 498
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + V + LI++ ++ GK+D A F+ EK+ +SWT +I+ H +EA
Sbjct: 499 VLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEA 558
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L+LFK+ Q + + F SA+ A A
Sbjct: 559 LNLFKEMQDQGIHSDNIGFASAISACA 585
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 69/152 (45%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
+++ E+ +N L+ + + EL +++ L C D ++ +L++C + L V
Sbjct: 331 AMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLV 390
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Q +Y K G+ S + L+++ +C I A F ST +N + W ++ A
Sbjct: 391 GKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGL 450
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ +E+ +F Q N T+ S L+
Sbjct: 451 LDNLNESFKIFTQMQMEGIEPNQFTYPSILRT 482
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y +L++C VG Q + K+G V N L+ + SR G A+ F +
Sbjct: 272 YIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNA 331
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG--LVG 164
+++ +S+ +IS G+ +AL+LFK + T S L A + +G LVG
Sbjct: 332 MLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVG 391
Query: 165 EAYRLF 170
+ + +
Sbjct: 392 KQFHSY 397
>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
Length = 592
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 186/376 (49%), Gaps = 55/376 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++I +L +C L +G + Y+ K GL+ + V N LI++ ++CG ++DA F
Sbjct: 218 DGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIF 277
Query: 105 KSTP-EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
+ + +SWT +I +G EAL+LF + T L A + GLV
Sbjct: 278 EEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLV 337
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ +R F M+E Y I P EH MV+ LGRAG EE ++I +P + ++WRTLL
Sbjct: 338 DDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYII-TMPLEPNAVVWRTLL 396
Query: 224 LSSRVHGDMKLAKYALDKLLELDPG----------MY--VGCW----------------- 254
S +H ++L K A ++L+ELDPG +Y VG W
Sbjct: 397 GSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRK 456
Query: 255 ------IEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVLNRSL--------- 296
+E++N +YEFV + + ++ + LAEI E ++ G++ S
Sbjct: 457 NPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEE 516
Query: 297 ------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
Y ++ A+A L+ G+P R+IK++ MCG H A +S + +RE++V+D
Sbjct: 517 KETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRS 576
Query: 351 SFHHFKDGKCSCKDAY 366
FHHF+ G CSCKD +
Sbjct: 577 RFHHFQGGACSCKDYW 592
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 5/173 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
P N +L+ + + EL R D+++ ++ +C + L G A
Sbjct: 85 FPLNTVLRIAAGSPRPRVALELHRRR---LALPDTHTYPPLIQACARLLALREGECLHAE 141
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP--EKNSLSWTFIISARVNHGHPS 129
K G ++ V N L+++ CG + A F P +N +SW ++++ +G P+
Sbjct: 142 AAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPN 201
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS 182
E L +F + + + T S L A A G + R+ + +E+V +E S
Sbjct: 202 EVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENS 254
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/406 (28%), Positives = 191/406 (47%), Gaps = 54/406 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + ++ +L R+Q D + L SC +P L G
Sbjct: 365 VTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQ 424
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G + + L+++ ++CG +DDA L F E+N ++WT +I+ HG EA
Sbjct: 425 LVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREA 484
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+ F+ + + + TF S L A +GLV E + F SM Y I+P EHYS V+
Sbjct: 485 LEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVD 544
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG EE E + +P + P +W LL + R+H D++ + A + +L+LDP G
Sbjct: 545 LLGRAGHLEEA-ENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDG 603
Query: 249 MYVG--------------------------------CWIEIQNKIYEFVSNEEL---TSE 273
YV WIE+ K++ F ++ E
Sbjct: 604 AYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKE 663
Query: 274 VSDKLAEIEENMKELG------FVLNRSLYQTKMK---------AVALGLISFPHGMPTR 318
+ +L ++ E +KE G FVL+ + K++ A+ GL+ P G P R
Sbjct: 664 IYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPPGTPIR 723
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
++K++ +CG H+A +F+S ++ RE++ +D FHHF DG CSC D
Sbjct: 724 IVKNLRVCGDCHTASKFISKVVGREIIARDAHRFHHFVDGVCSCGD 769
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W +++A + ++ E ++L D + +LN+ NP LL VG +
Sbjct: 163 VSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHME 222
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL P VG L+ + ++CG I A + F PEKN ++WT +I+ G A
Sbjct: 223 IAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVA 282
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
L+L + Q + N T+ S L+
Sbjct: 283 LELLEKMQQAEVAPNKITYTSILQG 307
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W LL+ + ++ ELLE++Q + + IL C P+ L G + Y
Sbjct: 264 VTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRY 323
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G V N LI + +CG + +A F P ++ ++WT +++ G EA
Sbjct: 324 IIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEA 383
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
+DLF+ Q + + TF SAL +
Sbjct: 384 IDLFRRMQQQGIKPDKMTFTSALTS 408
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L C L G + A + K G+ + + N L+++ ++CG + DA F ++N
Sbjct: 102 LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRN 161
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+SWT +I A V EA ++ + + TF S L A+
Sbjct: 162 IVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFT 208
>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
Length = 1280
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 186/376 (49%), Gaps = 55/376 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++I +L +C L +G + Y+ K GL+ + V N LI++ ++CG ++DA F
Sbjct: 906 DGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIF 965
Query: 105 KSTP-EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
+ + +SWT +I +G EAL+LF + T L A + GLV
Sbjct: 966 EEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLV 1025
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ +R F M+E Y I P EH MV+ LGRAG EE ++I + P + ++WRTLL
Sbjct: 1026 DDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITM-PLEPNAVVWRTLL 1084
Query: 224 LSSRVHGDMKLAKYALDKLLELDPG----------MY--VGCW----------------- 254
S +H ++L K A ++L+ELDPG +Y VG W
Sbjct: 1085 GSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRK 1144
Query: 255 ------IEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVLNRSL--------- 296
+E++N +YEFV + + ++ + LAEI E ++ G++ S
Sbjct: 1145 NPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEE 1204
Query: 297 ------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
Y ++ A+A L+ G+P R+IK++ MCG H A +S + +RE++V+D
Sbjct: 1205 KETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRS 1264
Query: 351 SFHHFKDGKCSCKDAY 366
FHHF+ G CSCKD +
Sbjct: 1265 RFHHFQGGACSCKDYW 1280
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 5/172 (2%)
Query: 13 PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
P N +L+ + + EL R D+++ ++ +C + L G A
Sbjct: 774 PLNTVLRIAAGSPRPRVALELHRR---RLALPDTHTYPPLIQACARLLALREGECLHAEA 830
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP--EKNSLSWTFIISARVNHGHPSE 130
K G ++ V N L+++ CG + A F P +N +SW ++++ +G P+E
Sbjct: 831 AKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNE 890
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS 182
L +F + + + T S L A A G + R+ + +E+V +E S
Sbjct: 891 VLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENS 942
>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 185/376 (49%), Gaps = 55/376 (14%)
Query: 45 DSYSICDILNSCLNPIL-LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+ Y+ I+N+C P + G Q A+ K + V + L+ + S+ G I+ A
Sbjct: 106 NEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEV 165
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
FK E++ +SW IIS HG+ +AL++F++ Q + M+ TF + A GL
Sbjct: 166 FKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLA 225
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E R F M + +HIEP EHYS MV+ GRAGM + +E I + P +WRTLL
Sbjct: 226 NEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEM-PFPASANVWRTLL 284
Query: 224 LSSRVHGDMKLAKYALDKLLELDP----------GMYVGC-------------------- 253
+S +H ++++ K A DKL+ L P MY
Sbjct: 285 AASCIHRNLEVGKLAADKLISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKK 344
Query: 254 -----WIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRS-LYQ------ 298
WIE++NK Y F++ + L++++ KL E+ +K G+ + S ++Q
Sbjct: 345 VAGYSWIEVKNKTYTFLAGDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEH 404
Query: 299 --------TKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
++ A+A GLI P G P +++K++ +CG HS + +S + R++VV+D
Sbjct: 405 KEAILSQHSERLAIAFGLIGTPPGTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSN 464
Query: 351 SFHHFKDGKCSCKDAY 366
FHHFK G CSC D +
Sbjct: 465 RFHHFKGGLCSCGDYW 480
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%)
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ A KR + P+VG L++ + G +D+A F+ EK+ ++W+ +I G
Sbjct: 27 EMHAQAIKRNYVKSPSVGTALLDAYVKRGNVDEASKVFQRIEEKDIVAWSAMICGYAQIG 86
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
A+ +F N TF + A A
Sbjct: 87 DTEGAVRIFVQMAKEKIKPNEYTFSGIINACA 118
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 198/406 (48%), Gaps = 54/406 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WNL++ + D V ELL ++ D ++ IL +C L G A
Sbjct: 462 VSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAE 521
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K GL S V LI + S+CG++ +A F +++++W +++ HG EA
Sbjct: 522 AVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEA 581
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+DLFK S N T + + A + GLV E +F M+E + + P ++HY MV+
Sbjct: 582 VDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVD 641
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG +E EFI+ + P + +W LL + + H +++LA+ A +LEL+P
Sbjct: 642 LLGRAGRLQEAEEFIQSM-PCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYAS 700
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNEELTSEVSD 276
+Y+ G W IEI +I+ FV+ + E+
Sbjct: 701 VYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDA 760
Query: 277 KLAEIE---ENMKELG------FVLN--------RSL-YQTKMKAVALGLISFPHGMPTR 318
AE+E + MKE G FVL+ ++L + ++ A+A GL+ P G P R
Sbjct: 761 IHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHSEKLAIAYGLLKTPSGTPIR 820
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
++K++ +CG H+A +F+S I +RE+V +D FH+F +G CSC D
Sbjct: 821 IMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFNNGTCSCGD 866
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 77/170 (45%), Gaps = 5/170 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W +++A + + EL E++ ++ + +LNSC P LN G + ++
Sbjct: 224 VSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSH 283
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP--- 128
+++RGL + V N LI + +C + +A F +++ +SW+ +I+ G+
Sbjct: 284 ISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKE 343
Query: 129 --SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEV 176
E L + + N TF S L+A G + + ++ + +V
Sbjct: 344 SIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKV 393
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 63/145 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ A + ER+ + + IL +C N +L G +
Sbjct: 123 VTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTI 182
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G+ + AV LI + S+CG+I A F E+N +SWT II A H +EA
Sbjct: 183 VKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEA 242
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
+L++ S N TF S L +
Sbjct: 243 FELYEQMLQAGISPNAVTFVSLLNS 267
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 10/188 (5%)
Query: 12 IPWNLLLKACIKA--KDYEMVHE---LLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
I W+ ++ ++ KD E + E LLER++ F + + IL +C L G
Sbjct: 325 ISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGR 384
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q A ++K G ++ + N+ ++CG I +A+ F KN ++WT +S + G
Sbjct: 385 QIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCG 444
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
S A +F + R N ++ + YA G + + + L SM + +P
Sbjct: 445 DLSSAEKVFSEMPTR----NVVSWNLMIAGYAQNGDIVKVFELLSSM-KAEGFQPDRVTV 499
Query: 187 SIMVEALG 194
++EA G
Sbjct: 500 ITILEACG 507
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
++S + ++ C G + + G+ +GN LIN S+ + A+
Sbjct: 53 LVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQ 112
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
F+ ++ ++W+ +I+A + HP++A D F+ N TF S LKA
Sbjct: 113 VFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKA 166
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 192/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W ++ ++ + E +Q+C D +++ ++ +C L G A+ Y
Sbjct: 259 IAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIY 318
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M + G+ VGN LI++ S+CG I+ A FK ++ +WT II +G EA
Sbjct: 319 MGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEA 378
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+D+F + + TF L A GLV + FLSM E Y+I P+ HY +++
Sbjct: 379 IDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLID 438
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
LGRAG +E L+ I + P K IW TLL S RV+G+ ++ + A ++LLELDP
Sbjct: 439 VLGRAGKLKEALDTIDKM-PMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDPDNST 497
Query: 248 ------GMYV------------------------GC-WIEIQNKIYEFVSNEE---LTSE 273
MY GC IE+ I+EFV+ + + E
Sbjct: 498 AYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAADRSHPMNKE 557
Query: 274 VSDKLAEIEENMKELGFVLN--------------RSLYQTKMK-AVALGLISFPHGMPTR 318
+ KL + +++ G+V + + LY K AV L++ + R
Sbjct: 558 IYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFALLTSESNVIIR 617
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ MC H+A + +S + RE++V+D FHHF+ G CSCKD +
Sbjct: 618 IVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDYW 665
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 22/172 (12%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFID---------SYSICDILNSCLNPILL 62
+ WN L+ ++ +E+ CC F+D + + +L++C L
Sbjct: 127 VMWNALISGHNRSGRFELS---------CCSFVDMVRASAMATAVTYVSVLSACGKGKDL 177
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
+G Q + + G++ V N L+++ + CG +D A + F+ ++ SWT +IS
Sbjct: 178 LLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGL 237
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174
V G A DLF R T + + + Y +G +A F M+
Sbjct: 238 VRSGQVDRARDLFDHMPERDT----IAWTAMIDGYVQVGRFRDALETFRYMQ 285
>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 973
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 110/409 (26%), Positives = 195/409 (47%), Gaps = 54/409 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
++ W ++ C++ + E +++L D Y+ ++ +C L G Q A
Sbjct: 566 DVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHA 625
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K P V L+++ ++CG I+DA F+ ++ W +I HG+ E
Sbjct: 626 NIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEE 685
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL+ F + + R + + TF L A + GL +AY+ F SM++ Y +EP EHYS +V
Sbjct: 686 ALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLV 745
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+AL RAG +E + + + P + ++RTLL + RV GD + + +KL +DP
Sbjct: 746 DALSRAGHIQEAEKVVSSM-PFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDS 804
Query: 248 -------GMYVGC-------------------------WIEIQNKIYEFVSNE---ELTS 272
+Y WI+++NK++ FV+ + E T
Sbjct: 805 AAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETD 864
Query: 273 EVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPT 317
+ +K+ + + +KE G+V + Y ++ A+A GL+ P
Sbjct: 865 LIYNKVEYVMKRIKEEGYVPDTEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTL 924
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RVIK++ +CG H+A +++S + +RE+V++D FHHF+ G CSC D +
Sbjct: 925 RVIKNLRVCGDCHNAIKYISNVFQREIVLRDANRFHHFRSGICSCGDYW 973
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 1/146 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLN-PILLNVGTQAQA 70
I WN ++ C ++ E L + D ++I +L +C + VG Q
Sbjct: 364 ISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHT 423
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K G++ V LI++ S+ GK+++A+L F + + SW ++ + E
Sbjct: 424 CALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYRE 483
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKA 156
AL LF R + TF +A KA
Sbjct: 484 ALRLFSLMHERGEKADQITFANAAKA 509
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 87/243 (35%), Gaps = 49/243 (20%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ + +Y L + D + + + + L G Q A +
Sbjct: 468 WNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVI 527
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K V + ++++ +CG++ A F P + ++WT +IS V +G +A
Sbjct: 528 KMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQA-- 585
Query: 134 LFKDKQWRYTSMNPT--TFRSALKA----------------------------------- 156
LF Q R + P TF + +KA
Sbjct: 586 LFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDM 645
Query: 157 YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFI-----KGIVP 211
YA G + +AY LF M S ++ M+ L + G EE L F +G+ P
Sbjct: 646 YAKCGNIEDAYGLFRRMN-----TRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTP 700
Query: 212 GKL 214
++
Sbjct: 701 DRV 703
>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1067
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/415 (28%), Positives = 207/415 (49%), Gaps = 65/415 (15%)
Query: 11 EIPWNLLLKACIK----AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
E+ WN ++ I K +MV ++++ Q +D ++ +L++C L G
Sbjct: 659 EVSWNSMISGYIHNELLPKAMDMVWFMMQKGQR----LDGFTFATVLSACATVATLERGM 714
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ + L S +G+ L+++ ++CG+ID A F+ P +N SW +IS HG
Sbjct: 715 EVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHG 774
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
H +++LDLF + + + TF L A + GLV E + F SM E+Y + P EH+
Sbjct: 775 HGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHF 834
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS-SRVHG-DMKLAKYALDKLLE 244
S MV+ LGR G ++ +F+ + P K LIWRT+L + R +G + L + A + LLE
Sbjct: 835 SCMVDLLGRVGELNKMEDFLNQM-PVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLE 893
Query: 245 LDP----------GMY------------------------VGC-WIEIQNKIYEFVSNEE 269
++P MY GC W+ +++ ++ FV+ ++
Sbjct: 894 MEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDK 953
Query: 270 LTSE---VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISF 311
E + +KL E+ M+ G++ Y ++ AVA +++
Sbjct: 954 SHPEKDLIYEKLKELNGKMRLAGYIPETRFALYDLEGESKEELLSYHSEKIAVAF-VLTR 1012
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P MP R++K++ +CG HSA +++S I+ER++V++D FHHF++GKCSC D +
Sbjct: 1013 PSKMPIRILKNLRVCGDCHSAFKYISQIVERQIVLRDSNRFHHFENGKCSCGDFW 1067
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 65 GTQAQAYMTKRGLI-SHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G++ A++ + GL+ + A+GN LIN+ ++CG I+DA + F+ K+S++W +I+
Sbjct: 407 GSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLD 466
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFR--SALKAYALMGLVGEAYRL 169
+ EA+ F ++ R T + P+ F SAL + A +G + +L
Sbjct: 467 QNKQFLEAVKTF--QEMRRTELYPSNFTMISALSSCASLGWISVGEQL 512
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G ++ + N LINI +R G + F P +N +SW+ +IS + P+EA +
Sbjct: 101 KNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACE 160
Query: 134 LFKDKQWRYTSMNPTTFRSALKA 156
LF+ N F S ++A
Sbjct: 161 LFRKMVSDGFMPNHYAFGSVIRA 183
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 3/153 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + K + + + ++ + ++++ L+SC + ++VG Q
Sbjct: 456 VTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCE 515
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS-- 129
K GL +V N L+ + CG + + AF + + +SW +I A + PS
Sbjct: 516 GLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALAD-SEPSML 574
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
EA++ F N TF + L A + + L
Sbjct: 575 EAVESFLVMMRAGWDPNRVTFITILAAVSSLSL 607
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 124/439 (28%), Positives = 200/439 (45%), Gaps = 85/439 (19%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERI---------QLCCGFI------------------ 44
+ WN+++ IK D+E ++L R+ + G++
Sbjct: 195 VTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEA 254
Query: 45 ----DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDA 100
+ ++ +L +C + L++G + Y + G + + N LI++ +CG +++A
Sbjct: 255 GVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEA 314
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
F+ E+ +SW+ +I HG EAL LF D N TF L A + M
Sbjct: 315 CKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHM 374
Query: 161 GLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWR 220
GL+ E R F SM Y I P EHY MV+ L RAG+ E EFI + P K ++W
Sbjct: 375 GLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNM-PMKPNGVVWG 433
Query: 221 TLLLSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW-------------- 254
LL + RVH ++++A+ A+ LLELDP G YV G W
Sbjct: 434 ALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQ 493
Query: 255 ---------IEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVLNRSLY----- 297
I + ++EFV+ EE T ++ + E+ E M+ G+V N S+
Sbjct: 494 VKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIE 553
Query: 298 ----------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
++ A+ GL++ P P R++K++ +C HSA + +S I+ RE+VV+
Sbjct: 554 EGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVR 613
Query: 348 DPGSFHHFKDGKCSCKDAY 366
D FH F D CSC+D +
Sbjct: 614 DRNRFHCFNDNSCSCRDYW 632
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 14 WNLLLKACIKAK---DYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
WN LKA + D M+ L + +C D+++ +L +CLN + L+ G
Sbjct: 96 WNSCLKALAEGDSPIDAIMLFYRLRQYDVC---PDTFTCSSVLRACLNLLDLSNGRILHG 152
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K G S+ + N ++++ + CG++ +A L F+ P+++ ++W +I+ + G
Sbjct: 153 VVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEG 212
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175
A DLF R N ++ S + Y G EA LF MEE
Sbjct: 213 AYDLFS----RMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEE 253
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 120/404 (29%), Positives = 195/404 (48%), Gaps = 56/404 (13%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+++ ++ +YE L +Q D ++ +L +C + L +G AY+
Sbjct: 256 WNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIK 315
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K+ + A+G L+++ ++CG I+ A F PEK+ ++WT +I G AL
Sbjct: 316 KQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQ 375
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
F + + + TF L A + G V E F SM + Y I+P+ EHY +V+ L
Sbjct: 376 YFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDIL 435
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMY 250
GRAG E E IK + P + LL + R+HG+++ A+ A +LLE+DP G Y
Sbjct: 436 GRAGRIAEAEELIKSM-PMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTY 494
Query: 251 V-------------------------------GC-WIEIQNKIYEFV---SNEELTSEVS 275
V GC IE+ ++EFV S+ +SE++
Sbjct: 495 VLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEIN 554
Query: 276 DKLAEIEENMKELGFVLNRS----------------LYQTKMKAVALGLISFPHGMPTRV 319
+ L ++ +K G+V ++S L+ K+ A+A GL+S G P RV
Sbjct: 555 EMLEDMISKLKNAGYVPDKSEVLFDMAEEEKETELSLHSEKL-AIAFGLLSTSVGTPIRV 613
Query: 320 IKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCK 363
+K++ +C HSA + +S + RE++V+D FHHFKDG CSC+
Sbjct: 614 VKNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFKDGTCSCR 657
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y+ + SC N + G Q + TK G S N L+N+ S CG + A F
Sbjct: 87 DRYTFPSLFKSCRNS---SEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVF 143
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT 148
+K +SW +I P+EA+ LF D+ + ++ P
Sbjct: 144 DKMEDKTVVSWATMIGVHAQWDQPNEAVRLF-DRMMKSENVKPN 186
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ ++L +C L + + Y+ + G H + L+++ +CG + A F
Sbjct: 186 NEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLF 245
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
EKN SW +I+ V + EAL LF++ Q + + T S L A +G
Sbjct: 246 DKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLG 302
>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 795
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 185/378 (48%), Gaps = 60/378 (15%)
Query: 42 GFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD 101
F + + C +L S L+ G Q + + + G S + GN LI + SRCG ++ A+
Sbjct: 425 AFAGAITACSVLGS------LDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAE 478
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
F + P +S+SW +I+A HGH +A++LF+ + TF + L A G
Sbjct: 479 SVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAG 538
Query: 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221
L+ E F +M Y I P E+HY+ +++ L RAGMF + IK + P + IW
Sbjct: 539 LIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSM-PFEAGAPIWEA 597
Query: 222 LLLSSRVHGDMKLAKYALDKLLELDPG----------MYV-------------------- 251
LL R+HG+M+L A D+LLEL PG MY
Sbjct: 598 LLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGV 657
Query: 252 ----GC-WIEIQNKIYEFVSNEELTSEVS---DKLAEIEENMKELGFVLNRSLYQTKMK- 302
GC W+E++N ++ F+ ++ EV L ++ MK+LG+V + M+
Sbjct: 658 KKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMES 717
Query: 303 --------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
AV G++ P G RV K++ +CG H+A +++S ++ERE+VV+D
Sbjct: 718 EHKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVEREIVVRD 777
Query: 349 PGSFHHFKDGKCSCKDAY 366
FHHFK+G+CSC + +
Sbjct: 778 RKRFHHFKNGECSCGNYW 795
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 78/200 (39%), Gaps = 43/200 (21%)
Query: 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLN---- 58
L L +++ WN ++ ++ YE + R+ D Y+ ++++C +
Sbjct: 240 LDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEK 299
Query: 59 PILLNVGTQAQAYMTKRGL-ISHP---AVGNCLININSR--------------------- 93
+ N G Q Y+ + + SH +V N LI ++
Sbjct: 300 MGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIIS 359
Query: 94 ----------CGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYT 143
+I++A+ F PE+N L+WT +IS +G E L LF Q +
Sbjct: 360 WNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLF--NQMKSE 417
Query: 144 SMNPT--TFRSALKAYALMG 161
+ P F A+ A +++G
Sbjct: 418 GLEPCDYAFAGAITACSVLG 437
>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
Length = 781
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 122/415 (29%), Positives = 204/415 (49%), Gaps = 65/415 (15%)
Query: 11 EIPWNLLLKACIK----AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
E+ WN ++ I K ++V +++R Q +D ++ +L++C L G
Sbjct: 373 EVSWNSMISGYIHNELLCKAMDLVWLMMQRGQR----LDCFTFATVLSACATVATLECGM 428
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ A + L S +G+ L+++ S+CG+ID A F P +N SW +IS HG
Sbjct: 429 EVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHG 488
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
H AL LF + + TF L A + +GLV E + F SM EVY + P EHY
Sbjct: 489 HGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHY 548
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS-SRVHG-DMKLAKYALDKLLE 244
S MV+ LGRAG +++ FI + P K LIWRT+L + R +G +L + A + L
Sbjct: 549 SCMVDLLGRAGELDKIENFINKM-PIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFN 607
Query: 245 LDP----------GMY------------------------VGC-WIEIQNKIYEFVSNEE 269
+DP MY GC W+ +++ ++ FV+ +
Sbjct: 608 MDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDN 667
Query: 270 LTSE---VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISF 311
E + KL E+++ +++ G+V Y ++ AVA +++
Sbjct: 668 SHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEELLSYHSEKLAVAF-VLTR 726
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G+P R++K++ +CG HSA +++S +++R +V++D FHHF+DGKCSC+D +
Sbjct: 727 NSGLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHFEDGKCSCRDYW 781
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 42 GFI-DSYSICDILNSCLNPILLNV-GTQAQAYMTKRGL-ISHPAVGNCLININSRCGKID 98
GF+ + ++ + +C +L G Q Y + GL + AVGN LIN+ ++CG ID
Sbjct: 96 GFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDID 155
Query: 99 DADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR--SALKA 156
A F +K+S+SW +I+ + +A+ + R T + P+ F SAL +
Sbjct: 156 HARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSY--NSMRKTGLMPSNFALISALSS 213
Query: 157 YALMGLV-------GEAYRLFLSME 174
A +G + GE +L L M+
Sbjct: 214 CASLGCILLGQQTHGEGIKLGLDMD 238
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G S + N LIN+ R G A F P++N ++W +IS +G P +A
Sbjct: 28 KHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACG 87
Query: 134 LFKDKQWRYTSMNPTTFRSALKA 156
+ K+ + N F SA++A
Sbjct: 88 VLKEMIFEGFLPNRFAFGSAIRA 110
>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 760
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 117/409 (28%), Positives = 199/409 (48%), Gaps = 56/409 (13%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ W ++ C + KD E + EL +Q+ + +I +L +C N L G
Sbjct: 354 VSWTSIIAGCAQNGKDIEAL-ELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHG 412
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ + L+ + VG+ LI++ ++CG+I+ + + F P KN + W +++ HG E
Sbjct: 413 FAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKE 472
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
+ +F+ + +F S L A +GL E ++ F M E Y I+P EHYS MV
Sbjct: 473 VMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMV 532
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DP 247
LGRAG +E + IK + P + +W LL S R+ ++ LA+ A +KL L +P
Sbjct: 533 NLLGRAGKLQEAYDLIKEM-PFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENP 591
Query: 248 GMYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTS 272
G YV GC WI+++N++Y ++ ++
Sbjct: 592 GTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQID 651
Query: 273 EVSDKLAEIEENMKELG------FVLNRSLYQTKMK---------AVALGLISFPHGMPT 317
++++K+ EI + M++ G F L+ Q + + AV GL++ P G P
Sbjct: 652 QITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPL 711
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+VIK++ +CG H+ +F+S+ RE+ ++D FHHFKDG CSC D +
Sbjct: 712 QVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 103/259 (39%), Gaps = 42/259 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L ++ ++ + ++I D ++ +L S + +LN+G Y
Sbjct: 218 VSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGY 277
Query: 72 MTKRGLISHPAVGNCLININ-------------------------------SRCGKIDDA 100
+ K+GL+ V + +I++ SR G +D A
Sbjct: 278 VIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKA 337
Query: 101 ----DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+L + T E N +SWT II+ +G EAL+LF++ Q N T S L A
Sbjct: 338 LEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPA 397
Query: 157 YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGK--L 214
+ +G R H+ + S +++ + G + + + ++P K +
Sbjct: 398 CGNIAALGHG-RSTHGFAVRVHLLDNVHVGSALIDMYAKCGRI-NLSQIVFNMMPTKNLV 455
Query: 215 CPLIWRTLLLSSRVHGDMK 233
C W +L+ +HG K
Sbjct: 456 C---WNSLMNGFSMHGKAK 471
>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 783
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 128/409 (31%), Positives = 198/409 (48%), Gaps = 60/409 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + E L + + ++ +I IL++C L+ G
Sbjct: 377 VAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHL 436
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ L + V L+++ ++CG I +A F S EKN+++W +I HG+ EA
Sbjct: 437 IKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEA 496
Query: 132 LDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
L L+ + + NP+ TF S L A + GLVGE +F +M Y IEP EHY+ M
Sbjct: 497 LKLYN--EMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACM 554
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
V+ LGR+G E+ LEFIK + P + P +W TLL + +H D +A+ A ++L ELDP
Sbjct: 555 VDILGRSGQLEKALEFIKKM-PVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGS 613
Query: 248 -GMYV-------------------------------GC-WIEIQNKIYEFVSNEELTSEV 274
G YV GC IE+ + FVS + S
Sbjct: 614 VGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHA 673
Query: 275 SDKLAEIEE---NMKELGFV----------------LNRSLYQTKMKAVALGLISFPHGM 315
+D A++E+ M+E+G+ L +++ K+ A+A GLI+ G
Sbjct: 674 TDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVNVHSEKL-AIAFGLITTEPGN 732
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
R+IK++ +C H+A +F+S I ER +VV+D FHHFKDG CSC D
Sbjct: 733 EIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGICSCGD 781
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 7/171 (4%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L++ + K G+I +P V I ++ +ID A F +PEK ++W +IS
Sbjct: 326 LHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISG 385
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV--GEAYRLFLSMEEVYHI 179
+G A+ LFK+ + N T + L A A +G + G+ + E ++
Sbjct: 386 YTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSE---NL 442
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
EP+ + +V+ + G E + + + W T++ +HG
Sbjct: 443 EPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKN--TVTWNTMIFGYGLHG 491
>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 760
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 192/409 (46%), Gaps = 56/409 (13%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ W ++ C + KD E + EL +Q+ + +I +L +C N L G
Sbjct: 354 VSWTSIIAGCAQNGKDIEAL-ELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHG 412
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ + L+ VG+ LI++ ++CG+I + + F P KN + W +++ HG E
Sbjct: 413 FAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKE 472
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
+ +F+ + +F S L A +GL E ++ F M E Y I+P EHYS MV
Sbjct: 473 VMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMV 532
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DP 247
LGRAG +E + IK I P + +W LL S R+ ++ LA+ A KL L +P
Sbjct: 533 NLLGRAGKLQEAYDLIKEI-PFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENP 591
Query: 248 GMYV-------------------------------GC-WIEIQNKIYEFVS---NEELTS 272
G YV GC WI+++NK+Y ++ +
Sbjct: 592 GTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVYTLLACDKSHPQID 651
Query: 273 EVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGMPT 317
++++K+ EI E M++ G N ++ AV GL++ P G P
Sbjct: 652 QITEKMDEISEEMRKSGHRPNLDFALQDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPL 711
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+VIK++ +CG H+ +F+S+ RE+ ++D FHHFKDG CSC D +
Sbjct: 712 QVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 100/262 (38%), Gaps = 48/262 (18%)
Query: 12 IPWNLLLKACIKA---KDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQA 68
+ WN +L ++ K+ ++ + + + C D ++ +L S + LN+G Q
Sbjct: 218 VSWNGILSGFNRSGYHKEAVIMFQKMHHLGFC---PDQVTVSSVLPSVGDSENLNMGRQI 274
Query: 69 QAYMTKRGLIS-------------------------------HPAVGNCLININSRCGKI 97
Y+ K+GL+ V N I SR G +
Sbjct: 275 HGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLV 334
Query: 98 DDADLAF----KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSA 153
D A F + E N +SWT II+ +G EAL+LF++ Q N T S
Sbjct: 335 DKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSM 394
Query: 154 LKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGK 213
L A + +G R H+ S +++ + G ++ + + ++P K
Sbjct: 395 LPACGNIAALGHG-RSTHGFAVRVHLLDDVHVGSALIDMYAKCGRI-KMSQIVFNMMPTK 452
Query: 214 --LCPLIWRTLLLSSRVHGDMK 233
+C W +L+ +HG K
Sbjct: 453 NLVC---WNSLMNGYSMHGKAK 471
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 190/377 (50%), Gaps = 58/377 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S ++ +L +C + L G Y+ +RGL S V + L+ + RCGK+D F
Sbjct: 284 NSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVF 343
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+++ +SW +IS+ HG+ +A+ +F++ S P TF S L A + GLV
Sbjct: 344 DRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVE 403
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIV--PGKLCPLIWRTL 222
E RLF SM + I+P EHY+ MV+ LGRA +E + ++ + PG P +W +L
Sbjct: 404 EGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPG---PKVWGSL 460
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------------------------- 251
L S R+HG+++LA+ A +L L+P G YV
Sbjct: 461 LGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQ 520
Query: 252 ----GCWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS--LYQTKMK 302
CW+E++ K+Y FVS +E L ++ L ++ E+MKE G++ LY+ + +
Sbjct: 521 KLPGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETE 580
Query: 303 -------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
A+A GLI+ G P R+ K++ +C H +F+S +E+E++V+D
Sbjct: 581 EKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDV 640
Query: 350 GSFHHFKDGKCSCKDAY 366
FH FK+G CSC D +
Sbjct: 641 NRFHRFKNGVCSCGDYW 657
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 104/241 (43%), Gaps = 19/241 (7%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCL----NPILLNVGTQAQ 69
WN L +A A E V L ++ D ++ +L +C+ L G +
Sbjct: 146 WNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIH 205
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
A++T+RG SH + L+++ +R G +D A F P +N +SW+ +I+ +G
Sbjct: 206 AHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAF 265
Query: 130 EALDLFKD--KQWRYTSMNPTTFRSALKAYALM-----GLVGEAYRLFLSMEEVYHIEPS 182
EAL F++ + + +S N T S L+A A + G + Y L ++ + +
Sbjct: 266 EALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPV--- 322
Query: 183 EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
S +V GR G + + + W +L+ S VHG + A +++
Sbjct: 323 ---ISALVTMYGRCGKLDVGQRVFDRMHDRDVVS--WNSLISSYGVHGYGRKAIQIFEEM 377
Query: 243 L 243
L
Sbjct: 378 L 378
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 123/409 (30%), Positives = 196/409 (47%), Gaps = 56/409 (13%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ W ++ C + +D E + EL +Q+ +S +I +L +C N L G A
Sbjct: 352 VSWTSMIACCSQNGRDIEAL-ELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHC 410
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ +RG+ + VG+ LI++ ++CG+I + + F P KN + W +I+ HG E
Sbjct: 411 FSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKE 470
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+++F Q + +F L A + GL E F SM Y IE EHY+ MV
Sbjct: 471 AMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMV 530
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DP 247
L RAG E+ I+ + P +W LL S RVH ++ L + A +KL EL +P
Sbjct: 531 TLLSRAGKLEQAYAMIRRM-PVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNP 589
Query: 248 GMYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTS 272
G Y+ GC WIE++NK++ ++ ++ +
Sbjct: 590 GNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMT 649
Query: 273 EVSDKLAEIEENMKELG------FVLNRSLYQTKMK---------AVALGLISFPHGMPT 317
++ +KL ++ MK+LG FVL Q K + AV GL++ P G P
Sbjct: 650 QIIEKLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPL 709
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+VIK++ +CG H +F+S+ RE+ V+D FHHFK+G CSC D +
Sbjct: 710 QVIKNLRICGDCHVVIKFISSFERREIFVRDTNRFHHFKEGACSCGDYW 758
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 1/150 (0%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+ + + +C L Q + G S V + L+++ +C +I DA F
Sbjct: 113 DNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVF 172
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
E + +SW+ +++A G EA LF + N ++ + + GL
Sbjct: 173 DRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYS 232
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALG 194
EA +FL M + EP S ++ A+G
Sbjct: 233 EAVLMFLDM-HLRGFEPDGTTISSVLPAVG 261
>gi|242065278|ref|XP_002453928.1| hypothetical protein SORBIDRAFT_04g021580 [Sorghum bicolor]
gi|241933759|gb|EES06904.1| hypothetical protein SORBIDRAFT_04g021580 [Sorghum bicolor]
Length = 798
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 103/248 (41%), Positives = 140/248 (56%)
Query: 1 LKLCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
LKLC +S+ +I W+ L+++ + + + L IQ C +D ++ IL+SC
Sbjct: 550 LKLCLALSNHDISWDTLVESFSQVDHHVGIVNLFHVIQRCGANLDYHTARLILSSCGKLG 609
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
LL G QA AYMTKRGL S + LI++ S CG + A AF P+K++ SWT I++
Sbjct: 610 LLEEGLQAHAYMTKRGLASTACTNSYLIDMYSSCGSLRHAFDAFNYMPDKDASSWTSIVA 669
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
A V +G P A+ LF Q P F S LKA A GLV EA+R F SM EVY I+
Sbjct: 670 ANVENGCPETAIRLFSQMQKEKCRPTPEAFLSVLKACARTGLVNEAFRFFASMTEVYKIQ 729
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
PSEEHYS M+E L RAGMF+E FI +VP + W L +++ +G+ K K A D
Sbjct: 730 PSEEHYSHMIEVLSRAGMFKEAEHFIDSVVPSESGASAWSLLCAAAKQNGNDKTVKLAGD 789
Query: 241 KLLELDPG 248
+L L G
Sbjct: 790 RLARLPGG 797
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%)
Query: 42 GFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD 101
G +D + + L SC + + L G A + K + V + L+++ ++CG +++++
Sbjct: 390 GKLDQFIVASSLKSCASGLDLVAGRMLHACILKSNMNPDSFVTSSLVDMYAKCGALEESN 449
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+ F T + W+ IS +G A+ LF+ Q + N T+ + L A +G
Sbjct: 450 MLFSRTKNPGTAVWSAAISGNCLNGQYGRAVHLFRRMQSEHVQPNEFTYTAILTACMALG 509
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA-VGNCLININSRCGKIDDADLA 103
D++ L +C L +G Q + K G + V N L+ + S C + A+
Sbjct: 115 DAFVFSVALRACAAVGSLGLGRQLHGAVAKLGYVGADLFVANGLVTMYSSCQSLRCAEKV 174
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F S + +SWT ++SA +G +EAL LF + + + T AL+A + +G V
Sbjct: 175 FGSITSPDLVSWTSMLSAYTENGCDAEALMLFMEMARDGIACDAFTLSVALRAASSLGHV 234
Query: 164 GEAYRLFLSM 173
G ++L M
Sbjct: 235 GLGHQLHCCM 244
>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1064
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 188/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN L+ ++ + E + R+ ++++ + + + G Q A
Sbjct: 658 IAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAV 717
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+TK G S V N LI++ ++CG I DA+ F KN +SW II+A HG SEA
Sbjct: 718 ITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEA 777
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LD F N T L A + +GLV + F SM Y + P EHY +V+
Sbjct: 778 LDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVD 837
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
L RAG+ EFI+ + P K L+WRTLL + VH +M++ ++A LLEL+P
Sbjct: 838 MLTRAGLLSRAKEFIQEM-PIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSA 896
Query: 249 MYV--------------------------------GCWIEIQNKIYEFV---SNEELTSE 273
YV WIE++N I+ F N L E
Sbjct: 897 TYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADE 956
Query: 274 VSDKLAEIEENMKELGFV------LNRSLYQTKMK---------AVALGLISFPHGMPTR 318
+ + ++ + E+G+V LN ++ K A++ GL+S P +P
Sbjct: 957 IHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPIN 1016
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ +C H+ +F+S + RE++V+D FHHF+ G CSCKD +
Sbjct: 1017 VMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + + +++C L G Q A G S N L+ + SRCGKI+++ LAF
Sbjct: 590 DEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAF 649
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ T ++++W ++S G+ EAL +F N TF SA+KA
Sbjct: 650 EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKA 701
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 64/150 (42%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N L+ + E EL +R+ L DS ++ ++ +C L G Q AY
Sbjct: 355 VTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAY 414
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
TK G S+ + L+N+ ++C I+ A F T +N + W ++ A +
Sbjct: 415 TTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNS 474
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+F+ Q N T+ S LK +G
Sbjct: 475 FRIFRQMQIEEIVPNQYTYPSILKTCIRLG 504
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Query: 52 ILNSCLN-PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK 110
+L +C + +V Q A + +GL V N LI++ SR G +D A F K
Sbjct: 192 VLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK 251
Query: 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ SW +IS + +EA+ LF D P F S L A
Sbjct: 252 DHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSA 297
>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
Length = 1024
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 188/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN L+ ++ + E + R+ ++++ + + + G Q A
Sbjct: 618 IAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAV 677
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+TK G S V N LI++ ++CG I DA+ F KN +SW II+A HG SEA
Sbjct: 678 ITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEA 737
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LD F N T L A + +GLV + F SM Y + P EHY +V+
Sbjct: 738 LDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVD 797
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
L RAG+ EFI+ + P K L+WRTLL + VH +M++ ++A LLEL+P
Sbjct: 798 MLTRAGLLSRAKEFIQEM-PIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSA 856
Query: 249 MYV--------------------------------GCWIEIQNKIYEFV---SNEELTSE 273
YV WIE++N I+ F N L E
Sbjct: 857 TYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADE 916
Query: 274 VSDKLAEIEENMKELGFV------LNRSLYQTKMK---------AVALGLISFPHGMPTR 318
+ + ++ + E+G+V LN ++ K A++ GL+S P +P
Sbjct: 917 IHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPIN 976
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ +C H+ +F+S + RE++V+D FHHF+ G CSCKD +
Sbjct: 977 VMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + + +++C L G Q A G S N L+ + SRCGKI+++ LAF
Sbjct: 550 DEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAF 609
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ T ++++W ++S G+ EAL +F N TF SA+KA
Sbjct: 610 EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKA 661
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 64/150 (42%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N L+ + E EL +R+ L DS ++ ++ +C L G Q AY
Sbjct: 315 VTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAY 374
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
TK G S+ + L+N+ ++C I+ A F T +N + W ++ A +
Sbjct: 375 TTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNS 434
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+F+ Q N T+ S LK +G
Sbjct: 435 FRIFRQMQIEEIVPNQYTYPSILKTCIRLG 464
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Query: 52 ILNSCLN-PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK 110
+L +C + +V Q A + +GL V N LI++ SR G +D A F K
Sbjct: 152 VLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK 211
Query: 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ SW +IS + +EA+ LF D P F S L A
Sbjct: 212 DHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSA 257
>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 867
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 112/409 (27%), Positives = 198/409 (48%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILL-NVGTQAQA 70
+ W+ +L + + E +L ++ + ++ ++N+C +P G Q A
Sbjct: 460 MAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHA 519
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y K L + V + L+ + ++ G ID A FK E++ +SW +IS HG +
Sbjct: 520 YAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKK 579
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL++F + Q R ++ TF + A GLV + + F SM +HI P+ +HYS M+
Sbjct: 580 ALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMI 639
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ RAGM E+ + I + P +WRTLL ++RVH +++L + A +KL+ L P
Sbjct: 640 DLYSRAGMLEKAMGIINEM-PFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDS 698
Query: 248 -------GMYVGC-------------------------WIEIQNKIYEFVSNE---ELTS 272
MY WIE++NK Y F++ + L++
Sbjct: 699 AAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSN 758
Query: 273 EVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPT 317
++ KL+E+ +K+ G+ + + ++ A+A GLI+ P +P
Sbjct: 759 QIYSKLSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPEIPI 818
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+++K++ +CG H+ + +S + +R +VV+D FHHFKDG CSC D +
Sbjct: 819 QIVKNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 65/147 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W LL Y V EL ++Q + Y++ ++ + +N ++ +G Q A
Sbjct: 160 VSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAM 219
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G V N LI++ SR G + DA F ++ ++W +I+ V +G E
Sbjct: 220 VVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEV 279
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
++F Q TF S +K+ A
Sbjct: 280 FEIFNKMQLAGVKPTHMTFASVIKSCA 306
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 1/157 (0%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ + N C + +G Q K GL+ H +VG L+++ + ++D F
Sbjct: 92 DESTLSCVFNICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVF 151
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
E+N +SWT +++ +G +LF Q+ N T + + A G+VG
Sbjct: 152 DEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVG 211
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEE 201
++ +M + E + ++ ++ R GM +
Sbjct: 212 IGLQVH-AMVVKHGFEEAIPVFNSLISLYSRLGMLRD 247
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 3/140 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ ++ V E+ ++QL + ++ SC + L + Q
Sbjct: 261 VTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCK 320
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE-KNSLSWTFIISARVNHGHPSE 130
K G + V L+ S+C ++DDA F E KN +SWT +IS + +G +
Sbjct: 321 ALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQ 380
Query: 131 ALDLFKDKQWRYTSMNPTTF 150
A++LF Q R + P F
Sbjct: 381 AVNLF--SQMRREGVKPNHF 398
>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 908
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 183/377 (48%), Gaps = 58/377 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+ + IL++C + L + ++ GL+S VGN L+++ ++CG +DDA F
Sbjct: 535 DATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVF 594
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
E++ SWT +I HG +ALDLF + N +F + L A + GLV
Sbjct: 595 DDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVD 654
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKG--IVPGKLCPLIWRTL 222
E R FLS+ + Y IEP+ EHY+ MV+ LGRAG EE FI I PG P W L
Sbjct: 655 EGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGD-AP--WGAL 711
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP----------GMYVGC------------------- 253
L + +G++++A++A + L+L P +Y
Sbjct: 712 LGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIR 771
Query: 254 ------WIEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGFVLNRSLY------- 297
WIE+ N+I+ FV ++ + E+ KL ++ + +K G+V + L
Sbjct: 772 KEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQE 831
Query: 298 --------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
++ A+ GL+ P+ P RV K++ +C H+A +F+S + RE+V +D
Sbjct: 832 YKEQALCSHSEKLAIVYGLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVARDA 891
Query: 350 GSFHHFKDGKCSCKDAY 366
FHHFKDG CSC D +
Sbjct: 892 KRFHHFKDGVCSCGDYW 908
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 54/110 (49%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
IL +C +P+ L G + A++ + G S V L+N+ +CG IDDA L F E+N
Sbjct: 36 ILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERN 95
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+SWT +I ++G EA F Q N T+ S L A A G
Sbjct: 96 VISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAG 145
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 4/150 (2%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQ 69
I W +++ + E H L+ + GFI +SY+ ILN+ + L +
Sbjct: 97 ISWTVMIGGLAHYGRGQEAFHRFLQMQRE--GFIPNSYTYVSILNANASAGALEWVKEVH 154
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
++ GL VGN L+++ ++ G IDDA + F E++ SWT +I HG
Sbjct: 155 SHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQ 214
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYAL 159
EA LF + N TT+ S L A A+
Sbjct: 215 EAFSLFLQMERGGCLPNLTTYLSILNASAI 244
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%)
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ + K G IS VGN LI++ ++CG IDDA L F +++ +SW +I +G
Sbjct: 255 EVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNG 314
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
EA +F Q + TT+ S L + G
Sbjct: 315 CGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTG 349
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 1/148 (0%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ + K L +++ F D+ + +IL++ + L + +Y
Sbjct: 404 WNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAI 463
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
GL+ VGN L+++ ++CG A F E+N +WT +IS HG EA
Sbjct: 464 DAGLVD-LRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFS 522
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMG 161
LF + TT+ S L A A G
Sbjct: 523 LFLQMLREGIVPDATTYVSILSACASTG 550
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 42 GFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDA 100
GF+ DS + +LN+ ++ + + + GL+S VG+ +++ RCG IDDA
Sbjct: 330 GFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDA 389
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
L F +N +W +I EAL LF + + TTF + L A
Sbjct: 390 QLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA 445
>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 189/377 (50%), Gaps = 57/377 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++I +L++C L +G + YM K GL + N L+++ +RCG++++A F
Sbjct: 88 DGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 147
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP--TTFRSALKAYALMGL 162
+KNS+SWT +I +G EA++LFK + + P TF L A + G+
Sbjct: 148 DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYME-STEGLLPCEITFVGILYACSHCGM 206
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V E + F M E Y IEP EH+ MV+ L RAG ++ E+IK + P + +IWRTL
Sbjct: 207 VKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSM-PMQPNVVIWRTL 265
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW---------------- 254
L + VHGD LA++A ++L+L+P G YV W
Sbjct: 266 LGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVK 325
Query: 255 -------IEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVL------------ 292
+E+ N+++EF+ ++ + + KL E+ ++ G+V
Sbjct: 326 KVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEE 385
Query: 293 ---NRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
N +Y ++ A+A LIS P P V+K++ +C H A + +S + RE+VV+D
Sbjct: 386 EKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDR 445
Query: 350 GSFHHFKDGKCSCKDAY 366
FHHFK+G CSC+D +
Sbjct: 446 SRFHHFKNGSCSCQDYW 462
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 4/188 (2%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
+ +G + + + G S V N L+++ + CG + A F PEK+ ++W +I+
Sbjct: 4 VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 63
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
+G P EAL L+ + + + T S L A A +G + R+ + M +V +
Sbjct: 64 FAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV-GLTR 122
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
+ +++++ R G EE +V + W +L++ V+G K A L K
Sbjct: 123 NLHSSNVLLDLYARCGRVEEAKTLFDEMVDKN--SVSWTSLIVGLAVNGFGKEA-IELFK 179
Query: 242 LLELDPGM 249
+E G+
Sbjct: 180 YMESTEGL 187
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/388 (29%), Positives = 187/388 (48%), Gaps = 54/388 (13%)
Query: 32 ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91
+L +R+Q D + ++LN+C N L + + K G S +VGN L++
Sbjct: 516 KLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTY 575
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR 151
++CG DA + F+ ++N +SW II HG +AL LF+ + + TF
Sbjct: 576 AKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFV 635
Query: 152 SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVP 211
S L A + GL+ E R F SM + + I P+ EHY MV+ LGRAG +E IK +P
Sbjct: 636 SLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIK-TMP 694
Query: 212 GKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD----------------PGMYVGC-- 253
+ IW LL + R+HG++ +A+ A + L+LD GM+
Sbjct: 695 FQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAK 754
Query: 254 -----------------WIEIQNKIYEFVSNEELTSEVSDKLAEIEE---NMKELGFVLN 293
WI++ +K++ FV+ + + AE++ MK G+V +
Sbjct: 755 LRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVPD 814
Query: 294 -RSL--------------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMST 338
RS+ + ++ A+A GLIS P G + K++ +C H+A +F+S
Sbjct: 815 TRSVMHDVDEGEKENAVCHHSERLAIAYGLISTPPGTRIHIFKNLRVCPDCHTATKFISK 874
Query: 339 IIERELVVKDPGSFHHFKDGKCSCKDAY 366
I++RE++ +D FHHFKDG CSC D +
Sbjct: 875 IVDREIIARDVNRFHHFKDGVCSCGDYW 902
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + +E E+ ++Q + + +LN+C+N L+ G + +
Sbjct: 294 IAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSR 353
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G S V N LI++ SRCG I DA L F K+ +SWT +I G +EA
Sbjct: 354 VAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEA 413
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
L ++++ Q N T+ S L A
Sbjct: 414 LTVYQEMQQAGVEPNRVTYTSILNA 438
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 69/145 (47%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ I+ E +LL ++Q D +I L+SC +P L G +
Sbjct: 94 WNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAM 153
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ GL+ V NC++N+ ++CG I++A F +K+ +SWT I + G A +
Sbjct: 154 QAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFE 213
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYA 158
+F+ + N T+ S L A++
Sbjct: 214 IFQKMEQEGVVPNRITYISVLNAFS 238
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
ILN+C +P L G + + + GL + VGN L+N+ S CG + DA F +++
Sbjct: 435 ILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRD 494
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+++ +I H EAL LF Q + T+ + L A A G
Sbjct: 495 IVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSG 544
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/145 (19%), Positives = 58/145 (40%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W + + E E+ ++++ + + +LN+ +P L G +
Sbjct: 193 VSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSR 252
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G S AVG L+ + ++CG D F+ ++ ++W +I G+ EA
Sbjct: 253 ILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEA 312
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
+++ Q N T+ L A
Sbjct: 313 SEVYNQMQREGVMPNKITYVILLNA 337
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 32 ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91
++++ +Q ++S +L C+ L G Q ++ + + N LIN+
Sbjct: 9 DVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMY 68
Query: 92 SRCGKIDDADLAFK--STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTT 149
+CG I++A +K S E+ SW ++ + +G+ +AL L + Q + + TT
Sbjct: 69 IQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTT 128
Query: 150 FRSALKA 156
S L +
Sbjct: 129 IMSFLSS 135
>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
Length = 746
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 171/358 (47%), Gaps = 56/358 (15%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G + A K GL V CLI++ ++CGK+ +A F+ P +++ W II+
Sbjct: 388 LQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAG 447
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
HGH ++AL LF Q + TF S L A + GLV + F M+ VY I P
Sbjct: 448 LGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVP 507
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
+HY+ MV+ LGRAG +E EFI+ + P K +W LL + R+HG++++ K A
Sbjct: 508 IAKHYTCMVDMLGRAGQLDEAFEFIQSM-PIKPDSAVWGALLGACRIHGNVEMGKVASQN 566
Query: 242 LLELDP---GMYV---------GCW-----------------------IEIQNKIYEFVS 266
L ELDP G YV G W +E++ + F S
Sbjct: 567 LFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYS 626
Query: 267 NEELT-----SEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVAL 306
+ E+ L ++ MK G+V + S ++ A+A
Sbjct: 627 GTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAF 686
Query: 307 GLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G+I+ P G P + K++ +CG HSA +++S I ERE++V+D FHHFKDG CSC D
Sbjct: 687 GIINTPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANRFHHFKDGHCSCGD 744
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 79/165 (47%), Gaps = 12/165 (7%)
Query: 12 IPWNLLLKACIK----AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQ 67
+ WN ++ A + A E+ H ++E +C + S+ + C + +
Sbjct: 235 VTWNSIISANEQGGKVAAAVELFHGMMES-GVCPDVLTLVSLASAVAQCGDEL---GAKS 290
Query: 68 AQAYMTKRGL-ISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Y+ +RG + GN ++++ ++ KID A F + P+++ +SW +I+ + +G
Sbjct: 291 VHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNG 350
Query: 127 HPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRL 169
+EA+ ++ D + + P TF S L AY+ +G + + R+
Sbjct: 351 LANEAIRIYNDMH-NHEGLKPIQGTFVSVLPAYSYLGGLQQGMRM 394
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 11/131 (8%)
Query: 11 EIP-WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQ 69
++P WN +L + LL R+ D+ ++ +L P+ + +G +A
Sbjct: 132 DVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVL-----PMCVVLGDRAL 186
Query: 70 A-----YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
A Y K GL V N LI++ + G + +A F ++ ++W IISA
Sbjct: 187 ALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQ 246
Query: 125 HGHPSEALDLF 135
G + A++LF
Sbjct: 247 GGKVAAAVELF 257
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 200/409 (48%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + E L + L D ++I +L++C L +G + Y
Sbjct: 188 VAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVY 247
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M K GL + N L+++ +RCG++++A F +KNS+SWT +I +G EA
Sbjct: 248 MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEA 307
Query: 132 LDLFKDKQWRYTSMN-PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
++LFK+ + + + TF L A + G+V E + F M E Y IEP EH+ MV
Sbjct: 308 IELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMV 367
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ L RAG ++ E+I + P + +IWRTLL + VHGD LA+ A K+L+L+P
Sbjct: 368 DLLARAGQVKKAYEYILKM-PMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHS 426
Query: 248 GMYV---------GCW-----------------------IEIQNKIYEFVSNEELTSE-- 273
G YV W +E+ N+++EF+ ++ +
Sbjct: 427 GDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQND 486
Query: 274 -VSDKLAEIEENMKELGFVL---------------NRSLYQTKMKAVALGLISFPHGMPT 317
+ KL E+ + ++ G+V N +Y ++ A+A LIS P P
Sbjct: 487 MIYAKLKEMTDRLRLEGYVPQISNVYVDVEEEEKENALVYHSEKIAIAFMLISTPERWPI 546
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV+K++ +C H A + +S + RE+VV+D FHHFK+G CSC+D +
Sbjct: 547 RVVKNLKVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 106/242 (43%), Gaps = 14/242 (5%)
Query: 6 LISDVEIP-----WNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLN 58
+ S +E P WN L++ + + L ++ GF+ D+++ +L +
Sbjct: 75 VFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMR-ASGFVEPDTHTYPFLLKAVGK 133
Query: 59 PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFI 118
+ +G + + + G S V N L+++ + CG + A F PEK+ ++W +
Sbjct: 134 MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 193
Query: 119 ISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYH 178
I+ +G P EAL L+ + + + T S L A A +G + R + M +V
Sbjct: 194 INGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKV-G 252
Query: 179 IEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYA 238
+ + +++++ R G EE +V + W +L++ V+G L K A
Sbjct: 253 LTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKN--SVSWTSLIVGLAVNG---LGKEA 307
Query: 239 LD 240
++
Sbjct: 308 IE 309
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 188/377 (49%), Gaps = 57/377 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++I +L++C L +G + YM K GL + N L+++ +RCG++++A F
Sbjct: 221 DGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP--TTFRSALKAYALMGL 162
+KNS+SWT +I +G EA++LFK + + P TF L A + G+
Sbjct: 281 DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYME-STEGLLPCEITFVGILYACSHCGM 339
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V E + F M E Y IEP EH+ MV+ L RAG ++ E+IK + P + +IWRTL
Sbjct: 340 VKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSM-PMQPNVVIWRTL 398
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------------------------- 251
L + VHGD LA++A ++L+L+P G YV
Sbjct: 399 LGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVK 458
Query: 252 ----GCWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVL------------ 292
+E+ N+++EF+ ++ + + KL E+ ++ G+V
Sbjct: 459 KVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEE 518
Query: 293 ---NRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
N +Y ++ A+A LIS P P V+K++ +C H A + +S + RE+VV+D
Sbjct: 519 EKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDR 578
Query: 350 GSFHHFKDGKCSCKDAY 366
FHHFK+G CSC+D +
Sbjct: 579 SRFHHFKNGSCSCQDYW 595
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 110/251 (43%), Gaps = 12/251 (4%)
Query: 6 LISDVEIP-----WNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLN 58
+ S +E P WN L++ + + L +++ G + D+++ ++ +
Sbjct: 75 VFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVS-GLVEPDTHTYPFLIKAVTT 133
Query: 59 PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFI 118
+ +G + + + G S V N L+++ + CG + A F PEK+ ++W +
Sbjct: 134 MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 193
Query: 119 ISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYH 178
I+ +G P EAL L+ + + + T S L A A +G + R+ + M +V
Sbjct: 194 INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV-G 252
Query: 179 IEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYA 238
+ + +++++ R G EE +V + W +L++ V+G K A
Sbjct: 253 LTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKN--SVSWTSLIVGLAVNGFGKEA-IE 309
Query: 239 LDKLLELDPGM 249
L K +E G+
Sbjct: 310 LFKYMESTEGL 320
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 195/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ +A +L +Q + ++ IL+SC L G +
Sbjct: 292 VAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFF 351
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K+ + +G L++ ++CG ++ + F P KN LSWT +I ++G +A
Sbjct: 352 IKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKA 411
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+ F + N TF L A + GLV E LF+SM + IEP EHY MV+
Sbjct: 412 LEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVD 471
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG+ EE +FIK + P + +IWRTLL S +VH ++++ + +L +L+ L+P G
Sbjct: 472 ILGRAGLIEEAFQFIKNM-PIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSG 530
Query: 249 MY---------VGCW-----------------------IEIQNKIYEFVSNEELTSEVSD 276
Y VG W IE+ I+EF + + + S+ +
Sbjct: 531 DYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEE 590
Query: 277 KLAEIEENMKEL---GFVLNRS---------------LYQTKMKAVALGLISFPHGMPTR 318
IE+ MK++ G+V N + + ++ A+A GLI P G R
Sbjct: 591 IYNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIR 650
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +C H+A + +S + RE+VV+D FHHFK+G CSC D +
Sbjct: 651 ITKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 2/149 (1%)
Query: 14 WNLLLKACIKAKDYEMVHELL-ERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN + K+ ++E V +L E ++L F D ++ +L +C L +G Y+
Sbjct: 193 WNSMFAGYTKSGNWEEVVKLFHEMLELDIRF-DEVTLVSVLTACGRLADLELGEWINRYV 251
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
++GL +P + L+++ ++CG++D A F ++ ++W+ +IS EAL
Sbjct: 252 EEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREAL 311
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMG 161
DLF + Q N T S L + A++G
Sbjct: 312 DLFHEMQKANIDPNEITMVSILSSCAVLG 340
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 87/230 (37%), Gaps = 42/230 (18%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ IL C L+ G Q A + K G SH V N LI++ + CG+++ A F
Sbjct: 123 DEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVF 182
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKD--------------------------- 137
E+N +W + + G+ E + LF +
Sbjct: 183 DEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLE 242
Query: 138 -KQW--RYTSM-----NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
+W RY NPT S + YA G V A RLF M+ + +S M
Sbjct: 243 LGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVA-----WSAM 297
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKY 237
+ +A E L+ + + P + ++L S V G ++ K+
Sbjct: 298 ISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKW 347
>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 919
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 194/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN L+ ++ YE ++ ++ + ++ +++ N + G Q A
Sbjct: 513 ITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHAR 572
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G S + N LI++ +CG I+DA + F ++N +SW II+ HG EA
Sbjct: 573 VIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEA 632
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LDLF + + + TF L A + +GLV E F SM + I P +HY+ +V+
Sbjct: 633 LDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVD 692
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG + F++ + P ++WRTLL + +VH ++++ ++A LLEL+P
Sbjct: 693 ILGRAGQLDRAKRFVEEM-PIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSA 751
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEE---LTSE 273
YV WIE++N ++ F + L +
Sbjct: 752 SYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQ 811
Query: 274 VSDKLAEIEENMKELGFVL-NRSLYQTKMK--------------AVALGLISFPHGMPTR 318
+ + L+ + + + ++G+ N L+ K K AVA GL+S P MP R
Sbjct: 812 IYNFLSHLNDRLYKIGYKQENYHLFHEKEKEGKDPTAFVHSEKLAVAFGLMSLPSCMPLR 871
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
VIK++ +C H+ +F S ++ RE+V++D FHHF +G CSC D +
Sbjct: 872 VIKNLRVCNDCHTWMKFTSGVMGREIVLRDVYRFHHFNNGSCSCGDYW 919
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WNL+L A + D ++ R+ + ++ +L +C + + +G Q +
Sbjct: 311 VLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSL 370
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G S V LI++ S+ G +D A EK+ +SWT +I+ V H EA
Sbjct: 371 TIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEA 430
Query: 132 LDLFKDKQ 139
L+ FK+ Q
Sbjct: 431 LETFKEMQ 438
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/220 (19%), Positives = 97/220 (44%), Gaps = 5/220 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ ++ + + E + +Q C + D+ + +++C ++ G+Q A
Sbjct: 412 VSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHAR 471
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G + ++ N L+ + +RCG +A +F++ K ++W +IS G EA
Sbjct: 472 VYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEA 531
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L +F N TF S++ A A + + + ++ + + + +E + ++
Sbjct: 532 LKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEIS-NALIS 590
Query: 192 ALGRAGMFEEV-LEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
G+ G E+ ++F + K + W T++ HG
Sbjct: 591 LYGKCGSIEDAKMDFFEMT---KRNEVSWNTIITCCSQHG 627
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y + IL++C L +G + K+G S VGN LI++ RC AD F
Sbjct: 144 YVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCD 203
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+S+++ +IS GH AL +F + Q S + T S L A + +G
Sbjct: 204 MLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVG 258
Score = 38.1 bits (87), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/162 (19%), Positives = 65/162 (40%)
Query: 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILL 62
C ++ + +N L+ + + + + +QL DS +I +L +C L
Sbjct: 201 FCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDL 260
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
G Q +Y+ K G+ + L+++ + G I++A F S N + W ++ A
Sbjct: 261 RKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAY 320
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+++ D+F N T+ L+ G +G
Sbjct: 321 GQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIG 362
>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 684
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 186/377 (49%), Gaps = 60/377 (15%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
+ I +L++C L +G A K + + VG+ L+++ +CG I++A+ F
Sbjct: 311 FMISSVLSACAELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSE 370
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVG 164
PE+N ++W +I + G AL LF++ + P+ T S L + +G V
Sbjct: 371 LPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVE 430
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLI--WRTL 222
++F SM Y IEP EH++ +V+ LGR+G+ + EFI+ + + P I W L
Sbjct: 431 RGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMA---IQPTISVWGAL 487
Query: 223 LLSSRVHGDMKLAKYALDKLLEL---DPGMYVG--------------------------- 252
L + R+HG +L K A +KL EL D G +V
Sbjct: 488 LGACRMHGKTELGKIAAEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVRKEMKDIGIK 547
Query: 253 -----CWIEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGFVLNRSL-------- 296
WI ++N+I+ F S+ + SE+ L ++ MKE G+V + +L
Sbjct: 548 KNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAMLGKLRGGMKEAGYVPDTNLSLFDLEDE 607
Query: 297 -------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
Y ++ A+A GLI+ P G+P R+ K++ +CG HSA +F+S I+ RE++V+D
Sbjct: 608 EKASEVWYHSEKIALAFGLIALPQGVPIRITKNLRICGDCHSAIKFISRIVGREIIVRDN 667
Query: 350 GSFHHFKDGKCSCKDAY 366
FH FKDG CSCKD +
Sbjct: 668 HRFHRFKDGCCSCKDYW 684
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 19/221 (8%)
Query: 18 LKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGL 77
L A + K++ VH G +S + C LN+C++ + LN+G Q A++ + G
Sbjct: 191 LDAIVAFKEFLCVH----------GEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGY 240
Query: 78 ISHPAVGNCLININSRCGKIDDADLAF-KSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
+V N LI+ +CG I A++ F + KN +SW +++A V + A +F
Sbjct: 241 KEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFL 300
Query: 137 DKQWRYTSMNPTTF--RSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALG 194
+ + PT F S L A A +G + E R ++ +E + S +V+ G
Sbjct: 301 QAR---KEVEPTDFMISSVLSACAELGGL-ELGRSVHALAVKACVEDNIFVGSALVDMYG 356
Query: 195 RAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLA 235
+ G E + + L + W ++ GD+ +A
Sbjct: 357 KCGSIENAEQVFSELPERNL--VTWNAMIGGYAHQGDIDMA 395
>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
Length = 802
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/371 (31%), Positives = 175/371 (47%), Gaps = 54/371 (14%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y+ + +C L G Q ++ + G + GN LI + +RCG + +A L F
Sbjct: 431 YTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLV 490
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
P +S+SW +ISA HGH EAL+LF + +F + L A GLV E
Sbjct: 491 MPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEG 550
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226
+R F SM+ + I P E+HY+ +++ LGRAG E + IK +P + P IW +L
Sbjct: 551 FRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIK-TMPFEPTPSIWEAILSGC 609
Query: 227 RVHGDMKLAKYALDKLLELDP---GMYV---------GC--------------------- 253
R GDM+L +A D+L ++ P G Y+ GC
Sbjct: 610 RTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPG 669
Query: 254 --WIEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMK------ 302
WIE NK++ F+ + EV L + M++LG+V + + M+
Sbjct: 670 CSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYVPDTKVVLHDMEPHQKEH 729
Query: 303 ---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
AV GL++ P G V+K++ +C H+A FMS + RE+VV+D FH
Sbjct: 730 ILFAHSERLAVGFGLLNLPPGATVTVLKNLRICDDCHAAIMFMSKAVGREIVVRDVRRFH 789
Query: 354 HFKDGKCSCKD 364
HFKDG+CSC +
Sbjct: 790 HFKDGECSCGN 800
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 84/195 (43%), Gaps = 9/195 (4%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG--TQA 68
++ WN ++ + + EL R+ L +D ++ +L++C N L G
Sbjct: 259 DVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHG 318
Query: 69 QAYMTKRGLISHPA--VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q + + A V N L+ S+CG I A F + K+ +SW I+S V
Sbjct: 319 QIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESS 378
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
+A+++F++ ++ N ++ + Y G +A +LF M +++P + Y
Sbjct: 379 CLDKAVEVFEEMPYK----NELSWMVMVSGYVHGGFAEDALKLFNKMRS-ENVKPCDYTY 433
Query: 187 SIMVEALGRAGMFEE 201
+ + A G G +
Sbjct: 434 AGAIAACGELGALKH 448
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 98/254 (38%), Gaps = 32/254 (12%)
Query: 45 DSYSICDILNSC--LNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKID---D 99
D YS +L++ L I + Q + K G +V N L+ + +C + D
Sbjct: 156 DDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRD 215
Query: 100 ADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159
A P K+ L+WT ++ V G A +F++ ++ + + + Y
Sbjct: 216 ARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFD----VVWNAMISGYVH 271
Query: 160 MGLVGEAYRLFLSMEEVYHIEPSEEH-YSIMVEALGRAGMFE-------EVLEFIKGIVP 211
G+ EA+ LF M V P +E ++ ++ A G+F +++ VP
Sbjct: 272 SGMAVEAFELFRRM--VLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVP 329
Query: 212 GKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNEELT 271
P+ + S+ G++ +A+ D + D V W I + E
Sbjct: 330 EAALPVNNALVTFYSKC-GNIAVARRIFDNMTLKD----VVSWNTILSGYVE-------- 376
Query: 272 SEVSDKLAEIEENM 285
S DK E+ E M
Sbjct: 377 SSCLDKAVEVFEEM 390
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/406 (28%), Positives = 199/406 (49%), Gaps = 54/406 (13%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W+ ++ A K + + EL ++ C D ++ +L++C + L VG + ++
Sbjct: 171 WSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVE 230
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
G+ +G LI++ ++CG I+++ F S P K+ L+W+ +I NHG +AL
Sbjct: 231 SNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALS 290
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF N TF L + +GLV + + F SM V+ + P +HY MV+ L
Sbjct: 291 LFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLL 350
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMY 250
GR+G EE + I+ + P + +IWR LL + R++ ++++A+ A+ KL LDP G Y
Sbjct: 351 GRSGHIEEAKQLIRDM-PFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHY 409
Query: 251 V---------GCW-----------------------IEIQNKIYEFVSNEE---LTSEVS 275
V W IE QN I+EF+S + + E+
Sbjct: 410 VLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIY 469
Query: 276 DKLAEIEENMKELGF------VLNRSLYQTKMK---------AVALGLISFPHGMPTRVI 320
L E+ + +++ G+ VL Q+K + AVA GL++ P G R+
Sbjct: 470 KMLGEMMDRLRQAGYKPMTGLVLQDIDEQSKERALAEHSEKLAVAFGLLTTPAGSTLRIT 529
Query: 321 KSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
K++ C HSA + ++ + ER+L+++D FHHF +G+CSCKD +
Sbjct: 530 KNLRACEDCHSAIKLIALLYERKLIIRDRNRFHHFSEGRCSCKDYW 575
>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
Length = 1539
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 126/419 (30%), Positives = 208/419 (49%), Gaps = 72/419 (17%)
Query: 11 EIPWNLLLKACIKA----KDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
E+ WN ++ I K ++V ++++ Q +DS++ +L++C + L G
Sbjct: 1130 EVSWNSMISGYIHNELLHKAMDLVWFMMQKGQR----LDSFTFATVLSACASVATLERGM 1185
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ A + + S VG+ L+++ S+CG+ID A F+ P +N SW +IS HG
Sbjct: 1186 EVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHG 1245
Query: 127 HPSEALDLFK----DKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS 182
H +AL LF D Q + L A + +G V E + F SM EVY + P
Sbjct: 1246 HGEKALKLFTRMMLDGQ---PPDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYRLSPR 1302
Query: 183 EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS-SRVHG-DMKLAKYALD 240
EH+S MV+ LGRAG +EV +FI + P K LIWRT+L + R +G + +L + A +
Sbjct: 1303 VEHFSCMVDLLGRAGKLDEVGDFINSM-PMKPNVLIWRTVLGACCRANGRNTELGRRAAE 1361
Query: 241 KLLELDP----------GMY------------------------VGC-WIEIQNKIYEFV 265
LLEL+P MY GC W+ +++ ++ FV
Sbjct: 1362 MLLELEPQNAVNYVLLANMYASGEKWEDVAKARXAMKEAAVKKEAGCSWVTMKDGVHVFV 1421
Query: 266 SNEELTSE---VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALG 307
+ ++L E + DKL E+ M++ G++ Y ++ AVA
Sbjct: 1422 AGDKLHPEKDXIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSEKIAVAF- 1480
Query: 308 LISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+++ +P R++K++ +CG HSA ++S I+ R++V++D FHHF+DGKCSC D +
Sbjct: 1481 VLTRQSALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 1539
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%)
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G + + + N LINI R G + A F +N ++W +IS +G P EA
Sbjct: 572 KYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACA 631
Query: 134 LFKDKQWRYTSMNPTTFRSALKA 156
F+D N F SAL+A
Sbjct: 632 RFRDMVRAGFIPNHYAFGSALRA 654
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 80/162 (49%), Gaps = 5/162 (3%)
Query: 1 LKLCSLISDV-EIPWNLLLKACI--KAKDYEMVHELLERIQLCCGFIDSYSICDILNSCL 57
LK+ SL+ + ++ WN ++ A +A + V LE ++ G + + +IL++
Sbjct: 1016 LKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWG-LSRVTFINILSAVS 1074
Query: 58 NPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE-KNSLSWT 116
+ L V Q A + K L A+GN L++ +CG++++ + F E ++ +SW
Sbjct: 1075 SLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWN 1134
Query: 117 FIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+IS +++ +A+DL + ++ TF + L A A
Sbjct: 1135 SMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACA 1176
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 65 GTQAQAYMTKRGLISHP-AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G + A++ + GL + A+GN L+N+ ++ G I DA F+ EK+S+SW +IS
Sbjct: 878 GREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLD 937
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFR--SALKAYALMGLV 163
+ +A + F + R T P+ F S L + A +G +
Sbjct: 938 QNECSEDAAESF--LRMRRTGSMPSNFTLISTLSSCASLGWI 977
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Query: 36 RIQLCCGFI-DSYSICDILNSCL--NPILLNVGTQAQAYMTKRGLISHPAVGNCLININS 92
R + GFI + Y+ L +C P +G Q ++K S V N LI++
Sbjct: 634 RDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYG 693
Query: 93 RC-GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
C +DA F +NS+SW IIS G A DLF Q
Sbjct: 694 SCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQ 741
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 1/158 (0%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
++ + WN L+ + + E E R++ ++++ L+SC + + +G
Sbjct: 921 MVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLG 980
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN- 124
Q K GL + +V N L+ + + G + F PE + +SW +I A +
Sbjct: 981 EQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDS 1040
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
S+A+ F + ++ TF + L A + + L
Sbjct: 1041 EASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSL 1078
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 192/410 (46%), Gaps = 59/410 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W ++ ++ E L +++ G ++ ++ L+SC L +G Q
Sbjct: 371 ISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGR 430
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + GN L+ + +CG I++A F+ EK+ +SW +I+ HG EA
Sbjct: 431 LVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEA 490
Query: 132 LDLFKDKQWRYTSMNP--TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
L LF+ + ++ P T L A + GLV + F SM + Y I + +HY+ M
Sbjct: 491 LALFESMK---MTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCM 547
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
++ LGRAG +E L +K + P W LL +SR+HGD +L + A +K+ E++P
Sbjct: 548 IDLLGRAGRLDEALNLMKSM-PFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDN 606
Query: 248 -GMYV--------------------------------GCWIEIQNKIYEFVSNEELTSEV 274
GMYV W+EIQNK + F + E
Sbjct: 607 SGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEA 666
Query: 275 SDKLAEIEE---NMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMP 316
A +EE +K+ GFV + L Y ++ AVA G++S P G P
Sbjct: 667 ERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRP 726
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RVIK++ +C H+A + +S I +R+++V+D FHHF +G CSC D +
Sbjct: 727 IRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 11/162 (6%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
NCL+ R ++DDA F P ++ +SW +I+ +G SEA LF++ R
Sbjct: 219 NCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR--- 275
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
+ + + + + G++ EA R+F M E +E ++ M+ ++ E+ E
Sbjct: 276 -DVFAWTAMVSGFVQNGMLDEATRIFEEMP-----EKNEVSWNAMIAGYVQSQQIEKARE 329
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+ P + W T++ G++ AK D++ + D
Sbjct: 330 LFDQM-PSRNTS-SWNTMVTGYAQCGNIDQAKILFDEMPQRD 369
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 3/146 (2%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N ++ ++CG ID A + F P+++ +SW +IS G EAL LF +
Sbjct: 343 NTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGI 402
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
+N + AL + A + + +L + + + + ++ G+ G EE +
Sbjct: 403 LNRSALACALSSCAEIAALELGKQLHGRLVKA-GFQTGYIAGNALLAMYGKCGSIEEAFD 461
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHG 230
+ I + W T++ HG
Sbjct: 462 VFEDITEKDIVS--WNTMIAGYARHG 485
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M +R +++ A+ + ++ N K D A F+ P+++ +SW ++S V +G+ S A
Sbjct: 86 MRRRSTVTYNAMISGYLSNN----KFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAA 141
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSM 173
LF + + ++ + L +A G V EA ++F M
Sbjct: 142 RALFN----QMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM 179
>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/377 (28%), Positives = 184/377 (48%), Gaps = 58/377 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ +LN+C N +G + YMT+ G + L+++ S+CG + A+ F
Sbjct: 303 NEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVF 362
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
K TP+ + SWT +I+ +G P EA+ F+ T + TF L A A GLV
Sbjct: 363 KETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVD 422
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK--GIVPGKLCPLIWRTL 222
+ F S++E Y + + +HY+ +++ L R+G F+E I + P K +W +L
Sbjct: 423 KGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDK---FLWASL 479
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP----------------GMYVGC------------- 253
L R+HG++KLA+ A + L E++P GM+
Sbjct: 480 LGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVV 539
Query: 254 ------WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL-------- 296
WI I+ ++ F+ ++ + E+++ L ++ + MKE GFV + +
Sbjct: 540 KKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDTNFVLHDVEDE 599
Query: 297 -------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
Y ++ AVA G+IS P G P +V K++ C H+A +F+S I R+++V+D
Sbjct: 600 QKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCHTAIKFISKITNRKIIVRDS 659
Query: 350 GSFHHFKDGKCSCKDAY 366
FH F+DG CSC+D +
Sbjct: 660 NRFHFFEDGHCSCRDYW 676
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L +G + Y+ + GL S V + L ++ +CG I++A F +++ ++WT +I
Sbjct: 219 LRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDR 278
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
G E DLF D N TF L A A
Sbjct: 279 YFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACA 315
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 24/133 (18%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI----------DSYSICDILNSCLNPILLN 63
++ L+++CIK++ + ++ + I+L GF+ + Y+ CD L
Sbjct: 73 YSTLIQSCIKSRLLQQGKKVHQHIKLS-GFVPGLFILNRLLEMYAKCDSLMD-------- 123
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
+ M +R L S N LI+ ++ G + +A F PE+++ SWT +IS V
Sbjct: 124 -SQKLFDEMPERDLCS----WNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYV 178
Query: 124 NHGHPSEALDLFK 136
H P+EAL+LF+
Sbjct: 179 RHDRPNEALELFR 191
>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 120/381 (31%), Positives = 183/381 (48%), Gaps = 59/381 (15%)
Query: 44 IDSYSICDI-----LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKID 98
+D + CD L +C L G Q A + G S +VGN +I++ ++CG ++
Sbjct: 418 LDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVE 477
Query: 99 DADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
A+ F + P + +SW +I+A HGH +A++LF + TF + L A +
Sbjct: 478 AAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACS 537
Query: 159 LMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLI 218
GLV + F SM E Y I P E+HY+ MV+ RAGMF I + P K +
Sbjct: 538 HAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSM-PSKPGAPV 596
Query: 219 WRTLLLSSRVHGDMKLAKYALDKLLELDP---GMYV------------------------ 251
W LL R+HG+M L A ++L +L P G YV
Sbjct: 597 WEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRD 656
Query: 252 -------GC-WIEIQNKIYEFVSNEELTSEVSDKLAEIEE---NMKELG------FVLNR 294
C WIE++NK++ F+ ++++ EV +E+ MK+LG FVL+
Sbjct: 657 QAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHD 716
Query: 295 SLYQTKMK---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELV 345
Y+ K AV G++ P G RV K++ +CG H+A +FMS + RE++
Sbjct: 717 MEYEQKEHALSTHSEKLAVGFGIMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREII 776
Query: 346 VKDPGSFHHFKDGKCSCKDAY 366
V+D FHHFK+G CSC+D +
Sbjct: 777 VRDRKRFHHFKNGDCSCRDYW 797
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 9/200 (4%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
+++ ++ WN ++ + ++ L +++ D + I+++C N +
Sbjct: 248 AMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQM 307
Query: 65 GTQAQAYMTKRGLISHPA----VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
G Q AY+ K L + + V N LI + + K+D+A F + P +N ++W I+S
Sbjct: 308 GKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILS 367
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
VN G EA F++ + N T + A G E +LF M + E
Sbjct: 368 GYVNAGRMEEAKSFFEEMPVK----NLLTLTVMISGLAQNGFGDEGLKLFKQM-RLDGFE 422
Query: 181 PSEEHYSIMVEALGRAGMFE 200
P + ++ + A G E
Sbjct: 423 PCDFAFAGALTACSVLGALE 442
>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
Length = 802
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 120/407 (29%), Positives = 188/407 (46%), Gaps = 54/407 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
E+ W +++ + E +L R++ Y+ +++C L G Q
Sbjct: 395 ELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHG 454
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
++ + G + GN LI + +RCG + +A+L F P +S+SW +ISA HGH E
Sbjct: 455 HLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGRE 514
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL+LF + +F + L A GLV E ++ F SM+ + I P E+HY+ ++
Sbjct: 515 ALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLI 574
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG E + IK +P + P IW +L R GDM+L +A D+L ++ P
Sbjct: 575 DLLGRAGRIGEARDLIK-TMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHD 633
Query: 248 GMYV-------------------------------GC-WIEIQNKIYEFVSNEELTSE-- 273
G Y+ GC WIE NK++ FV + E
Sbjct: 634 GTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAH 693
Query: 274 -VSDKLAEIEENMKELGFVLNRSLYQTKMK---------------AVALGLISFPHGMPT 317
V L + M++LG+V + + M+ AV GL+ P G
Sbjct: 694 KVYKFLEMVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLKLPPGATV 753
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
V+K++ +C H+ FMS + RE+VV+D FHHFKDG+CSC +
Sbjct: 754 TVLKNLRICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECSCGN 800
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 83/191 (43%), Gaps = 9/191 (4%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
++ WN ++ + + EL R+ L +D ++ +L++C N G
Sbjct: 259 DVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHG 318
Query: 71 YMTK--RGLISHPA--VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+T+ + A V N L+ + S+CG I A F + K+ +SW I+S V
Sbjct: 319 QITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESS 378
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
+A+++F++ ++ N ++ + Y G +A +LF M ++P + Y
Sbjct: 379 CLDKAVEVFEEMPYK----NELSWMVMVSGYVHGGFSEDALKLFNRM-RAEDVKPCDYTY 433
Query: 187 SIMVEALGRAG 197
+ + A G G
Sbjct: 434 AGAISACGELG 444
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 103/254 (40%), Gaps = 32/254 (12%)
Query: 45 DSYSICDILNSC--LNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKID---D 99
D YS +L++ L I + Q Q + K G +V N L+ + +C ++ D
Sbjct: 156 DDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRD 215
Query: 100 ADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159
A P+K++L+WT ++ V G A +F++ ++ + + + Y
Sbjct: 216 ARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFD----VVWNAMISGYVH 271
Query: 160 MGLVGEAYRLFLSMEEVYHIEPSEEH-YSIMVEALGRAGMFE-------EVLEFIKGIVP 211
G+V EA+ LF M V P +E ++ ++ A AG F ++ VP
Sbjct: 272 SGMVVEAFELFRRM--VLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVP 329
Query: 212 GKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNEELT 271
P+ + L S+ G++ +A+ D + D V W I + E
Sbjct: 330 EAALPVNNALVTLYSKC-GNIAVARRIFDNMKSKD----VVSWNTILSGYVE-------- 376
Query: 272 SEVSDKLAEIEENM 285
S DK E+ E M
Sbjct: 377 SSCLDKAVEVFEEM 390
>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/399 (30%), Positives = 190/399 (47%), Gaps = 57/399 (14%)
Query: 21 CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISH 80
C KAK+ + +E + C + ++ +L +C + L++G + Y + G +
Sbjct: 205 CGKAKEAIHLFAKMEEAGVKC---NEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRN 261
Query: 81 PAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQW 140
+ N LI++ +CG +++A F+ E+ +SW+ +I HG EAL LF D
Sbjct: 262 VRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQ 321
Query: 141 RYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
N TF L A + MGL+ E R F SM Y I P EHY MV+ L RAG+
Sbjct: 322 VGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLH 381
Query: 201 EVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMYV------ 251
E EFI + P K ++W LL + RVH ++++A+ A+ LLELDP G YV
Sbjct: 382 EAHEFILNM-PMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIY 440
Query: 252 ---GCW-----------------------IEIQNKIYEFVSNEEL---TSEVSDKLAEIE 282
G W I + ++EFV+ EE T ++ + E+
Sbjct: 441 AEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELL 500
Query: 283 ENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGMPTRVIKSVGMCG 327
E M+ G+V N S+ ++ A+ GL++ P P R++K++ +C
Sbjct: 501 EEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICE 560
Query: 328 YSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
HSA + +S I+ RE+VV+D FH F D CSC+D +
Sbjct: 561 DCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 599
>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
Length = 920
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/409 (28%), Positives = 190/409 (46%), Gaps = 54/409 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
EI WN L+ +++ Y+ + ++ + ++ +++ N + G Q
Sbjct: 513 EITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHG 572
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K G S V N LI++ +CG I+DA + F +N +SW II++ HG E
Sbjct: 573 RAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLE 632
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
ALDLF + N TF L A + +GLV E F SM VY + P +HY+ +V
Sbjct: 633 ALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVV 692
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG + F+ + P +IWRTLL + +VH ++++ + A LLEL+P
Sbjct: 693 DILGRAGQLDRARRFVDEM-PITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDS 751
Query: 248 GMYV--------------------------------GCWIEIQNKIYEFVSNEE---LTS 272
YV WIE++N ++ F + L+
Sbjct: 752 ASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSD 811
Query: 273 EVSDKLAEIEENMKELGFVL-NRSLYQTKMK--------------AVALGLISFPHGMPT 317
++ L+E+ + + ++G+ N +L+ K + AVA GL++ P +P
Sbjct: 812 QIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPL 871
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RVIK++ +C HS + S + RE+V++D FHHF G CSC D +
Sbjct: 872 RVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 7/201 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WNL+L A + D E+ ++Q + ++ IL +C + +G Q +
Sbjct: 312 VLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSL 371
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G S V LI++ S+ G +D A + +++ +SWT +I+ V H EA
Sbjct: 372 SIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEA 431
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI--- 188
L FK+ Q + P A A A G+ +A R L + ++ SI
Sbjct: 432 LATFKEMQ--DCGVWPDNIGLASAASACAGI--KAMRQGLQIHARVYVSGYAADISIWNT 487
Query: 189 MVEALGRAGMFEEVLEFIKGI 209
+V R G EE + I
Sbjct: 488 LVNLYARCGRSEEAFSLFREI 508
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/219 (19%), Positives = 89/219 (40%), Gaps = 3/219 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ ++ E + +Q C + D+ + ++C + G Q A
Sbjct: 413 VSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHAR 472
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G + ++ N L+N+ +RCG+ ++A F+ K+ ++W +IS +A
Sbjct: 473 VYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQA 532
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L +F N TF SA+ A A + + + ++ + H +E + ++
Sbjct: 533 LMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEV-ANALIS 591
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
G+ G E+ + + W T++ S HG
Sbjct: 592 LYGKCGSIEDAKMIFSEMSLRN--EVSWNTIITSCSQHG 628
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 59 PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFI 118
P++L + A RGL + +GN LI++ ++ G + A FK ++ +SW +
Sbjct: 60 PLVLEI----HATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAM 115
Query: 119 ISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+S G EA L+ W P S L A
Sbjct: 116 LSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSA 153
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/148 (19%), Positives = 63/148 (42%), Gaps = 2/148 (1%)
Query: 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILL 62
C ++ + +N L+ + E ++ + +QL D ++ +L +C + L
Sbjct: 202 FCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDL 261
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
G Q +Y+ K G+ L+++ +CG I+ A F N + W ++ A
Sbjct: 262 QKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAY 321
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTF 150
+++ ++F Q + T ++P F
Sbjct: 322 GQISDLAKSFEIF--GQMQATGIHPNQF 347
>gi|125539724|gb|EAY86119.1| hypothetical protein OsI_07491 [Oryza sativa Indica Group]
Length = 787
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/247 (41%), Positives = 143/247 (57%)
Query: 1 LKLCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
L+LC +S+ EI W L + + D+ + L IQ G +D + C IL+SC
Sbjct: 538 LRLCLSLSNSEISWGTLFQEFAELGDHLGILNLFHVIQRSGGVLDYPTACLILSSCGKKA 597
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L G QA AY+ KRGL S + + LI++ S CG + A AF++T +NS SWT II
Sbjct: 598 HLPEGLQAHAYLMKRGLSSTGCMCDYLIDMYSGCGSLTHAFEAFRNTSGRNSSSWTSIIM 657
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
A V +G P A+ LF + S N +F S LKA A +GLV EA++ F+SM EVY I+
Sbjct: 658 ASVENGCPETAIRLFVQMLRKEKSPNSLSFLSVLKACAEIGLVNEAFQFFVSMTEVYKIQ 717
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
PSEEHYS M+E LGRAGMF+E FI +VP + W L +++ +G+ K + A D
Sbjct: 718 PSEEHYSHMIEVLGRAGMFKEAEHFIDSVVPSESGASAWSLLCSAAKQNGNAKTMRLAAD 777
Query: 241 KLLELDP 247
+L +L P
Sbjct: 778 RLSKLTP 784
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%)
Query: 42 GFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD 101
G +D + + L SC + + L G A + K + P V + L+++ ++CG +++A
Sbjct: 378 GKLDQFIVASSLKSCASDLDLAAGRMLHACVLKFDVNPDPFVISSLVDMYAKCGSLEEAH 437
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+ F T + +++W+ IIS +G A+ LF+ Q + N T+ S L A +G
Sbjct: 438 ILFSRTKDPCTVAWSAIISGSCLNGQFERAIHLFRTMQLEHVQPNEFTYTSVLTACMALG 497
Query: 162 LV 163
V
Sbjct: 498 DV 499
Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+Y++ L + + + +G Q YM K G + + NCLI RC ++ F
Sbjct: 205 DAYTLSVALRAASSLGHVRLGYQLHCYMIKSGFVPSEFLENCLIEFYGRCRELQLMQKVF 264
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
K+ +SW +I ++ EAL F+D ++ + T S L
Sbjct: 265 DEMNAKDLVSWNIVIQCYADNLCDEEALVHFRDLMYKCAECDEYTLGSIL 314
>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 573
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/414 (28%), Positives = 196/414 (47%), Gaps = 55/414 (13%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
++S + W +++ A YE + L +R++ D ++ ++N+C ++
Sbjct: 162 MLSKDLVTWTVMIGAYADCNAYESL-VLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRA 220
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
A Y+ + G +G +I++ ++CG ++ A F EKN +SW+ +I+A H
Sbjct: 221 RFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYH 280
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
G +A+DLF N TF S L A + GL+ E R F SM E + + P +H
Sbjct: 281 GRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKH 340
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
Y+ MV+ LGRAG +E L I+ + K +W LL + R+H M+LA+ A + LLEL
Sbjct: 341 YTCMVDLLGRAGRLDEALRLIEAMTVEK-DERLWSALLGACRIHSKMELAEKAANSLLEL 399
Query: 246 ---DPGMYV--------------------------------GCWIEIQNKIYEFVSNEE- 269
+PG YV WIE+ NK Y+F +
Sbjct: 400 QPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRS 459
Query: 270 --LTSEVSDKLAEIEENMKELGFVLNRS--------------LYQTKMK-AVALGLISFP 312
+ E+ + L + + ++ G+V + LY K A+A GLI+ P
Sbjct: 460 HPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIP 519
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G P R+ K++ +CG H+ + +S+I+ R ++V+D FHHF DG CSC D +
Sbjct: 520 EGEPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRDANRFHHFNDGTCSCGDYW 573
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W++++ KA D+ + + C D+Y++ ++ +C + L +G +
Sbjct: 69 WSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVL 128
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K GL+S V L+++ ++C ++DA F+ K+ ++WT +I A + + E+L
Sbjct: 129 KHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYAD-CNAYESLV 187
Query: 134 LF 135
LF
Sbjct: 188 LF 189
>gi|115446475|ref|NP_001047017.1| Os02g0529900 [Oryza sativa Japonica Group]
gi|49388326|dbj|BAD25438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113536548|dbj|BAF08931.1| Os02g0529900 [Oryza sativa Japonica Group]
gi|125582364|gb|EAZ23295.1| hypothetical protein OsJ_06992 [Oryza sativa Japonica Group]
gi|215696993|dbj|BAG90987.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 787
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/247 (41%), Positives = 142/247 (57%)
Query: 1 LKLCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
L+LC +S+ EI W L + + D+ + L IQ G +D + C IL+SC
Sbjct: 538 LRLCLSLSNSEISWGTLFQEFAELGDHLGILNLFHVIQRSGGVLDYPTACLILSSCGKKA 597
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L G QA AY+ KRGL S + + LI++ S CG + A AF++T +NS SWT II
Sbjct: 598 HLPEGLQAHAYLMKRGLSSTGCMCDYLIDMYSGCGSLTHAFEAFRNTSGRNSSSWTSIIM 657
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
A V +G P A+ LF + S N F S LKA A +GLV EA++ F+SM EVY I+
Sbjct: 658 ASVENGCPETAIRLFVQMLRKEKSPNSLAFLSVLKACAEIGLVNEAFQFFVSMTEVYKIQ 717
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
PSEEHYS M+E LGRAGMF+E FI +VP + W L +++ +G+ K + A D
Sbjct: 718 PSEEHYSHMIEVLGRAGMFKEAEHFIDSVVPSESGASAWSLLCSAAKQNGNAKTMRLAAD 777
Query: 241 KLLELDP 247
+L +L P
Sbjct: 778 RLSKLTP 784
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%)
Query: 42 GFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD 101
G +D + + L SC + + L G A + K + P V + L+++ ++CG +++A
Sbjct: 378 GKLDQFIVASSLKSCASDLDLAAGRMLHACVLKFDVNPDPFVISSLVDMYAKCGSLEEAH 437
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+ F T + +++W+ IIS +G A+ LF+ Q + N T+ S L A +G
Sbjct: 438 ILFSRTKDPCTVAWSAIISGSCLNGQFERAIHLFRTMQLEHVQPNEFTYTSVLTACMALG 497
Query: 162 LV 163
V
Sbjct: 498 DV 499
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+Y++ L + + + +G Q YM K G + + NCLI RC ++ F
Sbjct: 205 DAYTLSVALRAASSLGHVRLGYQLHCYMIKSGFVPSEFLENCLIEFYGRCRELQLMQKVF 264
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
K+ +SW +I ++ EAL F+D ++ + T S L
Sbjct: 265 DEMNAKDLVSWNIVIQCYADNLCDEEALVHFRDLMYKCAECDEYTLGSIL 314
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 190/410 (46%), Gaps = 59/410 (14%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDIL--NSCLNPILLNVGTQA 68
E+ W ++ I+ D + + +++ D Y+ ++ +SCL L G Q
Sbjct: 1165 EVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTA--LEQGKQI 1222
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A + K VG L+++ +CG + DA F+ + + W ++ HGH
Sbjct: 1223 HANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHV 1282
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
EAL+LF+ Q + TF L A + GL EAY+ F +M + Y I P EHYS
Sbjct: 1283 DEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSC 1342
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP- 247
+V+ALGRAG +E E + +P K ++R LL + R GD + AK DKLL LDP
Sbjct: 1343 LVDALGRAGRIQEA-ENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPS 1401
Query: 248 ---------GMYVG-------------------------CWIEIQNKIYEFVSNEELTSE 273
+Y WI+++NK++ FV ++ +
Sbjct: 1402 DSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQ 1461
Query: 274 VSDKLAEIEENMKEL----------GFVL--------NRSLYQTKMK-AVALGLISFPHG 314
S +IE+ MK + F L R+LY K A+A GLIS P
Sbjct: 1462 ASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPS 1521
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
RVIK++ +CG HSA + +S + +RE+V++D FHHF++G CSC D
Sbjct: 1522 ATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGD 1571
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS ++ IL++ + L++G Q A + K V N L+N+ S+ G + A+ F
Sbjct: 893 DSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF 952
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
++PE + +SW +IS+ + EA+ F+D
Sbjct: 953 INSPELDLISWNTMISSYAQNNLEMEAICTFRD 985
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 45 DSYSICDILNSCLNPI---LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD 101
D +++ +L +C +G+Q Y K G+I+ V LI++ S+ GK+D+A+
Sbjct: 994 DQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAE 1053
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ + SW I+ + +AL+ F ++ T +A+KA
Sbjct: 1054 FLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKA 1108
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 9/131 (6%)
Query: 12 IPWNLLLKACIKAKD--YEMVHELLERIQLCCGFIDSYSICDILNSCLNPI-----LLNV 64
+ WN +L A + D YE V E L F +SI + + L + + V
Sbjct: 678 VTWNSILAAYAQFADSSYENVLEGFRLFGLLREF--GFSITRLTLAPLLKLCLLSGFVQV 735
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
Y K G V L+NI + G + A L F PE++++ W ++ A V
Sbjct: 736 SETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVE 795
Query: 125 HGHPSEALDLF 135
+ EAL F
Sbjct: 796 NSFQDEALRFF 806
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 190/377 (50%), Gaps = 58/377 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S ++ +L +C + L G Y+ +RGL S V + L+ + RCGK++ F
Sbjct: 284 NSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVF 343
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+++ +SW +IS+ HG+ +A+ +F++ S P TF S L A + GLV
Sbjct: 344 DRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVE 403
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIV--PGKLCPLIWRTL 222
E RLF +M + I+P EHY+ MV+ LGRA +E + ++ + PG P +W +L
Sbjct: 404 EGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPG---PKVWGSL 460
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------------------------- 251
L S R+HG+++LA+ A +L L+P G YV
Sbjct: 461 LGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQ 520
Query: 252 ----GCWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS--LYQTKMK 302
CW+E++ K+Y FVS +E L ++ L ++ E+MKE G++ LY+ + +
Sbjct: 521 KLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETE 580
Query: 303 -------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
A+A GLI+ G P R+ K++ +C H +F+S +E+E++V+D
Sbjct: 581 EKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDV 640
Query: 350 GSFHHFKDGKCSCKDAY 366
FH FK+G CSC D +
Sbjct: 641 NRFHRFKNGVCSCGDYW 657
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 19/241 (7%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL----LNVGTQAQ 69
WN L +A A E V L ++ D ++ +L +C+ L G +
Sbjct: 146 WNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIH 205
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
A++T+RG SH + L+++ +R G +D A F P +N +SW+ +I+ +G
Sbjct: 206 AHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAF 265
Query: 130 EALDLFKD--KQWRYTSMNPTTFRSALKAYALM-----GLVGEAYRLFLSMEEVYHIEPS 182
EAL F++ ++ + +S N T S L+A A + G + Y L ++ + +
Sbjct: 266 EALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPV--- 322
Query: 183 EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
S +V GR G E + + + W +L+ S VHG K A +++
Sbjct: 323 ---ISALVTMYGRCGKLEVGQRVFDRMHDRDV--VSWNSLISSYGVHGYGKKAIQIFEEM 377
Query: 243 L 243
L
Sbjct: 378 L 378
>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Brachypodium distachyon]
Length = 747
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 174/362 (48%), Gaps = 64/362 (17%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G + A K GL VG CLI++ ++CGK+ +A L F+ P +++ W IIS
Sbjct: 389 LQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISG 448
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
HGH +EAL LF Q + TF S L A + GLV + F M+ Y I P
Sbjct: 449 LGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVP 508
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
+HY+ M + LGRAG +E FI+ + P K +W LL + R+HG++++ K A
Sbjct: 509 IAKHYACMADMLGRAGQLDEAFNFIQNM-PIKPDSAVWGALLGACRIHGNVEMGKVASQN 567
Query: 242 LLELDP---GMY---------VGCW-----------------------IEIQNKIYEFVS 266
L ELDP G Y VG W IE++ + F S
Sbjct: 568 LFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYS 627
Query: 267 ---------NEELTSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMK 302
+EE+ +E+ LA+I + +G+V + S ++
Sbjct: 628 GNQTEPHPQHEEIQAELRSLLAKI----RSVGYVSDYSFVLQDVEDDEKEHILNNHSERL 683
Query: 303 AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
A+A G+I+ P P + K++ +CG H+A +++S I ERE++V+D FHHFKDG CSC
Sbjct: 684 AIAFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDSNRFHHFKDGHCSC 743
Query: 363 KD 364
D
Sbjct: 744 GD 745
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 71 YMTKRGL-ISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
Y+ +RG + GN ++++ ++ I+ A F S P ++S+SW +I+ + +G +
Sbjct: 295 YVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLAN 354
Query: 130 EALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRL 169
EA++ + Q ++ + TF S L AY+ +G + + R+
Sbjct: 355 EAVERYGHMQ-KHEGLKAIQGTFVSVLPAYSHLGALQQGMRM 395
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 13/167 (7%)
Query: 2 KLCSLISDVEIP-WNLLLKA-CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP 59
K+ +S+ ++P WN +L C A+ E V L R+ D+ ++ +L P
Sbjct: 124 KVFDEMSERDVPAWNAMLSGLCRNARAAEAV-GLFGRMVGEGVAGDTVTVSSVL-----P 177
Query: 60 ILLNVGTQAQA-----YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLS 114
+ + +G Q A Y K GL V N LI++ + G +++A F ++ ++
Sbjct: 178 MCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVT 237
Query: 115 WTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
W IIS G + AL +F+ + S + T S A A G
Sbjct: 238 WNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGG 284
>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 190/410 (46%), Gaps = 59/410 (14%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDIL--NSCLNPILLNVGTQA 68
E+ W ++ I+ D + + +++ D Y+ ++ +SCL L G Q
Sbjct: 1165 EVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTA--LEQGKQI 1222
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A + K VG L+++ +CG + DA F+ + + W ++ HGH
Sbjct: 1223 HANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHV 1282
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
EAL+LF+ Q + TF L A + GL EAY+ F +M + Y I P EHYS
Sbjct: 1283 DEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSC 1342
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP- 247
+V+ALGRAG +E E + +P K ++R LL + R GD + AK DKLL LDP
Sbjct: 1343 LVDALGRAGRIQEA-ENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPS 1401
Query: 248 ---------GMYVG-------------------------CWIEIQNKIYEFVSNEELTSE 273
+Y WI+++NK++ FV ++ +
Sbjct: 1402 DSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQ 1461
Query: 274 VSDKLAEIEENMKEL----------GFVL--------NRSLYQTKMK-AVALGLISFPHG 314
S +IE+ MK + F L R+LY K A+A GLIS P
Sbjct: 1462 ASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPS 1521
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
RVIK++ +CG HSA + +S + +RE+V++D FHHF++G CSC D
Sbjct: 1522 ATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGD 1571
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS ++ IL++ + L++G Q A + K V N L+N+ S+ G + A+ F
Sbjct: 893 DSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF 952
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
++PE + +SW +IS+ + EA+ F+D
Sbjct: 953 INSPELDLISWNTMISSYAQNNLEMEAICTFRD 985
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 45 DSYSICDILNSCLNPI---LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD 101
D +++ +L +C +G+Q Y K G+I+ V LI++ S+ GK+D+A+
Sbjct: 994 DQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAE 1053
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ + SW I+ + +AL+ F ++ T +A+KA
Sbjct: 1054 FLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKA 1108
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 9/131 (6%)
Query: 12 IPWNLLLKACIKAKD--YEMVHELLERIQLCCGFIDSYSICDILNSCLNPI-----LLNV 64
+ WN +L A + D YE V E L F +SI + + L + + V
Sbjct: 678 VTWNSILAAYAQFADSSYENVLEGFRLFGLLREF--GFSITRLTLAPLLKLCLLSGFVQV 735
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
Y K G V L+NI + G + A L F PE++++ W ++ A V
Sbjct: 736 SETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVE 795
Query: 125 HGHPSEALDLF 135
+ EAL F
Sbjct: 796 NSFQDEALRFF 806
>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Glycine max]
Length = 686
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 187/377 (49%), Gaps = 60/377 (15%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
+ I +L++C L +G A K + + VG+ L+++ +CG I+ A+ F+
Sbjct: 313 FMISSVLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFRE 372
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY--TSMNPTTFRSALKAYALMGLVG 164
PE+N ++W +I + G AL LF++ +++ T S L A + G V
Sbjct: 373 MPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVE 432
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLI--WRTL 222
++F SM Y IEP EHY+ +V+ LGR+G+ + EFIK + + P I W L
Sbjct: 433 RGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRM---PILPTISVWGAL 489
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYVG--------------------------- 252
L + ++HG KL K A +KL ELDP G +V
Sbjct: 490 LGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRDIGIK 549
Query: 253 -----CWIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRSL-------- 296
W+ ++N+++ F + + E SE+ LA++ MK+ G+V + +L
Sbjct: 550 KNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDANLSLFDLEEE 609
Query: 297 -------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
Y ++ A+A GLI+ P G+P R+ K++ +C HSA +F+S I+ RE++V+D
Sbjct: 610 EKASEVWYHSEKIALAFGLITLPRGVPIRITKNLRICIDCHSAIKFISKIVGREIIVRDN 669
Query: 350 GSFHHFKDGKCSCKDAY 366
FH FKDG CSCKD +
Sbjct: 670 NRFHRFKDGWCSCKDYW 686
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
++ + C LN+C + + L +G Q ++ + +V N LI+ +CG I ++L F
Sbjct: 209 NAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSSELVF 268
Query: 105 K--STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF--RSALKAYALM 160
+ +N +SW +++A V + A +F + + PT F S L A A +
Sbjct: 269 SRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQAR---KEVEPTDFMISSVLSACAEL 325
Query: 161 G 161
G
Sbjct: 326 G 326
>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 790
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/372 (29%), Positives = 182/372 (48%), Gaps = 55/372 (14%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y+ + SC G Q A + K G S + GN LI + ++CG +++A F++
Sbjct: 418 YAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRT 477
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
P +S+SW +I+A HGH EA+D++++ + + TF + L A + GLV +
Sbjct: 478 MPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQG 537
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226
+ F SME VY I P +HY+ +++ L R+G F E I+ + P K IW LL
Sbjct: 538 RKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESL-PFKPTAEIWEALLSGC 596
Query: 227 RVHGDMKLAKYALDKLLELDP---GMY-------------------------------VG 252
RVHG+M+L A DKL L P G Y V
Sbjct: 597 RVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVA 656
Query: 253 C-WIEIQNKIYEFVSNEELTSE---VSDKLAEIEENMKELGFVLNRSLY----------- 297
C WIE++ +++ F+ ++ E V L ++ + M+ LG+V + S
Sbjct: 657 CSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKE 716
Query: 298 -----QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
++ AVA GL+ P G R+ K++ CG H+ RF+S +++R+++++D F
Sbjct: 717 DMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRF 776
Query: 353 HHFKDGKCSCKD 364
HHF++G+CSC +
Sbjct: 777 HHFRNGECSCGN 788
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 89/188 (47%), Gaps = 6/188 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N ++ + Y+ E++ R+ +D ++ ++ +C N LL +G Q AY
Sbjct: 252 VAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAY 311
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ +R S N L+ + +CGK ++A F+ P K+ +SW ++S V+ GH EA
Sbjct: 312 VLRREDFSF-HFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEA 370
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+FK+ + + N ++ + A G E +LF M+ EP + +S ++
Sbjct: 371 KLIFKEMKEK----NILSWMIMISGLAENGFGEEGLKLFSCMKR-EGFEPCDYAFSGAIK 425
Query: 192 ALGRAGMF 199
+ G +
Sbjct: 426 SCAVLGAY 433
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 8/139 (5%)
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGK----IDDADLAFKSTPEKNSLSWTFIISA 121
Q A K G +V N L+++ SRC + A F PEK+ SWT +++
Sbjct: 169 VQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTG 228
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
V +G +L K +M + + + Y GL EA + M IE
Sbjct: 229 YVKNGCFDLGKELLKGMD---ENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSS-GIEL 284
Query: 182 SEEHYSIMVEALGRAGMFE 200
E Y ++ A A + +
Sbjct: 285 DEFTYPSVIRACANARLLQ 303
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 191/410 (46%), Gaps = 59/410 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W ++ ++ E L +++ G ++ ++ L+SC L +G Q
Sbjct: 371 ISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGR 430
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + GN L+ + +CG I++A F+ EK+ +SW +I+ HG EA
Sbjct: 431 LVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEA 490
Query: 132 LDLFKDKQWRYTSMNP--TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
L LF+ + ++ P T L A + G V + F SM + Y I + +HY+ M
Sbjct: 491 LALFESMK---MTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCM 547
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
++ LGRAG +E L +K + P W LL +SR+HGD +L + A +K+ E++P
Sbjct: 548 IDLLGRAGRLDEALNLMKSM-PFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDN 606
Query: 248 -GMYV--------------------------------GCWIEIQNKIYEFVSNEELTSEV 274
GMYV W+EIQNK + F + E
Sbjct: 607 SGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEA 666
Query: 275 SDKLAEIEE---NMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMP 316
A +EE +K+ GFV + L Y ++ AVA G++S P G P
Sbjct: 667 ERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRP 726
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RVIK++ +C H+A + +S I +R+++V+D FHHF +G CSC D +
Sbjct: 727 IRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 11/162 (6%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
NCL+ R ++DDA F P ++ +SW +I+ +G SEA LF++ R
Sbjct: 219 NCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR--- 275
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
+ + + + + G++ EA R+F M E +E ++ M+ ++ E+ E
Sbjct: 276 -DVFAWTAMVSGFVQNGMLDEATRIFEEMP-----EKNEVSWNAMIAGYVQSQQIEKARE 329
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+ P + W T++ G++ AK D++ + D
Sbjct: 330 LFDQM-PSRNTS-SWNTMVTGYAQCGNIDQAKILFDEMPQRD 369
Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 3/146 (2%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N ++ ++CG ID A + F P+++ +SW +IS G EAL LF +
Sbjct: 343 NTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGI 402
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
+N + AL + A + + +L + + + + ++ G+ G EE +
Sbjct: 403 LNRSALACALSSCAEIAALELGKQLHGRLVKA-GFQTGYIAGNALLAMYGKCGSIEEAFD 461
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHG 230
+ I + W T++ HG
Sbjct: 462 VFEDITEKDIVS--WNTMIAGYARHG 485
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M +R +++ A+ + ++ N K D A F+ P+++ +SW ++S V +G+ S A
Sbjct: 86 MRRRSTVTYNAMISGYLSNN----KFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAA 141
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSM 173
LF + + ++ + L +A G V EA ++F M
Sbjct: 142 RALFN----QMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM 179
>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
Length = 684
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 121/410 (29%), Positives = 194/410 (47%), Gaps = 56/410 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ A ++ + E L R + + I +L++C L +G A+
Sbjct: 276 VSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAH 335
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + + VG+ L+++ +CG I+D++ AF PEKN ++ +I + G A
Sbjct: 336 AVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMA 395
Query: 132 LDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
L LF+D R P TF S L A + G V ++F SM+ Y IEP EHYS +
Sbjct: 396 LALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCI 455
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
V+ LGRAGM E+ EFIK + P K +W L + R+HG L A + L +LDP
Sbjct: 456 VDMLGRAGMVEQAFEFIKKM-PIKPTISVWGALQNACRMHGKPHLGILAAENLFKLDPKD 514
Query: 248 ------------------------------GMYVGC---WIEIQNKIYEFVSNE---ELT 271
G+ G WI ++N+++ F + + ++
Sbjct: 515 SGNHVLLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYSWITVKNQVHAFQAKDRSHKMN 574
Query: 272 SEVSDKLAEIEENMKELGFV--LNRSLY-------------QTKMKAVALGLISFPHGMP 316
E+ L ++ M+ G+ L SLY ++ A+A GL++ P +P
Sbjct: 575 KEIQTMLTKLRNKMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLVALPLSVP 634
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+ K++ +CG HS +F+S ++RE++V+D FH FKDG CSCKD +
Sbjct: 635 IRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Query: 11 EIP------WNLLLKACI-KAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLN 63
EIP WN + + + E + +E + G +S + C LN+C + +LL+
Sbjct: 168 EIPERNLETWNAYISNSVTDGRPKEAIEAFIE-FRRIGGQPNSITFCGFLNACSDGLLLD 226
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
+G Q + + G + +V N LI+ +C +I +++ F KN++SW +++A V
Sbjct: 227 LGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYV 286
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+ +A L+ + + S L A A M
Sbjct: 287 QNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMA 324
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%)
Query: 81 PAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQW 140
P + N LIN+ S+ + A L + TP +N +SWT ++S +GH S AL F + +
Sbjct: 42 PFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLVSGLAQNGHFSTALFEFFEMRR 101
Query: 141 RYTSMNPTTFRSALKAYALMGL 162
+ N TF KA A + L
Sbjct: 102 EGVAPNDFTFPCVFKAVASLRL 123
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 38/93 (40%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G Q A K G I VG ++ + DDA F PE+N +W IS V
Sbjct: 126 TGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSV 185
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
G P EA++ F + + N TF L A
Sbjct: 186 TDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNA 218
>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
Length = 785
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 110/409 (26%), Positives = 195/409 (47%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+PW ++ A ++ YE +L +++ D + +L + + L++G Q ++
Sbjct: 378 VPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSF 437
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G +S+ G+ L+++ ++CG I DA F+ P++N +SW +ISA +G
Sbjct: 438 IIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEAT 497
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L FK+ + +F L A + GLV E F SM ++Y ++P EHY+ +V+
Sbjct: 498 LKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVD 557
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL----DP 247
L R+G F E E + +P ++W ++L + R+H + +LA+ A D+L + D
Sbjct: 558 MLCRSGRFNEA-EKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDA 616
Query: 248 GMYVG--------------------------------CWIEIQNKIYEFVSNEE---LTS 272
YV W+EI+++ + F +N+
Sbjct: 617 APYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIE 676
Query: 273 EVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPT 317
E+ K+ + + M+ELG+ + S Y ++ A+A LIS P G P
Sbjct: 677 EIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPI 736
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ C H+A + +S I+ RE+ V+D FHHF+DG CSC D +
Sbjct: 737 LVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 785
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 67/147 (45%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N+++ ++ +L +Q + +L+ N + +G Q A
Sbjct: 277 VSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQ 336
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
S VGN L+++ ++CGK ++A++ F + ++++ WT +ISA V G E
Sbjct: 337 TIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEG 396
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L LF + + TF S L+A A
Sbjct: 397 LQLFNKMRQASVIADQATFASLLRASA 423
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 36 RIQLCCGF------IDSYSICDIL--NSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL 87
R+ L C IDS++ +L N L+ I+L G Q +++ K + + V N L
Sbjct: 194 RLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVL--GQQIHSFVIKTNFVWNVFVSNAL 251
Query: 88 ININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP 147
++ S+ + DA F PE++ +S+ IIS G A DLF++ Q +T+ +
Sbjct: 252 LDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQ--FTAFDR 309
Query: 148 TTF 150
F
Sbjct: 310 KQF 312
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
++ + W +L+ + ++ EL ++Q C D + +L+ C + N
Sbjct: 104 MVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQI 163
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
TQ Q + K G S VGN L++ + ++D A FK PE +S ++ ++ A +
Sbjct: 164 TQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANI 221
>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like, partial [Vitis vinifera]
Length = 825
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 110/409 (26%), Positives = 195/409 (47%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+PW ++ A ++ YE +L +++ D + +L + + L++G Q ++
Sbjct: 418 VPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSF 477
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G +S+ G+ L+++ ++CG I DA F+ P++N +SW +ISA +G
Sbjct: 478 IIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEAT 537
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L FK+ + +F L A + GLV E F SM ++Y ++P EHY+ +V+
Sbjct: 538 LKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVD 597
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL----DP 247
L R+G F E E + +P ++W ++L + R+H + +LA+ A D+L + D
Sbjct: 598 MLCRSGRFNEA-EKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDA 656
Query: 248 GMYVG--------------------------------CWIEIQNKIYEFVSNEE---LTS 272
YV W+EI+++ + F +N+
Sbjct: 657 APYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIE 716
Query: 273 EVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPT 317
E+ K+ + + M+ELG+ + S Y ++ A+A LIS P G P
Sbjct: 717 EIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPI 776
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ C H+A + +S I+ RE+ V+D FHHF+DG CSC D +
Sbjct: 777 LVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 825
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 67/147 (45%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N+++ ++ +L +Q + +L+ N + +G Q A
Sbjct: 317 VSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQ 376
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
S VGN L+++ ++CGK ++A++ F + ++++ WT +ISA V G E
Sbjct: 377 TIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEG 436
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L LF + + TF S L+A A
Sbjct: 437 LQLFNKMRQASVIADQATFASLLRASA 463
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 2/157 (1%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
++ + W +L+ + ++ EL ++Q C D + +L+ C + N
Sbjct: 109 MVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQI 168
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
TQ Q + K G S VGN L++ + ++D A FK PE +S+S+ +I+
Sbjct: 169 TQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKD 228
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
G +A++LF + Q + + PT F A A +GL
Sbjct: 229 GLDEKAVNLFVEMQ--NSGLKPTEFTFAAVLCANIGL 263
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 54 NSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSL 113
N L+ I+L G Q +++ K + + V N L++ S+ + DA F PE++ +
Sbjct: 260 NIGLDDIVL--GQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGV 317
Query: 114 SWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
S+ IIS G A DLF++ Q +T+ + F
Sbjct: 318 SYNVIISGYAWDGKHKYAFDLFRELQ--FTAFDRKQF 352
>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
Length = 734
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 114/382 (29%), Positives = 186/382 (48%), Gaps = 28/382 (7%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
++ W+ L+ ++ E ++ ++ ++S+ + +C LN+G+QA
Sbjct: 355 DVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHG 414
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
KRGL+S+ + ++ + S+CG++D A AF+S E ++++WT IIS HG+ +E
Sbjct: 415 DAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAE 474
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL F+ Q N TF + L A + GLV EA + SM Y ++P+ +HY M+
Sbjct: 475 ALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMI 534
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG-- 248
+ RAG+ E LE I + P + + W++LL H D+KL K A + L LDPG
Sbjct: 535 DTYSRAGLLXEALELINRM-PFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDT 593
Query: 249 --------MY--VGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRS--- 295
+Y G W E + + ++ EL EVS ++ + +LN
Sbjct: 594 AGYILLFNLYSAFGKW-EEAGHVRKLMAERELKKEVSCSWISVKGQVHRPVRLLNEEDDV 652
Query: 296 -----------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIEREL 344
L ++ A+A GLIS P V K++ C H + +S + R++
Sbjct: 653 SCSLPARKEQLLDHSEKLAIAFGLISTEDNAPILVFKNLRACRDCHEFGKQVSMVTGRQI 712
Query: 345 VVKDPGSFHHFKDGKCSCKDAY 366
VV+D FHHFK GKCSC D +
Sbjct: 713 VVRDSTRFHHFKSGKCSCNDYW 734
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ +AK E+ EL R+ + +D + +L C ++G Q ++
Sbjct: 255 VTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXLEDWDMGKQIHSH 314
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G S +VG L++ +CG I+ A +F E N +SW+ +IS G +
Sbjct: 315 IVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDC 374
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
+ +F + +N + S +A A
Sbjct: 375 IKIFTSLRSEGVVLNSFIYTSVFQACA 401
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W +++ A K + E L +Q +S +L SCL P L +G Q ++
Sbjct: 154 VSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQMHSH 213
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + L ++ V + N+ RCG ++ A L F +N+++WT ++ A
Sbjct: 214 VIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVA 273
Query: 132 LDLFKDKQWRYTSMNPTTFRSALK 155
L+LF ++ F LK
Sbjct: 274 LELFARMAMEGVELDEFVFSIVLK 297
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 75 RGLISHPA--VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
R + +P+ + NCL+ + CG D F KN +SW +ISA +G +A+
Sbjct: 114 RRTVKNPSGSIENCLLRMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAI 173
Query: 133 DLFKDKQWRYTSMNPTTFRSALKA 156
LF D Q N + S L++
Sbjct: 174 RLFSDMQASGIRPNSAVYMSLLQS 197
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 114/411 (27%), Positives = 200/411 (48%), Gaps = 60/411 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ ++ L +Q+ D ++ +L++C L +G ++Y
Sbjct: 81 VSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWVESY 140
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + + + N LI++ ++CG +D A F+S E+N +SWT +I HG EA
Sbjct: 141 VEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEA 200
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ +F++ + + F L A + GLV + R F SM + + I P EHY MV+
Sbjct: 201 VAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVD 260
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
L RAG+ +E L+F++ + P P++WRTL+ + R HG++KL + +L+ +P
Sbjct: 261 MLCRAGLVKEALKFVQEM-PIDPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPMHES 319
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEE---LTSE 273
YV IE+ N+IYEFV+ ++ + E
Sbjct: 320 NYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDNEIYEFVAGDKSHAQSKE 379
Query: 274 VSDKLAEIEENMKELGFV------------------LNRSLYQTKMKAVALGLISFPHGM 315
+ + + E+ + MK G++ LNR ++ A+A L++ P G
Sbjct: 380 IYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLNR---HSEKLAIAFALLNTPPGT 436
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C HSA +F+S I RE+VV+D FHHFK+G CSC+D +
Sbjct: 437 LIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKNGLCSCRDFW 487
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 11/202 (5%)
Query: 33 LLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININS 92
+LER +L F + +L +C LN+G + K G V N L+++
Sbjct: 1 MLERKKLPNKFTYPF----VLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYC 56
Query: 93 RC----GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT 148
C G I+ A F + +S+SW+ +I V G S+A++LF++ Q + +
Sbjct: 57 CCRGGEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEI 116
Query: 149 TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKG 208
T S L A +G + E + S E ++ + E + +++ + G ++ +
Sbjct: 117 TMVSVLSACTGLGAL-ELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRS 175
Query: 209 IVPGKLCPLIWRTLLLSSRVHG 230
+ + W +++ +HG
Sbjct: 176 MRERNIVS--WTSVIGGLAMHG 195
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 123/408 (30%), Positives = 196/408 (48%), Gaps = 58/408 (14%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W+ ++ A K++ + EL + D ++ ++++C + L VG + ++
Sbjct: 88 WSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVE 147
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ +G LI++ ++CG I+ A F PEK+ +W+ +I NHG E+L
Sbjct: 148 SNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLS 207
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF N TF L A +GLV E + F SM EV+ IEP+ EHY MV+ L
Sbjct: 208 LFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLL 267
Query: 194 GRAGMFEEVLEFIKGIV--PGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
GR+G EE + I+ + P +IWR LL + R+H ++++A+ A+ KL LDP G
Sbjct: 268 GRSGHVEEARQLIRSMTFEPD---TIIWRALLGACRIHKNVEIAEEAMAKLRVLDPLGDG 324
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNEEL---TSE 273
YV W IE KI+EFVS + L + E
Sbjct: 325 HYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPRSKE 384
Query: 274 VSDKLAEIEENMKELGF------VLN--------RSLYQTKMK-AVALGLISFPHGMPTR 318
+ L E+ + +K+ G+ VL RSL + K A+A L++ P R
Sbjct: 385 IYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLAIAFALLTTPARSTIR 444
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ C HSA + +S + +R+L+V+D FHHF +G+CSCKD +
Sbjct: 445 ITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCKDYW 492
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 193/411 (46%), Gaps = 60/411 (14%)
Query: 14 WNLLLKA-CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN +L K E + LE ++ + D ++ I+N C + L G Q + +
Sbjct: 680 WNSILAGYANKGLKKESFNHFLEMLESDIEY-DVLTMVTIVNLCSSLPALEHGDQLHSLI 738
Query: 73 TKRGLISHPAV-GNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K+G ++ V L+++ S+CG I A F + KN +SW +IS HG EA
Sbjct: 739 IKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEA 798
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L L+++ + N TF + L A + GLV E R+F SM+E Y+IE EHY+ MV+
Sbjct: 799 LILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVD 858
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD---PG 248
LGRAG E+ EF++ + P + W LL + RVH DM + + A +L ELD PG
Sbjct: 859 LLGRAGRLEDAKEFVEKM-PIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPG 917
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEEL---TSE 273
YV WIEI ++I F + + T E
Sbjct: 918 PYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEE 977
Query: 274 VSDKLAEIEENMKELGFVLNRSLYQTKMK------------------AVALGLISFPHGM 315
+ + L + K LG++ + S +K A++LGLIS P
Sbjct: 978 IYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKS 1037
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV K++ +CG H+A +F+S I R ++ +D FHHF++GKCSC D +
Sbjct: 1038 TIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 1088
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 3/147 (2%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLN 63
SL+ E+ +N LL ++ E EL +Q G D ++ +L C N N
Sbjct: 437 SLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDN 496
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G Q A++ + + + V L+++ S CG+++ A F E+N+ SW +I
Sbjct: 497 QGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQ 556
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTF 150
+G EAL LF KQ + + P F
Sbjct: 557 QNGETQEALRLF--KQMQLNGIKPDCF 581
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 81/162 (50%), Gaps = 4/162 (2%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN +++ + + + L +++QL D +S+ +L+SC++ G + ++
Sbjct: 548 WNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIV 607
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ + + L+++ ++CG +D A + T +K+ + ++SA VN G ++A +
Sbjct: 608 RNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKN 667
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175
LF + R T++ + S L YA GL E++ FL M E
Sbjct: 668 LFDQMEQRNTAL----WNSILAGYANKGLKKESFNHFLEMLE 705
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 3/200 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ +K +E + +R+ D+++ L C + G Q +
Sbjct: 242 VTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSK 301
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G VGN LI++ ++C + F E+N ++W IISA GH ++A
Sbjct: 302 LIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDA 361
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY-SIMV 190
L LF Q N S L A A + +G+ L + V ++ S+ S +V
Sbjct: 362 LVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHL--VRNLLNSDIILGSALV 419
Query: 191 EALGRAGMFEEVLEFIKGIV 210
+ + GM EE + + ++
Sbjct: 420 DMYSKCGMVEEAHQVFRSLL 439
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 65/129 (50%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
++ WN ++ A + + L R+Q + +++ IL + + G +
Sbjct: 342 QVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHG 401
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
++ + L S +G+ L+++ S+CG +++A F+S E+N +S+ +++ V G E
Sbjct: 402 HLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEE 461
Query: 131 ALDLFKDKQ 139
AL+L+ D Q
Sbjct: 462 ALELYHDMQ 470
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ A + DY V L R++ F D ++ ++ +C+ + Q Q+ +
Sbjct: 143 WNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVV 202
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K GL + VG L++ +R G +DDA + + ++W +I+ V EA
Sbjct: 203 KAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWG 262
Query: 134 LFKDKQWRYTSMNPTTFRSALK 155
+F + TF SAL+
Sbjct: 263 IFDRMLKIGVCPDNFTFASALR 284
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 183/368 (49%), Gaps = 54/368 (14%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L +C NP+ L G + A + K GL++ AV N L+++ +CG ++DA F+ ++
Sbjct: 438 VLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRD 497
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
++W +I +G EAL ++ + N TF + L A + LV E R F
Sbjct: 498 VVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFA 557
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231
M + Y I P+E+HY+ MV+ L RAG E + I I P K +W LL + R+H +
Sbjct: 558 FMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTI-PLKPSAAMWGALLAACRIHCN 616
Query: 232 MKLAKYALDKLLELDP---GMYVG--------------------------------CWIE 256
+++ + A + L+L+P G+YV WIE
Sbjct: 617 VEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIE 676
Query: 257 IQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL---------------YQ 298
I +++ FV+ ++ T E+ +L +++ MK LG+V + +
Sbjct: 677 IAGEVHSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDTRFVMHDLDDEGKERAVCHH 736
Query: 299 TKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDG 358
++ A+A GLIS P G P R+ K++ +C H+A +F+S I +RE++ +D FHHFK+G
Sbjct: 737 SEKLAIAYGLISTPPGTPIRISKNLRVCTDCHTATKFISKITKREIIARDAHRFHHFKNG 796
Query: 359 KCSCKDAY 366
+CSC D +
Sbjct: 797 ECSCGDYW 804
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN +++ + + E H R+ D + +L++C P L G + A
Sbjct: 297 IAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHAR 356
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K GL+S GN LIN+ S+ G + DA F P+++ +SWT ++ + E+
Sbjct: 357 AAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVES 416
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
FK + N T+ LKA
Sbjct: 417 FTTFKQMLQQGVKANKITYMCVLKA 441
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 90/205 (43%), Gaps = 13/205 (6%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ IL++C +P +LN G + + + GL + VGN LI++ ++CG + DA F
Sbjct: 128 DKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVF 187
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ ++ +SWT + A G+ E+L + + T+ + L A + +
Sbjct: 188 DAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALE 247
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEA-----LGRAGMFEEVLEFIKGIVPGKLCPLIW 219
+ ++ HI SE H + V + G F++ E + + + + W
Sbjct: 248 KGKQIHA------HIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDV--IAW 299
Query: 220 RTLLLSSRVHGDMKLAKYALDKLLE 244
T++ G ++ A ++LE
Sbjct: 300 NTMIRGFVDSGQLEEAHGTFHRMLE 324
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+DSY +L SC+ L VG Q ++ + G+ + + N L+ + + CG +++A
Sbjct: 26 VDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQL 85
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
F K+ +SW +IS + G EA +LF Q + TF S L A
Sbjct: 86 FDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSA 138
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 67/162 (41%), Gaps = 10/162 (6%)
Query: 5 SLISDVEIPWNLLLKACIKA----KDYEMVHELL-ERIQLCCGFIDSYSICDILNSCLNP 59
++ S E+ W L A ++ + + H +L ER++ + ++L++C +
Sbjct: 189 AMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVR-----PSRITYMNVLSACGSL 243
Query: 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
L G Q A++ + S V L + +CG DA F+ ++ ++W +I
Sbjct: 244 AALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMI 303
Query: 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
V+ G EA F + + T+ + L A A G
Sbjct: 304 RGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPG 345
>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Glycine max]
Length = 1033
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 121/418 (28%), Positives = 205/418 (49%), Gaps = 71/418 (16%)
Query: 11 EIPWNLLLKACIKA----KDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
E+ WN ++ I K +V ++++ Q +D +++ +L++C + L G
Sbjct: 625 EVSWNAMISGYIHNGILHKAMGLVWLMMQKGQR----LDDFTLATVLSACASVATLERGM 680
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ A + L + VG+ L+++ ++CGKID A F+ P +N SW +IS HG
Sbjct: 681 EVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHG 740
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
H +AL LF + + TF L A + +GLV E + F SM EVY + P EH+
Sbjct: 741 HGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHF 800
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL-----LSSRVHGDMKLAKYALDK 241
S MV+ LGRAG +++ EFIK +P LIWRT+L +SR + +L + A
Sbjct: 801 SCMVDLLGRAGDVKKLEEFIK-TMPMNPNALIWRTILGACCRANSR---NTELGRRAAKM 856
Query: 242 LLELDPGMYV----------------------------------GC-WIEIQNKIYEFVS 266
L+EL+P V GC W+ +++ ++ FV+
Sbjct: 857 LIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAGCSWVTMKDGVHVFVA 916
Query: 267 NEELTSE---VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGL 308
++ E + DKL EI M++LG+V Y ++ A+A +
Sbjct: 917 GDQTHPEKEKIYDKLKEIMNKMRDLGYVPETKYALYDLELENKEELLSYHSEKLAIAF-V 975
Query: 309 ISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++ +P R+IK++ +CG H+A +++S I+ R+++++D FHHF G CSC+D +
Sbjct: 976 LTRQSELPIRIIKNLRVCGDCHTAFKYISNIVNRQIILRDSNRFHHFDGGICSCQDYW 1033
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Query: 45 DSYSICDILNSC--LNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC-GKIDDAD 101
+ Y+I L +C L P +L +G + ++K S + N L+++ S C IDDA
Sbjct: 139 NHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDAR 198
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN 146
F+ K S SW IIS G A LF Q T +N
Sbjct: 199 RVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELN 243
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 65 GTQAQAYMTKRGLIS-HPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G + AY+ + L+ +GN L+N+ ++C ID+A F+ P K+++SW IIS
Sbjct: 373 GQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLD 432
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFR--SALKAYALMGLV 163
++ EA+ F R M P+ F S L + A +G +
Sbjct: 433 HNERFEEAVACFHTM--RRNGMVPSKFSVISTLSSCASLGWI 472
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%)
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q + K GL S N L+NI R G + A F P+KN +SW+ ++S +G
Sbjct: 60 QLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNG 119
Query: 127 HPSEALDLFK 136
P EA LF+
Sbjct: 120 MPDEACMLFR 129
>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
Length = 874
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 112/407 (27%), Positives = 198/407 (48%), Gaps = 55/407 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL-LNVGTQAQA 70
+ W+ +L +A D E L ++ + + ++I ++++C P ++ G Q A
Sbjct: 467 VAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHA 526
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K V + L+++ SR G ID A + F+ +++ +SW +IS HG+ +
Sbjct: 527 ISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMK 586
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A++ F+ + M+ TF + + GLV E + F SM + I P+ EHY+ MV
Sbjct: 587 AIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMV 646
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ RAG +E + I+ + P ++WRTLL + RVH +++L K++ DKLL L+P
Sbjct: 647 DLYSRAGKLDETMSLIRDM-PFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDS 705
Query: 248 GMYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTS 272
YV GC WI+I+NK++ F++ ++ ++
Sbjct: 706 STYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSD 765
Query: 273 EVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGMPT 317
++ KL I +K+ G+ N S ++ A+A GLI+ P G P
Sbjct: 766 QIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPL 825
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+++K++ +CG H + +S I +RE++++D FHHF G CSC D
Sbjct: 826 QIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGD 872
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 105/234 (44%), Gaps = 4/234 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W LL C A+ + V L R++ + + ++ +L++ + L++G + A
Sbjct: 167 VTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQ 226
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G S V N L+N+ ++CG ++DA F ++ +SW +++ + EA
Sbjct: 227 SVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEA 286
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF-LSMEEVYHIEPSEEHYSIMV 190
L LF + + M +T+ + +K A + + A +L ++ +H+ + + +
Sbjct: 287 LQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHL--TGNVMTALA 344
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+A + G + L I + G + W ++ +GD+ LA ++ E
Sbjct: 345 DAYSKCGELADALN-IFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMRE 397
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTK----RGLISHPAVGNCLININSRCGKID 98
+DS ++ +L +C + +G Q K RG +S G L+++ +CG +
Sbjct: 96 LVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVS---AGTSLVDMYMKCGSVC 152
Query: 99 DADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+ F+ P+KN ++WT +++ + SE + LF + NP TF S L A A
Sbjct: 153 EGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVA 212
Query: 159 LMGLVGEAYRL 169
G + R+
Sbjct: 213 SQGALDLGQRV 223
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 96/237 (40%), Gaps = 18/237 (7%)
Query: 12 IPWNLLLKACIKAKDYEM-VHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN L+ A ++ + E+ +L + G + + ++ C N L + Q +
Sbjct: 268 VSWNTLM-AGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHS 326
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFK-STPEKNSLSWTFIISARVNHGHPS 129
+ K G V L + S+CG++ DA F +T +N +SWT IIS + +G
Sbjct: 327 CVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIP 386
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
A+ LF + N T+ + LKA + + I+ + +H +
Sbjct: 387 LAVVLFSRMREDRVMPNEFTYSAMLKA---------SLSILPPQIHAQVIKTNYQHIPFV 437
Query: 190 VEAL----GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
AL + G E+ L K I + + W +L GD + A Y +K+
Sbjct: 438 GTALLASYSKFGSTEDALSIFKMIEQKDV--VAWSAMLSCHAQAGDCEGATYLFNKM 492
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 6/169 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ CI+ D + L R++ + ++ +L + L+ +L AQ
Sbjct: 370 VSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLS--ILPPQIHAQVI 427
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
T I P VG L+ S+ G +DA FK +K+ ++W+ ++S G A
Sbjct: 428 KTNYQHI--PFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGA 485
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF--LSMEEVYH 178
LF + N T S + A A + R F +S++ YH
Sbjct: 486 TYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYH 534
>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 837
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 194/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W L+ + +E ++ +++ D + + IL++C LL G Q
Sbjct: 431 ISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLD 490
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K GL +V N L+ + ++CG +DDAD F S K+ ++WT II +G +
Sbjct: 491 FIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNS 550
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L + T + TF L A + GLV E + F M +VY I+P EHY+ M++
Sbjct: 551 LKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMID 610
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
GR+G +E + + + K +W++LL + RVH +++LA+ A L EL+P
Sbjct: 611 LFGRSGKLDEAKQLLDQM-DVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAM 669
Query: 248 ------GMYV------------------------GC-WIEIQNKIYEFVSNEE---LTSE 273
MY GC W+EI +++ F+S++ +E
Sbjct: 670 PYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAE 729
Query: 274 VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
+ K+ EI +KE G+V + S Y ++ AVA GL++ P P R
Sbjct: 730 IYTKIDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLAAPPSAPIR 789
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +CG HSA +++S + R ++++D FHHF++G+CSC D +
Sbjct: 790 IFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ Y+ IL +C + + G Q ++ K G S+ V + L+++ ++CG + +A
Sbjct: 264 NQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNML 323
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
++ + + +SW ++ V HG EAL LFK+ R ++ TF S L
Sbjct: 324 ETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVL 373
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSC----LNPI 60
++ D + WN L+ ++ E L + + ID Y+ +LN C +NP
Sbjct: 325 TMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINP- 383
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
+ K G ++ V N L+++ ++ G +D A F+ EK+ +SWT +++
Sbjct: 384 -----KSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVT 438
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
+ E+L +F D R T +NP F
Sbjct: 439 GYAQNNSHEESLKIFCDM--RVTGVNPDQF 466
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N L+N S+ G+++DA F P+K+ SW +IS+ VN G EA +LF + +
Sbjct: 69 NQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSI 128
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSME 174
S + Y G EA+ LF SM
Sbjct: 129 TW----SSIISGYCKFGCKVEAFDLFRSMR 154
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
+++ +L C + L+ G ++ K G + V L+++ ++C + +A+ FK
Sbjct: 163 FTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKG 222
Query: 107 T--PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
KN + WT +++ +G +A++ F+ + N TF + L A
Sbjct: 223 LEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTA 274
>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
Length = 874
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 112/407 (27%), Positives = 199/407 (48%), Gaps = 55/407 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL-LNVGTQAQA 70
+ W+ +L +A D E L ++ + + ++I ++++C P ++ G Q A
Sbjct: 467 VAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHA 526
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K V + L+++ SR G ID A + F+ +++ +SW +IS HG+ +
Sbjct: 527 ISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMK 586
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A++ F+ + M+ TF + + GLV E + F SM + I P+ EHY+ MV
Sbjct: 587 AIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMV 646
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ RAG +E + I+ + P ++WRTLL + RVH +++L K++ DKLL L+P
Sbjct: 647 DLYSRAGKLDETMSLIRDM-PFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDS 705
Query: 248 GMYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTS 272
YV GC WI+I+NK++ F++ ++ ++
Sbjct: 706 STYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSD 765
Query: 273 EVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPT 317
++ KL I +K+ G+ N S + ++ A+A GLI+ P G P
Sbjct: 766 QIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPL 825
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+++K++ +CG H + +S I +RE++++D FHHF G CSC D
Sbjct: 826 QIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGD 872
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 105/234 (44%), Gaps = 4/234 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W LL C A+ + V L R++ + + ++ +L++ + L++G + A
Sbjct: 167 VTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQ 226
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G S V N L+N+ ++CG ++DA F ++ +SW +++ + EA
Sbjct: 227 SVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEA 286
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF-LSMEEVYHIEPSEEHYSIMV 190
L LF + + M +T+ + +K A + + A +L ++ +H+ + + +
Sbjct: 287 LQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHL--TGNVMTALA 344
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+A + G + L I + G + W ++ +GD+ LA ++ E
Sbjct: 345 DAYSKCGELADALN-IFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMRE 397
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 10/148 (6%)
Query: 29 MVHELLERIQLC---CGFIDSYSICDILNSCLNPILLNVGTQAQAYMTK----RGLISHP 81
MV E+L++ + +DS ++ +L +C + +G Q K RG +S
Sbjct: 79 MVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVS-- 136
Query: 82 AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWR 141
G L+++ +CG + + F+ P+KN ++WT +++ + SE + LF +
Sbjct: 137 -AGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAE 195
Query: 142 YTSMNPTTFRSALKAYALMGLVGEAYRL 169
NP TF S L A A G + R+
Sbjct: 196 GIWPNPFTFASVLSAVASQGALDLGQRV 223
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 10/233 (4%)
Query: 12 IPWNLLLKACIKAKDYEM-VHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN L+ A ++ + E+ +L + G + + ++ C N L + Q +
Sbjct: 268 VSWNTLM-AGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHS 326
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFK-STPEKNSLSWTFIISARVNHGHPS 129
+ K G V L + S+CG++ DA F +T +N +SWT IIS + +G
Sbjct: 327 CVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIP 386
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
A+ LF + N T+ + LKA +L L + + + Y PS + +
Sbjct: 387 LAVVLFSRMREDRVMPNEFTYSAMLKA-SLSILPPQIHAQVIKTN--YQHIPSVG--TAL 441
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
+ + + G E+ L K I + + W +L GD + A Y +K+
Sbjct: 442 LASYSKFGSTEDALSIFKMIEQKDV--VAWSAMLSCHAQAGDCEGATYLFNKM 492
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 6/169 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ CI+ D + L R++ + ++ +L + L+ + Q A
Sbjct: 370 VSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSIL----PPQIHAQ 425
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K P+VG L+ S+ G +DA FK +K+ ++W+ ++S G A
Sbjct: 426 VIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGA 485
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF--LSMEEVYH 178
LF + N T S + A A + R F +S++ YH
Sbjct: 486 TYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYH 534
>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 193/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W +++ + E +L +++L + Y+ + +C L G Q A
Sbjct: 391 LTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQ 450
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G S +VGN +I + +RCG ++ A F + P + +SW +I+A HGH +A
Sbjct: 451 IVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKA 510
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
++L++ + TF + L A + GLV E R F SM E Y I P E+HY+ M++
Sbjct: 511 IELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMID 570
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
RAG F + I + P + IW LL R HG+M L A +KL +L P G
Sbjct: 571 LFCRAGKFSDAKNVIDSM-PFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDG 629
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEELTSEV-- 274
YV C W E++NK++ F+ ++ + EV
Sbjct: 630 TYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLS 689
Query: 275 -SDKLAEIEENMKELGFVLNRSLYQTKMK---------------AVALGLISFPHGMPTR 318
+ L ++ MK++G++ + M+ AVA GL+ P G R
Sbjct: 690 IYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEYALSTHSEKLAVAFGLMKLPQGATVR 749
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V K++ +CG H+A +FMS ++ RE+VV+D FHHFK+G+CSC++ +
Sbjct: 750 VFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGECSCRNYW 797
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 101/256 (39%), Gaps = 42/256 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + +E L +++L +D + ++++C + +G Q AY
Sbjct: 255 IAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAY 314
Query: 72 MTKRGLISHP------AVGNCLININSRCGKID--------------------------- 98
+ K L +P +VGN LI + + GK+D
Sbjct: 315 ILKNEL--NPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNA 372
Query: 99 ----DADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
+A F PEKN L+WT +IS +G +AL LF + N F A+
Sbjct: 373 GRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAI 432
Query: 155 KAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL 214
A +++G + +L + + H + + + M+ R G+ E + +
Sbjct: 433 TACSVLGALENGRQLHAQIVHLGH-DSTLSVGNAMITMYARCGIVEAARTMF--LTMPFV 489
Query: 215 CPLIWRTLLLSSRVHG 230
P+ W +++ + HG
Sbjct: 490 DPVSWNSMIAALGQHG 505
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 14/142 (9%)
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCG---------KIDDADLAFKSTPEKNSLSWTF 117
Q + K G+ PAV N L+++ +C + A F P++N WT
Sbjct: 169 QMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTT 228
Query: 118 IISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVY 177
+I+ V +G + A ++ T + + + Y GL +A LF M +
Sbjct: 229 LITGYVRNGDLTGAREILDT----MTEQPGIAWNAMISGYLHHGLFEDALTLFRKM-RLL 283
Query: 178 HIEPSEEHYSIMVEALGRAGMF 199
++ E Y+ ++ A G F
Sbjct: 284 GVQVDESTYTSVISACADGGFF 305
>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
Length = 639
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 116/413 (28%), Positives = 201/413 (48%), Gaps = 66/413 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ ++ D EL R++ + ++ +L +C ++L G Q A+
Sbjct: 235 VVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAH 294
Query: 72 MTK--RGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ K R LI H N L+++ +CG ++DAD F P+++ +SW+ ++S +G
Sbjct: 295 VLKYDRDLILH----NALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSV 350
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
EAL +F + + + N T L A + GLV + + F SM+ ++ I+P EH++ M
Sbjct: 351 EALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCM 410
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
V+ LGRAG +E +EFI G+ L P +IWRTLL + R+H + LA YA ++L+L+P
Sbjct: 411 VDLLGRAGKLDEAVEFIHGM---SLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLEP 467
Query: 248 ---GMYV--------------------------------GCWIEIQNKIYEFVSNEELTS 272
G V WIE++ +++ F++ +L+
Sbjct: 468 DDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFIAG-DLSH 526
Query: 273 EVSD----KLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPH 313
SD +L + +K LG+V Y ++ A+ G +
Sbjct: 527 PCSDTIIQELNRLIGRIKSLGYVPQTEFVLQDLPTEQKEDLLKYHSEKMAIVFGTMHAVD 586
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G P R++K++ +CG H+ + +S R +V++DP FHHF+DG CSC D +
Sbjct: 587 GKPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSCGDYW 639
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVG-----NCLININSRCGKIDD 99
D S+ ++ C+ + G ++ G + H G N L ++ ++ G +DD
Sbjct: 63 DPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDD 122
Query: 100 ADLAFKSTPEKNSLSWTFIISARVN-HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
A F P +N ++WT +++A + G EAL + + N TF S L A
Sbjct: 123 ALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACT 182
Query: 159 LMGLV 163
G++
Sbjct: 183 TPGML 187
>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Glycine max]
Length = 782
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 190/387 (49%), Gaps = 61/387 (15%)
Query: 34 LERIQLC-CGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININS 92
LE ++ C + + + C +L S L+ G Q + + + G S +VGN LI + S
Sbjct: 403 LEGLEPCDYAYAGAIASCSVLGS------LDNGQQLHSQIIQLGHDSSLSVGNALITMYS 456
Query: 93 RCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRS 152
RCG ++ AD F + P +S+SW +I+A HGH +A+ L++ + TF +
Sbjct: 457 RCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLT 516
Query: 153 ALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPG 212
L A + GLV E F +M Y I P E+HYS +++ L RAGMF E + + P
Sbjct: 517 ILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESM-PF 575
Query: 213 KLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMYV------------------ 251
+ IW LL +HG+M+L A D+LLEL P G Y+
Sbjct: 576 EPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARV 635
Query: 252 -------------GC-WIEIQNKIYEFVSNEELTSEVS---DKLAEIEENMKELGFVLNR 294
GC WIE++N ++ F+ ++ + EV L ++ M++LG+V +
Sbjct: 636 RKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPDT 695
Query: 295 SLYQTKMK---------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTI 339
M+ AV G++ P G RV K++ +CG H+A +++S +
Sbjct: 696 KFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKV 755
Query: 340 IERELVVKDPGSFHHFKDGKCSCKDAY 366
++RE++V+D FHHF++G+CSC + +
Sbjct: 756 VDREIIVRDRKRFHHFRNGECSCSNYW 782
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 13/191 (6%)
Query: 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILL 62
L + + + WN ++ + YE +LL R+ +D Y+ ++++ N L
Sbjct: 231 LEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLF 290
Query: 63 NVGTQAQAYMTKRGLISHPA------VGNCLININSRCGKIDDADLAFKSTPEKNSLSWT 116
N+G Q AY+ + + P+ V N LI + +RCGK+ +A F P K+ +SW
Sbjct: 291 NIGRQVHAYVLRT--VVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWN 348
Query: 117 FIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEV 176
I+S VN EA +F++ R + T+ + A G E +LF M ++
Sbjct: 349 AILSGCVNARRIEEANSIFREMPVR----SLLTWTVMISGLAQNGFGEEGLKLFNQM-KL 403
Query: 177 YHIEPSEEHYS 187
+EP + Y+
Sbjct: 404 EGLEPCDYAYA 414
>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 114/359 (31%), Positives = 173/359 (48%), Gaps = 56/359 (15%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G + + K L V CLI++ +CG+++DA F P++ S+ W IIS+
Sbjct: 468 LQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISS 527
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
HGH +AL LFKD + + TF S L A + GLV EA F +M++ Y I+P
Sbjct: 528 LGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKP 587
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
+ +HY MV+ GRAG E+ + + P + IW TLL + R+HG+ +L +A D+
Sbjct: 588 NLKHYGCMVDLFGRAGYLEKAYNLVSNM-PIQADASIWGTLLAACRIHGNAELGTFASDR 646
Query: 242 LLELDP---GMY---------VGCWIEIQNKIYEFVSNEELT------------------ 271
LLE+D G Y VG W E K+ + L
Sbjct: 647 LLEVDSENVGYYVLLSNIYANVGKW-EGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFY 705
Query: 272 ---------SEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALG 307
+E+ ++L + MK LG+V + S ++ A+ G
Sbjct: 706 AGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVEEDEKEEILTSHSERLAIVFG 765
Query: 308 LISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+IS P P R+ K++ +CG H+A +++S I ERE++V+D FHHFKDG CSC D +
Sbjct: 766 IISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGICSCGDYW 824
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ + + +L+R++ +D+ ++ +L C + G Y+
Sbjct: 216 WNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVI 275
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K GL S V N LIN+ S+ G++ DA F ++ +SW II+A + P AL
Sbjct: 276 KHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALG 335
Query: 134 LFKD 137
FK+
Sbjct: 336 FFKE 339
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 23/178 (12%)
Query: 64 VGTQAQAYMTK-RGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
+G ++ + R L +GN L+N+ ++ G ID A F+ P ++ +SW +I+
Sbjct: 367 IGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGY 426
Query: 123 VNHGHPSEALDLFK-DKQWRYTSMNPTTFRSALKAYALMGLVGEAYR---------LFLS 172
+G SEA+D + ++ R N T+ S L AY+ +G + + + LFL
Sbjct: 427 AQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLD 486
Query: 173 MEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
+ + +++ G+ G E+ + I P W ++ S +HG
Sbjct: 487 VFVA----------TCLIDMYGKCGRLEDAMSLFYEIPQETSVP--WNAIISSLGIHG 532
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 4/142 (2%)
Query: 14 WNLLLKACIKAKDY-EMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN ++ A ++ Y + + + E + L D Y+ +L +CL+ L G + ++
Sbjct: 117 WNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLS---LADGEKMHCWV 173
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K G V LI++ SR G ++ A F P ++ SW +IS +G+ +EAL
Sbjct: 174 LKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEAL 233
Query: 133 DLFKDKQWRYTSMNPTTFRSAL 154
+ + M+ T S L
Sbjct: 234 RVLDRMKTEEVKMDTVTVSSML 255
>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
Length = 631
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/374 (30%), Positives = 183/374 (48%), Gaps = 55/374 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+ Y + ++++ L G A K + VG+ L+++ +CG I+D +
Sbjct: 258 LTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIEDCEQV 317
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F PE+N +SW +IS + G A+ LF++ Q + N T L A + G V
Sbjct: 318 FHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAVA-NYVTLICVLSACSRGGAV 376
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+F SM + Y IEP EHY+ + + LGRAGM E EF++ + P + +W LL
Sbjct: 377 KLGNEIFESMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKM-PIRPTISVWGALL 435
Query: 224 LSSRVHGDMKLAKYALDKLLELDP---GMYV----------------------------- 251
+ RV+G+ +L K A D L +LDP G +V
Sbjct: 436 NACRVYGEPELGKIAADNLFKLDPKDSGNHVLLSNMFAAAGRWDEATLVRKEMKDVGIKK 495
Query: 252 --GC-WIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFV--LNRSLY----QT 299
GC W+ +NK++ F + + E SE+ L ++ M+ G++ N +LY +
Sbjct: 496 GAGCSWVTAKNKVHVFQAKDTSHERNSEIQAMLVKLRTEMQAAGYMPDTNYALYDLEEEE 555
Query: 300 KMK---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
KM A+A GLI+ P G+P R+ K++ +CG HSA +F+S I+ RE++V+D
Sbjct: 556 KMTEVGYHSEKIALAFGLIALPPGVPIRITKNLRICGDCHSAFKFISGIVGREIIVRDNN 615
Query: 351 SFHHFKDGKCSCKD 364
FH F+D +CSC+D
Sbjct: 616 RFHRFRDSQCSCRD 629
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/301 (19%), Positives = 124/301 (41%), Gaps = 18/301 (5%)
Query: 14 WNLLL-KACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN + A + + + + + +E + G D + C LN+C + L++G Q +
Sbjct: 127 WNAYISNAVLDGRPGKAIDKFIE-FRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLV 185
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
+ G +V N +I++ +C +++ A++ F +NS+SW +++A + +A
Sbjct: 186 IRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKAC 245
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVG-EAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+F + + S + AYA G+ G E R ++ +E S +V+
Sbjct: 246 VVFLMGRKEGIELTDYMVSSVISAYA--GISGLEFGRSVHALAVKACVEGDIFVGSALVD 303
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYV 251
G+ G E+ + + L + W ++ GD+ +A +++ YV
Sbjct: 304 MYGKCGSIEDCEQVFHEMPERNL--VSWNAMISGYAHQGDVDMAMTLFEEMQSEAVANYV 361
Query: 252 -----------GCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTK 300
G +++ N+I+E + + ++ A I + + G V + K
Sbjct: 362 TLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQK 421
Query: 301 M 301
M
Sbjct: 422 M 422
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 41 CGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDA 100
C F S ++C L G Q A K G I+ VG ++ S+ G +A
Sbjct: 63 CAFKASTALC----------LPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEA 112
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
F P +N W IS V G P +A+D F
Sbjct: 113 QRLFDEMPPRNVAVWNAYISNAVLDGRPGKAIDKF 147
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 184/381 (48%), Gaps = 65/381 (17%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ +L++C L +G +A YM K GL + N L+++ ++CG I +A F
Sbjct: 106 DGFTMVSLLSACAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIF 165
Query: 105 KSTP-EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
E+N +SWT +I +G EAL+ FKD + + TF L A + G+V
Sbjct: 166 DEMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIV 225
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E + F M+E Y I P EHY MV+ LGRAG+ +E ++I+ + P + +IWRTLL
Sbjct: 226 NEGFEYFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDM-PLQPNAVIWRTLL 284
Query: 224 LSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW----------------- 254
+ +HG + L +A +LL+L+P G YV W
Sbjct: 285 GACTIHGHLGLGAFARARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRK 344
Query: 255 ------IEIQNKIYEFVSNEELTSE-----------------------VSDKLAEIEENM 285
+E+ N ++EFV + + ++ LA+IEE
Sbjct: 345 TPGYSLVELGNHVHEFVMGDRTHPQSEAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEE 404
Query: 286 KELGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELV 345
KE Y ++ A+A LI+ G P R+IK++ +C H A + +S + ER++V
Sbjct: 405 KESAL-----FYHSEKIAIAFMLINTLPGTPIRIIKNLRVCADCHFAIKLISKVFERDIV 459
Query: 346 VKDPGSFHHFKDGKCSCKDAY 366
V+D FHHF+DG CSC+D +
Sbjct: 460 VRDCSRFHHFRDGSCSCRDYW 480
>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
1
gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 684
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/410 (29%), Positives = 192/410 (46%), Gaps = 56/410 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ A ++ + E L R + + I +L++C L +G A+
Sbjct: 276 VSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAH 335
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + VG+ L+++ +CG I+D++ AF PEKN ++ +I + G A
Sbjct: 336 AVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMA 395
Query: 132 LDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
L LF++ R P TF S L A + G V ++F SM Y IEP EHYS +
Sbjct: 396 LALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCI 455
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
V+ LGRAGM E EFIK + P + +W L + R+HG +L A + L +LDP
Sbjct: 456 VDMLGRAGMVERAYEFIKKM-PIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKD 514
Query: 248 ------------------------------GMYVGC---WIEIQNKIYEFVSNEE---LT 271
G+ G WI ++N+++ F + + L
Sbjct: 515 SGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILN 574
Query: 272 SEVSDKLAEIEENMKELGFV--LNRSLY-------------QTKMKAVALGLISFPHGMP 316
E+ LA++ M+ G+ L SLY ++ A+A GL+S P +P
Sbjct: 575 KEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVP 634
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+ K++ +CG HS +F+S ++RE++V+D FH FKDG CSCKD +
Sbjct: 635 IRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 12/160 (7%)
Query: 11 EIP------WNLLLKACI-KAKDYEMVHELLE--RIQLCCGFIDSYSICDILNSCLNPIL 61
EIP WN + + + E + +E RI G +S + C LN+C + +
Sbjct: 168 EIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRID---GHPNSITFCAFLNACSDWLH 224
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
LN+G Q + + G + +V N LI+ +C +I +++ F KN++SW +++A
Sbjct: 225 LNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAA 284
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
V + +A L+ + + S L A A M
Sbjct: 285 YVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMA 324
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%)
Query: 81 PAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQW 140
P + N LIN+ S+ + A L + TP +N +SWT +IS +GH S AL F + +
Sbjct: 42 PFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRR 101
Query: 141 RYTSMNPTTFRSALKAYALMGL 162
N TF A KA A + L
Sbjct: 102 EGVVPNDFTFPCAFKAVASLRL 123
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 39/93 (41%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G Q A K G I VG ++ + DDA F PE+N +W IS V
Sbjct: 126 TGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSV 185
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
G P EA++ F + + N TF + L A
Sbjct: 186 TDGRPREAIEAFIEFRRIDGHPNSITFCAFLNA 218
>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
Length = 634
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/410 (29%), Positives = 192/410 (46%), Gaps = 56/410 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ A ++ + E L R + + I +L++C L +G A+
Sbjct: 226 VSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAH 285
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + VG+ L+++ +CG I+D++ AF PEKN ++ +I + G A
Sbjct: 286 AVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMA 345
Query: 132 LDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
L LF++ R P TF S L A + G V ++F SM Y IEP EHYS +
Sbjct: 346 LALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCI 405
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
V+ LGRAGM E EFIK + P + +W L + R+HG +L A + L +LDP
Sbjct: 406 VDMLGRAGMVERAYEFIKKM-PIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKD 464
Query: 248 ------------------------------GMYVGC---WIEIQNKIYEFVSNEE---LT 271
G+ G WI ++N+++ F + + L
Sbjct: 465 SGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILN 524
Query: 272 SEVSDKLAEIEENMKELGFV--LNRSLY-------------QTKMKAVALGLISFPHGMP 316
E+ LA++ M+ G+ L SLY ++ A+A GL+S P +P
Sbjct: 525 KEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVP 584
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+ K++ +CG HS +F+S ++RE++V+D FH FKDG CSCKD +
Sbjct: 585 IRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 634
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 12/160 (7%)
Query: 11 EIP------WNLLLKACI-KAKDYEMVHELLE--RIQLCCGFIDSYSICDILNSCLNPIL 61
EIP WN + + + E + +E RI G +S + C LN+C + +
Sbjct: 118 EIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRID---GHPNSITFCAFLNACSDWLH 174
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
LN+G Q + + G + +V N LI+ +C +I +++ F KN++SW +++A
Sbjct: 175 LNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAA 234
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
V + +A L+ + + S L A A M
Sbjct: 235 YVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMA 274
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 39/93 (41%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G Q A K G I VG ++ + DDA F PE+N +W IS V
Sbjct: 76 TGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSV 135
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
G P EA++ F + + N TF + L A
Sbjct: 136 TDGRPREAIEAFIEFRRIDGHPNSITFCAFLNA 168
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 98 DDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAY 157
+ A L + TP +N +SWT +IS +GH S AL F + + N TF A KA
Sbjct: 9 ESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAV 68
Query: 158 ALMGL 162
A + L
Sbjct: 69 ASLRL 73
>gi|302802241|ref|XP_002982876.1| hypothetical protein SELMODRAFT_117311 [Selaginella moellendorffii]
gi|300149466|gb|EFJ16121.1| hypothetical protein SELMODRAFT_117311 [Selaginella moellendorffii]
Length = 923
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/368 (29%), Positives = 172/368 (46%), Gaps = 53/368 (14%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+LN+C N + QA +++ G + V N L+ +CG +++ F+ KN
Sbjct: 556 VLNACGNLASIPAAKLVQACLSETGFFGNVEVANGLLCTLGKCGSLEEVANFFQVMAVKN 615
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
+SW I+A HG+ ++LF+ Q T L + + GLV + Y FL
Sbjct: 616 QVSWNTAIAANAQHGNGVRGVELFQTMQLEGIDTGSVTLIGVLSSCSHAGLVAQGYSYFL 675
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231
+M Y EHYS +++ L RAG E EF+K + G W TLL ++HGD
Sbjct: 676 NMHVDYGFPAEAEHYSCVIDLLSRAGWLEHAEEFVKRLPFGDQSVFPWITLLCGCKLHGD 735
Query: 232 MKLAKYALDKLLELDPG----------MYVGC-------------------------WIE 256
++ A ++L L+PG +Y G WIE
Sbjct: 736 LERGGRATQRILGLNPGSTGPYLVMHNLYAGAGKWPEAAAVRKSMVELGPKKEPGLSWIE 795
Query: 257 IQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGFV--LNRSLYQTKMK--------- 302
++ +I+EF ++ +SE+ +L + E MK GFV + +Y + K
Sbjct: 796 VKGRIHEFRVGDTSHPRSSEIHRELERLNEEMKRAGFVCDIKAVVYDLQAKEKESLLCQH 855
Query: 303 ----AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDG 358
A+A GLIS G P R++K++ +C HSA +F+S ++ RE+VV+D FHHF+ G
Sbjct: 856 SEKLAIAFGLISTAAGEPLRIMKNLRVCSDCHSATKFISGLVGREIVVRDAYRFHHFRGG 915
Query: 359 KCSCKDAY 366
CSC+D +
Sbjct: 916 ACSCEDFW 923
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 3/218 (1%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN +L ++ + +E + + L ID+ S+ + N+C + L G + +T
Sbjct: 417 WNTVLSLYVENEQFEEAFTIFRLMLLGGVTIDTVSLMTVFNACGSSASLEKGKWIHSLLT 476
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ L V N L+ + +R G ++DA F + +N +SWT ++ G EAL
Sbjct: 477 ESELTRKTPVQNALVTMYARLGSLEDAREIFDAMTTRNVISWTAMVGVHSQLGLNREALR 536
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
+F+ + N TF + L A + + A + + E E ++ L
Sbjct: 537 IFRSILLEGVAPNEVTFTAVLNACGNLASIPAAKLVQACLSETGFFGNVEVANGLLC-TL 595
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231
G+ G EEV F + V + W T + ++ HG+
Sbjct: 596 GKCGSLEEVANFFQ--VMAVKNQVSWNTAIAANAQHGN 631
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%)
Query: 42 GFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD 101
G D+ + +++ C L G + + + G+ +G L+ + +CG ++A
Sbjct: 36 GSADASTFAALIHKCARLHDLAQGRRIHGLILRNGIEVGDFLGARLLAMYCKCGSPEEAR 95
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
F+ +K+ ++WT +I GHP EA LF++ Q + N T+ + L A
Sbjct: 96 AVFQGIQDKSVVAWTSLIGVNARSGHPKEAFHLFREMQLQGVMPNDVTYVAVLGA 150
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
L+ D + WN ++ + + + EL +++L + + LN+C + +
Sbjct: 201 LVRDAAV-WNAMISLLVAHEQGDEALELFRQMRLGGVTPNKGTCVAALNACCHSRDFSEA 259
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ A+ + + V L+N+ + GK+DDA+ F+ E++ +SW +++A +
Sbjct: 260 LRIHAFARELAGDADTVVQTALVNMYGKFGKVDDAEEIFERIQERDVVSWNAMLTANACN 319
Query: 126 GHPSEALDLFKD 137
G +A F++
Sbjct: 320 GFHDKAFKCFRE 331
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 4/198 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ ++ + L +QL + + +L +C +P V T
Sbjct: 107 VAWTSLIGVNARSGHPKEAFHLFREMQLQGVMPNDVTYVAVLGACGHP--WEVDTIRARV 164
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
L V ++N +CG +D A F +++ W +IS V H EA
Sbjct: 165 EACGSLELDVIVATAVMNAYGKCGDLDSAWGVFDGILVRDAAVWNAMISLLVAHEQGDEA 224
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI--M 189
L+LF+ + + N T +AL A EA R+ E+ + ++ M
Sbjct: 225 LELFRQMRLGGVTPNKGTCVAALNACCHSRDFSEALRIHAFARELAGDADTVVQTALVNM 284
Query: 190 VEALGRAGMFEEVLEFIK 207
G+ EE+ E I+
Sbjct: 285 YGKFGKVDDAEEIFERIQ 302
>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 596
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 183/374 (48%), Gaps = 55/374 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++I +L +C L +G + + +K GL+ + VGN LI++ ++CG ++DA F
Sbjct: 222 DGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVF 281
Query: 105 KSTP-EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
+ + +SWT +I +G +AL+LF + T L A + GLV
Sbjct: 282 EEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLV 341
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ +R F M++ Y I P EH MV+ LGRAG EE +I +P + ++WRTLL
Sbjct: 342 DDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYIT-TMPVEPNAVVWRTLL 400
Query: 224 LSSRVHGDMKLAKYALDKLLELDPG----------MY--VGCW----------------- 254
+ +H ++L + A +L+ELDPG +Y VG W
Sbjct: 401 GACAMHKKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRK 460
Query: 255 ------IEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVLNRS---------- 295
+E++N +YEFV + + ++ LAEI E ++ G+V S
Sbjct: 461 NPGHSLVELRNSVYEFVMGDRSHPESDQIYQTLAEIAERLRCQGYVPRTSNVLADIEEEE 520
Query: 296 -----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
Y ++ A+A L+ G P R++K++ MCG H + +S + +RE++V+D
Sbjct: 521 KETALNYHSERLAIAFALLKSLPGSPIRIVKNLRMCGDCHLVIKLISKVYDREIIVRDRS 580
Query: 351 SFHHFKDGKCSCKD 364
FHHFK G+CSCKD
Sbjct: 581 RFHHFKGGECSCKD 594
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+++ +L +C + L G A K GL++ V N L++ CG + A F
Sbjct: 119 DTHTYPPLLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVF 178
Query: 105 KSTP--EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
P E+N +SW +++ +G P+E L +F++ + T S L A A +G
Sbjct: 179 DEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGA 238
Query: 163 VGEAYRLFLSMEEV 176
+ R+ + +V
Sbjct: 239 LTLGRRVHVFASKV 252
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 193/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W +L A + E +L + + C +++ + +L++C + L G Q +
Sbjct: 418 VSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSR 477
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G VGN L+ + +CG +++A AF+ E++ +SW +I+ HG EA
Sbjct: 478 LIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEA 537
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L++F + T + T L A + GLV + F SM + + EHY+ M++
Sbjct: 538 LEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMID 597
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG +E + +K + P + +W LL +SR+H + +L + A +K+ EL+P G
Sbjct: 598 LLGRAGRLDEAVNLMKDM-PFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAG 656
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEELTSEVSD 276
MYV WIE+QNK++ F + + E D
Sbjct: 657 MYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPERED 716
Query: 277 KLAEIEE---NMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
A +E+ MK+ G+V + Y ++ AVA G++ P G P R
Sbjct: 717 IYAFLEDLDIRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILKIPPGRPIR 776
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
VIK++ +C H+A + +S I R ++++D FHHF+DG CSC D +
Sbjct: 777 VIKNLRVCRDCHTAFKCISAIEGRLIILRDSNRFHHFRDGSCSCGDYW 824
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
+++ ++ G +++A F + P+KN++SW +++A V EA +LF R
Sbjct: 328 TAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCR--- 384
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
N ++ + L YA G++ EA +F M + + ++ M+ A + G EE L+
Sbjct: 385 -NVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVS-----WAAMLAAYSQIGFSEETLQ 438
Query: 205 FIK 207
K
Sbjct: 439 LFK 441
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 11/158 (6%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I+ ++ G + A F PEK+++SW +++A V +G EA +LF + T
Sbjct: 204 NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSR----TE 259
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
+ ++ + + Y + EA ++F M + + ++ MV R G E
Sbjct: 260 WDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVS-----WNTMVSGYARRGDMAEARR 314
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
+ P + W ++ +G ++ AK D +
Sbjct: 315 LFD-VAPIRDV-FTWTAIVSGYAQNGMLEEAKRVFDAM 350
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 11/139 (7%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N L+ + +I++A F P+++ +SW ++S G +EA LF R
Sbjct: 266 NALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIR--- 322
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
+ T+ + + YA G++ EA R+F +M + + ++ M+ A + M EE E
Sbjct: 323 -DVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVS-----WNAMMAAYVQRRMMEEAKE 376
Query: 205 FIKGIVPGKLCPLIWRTLL 223
+ + W T+L
Sbjct: 377 LFDAMPCRNVAS--WNTML 393
>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
Length = 613
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 113/375 (30%), Positives = 183/375 (48%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
++ ++ +L C N L G Q + K L + VG L+++ +CG + A + F
Sbjct: 240 NASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILF 299
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++ ++W +IS HG EA++LF+ + N TF L A GL
Sbjct: 300 GEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCD 359
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ F M+E+Y IEP +HYS MV+ L RAG E ++FI+ + P + P + TLL
Sbjct: 360 FGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSM-PFEPHPSAYGTLLA 418
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYVG----------------------------- 252
+ RV+ +++ A+ A KL+E DP G YV
Sbjct: 419 ACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTVVKT 478
Query: 253 ---CWIEIQNKIYEFVSNEELTSE---VSDKLAEIEENMKELGFV--------------- 291
WIEI+ ++EF SN+ L + + +KL ++ E MKE+G+V
Sbjct: 479 PGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGYVPDLDFVLHDVDETMK 538
Query: 292 LNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ + ++ A+A GLIS HGM R+ K++ +CG H+A + +S I +RE++++D
Sbjct: 539 VQMLMRHSEKLAIAFGLISTAHGMTLRIFKNLRVCGDCHNAAKVISMIEDREIILRDTTR 598
Query: 352 FHHFKDGKCSCKDAY 366
FHHF+ G CSC D +
Sbjct: 599 FHHFRGGHCSCDDYW 613
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 122/410 (29%), Positives = 196/410 (47%), Gaps = 58/410 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ +A L +QL + ++ +L++C L G +Y
Sbjct: 287 VAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSY 346
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ ++ L +G L++ ++CG IDDA AF+S P KNS +WT +I +G EA
Sbjct: 347 IRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREA 406
Query: 132 LDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
L+LF R S+ PT TF L A + LV E R F SM + Y I+P EHY +
Sbjct: 407 LELF--SSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCV 464
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
V+ LGRAG+ +E +FI+ +P + +IWR LL S VH ++++ + AL +++ L+P
Sbjct: 465 VDLLGRAGLIDEAYQFIR-TMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSH 523
Query: 248 -GMY---------VGCW-----------------------IEIQNKIYEFV---SNEELT 271
G Y VG W IE+ + EF S+
Sbjct: 524 SGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHPQL 583
Query: 272 SEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMP 316
E+ K+ E+ + +K G++ N + + ++ A+A GL+ G
Sbjct: 584 KEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHHSEKLAIAFGLMKLDPGAT 643
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+ K++ +C HSA + +S + RE+VV+D FHHFKDG CSC D +
Sbjct: 644 IRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGTCSCNDYW 693
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
Query: 14 WNLLLKACIKAKDYE-MVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
+N+L++A + A E +H +E + + D +++ L SC L+VG QAY
Sbjct: 86 YNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYA 145
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
KRGL++ V + LI++ + C + A L F + E + W II+A + +G+ E +
Sbjct: 146 VKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVV 205
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
++FK + + T S + A G +G+A
Sbjct: 206 EMFKGMLEVGVAFDEITLVSVVTA---CGRIGDA 236
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 69/148 (46%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ A +K ++ V E+ + + D ++ ++ +C +G Y+
Sbjct: 188 WNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVD 247
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
++GL+ + + LI++ ++CG++ A F ++ ++W+ +IS EAL
Sbjct: 248 EKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALA 307
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMG 161
LF + Q N T S L A A++G
Sbjct: 308 LFSEMQLAEVEPNDVTMVSVLSACAVLG 335
>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/381 (31%), Positives = 182/381 (47%), Gaps = 59/381 (15%)
Query: 44 IDSYSICDI-----LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKID 98
+D + CD L +C L G Q A + G S +VGN +I++ ++CG ++
Sbjct: 418 LDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVE 477
Query: 99 DADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
A+ F + P + +SW +I+A HGH +A++LF + TF + L A +
Sbjct: 478 AAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACS 537
Query: 159 LMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLI 218
GLV + F SM E Y I P E+HY+ MV+ RAGMF I + P K +
Sbjct: 538 HAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSM-PSKPGAPV 596
Query: 219 WRTLLLSSRVHGDMKLAKYALDKLLELDP---GMYV------------------------ 251
W LL R+HG+M L A ++L +L P G YV
Sbjct: 597 WEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRD 656
Query: 252 -------GC-WIEIQNKIYEFVSNEELTSEVSDKLAEIEE---NMKELG------FVLNR 294
C WIE++NK++ F+ ++++ EV +E+ MK+LG FVL+
Sbjct: 657 QAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHD 716
Query: 295 SLYQTKMK---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELV 345
Y+ K AV G++ P RV K++ +CG H+A +FMS + RE++
Sbjct: 717 MEYEQKEHALSTHSEKLAVGFGIMKLPPDATVRVFKNIRICGDCHNAFKFMSKVARREII 776
Query: 346 VKDPGSFHHFKDGKCSCKDAY 366
V+D FHHFK+G CSC+D +
Sbjct: 777 VRDRKRFHHFKNGDCSCRDYW 797
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 9/200 (4%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
+++ ++ WN ++ + ++ L +++ D + I+++C N +
Sbjct: 248 AMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQM 307
Query: 65 GTQAQAYMTKRGLISHPA----VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
G Q AY+ K L + + V N LI + + K+D+A F + P +N ++W I+S
Sbjct: 308 GKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILS 367
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
VN G EA F++ + N T + A G E +LF M + E
Sbjct: 368 GYVNAGRMEEAKSFFEEMPVK----NLLTLTVMISGLAQNGFGDEGLKLFKQM-RLDGFE 422
Query: 181 PSEEHYSIMVEALGRAGMFE 200
P + ++ + A G E
Sbjct: 423 PCDFAFAGALTACSVLGALE 442
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 122/408 (29%), Positives = 194/408 (47%), Gaps = 58/408 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ +A L +QL + ++ +L++C L G +Y
Sbjct: 288 VAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSY 347
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ ++ L +G L++ ++CG IDDA AF+S P KNS +WT +I +G EA
Sbjct: 348 VRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREA 407
Query: 132 LDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
L+LF R + PT TF L A + LV E R F SM Y I+P EHY M
Sbjct: 408 LELFS--SMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCM 465
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
V+ LGRAG+ +E +FI+ +P + +IWR LL S VH ++ + + AL +++ L+P
Sbjct: 466 VDLLGRAGLVDEAYQFIR-TMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSH 524
Query: 248 -GMYV---------GCW-----------------------IEIQNKIYEFVSNEELTSEV 274
G YV G W IE+ ++EF + + E+
Sbjct: 525 SGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPEL 584
Query: 275 SDKLAEIEE---NMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMP 316
+ ++EE +K G+V N + + ++ A+A GL+ G
Sbjct: 585 REIYQKVEEMIGRIKVAGYVPNTADVRLEVEEREKEVSVSHHSEKLAIAFGLMKLDPGAT 644
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
R+ K++ +C HSA + +S + +RE+VV+D FHHFKDG CSC D
Sbjct: 645 IRLSKNLRVCADCHSATKLISKVYDREIVVRDRNIFHHFKDGTCSCND 692
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 6/152 (3%)
Query: 14 WNLLLKACIKAKDYE----MVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQ 69
+N+L++A + A E + E+L C D ++ L SC L+VG Q
Sbjct: 86 YNVLMRAFLHAGHPEDALHLFIEMLHAASACPA--DQHTAACALKSCSRMCALDVGRGVQ 143
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
AY KRGL++ V + LI++ + CG + A L F + E + W I++A + +G
Sbjct: 144 AYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWM 203
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
E +++FK + + T S + A +G
Sbjct: 204 EVVEMFKGMLEVGVAFDEVTLVSVVTACGRIG 235
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 68/148 (45%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ A +K D+ V E+ + + D ++ ++ +C +G ++
Sbjct: 189 WNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVD 248
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ GL +P + L+++ ++CG+I A F ++ ++W+ +IS EAL
Sbjct: 249 EEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALG 308
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMG 161
LF + Q N T S L A A++G
Sbjct: 309 LFSEMQLARVEPNDVTMVSVLSACAVLG 336
>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Vitis vinifera]
Length = 786
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 189/410 (46%), Gaps = 86/410 (20%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W L+ C+ YE L +++ D I +L++C +L G Q A
Sbjct: 408 ISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHAN 467
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K GL S +V N L+++ ++CG I+DA+ F S ++ ++WT +I +G +
Sbjct: 468 FLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRDH 527
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
GLV F SMEEVY I+P EHY+ M++
Sbjct: 528 ----------------------------AGLVEHGRSYFQSMEEVYGIKPGPEHYACMID 559
Query: 192 ALGRAGMFEEVLEFIK--GIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249
LGR+G E E + + P +W+ LL + RVHG+++L + A + L EL+P
Sbjct: 560 LLGRSGKLMEAKELLNQMAVQPD---ATVWKALLAACRVHGNVELGERAANNLFELEPKN 616
Query: 250 YV----------------------------------GC-WIEIQNKIYEFVSNEE---LT 271
V GC WIE+ +K++ F+S + T
Sbjct: 617 AVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRT 676
Query: 272 SEVSDKLAEIEENMKELGFV--LNRSL-------------YQTKMKAVALGLISFPHGMP 316
+E+ K+ EI +KE G+V +N +L Y ++ AVA GL++ P G P
Sbjct: 677 AEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAP 736
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+ K++ +CG H+A +++S + R ++++D FHHF++G CSC D +
Sbjct: 737 IRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACSCSDYW 786
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 56/116 (48%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ IL +C + G Q + + G ++ VG+ L+++ S+CG + +A
Sbjct: 239 NQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRML 298
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
++ + +SW +I V G EAL LF+ R+ ++ T+ S L ++ +
Sbjct: 299 ETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFV 354
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
+ ++ G + + N +++ S+CG++DDA F P+++ SW +I A N G
Sbjct: 29 RRFVNSCGTVHSSSDSNWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRL 88
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174
+EA LF + R + T+ S + Y G EA LF M+
Sbjct: 89 NEARKLFYETPIR----SCITWSSLISGYCRYGCDVEALELFWEMQ 130
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
Query: 12 IPWNLLLKA-CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
I W+ L+ C D E + EL +Q + ++ +L C +LL G Q A
Sbjct: 104 ITWSSLISGYCRYGCDVEAL-ELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHA 162
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK-NSLSWTFIISARVNHGHPS 129
+ K S+ V L+++ ++C I +A+ F+ P+K N + WT +++ +G
Sbjct: 163 HAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGH 222
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKA 156
+A++ F+D + N TF S L A
Sbjct: 223 KAIECFRDMRGEGIECNQFTFPSILTA 249
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I + G++++A F TP ++ ++W+ +IS +G EAL+LF + Q+
Sbjct: 76 NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV-- 202
N T+ S L+ ++ L+ + ++ + I+ + + +V L M+ +
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQI-----HAHAIKTQFDSNAFVVTGL--VDMYAKCKC 188
Query: 203 ---LEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231
E++ + P K ++W ++ +GD
Sbjct: 189 ILEAEYLFELAPDKRNHVLWTAMVTGYSQNGD 220
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 124/427 (29%), Positives = 197/427 (46%), Gaps = 65/427 (15%)
Query: 4 CSLISDV-----EIP------WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDI 52
CS +SD EIP WN L+ + + V ++ +Q+ ++ +
Sbjct: 190 CSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGV 249
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
L +C + LN G Y+ L + VG LI++ ++CG +D+A+ FK+ KN
Sbjct: 250 LLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNV 309
Query: 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS 172
+W +IS +G AL F + TF L A GLV E F S
Sbjct: 310 YTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTS 369
Query: 173 MEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDM 232
M+E + + P EHY MV+ LGRAG +E + I+ + + P+IWR LL + R+HG++
Sbjct: 370 MKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAM-SMQPDPIIWRELLGACRIHGNI 428
Query: 233 KLAKYALDKLLELDPG---MYV-------------------------------GC-WIEI 257
+L ++A+ KLLEL+P YV GC IEI
Sbjct: 429 QLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIEI 488
Query: 258 QNKIYEFVSNEELT---SEVSDKLAEIEENMKELGFVLNRS---------------LYQT 299
N +YEFV + + EV LA++ + +K G+V + +Y +
Sbjct: 489 DNVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYVADTGMASYDIEEEEKEHSLMYHS 548
Query: 300 KMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGK 359
+ A+A GL+ P G+ R++K++ +C H + +S + R++ V+D FHHF G
Sbjct: 549 EKLALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKIVSKVYRRDISVRDRNRFHHFVGGA 608
Query: 360 CSCKDAY 366
CSCKD +
Sbjct: 609 CSCKDYW 615
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 52/124 (41%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F DS + +L S +G + + G S+ V L+N+ C + DA
Sbjct: 139 FPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQ 198
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F P++N +SW +I+ ++ + +D+F++ Q T L A A +G
Sbjct: 199 VFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGA 258
Query: 163 VGEA 166
+ +
Sbjct: 259 LNQG 262
>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1047
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 186/408 (45%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN L+ ++ + E + R+ ++++ + + + G Q A
Sbjct: 641 IAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAV 700
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+TK G S V N +I++ ++CG I DA F KN +SW +I+A HG SEA
Sbjct: 701 ITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEA 760
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LD F N T L A + +GLV + F SM Y + P EHY +V+
Sbjct: 761 LDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVD 820
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
L RAG+ +FI + P + L+WRTLL + VH +M++ ++A LLEL+P
Sbjct: 821 MLTRAGLLSRAKDFILEM-PIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSA 879
Query: 248 ------GMYVGC-------------------------WIEIQNKIYEFV---SNEELTSE 273
+Y C WIE++N I+ F N L E
Sbjct: 880 TYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADE 939
Query: 274 VSDKLAEIEENMKELGFVLN----RSLYQTKMK-----------AVALGLISFPHGMPTR 318
+ + ++ + E+G+V + S Q + K A++ GL+S P MP
Sbjct: 940 IHEYFKDLTKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAISFGLLSLPATMPIN 999
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ +C H +F+S + RE++V+D FHHF+ G CSCKD +
Sbjct: 1000 VMKNLRVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + + +++C L G Q A G S N L+ + S+CG I++A LAF
Sbjct: 573 DEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAF 632
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ T ++++W ++S G+ EAL +F N TF SA+KA
Sbjct: 633 EQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKA 684
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N L+ + E EL +R+QL DS ++ ++ +C + L G Q AY
Sbjct: 338 VTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAY 397
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
TK G S+ + L+N+ ++C I+ A F T +N + W ++ A +
Sbjct: 398 TTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNS 457
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+F+ Q N T+ S LK +G
Sbjct: 458 FRIFRQMQIEEIVPNQYTYPSILKTCIRLG 487
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 117/408 (28%), Positives = 188/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W ++ C+ A + L R+Q +D+ ++ L +C + +L+ G AY
Sbjct: 216 ISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAY 275
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + P +G LI++ ++CG +++A F+ EK WT +IS HG EA
Sbjct: 276 IKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREA 335
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+ F Q N TF L A + GLV EA LF SME ++ +PS EHY MV+
Sbjct: 336 LEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVD 395
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG--- 248
LGRAG+ +E E I+ + P K IW LL + +HG+++L K L+++DPG
Sbjct: 396 LLGRAGLLKEAEELIENM-PVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGG 454
Query: 249 ---------MYVGCW-----------------------IEIQNKIYEFVSNEE---LTSE 273
G W I + +EF++ +E E
Sbjct: 455 RYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKE 514
Query: 274 VSDKLAEIEENMKELGF---------------VLNRSLYQTKMKAVALGLISFPHGMPTR 318
+ L +I E ++E G+ + ++ AV GLIS GM R
Sbjct: 515 IDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIR 574
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +C H+ + +S + RE++++D FH FKDG C+C D +
Sbjct: 575 IVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 3/146 (2%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I+ ++CG+I+ A F PE+N +SWT +IS V G P EAL+LF Q
Sbjct: 188 NSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIK 247
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
++ S L+A A +G++ + + +++ + IE ++++ + G EE +E
Sbjct: 248 LDNVALVSTLQACADLGVLDQGKWIHAYIKK-HEIEIDPILGCVLIDMYAKCGDLEEAIE 306
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHG 230
+ + + +W ++ +HG
Sbjct: 307 VFRKMEEKGVS--VWTAMISGYAIHG 330
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 117/408 (28%), Positives = 188/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W ++ C+ A + L R+Q +D+ ++ L +C + +L+ G AY
Sbjct: 216 ISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAY 275
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + P +G LI++ ++CG +++A F+ EK WT +IS HG EA
Sbjct: 276 IKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREA 335
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+ F Q N TF L A + GLV EA LF SME ++ +PS EHY MV+
Sbjct: 336 LEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVD 395
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG--- 248
LGRAG+ +E E I+ + P K IW LL + +HG+++L K L+++DPG
Sbjct: 396 LLGRAGLLKEAEELIENM-PVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGG 454
Query: 249 ---------MYVGCW-----------------------IEIQNKIYEFVSNEE---LTSE 273
G W I + +EF++ +E E
Sbjct: 455 RYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKE 514
Query: 274 VSDKLAEIEENMKELGF---------------VLNRSLYQTKMKAVALGLISFPHGMPTR 318
+ L +I E ++E G+ + ++ AV GLIS GM R
Sbjct: 515 IDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIR 574
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +C H+ + +S + RE++++D FH FKDG C+C D +
Sbjct: 575 IVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 102/248 (41%), Gaps = 34/248 (13%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN +++ +K+ E L + ++Y+ +L +C + L Q A++
Sbjct: 86 WNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHII 145
Query: 74 KRGLISHPAVGNCLININSR-------------------------------CGKIDDADL 102
K G S N L+N+ S+ CG+I+ A
Sbjct: 146 KMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYE 205
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F PE+N +SWT +IS V G P EAL+LF Q ++ S L+A A +G+
Sbjct: 206 IFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGV 265
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
+ + + +++ + IE ++++ + G EE +E + + + +W +
Sbjct: 266 LDQGKWIHAYIKK-HEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVS--VWTAM 322
Query: 223 LLSSRVHG 230
+ +HG
Sbjct: 323 ISGYAIHG 330
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/368 (29%), Positives = 180/368 (48%), Gaps = 54/368 (14%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L +C NP+ L G + A + K G+ + AV N L+++ +CG ++DA + ++
Sbjct: 454 VLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRD 513
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
++W +I +G EAL F+ + N TTF + + A + LV E R F
Sbjct: 514 VVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFA 573
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231
SM + Y I P+E+HY+ MV+ L RAG E + I +P K +W LL + R HG+
Sbjct: 574 SMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVIL-TMPFKPSAAMWGALLAACRAHGN 632
Query: 232 MKLAKYALDKLLELDP---GMYVG--------------------------------CWIE 256
+++ + A ++ L+L+P G YV WIE
Sbjct: 633 VEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIE 692
Query: 257 IQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL---------------YQ 298
+ +++ FV+ ++ T E+ +L + + +K LG+V + +
Sbjct: 693 VAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPDTRFVMHDLDQEGKERAVCHH 752
Query: 299 TKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDG 358
++ A+A GLIS P P RV K++ +C H+A +F+S I RE++ +D FHHFK+G
Sbjct: 753 SEKLAIAYGLISTPPETPIRVSKNLRVCTDCHTATKFISKITGREIIARDAHRFHHFKNG 812
Query: 359 KCSCKDAY 366
+CSC D +
Sbjct: 813 ECSCGDYW 820
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 66/145 (45%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + + E H + R+ C D + IL++C P L G + A
Sbjct: 313 IAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHAR 372
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K GL+S GN LIN+ S+ G + DA F P+++ +SWT ++ + G E+
Sbjct: 373 AVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVES 432
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
FK + N T+ LKA
Sbjct: 433 FSTFKKMLQQGVEANKITYMCVLKA 457
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ IL++C +P LN G + + + GL ++ VGN LI++ ++CG + DA F
Sbjct: 144 DKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVF 203
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
+ ++ +SWT + A G+ E+L +
Sbjct: 204 DAMASRDEVSWTTLTGAYAESGYAQESLKTY 234
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+DSY +L SC+ L VG Q ++ + G+ + + N L+ + CG +++A
Sbjct: 42 VDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRL 101
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
F K+ +SW +IS + G EA +LF Q + TF S L A
Sbjct: 102 FDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSA 154
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 51 DILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK 110
++L++C + L G Q A + + S V L + +CG + DA F+ P +
Sbjct: 251 NVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNR 310
Query: 111 NSLSWTFIISARVNHGHPSEALDLF 135
+ ++W +I V+ G EA +F
Sbjct: 311 DVIAWNTMIGGLVDSGQLEEAHGMF 335
>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 674
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/432 (27%), Positives = 214/432 (49%), Gaps = 75/432 (17%)
Query: 1 LKLCS--LISDVE-IPWNLLLKACIKAKDYE--------MVHELLERIQLCCGFIDSYSI 49
L +C+ L+S+ + I WN ++ C++ ++ M+ E ++ +Q+ S
Sbjct: 252 LSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQV--------SF 303
Query: 50 CDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP- 108
++ +C + LN+G Q AY+ + G + + + L+++ ++CG I A F
Sbjct: 304 SSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEM 363
Query: 109 -EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
+++ +SWT II HGH +A+ LF++ F + L A + GLV E +
Sbjct: 364 CDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGW 423
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
+ F SM+ + + P EHY+ + + LGRAG EE +FI + + +W TLL + R
Sbjct: 424 KYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNM-GEEPTGSVWSTLLAACR 482
Query: 228 VHGDMKLAKYALDKLLELDPG----------MYVGC------------------------ 253
H +++LA+ ++K+L +DPG +Y
Sbjct: 483 AHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPAC 542
Query: 254 -WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLN-------------RSL 296
WIE+ NK++ F++ ++ ++++ L + E M++ G+VL+ R L
Sbjct: 543 SWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYVLDTNEVLHDVDEEHKRDL 602
Query: 297 YQTKMK--AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHH 354
+T + A+A G+IS G RVIK++ +C H+A +FM+ I+ RE++V+D FHH
Sbjct: 603 LRTHSERLAIAFGIISTTSGTTIRVIKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHH 662
Query: 355 FKDGKCSCKDAY 366
FK+G CSC D +
Sbjct: 663 FKNGSCSCGDYW 674
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
+ DV + WN ++ + YE +++ + DS+++ IL + G
Sbjct: 161 VRDV-VSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGK 219
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ Y + G +G+ LI++ ++C +++ + AF ++++SW II+ V +G
Sbjct: 220 EIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNG 279
Query: 127 HPSEALDLFK 136
+ L F+
Sbjct: 280 RFDQGLGFFR 289
>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 132/420 (31%), Positives = 198/420 (47%), Gaps = 69/420 (16%)
Query: 7 ISDVEIPWNLLLKACIKA-------KDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP 59
+ DV + WN L+ + + Y M+ E E I+L G + IL + +
Sbjct: 438 VKDV-VSWNTLISGYTQNGLASEAIEVYRMMEECRE-IKLNQG-----TWVSILAAYAHV 490
Query: 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
L G + ++ K L VG CLI++ +CG++ DA F P ++S+ W II
Sbjct: 491 GALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAII 550
Query: 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179
S HGH +AL LF++ Q + TF S L A + GLV E F M+E Y I
Sbjct: 551 SCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQE-YGI 609
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239
+PS +HY MV+ LGRAG E +FIK + P IW LL + R+HG+++L K+A
Sbjct: 610 KPSLKHYGCMVDLLGRAGFLEMAYDFIKDM-PLHPDASIWGALLGACRIHGNIELGKFAS 668
Query: 240 DKLLELDP---GMY---------VGCW-----------------------IEIQNKIYEF 264
D+L E+D G Y VG W IE+ ++ F
Sbjct: 669 DRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIF 728
Query: 265 VSNEELTSEVSDKLAEIE---ENMKELGFVLNRSLY---------------QTKMKAVAL 306
+ + + + AE+ MK LG++ + S ++ A+A
Sbjct: 729 YTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAF 788
Query: 307 GLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G+IS P R+ K++ +CG H+A +F+S I ERE+VV+D FHHFK+G CSC D +
Sbjct: 789 GIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDYW 848
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 75/160 (46%), Gaps = 2/160 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A + D ++QL D ++ + + +
Sbjct: 340 VSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGF 399
Query: 72 MTKRG-LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ +RG L+ +GN ++++ ++ G ID A F P K+ +SW +IS +G SE
Sbjct: 400 IMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASE 459
Query: 131 ALDLFK-DKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
A+++++ ++ R +N T+ S L AYA +G + + R+
Sbjct: 460 AIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRI 499
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ I+ + ++L+ ++L +DS ++ IL C ++ T Y+
Sbjct: 241 WNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVI 300
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K GL V N LIN+ ++ G + DA F+ ++ +SW II+A + P A
Sbjct: 301 KHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARG 360
Query: 134 LFKDKQ 139
F Q
Sbjct: 361 FFFKMQ 366
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 4/154 (2%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN ++ A ++ + + ++ L F D Y+ +L +C L G + ++
Sbjct: 142 WNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQT---LVDGRKIHCWV 198
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K G V LI++ SR G + A F P ++ SW +IS + +G+ ++AL
Sbjct: 199 FKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQAL 258
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
D+ + + +M+ T S L A +G + A
Sbjct: 259 DVLDEMRLEGINMDSVTVASILPVCAQLGDISTA 292
>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
Length = 785
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/401 (27%), Positives = 187/401 (46%), Gaps = 51/401 (12%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQA 70
+ W ++ C++ + +E L L G D ++I ++N+C + + G Q Q
Sbjct: 386 VTWTAMVSGCVQNELHEKALSLFHE-SLGAGLKPDLFTISSVMNACASLAVARAGEQIQC 444
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ TK G +GN +++ +R G +D A F+ + +SW+ +IS HG +
Sbjct: 445 FATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARD 504
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL F + N TF L A + GLV E R + +M + Y + P+ +H + +V
Sbjct: 505 ALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVV 564
Query: 191 EALGRAGMFEEVLEFI-KGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
+ LGRAG + FI GI P+IWR+LL S R+H D++ + ++++EL+P
Sbjct: 565 DLLGRAGRLADAEAFISNGIFHAD--PVIWRSLLASCRIHRDLERGQLVANRIMELEPTS 622
Query: 248 --------GMYVGC-------------------------WIEIQNKIYEFVSNEELTSEV 274
MY+ WIE++ ++ FV+ ++ E
Sbjct: 623 SASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKSHPES 682
Query: 275 SDKLAEIEENMKELGFVLNRSLYQTKMK-----------AVALGLISFPHGMPTRVIKSV 323
S ++EE + + + +K + AVALG+I P P RV+K++
Sbjct: 683 SAIYTKLEEMLSRIEKLATTDTEISKREQNLMNCHSEKLAVALGMIHLPQSAPIRVMKNL 742
Query: 324 GMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+C HS + +S RE++++DP FHHF+DG CSC D
Sbjct: 743 RVCRDCHSTMKLISKSENREIILRDPIRFHHFRDGSCSCAD 783
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 62/144 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +NLL+ A + + E L R + +D +S L +C L G A
Sbjct: 75 VSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHAL 134
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
GL S V N L+++ S+CG++ +A F E++ +SW ++S V G E
Sbjct: 135 AILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEM 194
Query: 132 LDLFKDKQWRYTSMNPTTFRSALK 155
+ +F + +N S +K
Sbjct: 195 VRVFAMMRRGGMGLNSFALGSVIK 218
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 2/128 (1%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
++ +L +C L G Q + K +G+ LI++ G ++D F+S
Sbjct: 320 FTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRS 379
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL--VG 164
+P+ + ++WT ++S V + +AL LF + + T S + A A + + G
Sbjct: 380 SPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAG 439
Query: 165 EAYRLFLS 172
E + F +
Sbjct: 440 EQIQCFAT 447
>gi|302818616|ref|XP_002990981.1| hypothetical protein SELMODRAFT_132724 [Selaginella moellendorffii]
gi|300141312|gb|EFJ08025.1| hypothetical protein SELMODRAFT_132724 [Selaginella moellendorffii]
Length = 578
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/368 (28%), Positives = 174/368 (47%), Gaps = 53/368 (14%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+LN+ N + QA +++ G + + V N L+ +CG +++ F+ P +N
Sbjct: 211 VLNASGNLASIRAAKLVQACLSETGFLGNVEVANGLLCALGKCGSLEEVAKFFRVMPVQN 270
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
+SW I+A HG+ ++LF+ Q T L + + GLV + Y FL
Sbjct: 271 QVSWNSAIAANAQHGNGVRGVELFQTMQLEGIDTGSVTLIGVLSSCSHAGLVAQGYSYFL 330
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231
+M Y + EHYS +++ L RAG E EF+K + G W TLL ++HGD
Sbjct: 331 NMHVDYGLPAEAEHYSCVIDLLSRAGWLEHAEEFVKRLPFGDESVFPWITLLCGCKLHGD 390
Query: 232 MKLAKYALDKLLELDPG----------MYVGC-------------------------WIE 256
++ A ++L L+PG +Y G WIE
Sbjct: 391 LERGGRATQRILGLNPGSTGPYLVMHNLYAGAGKWPEAAAVRKSMVDLGPKKEPGLSWIE 450
Query: 257 IQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGFVLNRS--LYQTKMK--------- 302
++ +I+EF ++ +SE+ +L + + MK GFV + +Y + K
Sbjct: 451 VKGRIHEFRVGDTSHPRSSEIHRELERLNDKMKRAGFVCDTKAVVYDLQAKEKESLLCQH 510
Query: 303 ----AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDG 358
A+A GLIS G P R++K++ +C HSA +F+S ++ RE+VV+D FHHF+ G
Sbjct: 511 SEKLAIAFGLISTAAGEPLRIMKNLRVCSDCHSATKFISGLVGREIVVRDAYRFHHFRGG 570
Query: 359 KCSCKDAY 366
CSC+D +
Sbjct: 571 ACSCEDFW 578
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 103/228 (45%), Gaps = 7/228 (3%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSIC-DILNSCLNPILLNV 64
L+ D + WN ++ + + + EL +++L G S C LN+C + +
Sbjct: 64 LVRDAAV-WNAMISLLVVHEQGDEALELCRQMRLD-GVTPSKGTCVAALNACCHSRDFSE 121
Query: 65 GTQAQAYMTKRGLISHPAVGNCLINI-NSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G + A+ + G + V L+NI +R G ++DA F + +N +SWT ++
Sbjct: 122 GLRIHAFARELGGDADTVVQTALVNIMYARLGSLEDAREIFDAMTTRNVISWTAMVGVHS 181
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
G EAL +F+ + N TF + L A + + A + + E + E
Sbjct: 182 QLGLNREALRIFRSILLEGVTPNDVTFTAVLNASGNLASIRAAKLVQACLSETGFLGNVE 241
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231
++ ALG+ G EEV +F + ++P + + W + + ++ HG+
Sbjct: 242 VANGLLC-ALGKCGSLEEVAKFFR-VMPVQ-NQVSWNSAIAANAQHGN 286
>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
Length = 706
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/413 (30%), Positives = 194/413 (46%), Gaps = 67/413 (16%)
Query: 14 WNLLLKACIKAKDYEMVHELLE-----RIQLCCGFIDSY-SICDILNSCLNPILLNVGTQ 67
W+ ++KA YE L+E R L G +Y S+ IL C +L+ G +
Sbjct: 301 WSAMIKA------YEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGRE 354
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
A M + + LI + +CG +D A F + K+ + W +I+ HG
Sbjct: 355 VHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGL 414
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
+AL +F D + S + T+ AL A + G V E +F SM I P EHYS
Sbjct: 415 GEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYS 474
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
MV+ LGR+G+ EE + IK + P + +IW L+ + R+H + ++A++A KLLEL+P
Sbjct: 475 CMVDLLGRSGLVEEAFDLIKNM-PVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEP 533
Query: 248 GM---YV-------------------------------GC-WIEIQNKIYEFVSNEELTS 272
G YV GC WIE +++ F S + L
Sbjct: 534 GNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAH 593
Query: 273 EVSDKLAEIEENMKEL----------GFVLN--------RSL-YQTKMKAVALGLISFPH 313
+ I E + L FVL+ SL Y ++ +AVA GL+ P
Sbjct: 594 PEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPE 653
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
GMP RV+K++ +CG HSA + ++ I RE++++D FHHFKDG CSC+D +
Sbjct: 654 GMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 19/157 (12%)
Query: 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV--GNCLININSRCGKIDDADLA 103
SY++ +L L+ +N + M R +++ A+ G C + G+I +A
Sbjct: 145 SYTV--LLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYC------QAGRITEARAL 196
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F P++N +SWT +IS +G + A LF+ R N ++ + L Y G V
Sbjct: 197 FDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHV 252
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
+A LF +M E P ++MV G+ GM +
Sbjct: 253 EDAAELFNAMPE----HPVAACNAMMV-GFGQRGMVD 284
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 38/187 (20%)
Query: 93 RCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWR----YTSM--- 145
R G + DA F+ PE+N +S+T ++ ++ G +EA LF + R +T+M
Sbjct: 124 RHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSG 183
Query: 146 --------------------NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
N ++ + + YA G V A +LF M E +E
Sbjct: 184 YCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMP-----ERNEVS 238
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIV--PGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
++ M+ +AG E+ E + P C +++ G + AK +K+
Sbjct: 239 WTAMLVGYIQAGHVEDAAELFNAMPEHPVAAC----NAMMVGFGQRGMVDAAKTVFEKMC 294
Query: 244 ELDPGMY 250
E D G +
Sbjct: 295 ERDDGTW 301
>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1134
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/415 (28%), Positives = 207/415 (49%), Gaps = 65/415 (15%)
Query: 11 EIPWNLL----LKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
E+ WN + L + I K ++V +++R Q +D ++ +L++C + L G
Sbjct: 726 EVSWNSMISGYLHSGILHKAMDLVWPMMQRGQK----LDGFTFATVLSACASVATLERGM 781
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ A + L S VG+ L+++ ++CGKID A F+ P +N SW +IS HG
Sbjct: 782 EVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHG 841
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
H +AL +F + S + TF L A + +GLV E Y+ F SM EVY + P EH+
Sbjct: 842 HGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHF 901
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS-SRVHG-DMKLAKYALDKLLE 244
S MV+ LGRAG +++ +FIK +P LIWRT+L + R +G + +L + A L+E
Sbjct: 902 SCMVDLLGRAGDVKKIEDFIK-TMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIE 960
Query: 245 LDPGMYV----------------------------------GC-WIEIQNKIYEFVSNEE 269
L+P V GC W+ +++ ++ FV+ ++
Sbjct: 961 LEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQ 1020
Query: 270 LTSE---VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISF 311
E + +KL E+ +++ G+V Y ++ A+A +++
Sbjct: 1021 THPEKEKIYEKLKELMNKIRDAGYVPETKYALYDLELENKEELLSYHSEKLAIAF-VLTR 1079
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+P R++K++ +CG H+A +++S I+ R+++++D FHHF G CSC D +
Sbjct: 1080 KSELPIRIMKNLRVCGDCHTAFKYISKIVGRQIILRDSNRFHHFGGGMCSCGDYW 1134
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 65 GTQAQAYMTKRGLI-SHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G + AY+ + GL+ + ++GN L+N+ +C ID+A F+ P K+++SW +IS
Sbjct: 474 GQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLD 533
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTF 150
++ EA+ F + M P+ F
Sbjct: 534 HNERFEEAVSCFHTM--KRNGMVPSNF 558
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 6/152 (3%)
Query: 11 EIPWNLLLKACIK--AKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQ 67
++ WN + A K A + + LE +Q G+ + + +IL + + +L +G Q
Sbjct: 623 QVSWNSFIGALAKYEASVLQALKYFLEMMQ--AGWRPNRVTFINILAAVSSFSVLGLGHQ 680
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK-NSLSWTFIISARVNHG 126
A + K + A+ N L+ +C +++D ++ F E+ + +SW +IS ++ G
Sbjct: 681 IHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSG 740
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+A+DL R ++ TF + L A A
Sbjct: 741 ILHKAMDLVWPMMQRGQKLDGFTFATVLSACA 772
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRC-GKIDDADLAFKSTPEKNSLSWTFIIS 120
+ +G Q A++ K +S + N L+++ S C G IDDA F +NS++W IIS
Sbjct: 259 IKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIIS 318
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMN 146
G A LF Q +N
Sbjct: 319 VYCRRGDAVSAFKLFSVMQMEGVELN 344
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 31/65 (47%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G N LINI R G + A F P+KN +SW+ +IS + P EA
Sbjct: 166 LYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEA 225
Query: 132 LDLFK 136
LFK
Sbjct: 226 CSLFK 230
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 4/164 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + +E ++ ++S+ L+SC + L +G Q
Sbjct: 523 VSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGE 582
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH-GHPSE 130
K GL +V N L+ + + I++ F PE + +SW I A + +
Sbjct: 583 GFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQ 642
Query: 131 ALDLFKD---KQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
AL F + WR + +A+ +++++GL + + L L
Sbjct: 643 ALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALIL 686
>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
Length = 1097
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 179/375 (47%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+ + IL++C + L + + GL+S VGN L+++ ++CG IDDA F
Sbjct: 724 DATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVF 783
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
E++ SWT +I HG EALD F + N ++ + L A + GLV
Sbjct: 784 DDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVD 843
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E R FLSM + Y IEP+ EHY+ MV+ LGRAG+ EE FI + P + W LL
Sbjct: 844 EGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNM-PIEPDDAPWGALLG 902
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMYVGC--------------------- 253
+ +G++++A++A + L+L P +Y
Sbjct: 903 ACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKE 962
Query: 254 ----WIEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGFVLNRSLY--------- 297
WIE+ N+I+ FV ++ + E+ +L ++ E +K G+V + L
Sbjct: 963 PGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEHK 1022
Query: 298 ------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
++ A+ GL+ P RV K++ +C H+A +F+S I RE+V +D
Sbjct: 1023 EQALCSHSEKLAIVYGLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIVARDAKR 1082
Query: 352 FHHFKDGKCSCKDAY 366
FHHFKDG CSC D +
Sbjct: 1083 FHHFKDGVCSCGDYW 1097
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W ++ + E + ++++ CG + + IL +C P+ L G + A++
Sbjct: 187 WTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHII 246
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ G S V L+N+ +CG I+DA L F E+N +SWT +I ++G EA
Sbjct: 247 QSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFH 306
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMG 161
LF Q N T+ S L A A G
Sbjct: 307 LFLQMQREGFIPNSYTYVSILNANASAG 334
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 42 GFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDA 100
GFI +SY+ ILN+ + L + ++ GL VGN L+++ ++ G IDDA
Sbjct: 315 GFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDA 374
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159
+ F E++ SWT +I HG EA LF Q N TT+ S L A A+
Sbjct: 375 RVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAI 433
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Query: 22 IKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHP 81
I AKD V L R+Q IDS+S +IL CL + + Q + K G+ +
Sbjct: 97 ITAKD--AVAMLKIRVQQGIA-IDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNL 153
Query: 82 AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWR 141
V N L+ + RCG++ A F +KN WT +I +GH +A+ ++ +
Sbjct: 154 YVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQE 213
Query: 142 YTSMNPTTFRSALKA 156
N T+ S LKA
Sbjct: 214 CGQPNEITYLSILKA 228
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 76 GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
G IS +GN LI++ ++CG IDDA L F +++ +SW ++ +G EA +F
Sbjct: 453 GFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVF 512
Query: 136 KDKQWRYTSMNPTTFRSALKAYA 158
Q + TT+ S L +
Sbjct: 513 LQMQQEGLVPDSTTYLSLLNTHG 535
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 42 GFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDA 100
GFI D+ + +IL++ ++ L + ++ T GL+ VGN L++ S+CG + A
Sbjct: 620 GFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLVD-LRVGNALVHTYSKCGNVKYA 678
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
F E+N +WT +I HG +A F + TT+ S L A A
Sbjct: 679 KQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACAST 738
Query: 161 G 161
G
Sbjct: 739 G 739
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS + +LN+ + L + + + GLIS VG+ I++ RCG IDDA L F
Sbjct: 523 DSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLF 582
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
++ +W +I EAL LF Q + TTF + L A
Sbjct: 583 DKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSA 634
>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Cucumis sativus]
Length = 816
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/409 (26%), Positives = 197/409 (48%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+PW ++ A ++ +E + ++ D + IL +C N +++G Q +
Sbjct: 409 VPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSL 468
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G +S+ G+ L++ ++CG + DA +F PE+NS+SW +ISA +G+
Sbjct: 469 LIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGT 528
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+ F+ + +F S L A + G V EA F SM ++Y + P EHY+ MV+
Sbjct: 529 LNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVD 588
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL----DP 247
L R G F+E + + + P + ++W ++L S R+H + +LAK A D+L + D
Sbjct: 589 VLCRNGRFDEAEKLMTEM-PFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDA 647
Query: 248 GMYVG--------------------------------CWIEIQNKIYEFVSNEELTSEVS 275
Y+ W+EI+++ + F +N++ E+
Sbjct: 648 APYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMK 707
Query: 276 D---KLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPT 317
K+ + + M++ G+ + + Y ++ A+A L++ P G P
Sbjct: 708 KILRKINALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPI 767
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ C H+A + +S I+ERE++V+D FHHFKDG CSC D +
Sbjct: 768 VVMKNLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 69/158 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I +N+++ + ++ +L ++Q + +L+ + + L +G Q
Sbjct: 308 ISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQ 367
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
G V N L+++ ++C +A F + K+++ WT +ISA V G E
Sbjct: 368 AITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEG 427
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
+++F D + + TF S L+A A + + +L
Sbjct: 428 INVFSDMRRTGVPADQATFASILRACANLASISLGRQL 465
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Q ++ K + + VGN L++ S+ ++D+ F PE + +S+ +I++
Sbjct: 260 GQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAW 319
Query: 125 HGHPSEALDLFKDKQW 140
+G E+ DLF+ Q+
Sbjct: 320 NGQFKESFDLFRKLQF 335
>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 833
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 118/412 (28%), Positives = 199/412 (48%), Gaps = 62/412 (15%)
Query: 12 IPWNLLLKACIK----AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQ 67
+ W+ ++ A ++ + +E H L++R + D + ++LN+C + L+VG +
Sbjct: 427 VSWSAMIGAYVENGYGTEAFETFH-LMKRSNIEP---DGVTYINLLNACGHLGALDVGME 482
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
K L+SH +GN LI +N++ G ++ A F + ++ ++W +I HG+
Sbjct: 483 IYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGN 542
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
EAL LF N TF L A + G V E R F + E I P+ + Y
Sbjct: 543 AREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYG 602
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
MV+ LGRAG +E IK + P K IW +LL++ R+HG++ +A+ A ++ L +DP
Sbjct: 603 CMVDLLGRAGELDEAELLIKSM-PVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDP 661
Query: 248 ---GMYV-------------------------------GC-WIEIQNKIYEFVSNEE--- 269
+YV GC WIE+ K++ FV +
Sbjct: 662 YDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHP 721
Query: 270 LTSEVSDKLAEIEENMKELGFV-LNRSL--------------YQTKMKAVALGLISFPHG 314
L E+ +LA + +K G++ + +++ Y ++ A+A G++S P G
Sbjct: 722 LVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKLAIAYGVLSLPSG 781
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P R+ K++ +C HSA +F+S + RE++ +D FHHFKDG CSC D +
Sbjct: 782 TPIRIYKNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSCGDYW 833
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
I DV +N+++ K+ D+E EL R+Q + S IL+ C P L G
Sbjct: 221 IRDVS-TFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGK 279
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
A GL+ V LI + + CG I+ A F + ++ +SWT +I +G
Sbjct: 280 AVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENG 339
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159
+ +A LF Q + T+ + A A+
Sbjct: 340 NIEDAFGLFATMQEEGIQPDRITYMHIMNACAI 372
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 105/241 (43%), Gaps = 10/241 (4%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
+ DV + W ++++ + + E L +Q D + I+N+C LN
Sbjct: 322 VRDV-VSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAR 380
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ + + G + V L+++ ++CG I DA F + P ++ +SW+ +I A V +G
Sbjct: 381 EIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENG 440
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL--VG-EAYRLFLSMEEVYHIEPSE 183
+ +EA + F + + T+ + L A +G VG E Y + + V H+ P
Sbjct: 441 YGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHV-PLG 499
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
IM + G E +V + + W ++ +HG+ + A Y D++L
Sbjct: 500 NALIIMN---AKHGSVERARYIFDTMVRRDV--ITWNAMIGGYSLHGNAREALYLFDRML 554
Query: 244 E 244
+
Sbjct: 555 K 555
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
Query: 31 HELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI 90
+++L+R+ IDS + + C +G Q + ++ + G + N LI +
Sbjct: 42 NDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKL 101
Query: 91 NSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT-- 148
S CG + +A F S K ++W +I+ GH EA LF +Q + P+
Sbjct: 102 YSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALF--RQMVDEGLEPSII 159
Query: 149 TFRSALKA 156
TF S L A
Sbjct: 160 TFLSVLDA 167
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDS------YSICDILNSCLNPILLNVG 65
+ WN L+ Y V + E L +D + +L++C +P LN G
Sbjct: 124 VTWNALIAG------YAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWG 177
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ A + G +S +G L+++ + G +DDA F ++ ++ ++
Sbjct: 178 KEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKS 237
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
G +A +LF Q N +F S L
Sbjct: 238 GDWEKAFELFYRMQQVGLKPNKISFLSIL 266
>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g01510-like [Cucumis
sativus]
Length = 816
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/409 (26%), Positives = 197/409 (48%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+PW ++ A ++ +E + ++ D + IL +C N +++G Q +
Sbjct: 409 VPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSL 468
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G +S+ G+ L++ ++CG + DA +F PE+NS+SW +ISA +G+
Sbjct: 469 LIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGT 528
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+ F+ + +F S L A + G V EA F SM ++Y + P EHY+ MV+
Sbjct: 529 LNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVD 588
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL----DP 247
L R G F+E + + + P + ++W ++L S R+H + +LAK A D+L + D
Sbjct: 589 VLCRNGRFDEAEKLMTEM-PFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDA 647
Query: 248 GMYVG--------------------------------CWIEIQNKIYEFVSNEELTSEVS 275
Y+ W+EI+++ + F +N++ E+
Sbjct: 648 APYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMK 707
Query: 276 D---KLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPT 317
K+ + + M++ G+ + + Y ++ A+A L++ P G P
Sbjct: 708 KILRKINALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPI 767
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ C H+A + +S I+ERE++V+D FHHFKDG CSC D +
Sbjct: 768 VVMKNLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 69/158 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I +N+++ + ++ +L ++Q + +L+ + + L +G Q
Sbjct: 308 ISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQ 367
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
G V N L+++ ++C +A F + K+++ WT +ISA V G E
Sbjct: 368 AITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEG 427
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
+++F D + + TF S L+A A + + +L
Sbjct: 428 INVFSDMRRTGVPADQATFASILRACANLASISLGRQL 465
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Q ++ K + + VGN L++ S+ ++D+ F PE + +S+ +I++
Sbjct: 260 GQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAW 319
Query: 125 HGHPSEALDLFKDKQW 140
+G E+ DLF+ Q+
Sbjct: 320 NGQFKESFDLFRKLQF 335
>gi|302780141|ref|XP_002971845.1| hypothetical protein SELMODRAFT_96499 [Selaginella moellendorffii]
gi|300160144|gb|EFJ26762.1| hypothetical protein SELMODRAFT_96499 [Selaginella moellendorffii]
Length = 383
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 189/376 (50%), Gaps = 55/376 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV-GNCLININSRCGKIDDADLA 103
D+ + +L++C N L+ G + A + + GL+ V ++ + S+CG++ +A
Sbjct: 9 DTVTYASLLDACSNLASLSQGRKLHARIAELGLLEADVVLQTSILTMYSKCGRLGEARGI 68
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F EKN ++W+ II A +G S AL LF + + TTF S L A + GLV
Sbjct: 69 FDRIGEKNIVAWSAIIIAYAQNGDCSTALKLFWKMEQAGQKASETTFVSVLYACSHAGLV 128
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+AY F +M +EP HY +V+ LGRAG + E I+ + ++W TLL
Sbjct: 129 DDAYYYFTTMMSERKLEPLPGHYGCIVDLLGRAGRLADAEELIQRM-KAPHSGVLWTTLL 187
Query: 224 LSSRVHGDMKLAKYALDKLLELDPGM---YV----------------------------- 251
+ + HGDM LA+ A +++ ELDPG YV
Sbjct: 188 GACKTHGDMMLAERAAERIRELDPGSATPYVLLSNVYSEAGRWDLAASVRKRMDNMKVKK 247
Query: 252 ---GCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENM---KELGFVLNRS---------- 295
W+E++ K++EFV+ ++ ++ + + E++ + KE G+ ++S
Sbjct: 248 PAGKSWVEVRGKLHEFVAGDQSHPKIGEIVLELKRLLALIKEAGYAADKSATLHNAEEEE 307
Query: 296 -----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
Y ++ A+ +GL+ P G P +V+K++ +C H+A +F+S +++R++V++D
Sbjct: 308 KEGLLYYHSEKLAIVMGLLHSPRGEPVQVVKNLRVCSDCHAAAKFISKVVDRQIVLRDTK 367
Query: 351 SFHHFKDGKCSCKDAY 366
FHHF+ G+CSC D +
Sbjct: 368 QFHHFEHGRCSCGDYW 383
>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Glycine max]
Length = 747
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 187/375 (49%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ +++SC N L G Q GLIS V N L+ + +CG I+D+ F
Sbjct: 374 DDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLF 433
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ +SWT ++S G +E L LF+ + TF L A + GLV
Sbjct: 434 SEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQ 493
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ ++F SM + + I P E+HY+ M++ RAG EE +FI + P + W +LL
Sbjct: 494 KGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKM-PFSPDAIGWASLLS 552
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
S R H +M++ K+A + LL+L+P Y+
Sbjct: 553 SCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKE 612
Query: 252 -GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV--LNRSLYQT----K 300
GC WI+ +N+++ F ++++ + ++ +L ++ M + G+V +N L+ K
Sbjct: 613 PGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDDSEK 672
Query: 301 MK---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+K A+A GLI P G+P RV+K++ +CG H+A +++S I +RE++V+D
Sbjct: 673 IKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAAR 732
Query: 352 FHHFKDGKCSCKDAY 366
FH FKDG+CSC D +
Sbjct: 733 FHLFKDGRCSCGDFW 747
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D Y+ +L +C + L G Q AY+ + + VG+ L+++ +C I A+
Sbjct: 272 MDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETV 331
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
F+ KN +SWT ++ +G+ EA+ +F D Q
Sbjct: 332 FRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQ 367
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N LI RC +I+D+ F EK+S+SWT +I+ +G EA+DLF++ +
Sbjct: 212 NTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLE 271
Query: 145 MNPTTFRSALKA 156
M+ TF S L A
Sbjct: 272 MDQYTFGSVLTA 283
>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
Length = 798
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 128/413 (30%), Positives = 194/413 (46%), Gaps = 67/413 (16%)
Query: 14 WNLLLKACIKAKDYEMVHELLE-----RIQLCCGFIDSY-SICDILNSCLNPILLNVGTQ 67
W+ ++KA YE L+E R L G +Y S+ IL C +L+ G +
Sbjct: 301 WSAMIKA------YEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGRE 354
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
A M + + LI + +CG +D A F + K+ + W +I+ HG
Sbjct: 355 VHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGL 414
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
+AL +F D + S + T+ AL A + G V E +F SM I P EHYS
Sbjct: 415 GEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYS 474
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
MV+ LGR+G+ EE + IK + P + +IW L+ + R+H + ++A++A KLLEL+P
Sbjct: 475 CMVDLLGRSGLVEEAFDLIKNM-PVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEP 533
Query: 248 GM---YV-------------------------------GC-WIEIQNKIYEFVSNEELTS 272
G YV GC WIE +++ F S + L
Sbjct: 534 GNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAH 593
Query: 273 EVSDKLAEIEENMKEL----------GFVLN--------RSL-YQTKMKAVALGLISFPH 313
+ I E + L FVL+ SL Y ++ +AVA GL+ P
Sbjct: 594 PEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPE 653
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
GMP RV+K++ +CG HSA + ++ I RE++++D FHHFKDG CSC+D +
Sbjct: 654 GMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 93 RCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRS 152
+ G+I +A F P++N +SWT +IS +G + A LF+ R N ++ +
Sbjct: 186 QAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTA 241
Query: 153 ALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
L Y G V +A LF +M E P ++MV G+ GM +
Sbjct: 242 MLVGYIQAGHVEDAAELFNAMPE----HPVAACNAMMV-GFGQRGMVD 284
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 66 TQAQAY---MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
T+A+A M KR ++S A +I+ ++ G+++ A F+ PE+N +SWT ++
Sbjct: 191 TEARALFDEMPKRNVVSWTA----MISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGY 246
Query: 123 VNHGHPSEALDLFK 136
+ GH +A +LF
Sbjct: 247 IQAGHVEDAAELFN 260
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 38/187 (20%)
Query: 93 RCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWR----YTSM--- 145
R G + DA F+ PE+N +S+T ++ ++ G +EA LF + R +T+M
Sbjct: 124 RHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSG 183
Query: 146 --------------------NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
N ++ + + YA G V A +LF M E +E
Sbjct: 184 YCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER-----NEVS 238
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIV--PGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
++ M+ +AG E+ E + P C +++ G + AK +K+
Sbjct: 239 WTAMLVGYIQAGHVEDAAELFNAMPEHPVAAC----NAMMVGFGQRGMVDAAKTVFEKMC 294
Query: 244 ELDPGMY 250
E D G +
Sbjct: 295 ERDDGTW 301
>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
Length = 605
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 130/409 (31%), Positives = 191/409 (46%), Gaps = 60/409 (14%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ C + + L + +Q + ++ IL++C L++G + +
Sbjct: 201 WNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIK 260
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
S+ V LI++ ++CG I A F PEKN ++W +IS HGH EAL
Sbjct: 261 SNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALK 320
Query: 134 LFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LF D +S+ PT TF S L A + GLV E +F +M + EP EHY+ MV+
Sbjct: 321 LFYD--MLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVD 378
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG ++ LEFIK + P + P +W LL + +H D LA A +KL ELDP G
Sbjct: 379 ILGRAGQLKKALEFIKAM-PVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPENIG 437
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEELTSEVSD 276
YV GC IEI + F S ++ +
Sbjct: 438 YYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQSKA 497
Query: 277 KLAEIEE---NMKELGFV----------------LNRSLYQTKMKAVALGLISFPHGMPT 317
AE+++ M E GF L ++ K+ A+A GLIS G
Sbjct: 498 IYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHSEKL-AIAFGLISTEPGAEI 556
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+IK++ +C H+ +F+S I +R +VV+D FHHFKDG CSC D +
Sbjct: 557 RIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGLCSCGDYW 605
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%)
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
+ K G++SH +V L + R ++ A F + EK SW +IS +G
Sbjct: 155 HGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLT 214
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
A+ LF+ Q + NP T S L A A +G
Sbjct: 215 DAAISLFQTMQKNNVNPNPVTVTSILSACAQIG 247
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L +G Q K G SH ++ LI++ S+CG+++ A L F +K+ +S +IS
Sbjct: 47 LKLGMQILCLAIKCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISG 106
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+G +++ LFK+ ++ +T + Y+ G
Sbjct: 107 FTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPFG 146
>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
[Vitis vinifera]
Length = 643
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 120/407 (29%), Positives = 194/407 (47%), Gaps = 56/407 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCC-GF-IDSYSICDILNSCLNPILLNVGTQAQ 69
+ WN+L+ CI + + + +Q GF D + +L +C N L G +
Sbjct: 235 VSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVH 294
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
Y+ + G + N LI + SRCG+++ A FK E+N +SW+ +IS HG+
Sbjct: 295 NYIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGR 354
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
EA++ F+ Q S + T L A + GLV + F M +V+ IEP+ HY M
Sbjct: 355 EAIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCM 414
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---D 246
V+ LGRAG+ ++ + I +V K +WRTLL + R+H L + + L+EL +
Sbjct: 415 VDLLGRAGLLDQAYQLIMSMVI-KPDSTLWRTLLGACRIHRHATLGERVIGHLIELKAQE 473
Query: 247 PGMY---------VGCW-----------------------IEIQNKIYEFVSNEEL---T 271
G Y VG W IE++ K++EFV ++ L T
Sbjct: 474 AGDYVLLLNIYSSVGNWDKVTDLRKFMKEKGIQTSPGCSTIELKGKVHEFVVDDILHPRT 533
Query: 272 SEVSDKLAEIEENMKELGFVL---------------NRSLYQTKMKAVALGLISFPHGMP 316
E+ + L EI + +K G+V NR Y ++ A+A G+++ P G
Sbjct: 534 DEIYEMLDEIGKQLKIAGYVAELSSELHNLGAEEKGNRLSYHSEKLAIAFGVLATPPGTT 593
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCK 363
RV K++ +C H+ + +S RE+V++D FHHF++G+CSC
Sbjct: 594 IRVAKNLRICVDCHNFAKVLSGAYNREVVIRDRTRFHHFREGQCSCN 640
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 86/196 (43%), Gaps = 5/196 (2%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
++ SC+ L G Q A + + G S + L+++ S C K ++A F P+ +
Sbjct: 174 VMKSCIRISSLMGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWD 233
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP--TTFRSALKAYALMGLVGEAYRL 169
++SW +IS +++ +AL +F Q P T L+A A +G + R+
Sbjct: 234 TVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERV 293
Query: 170 FLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVH 229
+EE + + + + ++ R G E+ K + + + W ++ +H
Sbjct: 294 HNYIEE-HGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNV--VSWSAMISGFAMH 350
Query: 230 GDMKLAKYALDKLLEL 245
G + A A +++ +L
Sbjct: 351 GYGREAIEAFEQMQQL 366
>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Vitis vinifera]
Length = 703
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 118/374 (31%), Positives = 186/374 (49%), Gaps = 57/374 (15%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
S+ +L+ C + L+ G Q A + K S V + LI + +CG + A F
Sbjct: 332 SLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRF 391
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
K+ + W II+ HG EAL +F + + + TF L A + G V E
Sbjct: 392 SPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGL 451
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
+F SM+ Y +EP EHY+ MV+ LGRAG+ + ++ I+ + P + +IW LL + R
Sbjct: 452 EIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKM-PVEADAIIWGALLGACR 510
Query: 228 VHGDMKLAKYALDKLLELDP---GMYV-------------------------------GC 253
H +M LA+ A KLL+L+P G Y+ GC
Sbjct: 511 THMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGC 570
Query: 254 -WIEIQNKIYEFVS-----NEELTSEVSDKLAEIEENMKELG------FVLN-------- 293
WIE++ +++ F + EL+S + L +++ ++E G FVL+
Sbjct: 571 SWIEVEKRVHMFTGGVSTKHPELSS-IMKMLEKLDGMLREAGYYPDSSFVLHDVDEEEKV 629
Query: 294 RSL-YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
RSL + ++ AVA GL+ P GMP RV+K++ +CG HSA + ++ I RE++++D F
Sbjct: 630 RSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKITGREIILRDANRF 689
Query: 353 HHFKDGKCSCKDAY 366
HHFKDG CSC+D +
Sbjct: 690 HHFKDGFCSCRDYW 703
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 15/179 (8%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M ++ ++S + LI + +ID+A F P K+ ++ T +IS G +EA
Sbjct: 135 MPEKNVVSWTVMLGGLIQVR----RIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEA 190
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+LF + R N ++ + + Y G V A +LF M E +E ++ M+
Sbjct: 191 RELFDEMPRR----NVISWTTMISGYVQNGQVDVARKLFEVMP-----EKNEVSWTAMLM 241
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMY 250
+ G EE E + P K + ++L +G++ A+ D++ E D G +
Sbjct: 242 GYTQGGRIEEASELFDAM-PVKAV-VACNAMILGFGQNGEVAKARQVFDQIREKDDGTW 298
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N I +R G+I+ A F P+K +SW +++ + P EA LF R
Sbjct: 20 NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPER--- 76
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175
N ++ + Y +V EA + F +M E
Sbjct: 77 -NTVSWNGLISGYVKNRMVSEARKAFDTMPE 106
>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
Length = 665
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 120/407 (29%), Positives = 190/407 (46%), Gaps = 56/407 (13%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ W ++ C++ KD E V E +Q +S +I +L + N L G A
Sbjct: 259 VSWTSIVACCVQNGKDLEAV-EFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHC 317
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ ++G + V + L+++ ++CG++ DA + F + +N +SW +I +G
Sbjct: 318 FALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVN 377
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+ +F + TF L A GL E F M Y + P EHY+ MV
Sbjct: 378 AVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMV 437
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
LGRAG +E + I + P + IW +LL S RVHG++ LA+ A +KL L+P
Sbjct: 438 TLLGRAGKLDEAYDLISDM-PFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENA 496
Query: 248 GMYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTS 272
G YV GC WIEI+NK++ ++ ++ + +
Sbjct: 497 GNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPMMT 556
Query: 273 EVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPT 317
+ +K+ ++ M++LGFV + ++ AVALGLIS G
Sbjct: 557 AIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVHSEKLAVALGLISTSPGTTL 616
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
RVIK++ +CG H A +F+S+ RE+ V+D FHHF GKCSC D
Sbjct: 617 RVIKNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGKCSCGD 663
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+ + L++ + L++VG Q Y K G + V LI++ +CG+ + F
Sbjct: 156 DATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVF 215
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ + S +I+ + EAL LFK+ R +N ++ S + G
Sbjct: 216 DESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDL 275
Query: 165 EAYRLFLSME 174
EA F M+
Sbjct: 276 EAVEFFREMQ 285
>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 188/406 (46%), Gaps = 53/406 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + + L +R++ DS + +L++C + ++G Y
Sbjct: 178 VAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEY 237
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ GL + +G LIN+ RCG + A F S E+N ++WT +IS +G+ S+A
Sbjct: 238 IVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQA 297
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
++LF + + N TF + L A A GLV E RLF S+ E YH+ P EH +V+
Sbjct: 298 VELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVD 357
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
LGRAG+ +E FIK +P P I +L + ++H + L + LL +P
Sbjct: 358 MLGRAGLLDEAYNFIKEEIPENPAPAILTAMLGACKMHKNFDLGAQVAEHLLAAEPENPA 417
Query: 248 -----------------------GMYVGCW--------IEIQNKIYEFVSNEELTSEVSD 276
M C +E+ K Y F ++ SE +
Sbjct: 418 HYVILSNIYALAGRMDQVEIVRNNMIRKCLKKQVGYSTVEVDQKTYLFSMGDKSHSETNA 477
Query: 277 KLAEIEENM---KELGFV-LNRSL--------------YQTKMKAVALGLISFPHGMPTR 318
++E M E G+V ++ S+ Y ++ A+A GL+ HG P R
Sbjct: 478 IYHYLDELMWKCSEAGYVPVSDSVMHELEEEEREYALRYHSEKLAIAFGLLKTSHGTPIR 537
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
++K++ MC HSA +F+S I RE++V+D FHHFK G CSC D
Sbjct: 538 IVKNLRMCEDCHSAIKFISAISSREIIVRDKLRFHHFKVGSCSCLD 583
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+Y+ ++ SC + L G ++ G V L+ + +CG + +A F
Sbjct: 110 SNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVF 169
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
E++ ++W +IS +G EA+ LF + + TF S L A A +G
Sbjct: 170 DKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLG 226
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 118/404 (29%), Positives = 197/404 (48%), Gaps = 54/404 (13%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W+ ++ A K + + EL +++ D S+ +L++C L +G + ++
Sbjct: 181 WSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVE 240
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ +G L+++ ++CG I+++ F + P K+ L+W+ +I NHG +AL
Sbjct: 241 SNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALS 300
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF + + N TF L A +GLV + + F SM +V+ + P EHY MV+ L
Sbjct: 301 LFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLL 360
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMY 250
GRAG EE +E I+ + K P+IWRTLL + R+H ++++A+ A+ KL LDP G Y
Sbjct: 361 GRAGHVEEAMELIRSMTF-KPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHY 419
Query: 251 V---------GCW-----------------------IEIQNKIYEFVSNEE---LTSEVS 275
V W IE +N ++EFVS + E+
Sbjct: 420 VLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIY 479
Query: 276 DKLAEIEENMKELGF------VLNRSLYQTKMK---------AVALGLISFPHGMPTRVI 320
L E+ + +++ G+ VL Q+K + A+A GL+ P R+
Sbjct: 480 KMLEEMMDRLRQAGYRPMTSLVLQDIDEQSKKRALAEHSEKLAIAFGLLVTPARSTLRIT 539
Query: 321 KSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
K++ C HSA + +S +R+L+V+D FHHF +G+CSCKD
Sbjct: 540 KNLRACEDCHSAIKLISLAYDRKLIVRDRNRFHHFSEGQCSCKD 583
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 192/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + A + E+ +Q D +++ ++ +C L +G + Y
Sbjct: 221 VSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVY 280
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M+++G+ VGN LI++ S+CG I+ A FK ++ +WT II +G+ EA
Sbjct: 281 MSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEA 340
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+++F + + TF L A GLV + FLSM E Y+I P+ HY +++
Sbjct: 341 IEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIID 400
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
LGRAG E L+ I + P IW TLL + RVHG+ ++ + ++LLELDP
Sbjct: 401 LLGRAGKITEALDTIDQM-PMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSM 459
Query: 248 ------GMYVGC--W-----------------------IEIQNKIYEFVSNEE---LTSE 273
+Y C W IE+ I+EFV+ ++ ++ E
Sbjct: 460 VYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKE 519
Query: 274 VSDKLAEIEENMKELGFVLN--------------RSLYQTKMK-AVALGLISFPHGMPTR 318
+ KL I ++ +G+ + + LY K A+A L+S R
Sbjct: 520 IYSKLESIISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWHSEKLAIAFALLSSKPNTVIR 579
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ MC H+A + +S + RE+VV+D FHHF+ G CSCKD +
Sbjct: 580 IVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 627
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 7/141 (4%)
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR 151
+R G++D+A F PE++++SWT +I V EAL++F++ Q+ S + T
Sbjct: 200 ARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMV 259
Query: 152 SALKAYALMGLV--GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI 209
S + A A +G + GE R+++S + I+ + +++ + G E L+ KG+
Sbjct: 260 SVITACAQLGALEMGEWVRVYMSRQ---GIKMDAFVGNALIDMYSKCGSIERALDVFKGM 316
Query: 210 VPGKLCPLIWRTLLLSSRVHG 230
W ++L V+G
Sbjct: 317 --HHRDKFTWTAIILGLAVNG 335
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 67/179 (37%), Gaps = 29/179 (16%)
Query: 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCG-FID---------SYSICDILNSC-- 56
D + WN L+ H R CG F+D + +L++C
Sbjct: 85 DTPVAWNALISG----------HNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGK 134
Query: 57 -LNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSW 115
+LL G Q + G++ V N L+++ + C + A F ++ +SW
Sbjct: 135 GTRDVLL--GMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSW 192
Query: 116 TFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174
T ++S G EA DLF R + ++ + + Y EA +F M+
Sbjct: 193 TSLLSGLARLGQVDEARDLFD----RMPERDTVSWTAMIDGYVWAARFREALEMFREMQ 247
>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Glycine max]
Length = 690
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 107/375 (28%), Positives = 177/375 (47%), Gaps = 53/375 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
ID ++I ++ C L QA A + +RG + L++ S+ G+++DA
Sbjct: 317 IDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHV 376
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F KN +SW +I+ NHG EA+++F+ N TF + L A + GL
Sbjct: 377 FNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACSYSGLS 436
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ +F SM + ++P HY+ MVE LGR G+ +E E I+ P K +W TLL
Sbjct: 437 ERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRS-APFKPTTNMWATLL 495
Query: 224 LSSRVHGDMKLAKYALDKLLELDP----------------------------------GM 249
+ R+H +++L K A + L ++P M
Sbjct: 496 TACRMHENLELGKLAAENLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGVLQTLKRKGLRM 555
Query: 250 YVGC-WIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKEL---GFV-LNRSL-------- 296
C WIE++ + Y F+ ++ S+ + ++ M E+ G+V N++L
Sbjct: 556 LPACTWIEVKKQSYAFLCGDKSHSQTKEIYEKVNNMMVEISRHGYVEENKALLPDVDEEE 615
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ A+A GLI+ PH P ++ + +CG HSA +F++ + RE+VV+D
Sbjct: 616 QRILKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIKFIAMVTGREIVVRDASR 675
Query: 352 FHHFKDGKCSCKDAY 366
FHHF+DG CSC D +
Sbjct: 676 FHHFRDGSCSCGDYW 690
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L+ VG Q + KRG+ V LI++ S+CG I+DA F PEK ++ W II+
Sbjct: 233 LVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIA 292
Query: 121 ARVNHGHPSEALDLF 135
+ HG+ EAL +
Sbjct: 293 SYALHGYSEEALSFY 307
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%)
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
YM G V N ++ ++ +CG + DA F PEK+ SW +I V+ G+ SE
Sbjct: 142 YMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSE 201
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
A LF + TF + ++A A +GLV
Sbjct: 202 AFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLV 234
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 195/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ ++ ++ V L +Q D +++ IL +C + L +G +AY
Sbjct: 318 VSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAY 377
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + VGN LI++ CG ++ A F + P ++ +SWT +I +G+ EA
Sbjct: 378 IDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEA 437
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LD+F + + T L A G+V + + F M + IEP+ HY MV+
Sbjct: 438 LDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVD 497
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
LGRAG +E E IK + P K ++W +LL + RVH D ++A+ A ++LEL+P
Sbjct: 498 LLGRAGHLKEAHEVIKNM-PVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGA 556
Query: 248 ------GMYVGC--W-----------------------IEIQNKIYEFVSNEEL---TSE 273
+Y C W IE+ ++EFV+ +++ + E
Sbjct: 557 VYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKE 616
Query: 274 VSDKLAEIEENMKELGFVLNRS--------------LYQTKMK-AVALGLISFPHGMPTR 318
+ KL E+ ++K G+ + S +Y+ K A+A GLIS G+ R
Sbjct: 617 IYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGPGVTIR 676
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ MC H + +S + RE++V+D FHHF+ G CSCKD +
Sbjct: 677 IVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 724
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 89/199 (44%), Gaps = 6/199 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN+++ ++K ++ +L + ++ S ++ +L++C LNVG + Y
Sbjct: 186 VTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRY 245
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + N LI++ + CG +D A F + ++ +SWT I++ N G A
Sbjct: 246 VKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLA 305
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F R + ++ + + Y + E LF M+ +I+P E ++
Sbjct: 306 RNYFDKMPER----DFVSWTAMIDGYLQVNRFKEVLSLFREMQAA-NIKPDEFTMVSILT 360
Query: 192 ALGRAGMFEEVLEFIKGIV 210
A G E+ E+IK +
Sbjct: 361 ACAHLGAL-ELGEWIKAYI 378
>gi|302793743|ref|XP_002978636.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
gi|300153445|gb|EFJ20083.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
Length = 438
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 117/406 (28%), Positives = 193/406 (47%), Gaps = 54/406 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
PWN ++ A ++ D L + + +S ++ ++L++C + L G + A
Sbjct: 32 FPWNAMIAAYVQHGDSRQAIRLFDELLARRIEPNSVTLMEVLDACASLAALRDGKRVHAI 91
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
G+ S AV ++++ S+CG +D+A AF +++SWT +++A HGH A
Sbjct: 92 ARDHGVDSEVAVATAIVDMYSKCGCLDEAVEAFARIERHDTVSWTAMLAAFAQHGHIDRA 151
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L F+ Q + N TF L A + GLV E + F M Y I P +HY+ MV+
Sbjct: 152 LATFQRMQEQGHKPNYVTFVHLLSACSHKGLVEEGRKYFDLMTARYGIAPDAQHYACMVD 211
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE--LDPGM 249
LGRAG +E +F+ + PG + ++LL + R + D+ + ++LE D M
Sbjct: 212 LLGRAGYLDEAEDFLNRM-PGAPHAAVLKSLLSACRSYKDVDRGERIAKRMLESFWDESM 270
Query: 250 -YV---------GCW-----------------------IEIQNKIYEFVSNEE---LTSE 273
YV G W IE++ +++EFV+ + +
Sbjct: 271 PYVVLASIYRAAGKWEEAARIRSLMVERGVRKDPGRSAIEVEGRVFEFVAGDMSHVQMNP 330
Query: 274 VSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPTR 318
+ KL E+ MKE G+V + S L+ ++ AVA GL++ P G P R
Sbjct: 331 IRAKLQELSSAMKEAGYVPDTSLVLHDVAEEEKEQVLLWHSEKLAVAFGLLNTPAGSPIR 390
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
VIK++ +C H A + +S I +R +V +D FHHF++G CSC D
Sbjct: 391 VIKNLRVCKDCHDAAKLISAIEQRRIVFRDLSRFHHFENGVCSCGD 436
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 127/414 (30%), Positives = 195/414 (47%), Gaps = 57/414 (13%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVG 65
+ DV I WN L+ + E+ + ++ C I + + IL + + L G
Sbjct: 248 VKDV-ISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQG 306
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ + K L V CLI++ +CG++ DA F P+++S++W IIS H
Sbjct: 307 MKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIH 366
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
GH + L LF + + TF S L A + G V E F M+E Y I+PS +H
Sbjct: 367 GHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKH 425
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
Y MV+ LGRAG E +FIK + P + IW LL + R+HG+++L K+A D+L E+
Sbjct: 426 YGCMVDLLGRAGYLEMAYDFIKDM-PLQPDASIWGALLGACRIHGNIELGKFASDRLFEV 484
Query: 246 DP---GMY---------VGCW-----------------------IEIQNKIYEFVSNEE- 269
D G Y VG W IE+ K+ F + +
Sbjct: 485 DSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQS 544
Query: 270 --LTSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFP 312
E+ ++L + MK LG++ + S ++ A+A G+IS P
Sbjct: 545 HPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTP 604
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P R+ K++ +CG H+A +F+S I +RE+VV+D FHHFKDG CSC D +
Sbjct: 605 PKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 16/169 (9%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y+ +L +C L G + + K G + V LI++ SR G A F
Sbjct: 117 DFYTFPPVLKACGT---LVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF 173
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA----YALM 160
P ++ SW +IS + +G+ ++ALD+ + + MN T S L YA +
Sbjct: 174 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKL 233
Query: 161 GLVGEAYRLFLSMEEVYHIEPSEE--HYSIMVEALGRAGMFEEVLEFIK 207
GL+ A+++F I P ++ ++ ++ + G+ E +E K
Sbjct: 234 GLLDSAHKVF-------EIIPVKDVISWNTLITGYAQNGLASEAIEVYK 275
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 56 CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSW 115
CL+ +L+ G +++ R L+N+ + G + + F P+K+ +W
Sbjct: 37 CLHALLVVAGKVQSIFISTR-----------LVNLYANLGDVSLSRCTFDQIPQKDVYAW 85
Query: 116 TFIISARVNHGHPSEALDLF 135
+ISA V++GH EA+ F
Sbjct: 86 NSMISAYVHNGHFHEAIGCF 105
>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 823
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 183/377 (48%), Gaps = 55/377 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+ +++ +L++ L G Q A K G S + N L+++ SRCG +DDA A
Sbjct: 448 VSTFTFASLLSAAATVGLPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRA 507
Query: 104 FKSTPEK-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F + N +SWT IISA HGH AL LF D N T+ + L A + +GL
Sbjct: 508 FDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGL 567
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V E F SM++ + + P EHY+ MV+ L R+G+ +E LEFI + P K L+W+TL
Sbjct: 568 VKEGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEM-PCKADALVWKTL 626
Query: 223 LLSSRVHGDMKLAKYALDKLLEL---DPGMYV---------GCWIEIQ------------ 258
L + R + ++++ + A +++L DP YV G W E+
Sbjct: 627 LGACRTYENIEIGEIAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRNLS 686
Query: 259 -----------NKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS--------- 295
N I+EF + + E+ KLA + +K++G+V + S
Sbjct: 687 KETGLSWMHVGNTIHEFRAGDTSHPRAQEIYAKLAVLIREIKDIGYVPDTSIVLHDMSDK 746
Query: 296 ------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
L ++ AVA GLI+ P R+ K++ +C HSA +++S RE++++D
Sbjct: 747 LKEQCLLQHSEKIAVAFGLITTLPTKPIRIFKNLRVCADCHSAIKYISKSTGREIILRDS 806
Query: 350 GSFHHFKDGKCSCKDAY 366
FH KDGKCSC + +
Sbjct: 807 NRFHRMKDGKCSCGEYW 823
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 6 LISDVEIPWNLLLKACIKA----KDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPI 60
L+ + W L++ ++ K E+ +LE GF D Y++ ++++C
Sbjct: 209 LVERTVVVWTLMITRYVQGGCAGKAVELFLGMLED-----GFEPDGYTMSSMVSACAEQG 263
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCG---KIDDADLAFKSTPEKNSLSWTF 117
+G Q + + + GL+S V L+++ ++ ++ A FK P N +SWT
Sbjct: 264 SAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTA 323
Query: 118 IISARVN-HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+IS V G + A++L + N T+ S LKA A
Sbjct: 324 LISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACA 365
>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 114/378 (30%), Positives = 189/378 (50%), Gaps = 59/378 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+SY++ +L+ + +L G Q A K G S P+V N LI + ++ G I+ A F
Sbjct: 408 NSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVF 467
Query: 105 K-STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP--TTFRSALKAYALMG 161
+K +SWT +I A HG EA++LF+ + M P T+ L A +G
Sbjct: 468 DLPNGKKEIVSWTSMIMALAQHGLGKEAINLFE--RMLSVGMKPDHITYVGVLSACTHVG 525
Query: 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221
LV + + + M EV+ IEP+ HY+ M++ GRAG+ +E FI+ + P + + W +
Sbjct: 526 LVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESM-PIEPDNIAWGS 584
Query: 222 LLLSSRVHGDMKLAKYALDKLLELDPG----------MYVGC------------------ 253
LL S ++H + LAK A ++LL +DPG +Y C
Sbjct: 585 LLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGV 644
Query: 254 -------WIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVLNRS-------- 295
WI I+N+++ F + + E+ +AEI E +K++GF+ +
Sbjct: 645 RKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEE 704
Query: 296 -------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
Y ++ A+A GL++ P R++K++ +C HSA +F+S ++ RE++V+D
Sbjct: 705 EVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRD 764
Query: 349 PGSFHHFKDGKCSCKDAY 366
FHHFKDG CSC+D +
Sbjct: 765 ATRFHHFKDGSCSCRDYW 782
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D++++ IL++C N LN+G Q AY+ + + AVGN LI++ ++ G ++ A L
Sbjct: 274 DNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIV 333
Query: 105 K--STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
+ T N +++T ++ G+ A ++F + R + + + + Y GL
Sbjct: 334 EHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDR----DVVAWTAMIVGYVQNGL 389
Query: 163 VGEAYRLFLSM 173
+A LF M
Sbjct: 390 WNDALELFRLM 400
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 4/135 (2%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
+++ ++L+SC L++G + +++ K GL S V L+N+ ++CG A + F
Sbjct: 143 FTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDR 202
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
KN +W +IS + G A F+ + + ++ S + Y+ G EA
Sbjct: 203 MTVKNISTWNALISLYMQSGQFELAASQFE----KMPDRDIVSWNSMISGYSQQGYNLEA 258
Query: 167 YRLFLSMEEVYHIEP 181
+F M ++P
Sbjct: 259 LVIFSKMLNEPSLKP 273
>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G + + K L S VG CLI++ +CGK+DDA F P KNS+ W +IS
Sbjct: 212 LQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISC 271
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
HG +AL+LF++ + + TF S L A + GLV +A F MEE Y I+P
Sbjct: 272 YGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKP 331
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
S +HY MV+ GRAG E FIK + P + W LL + R+HG+++L K+A ++
Sbjct: 332 SLKHYGCMVDLFGRAGELEMAFNFIKKM-PIQPDASAWGALLNACRIHGNIELGKHASER 390
Query: 242 LLELDP---GMY---------VGCW-----------------------IEIQNKIYEFVS 266
L E+D G Y VG W I + NK+ F +
Sbjct: 391 LFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYT 450
Query: 267 NEEL---TSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGL 308
+ E+ +L ++ +K +G+V + ++ A+A G+
Sbjct: 451 GNQTHPKCEEIYRELRDLTSKIKTIGYVPDFCFVLQDVEEDEKEHILMGHSERLAIAYGI 510
Query: 309 ISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
IS P R+ K++ +CG H+ +F+S I ERE++V+D FHHFK G CSC D +
Sbjct: 511 ISTSPKTPIRIFKNLRVCGDCHTVTKFISIITEREIIVRDSSRFHHFKGGTCSCGDYW 568
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G + + K G V L+++ SR G + DA F P ++ SW +IS
Sbjct: 13 GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQ 72
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG--LVGEAYRLFL 171
+G+ +EALD+ + + M+ T S L A +G L G+ L++
Sbjct: 73 NGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYV 121
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 98/224 (43%), Gaps = 7/224 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ + + ++ + ++L +D+ ++ +L C + G Y+
Sbjct: 63 WNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVI 122
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K GL V N LIN+ ++ G + A F K+ +SW +I+ +G SEA++
Sbjct: 123 KHGLEFELFVSNALINMYAKFGSLGHAQKVF-GLLIKDVVSWNTLITGYAQNGLASEAIE 181
Query: 134 LF-KDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY-SIMVE 191
++ ++ N T+ S L AY+ +G + + R+ + + + S+ + +++
Sbjct: 182 VYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQV--IKNCLYSDVFVGTCLID 239
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLA 235
G+ G ++ + + P W ++ VHGD + A
Sbjct: 240 MYGKCGKLDDAISLFYQVPRKNSVP--WNAMISCYGVHGDGEKA 281
>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
Length = 785
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 186/400 (46%), Gaps = 49/400 (12%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQA 70
+ W ++ C++ + +E L L G D ++I ++N+C + + G Q Q
Sbjct: 386 VTWTAMVSGCVQNELHEKALSLFHE-SLGAGLKPDLFTISSVMNACASLAVARAGEQIQC 444
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ TK G +GN +++ +R G +D A F+ + +SW+ +IS HG +
Sbjct: 445 FATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARD 504
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL F + N TF L A + GLV E R + +M + Y + P+ +H + +V
Sbjct: 505 ALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVV 564
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG + FI + P+IWR+LL S R+H D++ + ++++EL+P
Sbjct: 565 DLLGRAGRLADAEAFISNSIF-HADPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSS 623
Query: 248 -------GMYVGC-------------------------WIEIQNKIYEFVSNEELTSEVS 275
MY+ WIE++ ++ FV+ ++ E S
Sbjct: 624 ASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKSHPESS 683
Query: 276 DKLAEIEENMKELGFVLNRSLYQTKMK-----------AVALGLISFPHGMPTRVIKSVG 324
++EE + + + +K + AVALG+I P P RV+K++
Sbjct: 684 AIYTKLEEMLSRIEKLATTDTEISKREQNLMNCHSEKLAVALGMIHLPQSAPIRVMKNLR 743
Query: 325 MCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+C HS + +S RE++++DP FHHF+DG CSC D
Sbjct: 744 VCRDCHSTMKLISKSENREIILRDPIRFHHFRDGSCSCAD 783
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 62/144 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +NLL+ A + + E L R + +D +S L +C L G A
Sbjct: 75 VSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHAL 134
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
GL S V N L+++ S+CG++ +A F E++ +SW ++S V G E
Sbjct: 135 AILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEM 194
Query: 132 LDLFKDKQWRYTSMNPTTFRSALK 155
+ +F + +N S +K
Sbjct: 195 VRVFAMMRRGGMGLNSFALGSVIK 218
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 2/128 (1%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
++ +L +C L G Q + K +G+ LI++ G ++D F+S
Sbjct: 320 FTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRS 379
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL--VG 164
+P+ + ++WT ++S V + +AL LF + + T S + A A + + G
Sbjct: 380 SPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAG 439
Query: 165 EAYRLFLS 172
E + F +
Sbjct: 440 EQIQCFAT 447
>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 114/378 (30%), Positives = 189/378 (50%), Gaps = 59/378 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+SY++ +L+ + +L G Q A K G S P+V N LI + ++ G I+ A F
Sbjct: 408 NSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVF 467
Query: 105 K-STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP--TTFRSALKAYALMG 161
+K +SWT +I A HG EA++LF+ + M P T+ L A +G
Sbjct: 468 DLPNGKKEIVSWTSMIMALAQHGLGKEAINLFE--RMLSVGMKPDHITYVGVLSACTHVG 525
Query: 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221
LV + + + M EV+ IEP+ HY+ M++ GRAG+ +E FI+ + P + + W +
Sbjct: 526 LVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESM-PIEPDNIAWGS 584
Query: 222 LLLSSRVHGDMKLAKYALDKLLELDPG----------MYVGC------------------ 253
LL S ++H + LAK A ++LL +DPG +Y C
Sbjct: 585 LLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGV 644
Query: 254 -------WIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVLNRS-------- 295
WI I+N+++ F + + E+ +AEI E +K++GF+ +
Sbjct: 645 RKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEE 704
Query: 296 -------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
Y ++ A+A GL++ P R++K++ +C HSA +F+S ++ RE++V+D
Sbjct: 705 EVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRD 764
Query: 349 PGSFHHFKDGKCSCKDAY 366
FHHFKDG CSC+D +
Sbjct: 765 ATRFHHFKDGSCSCRDYW 782
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D++++ IL++C N LN+G Q AY+ + + AVGN LI++ ++ G ++ A L
Sbjct: 274 DNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIV 333
Query: 105 K--STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
+ T N +++T ++ G+ A ++F + R + + + + Y GL
Sbjct: 334 EHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDR----DVVAWTAMIVGYVQNGL 389
Query: 163 VGEAYRLFLSM 173
+A LF M
Sbjct: 390 WNDALELFRLM 400
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 4/135 (2%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
+++ ++L+SC L++G + +++ K GL S V L+N+ ++CG A + F
Sbjct: 143 FTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDR 202
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
KN +W +IS + G A F+ + + ++ S + Y+ G EA
Sbjct: 203 MTVKNISTWNALISLYMQSGQFELAASQFE----KMPDRDIVSWNSMISGYSQQGYNLEA 258
Query: 167 YRLFLSMEEVYHIEP 181
+F M ++P
Sbjct: 259 LAIFSKMLNEPSLKP 273
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 184/375 (49%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ +++SC N L G Q A GLIS V N L+ + +CG I+D+ F
Sbjct: 375 DDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLF 434
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
K+ ++WT ++S G +E + LF+ + TF L A + GLV
Sbjct: 435 NEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVE 494
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ ++F SM + I P ++HY+ M++ RAG EE FI + P + W TLL
Sbjct: 495 KGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKM-PFSPDAISWATLLS 553
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
S R +G+M + K+A + L+ELDP YV
Sbjct: 554 SCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKE 613
Query: 252 -GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV--LNRSLYQT----K 300
GC WI+ +N+++ F ++++ + ++ +L ++ M + G+V +N L+ K
Sbjct: 614 PGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEK 673
Query: 301 MK---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+K A+A GL+ P G+P RV+K++ +C H+A +++S I RE++V+D
Sbjct: 674 IKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITNREILVRDTAR 733
Query: 352 FHHFKDGKCSCKDAY 366
FH FKDG CSC D +
Sbjct: 734 FHLFKDGTCSCGDFW 748
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 34 LERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSR 93
LE +Q+ D Y+ +L +C + L G Q AY+ + + V + L+++ +
Sbjct: 268 LENLQM-----DQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCK 322
Query: 94 CGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
C I A+ FK KN +SWT ++ +G+ EA+ F D Q
Sbjct: 323 CKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQ 368
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 31/126 (24%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININS----------------------------- 92
+ +G Q ++ K G +S+ VG+ L+++ S
Sbjct: 159 VKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMG 218
Query: 93 --RCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
RCG+++D+ F E++S+SWT +I+ +G +A+D+F++ + M+ TF
Sbjct: 219 LMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTF 278
Query: 151 RSALKA 156
S L A
Sbjct: 279 GSVLTA 284
>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 614
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 117/408 (28%), Positives = 191/408 (46%), Gaps = 56/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + V EL + + D ++ +L+SC N +VG + +
Sbjct: 210 ISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFK 269
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M G S+P + N LIN+ +RCG + A F PE+ +SWT II HGH A
Sbjct: 270 MQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIA 329
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LFK+ + T F L A + GL + F M+ Y +EP EHYS MV+
Sbjct: 330 VQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVD 389
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG +E I+ + P K +W LL + ++H +++LA+ A ++++EL+P G
Sbjct: 390 LLGRAGRLKEAQTLIESM-PIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIG 448
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSN--------- 267
YV GC ++E++ +++ F+
Sbjct: 449 YYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDE 508
Query: 268 -----EELTSEVSDKLAEIEENMKEL----GFVLNRSLYQTKMKAVALGLISFPHGMPTR 318
EEL + + + + E++ +E GF R ++ AVA GL++ G
Sbjct: 509 IYRVLEELEAIIMQEFGKPEKDNREESNKDGFT--RVGVHSEKLAVAFGLLNTTTGAEVV 566
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+IK++ +C H + +S I+ R+L V+D FHHF++G CSCKD +
Sbjct: 567 IIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 614
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 62/131 (47%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
++S ++ ++ +C++PI L +G+ K G S +V NC I + +CG ++ A
Sbjct: 141 VNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKL 200
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F P K +SW ++S +G + L+L+++ +P T L + A +G
Sbjct: 201 FDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQ 260
Query: 164 GEAYRLFLSME 174
+ + M+
Sbjct: 261 SVGHEVEFKMQ 271
Score = 37.7 bits (86), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 2/152 (1%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
++ + PWN L+ K + L ++ ++++ L SC L +G+
Sbjct: 1 MNALSTPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGS 60
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST--PEKNSLSWTFIISARVN 124
Q +TK G + P V LI++ + +D+A F+ K ++ + ++S V+
Sbjct: 61 QFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVS 120
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ S+A+ LF+ +N T + A
Sbjct: 121 NSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPA 152
>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
Length = 891
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 128/415 (30%), Positives = 195/415 (46%), Gaps = 57/415 (13%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNV 64
L+ DV I WN L+ + E+ + ++ C I + + IL + + L
Sbjct: 480 LVKDV-ISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQ 538
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G + + K L V CLI++ +CG++ DA F P+++S++W IIS
Sbjct: 539 GMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGI 598
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
HGH + L LF + + TF S L A + G V E F M+E Y I+PS +
Sbjct: 599 HGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLK 657
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
HY MV+ LGRAG E FIK + P + IW LL + R+HG+++L K+A D+L E
Sbjct: 658 HYGCMVDLLGRAGYLEMAYGFIKDM-PLQPDASIWGALLGACRIHGNIELGKFASDRLFE 716
Query: 245 LDP---GMY---------VGCW-----------------------IEIQNKIYEFVSNEE 269
+D G Y VG W IE+ K+ F + +
Sbjct: 717 VDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQ 776
Query: 270 ---LTSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISF 311
E+ ++L + MK LG++ + S ++ A+A G+IS
Sbjct: 777 SHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIIST 836
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P P R+ K++ +CG H+A +F+S I +RE+VV+D FHHFKDG CSC D +
Sbjct: 837 PPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 79/166 (47%), Gaps = 3/166 (1%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
I+DV + WN ++ A + D H ++QL D ++ + +
Sbjct: 378 FITDV-VSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNS 436
Query: 66 TQAQAYMTKRG-LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
++ +RG L+ +GN ++++ ++ G +D A F+ K+ +SW +I+
Sbjct: 437 RSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQ 496
Query: 125 HGHPSEALDLFK-DKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
+G SEA++++K ++ + N T+ S L AYA +G + + R+
Sbjct: 497 NGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRI 542
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQA--QAY 71
WN ++ I+ + ++L+ ++L ++ ++ IL C P L ++ T Y
Sbjct: 284 WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVC--PQLGDISTAMLIHLY 341
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL V N LIN+ ++ G ++DA AF+ + +SW II+A + P A
Sbjct: 342 VIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTA 401
Query: 132 LDLFKDKQ 139
F Q
Sbjct: 402 HGFFVKMQ 409
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y+ +L +C L G + + K G + V LI++ SR G A F
Sbjct: 217 DFYTFPPVLKACGT---LVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF 273
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P ++ SW +IS + +G+ ++ALD+ + + MN T S L +G +
Sbjct: 274 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIS 333
Query: 165 EAYRLFL 171
A + L
Sbjct: 334 TAMLIHL 340
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 56 CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSW 115
CL+ +L+ G +++ R L+N+ + G + + F P+K+ +W
Sbjct: 137 CLHALLVVAGKVQSIFISTR-----------LVNLYANLGDVSLSRCTFDQIPQKDVYTW 185
Query: 116 TFIISARVNHGHPSEALDLF 135
+ISA V++GH EA+ F
Sbjct: 186 NSMISAYVHNGHFHEAIGCF 205
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 111/376 (29%), Positives = 179/376 (47%), Gaps = 54/376 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
++ + L++C L +G Q + K GL S VGN L+ + +CG IDDA +
Sbjct: 392 LNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIV 451
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F+ EK +SW +I+ HG EAL LF+ + + T L A + GLV
Sbjct: 452 FEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLV 511
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ F SM + Y I + +HY+ M++ LGRAG ++ +K + P + W LL
Sbjct: 512 DKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNM-PFEPDAATWGALL 570
Query: 224 LSSRVHGDMKLAKYALDKLLELDP---GMYV----------------------------- 251
+SR+HG+ +L + A + E++P GMYV
Sbjct: 571 GASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKK 630
Query: 252 ---GCWIEIQNKIYEFVSNEELTSE---VSDKLAEIEENMKELGFVLNRSL--------- 296
W+E+QNKI+ F + + E + L E++ MK+ G+V + L
Sbjct: 631 VPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEE 690
Query: 297 ------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
Y ++ AVA G+++ P G P RVIK++ +C H+A + +S I+ R ++++D
Sbjct: 691 KVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSH 750
Query: 351 SFHHFKDGKCSCKDAY 366
FHHF G+CSC D +
Sbjct: 751 RFHHFNGGQCSCGDYW 766
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 72/162 (44%), Gaps = 11/162 (6%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
NC++ + ++ DA F PE++ +SW +IS +G EA LF++ R
Sbjct: 208 NCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR--- 264
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
+ T+ + + Y G++ EA R+F M E + ++ ++ + ++ E
Sbjct: 265 -DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVS-----WNAIIAGYVQCKRMDQARE 318
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+ + + W T++ +GD+ A+ D++ + D
Sbjct: 319 LFEAMPCQNVSS--WNTMITGYAQNGDIAQARNFFDRMPQRD 358
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 44/227 (19%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ C+ + + +L E++ D S +++ C+ L
Sbjct: 81 ISWNAMISGCLSNDKFYLARQLFEKMPT----RDLVSWNVMISGCVRYRNLRAARLLFDQ 136
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M +R ++S N +++ ++ G + +A F P KNS+SW +++A V +G +A
Sbjct: 137 MPERDVVSW----NAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDA 192
Query: 132 LDLFKDK-QWRYTSMN--------------------------PTTFRSALKAYALMGLVG 164
LF+ K W S N ++ + + YA G +
Sbjct: 193 RRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELL 252
Query: 165 EAYRLFLSMEEVYHIEPSEE--HYSIMVEALGRAGMFEEVLEFIKGI 209
EA RLF EE P + ++ MV + GM +E G+
Sbjct: 253 EAQRLF---EE----SPVRDVFTWTAMVSGYVQNGMLDEARRVFDGM 292
Score = 44.7 bits (104), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 95 GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
G +D+A F PEKNS+SW II+ V +A +LF+ N +++ + +
Sbjct: 280 GMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFE----AMPCQNVSSWNTMI 335
Query: 155 KAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFI 206
YA G + +A F M + I ++ ++ ++G EE L
Sbjct: 336 TGYAQNGDIAQARNFFDRMPQRDSIS-----WAAIIAGYAQSGYGEEALHLF 382
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I ++ G I A F P+++S+SW II+ G+ EAL LF + +
Sbjct: 332 NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGER 391
Query: 145 MNPTTFRSALKAYA 158
+N +TF S L A
Sbjct: 392 LNRSTFTSTLSTCA 405
>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 891
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 127/414 (30%), Positives = 195/414 (47%), Gaps = 57/414 (13%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVG 65
+ DV I WN L+ + E+ + ++ C I + + IL + + L G
Sbjct: 481 VKDV-ISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQG 539
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ + K L V CLI++ +CG++ DA F P+++S++W IIS H
Sbjct: 540 MKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIH 599
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
GH + L LF + + TF S L A + G V E F M+E Y I+PS +H
Sbjct: 600 GHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKH 658
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
Y MV+ LGRAG E +FIK + P + IW LL + R+HG+++L K+A D+L E+
Sbjct: 659 YGCMVDLLGRAGYLEMAYDFIKDM-PLQPDASIWGALLGACRIHGNIELGKFASDRLFEV 717
Query: 246 DP---GMY---------VGCW-----------------------IEIQNKIYEFVSNEE- 269
D G Y VG W IE+ K+ F + +
Sbjct: 718 DSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQS 777
Query: 270 --LTSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFP 312
E+ ++L + MK LG++ + S ++ A+A G+IS P
Sbjct: 778 HPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTP 837
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P R+ K++ +CG H+A +F+S I +RE+VV+D FHHFKDG CSC D +
Sbjct: 838 PKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 80/166 (48%), Gaps = 3/166 (1%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
I+DV + WN ++ A + D H ++QL D ++ + +
Sbjct: 378 FITDV-VSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNS 436
Query: 66 TQAQAYMTKRG-LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
++ +RG L+ +GN ++++ ++ G +D A F+ P K+ +SW +I+
Sbjct: 437 RSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQ 496
Query: 125 HGHPSEALDLFK-DKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
+G SEA++++K ++ + N T+ S L AYA +G + + ++
Sbjct: 497 NGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKI 542
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQA--QAY 71
WN ++ I+ + ++L+ ++L ++ ++ IL C P L ++ T Y
Sbjct: 284 WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVC--PQLGDISTAMLIHLY 341
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL V N LIN+ ++ G ++DA AF+ + +SW II+A + P A
Sbjct: 342 VIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTA 401
Query: 132 LDLFKDKQ 139
F Q
Sbjct: 402 HGFFVKMQ 409
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y+ +L +C L G + + K G + V LI++ SR G A F
Sbjct: 217 DFYTFPPVLKACGT---LVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF 273
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P ++ SW +IS + +G+ ++ALD+ + + MN T S L +G +
Sbjct: 274 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIS 333
Query: 165 EAYRLFL 171
A + L
Sbjct: 334 TAMLIHL 340
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 56 CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSW 115
CL+ +L+ G +++ R L+N+ + G + + F P+K+ +W
Sbjct: 137 CLHALLVVAGKVQSIFISTR-----------LVNLYANLGDVSLSRCTFDQIPQKDVYAW 185
Query: 116 TFIISARVNHGHPSEALDLF 135
+ISA V++GH EA+ F
Sbjct: 186 NSMISAYVHNGHFHEAIGCF 205
>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
Length = 762
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 115/409 (28%), Positives = 187/409 (45%), Gaps = 54/409 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
++ W+ L+ ++ E ++ ++ ++S+ + +C LN+G+QA
Sbjct: 355 DVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHG 414
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
KRGL+S+ + ++ + S+CG++D A AF+S E ++++WT IIS HG+ +E
Sbjct: 415 DAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAE 474
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL F+ Q N TF + L A + GLV EA + SM Y ++P+ +HY M+
Sbjct: 475 ALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMI 534
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMY 250
+ RAG+ +E LE I + P + + W++LL H D+KL K A + L LDPG
Sbjct: 535 DTYSRAGLLQEALELINRM-PFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDT 593
Query: 251 VG-----------------------------------CWIEIQNKIYEFVSN-------- 267
G WI ++ +++ FV
Sbjct: 594 AGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVHRFVVGDRHHPQTE 653
Query: 268 ------EELTSEVSDK----LAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPHGMPT 317
EE V D L E ++ L + L ++ A+A GLIS P
Sbjct: 654 AIYSKLEEFKCSVIDSPVRLLNEEDDVSCSLSARKEQLLDHSEKLAIAFGLISTEDNAPI 713
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V K++ C H + +S + R++VV+D FHHFK GKCSC D +
Sbjct: 714 LVFKNLRACRDCHEFGKQVSMVTGRQIVVRDSTRFHHFKSGKCSCNDYW 762
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ +AK E+ EL R+ + +D + +L C ++G Q ++
Sbjct: 255 VTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSH 314
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G S +VG L++ +CG I+ A +F E N +SW+ +IS G +
Sbjct: 315 IVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDC 374
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
+ +F + +N + S +A A
Sbjct: 375 IKIFTSLRSEGVVLNSFIYTSVFQACA 401
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W +++ A K + E L +Q +S +L SCL P L +G Q ++
Sbjct: 154 VSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSH 213
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + L ++ V + N+ RCG ++ A L F +N+++WT ++ A
Sbjct: 214 VIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVA 273
Query: 132 LDLFKDKQWRYTSMNPTTFRSALK 155
L+LF ++ F LK
Sbjct: 274 LELFARMAMEGVELDEFVFSIVLK 297
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 75 RGLISHPA--VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
R + +P+ + NCL+ + CG D F KN +SW +ISA +G +A+
Sbjct: 114 RRTVKNPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAI 173
Query: 133 DLFKDKQWRYTSMNPTTFRSALKA 156
LF D Q N + S L++
Sbjct: 174 RLFSDMQASGIRPNSAVYMSLLQS 197
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 180/373 (48%), Gaps = 53/373 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS + +L++C + +G Y+ + + +G L+N+ SRCG + A F
Sbjct: 218 DSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVF 277
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
S EKN ++WT +IS HGH S+A++LF + + N TF + L A A GLV
Sbjct: 278 DSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVD 337
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E ++F +M++ Y + PS EH MV+ LGRAG E +FIK P + P +W +L
Sbjct: 338 EGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLG 397
Query: 225 SSRVHGDMKLAKYALDKLLEL---DPGMYVG----------------------------- 252
+ ++H + L + LL + +PG YV
Sbjct: 398 ACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKE 457
Query: 253 ---CWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV-LNRSL--------- 296
I++ +K+Y F ++ T+++ L E+ +E G++ + S+
Sbjct: 458 VGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIPASESVMHEVEEEER 517
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ A+A GL+ G+ R++K++ MC H+A +++S I RE+ V+D
Sbjct: 518 EYALRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYISIIANREINVRDRLR 577
Query: 352 FHHFKDGKCSCKD 364
FHHFKDG CSC+D
Sbjct: 578 FHHFKDGSCSCQD 590
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 46 SYSICDILNSCLNPILLNVG--TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+Y+ ++ S + ++G Y+ GL ++ V L++ ++ G + A
Sbjct: 118 NYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAY--VQAALVSFYAKSGHVMIARKV 175
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F PEK ++W +IS +G EA++LF Q + +TF S L A A +G +
Sbjct: 176 FDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAI 235
Query: 164 GEAY 167
G +
Sbjct: 236 GLGF 239
>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330 [Vitis vinifera]
Length = 1008
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 186/376 (49%), Gaps = 54/376 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D +++ ++++C + +L +G Q Y+ K G +G+ +I++ +CG ++DA L
Sbjct: 634 VDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLI 693
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F ++N + WT +IS HG EA+ LF+ + N +F L A + GL+
Sbjct: 694 FNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLL 753
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E + F M EVY I P EH++ MV+ GRAG E+ EFI KL +WR+ L
Sbjct: 754 EEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSS-VWRSFL 812
Query: 224 LSSRVHGDMKLAKYALDKLLELDP---GMYV----------------------------- 251
S RVH ++++ + KLLEL+P G Y+
Sbjct: 813 SSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKK 872
Query: 252 ---GCWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLN------------ 293
WI+++N+++ FV + +++ L E+ +KE+G+ +
Sbjct: 873 NPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQEQ 932
Query: 294 RSL---YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
R + Y ++ A+A G+IS G P RV+K++ +C H+ ++ S ++ RE++++D
Sbjct: 933 RQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDIH 992
Query: 351 SFHHFKDGKCSCKDAY 366
FHHFK G CSC D +
Sbjct: 993 RFHHFKHGHCSCADYW 1008
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 84 GNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYT 143
GN L+N+ ++ ++ A F+ P+ + SWT +IS G ++ L LF Q +
Sbjct: 324 GNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGV 383
Query: 144 SMNPTTFRSALKA 156
N T LK+
Sbjct: 384 CPNQFTLSIVLKS 396
>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
Length = 798
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 193/413 (46%), Gaps = 67/413 (16%)
Query: 14 WNLLLKACIKAKDYEMVHELLE-----RIQLCCGFIDSY-SICDILNSCLNPILLNVGTQ 67
W+ ++KA YE L+E R L G +Y S+ IL C +L+ G +
Sbjct: 301 WSAMIKA------YEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGRE 354
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
A M + + LI + +CG +D A F + K+ + W +I+ HG
Sbjct: 355 VHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGL 414
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
+AL +F D + S + T+ AL A + G V E +F SM I P EHYS
Sbjct: 415 GEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYS 474
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
MV+ LGR+G+ EE + IK + P + +IW L+ + R+H + ++A+ A KLLEL+P
Sbjct: 475 CMVDLLGRSGLVEEAFDLIKNM-PVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEP 533
Query: 248 GM---YV-------------------------------GC-WIEIQNKIYEFVSNEELTS 272
G YV GC WIE +++ F S + L
Sbjct: 534 GNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAH 593
Query: 273 EVSDKLAEIEENMKEL----------GFVLN--------RSL-YQTKMKAVALGLISFPH 313
+ I E + L FVL+ SL Y ++ +AVA GL+ P
Sbjct: 594 PEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPE 653
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
GMP RV+K++ +CG HSA + ++ I RE+V++D FHHFKDG CSC+D +
Sbjct: 654 GMPIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 19/181 (10%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M +R +S+ + L++ G++++A F P+++ ++WT ++S G +EA
Sbjct: 138 MPERNHVSYTVLLGGLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEA 193
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LF + R N ++ + + YA G V A +LF M E +E ++ M+
Sbjct: 194 RALFDEMPKR----NVVSWTAMISGYAQNGEVNLARKLFEVMPER-----NEVSWTAMLV 244
Query: 192 ALGRAGMFEEVLEFIKGIV--PGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249
+AG E+ E + P C +++ G + AK +K+ E D G
Sbjct: 245 GYIQAGHVEDAAELFNAMPEHPVAAC----NAMMVGFGQRGMVDAAKTVFEKMRERDDGT 300
Query: 250 Y 250
+
Sbjct: 301 W 301
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 66 TQAQAY---MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
T+A+A M KR ++S A +I+ ++ G+++ A F+ PE+N +SWT ++
Sbjct: 191 TEARALFDEMPKRNVVSWTA----MISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGY 246
Query: 123 VNHGHPSEALDLFK 136
+ GH +A +LF
Sbjct: 247 IQAGHVEDAAELFN 260
>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 116/408 (28%), Positives = 196/408 (48%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ A ++ E E ++ D + ++LN+C + L++G +
Sbjct: 431 VSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQ 490
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K L+SH VGN LIN+N + G I+ A F++ +++ ++W +I HG+ EA
Sbjct: 491 AIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREA 550
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LDLF N TF L A + G V E R F + + I P+ E Y MV+
Sbjct: 551 LDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVD 610
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG +E E + +P K IW TLL + R++G++ +A+ A ++ L +P
Sbjct: 611 LLGRAGELDEA-ELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGA 669
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTSE 273
+YV GC WIE++ K++ FV + E
Sbjct: 670 VYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGE 729
Query: 274 VSDKLAEIEENMKELGFV-LNRSL--------------YQTKMKAVALGLISFPHGMPTR 318
+ +LA + +K G++ + +++ Y ++ A+A G++S P G P R
Sbjct: 730 IYAELARLMTAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSLPSGAPIR 789
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +CG HSA +F+S + RE++ +D FHHFK+G CSC D +
Sbjct: 790 IFKNLRVCGDCHSASKFISKVTGREIIARDASRFHHFKNGVCSCGDYW 837
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/241 (19%), Positives = 104/241 (43%), Gaps = 10/241 (4%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
+ DV + W ++++ + + E L +Q D + I+N+C + L++
Sbjct: 326 VRDV-VSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAR 384
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ + + + G + V L+++ ++CG I DA F + ++ +SW+ +I A V +G
Sbjct: 385 EIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENG 444
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG---EAYRLFLSMEEVYHIEPSE 183
EA + F + + T+ + L A +G + E Y + + V HI
Sbjct: 445 CGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGN 504
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
++ V + G E + +V + + W ++ +HG+ + A D++L
Sbjct: 505 ALINMNV----KHGSIERARYIFENMVQRDV--VTWNVMIGGYSLHGNAREALDLFDRML 558
Query: 244 E 244
+
Sbjct: 559 K 559
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
+N+++ K+ D E +L R+Q + S IL+ C P L G A
Sbjct: 231 FNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCM 290
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
GL+ V LI + CG I+ A F ++ +SWT +I + + +A
Sbjct: 291 NTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFG 350
Query: 134 LFKDKQ 139
LF Q
Sbjct: 351 LFATMQ 356
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 31 HELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI 90
+++L R+ IDS + + C+ +G Q + ++ + G + N LI +
Sbjct: 46 NDVLHRLGEGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKL 105
Query: 91 NSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT-- 148
+S CG + +A F S K ++W II+ GH EA LF +Q +M P+
Sbjct: 106 HSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALF--RQMVDEAMEPSII 163
Query: 149 TFRSALKA 156
TF L A
Sbjct: 164 TFLIVLDA 171
>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 796
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 188/405 (46%), Gaps = 53/405 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ C++ + +E L + D ++I ++N+C + + G Q Q +
Sbjct: 391 VTWTAMISGCVQNELFERALTLFHELLGAGLKPDPFTISSVMNACASLAVARTGEQIQCF 450
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
TK G A+GN I++ +R G + A F+ + +SW+ +IS+ HG +A
Sbjct: 451 ATKSGFGRFTAMGNSCIHMYARSGDVHAAVRRFQEMESHDIVSWSAVISSHAQHGCARDA 510
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L F + N TF L A + GLV E + + +M+E Y + P+ +H + +V+
Sbjct: 511 LRFFNEMVDAKVVPNEITFLGVLTACSHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVD 570
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG + FI+ + P+IWR+LL S R+H DM+ + D+++EL P
Sbjct: 571 LLGRAGRLADAEAFIRDSIFHDE-PVIWRSLLASCRIHRDMERGQLVADRIMELQPSSSA 629
Query: 249 MYVG--------------------------------CWIEIQNKIYEFVSNEELTSE--- 273
YV WIE+++ ++ FV+ ++ E
Sbjct: 630 SYVNLYNIYLDAGELSLASKIRDVMKERGVKKEPGLSWIELRSGVHSFVAGDKSHPESNA 689
Query: 274 VSDKLAEIEENMKELGFVLNRSL--------------YQTKMKAVALGLISFPHGMPTRV 319
+ KLAE+ + +L S + ++ AVALGLI P P RV
Sbjct: 690 IYSKLAEMLSKIDKLTATDASSTKSDDTIRNEQSWMNWHSEKLAVALGLIHLPQSAPIRV 749
Query: 320 IKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+K++ +C H + +S +RE+V++D FHHF+DG CSC D
Sbjct: 750 MKNLRVCRDCHLTMKLISKSEKREIVLRDAIRFHHFRDGSCSCAD 794
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 1/145 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQA 70
+ +NLL+ A +A E E R + G D ++ L +C L G A
Sbjct: 79 VSFNLLIDAYSRAGQPEASLETFARARRSAGVRADRFTYAAALAACSRAGRLREGKAVHA 138
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
G+ V N L+++ +RCG + A F + E++ +SW ++S V G +
Sbjct: 139 LSVLEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGYVRAGAQDD 198
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALK 155
L +F + +N S +K
Sbjct: 199 MLRVFAMMRRSGIGLNSFALGSVIK 223
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 2/128 (1%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
++ ++ +C + G Q + K +G+ LI++ G ++D F S
Sbjct: 325 FTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYLNSGCMEDGFRCFTS 384
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL--VG 164
P+++ ++WT +IS V + AL LF + +P T S + A A + + G
Sbjct: 385 VPKQDVVTWTAMISGCVQNELFERALTLFHELLGAGLKPDPFTISSVMNACASLAVARTG 444
Query: 165 EAYRLFLS 172
E + F +
Sbjct: 445 EQIQCFAT 452
>gi|356534091|ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
chloroplastic-like [Glycine max]
Length = 903
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 180/359 (50%), Gaps = 40/359 (11%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D +S+ +++ ++ G Q Y K G +V N L++ S+CG + DA
Sbjct: 521 MDEFSLASFISAAAGLGIMETGKQLHCYSFKSGFERCNSVSNSLVHSYSKCGSMRDAYRV 580
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
FK E + +SW +IS ++G S+AL F D + + TF S + A + L+
Sbjct: 581 FKDITEPDRVSWNGLISGLASNGLISDALSAFDDMRLAGVKPDSVTFLSLIFACSQGSLL 640
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ F SME+ YHI P +HY +V+ LGR G EE + I+ +P K +I++TLL
Sbjct: 641 NQGLDYFYSMEKTYHITPKLDHYVCLVDLLGRGGRLEEAMGVIE-TMPFKPDSVIYKTLL 699
Query: 224 LSSRVHGDMKLAKYALDKLLEL---DPGMYV----------------------------- 251
+ +HG++ L + + LEL DP +Y+
Sbjct: 700 NACNLHGNVPLGEDMARRCLELDPCDPAIYLLLASLYDNAGLPDFGDKTRKLMRERGLRR 759
Query: 252 ---GCWIEIQNKIYEFVSNEEL-TSEVSDKLAEIEENMKELGFVLNRS---LYQTKMKAV 304
CW+E+++KIY F + E++ E+++KL + +K G+ S LY ++ A+
Sbjct: 760 SPRQCWMEVKSKIYLFSAREKIGNDEINEKLESLITEIKNRGYPYQESEDKLYHSEQLAL 819
Query: 305 ALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCK 363
A G++S P P R+ K+ +C + HS ++ ++RE++V+D FH FKDG+CSC+
Sbjct: 820 AFGVLSVPTLAPIRINKNSLICTHCHSFIMLLTQFVDREIIVRDRKRFHVFKDGQCSCR 878
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 1/157 (0%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W ++ ++ L ++L ++++ +LN+ + + L +G Q + +
Sbjct: 288 WTSIISGFVQNSQVREAVNALVDMELSGILPNNFTYASLLNASSSVLSLELGEQFHSRVI 347
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADL-AFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
GL VGN L+++ +C + AF+ N +SWT +I+ HG E++
Sbjct: 348 MVGLEGDIYVGNALVDMYMKCSHTTTNGVKAFRGIALPNVISWTSLIAGFAEHGFEEESV 407
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
LF + Q N T + L A + M + + +L
Sbjct: 408 QLFAEMQAAGVQPNSFTLSTILGACSKMKSIIQTKKL 444
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Query: 45 DSYSICDILNSCL------NPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKID 98
+S+S C +CL N L G + + K GL + N L+ + ++C +
Sbjct: 9 NSFSPCRFRETCLQVLSLCNSQTLKEGACVHSPIIKVGLQHDLYLSNNLLCLYAKCFGVG 68
Query: 99 DADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
A F P ++ +SWT ++SA + H EAL LF N T SAL++ +
Sbjct: 69 QARHLFDEMPHRDVVSWTTLLSAHTRNKHHFEALQLFDMMLGSGQCPNEFTLSSALRSCS 128
Query: 159 LMG 161
+G
Sbjct: 129 ALG 131
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 1/156 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W LL A + K + +L + + + +++ L SC G + A
Sbjct: 83 VSWTTLLSAHTRNKHHFEALQLFDMMLGSGQCPNEFTLSSALRSCSALGEFEFGAKIHAS 142
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL + +G L+++ ++C + + + +SWT +IS+ V SEA
Sbjct: 143 VVKLGLELNHVLGTTLVDLYTKCDCTVEPHKLLAFVKDGDVVSWTTMISSLVETSKWSEA 202
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
L L+ N TF L + +GL G+ Y
Sbjct: 203 LQLYVKMIEAGIYPNEFTFVKLLGMPSFLGL-GKGY 237
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 111/376 (29%), Positives = 179/376 (47%), Gaps = 54/376 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
++ + L++C L +G Q + K GL S VGN L+ + +CG IDDA +
Sbjct: 311 LNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIV 370
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F+ EK +SW +I+ HG EAL LF+ + + T L A + GLV
Sbjct: 371 FEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLV 430
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ F SM + Y I + +HY+ M++ LGRAG ++ +K + P + W LL
Sbjct: 431 DKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNM-PFEPDAATWGALL 489
Query: 224 LSSRVHGDMKLAKYALDKLLELDP---GMYV----------------------------- 251
+SR+HG+ +L + A + E++P GMYV
Sbjct: 490 GASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKK 549
Query: 252 ---GCWIEIQNKIYEFVSNEELTSE---VSDKLAEIEENMKELGFVLNRSL--------- 296
W+E+QNKI+ F + + E + L E++ MK+ G+V + L
Sbjct: 550 VPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEE 609
Query: 297 ------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
Y ++ AVA G+++ P G P RVIK++ +C H+A + +S I+ R ++++D
Sbjct: 610 KVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSH 669
Query: 351 SFHHFKDGKCSCKDAY 366
FHHF G+CSC D +
Sbjct: 670 RFHHFNGGQCSCGDYW 685
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 72/162 (44%), Gaps = 11/162 (6%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
NC++ + ++ DA F PE++ +SW +IS +G EA LF++ R
Sbjct: 127 NCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR--- 183
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
+ T+ + + Y G++ EA R+F M E + ++ ++ + ++ E
Sbjct: 184 -DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVS-----WNAIIAGYVQCKRMDQARE 237
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+ + + W T++ +GD+ A+ D++ + D
Sbjct: 238 LFEAMPCQNVSS--WNTMITGYAQNGDIAQARNFFDRMPQRD 277
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 95 GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
G +D+A F PEKNS+SW II+ V +A +LF+ N +++ + +
Sbjct: 199 GMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFE----AMPCQNVSSWNTMI 254
Query: 155 KAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFI 206
YA G + +A F M + I ++ ++ ++G EE L
Sbjct: 255 TGYAQNGDIAQARNFFDRMPQRDSIS-----WAAIIAGYAQSGYGEEALHLF 301
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I ++ G I A F P+++S+SW II+ G+ EAL LF + +
Sbjct: 251 NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGER 310
Query: 145 MNPTTFRSALKAYA 158
+N +TF S L A
Sbjct: 311 LNRSTFTSTLSTCA 324
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 100 ADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159
A L F PE++ +SW ++S +G+ EA ++F + + N ++ L AY
Sbjct: 49 ARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAAYVQ 104
Query: 160 MGLVGEAYRLFLS 172
G + +A RLF S
Sbjct: 105 NGRIEDARRLFES 117
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 192/412 (46%), Gaps = 62/412 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN L+ ++ Y L ++ + + ++ +C + L++G Q Y
Sbjct: 309 ISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGY 368
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G S+ + + L+++ S+CG I A F + +SWT II HGH EA
Sbjct: 369 VLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEA 428
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF++ + + N F + L A + +GLV EA+ F SM +VY + EHY+ + +
Sbjct: 429 VSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVAD 488
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLC--PL--IWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
LGRAG EE FI K+C P +W TLL S VH +++LA+ +K+ +D
Sbjct: 489 LLGRAGKLEEAYNFI-----SKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDS 543
Query: 248 ---GMYV-------------------------------GC-WIEIQNKIYEFVSNEE--- 269
G YV C WIE++NK + FVS +
Sbjct: 544 ENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHP 603
Query: 270 LTSEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHG 314
++++ L + E M++ G+V + S ++ AVA G+I+ G
Sbjct: 604 SMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPG 663
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV K++ +C H A +F+S I ERE++V+D FHHF G CSC D +
Sbjct: 664 TTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/147 (19%), Positives = 69/147 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N ++ ++ YE ++ + DS+++ +L + + G + Y
Sbjct: 208 VSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGY 267
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ ++G+ S +G+ L+++ ++ +I+D++ F ++ +SW +++ V +G +EA
Sbjct: 268 VIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEA 327
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L LF+ F S + A A
Sbjct: 328 LRLFRQMVTAKVKPGAVAFSSVIPACA 354
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 182/375 (48%), Gaps = 58/375 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS++I +L +C + + L G Q Y + G S+ VG L++I ++CG ++ A F
Sbjct: 422 DSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLF 481
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ PE++ +SWT +I A HGH +AL LF Q T ++ F + L A + GLV
Sbjct: 482 ERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVD 541
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTL 222
+ + F M+ Y + P EHY+ +V+ LGRAG +E IK + L P +W L
Sbjct: 542 QGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNM---SLEPDANVWGAL 598
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------------------------- 251
L + R+H +++L + A L ELDP G YV
Sbjct: 599 LGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVK 658
Query: 252 ---GC-WIEIQNKIYEFVSNEELTSEVSDKLAEIE---ENMKELGFVLNRSLY------- 297
GC + + + F+ + + A +E E M++ G+V N +L
Sbjct: 659 KQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEE 718
Query: 298 --------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
++ A++ G+I+ G+P R++K++ +C H+A +F+S I+ RE++V+D
Sbjct: 719 AKENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDA 778
Query: 350 GSFHHFKDGKCSCKD 364
FHH K+G CSC D
Sbjct: 779 NRFHHVKNGFCSCGD 793
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
I DV WN ++ + R+Q+ +S ++ +L +C + L G
Sbjct: 284 IRDVA-SWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQ 342
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q Y + G S+ VGN L+N+ ++CG ++ A F+ P+KN ++W IIS HG
Sbjct: 343 QIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHG 402
Query: 127 HPSEALDLFKDKQWRYTSMNPTTF 150
HP EAL LF + Q + + P +F
Sbjct: 403 HPHEALALFIEMQAQ--GIKPDSF 424
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +C + L G + + RG S VG L ++ ++CG +++A F
Sbjct: 119 DKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVF 178
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
P+++ +SW II+ +G P EAL LF + Q N +T S +
Sbjct: 179 DRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVM 228
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 2/148 (1%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ + + YE + L +Q+ +S ++ ++ C + + L G Q
Sbjct: 187 VSWNAIIAGYSQNGQPYEAL-ALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHC 245
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y + G+ S V N L+N+ ++CG ++ A F+ P ++ SW II + E
Sbjct: 246 YAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHE 305
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYA 158
AL F Q R N T S L A A
Sbjct: 306 ALAFFNRMQVRGIKPNSITMVSVLPACA 333
>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
Length = 782
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 114/411 (27%), Positives = 195/411 (47%), Gaps = 59/411 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W ++ A + + +L + +QL S ++ +L++C + L G Q ++
Sbjct: 375 ITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSH 434
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G V LIN+ +CGK+ +A F+ +++ L W ++ A HG+ E
Sbjct: 435 IIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDET 494
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF Q + +F S L A + G V + Y+ F++M + + I P+ E Y +V+
Sbjct: 495 LQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVD 554
Query: 192 ALGRAGMFEEVLEFI---KGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP- 247
LGRAG +E ++ + G +P ++W TLL + R H AK A +++LE DP
Sbjct: 555 LLGRAGRIQEAVDIVLKLSGCLPD---GILWMTLLGACRTHNKTDQAKAAAEQVLERDPS 611
Query: 248 --GMYV---------GCW-----------------------IEIQNKIYEFVSNEELTSE 273
G YV G W IEI N+++EF+ +
Sbjct: 612 HSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPR 671
Query: 274 VSDKLAEIE---ENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGM 315
AE++ M+ G++ + + Y ++ A+A GL+S P G
Sbjct: 672 RHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLMSTPPGT 731
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P RVIK++ +C H+A +++S + RE++V+D FH+FKDG+CSCKD +
Sbjct: 732 PLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 66/146 (45%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ AC++ + + L R+QL + ++ + N+ +P L+ G +
Sbjct: 173 VSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSL 232
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
++ R + S V N +N+ G + DA F+ +++ ++W +I+ V + + EA
Sbjct: 233 VSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEA 292
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAY 157
+ LF Q N TF L Y
Sbjct: 293 VRLFGRLQQDGIKANDITFVLMLNVY 318
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 63/147 (42%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
W ++ + DY+ + ++Q + ILN+C + L G +
Sbjct: 72 FAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQ 131
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ ++G VG LIN+ ++CG + A +FK ++ +SWT +I+A V H + A
Sbjct: 132 ILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALA 191
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L++ Q N T + AY
Sbjct: 192 RWLYRRMQLDGVVPNKITLYTVFNAYG 218
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 41/220 (18%), Positives = 87/220 (39%), Gaps = 5/220 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN+++ ++ +++ L R+Q + + +LN + L G
Sbjct: 274 VTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHEL 333
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G V L+++ RC A F K+ ++WT + A +G EA
Sbjct: 334 VKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEA 393
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS-MEEVYHIEPSEEHYSIMV 190
L LF++ Q T + L A + + + ++ +E + +E E + ++
Sbjct: 394 LQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVE--TALI 451
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
G+ G E + + + L+W ++L + HG
Sbjct: 452 NMYGKCGKMAEARSVFEKMAKRDI--LVWNSMLGAYAQHG 489
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 47/114 (41%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+ +L C + ++ G + ++ RG + V LI + ++CG + +A F
Sbjct: 4 DTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVF 63
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+ K+ +WT +I G AL +F Q T+ + L A A
Sbjct: 64 EILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACA 117
>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
Length = 822
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 179/374 (47%), Gaps = 54/374 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
I S + ++++ + +L G Q A K G S V N L+++ SRCG ++DA +
Sbjct: 448 ISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRS 507
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F ++N +SWT +IS HG+ AL LF D N T+ + L A + +GLV
Sbjct: 508 FNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLV 567
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E F SM+ + + P EHY+ MV+ L R+G+ +E LEFI + P K L+W+TLL
Sbjct: 568 REGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEM-PLKADALVWKTLL 626
Query: 224 LSSRVHGDMKLAKYALDKLLEL---DPGMYV----------------------------- 251
+ R H ++++ + A ++EL DP YV
Sbjct: 627 GACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNK 686
Query: 252 ---GCWIEIQNKIYEFVSNEELTSEVSD---KLAEIEENMKELGFVLNRS---------- 295
W+E++N +EF + + D KL + +K +G+V + S
Sbjct: 687 ETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEIKGMGYVPDTSIVLHDMSDEL 746
Query: 296 -----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
L ++ AVA GLI+ P R+ K++ +C HSA ++MS RE++++D
Sbjct: 747 KEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSN 806
Query: 351 SFHHFKDGKCSCKD 364
FH KDG+CSC +
Sbjct: 807 RFHRMKDGECSCGE 820
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 6/158 (3%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNV 64
LI + W LL+ ++ + E E+ L GF D Y++ ++++C + +
Sbjct: 214 LIEKTVVVWTLLISRYVQGECAEEAVEIFLDF-LEDGFEPDRYTMSSMISACTELGSVRL 272
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCG---KIDDADLAFKSTPEKNSLSWTFIISA 121
G Q + + G S V L+++ ++ +D A+ F+ + + +SWT +IS
Sbjct: 273 GLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISG 332
Query: 122 RVNHG-HPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
V G ++ + LF + N T+ S LKA A
Sbjct: 333 YVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACA 370
>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
Length = 822
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/398 (29%), Positives = 190/398 (47%), Gaps = 59/398 (14%)
Query: 21 CI-KAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLIS 79
CI + +D+ + H + +++ G I S + ++++ + +L G Q A K G S
Sbjct: 428 CITEGRDFPLDHRI---VRMDVG-ISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGS 483
Query: 80 HPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
V N L+++ SRCG ++DA +F ++N +SWT +IS HG+ AL LF D
Sbjct: 484 DRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMI 543
Query: 140 WRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMF 199
N T+ + L A + +GLV E F SM+ + + P EHY+ MV+ L R+G+
Sbjct: 544 LTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIV 603
Query: 200 EEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DPGMYV----- 251
+E LEFI + P K L+W+TLL + R H ++++ + ++EL DP YV
Sbjct: 604 KEALEFINEM-PLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNL 662
Query: 252 ---------------------------GCWIEIQNKIYEFVSNEELTSEVSD---KLAEI 281
W+E++N +EF + + D KL +
Sbjct: 663 YADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTL 722
Query: 282 EENMKELGFVLNRSLYQTKMK---------------AVALGLISFPHGMPTRVIKSVGMC 326
+K +G+V + S+ M AVA GLI+ P R+ K++ +C
Sbjct: 723 VRQIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVC 782
Query: 327 GYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
HSA ++MS RE++++D FH KDG+CSC +
Sbjct: 783 ADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGE 820
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 6/158 (3%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNV 64
LI + W LL+ ++ + E EL L GF D Y++ ++++C + +
Sbjct: 214 LIEKTVVVWTLLISRYVQGECAEEAVELFLDF-LEDGFEPDRYTMSSMISACTELGSVRL 272
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCG---KIDDADLAFKSTPEKNSLSWTFIISA 121
G Q + + GL S V L+++ ++ +D A+ F+ P+ + +SWT +IS
Sbjct: 273 GLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISG 332
Query: 122 RVNHG-HPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
V G ++ + LF + N T+ S LK+ A
Sbjct: 333 YVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCA 370
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/408 (26%), Positives = 192/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ ++A + E+ +Q D +++ ++ +C L +G + Y
Sbjct: 243 VSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVY 302
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M+++G+ VGN LI++ S+CG I+ A FK ++ +WT II +G+ EA
Sbjct: 303 MSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEA 362
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+++F + + TF L A GLV + FLSM E Y+I P+ HY +++
Sbjct: 363 IEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIID 422
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
GRAG E L+ I + P IW TLL + RVHG+ ++ + ++LL++DP
Sbjct: 423 LFGRAGKITEALDAIDQM-PMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENST 481
Query: 248 ------GMYVGC--W-----------------------IEIQNKIYEFVSNEE---LTSE 273
+Y C W IE+ I+EFV+ ++ ++ E
Sbjct: 482 VYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKE 541
Query: 274 VSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPTR 318
+ KL I ++ +G+ + + + ++ A+A L+S R
Sbjct: 542 IYCKLESIINDLNNVGYFPDVTEVFVEVAEEEKQKVLFWHSEKLAIAFALLSSEPNTVIR 601
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ MC H+A + +S + RE+VV+D FHHF+ G CSCKD +
Sbjct: 602 IVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 649
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 85/213 (39%), Gaps = 56/213 (26%)
Query: 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFID---------SYSICDILNSC--- 56
D + WN L+ + + + + CC F+D + +L++C
Sbjct: 107 DTPVVWNALISGHNRCRRFG---------EACCSFVDMARAGAAPTPVTYVSVLSACGKG 157
Query: 57 LNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC---------------------- 94
+LL G Q + G++ V N L+++ + C
Sbjct: 158 TGDVLL--GMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWT 215
Query: 95 ---------GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM 145
G++D+A F PE++++SWT +I V EAL++F++ Q S
Sbjct: 216 SLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSA 275
Query: 146 NPTTFRSALKAYALMGLV--GEAYRLFLSMEEV 176
+ T S + A A +G + GE R+++S + +
Sbjct: 276 DEFTMVSVITACAQLGALEMGEWVRVYMSRQGI 308
>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 701
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/408 (27%), Positives = 195/408 (47%), Gaps = 53/408 (12%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ C++ +++ R+ + S ++ +C + L++G Q
Sbjct: 294 ISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGC 353
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G + + + L+++ ++CG I A F +++ ++WT II HGH +A
Sbjct: 354 IVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDA 413
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF++ F + L A + GLV E +R F SME + I P EHY+ + +
Sbjct: 414 VSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVAD 473
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG EE +FI + + +W LL + R H ++LA+ LDKLL +D G
Sbjct: 474 LLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMG 533
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTSE 273
YV C WIE+ N+++ F++ ++ +
Sbjct: 534 AYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDK 593
Query: 274 VSDKLAEIEENMKELGFVL--NRSLY-------------QTKMKAVALGLISFPHGMPTR 318
++ L + E M++ G+V+ N+ L+ ++ A+A G+IS G R
Sbjct: 594 INKALDVLLEQMEKEGYVIDTNQVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIR 653
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
VIK++ +C H+A +F++ I+ RE+ V+D FHHFK+G CSC D +
Sbjct: 654 VIKNIRVCADCHTAIKFITKIVGREITVRDNSRFHHFKNGSCSCGDYW 701
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 7 ISDVEIPWNLLLKACIKAKDY----EMVHELLERIQLCCGFIDSYSICDILNSCLNPILL 62
+ DV + WN ++ + Y +MV E+ + +L DS+++ IL + +
Sbjct: 188 VRDV-VSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKP---DSFTLSSILPIFAEHVDV 243
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
N G + Y + G +G+ LI++ ++C +++ + AF P K+++SW II+
Sbjct: 244 NKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGC 303
Query: 123 VNHGHPSEALDLFK 136
V +G L F+
Sbjct: 304 VQNGEFDRGLGFFR 317
>gi|449510831|ref|XP_004163774.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 556
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 124/426 (29%), Positives = 198/426 (46%), Gaps = 64/426 (15%)
Query: 4 CSLISDVE-----------IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDI 52
C L +DV + WN+++ A + +YE ++ D S +
Sbjct: 132 CGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSV 191
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
L+SC N L GT + + G + + V + LI + ++CG + DA F+ T ++N
Sbjct: 192 LHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNV 251
Query: 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS 172
+ WT II+A HGH + ++LF+ + TF S L A + G V E + F S
Sbjct: 252 VCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNS 311
Query: 173 MEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDM 232
M +V+ I P EHY+ +V+ L RAG + FI+ ++P K +W LL + R H ++
Sbjct: 312 MIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIE-LMPIKPDASVWGALLSACRNHSNL 370
Query: 233 KLAKYALDKLLEL---DPGMYV-------------------------------GC-WIEI 257
+ K KL +L +PG YV GC WI+I
Sbjct: 371 IMGKEVALKLFDLEPDNPGNYVLLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDI 430
Query: 258 QNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRSL--------------YQTK 300
+N Y F ++ E T E+ + L +++E +K+ G+V Y ++
Sbjct: 431 KNSTYVFTVHDKSHEKTKEIYEMLEKLKELVKKKGYVAETEFAINTAEEYKEQSLWYHSE 490
Query: 301 MKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKC 360
A+A GL+S P G P R+ K++ CG H+ +F S I RE++V+D FHHF +G C
Sbjct: 491 KIALAFGLLSLPAGAPIRIKKNLRTCGDCHTVMKFASEIFAREIIVRDINRFHHFTNGIC 550
Query: 361 SCKDAY 366
SC D +
Sbjct: 551 SCGDYW 556
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 28 EMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL 87
EM LLE + +D S + ++C N L G Q K G+ + + N L
Sbjct: 70 EMPTLLLENLTA----LDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNSL 125
Query: 88 ININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
++ +CG +D F +T ++ ++W +I A V + + +A + F
Sbjct: 126 SDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSF 173
>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
Length = 704
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 173/375 (46%), Gaps = 53/375 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
ID+++ I+ C L QA A + + G L+++ S+ G+I+DA
Sbjct: 331 IDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHV 390
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F P KN +SW +I+ NHG EA+++F+ N TF + L A + GL
Sbjct: 391 FDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLS 450
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ +F SM + I+P HY+ M+E LGR G+ +E IK P K +W LL
Sbjct: 451 DRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKD-APFKPTVNMWAALL 509
Query: 224 LSSRVHGDMKLAKYALDKLLELDP----------------------------------GM 249
+ RVH + +L K+A +KL + P M
Sbjct: 510 TACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNXSGRLEEAAAVIQTLKRRGLRM 569
Query: 250 YVGC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS---------- 295
C WIEI+ + Y F+S ++ + E+ KL E+ + + G+V
Sbjct: 570 LPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEISKHGYVPQXKFLLPDVDEQE 629
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
LY ++ A+A GLI+ P ++++S +CG HSA + ++ + RE+VV+D
Sbjct: 630 ERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHSAIKLIALVTRREIVVRDASR 689
Query: 352 FHHFKDGKCSCKDAY 366
FHHFKDG CSC D +
Sbjct: 690 FHHFKDGSCSCGDYW 704
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYS--ICDILNSCLNPILLNVGTQAQ 69
+ WN ++ + A DY L + + F D+ S ++ + L+ G Q
Sbjct: 198 LSWNTIIGGLVDAGDYFEAFRLF--LMMWQXFSDAGSRMFVTMIRASAGLGLIFAGRQLH 255
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ K G+ V LI++ S+CG I+DA F PEK ++ W II+ HG+
Sbjct: 256 SCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSE 315
Query: 130 EALDLFKDKQWRYTSMNPTTF 150
EAL ++ + + ++ TF
Sbjct: 316 EALSMYYEMRDSGVKIDNFTF 336
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Query: 25 KDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV 83
K Y EL E ++L + +DS + ++++C+ + + YM GL +
Sbjct: 109 KRYHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYL 168
Query: 84 GNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYT 143
N ++ ++ +CG + DA F PEKN LSW II V+ G EA LF ++
Sbjct: 169 RNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFS 228
Query: 144 SMNPTTFRSALKAYALMGLV 163
F + ++A A +GL+
Sbjct: 229 DAGSRMFVTMIRASAGLGLI 248
>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
Length = 630
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 192/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W +L A + E +L + C +++ + +L++C + L G Q
Sbjct: 224 VSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGR 283
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G VGN L+ + +CG ++DA AF+ E++ +SW +I+ HG EA
Sbjct: 284 LIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEA 343
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L++F + T + T L A + GLV + F SM + + EHY+ M++
Sbjct: 344 LEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMID 403
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG E + +K + P + +W LL +SR+H + +L + A +K+ EL+P G
Sbjct: 404 LLGRAGRLAEAHDLMKDM-PFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAG 462
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEELTSEVSD 276
MYV WIE+QNK++ F + + + E
Sbjct: 463 MYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEK 522
Query: 277 KLAEIEE---NMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
A +E+ MK+ G+V + Y ++ AVA G+++ P G P R
Sbjct: 523 IYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIR 582
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
VIK++ +CG H+A +++S I R ++++D FHHF+ G CSC D +
Sbjct: 583 VIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 11/162 (6%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N L++ + GK+ +A F P ++ +SW ++S G EA LF R
Sbjct: 72 NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR--- 128
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
+ T+ + + YA G++ EA R+F +M E + ++ MV A + M +E E
Sbjct: 129 -DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQRRMMDEAKE 182
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
++P + W T+L G ++ AK D + + D
Sbjct: 183 LFN-MMPCRNVA-SWNTMLTGYAQAGMLEEAKAVFDTMPQKD 222
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 95 GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
G +++A F + PE+N++SW +++A + EA +LF R N ++ + L
Sbjct: 144 GMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR----NVASWNTML 199
Query: 155 KAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFI 206
YA G++ EA +F +M + + ++ M+ A + G EE L+
Sbjct: 200 TGYAQAGMLEEAKAVFDTMPQKDAVS-----WAAMLAAYSQGGCSEETLQLF 246
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 15/162 (9%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I+ ++ G + A F PEK+++SW +++A V +G EA LF + T
Sbjct: 10 NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR----TE 65
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE--HYSIMVEALGRAGMFEEV 202
+ ++ + + Y G + EA LF M P + ++IMV R G E
Sbjct: 66 WDVISWNALMSGYVQWGKMSEARELFDRM-------PGRDVVSWNIMVSGYARRGDMVEA 118
Query: 203 LEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+ W ++ +G ++ A+ D + E
Sbjct: 119 RRLFDAAPVRDV--FTWTAVVSGYAQNGMLEEARRVFDAMPE 158
>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Brachypodium distachyon]
Length = 598
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 181/374 (48%), Gaps = 55/374 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ +L +C +L +G + ++ K GL+ + GN LI++ ++CG +DDA F
Sbjct: 224 DGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMF 283
Query: 105 KSTP-EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
+ +SWT +I +G +AL LF + T L A + GLV
Sbjct: 284 GEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLV 343
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ +R F M+ Y I P EH MV+ LGRAG EE +I +P + ++WRTLL
Sbjct: 344 DDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYIT-TMPLEPNAVVWRTLL 402
Query: 224 LSSRVHGDMKLAKYALDKLLELDPG----------MY--VGCW----------------- 254
+ +H +++ + A +L+ELDPG +Y VG W
Sbjct: 403 GACAMHKKLEIGEAAWARLVELDPGHSGDYVLLSNLYAGVGRWADVHVLRKTMVTHGVRK 462
Query: 255 ------IEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVLNRS---------- 295
+E++N +YEFV + T ++ + L +I E ++ G++ + S
Sbjct: 463 NPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLGDIAERLRRQGYIPHTSNVLADIEDEE 522
Query: 296 -----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
Y ++ A+A L+ G P R++K++ +CG H A + +S + +RE++V+D
Sbjct: 523 KESALNYHSERLAIAFALLKSLPGTPIRIVKNLRVCGDCHMAIKLISKVYDREIIVRDRS 582
Query: 351 SFHHFKDGKCSCKD 364
FHHFK G CSCKD
Sbjct: 583 RFHHFKGGACSCKD 596
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+++ +L +C + L G A K GL+S V N L+++ CG + A F
Sbjct: 121 DTHTYPPLLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVF 180
Query: 105 K--STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
PE+N +SW +++ +G P+E L +F++ + + T S L A A +G+
Sbjct: 181 DEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGV 240
Query: 163 VGEAYRLFLSMEEV 176
+ R+ + + +V
Sbjct: 241 LALGRRVHVFVAKV 254
>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic [Vitis vinifera]
Length = 704
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 173/375 (46%), Gaps = 53/375 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
ID+++ I+ C L QA A + + G L+++ S+ G+I+DA
Sbjct: 331 IDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHV 390
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F P KN +SW +I+ NHG EA+++F+ N TF + L A + GL
Sbjct: 391 FDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLS 450
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ +F SM + I+P HY+ M+E LGR G+ +E IK P K +W LL
Sbjct: 451 DRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKD-APFKPTVNMWAALL 509
Query: 224 LSSRVHGDMKLAKYALDKLLELDP----------------------------------GM 249
+ RVH + +L K+A +KL + P M
Sbjct: 510 TACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGRLEEAAAVIQTLKRRGLRM 569
Query: 250 YVGC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS---------- 295
C WIEI+ + Y F+S ++ + E+ KL E+ + + G+V
Sbjct: 570 LPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEISKHGYVPQDKFLLPDVDEQE 629
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
LY ++ A+A GLI+ P ++++S +CG HSA + ++ + RE+VV+D
Sbjct: 630 ERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHSAIKLIALVTRREIVVRDASR 689
Query: 352 FHHFKDGKCSCKDAY 366
FHHFKDG CSC D +
Sbjct: 690 FHHFKDGSCSCGDYW 704
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYS--ICDILNSCLNPILLNVGTQAQ 69
+ WN ++ + A DY L + + F D+ S ++ + L+ G Q
Sbjct: 198 LSWNTIIGGLVDAGDYFEAFRLF--LMMWQDFSDAGSRMFVTMIRASAGLGLIFAGRQLH 255
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ K G+ V LI++ S+CG I+DA F PEK ++ W II+ HG+
Sbjct: 256 SCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSE 315
Query: 130 EALDLFKDKQWRYTSMNPTTF 150
EAL ++ + + ++ TF
Sbjct: 316 EALSMYYEMRDSGVKIDNFTF 336
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Query: 25 KDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV 83
K Y EL E ++L + +DS + ++++C+ + + YM GL +
Sbjct: 109 KRYHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYL 168
Query: 84 GNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYT 143
N ++ ++ +CG + DA F PEKN LSW II V+ G EA LF ++
Sbjct: 169 RNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFS 228
Query: 144 SMNPTTFRSALKAYALMGLV 163
F + ++A A +GL+
Sbjct: 229 DAGSRMFVTMIRASAGLGLI 248
>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 866
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 119/425 (28%), Positives = 203/425 (47%), Gaps = 66/425 (15%)
Query: 2 KLCSLISDVEI-PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
K+ LI + +I W+ +L + D E ++ ++ + ++ +LN+C P
Sbjct: 448 KIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPT 507
Query: 61 L-LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
+ G Q + K G + V + L+ + ++ G I+ A+ FK +++ +SW +I
Sbjct: 508 ASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMI 567
Query: 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179
S HG ++L +F++ + + ++ TF + A GLV E R F M + YHI
Sbjct: 568 SGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHI 627
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239
P+ EHYS MV+ RAGM E+ ++ I + P IWRTLL + RVH +++L + A
Sbjct: 628 VPTMEHYSCMVDLYSRAGMLEKAMDLINKM-PFPAGATIWRTLLAACRVHLNVQLGELAA 686
Query: 240 DKLLELDP---GMYV--------------------------------GCWIEIQNKIYEF 264
+KL+ L P YV WIE++NK + F
Sbjct: 687 EKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSF 746
Query: 265 VSN--------------EELTSEVSDK---------LAEIEENMKELGFVLNRSLYQTKM 301
++ EEL+ + D L ++EE KE+ +L++ ++
Sbjct: 747 MAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEV--ILSQ---HSER 801
Query: 302 KAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCS 361
A+A GLI+ P G P +++K++ +CG H+ + +S I R++VV+D FHHFK G CS
Sbjct: 802 LAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCS 861
Query: 362 CKDAY 366
C D +
Sbjct: 862 CGDYW 866
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W LL + E +L ++QL + ++ +L + G Q
Sbjct: 159 VSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTM 218
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL S VGN ++N+ S+ + DA F S +N++SW +I+ V +G EA
Sbjct: 219 VIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEA 278
Query: 132 LDLFKDKQWRYTSMNPTTFRSALK 155
+LF + + T F + +K
Sbjct: 279 FELFYRMRLEGVKLTQTIFATVIK 302
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
VG Q K G + +VG L+++ + ++D + F KN +SWT +++
Sbjct: 110 VGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYR 169
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
+G +AL LF Q NP TF + L A G V
Sbjct: 170 QNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAV 209
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 83/211 (39%), Gaps = 12/211 (5%)
Query: 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK 105
+YS N+ ++P +Q A + K + P+VG L + S+ G ++A F+
Sbjct: 398 TYSTILTANAAVSP------SQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFE 451
Query: 106 STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165
EK+ ++W+ ++S G A+ +F N TF S L A A E
Sbjct: 452 LIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVE 511
Query: 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS 225
+ F S + S +V + G E E K V L W +++
Sbjct: 512 QGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVS--WNSMISG 569
Query: 226 SRVHG----DMKLAKYALDKLLELDPGMYVG 252
HG +K+ + K LELD ++G
Sbjct: 570 YAQHGCGKKSLKIFEEMRSKNLELDGITFIG 600
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 91/230 (39%), Gaps = 18/230 (7%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + EL R++L + ++ C N ++ Q
Sbjct: 260 VSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQ 319
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAF-KSTPEKNSLSWTFIISARVNHGHPSE 130
+ K G + L+ S+C +IDDA F +N +SWT IIS V +G
Sbjct: 320 VIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDR 379
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS-----EEH 185
A++LF + N T+ + L A A V + L ++ Y PS +
Sbjct: 380 AMNLFCQMRREGVRPNHFTYSTILTANA---AVSPSQIHALVVKTNYENSPSVGTALSDS 436
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLA 235
YS + +A A +FE + E K IV W +L GD++ A
Sbjct: 437 YSKIGDANEAAKIFELIDE--KDIVA-------WSAMLSGYAQMGDIEGA 477
>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 131/424 (30%), Positives = 205/424 (48%), Gaps = 66/424 (15%)
Query: 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCC-----GFIDSYSICDILNSCL 57
C++ + + W+ ++ AC AK+ EM + LE QL +S ++ ++L +C
Sbjct: 241 FCAMPTKNFVSWSAMI-ACF-AKN-EMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACA 297
Query: 58 NPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTF 117
L G Y+ +RGL S V N LI + RCG+I F + ++ +SW
Sbjct: 298 GLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNS 357
Query: 118 IISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVY 177
+IS HG +A+ +F++ + +S + +F + L A + GLV E LF SM Y
Sbjct: 358 LISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKY 417
Query: 178 HIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI--VPGKLCPLIWRTLLLSSRVHGDMKLA 235
I P EHY+ MV+ LGRA +E ++ I+ + PG P +W +LL S R+H +++LA
Sbjct: 418 RIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPG---PTVWGSLLGSCRIHCNVELA 474
Query: 236 KYALDKLLELDP---GMYV-------------------------------GC-WIEIQNK 260
+ A L EL+P G YV GC WIE++ K
Sbjct: 475 ERASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRK 534
Query: 261 IYEFVSNEELTSEVSD---KLAEIEENMKELGFV--LNRSLY-------------QTKMK 302
+Y FVS +E ++ + L ++ MK G+V N LY ++
Sbjct: 535 VYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKL 594
Query: 303 AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
AVA GLI+ G R+ K++ +C H+ +F+S RE++V+D FHHFKDG CSC
Sbjct: 595 AVAFGLINTVKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFKDGVCSC 654
Query: 363 KDAY 366
D +
Sbjct: 655 GDYW 658
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 45 DSYSICDILNSCLNPIL----LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDA 100
D ++ +L +C+ L L G + A++ + G ++ V L+++ ++ G + A
Sbjct: 178 DRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYA 237
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
+ F + P KN +SW+ +I+ + P +AL+LF+
Sbjct: 238 NSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQ 273
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 6/153 (3%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICD-ILNSCLNPILLN 63
+L++D++ N L+++ K + + LL CC + + ++ SC L+
Sbjct: 41 NLMNDIKGNNNQLIQSLCKGGNLKQAIHLL-----CCEPNPTQRTFEHLICSCAQQNSLS 95
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G + G P + LIN+ G ID A F T E+ W + A
Sbjct: 96 DGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALA 155
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
G E LDL+ W + T+ LKA
Sbjct: 156 MVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKA 188
>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03880, mitochondrial; Flags: Precursor
gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/416 (27%), Positives = 205/416 (49%), Gaps = 60/416 (14%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
+++ I WN ++ + ++ EL +R++ + ++ +L +C LL +G
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279
Query: 66 TQAQAYMTK--RGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
QA ++ K + LI + N L+++ +CG ++DA F E++ ++W+ +IS
Sbjct: 280 MQAHVHIVKYDQDLI----LNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLA 335
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
+G+ EAL LF+ + T N T L A + GL+ + + F SM+++Y I+P
Sbjct: 336 QNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVR 395
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
EHY M++ LG+AG ++ ++ + + + + WRTLL + RV +M LA+YA K++
Sbjct: 396 EHYGCMIDLLGKAGKLDDAVKLLNEM-ECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVI 454
Query: 244 ELDP---GMYV-------------------------------GC-WIEIQNKIYEFV--- 265
LDP G Y GC WIE+ +I+ F+
Sbjct: 455 ALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGD 514
Query: 266 SNEELTSEVSDKLAEIEENMKELGFV--------------LNRSL-YQTKMKAVALGLIS 310
++ EVS KL ++ + +G+V + SL + ++ A+A GL++
Sbjct: 515 NSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMT 574
Query: 311 FPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P R+ K++ +CG H C+ S + R +V++DP +HHF+DGKCSC D +
Sbjct: 575 LPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 20/218 (9%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSC---LNPILLNVGTQA 68
I W ++ A K K ++ ELL + + Y+ +L SC + +L+ G
Sbjct: 128 ISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCG--- 184
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
+ K GL S V + LI++ ++ G+ +DA F +++ W II +
Sbjct: 185 ---IIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRS 241
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY-- 186
AL+LFK + T S L+A + L L L M+ HI ++
Sbjct: 242 DVALELFKRMKRAGFIAEQATLTSVLRACTGLAL------LELGMQAHVHIVKYDQDLIL 295
Query: 187 -SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ +V+ + G E+ L + + + W T++
Sbjct: 296 NNALVDMYCKCGSLEDALRVFNQMKERDV--ITWSTMI 331
>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 579
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/412 (27%), Positives = 202/412 (49%), Gaps = 60/412 (14%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
+++ I WN ++ + ++ EL +R++ + ++ +L +C LL +G
Sbjct: 172 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 231
Query: 66 TQAQAYMTK--RGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
QA ++ K + LI + N L+++ +CG ++DA F E++ ++W+ +IS
Sbjct: 232 MQAHVHIVKYDQDLI----LNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLA 287
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
+G+ EAL LF+ + T N T L A + GL+ + + F SM+++Y I P
Sbjct: 288 QNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGR 347
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
EHY M++ LG+AG ++ ++ + + + + WRTLL + RV +M LA+YA K++
Sbjct: 348 EHYGCMIDLLGKAGKLDDAVKLLNEM-ECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVI 406
Query: 244 ELDP---GMYV-------------------------------GC-WIEIQNKIYEFVSNE 268
LDP G Y GC WIE+ +I+ F+ +
Sbjct: 407 ALDPEDAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGD 466
Query: 269 E---LTSEVSDKLAEIEENMKELGFV--------------LNRSL-YQTKMKAVALGLIS 310
E EV+ KL ++ + +G+V + SL + ++ A+A GL++
Sbjct: 467 ESHPQIVEVNKKLNQLIHRLIGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMT 526
Query: 311 FPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
P R+ K++ +CG H C+ S + R +V++DP +HHF+DGKCSC
Sbjct: 527 LPSEKVIRIRKNLRICGDCHVFCKLASKLENRNIVIRDPIRYHHFQDGKCSC 578
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 6/181 (3%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
+ DS + +++ CL+ ++ G ++ G + N LIN+ + ++DA
Sbjct: 10 WADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQ 69
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F P++N +SWT +ISA +AL+L N T+ S L+A M
Sbjct: 70 LFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSD 129
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V R+ +E S +++ + G E+ L +V G ++W ++
Sbjct: 130 V----RMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGD--AIVWNSI 183
Query: 223 L 223
+
Sbjct: 184 I 184
>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 755
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 192/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W +L A + E +L + C +++ + +L++C + L G Q
Sbjct: 349 VSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGR 408
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G VGN L+ + +CG ++DA AF+ E++ +SW +I+ HG EA
Sbjct: 409 LIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEA 468
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L++F + T + T L A + GLV + F SM + + EHY+ M++
Sbjct: 469 LEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMID 528
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG E + +K + P + +W LL +SR+H + +L + A +K+ EL+P G
Sbjct: 529 LLGRAGRLAEAHDLMKDM-PFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAG 587
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEELTSEVSD 276
MYV WIE+QNK++ F + + + E
Sbjct: 588 MYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEK 647
Query: 277 KLAEIEE---NMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
A +E+ MK+ G+V + Y ++ AVA G+++ P G P R
Sbjct: 648 IYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIR 707
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
VIK++ +CG H+A +++S I R ++++D FHHF+ G CSC D +
Sbjct: 708 VIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 11/162 (6%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N L++ + GK+ +A F P ++ +SW ++S G EA LF R
Sbjct: 197 NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR--- 253
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
+ T+ + + YA G++ EA R+F +M E + ++ MV A + M +E E
Sbjct: 254 -DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQRRMMDEAKE 307
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
++P + W T+L G ++ AK D + + D
Sbjct: 308 LFN-MMPCRNVA-SWNTMLTGYAQAGMLEEAKAVFDTMPQKD 347
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 95 GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
G +++A F + PE+N++SW +++A + EA +LF R N ++ + L
Sbjct: 269 GMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR----NVASWNTML 324
Query: 155 KAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFI 206
YA G++ EA +F +M + + ++ M+ A + G EE L+
Sbjct: 325 TGYAQAGMLEEAKAVFDTMPQKDAVS-----WAAMLAAYSQGGCSEETLQLF 371
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 17/163 (10%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDK-QWRYT 143
N +I+ ++ G + A F PEK+++SW +++A V +G EA LF + +W
Sbjct: 135 NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVI 194
Query: 144 SMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE--HYSIMVEALGRAGMFEE 201
S N + + Y G + EA LF M P + ++IMV R G E
Sbjct: 195 SWN-----ALMSGYVQWGKMSEARELFDRM-------PGRDVVSWNIMVSGYARRGDMVE 242
Query: 202 VLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+ W ++ +G ++ A+ D + E
Sbjct: 243 ARRLFDAAPVRDV--FTWTAVVSGYAQNGMLEEARRVFDAMPE 283
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 191/410 (46%), Gaps = 58/410 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN L+ ++ Y L ++ + + ++ +C + L++G Q Y
Sbjct: 273 ISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGY 332
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G + + + L+++ S+CG I A F + +SWT II HGH EA
Sbjct: 333 VLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEA 392
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF++ + + N F + L A + +GLV EA+ F SM +VY + EHY+ + +
Sbjct: 393 VSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVAD 452
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPL--IWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
LGRAG EE +FI + ++ P +W TLL S VH +++LA+ +K+ +D
Sbjct: 453 LLGRAGKLEEAYDFISKM---RVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSEN 509
Query: 248 -GMYV-------------------------------GC-WIEIQNKIYEFVSNEE---LT 271
G YV C WIE++NK + FVS +
Sbjct: 510 MGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSM 569
Query: 272 SEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMP 316
+++ L + E M++ G+V + S ++ AVA G+I+ G
Sbjct: 570 DRINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTT 629
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV K++ +C H A +F+S I ERE++V+D FHHF G CSC D +
Sbjct: 630 IRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/125 (19%), Positives = 65/125 (52%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N ++ ++ YE ++ + D++++ +L + + G + Y
Sbjct: 172 VSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGY 231
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ ++G+ S +G+ L+++ ++ +I+D++ F ++S+SW +++ V +G +EA
Sbjct: 232 VIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEA 291
Query: 132 LDLFK 136
L LF+
Sbjct: 292 LRLFR 296
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L SC + L G ++ + G+ GN L+N+ S+ ID F+ P K+
Sbjct: 111 VLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKD 170
Query: 112 SLSWTFIISARVNHGHPSEALDLFKD 137
+S+ +I+ G +AL + ++
Sbjct: 171 VVSYNTVIAGYAQSGMYEDALRMVRE 196
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/390 (29%), Positives = 190/390 (48%), Gaps = 36/390 (9%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A +K + E+ ++Q D ++ +L+SC LN G Y
Sbjct: 466 VSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVY 525
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + +G LI++ +CG ++ A F EKN WT +++A G EA
Sbjct: 526 IEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEA 585
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+DL+ + + R + TF + L A + GLV E Y+ F + Y+I P+ HY MV+
Sbjct: 586 IDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVD 645
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGR G EE ++FI+ + P + IW +L+ + R H +++LA+ A +L+E+DP G
Sbjct: 646 LLGRVGHLEETVKFIERM-PIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNG 704
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNEELTSEVSD 276
+V G W IE ++EFV++ +++++
Sbjct: 705 AHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFVASNLVSADILC 764
Query: 277 KLAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFM 336
L +IE + + + + ++ AVA GLI+ P RV+ SV MC HS + +
Sbjct: 765 MLQDIERRLLVKQELSDTTSQHSERLAVAFGLINNQENSPIRVVNSVRMCRDCHSVMKLI 824
Query: 337 STIIERELVVKDPGSFHHFKDGKCSCKDAY 366
S +RE+V++D FH F DG CSCKD +
Sbjct: 825 SQAYDREIVIRDNYRFHRFTDGHCSCKDYW 854
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/186 (18%), Positives = 89/186 (47%), Gaps = 5/186 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ ++ Y EL ++++ D ++ +L++C++ ++G A+
Sbjct: 334 VSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAF 393
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G++ +GN L+++ ++CGK+D+A F+ P K++ SW ++ G +A
Sbjct: 394 IVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKA 453
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
D F + + ++ + + AY L E++ +F M+ +++P + ++
Sbjct: 454 RDFFN----KIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSS-NVKPDKTTLISLLS 508
Query: 192 ALGRAG 197
+ + G
Sbjct: 509 SCAKVG 514
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN LL+ +K + V E + +D + ++++C + +G++
Sbjct: 99 IIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGR 158
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + ++ N L+ + S+CGK+ + F+ ++ +SW +IS V G EA
Sbjct: 159 ILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREA 218
Query: 132 LDLFKD 137
LDLF +
Sbjct: 219 LDLFDE 224
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 73/169 (43%), Gaps = 35/169 (20%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + Y +L + + + D ++ ++++C L +G + Y
Sbjct: 200 ISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLY 259
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDA------------------------------D 101
+ L ++ NCL+++ S+CGK+D+A D
Sbjct: 260 IVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKID 319
Query: 102 LA---FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP 147
A F E++ +SWT ++S V G+ E+L+LF +Q R+ ++ P
Sbjct: 320 KARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELF--QQMRFENVIP 366
>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
Length = 755
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 192/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W +L A + E +L + C +++ + +L++C + L G Q
Sbjct: 349 VSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGR 408
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G VGN L+ + +CG ++DA AF+ E++ +SW +I+ HG EA
Sbjct: 409 LIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEA 468
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L++F + T + T L A + GLV + F SM + + EHY+ M++
Sbjct: 469 LEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMID 528
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG E + +K + P + +W LL +SR+H + +L + A +K+ EL+P G
Sbjct: 529 LLGRAGRLAEAHDLMKDM-PFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAG 587
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEELTSEVSD 276
MYV WIE+QNK++ F + + + E
Sbjct: 588 MYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEK 647
Query: 277 KLAEIEE---NMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
A +E+ MK+ G+V + Y ++ AVA G+++ P G P R
Sbjct: 648 IYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIR 707
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
VIK++ +CG H+A +++S I R ++++D FHHF+ G CSC D +
Sbjct: 708 VIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 11/162 (6%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N L++ + GK+ +A F P ++ +SW ++S G EA LF R
Sbjct: 197 NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR--- 253
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
+ T+ + + YA G++ EA R+F +M E + ++ MV A + M +E E
Sbjct: 254 -DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQRRMMDEAKE 307
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
++P + W T+L G ++ AK D + + D
Sbjct: 308 LFN-MMPCRNVA-SWNTMLTGYAQAGMLEEAKAVFDTMPQKD 347
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 95 GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
G +++A F + PE+N++SW +++A + EA +LF R N ++ + L
Sbjct: 269 GMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR----NVASWNTML 324
Query: 155 KAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFI 206
YA G++ EA +F +M + + ++ M+ A + G EE L+
Sbjct: 325 TGYAQAGMLEEAKAVFDTMPQKDAVS-----WAAMLAAYSQGGCSEETLQLF 371
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 15/162 (9%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I+ ++ G + A F PEK+++SW +++A V +G EA LF + T
Sbjct: 135 NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR----TE 190
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE--HYSIMVEALGRAGMFEEV 202
+ ++ + + Y G + EA LF M P + ++IMV R G E
Sbjct: 191 WDAISWNALMSGYVQWGKMSEARELFDRM-------PGRDVVSWNIMVSGYARRGDMVEA 243
Query: 203 LEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+ W ++ +G ++ A+ D + E
Sbjct: 244 RRLFDAAPVRDV--FTWTAVVSGYAQNGMLEEARRVFDAMPE 283
>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
Length = 724
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 191/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ +K E L + + ++ +LN+C + ++G Q AY
Sbjct: 318 VSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAY 377
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M + G S + + L+++ S+CG I++A F+ P+ + SWT ++ HG +A
Sbjct: 378 MVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKA 437
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L F+ T + F L A A GLV + F S++E + + + +HY+ +++
Sbjct: 438 LHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIID 497
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DPG 248
L RAG F E E I +P K IW LL R+HG+++LAK A L E+ +P
Sbjct: 498 LLARAGQFTEA-ESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPA 556
Query: 249 MYVG--------------------------------CWIEIQNKIYEFV---SNEELTSE 273
YV WIEI+ +++ F ++ + E
Sbjct: 557 TYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKE 616
Query: 274 VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
+ + L+E+ + MKE+G+V + + Y ++ AVA G+IS P G P +
Sbjct: 617 ILEYLSELSKRMKEVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPSGTPIK 676
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V K++ C H+A +F+S I R+++V+D FH F+ G CSCKD +
Sbjct: 677 VFKNLRTCVDCHNAIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 3/183 (1%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L++G + ++ + GL S V L+++ +CG I++A F E++ +SWT +I
Sbjct: 267 LHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHT 326
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
+ +G E LF+ N TF L A A + ++ M V +
Sbjct: 327 YLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRV-GFDS 385
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
S +V + G E + + L W +LL+ HG A + +
Sbjct: 386 FSSAASALVHMYSKCGDIENAKSVFEILPQPDL--FSWTSLLVGYAQHGQHDKALHFFEL 443
Query: 242 LLE 244
LL+
Sbjct: 444 LLK 446
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 33/130 (25%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK------ 105
+L CL L G Q A++ G I + N L+++ ++CG + DA+ F
Sbjct: 125 LLKFCLKQRALKEGKQVHAHIKTSGSIG-LYISNRLLDMYAKCGSLVDAEKVFDEMVHRD 183
Query: 106 -------------------------STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQW 140
P +++ SWT IIS V H P EAL+L++ Q
Sbjct: 184 LCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQK 243
Query: 141 R-YTSMNPTT 149
Y+ N T
Sbjct: 244 HDYSKSNKCT 253
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 196/408 (48%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ ++ Y+ L +Q D +++ +L +C L +G + Y
Sbjct: 229 VSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTY 288
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + + VGN LI++ +CG ++ A F + P+++ +WT ++ +G EA
Sbjct: 289 IDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEA 348
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L++F + + T+ L A G+V E + F SM + IEP+ HY MV+
Sbjct: 349 LNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVD 408
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG--- 248
LG+AG +E E IK + P K ++W LL + R+H D ++A+ A++++LEL+P
Sbjct: 409 LLGKAGHLKEAHEIIKNM-PMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGA 467
Query: 249 -------MYVGC--W-----------------------IEIQNKIYEFVSNEE---LTSE 273
+Y C W IE+ ++EFV+ ++ T E
Sbjct: 468 VYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKE 527
Query: 274 VSDKLAEIEENMKELGFVLNRS--------------LYQTKMK-AVALGLISFPHGMPTR 318
+ KL ++ ++K G+ N S +Y+ K A+A GLI+ G+ R
Sbjct: 528 IYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAVYRHSEKLAIAFGLINSGPGVTIR 587
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ MC H + +S + +RE++V+D FHHF+ G CSCKD +
Sbjct: 588 IVKNLRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 85/209 (40%), Gaps = 32/209 (15%)
Query: 14 WNLLLK-----ACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQA 68
WN++ K AC K + E+LER D Y+ + + L +G +
Sbjct: 82 WNIMFKGYSRIACPKL-GVSLYLEMLERNVK----PDCYTYPFLFKGFTRSVALQLGREL 136
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDA----DLAFKSTP-------------EKN 111
++ K GL S+ N LIN+ S CG ID A D++ KS +K+
Sbjct: 137 HCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKD 196
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
+SWT I++ VN G A F R + ++ + + Y + EA LF
Sbjct: 197 VISWTAIVTGFVNTGQVDAARKYFHKMPER----DHVSWTAMIDGYLRLNCYKEALMLFR 252
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
M + I+P E ++ A + G E
Sbjct: 253 EM-QTSKIKPDEFTMVSVLTACAQLGALE 280
>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 790
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 182/372 (48%), Gaps = 55/372 (14%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y+ + SC G Q A + K G S + GN LI + ++CG +++A F++
Sbjct: 418 YAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRT 477
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
P +S+SW +I+A HGH +EA+D++++ + + T + L A + GLV +
Sbjct: 478 MPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQG 537
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226
+ F SME VY I P +HY+ +++ L R+G F + I+ + P K IW LL
Sbjct: 538 RKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESL-PFKPTAEIWEALLSGC 596
Query: 227 RVHGDMKLAKYALDKLLELDP---GMY-------------------------------VG 252
RVHG+M+L A DKL L P G Y V
Sbjct: 597 RVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVA 656
Query: 253 C-WIEIQNKIYEFVSNEELTSE---VSDKLAEIEENMKELGFVLNRSLY----------- 297
C WIE++ +++ F+ ++ E V L ++ + M+ LG+V + S
Sbjct: 657 CSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKE 716
Query: 298 -----QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
++ AVA GL+ P G R+ K++ CG H+ RF+S +++R+++++D F
Sbjct: 717 DMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRF 776
Query: 353 HHFKDGKCSCKD 364
HHF++G+CSC +
Sbjct: 777 HHFRNGECSCGN 788
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 89/188 (47%), Gaps = 6/188 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N ++ + Y+ E++ R+ +D ++ ++ +C LL +G Q AY
Sbjct: 252 VAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAY 311
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ +R S N L+++ +CGK D+A F+ P K+ +SW ++S V+ GH EA
Sbjct: 312 VLRREDFSFH-FDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEA 370
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+FK+ + + N ++ + A G E +LF M+ EP + +S ++
Sbjct: 371 KLIFKEMKEK----NILSWMIMISGLAENGFGEEGLKLFSCMKR-EGFEPCDYAFSGAIK 425
Query: 192 ALGRAGMF 199
+ G +
Sbjct: 426 SCAVLGAY 433
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 183/371 (49%), Gaps = 55/371 (14%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ +L+SC L++G Y K G + V LI++ ++CG +DDA F++
Sbjct: 234 TLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENM 293
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
K++ +W+ +I A NHG ++ +F+ + + TF L A + GLV E
Sbjct: 294 RYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGR 353
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
F M + I PS +HY MV+ LGRAG E+ EFI + P P++WR LL +
Sbjct: 354 EYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKL-PISPTPMLWRILLAACS 412
Query: 228 VHGDMKLAKYALDKLLELDP---GMYV-------------------------------GC 253
H +++LA+ +++LELD G YV GC
Sbjct: 413 SHNNLELAEKVSERILELDDSHGGDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGC 472
Query: 254 -WIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKEL---GFVLNRSL------------- 296
IE+ N ++EF S + + S + ++E +KEL G+V + S+
Sbjct: 473 SSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLAGYVPDTSMVVHADMGDQEKEI 532
Query: 297 ---YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
Y ++ A+A GL++ P G RV+K++ +C HSA + +S I R++V++D FH
Sbjct: 533 TLRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVCRDCHSAAKLISLIFGRKVVLRDVQRFH 592
Query: 354 HFKDGKCSCKD 364
HF+DGKCSC+D
Sbjct: 593 HFEDGKCSCRD 603
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+Y+ +L +C L G Q K G+ + V LIN+ + C +D A F
Sbjct: 130 DNYTFPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVF 189
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
E + + +I+ P+EAL LF++ Q + N T S L + AL+G
Sbjct: 190 DRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLG 246
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 120/413 (29%), Positives = 199/413 (48%), Gaps = 66/413 (15%)
Query: 14 WNLLLKA---CIKAKD-YEMVHELLERIQLC-CGFIDSYSICDILNSCLNPILLNVGTQA 68
WN L+ A C K K+ E+ HEL QL D ++ L++C +++G
Sbjct: 337 WNALISAYEQCGKPKEALELFHEL----QLSKTAKPDEVTLVSTLSACAQLGAMDLGGWI 392
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
Y+ K+G+ + + LI++ +CG + A + F S K+ W+ +I+ HGH
Sbjct: 393 HVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHG 452
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
+A+ LF Q N TF + L A + +GLV E F ME VY + P +HY+
Sbjct: 453 KDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYAC 512
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248
MV+ LGRAG+ EE +E I+ + P +W LL + +H ++ LA+ A +L+EL+PG
Sbjct: 513 MVDILGRAGLLEEAVELIEKM-PMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPG 571
Query: 249 MY------------VGCW-----------------------IEIQNKIYEFV---SNEEL 270
+ G W IE+ ++EF+ ++
Sbjct: 572 NHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPS 631
Query: 271 TSEVSDKLAEIEENMKELGFVLNRS-----------------LYQTKMKAVALGLISFPH 313
++ KL EI ++ +G+V N+S L+ K+ A+A GLIS
Sbjct: 632 AKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKL-AIAFGLISTGQ 690
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P R++K++ +CG HS + +S + +RE++++D FHHF++G CSC D +
Sbjct: 691 SQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/172 (19%), Positives = 74/172 (43%), Gaps = 4/172 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A ++ E EL + ++ + ++ +L++C G +Y
Sbjct: 203 VSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSY 262
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + + N ++++ ++CG ++DA F PEK+ +SWT ++ G A
Sbjct: 263 IERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAA 322
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
+F + + + + + AY G EA LF ++ +P E
Sbjct: 323 QGIFD----AMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDE 370
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 14 WNLLLKACIKAKD-YEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN L++A + + ++ + L + F D ++ ++ + L G +
Sbjct: 103 WNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMV 162
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K L S + N LI+ ++CG++ F + P ++ +SW +I+A V G P EAL
Sbjct: 163 IKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEAL 222
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYA 158
+LF++ + + N T L A A
Sbjct: 223 ELFQEMETQNVKPNGITMVGVLSACA 248
>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
Length = 957
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 193/378 (51%), Gaps = 59/378 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS S+ IL++ + L G + ++ ++G + ++ + L+++ +RCG ++ + F
Sbjct: 583 DSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVF 642
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
K+ + WT +I+A HG A+DLF+ + + + F + L A + GL+
Sbjct: 643 NFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMN 702
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPL--IWRTL 222
E R SM+ Y +EP EHY+ +V+ LGRA EE +F+KG+ ++ P +W L
Sbjct: 703 EGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGM---EVEPTAEVWCAL 759
Query: 223 LLSSRVHGDMKLAKYALDKLLELD---PGMYV---------------------------- 251
L + ++H + +L + A KLLE+D PG YV
Sbjct: 760 LGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLK 819
Query: 252 ---GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELG-------FVLNRSLY 297
GC WIE+ NK++ F++ ++ + E+ KL++I E + + G FVL+ +
Sbjct: 820 KNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKE 879
Query: 298 QTKMK---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
+ K++ A+A G+++ P G R+ K++ +CG H+ C+ +S ERELV++D
Sbjct: 880 EEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRD 939
Query: 349 PGSFHHFKDGKCSCKDAY 366
FHHFK G CSC D +
Sbjct: 940 ANRFHHFKGGVCSCGDVW 957
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 112/276 (40%), Gaps = 49/276 (17%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ A + + EL +++ +D+ + IL +C G +
Sbjct: 148 WNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAI 207
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK-NSLSWTFIISARVNHGHPSEAL 132
K G +S V N ++ + ++C ++ A F PEK + +SW +ISA ++G EAL
Sbjct: 208 KEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEAL 267
Query: 133 DLFKDKQWRYTSMNPTTFRSALKA-----------------------------------Y 157
LF + Q + N TF +AL+A Y
Sbjct: 268 RLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMY 327
Query: 158 ALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP- 216
A G +GEA +F +M++ I ++ M+ + G++ E L+F + P
Sbjct: 328 ARFGKMGEAANIFYNMDDWDTIS-----WNSMLSGFVQNGLYHEALQFYHEMRDAGQKPD 382
Query: 217 ------LIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+I + + +HG M++ YA+ L+ D
Sbjct: 383 LVAVISIIAASARSGNTLHG-MQIHAYAMKNGLDSD 417
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN +L ++ Y + ++ D ++ I+ + G Q AY
Sbjct: 349 ISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAY 408
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K GL S VGN L+++ ++ + D F P+K+ +SWT II+ +G S A
Sbjct: 409 AMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRA 468
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
L+LF++ Q ++ S L A + + L+
Sbjct: 469 LELFREVQLEGIDLDVMMISSILLACSGLKLI 500
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + + EL +QL +D I IL +C L++ + +Y
Sbjct: 450 VSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSY 509
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ ++GL S + N ++++ CG +D A F+ K+ +SWT +IS V++G +EA
Sbjct: 510 IIRKGL-SDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEA 568
Query: 132 LDLF 135
L+LF
Sbjct: 569 LELF 572
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYM-TKRGLISHPAVGNCLININSRCGKIDDADLA 103
++YS +L C + L+ G Q A+M T L + + L+ + +CG + DA+
Sbjct: 79 EAYS--SVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKL 136
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
F P K +W +I A V +G P +L+L+++ + ++ TF LKA L+
Sbjct: 137 FDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLL 193
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 54/126 (42%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A L +Q ++Y+ L +C + + G A
Sbjct: 248 VSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHAT 307
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + V N LI + +R GK+ +A F + + +++SW ++S V +G EA
Sbjct: 308 VLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEA 367
Query: 132 LDLFKD 137
L + +
Sbjct: 368 LQFYHE 373
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 179/375 (47%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + + +L++C + L +G Q AY+ + G VG+ L+++ ++ G ++DA F
Sbjct: 141 DRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVF 200
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P++N +SW II+ HG ++A+ LF+ N +F L A + GLV
Sbjct: 201 DKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVN 260
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E F M + Y I P HY+ M++ LGRAG +E FI G+ P + +W LL
Sbjct: 261 EGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGM-PVEPDVSVWGALLG 319
Query: 225 SSRVHGDMKLAKYALDKLLELD---PGMYV------------------------------ 251
+ R+HG+ +LAK + LL ++ G+YV
Sbjct: 320 ACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQ 379
Query: 252 --GCWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL---------- 296
WIE++ ++ FV+ E E+ + L + MK G+V N++
Sbjct: 380 PGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKAAGYVPNKNFVLQDVEDDEK 439
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ ++ A+A G+I+ G RV K++ +CG H+ +F+S R++VV+D
Sbjct: 440 ELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCHTVIKFISLNFTRKIVVRDANR 499
Query: 352 FHHFKDGKCSCKDAY 366
FHHFKDG+CSC D +
Sbjct: 500 FHHFKDGRCSCGDYW 514
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ +++ ++ +C + L G QA Y+ K G S V L+++ +RCG ++DA F
Sbjct: 9 NQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVF 68
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
E+++ +W +I+ + +AL LF + + + ++ + + YA G
Sbjct: 69 DKMSERSTRTWNAMITGHAQNRDMKKALKLF----YEMSERDVVSWTAVIAGYAQNGYGD 124
Query: 165 EAYRLFLSMEEV 176
E+ +F M +
Sbjct: 125 ESLNVFNQMRKT 136
>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 623
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 116/408 (28%), Positives = 191/408 (46%), Gaps = 56/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + V EL + + D ++ +L+SC N +VG + +
Sbjct: 219 ISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFK 278
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G S+P + N LIN+ +RCG + A F PE+ +SWT II HGH A
Sbjct: 279 IQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIA 338
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LFK+ + T F L A + GL + F M+ Y +EP EHYS MV+
Sbjct: 339 VQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVD 398
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG +E I+ + P K +W LL + ++H +++LA+ A ++++EL+P G
Sbjct: 399 LLGRAGRLKEAQTLIESM-PIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIG 457
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSN--------- 267
YV GC ++E++ +++ F+
Sbjct: 458 YYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDE 517
Query: 268 -----EELTSEVSDKLAEIEENMKEL----GFVLNRSLYQTKMKAVALGLISFPHGMPTR 318
EEL + + + + E++ +E GF R ++ AVA GL++ G
Sbjct: 518 IYRVLEELEAIIMQEFGKPEKDNREESNKDGFT--RVGVHSEKLAVAFGLLNTTTGAEVV 575
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+IK++ +C H + +S I+ R+L V+D FHHF++G CSCKD +
Sbjct: 576 IIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 623
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
++S ++ ++ +C++PI L +G+ K G S +V NC I + +CG ++ A
Sbjct: 150 VNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKL 209
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
F P K +SW ++S +G + L+L+++ +P T L + A +G
Sbjct: 210 FDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLG 267
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 2/152 (1%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
++ + PWN L+ K + L ++ ++++ L SC L +G+
Sbjct: 10 MNALSTPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGS 69
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST--PEKNSLSWTFIISARVN 124
Q +TK G + P V LI++ + +D+A F+ K ++ + ++S V+
Sbjct: 70 QFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVS 129
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ SEA+ LF+ +N T + A
Sbjct: 130 NSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPA 161
>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
Length = 630
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 117/408 (28%), Positives = 193/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ L ++ +E V L + Q + +++ IL++C + L+ GTQ A
Sbjct: 224 VTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAV 283
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + V L+++ ++CG+I+ + F EKN + W +I++ H H EA
Sbjct: 284 IVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEA 343
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF+ Q N T+ S L A + GLV E F + EP+ HYS MV+
Sbjct: 344 MILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVD 403
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGR+G +E + + + P + +W +LL SSR+H +++LA+ A ++L L+P G
Sbjct: 404 VLGRSGKTDEAWKLLDKM-PFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGG 462
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEEL---TSE 273
+V WIE + KI+ FV+ E ++
Sbjct: 463 NHVLLSNVYAASGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITD 522
Query: 274 VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
V +KL EI M+++ N + ++ A A GLIS P +P
Sbjct: 523 VYNKLEEIYHEMRKISHRANTQCDLHDVHADQKEELLKHHSEKLAFAFGLISLPPNIPIT 582
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +CG HS + +S I ER+++V+D FHHFKDG CSC D +
Sbjct: 583 IYKNLRICGDCHSFMKIVSCITERQVIVRDINRFHHFKDGSCSCGDFW 630
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 67/158 (42%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ ++ +L R+ + +++ L +C + Q
Sbjct: 123 ISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIECKQLHTI 182
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K L S VG +++ ++C I DA F++ PEK S++W+ + + V +G E
Sbjct: 183 AIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEV 242
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
L LF+ Q + T S L A + L+ E ++
Sbjct: 243 LCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQV 280
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%)
Query: 26 DYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGN 85
++ +VH+ +++ ID +++ ++L C L VG GL++ N
Sbjct: 36 NHRIVHKDKNLVRVERDLIDVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCN 95
Query: 86 CLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM 145
LIN+ ++CG+ D A F + ++ +SW +I+ ++ EAL LF T M
Sbjct: 96 ILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQM 155
Query: 146 NPTTFRSALKAYA 158
T S L A A
Sbjct: 156 TEFTLSSTLCACA 168
>gi|413937111|gb|AFW71662.1| hypothetical protein ZEAMMB73_019211 [Zea mays]
Length = 798
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 139/248 (56%), Gaps = 1/248 (0%)
Query: 1 LKLCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
LKLC +S+ ++ W L+++ + + + LL IQ C +D ++ IL+SC
Sbjct: 551 LKLCLALSNRDVSWGTLVESLSQVDHHVGIVNLLHVIQRCGANLDCHTARLILSSCGKLG 610
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
LL G QA AYMTKRGL S + LI++ S G + A AF P K++ SW I++
Sbjct: 611 LLEEGLQAHAYMTKRGLASSACTNSYLIDMYSSVGSLRHASDAFNYMPAKDASSWASIVA 670
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
A V +G P A+ LF + + P F S LKA A GLV EA+R F+SM EVY I+
Sbjct: 671 ANVENGCPETAIRLFSQMEEKCRP-TPEAFLSVLKACARTGLVSEAFRFFVSMTEVYKIQ 729
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
PSEEHYS M++ L RAGMF+E FI +VP + W L +++ +G+ K K A D
Sbjct: 730 PSEEHYSHMIQVLSRAGMFKEAEHFIDSVVPSESGTSAWSLLSAAAQQNGNDKTVKLAGD 789
Query: 241 KLLELDPG 248
+L L G
Sbjct: 790 RLARLPGG 797
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%)
Query: 42 GFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD 101
G +D + + L SC + + L G A + K + V + L+++ ++CG +++++
Sbjct: 391 GKLDQFIVASSLKSCASGLDLLAGRMLHACILKSDMNPDSFVTSSLLDMYAKCGALEESN 450
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
L F T + W+ IS +G A+ LF+ Q + N T+ + L A +G
Sbjct: 451 LLFSRTKNPGTAEWSAAISGNCLNGQYGRAVQLFRRMQSEHVQPNEFTYTAILTACMALG 510
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA-VGNCLININSRCGKIDDADLA 103
D++ L +C L +G Q + K G + V N L+ + S C + A+
Sbjct: 114 DAFVFSVALRACAAVGSLRLGRQLHGAVAKLGYVGVDLFVANGLVTMYSSCQSLPCAEKV 173
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F S + +SWT ++SA +G +EAL LF + + + T AL+A + +G V
Sbjct: 174 FGSIASPDLVSWTSMLSAYTENGRDAEALVLFMEMARGGVACDAFTLSVALRAASSLGHV 233
Query: 164 G 164
G
Sbjct: 234 G 234
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 68/170 (40%), Gaps = 8/170 (4%)
Query: 5 SLISDVEIPWNLLLKACIK-AKDYEMVHELLE--RIQLCCGFIDSYSICDILN--SCLNP 59
S+ S + W +L A + +D E + +E R + C D++++ L S L
Sbjct: 176 SIASPDLVSWTSMLSAYTENGRDAEALVLFMEMARGGVAC---DAFTLSVALRAASSLGH 232
Query: 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
+ + +G Q M K GL+ + NCLI R G++ F K+ +SW +I
Sbjct: 233 VGVGLGHQLHCCMIKMGLVGKEFLDNCLIGFYGRSGELQLMRNVFDEMNGKDLVSWNTVI 292
Query: 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
+ EA F+ + + + T S L+ G G +
Sbjct: 293 QCYAENLCHEEASAHFRAMMFEFAECDEFTLGSILQVVTRTGAFGHGMEI 342
>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Cucumis sativus]
Length = 678
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 121/416 (29%), Positives = 199/416 (47%), Gaps = 57/416 (13%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDS-YSICDILNSCLNPILLN 63
SL + + WN L+ + + E V L ++ L GF + ++ + +C + L
Sbjct: 266 SLAAKNVVSWNALIAGHARKGEGEHVMRLFLQM-LRQGFEPTHFTYSSVFTACASSGSLE 324
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G A++ K G +GN LI++ ++ G I DA F+ +++ +SW IIS
Sbjct: 325 QGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYA 384
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
HG +EAL LF+ N TF S L A + GL+ E F M++ + IE
Sbjct: 385 QHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQV 443
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
H+ +V+ LGRAG E +FI+ + P K +W LL S R+H +M L YA +++
Sbjct: 444 AHHVTVVDLLGRAGRLNEANKFIEEM-PIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIF 502
Query: 244 ELDP---GMYV-------------------------------GC-WIEIQNKIYEFVSNE 268
ELDP G +V C W+EI+N+++ FV+N+
Sbjct: 503 ELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVAND 562
Query: 269 E---LTSEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLIS 310
+ + E+ +I +KE+G+V + S Y ++ A+A ++
Sbjct: 563 DSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLK 622
Query: 311 FPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P G+ R+ K++ +CG HSA +F S ++ RE++V+D FHHF G CSC+D +
Sbjct: 623 TPPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+LN C L G A++ + N ++N+ ++CG +++A F P K+
Sbjct: 111 MLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKD 170
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+SWT +IS G SEAL LF N T S LKA
Sbjct: 171 MVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA 215
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Q A+ K G + VG+ L+++ +R + +A + F S KN +SW +I+
Sbjct: 225 GRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHAR 284
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTF 150
G + LF Q PT F
Sbjct: 285 KGEGEHVMRLF--LQMLRQGFEPTHF 308
>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 771
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 106/407 (26%), Positives = 192/407 (47%), Gaps = 53/407 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN+++ C + +++E + + D S + ++ + L GT ++
Sbjct: 366 VTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSH 425
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + + + + L+ + +CG + DA F+ T E N + WT +I+ HG +EA
Sbjct: 426 VLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEA 485
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF++ TF S L A + G + + ++ F SM V++I+P EHY+ MV+
Sbjct: 486 IKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVD 545
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DPG 248
LGR G EE FI+ + P + L+W LL + H ++++ + ++L +L +PG
Sbjct: 546 LLGRVGRLEEACRFIESM-PFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPG 604
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTSE 273
Y+ GC WI+++N+ + F +N+ T E
Sbjct: 605 NYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQE 664
Query: 274 VSDKLAEIEENMKELGFVLNRSLYQTKMK--------------AVALGLISFPHGMPTRV 319
+ L +++E +K G+V ++ A+A GL+ P G P R+
Sbjct: 665 IYGMLQKLKELIKRRGYVAETQFATNSVEGSEEQSLWCHSEKLALAFGLLVLPPGSPVRI 724
Query: 320 IKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
K++ CG H+ +F S I +RE++V+D FH F +G CSC D +
Sbjct: 725 KKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW 771
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 58/126 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ ++ R++ + + ++ IL +C + LL+ G Q A
Sbjct: 166 VTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHAL 225
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K ++ P V L+++ ++CG + A+ F P +N +SW +I V + A
Sbjct: 226 IHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRA 285
Query: 132 LDLFKD 137
+ +F++
Sbjct: 286 IGVFRE 291
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ +K K Y + + L G D SI +L++C + L+ G Q
Sbjct: 267 VSWNSMIVGFVKNKLYGRAIGVFREV-LSLG-PDQVSISSVLSACAGLVELDFGKQVHGS 324
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
+ KRGL+ V N L+++ +CG +DA F +++ ++W +I
Sbjct: 325 IVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMI 372
>gi|242053821|ref|XP_002456056.1| hypothetical protein SORBIDRAFT_03g029620 [Sorghum bicolor]
gi|241928031|gb|EES01176.1| hypothetical protein SORBIDRAFT_03g029620 [Sorghum bicolor]
Length = 592
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 176/374 (47%), Gaps = 55/374 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
++ +++ I+ C L +G Q A TK L + P VG+ L+++ S+CG ++ A
Sbjct: 219 VNDFTVSSIIRVCAAATLFELGAQVHARATKTALDASPFVGSSLVSVYSKCGLVECAYRV 278
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F PEKN W ++ A HGH + A + F + Q N TF + A + GLV
Sbjct: 279 FNEAPEKNLGIWNAVLIASAQHGHTAAAFERFMEMQNAGFRPNHITFLCLVTACSHAGLV 338
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E R F M++ Y IEP EHY+ MV+ LGR G +E L+ I+ + P + +W LL
Sbjct: 339 DEGKRYFSLMKD-YGIEPQAEHYASMVDLLGRVGRIKEALDLIESM-PMEPPESVWGALL 396
Query: 224 LSSRVHGDMKLAKYALDKLLELD----------------PGMYVGC-------------- 253
+S R+ D A+ A +L E G ++
Sbjct: 397 MSCRIFKDADTAEIAAKRLFETGSRSSGAHMLLSSTYAAAGRHIDAALARKAMRDAGVRK 456
Query: 254 -----WIEIQNKIYEFVSN---EELTSEVSDKLAEIEENMKELGFVLNRSL--------- 296
W+E +++ FVSN + + E+ L ++ E M+ G+V + S
Sbjct: 457 ETGLSWLEAAGEVHTFVSNCRRHQRSEEIYKVLEKVGEKMEAAGYVADTSAVVKDVDGDE 516
Query: 297 ------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
Y ++ A+ LGL+ P G+P RV+K++ +C HSA ++++ R +V++D
Sbjct: 517 KRATVRYHSERLAIGLGLLIVPQGVPIRVMKNLRVCDDCHSAIKYLTKCTGRVVVLRDNR 576
Query: 351 SFHHFKDGKCSCKD 364
FH F+DG CSC D
Sbjct: 577 RFHRFEDGVCSCGD 590
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 69/163 (42%), Gaps = 6/163 (3%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
VG+ ++++ ++CG + DA F PE+N +SW+ +I + G A+ +F+
Sbjct: 157 VGSAILDMYAKCGHLADARRLFDEMPERNVVSWSALICGYADAGMHPAAMGIFRLALEEA 216
Query: 143 TSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV 202
+N T S ++ A L ++ + ++ S S +V + G+ E
Sbjct: 217 VPVNDFTVSSIIRVCAAATLFELGAQVHARATKTA-LDASPFVGSSLVSVYSKCGLVECA 275
Query: 203 LEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
L IW +L++S HG A ++ +E+
Sbjct: 276 YRVFNEAPEKNLG--IWNAVLIASAQHGHTAA---AFERFMEM 313
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 198/411 (48%), Gaps = 59/411 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN+++ Y+ L ++Q + + IL +C L++G AY
Sbjct: 331 ISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAY 390
Query: 72 MTKRGL-ISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K+ L +++ ++ LI++ ++CG I+ A F K+ SW +IS HGH +
Sbjct: 391 IDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANM 450
Query: 131 ALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
AL+LF+ Q R P TF L A + GLV + F SM E Y I P +HY
Sbjct: 451 ALELFR--QMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGC 508
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL--- 245
M++ LGRAG+F+E +K + K IW +LL + RVHG+++L ++A L EL
Sbjct: 509 MIDLLGRAGLFDEAEALMKNM-EMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPE 567
Query: 246 DPGMYV---------GCW-----------------------IEIQNKIYEFVSNEELTSE 273
+PG YV G W IE+ + ++EF+ +++ +
Sbjct: 568 NPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQ 627
Query: 274 VSD---KLAEIEENMKELGFVLNRS--LY-------------QTKMKAVALGLISFPHGM 315
D L EI++ +++ G V + S LY ++ A+A GLIS
Sbjct: 628 SQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPET 687
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +CG HSA + +S I RE++ +D FHHFKDG CSC D +
Sbjct: 688 TIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 107/245 (43%), Gaps = 6/245 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ ++ +E + ++ + ++ +L++C L +G +++
Sbjct: 230 VSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSW 289
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ GL S+ + N LI++ S+CG +D A F+ EK+ +SW +I + EA
Sbjct: 290 IEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEA 349
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF+ Q N TF S L A A +G + + +++ + + ++ +++
Sbjct: 350 LALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLID 409
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLA----KYALDKLLELDP 247
+ G E + G+ P L W ++ +HG +A + D+ E D
Sbjct: 410 MYAKCGNIEAAKQVFAGMKPKSLGS--WNAMISGLAMHGHANMALELFRQMRDEGFEPDD 467
Query: 248 GMYVG 252
+VG
Sbjct: 468 ITFVG 472
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 90/199 (45%), Gaps = 9/199 (4%)
Query: 6 LISDVEIP----WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL 61
L +E P WN +++ + + R+ LC +SY+ +L SC
Sbjct: 88 LFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGA 147
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
G Q ++ K GL S P V LIN+ ++ G++ A+L F + ++++S+T +I+
Sbjct: 148 TQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITG 207
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
G +A LF++ R + ++ + + YA G EA F M+ ++ P
Sbjct: 208 YTLRGCLDDARRLFEEIPVR----DAVSWNAMIAGYAQSGRFEEALAFFQEMKRA-NVAP 262
Query: 182 SEEHYSIMVEALGRAGMFE 200
+E ++ A ++G E
Sbjct: 263 NESTMVTVLSACAQSGSLE 281
>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 721
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 120/379 (31%), Positives = 182/379 (48%), Gaps = 58/379 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHP-AVGNCLININSRCGKIDDADLA 103
D S + ++C N + G Q K + S+ +V N LI++ + G + DA
Sbjct: 344 DDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRV 403
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F PE N++S+ +I HGH +EAL L++ + N TF + L A A G V
Sbjct: 404 FDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKV 463
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E + F +M+E + IEP EHYS M++ LGRAG EE FI + P K + W LL
Sbjct: 464 DEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAM-PYKPGSVAWAALL 522
Query: 224 LSSRVHGDMKLAKYALDKLLELDP----------GMYV---------------------- 251
+ R H +M LA+ A +L+ + P MY
Sbjct: 523 GACRKHKNMALAERAAKELMVMQPLAATPYVMLANMYADAGKWEEMASVRKSMRGKRIRK 582
Query: 252 --GC-WIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMK--- 302
GC WIE++ K + FV+ + + EV++ L E+ + MK++G+V+++ K
Sbjct: 583 KPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAG 642
Query: 303 ---------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
AVA GL+S G V+K++ +CG H+A +FMS + RE++V+
Sbjct: 643 EGEEEMRLGHHSEKLAVAFGLMSTRDGEEIVVVKNLRICGDCHNAIKFMSAVAGREIIVR 702
Query: 348 DPGSFHHFKDGKCSCKDAY 366
D FH FKDGKCSC D +
Sbjct: 703 DNLRFHCFKDGKCSCGDYW 721
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
E+ WN ++ A + K+ L + + ID +++ +LN+ + L G Q
Sbjct: 205 EVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHG 264
Query: 71 YMTKRGLISHPAVGNCLININSRCGKID---DADLAFKSTPEKNSLSWTFIISA-RVNHG 126
+ K G + VG+ LI+ S+CG D D++ F+ + + W +IS +N
Sbjct: 265 KLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEE 324
Query: 127 HPSEALDLFKDKQ 139
H EA+ F+ Q
Sbjct: 325 HSEEAVKSFRQMQ 337
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N L+ A++ L +R++ +D +++ ++ +C + + ++ Q +
Sbjct: 106 VSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTLSGLIAACCDRV--DLIKQLHCF 163
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE-KNSLSWTFIISARVNHGHPSE 130
G S+ +V N + S+ G + +A F ++ +SW +I A H ++
Sbjct: 164 AVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAK 223
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKA 156
AL L+K+ ++ ++ T S L A
Sbjct: 224 ALALYKEMIFKGFKIDMFTLASVLNA 249
>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
Length = 751
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 178/373 (47%), Gaps = 54/373 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ +++SC N L G Q GL+ + V N L+ + +CG I+DA F
Sbjct: 378 DDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLF 437
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ +SWT +++ G E +DLF+ + TF L A + GLV
Sbjct: 438 DEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVE 497
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ F SM++ + I P ++HY+ M++ R+G F+E EFIK + P W TLL
Sbjct: 498 KGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQM-PHSPDAFGWATLLS 556
Query: 225 SSRVHGDMKLAKYALDKLLELD---PGMYV------------------------------ 251
S R+ G+M++ K+A + LLE D P YV
Sbjct: 557 SCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKE 616
Query: 252 -GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS----------- 295
GC WI+ +NK++ F ++++ +S + +KL + M E G+ + S
Sbjct: 617 PGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADK 676
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ ++ A+A GLI P MP R++K++ +C H+A +F+S I R+++V+D
Sbjct: 677 VHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVR 736
Query: 352 FHHFKDGKCSCKD 364
FH F DG CSC D
Sbjct: 737 FHKFSDGTCSCGD 749
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
ID Y+ IL +C G Q AY+T+ + VG+ L+++ S+C I A+
Sbjct: 276 IDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAV 335
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
F+ +N +SWT +I + EA+ F + Q
Sbjct: 336 FRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQ 371
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N LI RC I+DA F+ +++S++WT +++ +G EALD+F+ +
Sbjct: 216 NTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVG 275
Query: 145 MNPTTFRSALKA 156
++ TF S L A
Sbjct: 276 IDQYTFGSILTA 287
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 191/376 (50%), Gaps = 55/376 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
++Y++ +L+ + L+ G Q A + +S +VGN LI + SR G I DA F
Sbjct: 411 NNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIF 470
Query: 105 KST-PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
+++L+WT +I + HG +EA++LF+ + T+ L A +GLV
Sbjct: 471 NHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLV 530
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ F M+ V++IEP+ HY+ M++ LGRAG+ EE FI+ + P + + W +LL
Sbjct: 531 EQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNM-PIEPDVVAWGSLL 589
Query: 224 LSSRVHGDMKLAKYALDKLLELDP---GMYVG---------------------------- 252
S RVH + LAK A +KLL +DP G Y+
Sbjct: 590 SSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKK 649
Query: 253 ----CWIEIQNKIYEFVSNEELTSE---VSDKLAEIEENMKELGFV--LNRSLYQTKMK- 302
W++I+NK++ F + L + + +++I + +K++GF+ N L+ + +
Sbjct: 650 EQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEV 709
Query: 303 ------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
A+A LI+ P R++K++ +C HSA R++S ++ERE++V+D
Sbjct: 710 KEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDAT 769
Query: 351 SFHHFKDGKCSCKDAY 366
FHHFKDG CSC+D +
Sbjct: 770 RFHHFKDGSCSCQDYW 785
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 6/131 (4%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD--L 102
D +++ +L++C N L +G Q A++ + + AVGN LI++ ++ G ++ A +
Sbjct: 277 DKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIV 336
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
TP N +++T ++ G A +F + R + + + + YA GL
Sbjct: 337 EITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHR----DVVAWTAMIVGYAQNGL 392
Query: 163 VGEAYRLFLSM 173
+ +A LF M
Sbjct: 393 ISDALVLFRLM 403
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 4/137 (2%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
++ ++L SC L+VG + +++ K G V N L+N+ ++CG A + F
Sbjct: 146 FTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDR 205
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
K++ +W +IS + AL LF + T + ++ S + Y G A
Sbjct: 206 MRLKDTSTWNTMISMHMQFCQFDLALALFD----QMTDPDIVSWNSIITGYCHQGYDIRA 261
Query: 167 YRLFLSMEEVYHIEPSE 183
F M + ++P +
Sbjct: 262 LETFSFMLKSSSLKPDK 278
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 9/161 (5%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N L+N+ + G DA F P K + SW I+SA G+ A +F D+ + S
Sbjct: 52 NNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVF-DEIPQPDS 110
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE---E 201
++ TT + Y +GL A FL M I P++ ++ ++ + A + +
Sbjct: 111 VSWTTM---IVGYNHLGLFKSAVHAFLRMVS-SGISPTQFTFTNVLASCAAAQALDVGKK 166
Query: 202 VLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
V F+ + + P+ L + ++ GD +AK D++
Sbjct: 167 VHSFVVKLGQSGVVPVANSLLNMYAKC-GDSVMAKVVFDRM 206
>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1125
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 112/409 (27%), Positives = 196/409 (47%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+PW ++ + ++ +E +L +Q D+ + I+ +C + L +G Q ++
Sbjct: 467 VPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSH 526
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G IS+ G+ L+++ ++CG I DA F+ P +NS+SW +ISA +G
Sbjct: 527 IIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCT 586
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF++ + + S L A + GLV E + F SM +Y + P +EHY+ ++
Sbjct: 587 LRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTID 646
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL----DP 247
L R G F+E E + +P + ++W ++L S +H + +LAK A ++L + D
Sbjct: 647 MLCRGGRFDEA-EKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDA 705
Query: 248 GMYVG--------------------------------CWIEIQNKIYEFVSNEEL---TS 272
YV W+EI++K + F +N++
Sbjct: 706 APYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMR 765
Query: 273 EVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPT 317
E+ KL E+EE M + G+ + S Y ++ A+A LIS P G P
Sbjct: 766 EIMKKLDELEEKMVKKGYKPDSSCALHNVDEEVKVESLKYHSERIAIAFALISTPEGSPI 825
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ C H+A + +S I+ RE+ V+D FHHF+DG C+C+D +
Sbjct: 826 LVMKNLRACTDCHAAIKVISKIVRREITVRDSSRFHHFRDGFCTCRDYW 874
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%)
Query: 32 ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91
EL + +Q ++ +L+ + L++G Q + IS VGN L+++
Sbjct: 386 ELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMY 445
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR 151
++CG+ +A+ F ++S+ WT +IS+ V G + L LF + Q + T+
Sbjct: 446 AKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYA 505
Query: 152 SALKAYA 158
S ++A A
Sbjct: 506 SIVRACA 512
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 47/94 (50%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
++ IL + + + G Q ++ K + + V N L++ S+ ++ +A F
Sbjct: 300 FTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYE 359
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQW 140
PE + +S+ +++ +G E+L+LFK+ Q+
Sbjct: 360 MPEVDGISYNVLVTCYAWNGRVKESLELFKELQF 393
>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
Length = 650
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 114/413 (27%), Positives = 200/413 (48%), Gaps = 66/413 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ ++ D EL R++ + ++ +L +C ++L G Q A+
Sbjct: 246 VVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAH 305
Query: 72 MTK--RGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ K R LI H N L+++ +CG ++DA+ F P+++ +SW+ +IS +G +
Sbjct: 306 VLKYERDLILH----NALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSA 361
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
EAL +F + + N T L A + GLV + + F SM++++ I+P EH++ M
Sbjct: 362 EALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCM 421
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
V+ LGRAG +E +EFI+ + L P +IWRTLL + R+H LA YA ++L+L+P
Sbjct: 422 VDLLGRAGKLDEAVEFIRDM---NLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEP 478
Query: 248 ---GMYV--------------------------------GCWIEIQNKIYEFVSNEELTS 272
G V WIE++ ++ F++ +L+
Sbjct: 479 DDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAG-DLSH 537
Query: 273 EVSD----KLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPH 313
SD +L + + LG+V Y ++ A+A G +
Sbjct: 538 PCSDTIVQELNRLIGRISALGYVPQTEFVLQDLAIEQKEDLLKYHSEKMAIAFGTMHAVG 597
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G P R++K++ +CG H+ + +S R ++++DP FHHF+DG CSC D +
Sbjct: 598 GKPIRIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSCGDYW 650
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 11/129 (8%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA--------VGNCLININSRCGK 96
D S+ ++ C+ G ++ G +SH + V N L+++ ++ G
Sbjct: 71 DPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGL 130
Query: 97 IDDADLAFKSTPEKNSLSWTFIISARVN-HGHPSEALDLFKDKQWR-YTSMNPTTFRSAL 154
+DDA F PE+N ++WT +++A N G EAL F WR + N TF S L
Sbjct: 131 LDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALR-FLVAMWRDGVAPNAYTFSSVL 189
Query: 155 KAYALMGLV 163
A G++
Sbjct: 190 GACGTPGVL 198
>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 830
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 112/409 (27%), Positives = 197/409 (48%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL-LNVGTQAQA 70
+ W+ +L +A D ++ + + ++I +++C +P +++G Q A
Sbjct: 423 VSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHA 482
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K V + L+++ +R G I++A F+ +++ LSW ++S HG+ +
Sbjct: 483 ISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQK 542
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
ALD+F+ + M+ TF S + A GLV E + F M Y I P+ +HY+ MV
Sbjct: 543 ALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMV 602
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ RAG +E + I+G+ P P IWR LL + RVH +++L K A +KLL L+P
Sbjct: 603 DLYSRAGKLDETMSLIEGM-PFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDS 661
Query: 248 GMYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTS 272
YV GC WI+I+NK++ F+++++ L+
Sbjct: 662 ATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKVHFFIASDKSHPLSE 721
Query: 273 EVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGMPT 317
++ KL + +K+ G+ + S ++ A+A GLI+ P P
Sbjct: 722 QIYAKLRAMTAKLKQEGYCPDTSFVPHDVAEDQKEAMLAMHSERLALAFGLIATPPAAPL 781
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ + G H+ + +S I +RE+V++D FHHFK G CSC D +
Sbjct: 782 HIFKNLRVSGDGHTVMKMVSEIEDREIVMRDCCRFHHFKSGVCSCGDFW 830
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 109/233 (46%), Gaps = 2/233 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W LL I+A V L R++ + + ++ +L+ + ++++G A
Sbjct: 123 VTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQ 182
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G S V N L+N+ ++CG +++A + F ++ +SW +++ V +G EA
Sbjct: 183 SIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEA 242
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF D + T + +T+ + + A + +G A +L S+ + + + +++
Sbjct: 243 LQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLK-HGFHSYGNVMTALMD 301
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
A +AG ++ L+ ++ G + W ++ +GD+ LA ++ E
Sbjct: 302 AYNKAGQLDKALDVFL-LMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMRE 353
>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
Length = 781
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 114/411 (27%), Positives = 194/411 (47%), Gaps = 59/411 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W ++ A + + +L + +QL S ++ +L++C + L G Q ++
Sbjct: 374 ITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSH 433
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + V LIN+ +CGK+ +A F+ +++ L W ++ A HG+ E
Sbjct: 434 IIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDET 493
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF Q + +F S L A + G V + Y+ F++M + + I P+ E Y +V+
Sbjct: 494 LQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVD 553
Query: 192 ALGRAGMFEEVLEFI---KGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP- 247
LGRAG +E ++ + G +P ++W TLL + R H AK A +++LE DP
Sbjct: 554 LLGRAGRIQEAVDIVLKLSGCLPD---GILWMTLLGACRTHNKTDQAKAAAEQVLERDPS 610
Query: 248 --GMYV---------GCW-----------------------IEIQNKIYEFVSNEELTSE 273
G YV G W IEI N+++EF+ +
Sbjct: 611 HSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPR 670
Query: 274 VSDKLAEIE---ENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGM 315
AE++ M+ G++ + + Y ++ A+A GLIS P G
Sbjct: 671 RHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLISTPPGT 730
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P RVIK++ +C H+A +++S + RE++V+D FH+FKDG+CSCKD +
Sbjct: 731 PLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 781
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 40/231 (17%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ AC++ + + L R+QL + ++ + N+ +P L+ G
Sbjct: 172 VSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGL 231
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
++ + S V N +N+ G + DA F+ +++ ++W +I+ V + + EA
Sbjct: 232 VSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEA 291
Query: 132 LDLFKDKQWRYTSMNPTTF-----------------------------RSALKAYALMGL 162
+ LF Q N TF R A+ A ALM L
Sbjct: 292 VRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSL 351
Query: 163 V------GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK 207
G+A+++F+ M I +++M A + G +E L+ +
Sbjct: 352 YGRCEAPGQAWKIFVDMGSKDVIT-----WTVMCVAYAQNGFRKEALQLFQ 397
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 63/147 (42%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
W ++ + DY+ + ++Q + ILN+C + L G +
Sbjct: 71 FAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQ 130
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ ++G VG LIN+ ++CG + A +FK ++ +SWT +I+A V H + A
Sbjct: 131 ILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALA 190
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L++ Q N T + AY
Sbjct: 191 RWLYRRMQLDGVVPNKITLYTVFNAYG 217
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/220 (18%), Positives = 88/220 (40%), Gaps = 5/220 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN+++ ++ +++ L R+Q + + +LN + L G
Sbjct: 273 VTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHEL 332
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G V L+++ RC A F K+ ++WT + A +G EA
Sbjct: 333 VKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEA 392
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS-MEEVYHIEPSEEHYSIMV 190
L LF++ Q T + L A + + + ++ +E + +E E + ++
Sbjct: 393 LQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVE--TALI 450
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
G+ G E + + + + L+W ++L + HG
Sbjct: 451 NMYGKCGKMAEAMSVFEKMAKRDI--LVWNSMLGAYAQHG 488
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 47/114 (41%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+ +L C + ++ G + ++ RG + V LI + ++CG + +A F
Sbjct: 3 DTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVF 62
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+ K+ +WT +I G AL +F Q T+ + L A A
Sbjct: 63 EILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACA 116
>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Brachypodium distachyon]
Length = 796
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 112/405 (27%), Positives = 189/405 (46%), Gaps = 53/405 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ C++ + +E L + D ++I ++N+C + ++ G Q Q +
Sbjct: 391 VTWTAMISGCVQNELFERALALFHELLGVGLKPDPFTISSVMNACASLAVVRTGEQMQCF 450
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
TK G A+GN I++ +R G ++ A F+ + +SW+ IIS+ HG +A
Sbjct: 451 ATKSGFDRFTAMGNSCIHMYARSGNVEAAIQRFQEMESHDVVSWSAIISSHAQHGCARQA 510
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L F + N TF L A + GLV E R + M+ Y + P+ +H + +V+
Sbjct: 511 LQFFNEMVGAKVVPNEITFLGVLTACSHGGLVDEGLRYYEIMKMEYGLCPTVKHCTCVVD 570
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG + FI+ + P++W++LL S R+H DM+ + D+++EL P G
Sbjct: 571 LLGRAGRLADAEAFIRDSIFHDE-PVVWQSLLGSCRIHRDMERGQLVADRIMELQPASSG 629
Query: 249 MYVG--------------------------------CWIEIQNKIYEFVSNEELTSE--- 273
YV WIE+++ I+ FV+ ++ E
Sbjct: 630 CYVNLYNMYLDAGELSLGSKIRDLMKERGVKKEPGLSWIELRSGIHSFVAGDKSHPECNA 689
Query: 274 VSDKLAEIEENMKEL--------------GFVLNRSLYQTKMKAVALGLISFPHGMPTRV 319
+ KLAE+ + +L G N ++ AVALG+I P P RV
Sbjct: 690 IYTKLAEMLSKIDKLTTTDTSCIEWVETTGREQNWMNCHSEKLAVALGIIHLPQSAPIRV 749
Query: 320 IKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+K++ +C HS + +S RE++++D FHHF+DG CSC D
Sbjct: 750 MKNLRVCRDCHSTMKLISKSECREIILRDVIRFHHFRDGSCSCGD 794
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 1/145 (0%)
Query: 12 IPWNLLLKACIKA-KDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ +NLL+ A +A + E + L + D ++ L +C L G A
Sbjct: 79 VSFNLLIDAYSRAGQTEESLETFLHAHRAAEVKADRFTYAAALAACSRAGRLKEGKVVHA 138
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
GL V N L+++ +RCG + +A F T E++ +SW ++S + G E
Sbjct: 139 LAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEERDDVSWNSLVSGYLRVGAHEE 198
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALK 155
L +F + +N S +K
Sbjct: 199 MLRVFALMRRCAMGLNSFALGSVIK 223
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI--NSRCGKIDDADLAF 104
++ ++ +C + G Q + K +G+ LI++ NS C ++D F
Sbjct: 325 FTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYFNSAC--MEDGFRCF 382
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV- 163
+S P+++ ++WT +IS V + AL LF + +P T S + A A + +V
Sbjct: 383 RSVPKQDVVTWTAMISGCVQNELFERALALFHELLGVGLKPDPFTISSVMNACASLAVVR 442
Query: 164 -GEAYRLFLS 172
GE + F +
Sbjct: 443 TGEQMQCFAT 452
>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
protein [Oryza sativa Japonica Group]
gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 751
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 178/373 (47%), Gaps = 54/373 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ +++SC N L G Q GL+ + V N L+ + +CG I+DA F
Sbjct: 378 DDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLF 437
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ +SWT +++ G E +DLF+ + TF L A + GLV
Sbjct: 438 DEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVE 497
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ F SM++ + I P ++HY+ M++ R+G F+E EFIK + P W TLL
Sbjct: 498 KGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQM-PHSPDAFGWATLLS 556
Query: 225 SSRVHGDMKLAKYALDKLLELD---PGMYV------------------------------ 251
S R+ G+M++ K+A + LLE D P YV
Sbjct: 557 SCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKE 616
Query: 252 -GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS----------- 295
GC WI+ +NK++ F ++++ +S + +KL + M E G+ + S
Sbjct: 617 PGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADK 676
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ ++ A+A GLI P MP R++K++ +C H+A +F+S I R+++V+D
Sbjct: 677 VHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVR 736
Query: 352 FHHFKDGKCSCKD 364
FH F DG CSC D
Sbjct: 737 FHKFSDGTCSCGD 749
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
ID Y+ IL +C L G Q AY+T+ + VG+ L+++ S+C I A+
Sbjct: 276 IDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAV 335
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
F+ +N +SWT +I + EA+ F + Q
Sbjct: 336 FRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQ 371
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N LI RC I+DA F+ +++S++WT +++ +G EALD+F+ +
Sbjct: 216 NTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVG 275
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYH 178
++ TF S L A + + E ++ + ++
Sbjct: 276 IDQYTFGSILTACGALAALEEGKQIHAYITRTWY 309
>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 111/409 (27%), Positives = 188/409 (45%), Gaps = 56/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ ++ +E L + D ++I +L++C N + G Q AY
Sbjct: 317 VSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAY 376
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G+ + + N I + ++CG ID A++ FK T + +SW+ +IS+ HG EA
Sbjct: 377 AIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEA 436
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+DLF+ + + N TF L A + GLV E R F M++ + I P+ +H + +V+
Sbjct: 437 VDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVD 496
Query: 192 ALGRAGMFEEVLEFI-KGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMY 250
LGRAG E FI G P++WR+LL + RVH K ++++EL+P
Sbjct: 497 LLGRAGRLAEAESFIMDSGFEGD--PVMWRSLLSACRVHKATDTGKRVAERVIELEPEAA 554
Query: 251 VG-----------------------------------CWIEIQNKIYEFVSNEEL---TS 272
WIE+ N ++ FV+ + +
Sbjct: 555 ASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQ 614
Query: 273 EVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPT 317
+ +L E+ E +K+L ++ + + Y ++ AV G+IS P P
Sbjct: 615 VIYVQLEEMLEEIKKLDYIDEKLVSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPV 674
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV+K++ C + H + S + RE++++DP FH F+DG CSC D +
Sbjct: 675 RVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCSCGDYW 723
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 68/145 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ + Y V L + ++ +D ++ + L+ C + L +G A
Sbjct: 7 VSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHAL 66
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+T GL + N LI++ +CG+ID A L F+S E +S+SW +I+ V G E
Sbjct: 67 ITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEM 126
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
L L ++N SALKA
Sbjct: 127 LRLLVKMLRHGLNLNSYALGSALKA 151
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
++ IL +C G Q A + K L S +GN L+ + S G I+D F S
Sbjct: 251 FTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHS 310
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
TP+ + +SWT +I V +G L LF +
Sbjct: 311 TPKLDVVSWTSLIVGHVQNGQFEGGLTLFHE 341
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV--GTQAQ 69
+ WN L+ ++ + + LL ++ ++SY++ L +C + ++ G
Sbjct: 108 VSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLH 167
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA-----RVN 124
K GL VG L++ ++ G ++DA FK P+ N + + +I+ +
Sbjct: 168 GCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMA 227
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+EA+ LF + Q R + TF S LKA
Sbjct: 228 DEFANEAMYLFFEMQSRGMKPSEFTFSSILKA 259
>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
Length = 770
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 111/381 (29%), Positives = 185/381 (48%), Gaps = 65/381 (17%)
Query: 45 DSYSICDILNSCLNPIL-LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+ ++ +LN+C P + G Q + K G + V + L+ + ++ G I+ A+
Sbjct: 396 NEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEV 455
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
FK +++ +SW +IS HG ++L +F++ + + ++ TF + A GLV
Sbjct: 456 FKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLV 515
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E R F M + YHI P+ EHYS MV+ RAGM E+ ++ I + P IWRTLL
Sbjct: 516 NEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKM-PFPAGATIWRTLL 574
Query: 224 LSSRVHGDMKLAKYALDKLLELDP---GMYV----------------------------- 251
+ RVH +++L + A +KL+ L P YV
Sbjct: 575 AACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKK 634
Query: 252 ---GCWIEIQNKIYEFVSN--------------EELTSEVSDK---------LAEIEENM 285
WIE++NK + F++ EEL+ + D L ++EE
Sbjct: 635 EAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEH 694
Query: 286 KELGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELV 345
KE+ +L++ ++ A+A GLI+ P G P +++K++ +CG H+ + +S I R++V
Sbjct: 695 KEV--ILSQ---HSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIV 749
Query: 346 VKDPGSFHHFKDGKCSCKDAY 366
V+D FHHFK G CSC D +
Sbjct: 750 VRDSNRFHHFKGGSCSCGDYW 770
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W LL + E +L ++QL + ++ +L + G Q
Sbjct: 159 VSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTM 218
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL S VGN ++N+ S+ + DA F S +N++SW +I+ V +G EA
Sbjct: 219 VIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEA 278
Query: 132 LDLFKDKQWRYTSMNPTTFRSALK 155
+LF + + T F + +K
Sbjct: 279 FELFYRMRLEGVKLTQTIFATVIK 302
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
VG Q K G + +VG L+++ + ++D + F KN +SWT +++
Sbjct: 110 VGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYR 169
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
+G +AL LF Q NP TF + L A G V
Sbjct: 170 QNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAV 209
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 95/247 (38%), Gaps = 8/247 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + EL R++L + ++ C N ++ Q
Sbjct: 260 VSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQ 319
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAF-KSTPEKNSLSWTFIISARVNHGHPSE 130
+ K G + L+ S+C +IDDA F +N +SWT IIS V +G
Sbjct: 320 VIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDR 379
Query: 131 ALDLF-KDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
A++LF + ++ N TF S L A A E + F S + S +
Sbjct: 380 AMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSAL 439
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG----DMKLAKYALDKLLEL 245
V + G E E K V L W +++ HG +K+ + K LEL
Sbjct: 440 VTMYAKRGNIESANEVFKRQVDRDLVS--WNSMISGYAQHGCGKKSLKIFEEMRSKNLEL 497
Query: 246 DPGMYVG 252
D ++G
Sbjct: 498 DGITFIG 504
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 115/414 (27%), Positives = 204/414 (49%), Gaps = 65/414 (15%)
Query: 12 IPWNLLL----KACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQ 67
I WN ++ + + + E+ H +++ ++ ++ ++ +L +C + +G
Sbjct: 328 ISWNSIIAVYAQNGMSTESMEIFHRMVKDGEIN---YNAVTLSAVLLACAHSGSQRLGKC 384
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
+ K GL S+ VG +I++ +CGK++ A AF EKN SW+ +++ HGH
Sbjct: 385 IHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGH 444
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
EAL++F + N TF S L A + GL+ E + F +M + +EP EHY
Sbjct: 445 AKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYG 504
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
MV+ LGRAG +E + IKG+ KL P ++W LL + R+H ++ L + + KL EL
Sbjct: 505 CMVDLLGRAGYLKEAFDLIKGM---KLRPDFVVWGALLGACRMHKNVDLGEISARKLFEL 561
Query: 246 DP---GMYV---------GCW-----------------------IEIQNKIYEFVSNEE- 269
DP G YV G W ++I+ +++ F+ +
Sbjct: 562 DPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDRE 621
Query: 270 --LTSEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFP 312
++ + L ++ ++E+G+V + + ++ AVA G+++
Sbjct: 622 HPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTV 681
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G +IK++ +CG H+A +F+S I++RE+VV+D FHHF+DG CSC D +
Sbjct: 682 PGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D ++ +L++C ++ ++ KRG V N L++ ++CG++ +
Sbjct: 259 VDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRV 318
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLF----KDKQWRYTSMNPTTFRSALKAYAL 159
F E++ +SW II+ +G +E++++F KD + Y N T + L A A
Sbjct: 319 FDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINY---NAVTLSAVLLACAH 375
Query: 160 MG 161
G
Sbjct: 376 SG 377
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%)
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
+ SC + L+ G QA G V + L+++ S+CG++ DA F +N
Sbjct: 159 IKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNI 218
Query: 113 LSWTFIISARVNHGHPSEALDLFKD 137
+SWT +I+ V + AL LFK+
Sbjct: 219 VSWTSMITGYVQNDDAHRALLLFKE 243
>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Vitis vinifera]
Length = 993
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 192/378 (50%), Gaps = 59/378 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS S+ IL++ + L G + ++ ++G + ++ + L+++ +RCG ++ + F
Sbjct: 619 DSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVF 678
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
K+ + WT +I+A HG A+DLF+ + + + F + L A + GL+
Sbjct: 679 NFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMN 738
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPL--IWRTL 222
E R SM+ Y +EP EHY +V+ LGRA EE +F+KG+ ++ P +W L
Sbjct: 739 EGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGM---EVEPTAEVWCAL 795
Query: 223 LLSSRVHGDMKLAKYALDKLLELD---PGMYV---------------------------- 251
L + ++H + +L + A KLLE+D PG YV
Sbjct: 796 LGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLK 855
Query: 252 ---GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELG-------FVLNRSLY 297
GC WIE+ NK++ F++ ++ + E+ KL++I E + + G FVL+ +
Sbjct: 856 KNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKE 915
Query: 298 QTKMK---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
+ K++ A+A G+++ P G R+ K++ +CG H+ C+ +S ERELV++D
Sbjct: 916 EEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRD 975
Query: 349 PGSFHHFKDGKCSCKDAY 366
FHHFK G CSC D +
Sbjct: 976 ANRFHHFKGGVCSCGDVW 993
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 41/228 (17%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ A + + EL +++ +D+ + IL +C G +
Sbjct: 184 WNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAI 243
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK-NSLSWTFIISARVNHGHPSEAL 132
K G +S V N ++ + ++C ++ A F PEK + +SW +ISA ++G EAL
Sbjct: 244 KEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEAL 303
Query: 133 DLFKDKQWRYTSMNPTTFRSALKA-----------------------------------Y 157
LF + Q + N TF +AL+A Y
Sbjct: 304 RLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMY 363
Query: 158 ALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEF 205
A G +GEA +F +M++ I ++ M+ + G++ E L+F
Sbjct: 364 ARFGKMGEAANIFYNMDDWDTIS-----WNSMLSGFVQNGLYHEALQF 406
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN +L ++ Y + ++ D ++ I+ + G Q AY
Sbjct: 385 ISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAY 444
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K GL S VGN L+++ ++ + D F P+K+ +SWT II+ +G S A
Sbjct: 445 AMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRA 504
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
L+LF++ Q ++ S L A + + L+
Sbjct: 505 LELFREVQLEGIDLDVMMISSILLACSGLKLI 536
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + + EL +QL +D I IL +C L++ + +Y
Sbjct: 486 VSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSY 545
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ ++GL S + N ++++ CG +D A F+ K+ +SWT +IS V++G +EA
Sbjct: 546 IIRKGL-SDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEA 604
Query: 132 LDLF 135
L+LF
Sbjct: 605 LELF 608
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYM-TKRGLISHPAVGNCLININSRCGKIDDADLA 103
++YS +L C + L+ G Q A+M T L + + L+ + +CG + DA+
Sbjct: 115 EAYS--SVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKL 172
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
F P K +W +I A V +G P +L+L+++ + ++ TF LKA L+
Sbjct: 173 FDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLL 229
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 54/126 (42%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A L +Q ++Y+ L +C + + G A
Sbjct: 284 VSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHAT 343
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + V N LI + +R GK+ +A F + + +++SW ++S V +G EA
Sbjct: 344 VLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEA 403
Query: 132 LDLFKD 137
L + +
Sbjct: 404 LQFYHE 409
>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 115/392 (29%), Positives = 188/392 (47%), Gaps = 55/392 (14%)
Query: 28 EMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL 87
E +H +E +Q C ++ S L++C N L +G Q + K G + VGN L
Sbjct: 163 EALHFFVE-MQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNAL 221
Query: 88 ININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP 147
+ + +CG ID+A AF+ EK+ +SW +I HG EAL +F+ + +
Sbjct: 222 LAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDD 281
Query: 148 TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK 207
T S L A + GLV + F SM Y I HY+ MV+ LGRAG EE +K
Sbjct: 282 ATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMK 341
Query: 208 GIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMYV------------- 251
+ P + W LL +SR+HG+ +L + A + E++P GMY+
Sbjct: 342 NM-PFEPDAATWGALLGASRIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWS 400
Query: 252 -------------------GCWIEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELG 289
W+E+QNKI+ F ++ T ++ L E++ +K+ G
Sbjct: 401 DAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEG 460
Query: 290 FVLNRSL---------------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACR 334
++ + +L Y ++ AVA G++ P G P RVIK++ +C H+A +
Sbjct: 461 YISSTNLVFHDVEEEEKVHMLKYHSEKLAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIK 520
Query: 335 FMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++S I+ R ++++D FH+F+ G CSC+D +
Sbjct: 521 YISKIVGRLIILRDNHRFHYFEGGSCSCRDFW 552
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 73/196 (37%), Gaps = 55/196 (28%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
WN++L ++ +D + L ER
Sbjct: 27 FSWNVMLTGYVRNRDLKTARALFER----------------------------------- 51
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M +R ++S N +++ ++ G +D+A F P KN +SW +++A V +G +A
Sbjct: 52 MPERDIVSW----NAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDA 107
Query: 132 LDLFKDK-QWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
LF+ K W S N + G V + LF +M + I +S M+
Sbjct: 108 KRLFESKMDWTLVSWNCL----------MGGFVRKRRNLFDNMPQRDSIS-----WSAMI 152
Query: 191 EALGRAGMFEEVLEFI 206
+ G EE L F
Sbjct: 153 AGYSQNGCSEEALHFF 168
>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Glycine max]
Length = 722
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 180/379 (47%), Gaps = 58/379 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGL-ISHPAVGNCLININSRCGKIDDADLA 103
D S + ++C N +VG Q A K + + +V N L+ + S+CG + DA
Sbjct: 345 DDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRV 404
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F + PE N +S +I+ HG E+L LF+ + + N TF + L A G V
Sbjct: 405 FDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKV 464
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E + F M+E + IEP EHYS M++ LGRAG +E I+ +P + W TLL
Sbjct: 465 EEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIE-TMPFNPGSIEWATLL 523
Query: 224 LSSRVHGDMKLAKYALDKLLELDP----------GMYV---------------------- 251
+ R HG+++LA A ++ L+L+P MY
Sbjct: 524 GACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKK 583
Query: 252 --GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLN------------ 293
GC WIEI K++ FV+ + + E+ + EI MK+ G+V +
Sbjct: 584 KPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVE 643
Query: 294 ------RSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
R LY ++ AVA GLIS +P V+K++ +CG H+A + +S I RE+ V+
Sbjct: 644 PDEKERRLLYHSEKLAVAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAITGREITVR 703
Query: 348 DPGSFHHFKDGKCSCKDAY 366
D FH FK+G CSC D +
Sbjct: 704 DTHRFHCFKEGHCSCGDYW 722
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 17/146 (11%)
Query: 11 EIPWNLLLKACIKAKD----YEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVG 65
E+ WN ++ AC + ++ E+ E++ R G +D +++ +L + L G
Sbjct: 208 EVSWNAMIVACGQHREGLEAVELFREMVRR-----GLKVDMFTMASVLTAFTCVKDLVGG 262
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRC-GKIDDADLAFKSTPEKNSLSWTFIISARVN 124
Q M K G + VG+ LI++ S+C G + + F+ + + W +IS
Sbjct: 263 MQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGF-- 320
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTF 150
S+ DL +D W + M F
Sbjct: 321 ----SQYEDLSEDGIWCFREMQHNGF 342
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D +++ ++ +C + + L Q ++ G + +V N ++ SR G +++A
Sbjct: 139 LDGFTLSGVIIACGDDVGLV--RQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRV 196
Query: 104 FKSTPE---KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA-L 159
F+ E ++ +SW +I A H EA++LF++ R ++ T S L A+ +
Sbjct: 197 FREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCV 256
Query: 160 MGLVG 164
LVG
Sbjct: 257 KDLVG 261
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 196/408 (48%), Gaps = 56/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN L+ A + + +QL ++ ++ L++C L +G +
Sbjct: 332 VAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHS 391
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ K G+ + V + LI++ S+CG ++ A F S +++ W+ +I HG SE
Sbjct: 392 YIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSE 451
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+D+F Q N TF + A + GLV EA LF ME Y I P ++HY+ +V
Sbjct: 452 AVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIV 511
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGR+G E+ ++FI+ + P +W LL + ++H ++ LA+ A +LLEL+P
Sbjct: 512 DVLGRSGYLEKAVKFIEAM-PIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRND 570
Query: 248 GMYV---------GCW-----------------------IEIQNKIYEFVSNEE---LTS 272
G +V G W IEI I+EF+S + ++
Sbjct: 571 GAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSE 630
Query: 273 EVSDKLAEIEENMKELGFVLNRS-----LYQTKMK-----------AVALGLISFPHGMP 316
+V KL E+ E +K G+ S + + +MK A+ GLIS
Sbjct: 631 KVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKA 690
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
RVIK++ MCG H+ + +S + RE++V+D FHHF++G+CSC D
Sbjct: 691 IRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCSCND 738
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 3/185 (1%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L++G K + S V N LI+ CG +D A F + EK+ +SW +I+
Sbjct: 149 LSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMING 208
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
V G P +AL+LFK + + T L A A + + R+ +EE +
Sbjct: 209 FVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEE-NRVNV 267
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
+ + M++ + G E+ + + W T+L + D + A+ L+
Sbjct: 268 NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKD--NVTWTTMLDGYAISEDYEAAREVLNA 325
Query: 242 LLELD 246
+ + D
Sbjct: 326 MPKKD 330
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/251 (19%), Positives = 104/251 (41%), Gaps = 35/251 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ ++ + EL ++++ ++ +L++C L G + +Y
Sbjct: 200 VSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSY 259
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTF-------------- 117
+ + + + + N ++++ ++CG I+DA F + EK++++WT
Sbjct: 260 IEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAA 319
Query: 118 -----------------IISARVNHGHPSEALDLFKDKQ-WRYTSMNPTTFRSALKAYAL 159
+ISA +G P+EAL +F + Q + +N T S L A A
Sbjct: 320 REVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQ 379
Query: 160 MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIW 219
+G + E R S + I+ + S ++ + G E+ E + + +W
Sbjct: 380 VGAL-ELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDV--FVW 436
Query: 220 RTLLLSSRVHG 230
++ +HG
Sbjct: 437 SAMIGGLAMHG 447
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 191/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + L + +Q+ ++ S+ ++ +C + L+ G A AY
Sbjct: 208 VSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAY 267
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + +G L+++ +CG +D A F EKN +W+ I +G+ +
Sbjct: 268 IEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKC 327
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+LF + + N TF S LK +++G V E F SM+ + IEP EHY MV+
Sbjct: 328 LELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVD 387
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
GRAG EE L FI +P K W LL + R++ +M+L ++A KL+E++ G
Sbjct: 388 LYGRAGRLEEALNFIN-TMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIEVEGKNHG 446
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNEELTSE--- 273
YV G W +E+ +++EF S ++
Sbjct: 447 AYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFFSGDKSHPSYDV 506
Query: 274 VSDKLAEIEENMKELGFV--LNRSLY-------------QTKMKAVALGLISFPHGMPTR 318
+ EI + +K G+V N L+ ++ A+A GL S G+P R
Sbjct: 507 IETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKHSEKMAIAFGLFSLKEGLPIR 566
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +C H + +S I ERE++V+D FHHFKDG+CSCKD +
Sbjct: 567 IVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCKDFW 614
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 87 LININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN 146
+++ ++CG I A F S P+++ +SW +I+ G EAL+LFK Q +N
Sbjct: 182 MVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVN 241
Query: 147 PTTFRSALKAYALMGLVGEA 166
+ S + A +G + +
Sbjct: 242 EVSMISVVTACTHLGALDQG 261
>gi|357135729|ref|XP_003569461.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g52630-like [Brachypodium distachyon]
Length = 595
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 176/374 (47%), Gaps = 55/374 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
++ +++ I+ C L ++G Q A K L + P VG+ L+++ S+CG +D A
Sbjct: 222 VNDFTVSCIVRVCATATLFDLGAQVHARSIKTALDASPFVGSSLVSLYSKCGLVDRAYRI 281
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F + PE+N W +++A HGH + A + F + Q N TF L A + GLV
Sbjct: 282 FSAAPERNLGIWNAVLNASAQHGHTATAFERFMEMQNDGFRPNYITFLCLLTACSHAGLV 341
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E R F M+E Y IEP EHY+ MV+ LGR G E LE I+ + P + +W LL
Sbjct: 342 DEGKRYFSLMKE-YTIEPQAEHYAAMVDLLGRVGRITEALELIESM-PMEPPESVWGALL 399
Query: 224 LSSRVHGDMKLAKYALDKLLELD----------------PGMYVGC-------------- 253
++ R+ D A A +L + G +V
Sbjct: 400 MACRMFKDADTAAIAAKRLFQTGSRSSGAHMLLSSTYAAAGRHVDAALARKAMRDAGVRK 459
Query: 254 -----WIEIQNKIYEFVSN---EELTSEVSDKLAEIEENMKELGFVLNRSL--------- 296
W+E +++ FVSN + E+ + L ++ E M+ G+V + S
Sbjct: 460 ETGLSWLEAAGEVHTFVSNCRRHPRSDEIYNVLEKVGEKMEGAGYVADTSAVVKDVAREE 519
Query: 297 ------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
Y ++ A+ LGL+ P G+P RV+K++ +C H+A +++S R ++++D
Sbjct: 520 KCETLGYHSERLAIGLGLLIVPEGVPIRVMKNLRVCDDCHNAIKYLSKCTGRVVILRDNR 579
Query: 351 SFHHFKDGKCSCKD 364
FH F+DG CSC D
Sbjct: 580 RFHRFEDGLCSCGD 593
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
VG+ ++++ ++CG + DA F PE+N +SW+ +I + G AL +F+
Sbjct: 160 VGSAVLDMYAKCGNLLDARRLFDEMPERNVVSWSALIGGYADAGMHPAALWIFRSALEEA 219
Query: 143 TSMNPTT 149
+N T
Sbjct: 220 VEVNDFT 226
>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Vitis vinifera]
Length = 802
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 111/409 (27%), Positives = 188/409 (45%), Gaps = 56/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ ++ +E L + D ++I +L++C N + G Q AY
Sbjct: 396 VSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAY 455
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G+ + + N I + ++CG ID A++ FK T + +SW+ +IS+ HG EA
Sbjct: 456 AIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEA 515
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+DLF+ + + N TF L A + GLV E R F M++ + I P+ +H + +V+
Sbjct: 516 VDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVD 575
Query: 192 ALGRAGMFEEVLEFI-KGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMY 250
LGRAG E FI G P++WR+LL + RVH K ++++EL+P
Sbjct: 576 LLGRAGRLAEAESFIMDSGFEGD--PVMWRSLLSACRVHKATDTGKRVAERVIELEPEAA 633
Query: 251 VG-----------------------------------CWIEIQNKIYEFVSNEEL---TS 272
WIE+ N ++ FV+ + +
Sbjct: 634 ASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQ 693
Query: 273 EVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPT 317
+ +L E+ E +K+L ++ + + Y ++ AV G+IS P P
Sbjct: 694 VIYVQLEEMLEEIKKLDYIDEKLVSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPV 753
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV+K++ C + H + S + RE++++DP FH F+DG CSC D +
Sbjct: 754 RVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCSCGDYW 802
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 68/145 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ + Y V L + ++ +D ++ + L+ C + L +G A
Sbjct: 86 VSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHAL 145
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+T GL + N LI++ +CG+ID A L F+S E +S+SW +I+ V G E
Sbjct: 146 ITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEM 205
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
L L ++N SALKA
Sbjct: 206 LRLLVKMLRHGLNLNSYALGSALKA 230
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
++ IL +C G Q A + K L S +GN L+ + S G I+D F S
Sbjct: 330 FTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHS 389
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
TP+ + +SWT +I V +G L LF +
Sbjct: 390 TPKLDVVSWTSLIVGHVQNGQFEGGLTLFHE 420
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N L+ + +CG+ D A F P++N +SW +IS G E ++LFK+ +
Sbjct: 58 NNLLYMYCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLR 117
Query: 145 MNPTTFRSAL 154
++ TF +AL
Sbjct: 118 LDKFTFSNAL 127
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV--GTQAQ 69
+ WN L+ ++ + + LL ++ ++SY++ L +C + ++ G
Sbjct: 187 VSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLH 246
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA-----RVN 124
K GL VG L++ ++ G ++DA FK P+ N + + +I+ +
Sbjct: 247 GCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMA 306
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+EA+ LF + Q R + TF S LKA
Sbjct: 307 DEFANEAMYLFFEMQSRGMKPSEFTFSSILKA 338
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 122/404 (30%), Positives = 183/404 (45%), Gaps = 54/404 (13%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ + E L +Q + +I IL++C L++G +
Sbjct: 388 WNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVR 447
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
S V LI + ++CG I +A F P+KN ++W +IS HGH EAL
Sbjct: 448 STDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALT 507
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
+F + + P TF L A + GLV E +F SM Y EPS +HY+ +V+ L
Sbjct: 508 IFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDIL 567
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMY 250
GRAG + L+FI+ + P + P +W TLL + R+H D LA+ +KL ELDP G +
Sbjct: 568 GRAGHLQRALQFIEAM-PIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYH 626
Query: 251 V--------------------------------GCWIEIQNKIYEFVSNEELTSEVS--- 275
V IEI + F S ++ +V
Sbjct: 627 VLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIH 686
Query: 276 DKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTRVI 320
+KL ++E M+E G+ L ++ A+A GLI+ G R+I
Sbjct: 687 EKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRII 746
Query: 321 KSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
K++ +C H+A + +S I ER +VV+D FHHFKDG CSC D
Sbjct: 747 KNLRVCLDCHTATKLISKITERVIVVRDANRFHHFKDGVCSCGD 790
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%)
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
Y K +SH +V L + S+ +I+ A F +PEK+ SW +IS +G
Sbjct: 342 HGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLT 401
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+A+ LF++ Q S NP T L A A +G
Sbjct: 402 EDAISLFREMQNSEFSPNPVTITCILSACAQLG 434
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 1/127 (0%)
Query: 12 IPWNLLLKACIKAKDY-EMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
I WN ++ K + Y E + + I C +D+ ++ DIL + L +G Q +
Sbjct: 186 ILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHS 245
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
TK G SH V I++ S+CGKI A F+ + +++ +I ++G
Sbjct: 246 LATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETEL 305
Query: 131 ALDLFKD 137
+L LFK+
Sbjct: 306 SLSLFKE 312
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/415 (27%), Positives = 206/415 (49%), Gaps = 67/415 (16%)
Query: 12 IPWNLLL----KACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQ 67
I WN ++ + + + E+ H +++ ++ ++ ++ +L +C + +G
Sbjct: 174 ISWNSIIAVYAQNGMSTESMEIFHRMVKDGEIN---YNAVTLSAVLLACAHSGSQRLGKC 230
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
+ K GL S+ VG +I++ +CGK++ A AF EKN SW+ +++ HGH
Sbjct: 231 IHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGH 290
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
EAL++F + N TF S L A + GL+ E + F +M + +EP EHY
Sbjct: 291 AKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYG 350
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
MV+ LGRAG +E + IKG+ KL P ++W LL + R+H ++ L + + KL EL
Sbjct: 351 CMVDLLGRAGYLKEAFDLIKGM---KLRPDFVVWGALLGACRMHKNVDLGEISARKLFEL 407
Query: 246 DP---GMYV---------GCW-----------------------IEIQNKIYEFVSNEE- 269
DP G YV G W ++I+ +++ F+ +
Sbjct: 408 DPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDRE 467
Query: 270 --LTSEVSDKLAEIEENMKELGFVLNRS----------------LYQTKMKAVALGLISF 311
++ + L ++ ++E+G+V + + ++ K+ AVA G+++
Sbjct: 468 HPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKL-AVAFGIMNT 526
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G +IK++ +CG H+A +F+S I++RE+VV+D FHHF+DG CSC D +
Sbjct: 527 VPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 581
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
+ SC + L+ G QA G V + L+++ S+CG++ DA F +N
Sbjct: 83 IKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNI 142
Query: 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS 172
+SWT +I+ V + AL +F R + ++ S + YA G+ E+ +F
Sbjct: 143 VSWTSMITGYVQNDDAHRALRVFDGMAER----DVISWNSIIAVYAQNGMSTESMEIFHR 198
Query: 173 M 173
M
Sbjct: 199 M 199
>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g24000, mitochondrial-like [Cucumis sativus]
Length = 677
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/415 (28%), Positives = 198/415 (47%), Gaps = 56/415 (13%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
SL + + WN L+ + + E V L ++ L GF ++ + +C + L
Sbjct: 266 SLAAKNVVSWNALIAGHARKGEGEHVMRLFXQM-LRQGFEPTHFTYSSVLACASSGSLEQ 324
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G A++ K G +GN LI++ ++ G I DA F+ +++ +SW IIS
Sbjct: 325 GKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQ 384
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
HG +EAL LF+ N TF S L A + GL+ E F M++ + IE
Sbjct: 385 HGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVA 443
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
H+ +V+ LGRAG E +FI+ + P K +W LL + R+H +M L YA +++ E
Sbjct: 444 HHVTVVDLLGRAGRLNEANKFIEEM-PIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFE 502
Query: 245 LDP---GMYV-------------------------------GC-WIEIQNKIYEFVSNEE 269
LDP G +V C W+EI+N+++ FV+N++
Sbjct: 503 LDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDD 562
Query: 270 ---LTSEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISF 311
+ E+ +I +KE+G+V + S Y ++ A+A ++
Sbjct: 563 SHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKT 622
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P G+ R+ K++ +CG HSA +F S ++ RE++V+D FHHF G CSC+D +
Sbjct: 623 PPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+LN C L G A++ + N ++N+ ++CG +++A F P K+
Sbjct: 111 MLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKD 170
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+SWT +IS G SEAL LF N T S LKA
Sbjct: 171 MVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA 215
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Q A+ K G + VG+ L+++ +R + +A + F S KN +SW +I+
Sbjct: 225 GRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHAR 284
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTF 150
G + LF Q PT F
Sbjct: 285 KGEGEHVMRLF--XQMLRQGFEPTHF 308
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/411 (28%), Positives = 194/411 (47%), Gaps = 60/411 (14%)
Query: 12 IPWNLLLKACIKA---KDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQA 68
I WN L+ ++ +D V + R +L F ++ +++ N + G Q
Sbjct: 583 ISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASF---FTFGSAVSAAANIANIKQGKQI 639
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A + KRG S V N LI ++CG I+DA F PEKN +SW +I+ HG+
Sbjct: 640 HAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYG 699
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
+EA++LF+ + N TF L A + +GLV + F SM + + + P HY+
Sbjct: 700 NEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYAC 759
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP- 247
+V+ + RAG +FI+ + P + IWRTLL + VH ++++ ++A LLEL+P
Sbjct: 760 VVDLISRAGFLSRARKFIEEM-PIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPE 818
Query: 248 ---------GMYV-------------------------GCWIEIQNKIYEFVSNEE---L 270
MY WIE++N ++ F + L
Sbjct: 819 DSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPL 878
Query: 271 TSEVSDKLAEIEENMKELGFVLNR--------------SLY-QTKMKAVALGLISFPHGM 315
++ + LAE+ + E+G+ +R ++Y ++ A+ GL+S +
Sbjct: 879 ADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSDTV 938
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P V+K++ +C HS +F+S I R ++V+D FHHF+ G CSCKD +
Sbjct: 939 PIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDAYRFHHFEGGICSCKDYW 989
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 8/200 (4%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN++L A K + + ++Q+ + ++ IL +C + L++G Q
Sbjct: 381 VLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQ 440
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + V + LI++ ++ GK+D A + ++ E + +SWT +IS H +EA
Sbjct: 441 VIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEA 500
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI--- 188
L FK+ R + F SA+ A A + + + ++ ++ E SI
Sbjct: 501 LKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQS----YVSGYSEDLSIGNA 556
Query: 189 MVEALGRAGMFEEV-LEFIK 207
+V R G +E LEF K
Sbjct: 557 LVSLYARCGRIKEAYLEFEK 576
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 10/161 (6%)
Query: 3 LCSLISDVEIPWNLLLKACIK----AKDYEMVHELLER-IQLCCGFIDSYSICDILNSCL 57
L +L D + W L+ + A+ + E+L R IQ D+ +++C
Sbjct: 473 LRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQ-----SDNIGFSSAISACA 527
Query: 58 NPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTF 117
LN G Q A G ++GN L+++ +RCG+I +A L F+ K+S+SW
Sbjct: 528 GIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNG 587
Query: 118 IISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+IS G+ +AL +F + TF SA+ A A
Sbjct: 588 LISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAA 628
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Query: 48 SICDILNSCL-NPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
S +L +C + I + Q A + GL+ P + N LI + ++ G I A F +
Sbjct: 113 SFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDN 172
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL--VG 164
K+S+SW +IS +G+ EA+ LF + P F S L + L VG
Sbjct: 173 LCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVG 232
Query: 165 E 165
E
Sbjct: 233 E 233
>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
Length = 785
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 106/406 (26%), Positives = 190/406 (46%), Gaps = 55/406 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQA 70
+ W ++ C++ + +E L + +C G D +++ ++N+C + + G Q Q
Sbjct: 380 VTWTSMISGCVQNELFEKALRLFQE-SICYGLKPDLFTMSSVMNACASLAVARTGEQIQC 438
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K G A+GN I++ +R G +D F+ ++ +SW+ +IS+ HG +
Sbjct: 439 LAIKYGFNRFTAMGNSFIHMCARSGDVDAVTRRFQEMESRDVVSWSAVISSHAQHGCARD 498
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL +F + + N TF + L A + GLV + R + M+ Y + P+ +H + +V
Sbjct: 499 ALRIFNEMMNAKVAPNEVTFLNVLTACSHGGLVDDGLRYYEIMKNEYGLSPTIKHVTCVV 558
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG + FI+ ++WR+LL S R+HGDM+ + D++++L+P
Sbjct: 559 DLLGRAGRLADAEAFIRDSAFHDD-AVVWRSLLASCRIHGDMERGQLVADQIMDLEPTSS 617
Query: 248 -------GMYVGC-------------------------WIEIQNKIYEFVSNEELTSE-- 273
MY+ WIE+++ ++ FV+ ++ E
Sbjct: 618 ASYVILYNMYLDAGELSLASKTRDLMKERGVKKEPGLSWIELRSGVHSFVAGDKSHPESN 677
Query: 274 -VSDKLAEIEENMKELGFVLNRSLYQTKMK--------------AVALGLISFPHGMPTR 318
+ KLAE+ +++L N S + AVA G+I P P R
Sbjct: 678 AIYKKLAEMLSKIEKLANTDNASTGSDGISSSEQNLVGCHSEKIAVAFGMIHLPQSAPIR 737
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
V+K++ +C HS + +S RE++++D FHHF+ G CSC D
Sbjct: 738 VMKNLRVCRDCHSTMKLISGSENREIILRDGIRFHHFRGGSCSCGD 783
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
++ IL +C G Q + K +G+ LI++ S G ++D F+S
Sbjct: 314 FTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRS 373
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
P+++ ++WT +IS V + +AL LF++
Sbjct: 374 LPKQDIVTWTSMISGCVQNELFEKALRLFQE 404
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D ++ L +C + L G A GL + + N L ++ + CG++ +A
Sbjct: 101 VDRFTYAAALAACSRALDLRTGKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEARRV 160
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
F + E + +SW ++S V G E L +F
Sbjct: 161 FDAAEEHDDVSWNSLLSGYVRAGAREETLKVF 192
>gi|125535994|gb|EAY82482.1| hypothetical protein OsI_37700 [Oryza sativa Indica Group]
Length = 584
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 118/416 (28%), Positives = 192/416 (46%), Gaps = 55/416 (13%)
Query: 2 KLCSLISDVEI-PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
KL I D + WN ++ + E E+ +Q+ DS + L++C
Sbjct: 165 KLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYREMQVAQVVPDSATFVTTLSACAQAG 224
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L++G + + + + +G+ L+N+ +RCG + A F E+N ++WT +I+
Sbjct: 225 ALDLGREVERRIVSDQMDVSVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIA 284
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
HGH EA+ LF + + N TF + L A A GLV E F SM+ VY +
Sbjct: 285 GYGMHGHGCEAIKLFHLMRLEGPTPNDVTFVAVLAACAHAGLVNEGRSAFDSMKRVYGLV 344
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
P EHY MV+ GRAG+ ++ ++FI+ +PG+ P +W +L + ++H + L +
Sbjct: 345 PRAEHYCSMVDMYGRAGLLDDAMQFIRDSIPGEPGPEVWTAMLGACKMHKNFNLGVEVAE 404
Query: 241 KLLELDP----------GMY------------------------VG-CWIEIQNKIYEFV 265
+L+ L+P +Y +G IE+ + F
Sbjct: 405 RLIALEPENPSHRVLLSNIYALSGKMNHVEKVRNVMIKRRLKKQIGYSLIELGGTSHLFR 464
Query: 266 SNE---ELTSEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALG 307
E + T E+ L E+ + + G+V Y ++ AVA G
Sbjct: 465 MGEKSHQQTREIYQYLEELIHRISDAGYVPETDSVLHELEEEEREVALRYHSEKLAVAYG 524
Query: 308 L-ISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
L +S P RVIK++ +CG H A +FMS++ RE++V+D FHHFKDGKCSC
Sbjct: 525 LMMSSGSTTPIRVIKNLRICGDCHLAIKFMSSVESREIIVRDKHRFHHFKDGKCSC 580
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G A+ G S V L+ + S+CG++ A F + +++ ++W +IS
Sbjct: 125 LRTGMAVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISG 184
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+G A++++++ Q + TF + L A A G
Sbjct: 185 YEQNGLAERAIEVYREMQVAQVVPDSATFVTTLSACAQAG 224
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 187/375 (49%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ Y+I L++C L+ G + Y++ G + +G L+++ ++CG I+ A+ F
Sbjct: 306 NDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVF 365
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
T EK L W+ +I HGH +AL F+ ++ T + F + L A + G V
Sbjct: 366 HETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVN 425
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F +M Y IEPS +HY+++V+ LGRAG +E L+FI+ + P ++W L
Sbjct: 426 EGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAM-PITPDFVVWGALFC 484
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW------------------ 254
+ R H ++++A+ A KLL+L+P G YV G W
Sbjct: 485 ACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKD 544
Query: 255 -----IEIQNKIYEFVSNEELTS---EVSDKLAEIEENMKELGF------VLNRSL---- 296
IE+ +K++ FV+ + + E+ KL EI + +E G+ VL+
Sbjct: 545 PGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAREKGYTKEIECVLHNIEEEEK 604
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ A+A G++S G R++K++ +C HS ++ S + +RE++++D
Sbjct: 605 EEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDCHSFMKYASKMSKREIILRDMKR 664
Query: 352 FHHFKDGKCSCKDAY 366
FHHF DG CSC D +
Sbjct: 665 FHHFNDGVCSCGDYW 679
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N LIN + G + A F PEKN +SWT +++ +G P +AL+ F
Sbjct: 245 NSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGAR 304
Query: 145 MNPTTFRSALKAYALMGLVGEAYRL 169
N T SAL A A +G + R+
Sbjct: 305 PNDYTIVSALSACAKIGALDAGLRI 329
>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Glycine max]
Length = 911
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/408 (26%), Positives = 190/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ C + ++Y + ++Q +S +IC +L +C LL +G + +
Sbjct: 505 VSWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTTICTLLRACAGSSLLKIGEEIHCF 564
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G + + LI++ + GK+ A F++ EK W ++ +GH E
Sbjct: 565 SMRHGFLDDIYIATALIDMYGKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEV 624
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LF + + + TF + L GLV + ++ F SM+ Y+I P+ EHYS MV+
Sbjct: 625 FTLFDEMRKTGVRPDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYNINPTIEHYSCMVD 684
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
LG+AG +E L+FI VP K IW +L + R+H D+K+A+ A LL L+P
Sbjct: 685 LLGKAGFLDEALDFIHA-VPQKADASIWGAVLAACRLHKDIKIAEIAARNLLRLEPYNSA 743
Query: 248 ------GMY-------------------------VGCWIEIQNKIYEFVS---NEELTSE 273
+Y V WI+++ I+ F + + E
Sbjct: 744 NYALMMNIYSTFDRWGDVERLKESMTALGVKIPNVWSWIQVKQTIHVFSTEGKSHPEEGE 803
Query: 274 VSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPTR 318
+ +L ++ +K+LG+VL+ + L T+ A+ GL+ G P R
Sbjct: 804 IYFELYQLISEIKKLGYVLDINCVHQNIDDSEKEKVLLSHTEKLAMTYGLMKTKGGSPIR 863
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K+ +C H+ +++S RE+ ++D G FHHF +G+CSCKD +
Sbjct: 864 VVKNTRICHDCHTTAKYISLARNREIFLRDGGRFHHFMNGECSCKDRW 911
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 80/161 (49%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ A ++++ +E EL R+Q +I +L +C LN G Q Y+
Sbjct: 200 WNTIVMANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVI 259
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ G +S+ ++ N ++++ SR +++ A +AF ST + NS SW IIS+ + + A D
Sbjct: 260 RFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDCLNGAWD 319
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174
L ++ + + T+ S L + L G F S++
Sbjct: 320 LLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNFRSLQ 360
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 80/205 (39%), Gaps = 1/205 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN LL + YE V +Q DS SI L + + N+G + Y
Sbjct: 334 ITWNSLLSGHLLQGSYENVLTNFRSLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIHGY 393
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + L V L++ + +D A++ F T KN +W +IS G A
Sbjct: 394 IMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNA 453
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L + + T+ S + Y++ G EA + ++ + + P+ ++ M+
Sbjct: 454 EKLLNQMKEEGIKPDLVTWNSLVSGYSMSGRSEEALAVINRIKSL-GLTPNVVSWTAMIS 512
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCP 216
+ + + L+F + + P
Sbjct: 513 GCCQNENYMDALQFFSQMQEENVKP 537
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
DS ++ +L CL + L +G + A + KRG + LIN+ + ID A+
Sbjct: 129 FDSKALTVVLKICLALMELWLGMEVHACLVKRGFHVDVHLSCALINLYEKYLGIDGANQV 188
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
F TP + W I+ A + +AL+LF+ Q
Sbjct: 189 FDETPLQEDFLWNTIVMANLRSEKWEDALELFRRMQ 224
>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 129/424 (30%), Positives = 204/424 (48%), Gaps = 66/424 (15%)
Query: 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQL-----CCGFIDSYSICDILNSCL 57
C++ + + W+ ++ AC AK+ EM + LE QL C +S ++ ++L +C
Sbjct: 241 FCAMPTKNFVSWSAMI-ACF-AKN-EMPMKALELFQLMMFEACNSVPNSVTMVNMLQACA 297
Query: 58 NPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTF 117
L G Y+ +R L S V N LI + RCG++ F + +++ +SW
Sbjct: 298 GLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNS 357
Query: 118 IISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVY 177
+IS HG +A+ +F++ + S + +F + L A + GLV E LF SM Y
Sbjct: 358 LISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKY 417
Query: 178 HIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI--VPGKLCPLIWRTLLLSSRVHGDMKLA 235
I P EHY+ MV+ LGRA E ++ I+ + PG P +W +LL S R+H +++LA
Sbjct: 418 RIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPG---PTVWGSLLGSCRIHCNVELA 474
Query: 236 KYALDKLLELDP---GMYV-------------------------------GC-WIEIQNK 260
+ A L EL+P G YV GC WIE++ K
Sbjct: 475 ERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRK 534
Query: 261 IYEFVSNEELTSEVSD---KLAEIEENMKELGFV--LNRSLY-------------QTKMK 302
+Y FVS +E ++ + L ++ MK G+V N LY ++
Sbjct: 535 VYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKL 594
Query: 303 AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
AVA GLI+ G R+ K++ +C H+ +F+S RE++V+D FHHF+DG CSC
Sbjct: 595 AVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFRDGVCSC 654
Query: 363 KDAY 366
D +
Sbjct: 655 GDYW 658
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 61/153 (39%), Gaps = 6/153 (3%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICD-ILNSCLNPILLN 63
+LI+D+ N L+++ K + + LL CC + + ++ SC L+
Sbjct: 41 NLINDINSNNNQLIQSLCKGGNLKQALHLL-----CCEPNPTQQTFEHLIYSCAQKNSLS 95
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G + G P + LIN+ G ID A F T E+ W + A
Sbjct: 96 YGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALA 155
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
GH E LDL+ W T + T+ LKA
Sbjct: 156 MVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKA 188
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL----LNVGTQAQ 69
WN L +A + + +L ++ D ++ +L +C+ L L G +
Sbjct: 147 WNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIH 206
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
A++ + G ++ V L+++ ++ G + A+ F + P KN +SW+ +I+ + P
Sbjct: 207 AHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPM 266
Query: 130 EALDLFK 136
+AL+LF+
Sbjct: 267 KALELFQ 273
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 187/376 (49%), Gaps = 56/376 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ +L++C L G +Y+ ++ L +G L++ ++CG I DA AF
Sbjct: 372 NDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAF 431
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+S P +N+ +WT +I ++G EAL+LF TF L A + LV
Sbjct: 432 ESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVE 491
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E R F SM + Y I P EHY MV+ LGRAG+ +E +FI+ + P + ++WR LL
Sbjct: 492 EGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNM-PIEPNAVVWRALLS 550
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMY---------VGCW------------------ 254
+ VH ++++ + AL +++ LDP G Y VG W
Sbjct: 551 ACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKI 610
Query: 255 -----IEIQNKIYEFVSNE----ELTSEVSDKLAEIEENMKELGFVLNRS---------- 295
IE++ I+EF + + +LT E+ +K+ E+ EN+K +G++ N +
Sbjct: 611 PGCSLIELEGTIFEFFAEDSEHPQLT-EIYEKVHEMIENIKMVGYIPNTADARLDVDEYE 669
Query: 296 -----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
+ ++ A+A GL+ G R+ K++ +C HSA + +S + RE++V+D
Sbjct: 670 KQVSVSHHSEKLAIAFGLMKSRPGATIRLSKNLRVCIDCHSATKLISKVYNREIIVRDRN 729
Query: 351 SFHHFKDGKCSCKDAY 366
FHHFKDG CSC D +
Sbjct: 730 RFHHFKDGLCSCNDYW 745
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 70/150 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ +K D++ V E+ + + D ++ + +C N+G Y
Sbjct: 238 IAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEY 297
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
++G++ + L+++ ++CG++D A F ++ ++W+ +IS EA
Sbjct: 298 AEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREA 357
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
L +F + Q + N T S L A A++G
Sbjct: 358 LAIFNEMQGTEVNPNDVTMVSVLSACAVLG 387
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 14 WNLLLKACIKAKDYE-MVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
+N+L+++ ++A E +H +E + D +++ + + SC L+VG QAY
Sbjct: 138 YNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYA 197
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
KRG + V N LI++ + CG + A + F + K ++W +I+ V +G E +
Sbjct: 198 FKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVV 257
Query: 133 DLFK 136
++FK
Sbjct: 258 EMFK 261
>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
Length = 548
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 177/375 (47%), Gaps = 53/375 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D ++ I+ C + QA A + + G S L++ S+ G+I+DA
Sbjct: 175 MDHFTFSMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHV 234
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F KN +SW +I NHG SEA++LF+ + N TF + L A + GL
Sbjct: 235 FDKMASKNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLS 294
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ +F SM I+P HY+ M+E +GR G+ +E L I+G P K +W LL
Sbjct: 295 ERGWEIFQSMGRDNRIKPRAMHYACMIELMGREGLLDEALALIRG-APFKPTANMWAALL 353
Query: 224 LSSRVHGDMKLAKYALDKLLELDP----------GMY----------------------- 250
+ RV+ + +L K+A +KL ++P +Y
Sbjct: 354 TACRVNENFELGKFAAEKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRM 413
Query: 251 --VGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKEL---GFVLNRS---------- 295
V WIE++ + + F+S + + + ++++ M E+ G+V N+
Sbjct: 414 RPVCSWIEVKRRPHVFLSGDNRHPQRKEIYQKVDKLMLEISKYGYVPNQKTLLPDVDEQE 473
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
LY ++ A+A GLIS P+ P ++++ +CG H A + ++ + RE+V++D G
Sbjct: 474 ERVRLYHSEKLAIAFGLISTPYWAPLQIVQGHRICGDCHEAIKLIARVTGREIVIRDAGR 533
Query: 352 FHHFKDGKCSCKDAY 366
FHHFK G CSC+D +
Sbjct: 534 FHHFKHGHCSCEDYW 548
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 71/155 (45%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + D+ L + S++ ++ + L+++G Q A
Sbjct: 42 VSWNTIISGLVDVGDFMEAFRLFLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQLHAC 101
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G+ V LI++ S+CG I+DA F+ PEK ++ W II+ HG+ EA
Sbjct: 102 TLKMGIGDDIFVSCALIDMYSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEA 161
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
LD++ + + M+ TF ++ A + V A
Sbjct: 162 LDMYYEMRDSGVKMDHFTFSMIVRICARLASVEHA 196
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
+++ G + YM R L+ H +CG + DA F PE+N +SW IIS
Sbjct: 1 MIDNGFEFDQYMRNRVLLMH-----------VKCGMMIDARRLFDEMPERNLVSWNTIIS 49
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
V+ G EA LF + ++ TF ++A A + L+
Sbjct: 50 GLVDVGDFMEAFRLFLNMWEEFSDAGSFTFAVMIRASAGLELI 92
>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
Length = 595
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 190/408 (46%), Gaps = 55/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLE--RIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQ 69
+ WN+L+ C + + + +L E R + D + +L +C + L+ G Q
Sbjct: 186 VAWNVLISCCARNRRTKDALKLFEEMRGRDSGAEPDDVTCILLLQACTSLGALDFGEQVW 245
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
AY + G + V N LI + SRCG +D A F TP+K+ ++W+ +IS +G
Sbjct: 246 AYAEEHGYGAKLKVRNSLIAMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGD 305
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
+A+ F++ + + TF L A + GLV E +R F M Y ++P+ HY +
Sbjct: 306 DAISAFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCI 365
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---D 246
V+ +GRAG+ +E E + + IWRTLL + R+HG + L + + L+EL
Sbjct: 366 VDLMGRAGLLDEAYELVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVISNLIELKAQQ 425
Query: 247 PGMYV---------GCW-----------------------IEIQNKIYEFVSNEELTS-- 272
G YV G W +E ++YEF+++++
Sbjct: 426 AGDYVLLLNTYAAVGEWSKVSEVRKLMQEKGIQTTPGCTTVEHNGEVYEFIADDDAHPRK 485
Query: 273 -EVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMP 316
E+ +KL EI + ++ G+V N S Y ++ A+A L+ P P
Sbjct: 486 VEIYEKLNEINKQLRIAGYVPNVSSELHDLDSEGKESALTYHSEKLAIAFALLVTPQNRP 545
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
R+ K++ +C H+ + S I R ++V+D FHHF+ GKCSC D
Sbjct: 546 IRLAKNLRVCVDCHNFTKVFSGIYNRLVIVRDRTRFHHFQGGKCSCND 593
>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 721
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 168/341 (49%), Gaps = 57/341 (16%)
Query: 82 AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWR 141
+V N LI++ + G + DA F PE N++S+ +I HGH +EAL L++
Sbjct: 382 SVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDS 441
Query: 142 YTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEE 201
+ N TF + L A A G V E F +M+E + IEP EHYS M++ LGRAG EE
Sbjct: 442 GIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEE 501
Query: 202 VLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP----------GMYV 251
FI + P K + W LL + R H +M LA+ A ++L+ + P MY
Sbjct: 502 AERFIDAM-PYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYA 560
Query: 252 ------------------------GC-WIEIQNKIYEFVSNE---ELTSEVSDKLAEIEE 283
GC WIE++ K + FV+ + + EV++ L E+ +
Sbjct: 561 DARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMK 620
Query: 284 NMKELGFVLNRSLYQTKMK------------------AVALGLISFPHGMPTRVIKSVGM 325
MK++G+V+++ K AVA GL+S G V+K++ +
Sbjct: 621 KMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRI 680
Query: 326 CGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
CG H+A +FMS + RE++V+D FH FKDGKCSC D +
Sbjct: 681 CGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 68/146 (46%), Gaps = 3/146 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N L+ A++ L +R++ +D +++ ++ +C + + ++ Q +
Sbjct: 106 VSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRV--DLIKQLHCF 163
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE-KNSLSWTFIISARVNHGHPSE 130
G S+ +V N + S+ G + +A F E ++ +SW +I A H ++
Sbjct: 164 SVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAK 223
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKA 156
AL L+K+ ++ ++ T S L A
Sbjct: 224 ALALYKEMIFKGFKIDMFTLASVLNA 249
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
E+ WN ++ A + K+ L + + ID +++ +LN+ + L G Q
Sbjct: 205 EVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHG 264
Query: 71 YMTKRGLISHPAVGNCLININSRCGKID---DADLAFKSTPEKNSLSWTFIISA-RVNHG 126
+ K G + VG+ LI+ S+CG D D++ F+ + + W +IS +N
Sbjct: 265 KLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEE 324
Query: 127 HPSEALDLFKDKQ 139
EA+ F+ Q
Sbjct: 325 LSEEAVKSFRQMQ 337
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 181/380 (47%), Gaps = 64/380 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ +L++ L +G + Y+ K GL + V N L+++ ++CG I +A F
Sbjct: 218 DGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVF 277
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
E+N++SWT +I +G EAL+LFK+ + + + TF L A + G++
Sbjct: 278 SEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLD 337
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F M+E I P EHY MV+ L RAG+ ++ E+I+ + P + +IWRTLL
Sbjct: 338 EGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNM-PVQPNAVIWRTLLG 396
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV---------GCWIEIQ-------------- 258
+ +HG + L + A LL L+P G YV W ++Q
Sbjct: 397 ACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKT 456
Query: 259 ---------NKIYEFVSN-----------------------EELTSEVSDKLAEIEENMK 286
N++YEF E ++ LA+IEE K
Sbjct: 457 PGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEK 516
Query: 287 ELGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVV 346
E Y ++ A+A L++ P G P RV+K++ +C H A + ++ I +RE+V+
Sbjct: 517 EQALS-----YHSEKVAIAFMLLNTPPGTPIRVMKNLRVCADCHMAIKLIAKIYDREIVI 571
Query: 347 KDPGSFHHFKDGKCSCKDAY 366
+D FHHF+ G CSCKD +
Sbjct: 572 RDRSRFHHFRGGSCSCKDYW 591
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/406 (26%), Positives = 193/406 (47%), Gaps = 54/406 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ +A + L +Q+ D ++ +L++C + L +G ++Y
Sbjct: 299 VTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESY 358
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ ++ ++ + N LI++ ++CG +D A F+ + +SWT +I HG EA
Sbjct: 359 IERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEA 418
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ +F + + + F L A + GLV + + F +ME ++ I P EHY MV+
Sbjct: 419 VLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVD 478
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM-- 249
L RAG E LEF++ + P + +IWR+++ + G++KL + +L+ +P
Sbjct: 479 MLSRAGRVNEALEFVRAM-PVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHES 537
Query: 250 -YV--------------------------------GCWIEIQNKIYEFVSNE---ELTSE 273
YV IE+ N+IYEFV+ + + E
Sbjct: 538 NYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKE 597
Query: 274 VSDKLAEIEENMKELGFVLNRS--------------LYQTKMK-AVALGLISFPHGMPTR 318
+ + + E+ +K G+V S LY+ K A+A L+S P G P R
Sbjct: 598 IYEMVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPGTPIR 657
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
++K++ +C HSA +F+S + RE+VV+D FHHFK+G CSC D
Sbjct: 658 IVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGD 703
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 97/212 (45%), Gaps = 14/212 (6%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC------GKID 98
+ ++ +L +C + L +G A M K G P V N L+++ C G +
Sbjct: 226 NKFTFPFVLKACAGMMRLELGGAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVS 285
Query: 99 DADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
A F +P K+S++W+ +I G+ + A+ LF++ Q + T S L A A
Sbjct: 286 -AKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACA 344
Query: 159 LMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLI 218
+G + E + S E +I S E + +++ + G + ++ + + K+ ++
Sbjct: 345 DLGAL-ELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREM---KVRTIV 400
Query: 219 -WRTLLLSSRVHGDMKLAKYALDKLLE--LDP 247
W ++++ +HG A D+++E +DP
Sbjct: 401 SWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDP 432
>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Brachypodium distachyon]
Length = 818
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 181/374 (48%), Gaps = 54/374 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+ +++ +L++ + LL G + A K G S + N L+++ +RCG ++DA A
Sbjct: 444 VSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRA 503
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F + N +SWT IIS HG+ +AL +F D N T+ + L A + +GLV
Sbjct: 504 FDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLV 563
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E F SM++ + + P EHY+ +V+ L R+G+ EE +FI + P K L+W+TLL
Sbjct: 564 KEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEM-PCKADALVWKTLL 622
Query: 224 LSSRVHGDMKLAKYALDKLLEL---DPGMYV----------------------------- 251
+ R +G+ ++ + A + ++ L DP YV
Sbjct: 623 SACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDKNLSK 682
Query: 252 ---GCWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSLYQTKMK--- 302
W+++ N I+EF + + L ++ KL + +K++G+V + S+ M
Sbjct: 683 ETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDIGYVPDTSIVLHDMSEEL 742
Query: 303 ------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
AVA GLI+ P R+ K++ +C HSA +++S RE++++D
Sbjct: 743 KEQYLLQHSEKIAVAFGLITTSATKPMRIFKNLRVCADCHSAIKYISKSTGREIILRDSN 802
Query: 351 SFHHFKDGKCSCKD 364
FH KDG CSC +
Sbjct: 803 RFHRMKDGICSCGE 816
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 6/158 (3%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNV 64
LI + W LL+ ++A V EL + L GF D YS+ ++++C + +
Sbjct: 206 LIERTSVVWTLLITRYVQAGCASKVVELFLHM-LDDGFEPDGYSMSSMISACTELGSVRL 264
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCG---KIDDADLAFKSTPEKNSLSWTFIISA 121
G Q + + GL+S V L+++ ++ ++ A FK+ P N +SWT +IS
Sbjct: 265 GQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISG 324
Query: 122 RVNHG-HPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
V G + + LF++ N T+ + LKA A
Sbjct: 325 YVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACA 362
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 51 DILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK 110
++L +C N + G Q A++ K + VGN L+++ + G +++A AF E
Sbjct: 356 NLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYET 415
Query: 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF 170
N LS + + N+ S ++ D ++ TF S L A A +GL+ + +L
Sbjct: 416 NILSMSPDVETERNNASCSSKIEGMDD------GVSTFTFASLLSAAASVGLLTKGQKLH 469
Query: 171 -LSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV 202
LSM+ + + + +V R G E+
Sbjct: 470 ALSMKAGFRSDQGISNS--LVSMYARCGYLEDA 500
>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
Length = 522
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/376 (29%), Positives = 186/376 (49%), Gaps = 56/376 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ ++++C L+ G A Y+ K L + VG LI++ S+CG +D A F
Sbjct: 149 NEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLF 208
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P +++L + +I HG+ +ALDLFK + + T + + + +GLV
Sbjct: 209 DQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVE 268
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E +F SM+EVY +EP EHY +V+ LGRAG E E + + P K +IWR+LL
Sbjct: 269 EGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNM-PMKPNAVIWRSLLG 327
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
++RVHG++++ + L L++L+P G YV
Sbjct: 328 AARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKV 387
Query: 252 --GCWIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVLNRSL---------- 296
+E+ ++EF+ ++ + E+ KL E+ + E G R+L
Sbjct: 388 PGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYGHK-PRTLEVLFDIEEEE 446
Query: 297 ------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
Y ++ A+A LI+ H P R+IK++ +CG H++ + +S I ERE++V+D
Sbjct: 447 KEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRN 506
Query: 351 SFHHFKDGKCSCKDAY 366
FHHFK+G CSC D +
Sbjct: 507 RFHHFKEGACSCSDYW 522
>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
Length = 630
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 113/416 (27%), Positives = 204/416 (49%), Gaps = 60/416 (14%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
+++ I WN ++ + ++ EL +R++ + ++ +L +C LL +G
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279
Query: 66 TQAQAYMTK--RGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
QA ++ K + LI + N L+++ +CG ++DA F E++ ++W+ +IS
Sbjct: 280 MQAHVHIVKYDQDLI----LNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLA 335
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
+G+ EAL LF+ + T N T L A + GL+ + + F SM+++Y I+P
Sbjct: 336 QNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVR 395
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
EHY M++ LG+AG ++ ++ + + + + WRTLL + RV +M LA+YA K++
Sbjct: 396 EHYGCMIDLLGKAGKLDDAVKLLNEM-ECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVI 454
Query: 244 ELDP---GMYV-------------------------------GC-WIEIQNKIYEFV--- 265
LDP G Y GC WIE+ +I+ F+
Sbjct: 455 ALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGD 514
Query: 266 SNEELTSEVSDKLAEIEENMKELGFV--------------LNRSL-YQTKMKAVALGLIS 310
++ EVS KL ++ + +G+V + SL + ++ A+A GL++
Sbjct: 515 NSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMT 574
Query: 311 FPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P R+ K++ +CG H C+ S + R +V++ P +HHF+DGKCSC D +
Sbjct: 575 LPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 20/218 (9%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSC---LNPILLNVGTQA 68
I W ++ A K K ++ ELL + + Y+ +L SC + +L+ G
Sbjct: 128 ISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCG--- 184
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
+ K GL S V + LI++ ++ G+ +DA F +++ W II +
Sbjct: 185 ---IIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRS 241
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY-- 186
AL+LFK + T S L+A + L L L M+ HI ++
Sbjct: 242 DVALELFKRMKRAGFIAEQATLTSVLRACTGLAL------LELGMQAHVHIVKYDQDLIL 295
Query: 187 -SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ +V+ + G E+ L + + + W T++
Sbjct: 296 NNALVDMYCKCGSLEDALRVFNQMKERDV--ITWSTMI 331
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 196/408 (48%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + ++ +Q+ ++ S+ +L++C + +L+ G AY
Sbjct: 210 VTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAY 269
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + +G L+++ ++CG +D A F E+N +W+ I +G E+
Sbjct: 270 VERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEES 329
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LDLF D + N TF S LK +++GLV E + F SM VY I P EHY +MV+
Sbjct: 330 LDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVD 389
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DPG 248
GRAG +E L FI + P + W LL + R++ + +L + A K++EL + G
Sbjct: 390 MYGRAGRLKEALNFINSM-PMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDKNDG 448
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTSE 273
YV GC IE+ +++EF+ ++ E
Sbjct: 449 AYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSHPRYDE 508
Query: 274 VSDKLAEIEENMKELGFVLNRS--LY-------------QTKMKAVALGLISFPHGMPTR 318
+ KL EI + ++ G+V N + L+ ++ A+A GLIS +P R
Sbjct: 509 IEMKLEEISKCLRLSGYVANTNPVLFDIEEEEKEDALSKHSEKVAIAFGLISLKGVVPIR 568
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+ ++ +C H+ + +S I RE++V+D FHHFKDG+CSCKD +
Sbjct: 569 VVMNLRICWDCHNVAKMISKIFNREIIVRDRNRFHHFKDGECSCKDYW 616
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 1/123 (0%)
Query: 87 LININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN 146
++N ++CG ID A F PE++ ++W +I+ G EALD+F Q +N
Sbjct: 184 MLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLN 243
Query: 147 PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFI 206
+ L A + ++ R + E Y + + + +V+ + G + ++
Sbjct: 244 EVSMVLVLSACTHLQVLDHG-RWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVF 302
Query: 207 KGI 209
G+
Sbjct: 303 WGM 305
>gi|326507562|dbj|BAK03174.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 174/374 (46%), Gaps = 55/374 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
++ +++ I+ C L +G Q A K L + P VG+ L+++ S+CG +D A
Sbjct: 225 VNDFTVSCIVRVCAAATLFELGAQVHARSIKTALDASPFVGSSLVSLYSKCGLVDCAYRV 284
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F + PE+N W ++ A HGH S A + F Q N TF L A + GLV
Sbjct: 285 FSAAPERNLGIWNAVLIASAQHGHTSTAFERFTKMQHAGFRPNFITFLCLLTACSHAGLV 344
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E R F M+E Y IEP EHY+ MV+ LGR G E L+ I+ + P + +W LL
Sbjct: 345 DEGKRYFSLMKE-YRIEPEVEHYAAMVDLLGRVGRITEALDLIESM-PMEPPDSVWGALL 402
Query: 224 LSSRVHGDMKLAKYALDKLLELD----------------PGMYVGC-------------- 253
++ R+ D A A +L E G +V
Sbjct: 403 MACRMFKDADTAAIAAKRLFETGSRSSGAHMLLSSTYAAAGRHVDAALARKAMRDAGIRK 462
Query: 254 -----WIEIQNKIYEFVSN---EELTSEVSDKLAEIEENMKELGFVLNRSL--------- 296
W+E +++ FVSN ++E+ + L ++ E M G+V + S
Sbjct: 463 ETGLSWLEAAGEVHTFVSNCRRHPRSNEIYNVLEKVGEKMAVAGYVADTSAVVKDVDRDE 522
Query: 297 ------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
Y ++ A+ALGL+ P G+P RV+K++ +C H+A +++S R +V++D
Sbjct: 523 KCASLGYHSERLAIALGLLIVPEGVPIRVMKNLRVCDDCHNAVKYLSKCTGRVVVLRDNR 582
Query: 351 SFHHFKDGKCSCKD 364
FH F+DG CSC D
Sbjct: 583 RFHRFEDGLCSCGD 596
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG-HPSEALDLFKDKQWR 141
VG+ ++++ ++CG + DA F PE+N +SW+ +I + G HPS AL +F+
Sbjct: 163 VGSAVLDMYAKCGNLSDARRVFDEMPERNVVSWSALIGGYADAGMHPS-ALCIFRSALEE 221
Query: 142 YTSMNPTT 149
+N T
Sbjct: 222 AVQVNDFT 229
>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Vitis vinifera]
Length = 590
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/376 (29%), Positives = 186/376 (49%), Gaps = 56/376 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ ++++C L+ G A Y+ K L + VG LI++ S+CG +D A F
Sbjct: 217 NEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLF 276
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P +++L + +I HG+ +ALDLFK + + T + + + +GLV
Sbjct: 277 DQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVE 336
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E +F SM+EVY +EP EHY +V+ LGRAG E E + + P K +IWR+LL
Sbjct: 337 EGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNM-PMKPNAVIWRSLLG 395
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
++RVHG++++ + L L++L+P G YV
Sbjct: 396 AARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKV 455
Query: 252 --GCWIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVLNRSL---------- 296
+E+ ++EF+ ++ + E+ KL E+ + E G R+L
Sbjct: 456 PGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYGHK-PRTLEVLFDIEEEE 514
Query: 297 ------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
Y ++ A+A LI+ H P R+IK++ +CG H++ + +S I ERE++V+D
Sbjct: 515 KEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRN 574
Query: 351 SFHHFKDGKCSCKDAY 366
FHHFK+G CSC D +
Sbjct: 575 RFHHFKEGACSCSDYW 590
>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 868
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 122/421 (28%), Positives = 194/421 (46%), Gaps = 61/421 (14%)
Query: 2 KLCSLISDVEI-PWNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCL- 57
K+ S I D +I W+ +L + + E ++ +L G I + ++ ILN C
Sbjct: 449 KVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFG--ELTKGGIKPNEFTFSSILNVCAA 506
Query: 58 NPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTF 117
+ G Q + K L S V + L+ + ++ G I+ A+ FK EK+ +SW
Sbjct: 507 TNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNS 566
Query: 118 IISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVY 177
+IS HG +ALD+FK+ + R M+ TF A GLV E + F M
Sbjct: 567 MISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDC 626
Query: 178 HIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKY 237
I P++EH S MV+ RAG E+ ++ I+ + P IWRT+L + RVH +L +
Sbjct: 627 KIAPTKEHNSCMVDLYSRAGQLEKAMKVIENM-PNPAGSTIWRTILAACRVHKKTELGRL 685
Query: 238 ALDKLLELDP----------GMYVG-------------------------CWIEIQNKIY 262
A +K++ + P MY WIE++NK Y
Sbjct: 686 AAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTY 745
Query: 263 EFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAV 304
F++ + L ++ KL ++ +K+LG+ + S ++ A+
Sbjct: 746 SFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAI 805
Query: 305 ALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHF-KDGKCSCK 363
A GLI+ P G P +IK++ +CG H + ++ I ERE+VV+D FHHF DG CSC
Sbjct: 806 AFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCG 865
Query: 364 D 364
D
Sbjct: 866 D 866
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 62/144 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ + + V L R+Q +S++ L + G Q
Sbjct: 160 VTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTV 219
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL V N LIN+ +CG + A + F T K+ ++W +IS +G EA
Sbjct: 220 VVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEA 279
Query: 132 LDLFKDKQWRYTSMNPTTFRSALK 155
L +F + Y ++ ++F S +K
Sbjct: 280 LGMFYSMRLNYVRLSESSFASVIK 303
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 43/105 (40%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Q K G + +VG L++ + D F E+N ++WT +IS
Sbjct: 112 GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYAR 171
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
+ E L LF Q T N TF +AL A G+ G ++
Sbjct: 172 NSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQV 216
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 187/408 (45%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + YE +L ++ ++ + C L++C + L +G Q
Sbjct: 344 VSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQ 403
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G VGN L+ + +CG ID+A F+ K+ +SW +++ HG +A
Sbjct: 404 VVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQA 463
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L +F+ + T L A + GL F SM + Y I P+ +HY+ M++
Sbjct: 464 LTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMID 523
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG EE I+ + P + W LL +SR+HG+M+L + A + + +++P G
Sbjct: 524 LLGRAGCLEEAQNLIRNM-PFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSG 582
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEELTSEVSD 276
MYV W+E+QNKI+ F + E
Sbjct: 583 MYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGR 642
Query: 277 KLAEIEE---NMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
A +EE MK G+V + L Y ++ AVA G+++ P G P R
Sbjct: 643 IYAFLEELDLKMKHEGYVSSTKLVLHDVEEEEKKHMLKYHSEKLAVAFGILTMPSGKPIR 702
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ +C H+A + +S I+ R ++V+D +HHF +G CSC+D +
Sbjct: 703 VMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFSEGICSCRDYW 750
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N ++ +R ++ DA + F S PEK+ +SW ++S V GH EA D+F R
Sbjct: 99 NLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFD----RMPH 154
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
N ++ L AY G + EA RLF S + I + ++ + M + +
Sbjct: 155 KNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISC-----NCLMGGYVKRNMLGDARQ 209
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGCWIEIQNKIYEF 264
I L + W T++ GD+ A+ +L E P V W + +Y +
Sbjct: 210 LFDQIPVRDL--ISWNTMISGYAQDGDLSQAR----RLFEESPVRDVFTWTAM---VYAY 260
Query: 265 VSNEEL--TSEVSDKLAEIEE 283
V + L V D++ + E
Sbjct: 261 VQDGMLDEARRVFDEMPQKRE 281
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 81 PAVGNCLININSRC--GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDK 138
P +G+ I I+ C G + A F P+++S+SW II+ +G EA+++ +
Sbjct: 310 PNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEM 369
Query: 139 QWRYTSMNPTTFRSALKAYA 158
+ S+N +TF AL A A
Sbjct: 370 KRDGESLNRSTFCCALSACA 389
>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
Length = 472
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 122/421 (28%), Positives = 194/421 (46%), Gaps = 61/421 (14%)
Query: 2 KLCSLISDVEI-PWNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCL- 57
K+ S I D +I W+ +L + + E ++ +L G I + ++ ILN C
Sbjct: 53 KVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFG--ELTKGGIKPNEFTFSSILNVCAA 110
Query: 58 NPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTF 117
+ G Q + K L S V + L+ + ++ G I+ A+ FK EK+ +SW
Sbjct: 111 TNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNS 170
Query: 118 IISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVY 177
+IS HG +ALD+FK+ + R M+ TF A GLV E + F M
Sbjct: 171 MISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDC 230
Query: 178 HIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKY 237
I P++EH S MV+ RAG E+ ++ I+ + P IWRT+L + RVH +L +
Sbjct: 231 KIAPTKEHNSCMVDLYSRAGQLEKAMKVIENM-PNPAGSTIWRTILAACRVHKKTELGRL 289
Query: 238 ALDKLLELDP----------GMYVG-------------------------CWIEIQNKIY 262
A +K++ + P MY WIE++NK Y
Sbjct: 290 AAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTY 349
Query: 263 EFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAV 304
F++ + L ++ KL ++ +K+LG+ + S ++ A+
Sbjct: 350 SFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAI 409
Query: 305 ALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHF-KDGKCSCK 363
A GLI+ P G P +IK++ +CG H + ++ I ERE+VV+D FHHF DG CSC
Sbjct: 410 AFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCG 469
Query: 364 D 364
D
Sbjct: 470 D 470
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/401 (27%), Positives = 187/401 (46%), Gaps = 55/401 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
E+ WN L+ + + E LL ++Q ++ +L++C + L G A
Sbjct: 255 EVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHA 314
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+M K GL +GN L+++ ++ G IDDA F + + +SW +++ HG E
Sbjct: 315 HMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKE 374
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
LD F+ N +F L A + GL+ E F M++ Y +EP HY V
Sbjct: 375 TLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFV 433
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGR G+ + FI+ + P + +W LL + R+H +M+L YA ++ ELDP
Sbjct: 434 DLLGRVGLLDRAERFIREM-PIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDS 492
Query: 248 -------GMYVGC-------------------------WIEIQNKIYEFVSNEEL---TS 272
+Y W+EI+N ++ FV+N+E
Sbjct: 493 GPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIK 552
Query: 273 EVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPT 317
E+ K EI +KE+G+V + S Y ++ A+A L++ P G P
Sbjct: 553 EIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPI 612
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDG 358
R+ K++ +CG H+A +F+S +++RE++V+D FH F+DG
Sbjct: 613 RIKKNIRVCGDCHAAIKFVSKVVDREIIVRDTNRFHRFRDG 653
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 24/210 (11%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ +++ +L + + L+ GTQ A+ K G S VG+ L+++ +RCG +D A LAF
Sbjct: 188 NHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAF 247
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN--PT--TFRSALKAYALM 160
P K+ +SW +IS G AL L W+ N PT T+ S L A A +
Sbjct: 248 DGMPTKSEVSWNALISGHARKGEGEHALHLL----WKMQRKNFQPTHFTYSSVLSACASI 303
Query: 161 GLVGE-----AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC 215
G + + A+ + ++ + I + +++ +AG ++ +V +
Sbjct: 304 GALEQGKWVHAHMIKSGLKLIAFIG------NTLLDMYAKAGSIDDAKRVFDRLVKPDVV 357
Query: 216 PLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
W T+L HG L K LD+ ++
Sbjct: 358 S--WNTMLTGCAQHG---LGKETLDRFEQM 382
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 77 LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
L +H + N ++N+ ++CG +DDA F P K+ ++WT +I+ + P +AL LF
Sbjct: 119 LDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFP 178
Query: 137 DKQWRYTSMNPTTFRSALKA 156
N T S LKA
Sbjct: 179 QMLRLGFQPNHFTLSSLLKA 198
>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
Length = 706
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/406 (27%), Positives = 180/406 (44%), Gaps = 56/406 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ A + E +Q D Y+ ++++C + VG Q
Sbjct: 302 IAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEVGKQVHRR 361
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ R + N L+N+ +CG +D A F T K S++W +I A H H +A
Sbjct: 362 LGDRAF-QVTELANSLVNMYGKCGILDVARSIFDKTA-KGSVTWNAMIGAYAQHSHEQQA 419
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+LF + + TF S L A A GL EA+ F+ M++ + + P HY MVE
Sbjct: 420 FELFLLMRLDGEEPSYITFMSVLSACANAGLPEEAHSYFVCMQQDHGVRPGGGHYGCMVE 479
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYV 251
+LG+AG + I+G+ P + L W + L + R HGDMK K+A + +DP
Sbjct: 480 SLGKAGRLSDAEALIQGM-PFEPDVLTWTSFLANCRSHGDMKRGKFAAKGAIRIDPEAST 538
Query: 252 G-----------------------------------CWIEIQNKIYEFVSNEE---LTSE 273
G I++ +YEF + ++ + E
Sbjct: 539 GYVALARIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPRSKE 598
Query: 274 VSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPTR 318
+ D+L +++ MK G+ + + ++ A+A G+IS G P R
Sbjct: 599 IFDELKRLDKEMKRAGYDPDMTHVAHDVEAGQKEPLLFAHSERLAIAFGIISTSQGTPLR 658
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
++K++ +CG H+ + S I RE++V+D FHHFK+G CSCKD
Sbjct: 659 IMKNLRVCGDCHAMTKLTSKITRREIIVRDSNRFHHFKNGSCSCKD 704
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 2/178 (1%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
++ SC L G + + + GL S V N L+ + +CG +++A L F++TP KN
Sbjct: 40 VIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKN 99
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
SWT +I+ HG EAL LF + + + +F +A+ A + A R
Sbjct: 100 VFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALH 159
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVH 229
++ Y + + + +V + G EE ++ + + +L + W ++ + H
Sbjct: 160 ALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMT--ELNAVSWNAMIAAFAEH 215
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
V N ++N+ +CG + DA+ FKS + + ++W +I+A HGH SEAL ++ Q
Sbjct: 272 VVNVILNMYGKCGCLQDAEAMFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEG 331
Query: 143 TSMNPTTFRSALKAYALMG 161
+ T+ S + A A +G
Sbjct: 332 VVPDDYTYVSVIDACATLG 350
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 102/276 (36%), Gaps = 63/276 (22%)
Query: 14 WNLLLKACIK--------AKDYEMVHELLERIQLCCGFIDSYSICDILNSC-LNPILLNV 64
W +L+ C + A YEM+ + ++ S S +N+C P L
Sbjct: 103 WTILITVCAQHGRSQEALALFYEMLKQGIQ--------PHSVSFTAAINACSAGPEFLPA 154
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G A + + G L+++ S+CG ++++ F+S E N++SW +I+A
Sbjct: 155 GRALHALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAE 214
Query: 125 HGHPSEALDLFKD--------------------------KQWRY-------TSMNPTTFR 151
H EAL + K RY T +
Sbjct: 215 HRRGLEALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGFDQDVVN 274
Query: 152 SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFI----- 206
L Y G + +A +F SM +P ++ M+ A + G E L F
Sbjct: 275 VILNMYGKCGCLQDAEAMFKSMS-----QPDVIAWNTMIAAYSQHGHTSEALRFYELMQE 329
Query: 207 KGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
+G+VP + +++ + GDM++ K +L
Sbjct: 330 EGVVPDD---YTYVSVIDACATLGDMEVGKQVHRRL 362
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/414 (28%), Positives = 193/414 (46%), Gaps = 60/414 (14%)
Query: 11 EIP-WNLLLKACIKAKDYEMVHELLERIQLC--CGFIDSYSICDILNSCLNPILLNVGTQ 67
+IP WN+L+ ++ + + +QL D ++ L++C +++G
Sbjct: 439 DIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEW 498
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
Y+ K + + + LI++ S+ G ++ A F S K+ W+ +I+ HG
Sbjct: 499 IHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGR 558
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
A++LF D Q N TF + L A + GLV E RLF ME VY + P +HYS
Sbjct: 559 GEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYS 618
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
MV+ LGRAG EE L+FI+G+ P +W LL + +HG+++LA+ A +LLE++P
Sbjct: 619 CMVDVLGRAGHLEEALKFIEGM-PLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEP 677
Query: 248 GMY------------VGCW-----------------------IEIQNKIYEFVSNEE--- 269
G + G W IEI ++EF+ +
Sbjct: 678 GNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHP 737
Query: 270 LTSEVSDKLAEIEENMKELGFVLNR-----------------SLYQTKMKAVALGLISFP 312
L+ ++ KL EI ++ G+V N L+ KM A+A GLI
Sbjct: 738 LSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHSEKM-AIAFGLIRAD 796
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C H+ + +S + R++V++D FHHF G CSC+D +
Sbjct: 797 SQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFSGGHCSCQDYW 850
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/254 (19%), Positives = 106/254 (41%), Gaps = 40/254 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ ++ + +L ER++ ++ ++ ++++C + L +G + Y
Sbjct: 309 VSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDY 368
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDA----------DLA------------------ 103
+ + ++ + V N I++ +CG+++ A D+
Sbjct: 369 IDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIA 428
Query: 104 ---FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP--TTFRSALKAYA 158
F S P K+ +W +IS G P EAL +F++ Q + P T S L A A
Sbjct: 429 RDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACA 488
Query: 159 LMGL--VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP 216
+G +GE ++ E I+ + + +++ ++G E+ +E I G
Sbjct: 489 QLGAMDIGEWIHGYIKKER---IQLNRNLATSLIDMYSKSGDVEKAIEVFHSI--GNKDV 543
Query: 217 LIWRTLLLSSRVHG 230
+W ++ +HG
Sbjct: 544 FVWSAMIAGLAMHG 557
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 3/148 (2%)
Query: 14 WNLLLKACIKAKD-YEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN+L++A + D + V + + + ++ ++ + VG
Sbjct: 207 WNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMA 266
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFK--STPEKNSLSWTFIISARVNHGHPSE 130
K V N LI+ + CG +D A L F+ K+ +SW +++ V G+P +
Sbjct: 267 IKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDK 326
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYA 158
ALDLF+ + N T S + A A
Sbjct: 327 ALDLFERMRNEGVHPNAVTMVSVMSACA 354
>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 751
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 177/375 (47%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ ++ +C N L G+Q + K P V + L+++ +CG D + F
Sbjct: 378 NEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLF 437
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ ++W ++ HG A++ F R N TF + LK + G+V
Sbjct: 438 DEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVE 497
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ F SME++Y + P EEHYS +++ LGRAG +E +FI + P + W + L
Sbjct: 498 DGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNM-PFEPNVFGWCSFLG 556
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
+ ++HGDM+ AK+A DKL++L+P G +V
Sbjct: 557 ACKIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKL 616
Query: 252 --GCWIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFV-------------LN 293
W++I+NK + F + E+ +KL + + +K +G+V L
Sbjct: 617 PGYSWVDIRNKTHVFGVEDWSHPQKKEIYEKLDNLLDQIKRIGYVPQTESVLIDMDDNLK 676
Query: 294 RSL--YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
L Y ++ AVA L++ P GMP V K++ +C HSA +F+S + ER ++V+D
Sbjct: 677 EKLLHYHSERIAVAFSLLTCPTGMPIIVKKNLRVCSDCHSALKFISKVTERNIIVRDISR 736
Query: 352 FHHFKDGKCSCKDAY 366
FHHF +G CSC D +
Sbjct: 737 FHHFSNGSCSCGDYW 751
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 122/309 (39%), Gaps = 31/309 (10%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ +K D++ ++ FID + +C L++C + G A
Sbjct: 243 VLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHAT 302
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSL-SWTFIISARVNHGHPSE 130
+ K G +GN L ++ S+ G + A F+ + S+ S T II V +
Sbjct: 303 ILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEK 362
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL F D + R N TF S +KA A + +L + + ++ + S +V
Sbjct: 363 ALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVK-FNFKRDPFVSSTLV 421
Query: 191 EALGRAGMFEEVLEFIKGIV-PGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE--LDP 247
+ G+ G+F+ ++ I P ++ W TL+ HG + A + ++ L P
Sbjct: 422 DMYGKCGLFDHSIQLFDEIENPDEIA---WNTLVGVFSQHGLGRNAIETFNGMIHRGLKP 478
Query: 248 ------GMYVGC-----------WIEIQNKIYEFVSNEELTSEVSD------KLAEIEEN 284
+ GC + KIY V EE S V D KL E E+
Sbjct: 479 NAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDF 538
Query: 285 MKELGFVLN 293
+ + F N
Sbjct: 539 INNMPFEPN 547
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
+++ +L +C + + GTQ + K G VG+ L ++ S+CG++ DA AF+
Sbjct: 177 FALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEE 236
Query: 107 TPEKNSLSWTFIISARVNHGHPSEAL---------DLFKDKQWRYTSMNPTTFRSALKAY 157
P K+++ WT +I V +G +AL D+F D+ ++++ SALKA
Sbjct: 237 MPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSAC---SALKAS 293
Query: 158 AL 159
+
Sbjct: 294 SF 295
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+ ++ ++ + LN G Q A + + G + + + N +N+ S+CG++D F
Sbjct: 74 DTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLF 133
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF--RSALKAYALMGL 162
++N +SWT II+ ++ EAL F Q R T F S L+A +G
Sbjct: 134 DKMSQRNMVSWTSIITGFAHNSRFQEALSSF--CQMRIEGEIATQFALSSVLQACTSLGA 191
Query: 163 V 163
+
Sbjct: 192 I 192
>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Brachypodium distachyon]
Length = 617
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/372 (30%), Positives = 184/372 (49%), Gaps = 54/372 (14%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ +L C N L G Q + TK L G L+++ +CG +D A F
Sbjct: 247 TLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEM 306
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
++ ++W +IS +HG EA++LF+ + + N TF + L A G+
Sbjct: 307 RIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGM 366
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
+ F M+EVY IE +HYS MV+ L RAG E + I+ + P + P + TLL +SR
Sbjct: 367 QCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSM-PFQPHPSAYGTLLNASR 425
Query: 228 VHGDMKLAKYALDKLLELDP---GMYVG-------------------------------- 252
V+ +M+ A++A KL+E +P G YV
Sbjct: 426 VYKNMEFAEFAAGKLIEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAVVKTPGY 485
Query: 253 CWIEIQNKIYEFVSNEELTSEVS---DKLAEIEENMKELGFV--LNRSLY--------QT 299
W+EI I+ F SN+ L ++S ++L ++EE MK +G+V L+ +L+ Q
Sbjct: 486 SWVEINGVIHVFRSNDRLHPQLSLIHERLCQLEERMKAMGYVPDLDFALHDVDESLKVQM 545
Query: 300 KMK-----AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHH 354
M+ A+A GL+S G+ R+ K++ +CG H+A + +S I +RE++++D FHH
Sbjct: 546 LMRHSEKLAIAFGLLSTAPGITLRIFKNLRVCGDCHTAAKLISKIEDREIILRDTTRFHH 605
Query: 355 FKDGKCSCKDAY 366
F+ G CSC D +
Sbjct: 606 FRSGHCSCGDYW 617
>gi|297734415|emb|CBI15662.3| unnamed protein product [Vitis vinifera]
Length = 657
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/335 (31%), Positives = 166/335 (49%), Gaps = 20/335 (5%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
ID+++ I+ C L QA A + + G L+++ S+ G+I+DA
Sbjct: 331 IDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHV 390
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F P KN +SW +I+ NHG EA+++F+ N TF + L A + GL
Sbjct: 391 FDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLS 450
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ +F SM + I+P HY+ M+E LGR G+ +E IK P K +W LL
Sbjct: 451 DRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKD-APFKPTVNMWAALL 509
Query: 224 LSSRVHGDMKLAKYALDKLLELDP---GMYVGCWIEIQNKIYEFVSNEELTSEVS----- 275
+ RVH + +L K+A +KL + P YV + I N+ L E+S
Sbjct: 510 TACRVHKNFELGKFAAEKLYGMGPEKLSNYV-VLLNIYNRSGRLEEAAALMLEISKHGYV 568
Query: 276 --DK--LAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHS 331
DK L +++E + + LY ++ A+A GLI+ P ++++S +CG HS
Sbjct: 569 PQDKFLLPDVDEQEERV------LLYHSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHS 622
Query: 332 ACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
A + ++ + RE+VV+D FHHFKDG CSC D +
Sbjct: 623 AIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 657
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYS--ICDILNSCLNPILLNVGTQAQ 69
+ WN ++ + A DY L + + F D+ S ++ + L+ G Q
Sbjct: 198 LSWNTIIGGLVDAGDYFEAFRLF--LMMWQDFSDAGSRMFVTMIRASAGLGLIFAGRQLH 255
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ K G+ V LI++ S+CG I+DA F PEK ++ W II+ HG+
Sbjct: 256 SCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSE 315
Query: 130 EALDLFKDKQWRYTSMNPTTF 150
EAL ++ + + ++ TF
Sbjct: 316 EALSMYYEMRDSGVKIDNFTF 336
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Query: 25 KDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV 83
K Y EL E ++L + +DS + ++++C+ + + YM GL +
Sbjct: 109 KRYHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYL 168
Query: 84 GNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYT 143
N ++ ++ +CG + DA F PEKN LSW II V+ G EA LF ++
Sbjct: 169 RNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFS 228
Query: 144 SMNPTTFRSALKAYALMGLV 163
F + ++A A +GL+
Sbjct: 229 DAGSRMFVTMIRASAGLGLI 248
>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 872
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 185/408 (45%), Gaps = 56/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL-LNVGTQAQA 70
+ W+ +L +A + E ++ + + ++ ILN C + G Q
Sbjct: 464 VAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHG 523
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K L S V + L+ + ++ G I+ A+ FK EK+ +SW +IS HG +
Sbjct: 524 FAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMK 583
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
ALD+FK+ + R M+ TF A GLV E + F M I P++EH S MV
Sbjct: 584 ALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMV 643
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ RAG E+ ++ I + P IWRT+L + RVH +L + A +K++ + P
Sbjct: 644 DLYSRAGQLEKAMKVIDNM-PNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDS 702
Query: 248 -------GMYVG-------------------------CWIEIQNKIYEFVSNEE---LTS 272
MY WIE++NK Y F++ + L
Sbjct: 703 AAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKD 762
Query: 273 EVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGMPT 317
++ KL ++ +K+LG+ + S ++ A+A GLI+ P G P
Sbjct: 763 QIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPL 822
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHF-KDGKCSCKD 364
+IK++ +CG H + ++ I ERE+VV+D FHHF DG CSC D
Sbjct: 823 LIIKNLRVCGDCHVVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGD 870
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 62/144 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ + E V L R+Q +S++ L + G Q
Sbjct: 164 VTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTV 223
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL V N LIN+ +CG + A + F T K+ ++W +IS +G EA
Sbjct: 224 VVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEA 283
Query: 132 LDLFKDKQWRYTSMNPTTFRSALK 155
L +F + + ++ ++F S +K
Sbjct: 284 LGMFYSMRLNHVRLSESSFASIIK 307
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 43/105 (40%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Q K G + +VG L++ + D F E+N ++WT +IS
Sbjct: 116 GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYAR 175
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
+ E L LF Q T N TF +AL A G+ G ++
Sbjct: 176 NSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQV 220
Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 37/201 (18%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
S I+ C N L Q + K G + + L+ S+C + DA FK T
Sbjct: 301 SFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKET 360
Query: 108 PE-KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF---------------- 150
N +SWT +IS + + EA+ LF + + + N T+
Sbjct: 361 GFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVH 420
Query: 151 ---------RSA------LKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGR 195
RS+ L AY +G V EA ++F ++ + +S M+ +
Sbjct: 421 AQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVA-----WSAMLAGYAQ 475
Query: 196 AGMFEEVLEFIKGIVPGKLCP 216
AG E ++ + G + P
Sbjct: 476 AGETEAAIKIFSELTKGGVKP 496
>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
Length = 574
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/403 (29%), Positives = 188/403 (46%), Gaps = 55/403 (13%)
Query: 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRG 76
LL + +D E ++ L R+Q +D+ ++ L +C + +L+ G AY+ K
Sbjct: 174 LLFDQVDQRDTEALN-LFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHE 232
Query: 77 LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
+ P +G LI++ ++CG +++A F+ EK WT +IS HG EAL+ F
Sbjct: 233 IEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFM 292
Query: 137 DKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA 196
Q N TF L A + GLV EA LF SME ++ +PS EHY MV+ LGRA
Sbjct: 293 KMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRA 352
Query: 197 GMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG-------- 248
G+ +E E I+ + P K IW LL + +HG+++L K L+++DPG
Sbjct: 353 GLLKEAEELIENM-PVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHL 411
Query: 249 ----MYVGCW-----------------------IEIQNKIYEFVSNEE---LTSEVSDKL 278
G W I + +EF++ +E E+ L
Sbjct: 412 ASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHML 471
Query: 279 AEIEENMKELGF---------------VLNRSLYQTKMKAVALGLISFPHGMPTRVIKSV 323
+I E ++E G+ + ++ AV GLIS GM R++K++
Sbjct: 472 EQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNL 531
Query: 324 GMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+C H+ + +S + RE++++D FH FKDG C+C D +
Sbjct: 532 RVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 574
>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
Length = 734
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/414 (26%), Positives = 195/414 (47%), Gaps = 58/414 (14%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
D + W+ ++ ++ E E R+ + + + ++C N ++ G
Sbjct: 322 FTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQG 381
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Q ++ K G + + ++++ S+ G ++DA F+S KN WT ++ + +H
Sbjct: 382 RQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASH 441
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
G AL++F + N T + L A + GLV + Y F M+E Y I P+ EH
Sbjct: 442 GQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEH 501
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLC--PLIWRTLLLSSRVHGDMKLAKYALDKLL 243
Y+ MV+ GRAG+ ++ FI+ K+ ++W+TLL + R+H ++ A+ A +KL+
Sbjct: 502 YNCMVDLYGRAGLLDKAKNFIE---ENKISHEAVVWKTLLSACRLHKHIEYAQLASEKLV 558
Query: 244 EL---DPGMYV--------------------------------GCWIEIQNKIYEFV--- 265
+L D G YV WI ++N ++ FV
Sbjct: 559 QLEQYDAGSYVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVALD 618
Query: 266 SNEELTSEVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLIS 310
++ ++E+ L ++ E +KE+G+ L + ++ A+A G+IS
Sbjct: 619 TSHPRSAEIYAYLEKLMERLKEMGYTSRTDLVVHDIEEEQRETSLKFHSEKLAIAFGIIS 678
Query: 311 FPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
P G R+ K++ +C H A +F++ +RE+VV+D FHHFKDG+CSC+D
Sbjct: 679 TPVGTALRIFKNLRVCEDCHEAIKFITRATDREIVVRDLYRFHHFKDGQCSCED 732
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 48/236 (20%), Positives = 97/236 (41%), Gaps = 11/236 (4%)
Query: 5 SLISDVEIPWNLLLKACIK-AKDYEMVHELLERIQLCCGFID-SYSICDILNSCLNPILL 62
S + DV WN ++ ++ E + L + ++ F + +YS+ L L+
Sbjct: 218 SSLRDVS-SWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFALAGLLSS--R 274
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF---KSTPEKNSLSWTFII 119
++G Q + L VG L+++ +CG+++ A F E +W+ ++
Sbjct: 275 DLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMV 334
Query: 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179
+ V +G EAL+ F+ S A A G+V + ++ +E++ H
Sbjct: 335 AGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGH- 393
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLA 235
S +V+ ++G E+ + + +W T+L S HG ++A
Sbjct: 394 RFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVA--LWTTMLCSYASHGQGRMA 447
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 10/138 (7%)
Query: 13 PWNLLLKACIK----AKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGT 66
W ++ C + A E+L+ CG +++ + +L C + G
Sbjct: 91 AWTSIISGCAREGRHADGMRAFAEMLDE----CGATAPNAFVLAGVLRCCAGLGDVESGR 146
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ ++ + G+ + N ++++ ++CG A AF + +K++ SW +I A + G
Sbjct: 147 RIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACLQDG 206
Query: 127 HPSEALDLFKDKQWRYTS 144
A LF + R S
Sbjct: 207 DLVGATQLFDESSLRDVS 224
>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
Length = 890
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 186/373 (49%), Gaps = 56/373 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA--VGNCLININSRCGKIDDADL 102
++Y+I IL +C + + +G Q AY+ + A V NCLI++ S+CG +D A
Sbjct: 515 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARH 574
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F S +K+++SWT +++ HG SEALD+F + + TF L A + G+
Sbjct: 575 VFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGM 634
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V + F SM Y + P EHY+ ++ L R+G ++ +K + P + ++W L
Sbjct: 635 VDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDM-PMEPTAVVWVAL 693
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------------------------- 251
L + RVH +++LA++AL+KL+E++ G Y
Sbjct: 694 LSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIK 753
Query: 252 ---GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV--LNRSLY----- 297
GC W++ Q F + L+ ++ L + + +K +G+V N +L+
Sbjct: 754 KRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEE 813
Query: 298 --------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
++ A+A GL++ G P R+ K++ +CG HSA ++S I++ E+VV+DP
Sbjct: 814 EKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDP 873
Query: 350 GSFHHFKDGKCSC 362
FHHFK+G CSC
Sbjct: 874 SRFHHFKNGSCSC 886
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 7/173 (4%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCG------FIDSYSICDILNSCLNPI 60
I DV I WN ++ A +K+ + +L ++ L D SI +IL +C +
Sbjct: 221 IDDV-ISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 279
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
+ + + G VGN LI+ ++CG +++A F K+ +SW +++
Sbjct: 280 AVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 339
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSM 173
G+ A +LFK+ + ++ T+ + + Y+ G EA LF M
Sbjct: 340 GYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 392
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLIS----------HPAVGNCLININSRCGKI 97
+I +L++C + + GT+ AY K L++ V N LI++ S+C
Sbjct: 403 TIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSF 462
Query: 98 DDADLAFKSTP--EKNSLSWTFIISARVNHGHPSEALDLF 135
A F P E+N ++WT +I +G ++AL LF
Sbjct: 463 KAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLF 502
>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
Length = 852
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 186/373 (49%), Gaps = 56/373 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA--VGNCLININSRCGKIDDADL 102
++Y+I IL +C + + +G Q AY+ + A V NCLIN+ S+CG +D A
Sbjct: 477 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARH 536
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F S +K+++SWT +++ HG SEALD+F + + TF L A + G+
Sbjct: 537 VFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGM 596
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V + F SM Y + P EHY+ ++ L R G ++ + +K + P + ++W L
Sbjct: 597 VDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDM-PMEPTAVVWVAL 655
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------------------------- 251
L + RVH +++LA++AL+KL+E++ G Y
Sbjct: 656 LSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIK 715
Query: 252 ---GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV--LNRSLY----- 297
GC W++ Q F + L+ ++ L + + +K +G+V N +L+
Sbjct: 716 KRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEE 775
Query: 298 --------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
++ A+A GL++ G P R+ K++ +CG HSA ++S I++ E+VV+DP
Sbjct: 776 EKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDP 835
Query: 350 GSFHHFKDGKCSC 362
FHHFK+G CSC
Sbjct: 836 SRFHHFKNGSCSC 848
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 7/173 (4%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCG------FIDSYSICDILNSCLNPI 60
I DV I WN ++ A +K+ + +L ++ L D SI +IL +C +
Sbjct: 183 IDDV-ISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 241
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
+ + + G VGN LI+ ++CG +++A F K+ +SW +++
Sbjct: 242 AVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 301
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSM 173
G+ A +LFK+ + ++ T+ + + Y+ G EA +F M
Sbjct: 302 GYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 354
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLIS----------HPAVGNCLININSRCGKI 97
+I +L++C + + G + AY K L++ V N LI++ S+C
Sbjct: 365 TIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSF 424
Query: 98 DDADLAFKSTP--EKNSLSWTFIISARVNHGHPSEALDLF 135
A F P E+N ++WT +I +G ++AL LF
Sbjct: 425 KAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLF 464
>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Glycine max]
Length = 722
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 183/379 (48%), Gaps = 58/379 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGL-ISHPAVGNCLININSRCGKIDDADLA 103
D S + ++C N ++G Q A K + + +V N L+ + S+CG + DA
Sbjct: 345 DDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRV 404
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F + PE N++S +I+ HG E+L LF+ + + N TF + L A G V
Sbjct: 405 FDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKV 464
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E + F M+E + IEP EHYS M++ LGRAG +E I+ +P + W TLL
Sbjct: 465 EEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIE-TMPFNPGSIEWATLL 523
Query: 224 LSSRVHGDMKLAKYALDKLLELDP----------GMYV---------------------- 251
+ R HG+++LA A ++ L L+P MY
Sbjct: 524 GACRKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKK 583
Query: 252 --GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLN------------ 293
GC WIEI K++ FV+ + + E+ + ++ + MK+ G+V +
Sbjct: 584 KPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVE 643
Query: 294 ------RSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
R LY ++ AVA GLIS G+P V+K++ +CG H+A + +S + RE+ V+
Sbjct: 644 PDERERRLLYHSEKLAVAFGLISTEEGVPILVVKNLRICGDCHNAVKLISALTGREITVR 703
Query: 348 DPGSFHHFKDGKCSCKDAY 366
D FH FK+G CSC+D +
Sbjct: 704 DTHRFHCFKEGHCSCRDYW 722
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 6/157 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N L+ A + L E ++ +D +++ ++ +C + + L Q +
Sbjct: 107 VSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLSGVITACGDDVGLV--RQLHCF 164
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE---KNSLSWTFIISARVNHGHP 128
+ G + +V N ++ SR G + +A F+ E ++ +SW +I A H
Sbjct: 165 VVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREG 224
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYA-LMGLVG 164
EA+ LF++ R ++ T S L A+ + LVG
Sbjct: 225 MEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVG 261
>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
Length = 745
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 178/373 (47%), Gaps = 54/373 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y++ +++SC N L G Q GL+ + V N L+ + +CG I+DA F
Sbjct: 372 DDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLF 431
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ +SWT ++S G E +DLF+ + + TF L A + G V
Sbjct: 432 DEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVE 491
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ F SM++ + I P ++HY+ M++ R+G +E EFIK + P + W TLL
Sbjct: 492 KGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQM-PMHPDAIGWGTLLS 550
Query: 225 SSRVHGDMKLAKYALDKLLELD---PGMYV------------------------------ 251
+ R+ GDM++ K+A + LLE+D P YV
Sbjct: 551 ACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKE 610
Query: 252 -GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS----------- 295
GC WI+ +NK++ F ++++ + + +KL + M E G+ + S
Sbjct: 611 PGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDK 670
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ ++ A+A GLI P MP R++K++ +C H+A +F+S I R+++V+D
Sbjct: 671 VHMVSHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVR 730
Query: 352 FHHFKDGKCSCKD 364
FH F DG CSC D
Sbjct: 731 FHKFSDGVCSCGD 743
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Query: 2 KLCSLISDVE-IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
+L +++D + I W ++ + E+ R++ ID Y+ IL +C
Sbjct: 227 RLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALS 286
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L G Q AY+ + + VG+ L+++ S+C I A+ F+ KN +SWT +I
Sbjct: 287 ALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIV 346
Query: 121 ARVNHGHPSEALDLFKDKQ 139
+G EA+ +F + Q
Sbjct: 347 GYGQNGCSEEAVRVFSEMQ 365
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 43/72 (59%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I RC +++A F+ +++S++WT +++ +G SEAL++F+ +++ +
Sbjct: 210 NTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIA 269
Query: 145 MNPTTFRSALKA 156
++ TF S L A
Sbjct: 270 IDQYTFGSILTA 281
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 176/375 (46%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y++ +L++C L++G A + M + +S+P +G LI++ S+CG + A F
Sbjct: 315 DCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIF 374
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ +K+ + W ++ +GH LF + + TF L G V
Sbjct: 375 TAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVN 434
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F +M+ V+ + PS EHY MV+ LGRAG+ E + I + P K ++W LL
Sbjct: 435 EGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNM-PMKPNAVVWGALLG 493
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
++H D LA+ L KL+EL+P G YV
Sbjct: 494 GCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKI 553
Query: 252 -GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL---------- 296
C WIEI ++EF+ ++ L+ ++ KL E+ +K +G V
Sbjct: 554 RACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEK 613
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ AVA GLI+ P RV+K++ +CG H A + +S I +RE++++D
Sbjct: 614 EHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNR 673
Query: 352 FHHFKDGKCSCKDAY 366
FH F DG CSC+D +
Sbjct: 674 FHTFIDGSCSCRDYW 688
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS+S+ +L +C G Y++ G+ + V L+++ +CG ++ A+L F
Sbjct: 214 DSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIF 273
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+ PEK+ +SW+ +I +G P +ALDLF Q + T L A A +G
Sbjct: 274 SAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLG 330
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 60/123 (48%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN +++ + ++ L ++ ++++I +L +C + + +G + + +
Sbjct: 82 WNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLV 141
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G V L+++ +C DDA F P+KN +SWT II+ ++ GH EA+
Sbjct: 142 KAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIG 201
Query: 134 LFK 136
FK
Sbjct: 202 AFK 204
>gi|414878625|tpg|DAA55756.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
Length = 465
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 186/391 (47%), Gaps = 41/391 (10%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ C++ + +E L + C D +++ ++N+C + + G Q Q
Sbjct: 72 VIWTSVISGCVQNELFEEALRLFQESVRCGLRPDVFAMSSVMNACASLAVARTGEQIQCL 131
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G A+GN I++ +R G +D A F+ ++ +SW+ +IS+ +HG +A
Sbjct: 132 AVKSGFNRFTAMGNSFIHMCARSGDVDAATRRFQEMESRDVVSWSAVISSHAHHGCARDA 191
Query: 132 LDLFKDK-QWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
L +F + + N TF S L A + GLV E R + M + Y + P+ +H + +V
Sbjct: 192 LCVFNEMLDAKVAPPNEITFLSILTACSHGGLVDEGLRYYGIMNDEYGLSPTIKHCTCVV 251
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG + FI+ ++WR+LL S R+HGDM+ + DK+++L+P
Sbjct: 252 DLLGRAGRLADAEAFIRDSAFHDD-AVVWRSLLASCRIHGDMERGQLVADKIMDLEPTSS 310
Query: 248 -------GMYVGC-------------------------WIEIQNKIYEFVSNEELTSEVS 275
MY+ WIE+ + ++ FV+ ++ E
Sbjct: 311 ASYVILYNMYLDAGELSSASKTRDLMKERGVKKEPGLSWIELSSGVHSFVAGDKSHPESK 370
Query: 276 DKLAEIEENMKELGFVLNR----SLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHS 331
++ E + ++ + +R + ++ AVA G+I P P RV+K++ +C HS
Sbjct: 371 AIYRKVAEMVSKVAGISSREQDLAGCHSEKLAVAFGMIHLPQSAPIRVMKNLRVCRDCHS 430
Query: 332 ACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
+S RE++++D FH F+DG CSC
Sbjct: 431 TMELISKSERREIILRDAIRFHRFRDGSCSC 461
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
+S IL +C G Q + K +G+ LI++ S G ++D F+S
Sbjct: 6 FSFSSILRACNLAGEFGFGKQIHGQVLKHSFQGDVYIGSALIDLYSGSGCMEDGYRCFRS 65
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
P+++ + WT +IS V + EAL LF++
Sbjct: 66 LPKQDVVIWTSVISGCVQNELFEEALRLFQE 96
>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
Length = 745
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 186/373 (49%), Gaps = 56/373 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA--VGNCLININSRCGKIDDADL 102
++Y+I IL +C + + +G Q AY+ + A V NCLIN+ S+CG +D A
Sbjct: 370 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARH 429
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F S +K+++SWT +++ HG SEALD+F + + TF L A + G+
Sbjct: 430 VFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGM 489
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V + F SM Y + P EHY+ ++ L R G ++ + +K + P + ++W L
Sbjct: 490 VDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDM-PMEPTAVVWVAL 548
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------------------------- 251
L + RVH +++LA++AL+KL+E++ G Y
Sbjct: 549 LSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIK 608
Query: 252 ---GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV--LNRSLY----- 297
GC W++ Q F + L+ ++ L + + +K +G+V N +L+
Sbjct: 609 KRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEE 668
Query: 298 --------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
++ A+A GL++ G P R+ K++ +CG HSA ++S I++ E+VV+DP
Sbjct: 669 EKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDP 728
Query: 350 GSFHHFKDGKCSC 362
FHHFK+G CSC
Sbjct: 729 SRFHHFKNGSCSC 741
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 7/173 (4%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCG------FIDSYSICDILNSCLNPI 60
I DV I WN ++ A +K+ + +L ++ L D SI +IL +C +
Sbjct: 76 IDDV-ISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 134
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
+ + + G VGN LI+ ++CG +++A F K+ +SW +++
Sbjct: 135 AVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 194
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSM 173
G+ A +LFK+ + ++ T+ + + Y+ G EA +F M
Sbjct: 195 GYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 247
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLIS----------HPAVGNCLININSRCGKI 97
+I +L++C + + G + AY K L++ V N LI++ S+C
Sbjct: 258 TIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSF 317
Query: 98 DDADLAFKSTP--EKNSLSWTFIISARVNHGHPSEALDLF 135
A F P E+N ++WT +I +G ++AL LF
Sbjct: 318 KAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLF 357
>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930 [Vitis vinifera]
gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
Length = 743
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 180/375 (48%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ +++SC N L G Q GLIS V N LI + +CG +++ F
Sbjct: 370 DDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLF 429
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++ +SWT +++ G +E + LF+ + TF L A + GLV
Sbjct: 430 TEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVE 489
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ + F SM + + I P +H + +++ LGRAG EE FI + P + W TLL
Sbjct: 490 KGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNM-PCHPDVVGWATLLS 548
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMYVG---------------------- 252
S RVHGDM++ K+A D L+ L+P +Y
Sbjct: 549 SCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKE 608
Query: 253 ---CWIEIQNKIYEFVSNEELTSEVSDKLAEIEE---NMKELGFVLNRSL---------- 296
WI+ + K++ F ++++ + + AE+E+ M E G+V + S
Sbjct: 609 PGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEESEK 668
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ ++ A+A GLI P G+P RVIK++ +CG H+A +F+S I +RE++V+D
Sbjct: 669 IKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQREILVRDAVR 728
Query: 352 FHHFKDGKCSCKDAY 366
FH FKDG CSC D +
Sbjct: 729 FHLFKDGTCSCGDFW 743
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 72/156 (46%)
Query: 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILL 62
C L I W +++ ++ ++ ++L +D ++ +L +C + + L
Sbjct: 227 FCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLAL 286
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
G Q AY+ + + VG+ L+++ S+C I A+ FK P+KN +SWT ++
Sbjct: 287 GEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGY 346
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+G EA+ +F + Q + T S + + A
Sbjct: 347 GQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCA 382
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I RCG I+++ F E++S+SWT +I+ + +G EALD+F++ + +
Sbjct: 208 NTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFA 267
Query: 145 MNPTTFRSALKAYALMGLVGEAYRL 169
M+ TF S L A + +GE ++
Sbjct: 268 MDQFTFGSVLTACGSLLALGEGKQI 292
>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
Length = 805
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 115/373 (30%), Positives = 179/373 (47%), Gaps = 55/373 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS ++ IL +C + L G + Y+ + G S V N L+++ +CG + A L F
Sbjct: 431 DSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF 490
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P K+ +SWT +IS HG+ +EA+ F + + + +F S L A + GL+
Sbjct: 491 DMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLE 550
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ +R F M+ ++IEP EHY+ MV+ L R G + EFI+ +P IW LL
Sbjct: 551 QGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIE-TLPIAPDATIWGALLC 609
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
R++ D++LA+ +++ EL+P G YV
Sbjct: 610 GCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKN 669
Query: 252 -GC-WIEIQNKIYEFVSNEELTSEVSDK----LAEIEENMKELGF-------VLNRSLYQ 298
GC WIEI+ K+ FVS + S K L ++ MKE G+ ++N Q
Sbjct: 670 PGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQ 729
Query: 299 TKMK--------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
+M A+A GL++ P RV K++ +CG H +FMS RE+V++D
Sbjct: 730 KEMALCGHSEKLAMAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSN 789
Query: 351 SFHHFKDGKCSCK 363
FHHFK+G CSC+
Sbjct: 790 RFHHFKNGYCSCR 802
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 3/160 (1%)
Query: 2 KLCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL 61
KLC DV I WN ++ + E E+ +++ +D +I +L C N
Sbjct: 210 KLCD--RDV-ISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGT 266
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L++G + K N L+++ S+CG +D A F+ E+N +SWT +I+
Sbjct: 267 LSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 326
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
G A+ L + + ++ S L A A G
Sbjct: 327 YTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSG 366
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 51/108 (47%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + + LL++++ +D + IL++C L+ G Y
Sbjct: 318 VSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDY 377
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
+ + S+ V N L+++ ++CG +D A+ F + K+ +SW +I
Sbjct: 378 IKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMI 425
>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 186/373 (49%), Gaps = 56/373 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA--VGNCLININSRCGKIDDADL 102
++Y+I IL +C + + +G Q AY+ + A V NCLI++ S+CG +D A
Sbjct: 522 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARH 581
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F S +K+++SWT +++ HG SEALD+F + + TF L A + G+
Sbjct: 582 VFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGM 641
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V + F SM Y + P EHY+ ++ L R+G ++ +K + P + ++W L
Sbjct: 642 VDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDM-PMEPTAVVWVAL 700
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------------------------- 251
L + RVH +++LA++AL+KL+E++ G Y
Sbjct: 701 LSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIK 760
Query: 252 ---GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV--LNRSLY----- 297
GC W++ Q F + L+ ++ L + + +K +G+V N +L+
Sbjct: 761 KRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEE 820
Query: 298 --------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
++ A+A GL++ G P R+ K++ +CG HSA ++S I++ E+VV+DP
Sbjct: 821 EKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDP 880
Query: 350 GSFHHFKDGKCSC 362
FHHFK+G CSC
Sbjct: 881 SRFHHFKNGSCSC 893
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 7/173 (4%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCG------FIDSYSICDILNSCLNPI 60
I DV I WN ++ A +K+ + +L ++ L D SI +IL +C +
Sbjct: 228 IDDV-ISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 286
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
+ + + G VGN LI+ ++CG +++A F K+ +SW +++
Sbjct: 287 AVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 346
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSM 173
G+ A +LFK+ + ++ T+ + + Y+ G EA LF M
Sbjct: 347 GYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 399
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLIS----------HPAVGNCLININSRCGKI 97
+I +L++C + + GT+ AY K L++ V N LI++ S+C
Sbjct: 410 TIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSF 469
Query: 98 DDADLAFKSTP--EKNSLSWTFIISARVNHGHPSEALDLF 135
A F P E+N ++WT +I +G ++AL LF
Sbjct: 470 KAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLF 509
>gi|409032180|gb|AFV08644.1| EMP5 [Zea mays]
gi|409032182|gb|AFV08645.1| EMP5 [Zea mays]
gi|414878626|tpg|DAA55757.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
Length = 776
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 186/391 (47%), Gaps = 41/391 (10%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ C++ + +E L + C D +++ ++N+C + + G Q Q
Sbjct: 383 VIWTSVISGCVQNELFEEALRLFQESVRCGLRPDVFAMSSVMNACASLAVARTGEQIQCL 442
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G A+GN I++ +R G +D A F+ ++ +SW+ +IS+ +HG +A
Sbjct: 443 AVKSGFNRFTAMGNSFIHMCARSGDVDAATRRFQEMESRDVVSWSAVISSHAHHGCARDA 502
Query: 132 LDLFKDK-QWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
L +F + + N TF S L A + GLV E R + M + Y + P+ +H + +V
Sbjct: 503 LCVFNEMLDAKVAPPNEITFLSILTACSHGGLVDEGLRYYGIMNDEYGLSPTIKHCTCVV 562
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG + FI+ ++WR+LL S R+HGDM+ + DK+++L+P
Sbjct: 563 DLLGRAGRLADAEAFIRDSAFHDD-AVVWRSLLASCRIHGDMERGQLVADKIMDLEPTSS 621
Query: 248 -------GMYVGC-------------------------WIEIQNKIYEFVSNEELTSEVS 275
MY+ WIE+ + ++ FV+ ++ E
Sbjct: 622 ASYVILYNMYLDAGELSSASKTRDLMKERGVKKEPGLSWIELSSGVHSFVAGDKSHPESK 681
Query: 276 DKLAEIEENMKELGFVLNR----SLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHS 331
++ E + ++ + +R + ++ AVA G+I P P RV+K++ +C HS
Sbjct: 682 AIYRKVAEMVSKVAGISSREQDLAGCHSEKLAVAFGMIHLPQSAPIRVMKNLRVCRDCHS 741
Query: 332 ACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
+S RE++++D FH F+DG CSC
Sbjct: 742 TMELISKSERREIILRDAIRFHRFRDGSCSC 772
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
+S IL +C G Q + K +G+ LI++ S G ++D F+S
Sbjct: 317 FSFSSILRACNLAGEFGFGKQIHGQVLKHSFQGDVYIGSALIDLYSGSGCMEDGYRCFRS 376
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
P+++ + WT +IS V + EAL LF++
Sbjct: 377 LPKQDVVIWTSVISGCVQNELFEEALRLFQE 407
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 58/124 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +NL++ A +A + R + +D ++ L +C + + G A
Sbjct: 68 VSYNLVIVAYSRAGLPALSLATFARARAWARVVDRFTYAAALAACSRALDVRTGKAVHAM 127
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ GL + + N + ++ +RCG++ +A F + E++ +SW ++S V G E
Sbjct: 128 VVLGGLGNGLFLSNSVASMYARCGEMGEARRVFDAAEERDDVSWNALLSGYVRAGAREET 187
Query: 132 LDLF 135
L++F
Sbjct: 188 LEVF 191
>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
Length = 587
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 190/374 (50%), Gaps = 55/374 (14%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
+ + L +C + L++G A + + ++ V + L+++ +CG ++DA+ F
Sbjct: 215 FMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYE 274
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDK-QWRYTSMNPTTFRSALKAYALMGLVGE 165
TP++N ++W +I + G AL +F D + T+ N T + + + + GL +
Sbjct: 275 TPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKD 334
Query: 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS 225
Y LF +M E + IEP EHY+ +V+ LGRAGM E+ E I+G+ P + +W LL +
Sbjct: 335 GYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGM-PMRPSISVWGALLGA 393
Query: 226 SRVHGDMKLAKYALDKLLELDP---GMYV------------------------------- 251
++HG +L + A +KL ELDP G +V
Sbjct: 394 CKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDP 453
Query: 252 GC-WIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNR--SLY-------- 297
GC W+ +N ++ F + + E+ +E+ L+++ + M+ G++ + SLY
Sbjct: 454 GCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLEEEEKE 513
Query: 298 -----QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
++ A+A GLI P G+P R++K++ +C H A +F+S I+ RE++V+D F
Sbjct: 514 SEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISGIVGREIIVRDNNRF 573
Query: 353 HHFKDGKCSCKDAY 366
HHFK +CSC D +
Sbjct: 574 HHFKQYQCSCGDYW 587
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 4/154 (2%)
Query: 12 IPWN-LLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ A + + E + E ++ G + S C N+C + L++G Q
Sbjct: 79 VAWNAVMTNAVLDGRPLETI-EAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHG 137
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
++ K G +V N +++ +C A F +NS+SW +++A +G E
Sbjct: 138 FVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEE 197
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
A + R + PT F + GL+G
Sbjct: 198 AFAAYLGA--RRSGEEPTDFMVSSALTTCAGLLG 229
>gi|297795827|ref|XP_002865798.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311633|gb|EFH42057.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 701
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 175/376 (46%), Gaps = 58/376 (15%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D +++ ++ L + QA A + + G S L++ S+ G++D A
Sbjct: 323 MDQFTLSIMIRISTRLAKLELTKQAHASLIRSGFESEIVANTALVDFYSKWGRVDTARYV 382
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F P KN +SW ++ NHG ++A+ LF+ + N TF + L A A GL
Sbjct: 383 FDKLPRKNIISWNALMGGYANHGRGTDAVRLFERMIAAKVAPNHVTFLAVLSACAYSGLS 442
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ + +FLSM EV+ I+P HY+ M+E LGR G+ +E + FI+ P K +W LL
Sbjct: 443 EQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAIAFIRR-APLKTTVNMWAALL 501
Query: 224 LSSRVHGDMKLAKYALDKLLELDP---GMYV----------------------------- 251
+ R+ G+++L + +KL + P G YV
Sbjct: 502 NACRMQGNLELGRVVAEKLYGMGPEKLGNYVVLYNMYNSMGKTAEAAGVLETLESKGLSM 561
Query: 252 --GC-WIEIQNKIYEFVS-------NEELTSEVSDKLAEIEENMKELGFVLNR------- 294
C W+E+ ++ + F+S NE + EV K+ E+ E + E G++
Sbjct: 562 IPACTWVEVGDQTHSFLSGDRFDSYNETVKREVYQKVDELMEEIYEYGYLAEEKNLLPDV 621
Query: 295 --------SLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVV 346
Y ++ A+A GL++ P P ++ ++ +C H F+S + RE+VV
Sbjct: 622 DEKEEERVGRYHSEKLAIAYGLMNTPEWNPLQITQNHRICKDCHKVVEFISLVTGREMVV 681
Query: 347 KDPGSFHHFKDGKCSC 362
+D FHHFK+GKCSC
Sbjct: 682 RDASRFHHFKEGKCSC 697
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 68/137 (49%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
+N ++ + +YE EL + + ++++ +L + + VG Q
Sbjct: 192 YNSIISGFVNFGNYEEAFELFKLMWEELSDCETHTFAVMLRASAGLWSVYVGKQLHVCAL 251
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G++ + V LI++ S+CG I+DA AF+S PEK +++W I++ HG+ EAL
Sbjct: 252 KLGVVDNTFVSCGLIDMYSKCGDIEDARCAFESMPEKTTVAWNNIVAGYALHGYSEEALC 311
Query: 134 LFKDKQWRYTSMNPTTF 150
L + + SM+ T
Sbjct: 312 LLYEMRDSGVSMDQFTL 328
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 1/128 (0%)
Query: 32 ELLERIQLCCGFIDSYSICDIL-NSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI 90
EL E +++ C F S D L +C+ + + ++ G + N ++ +
Sbjct: 108 ELFEILEIRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFIISNGFEPEKYMMNRILLM 167
Query: 91 NSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
+ +CG I DA F PE+N S+ IIS VN G+ EA +LFK + TF
Sbjct: 168 HVKCGMIIDARRLFDEMPERNLFSYNSIISGFVNFGNYEEAFELFKLMWEELSDCETHTF 227
Query: 151 RSALKAYA 158
L+A A
Sbjct: 228 AVMLRASA 235
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 175/375 (46%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y++ +L++C L++G A + M + +S+P +G LI++ S+CG + A F
Sbjct: 315 DCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIF 374
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ K+ + W ++ +GH LF + + TF L G V
Sbjct: 375 TAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVN 434
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F +M+ V+ + PS EHY MV+ LGRAG+ E + I + P K ++W LL
Sbjct: 435 EGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNM-PMKPNAVVWGALLG 493
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
++H D LA+ L KL+EL+P G YV
Sbjct: 494 GCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKI 553
Query: 252 -GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL---------- 296
C WIEI ++EF+ ++ L+ ++ KL E+ +K +G V
Sbjct: 554 RACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEK 613
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ AVA GLI+ P RV+K++ +CG H A + +S I +RE++++D
Sbjct: 614 EHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNR 673
Query: 352 FHHFKDGKCSCKDAY 366
FH F DG CSC+D +
Sbjct: 674 FHTFIDGSCSCRDYW 688
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS+S+ +L +C G Y++ G+ + V L+++ +CG ++ A+L F
Sbjct: 214 DSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIF 273
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+ PEK+ +SW+ +I +G P +ALDLF Q + T L A A +G
Sbjct: 274 SAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLG 330
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 60/123 (48%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN +++ + ++ L ++ ++++I +L +C + + +G + + +
Sbjct: 82 WNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLV 141
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G V L+++ +C DDA F P+KN +SWT II+ ++ GH EA+
Sbjct: 142 KAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIG 201
Query: 134 LFK 136
FK
Sbjct: 202 AFK 204
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 124/413 (30%), Positives = 197/413 (47%), Gaps = 62/413 (15%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCC--GFIDSYSICDILNSCLNPILLNVGTQA 68
+ W+ ++ K K YE + EL + L +S ++ +L +C L G
Sbjct: 241 VSWSAMIACYAKNGKPYEAL-ELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLI 299
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
AY+ +RGL S V + LI + +RCGK++ L F +K+ + W +IS+ HG+
Sbjct: 300 HAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYG 359
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
+A+ +F++ S + +F S L A + GLV E +LF SM + + I+PS EHY+
Sbjct: 360 RKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYAC 419
Query: 189 MVEALGRAGMFEEVLEFIKG--IVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
MV+ LGRA +E + I+ I PG P +W +LL + R+H ++LA+ A +L +L+
Sbjct: 420 MVDLLGRANRLDEAAKIIEDLRIEPG---PKVWGSLLGACRIHCHVELAERASKRLFKLE 476
Query: 247 P---GMYV--------------------------------GCWIEIQNKIYEFVSNEELT 271
P G YV WIE++ KIY F S +E
Sbjct: 477 PTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFN 536
Query: 272 ---SEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFPH 313
++ L + MK+ G+ L ++ AVA GLI+
Sbjct: 537 PQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQEEKERIVLGHSEKLAVAFGLINTSK 596
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G R+ K++ +C HS +F+S +RE++V+D FHHFKDG CSC D +
Sbjct: 597 GDTIRITKNLRLCEDCHSVTKFISKFADREIMVRDLNRFHHFKDGVCSCGDYW 649
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP----ILLNVGTQAQ 69
WN L +A A V EL R+ + D ++ +L +C+ L G +
Sbjct: 138 WNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIH 197
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
A++ + G +H V L+++ +R G + A F P KN +SW+ +I+ +G P
Sbjct: 198 AHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPY 257
Query: 130 EALDLFKD 137
EAL+LF++
Sbjct: 258 EALELFRE 265
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 107/371 (28%), Positives = 184/371 (49%), Gaps = 55/371 (14%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ ++ SC L++G Y+ K+G + V LI++ ++CG + DA F+
Sbjct: 233 TMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGM 292
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
+++ +W+ +I A HG +A+ +F++ + + TF L A + GLV +
Sbjct: 293 RVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGR 352
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
F SM + Y I P +HY MV+ LGRAG +E F+ + K P++WRTLL +
Sbjct: 353 GYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKL-EIKATPILWRTLLSACS 411
Query: 228 VHGDMKLAKYALDKLLELDP---GMY---------VGCW--------------------- 254
HG++++AK ++++ ELD G Y VG W
Sbjct: 412 THGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGC 471
Query: 255 --IEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL------------- 296
+E+ N ++EF S + ++ E+ L E+ + +K +G+V + SL
Sbjct: 472 SSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGYVPDTSLVYHADMEEEGKEL 531
Query: 297 ---YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
Y ++ A+A GL++ P G RV K++ +CG H+A + +S I R++V++D FH
Sbjct: 532 VLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFH 591
Query: 354 HFKDGKCSCKD 364
F+DGKCSC D
Sbjct: 592 RFEDGKCSCGD 602
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 11/224 (4%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQA 70
I +N++ + ++ + L + LC G + D Y+ +L +C + L G
Sbjct: 96 ILFNIMARGYARSNSPYLAFSLFGEL-LCSGLLPDDYTFSSLLKACASSKALREGMGLHC 154
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K GL + + LIN+ + C ++ A F + +S+ II+ P+E
Sbjct: 155 FAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNE 214
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI-- 188
AL LF++ Q T S + + AL+G A L + E + +++ +
Sbjct: 215 ALSLFRELQASNIEPTDVTMLSVIMSCALLG----ALDLGKWIHEYVKKKGFDKYVKVNT 270
Query: 189 -MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231
+++ + G + + +G+ W ++++ HGD
Sbjct: 271 ALIDMFAKCGSLTDAISIFEGMRVRD--TQAWSAMIVAFATHGD 312
>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 613
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 180/375 (48%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
++ ++ +L C N L G Q + K L + VG L+++ +CG + A F
Sbjct: 240 NASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLF 299
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++ ++W +IS HG EA++LF+ + N TF + L A GL
Sbjct: 300 GEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCD 359
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
R F M+E+Y IEP +HYS MV+ L RAG E ++ I+ + P + P + TLL
Sbjct: 360 FGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSM-PFEPHPSAYGTLLA 418
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMYVGC--------------------- 253
+ RV+ +++ A+ A KL+E DP +Y G
Sbjct: 419 ACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKT 478
Query: 254 ----WIEIQNKIYEFVSNEELTSE---VSDKLAEIEENMKELGFV--------------- 291
WIEI+ ++EF SN+ L + + +KL ++ E MK +G+V
Sbjct: 479 PGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLK 538
Query: 292 LNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ + ++ A++ GLIS GM R+ K++ +CG H+A + +S I +RE++++D
Sbjct: 539 VQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTR 598
Query: 352 FHHFKDGKCSCKDAY 366
FHHF+ G CSC D +
Sbjct: 599 FHHFRGGHCSCGDYW 613
>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 1083
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 113/355 (31%), Positives = 171/355 (48%), Gaps = 56/355 (15%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G + A + K L V CLI++ +CG+++DA F P S+ W II++
Sbjct: 442 LQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIAS 501
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
HG EAL LFKD + TF S L A + GLV E + F M++ Y I+P
Sbjct: 502 LGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKP 561
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
S +HY MV+ LGRAG E+ E ++ + P + IW LL + +++G+ +L A D+
Sbjct: 562 SLKHYGCMVDLLGRAGYLEKAYELVRNM-PIQPDASIWGALLSACKIYGNAELGTLASDR 620
Query: 242 LLELDPGMYVGCWIEIQN------------KIYEFVSNEELT------------------ 271
LLE+D VG ++ + N K+ + L
Sbjct: 621 LLEVD-SENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFY 679
Query: 272 ---------SEVSDKLAEIEENMKELGFVLNRS-LYQ--------------TKMKAVALG 307
+E+ +L + MK LG+V + S +YQ ++ A+A G
Sbjct: 680 TGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFG 739
Query: 308 LISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
+IS P P R+ K++ +CG H+A +++S I ERE+VV+D FHHFKDG CSC
Sbjct: 740 IISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGICSC 794
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ + + +L R++ +D+ ++ IL C + G ++
Sbjct: 190 WNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVL 249
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K GL S V N LIN+ S+ G++ DA + F ++ +SW II+A + PS AL
Sbjct: 250 KHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALR 309
Query: 134 LFKDKQ 139
FK Q
Sbjct: 310 FFKGMQ 315
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 74/150 (49%), Gaps = 6/150 (4%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK-DKQWR 141
+GN L+N+ ++ G ++ A F P K+++SW +++ +G SEA+D + ++ R
Sbjct: 361 IGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECR 420
Query: 142 YTSMNPTTFRSALKAYALMGLVGEAYRLFLSM-EEVYHIEPSEEHYSIMVEALGRAGMFE 200
T N T+ S + AY+ +G + + ++ + + +++ + +++ G+ G E
Sbjct: 421 DTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVA--TCLIDLYGKCGRLE 478
Query: 201 EVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
+ + I P W ++ S +HG
Sbjct: 479 DAMSLFYEIPRDTSVP--WNAIIASLGIHG 506
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 110/409 (26%), Positives = 191/409 (46%), Gaps = 56/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + L ++Q+ D ++ +L++C + L +G ++Y
Sbjct: 177 VTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESY 236
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K ++ + N L+++ ++CG +D A F++ ++ +SWT +I HG EA
Sbjct: 237 IEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEA 296
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF++ + F L A + GLV + F M + I P EHY MV+
Sbjct: 297 VSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVD 356
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
L RAG+ E LEF++ + P + P+IWRTL+ + RVHG++KL + +L+ +P
Sbjct: 357 LLSRAGLVTEALEFVERM-PIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHES 415
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEE---LTSE 273
YV IE+ N+I+EF+ + +E
Sbjct: 416 NYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNE 475
Query: 274 VSDKLAEIEENMKELGFVLNR----------------SLYQTKMKAVALGLISFPHGMPT 317
+ + E+ MK G+ S + K+ A+A L++ P G P
Sbjct: 476 IIKMVNEMGREMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKL-AIAFALLNTPPGSPI 534
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+ K++ +CG HSA +F+S I RE+V++D FHHF+DG+CSC D +
Sbjct: 535 RITKNLRVCGDCHSASKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 79/187 (42%), Gaps = 4/187 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC-GKIDDADLA 103
+ Y+ +L +C LN+G + K G V N ++++ C G ++ A
Sbjct: 108 NKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKL 167
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F P+ + ++WT +I G + A+ LF+ Q + T S L A +G +
Sbjct: 168 FDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGAL 227
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E + S E + + E + +V+ + G ++ L + + K + W +++
Sbjct: 228 -ELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNM--SKRTIVSWTSVI 284
Query: 224 LSSRVHG 230
+ +HG
Sbjct: 285 VGLAMHG 291
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 190/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W+ ++ A KA+ L +QL D ++ +L++C + L +G
Sbjct: 234 ISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHEC 293
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + +G L+++ ++CG ID++ F ++ +W+ +I NHG A
Sbjct: 294 IERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELA 353
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LD F N TF L A + +GLV E + F SM +VY + P EHY +V+
Sbjct: 354 LDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVD 413
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG +E +E IK + P ++WR LL + R++ ++++A+ A LLEL+P G
Sbjct: 414 ILGRAGRLQEAMELIKSM-PFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDG 472
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEELTSE--- 273
YV IE+ N ++EFV+ ++ E
Sbjct: 473 NYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKK 532
Query: 274 VSDKLAEIEENMKELGFV-LNRSLYQ--------------TKMKAVALGLISFPHGMPTR 318
+ L+EI +K G+ L S+ Q ++ A+A GL+S G R
Sbjct: 533 ILRMLSEITARLKANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIR 592
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +C H A + +S +R ++V+D FHHF +G CSCKD +
Sbjct: 593 IVKNLRVCDDCHIAIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 91/235 (38%), Gaps = 42/235 (17%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+P+N+LL ++ + + H+L +R
Sbjct: 172 VPYNVLLAEYVRVGEINLAHDLFDR----------------------------------- 196
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M +R L+S N +I+ ++ G + A F T E++ +SW+ +I+A +EA
Sbjct: 197 MPERDLVS----WNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEA 252
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF + Q + T S L A +G +G + +E IE + + +V+
Sbjct: 253 LRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIER-NRIEIDLKLGTSLVD 311
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+ G + L G+ + W +++ HG +LA K++ D
Sbjct: 312 MYAKCGDIDNSLRVFNGMNNRDV--FAWSAMIMGLANHGFGELALDHFSKMISED 364
>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
Length = 694
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 107/372 (28%), Positives = 189/372 (50%), Gaps = 55/372 (14%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
+ + L +C + L++G A + + ++ V + L+++ +CG ++DA+ F
Sbjct: 322 FMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYE 381
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDK-QWRYTSMNPTTFRSALKAYALMGLVGE 165
TP++N ++W +I + G AL +F D + T+ N T + + + + GL +
Sbjct: 382 TPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKD 441
Query: 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS 225
Y LF +M E + IEP EHY+ +V+ LGRAGM E+ E I+G+ P + +W LL +
Sbjct: 442 GYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGM-PMRPSISVWGALLGA 500
Query: 226 SRVHGDMKLAKYALDKLLELDP---GMYV------------------------------- 251
++HG +L + A +KL ELDP G +V
Sbjct: 501 CKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDP 560
Query: 252 GC-WIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNR--SLY-------- 297
GC W+ +N ++ F + + E+ +E+ L+++ + M+ G++ + SLY
Sbjct: 561 GCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLEEEEKE 620
Query: 298 -----QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
++ A+A GLI P G+P R++K++ +C H A +F+S I+ RE++V+D F
Sbjct: 621 SEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISGIVGREIIVRDNNRF 680
Query: 353 HHFKDGKCSCKD 364
HHFK +CSC D
Sbjct: 681 HHFKQYQCSCGD 692
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 4/154 (2%)
Query: 12 IPWN-LLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ A + + E + E ++ G + S C N+C + L++G Q
Sbjct: 186 VAWNAVMTNAVLDGRPLETI-EAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHG 244
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
++ K G +V N +++ +C A F +NS+SW +++A +G E
Sbjct: 245 FVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEE 304
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
A + R + PT F + GL+G
Sbjct: 305 AFAAYLGA--RRSGEEPTDFMVSSALTTCAGLLG 336
>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g68930
gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/373 (28%), Positives = 171/373 (45%), Gaps = 54/373 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y++ +++C N L G+Q GLI + V N L+ + +CG IDD+ F
Sbjct: 370 DHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLF 429
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++++SWT ++SA G E + LF + T + A + GLV
Sbjct: 430 NEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVE 489
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ R F M Y I PS HYS M++ R+G EE + FI G+ P + W TLL
Sbjct: 490 KGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGM-PFPPDAIGWTTLLS 548
Query: 225 SSRVHGDMKLAKYALDKLLELDPGMYVG-------------------------------- 252
+ R G++++ K+A + L+ELDP G
Sbjct: 549 ACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKE 608
Query: 253 ---CWIEIQNKIYEFVSNEELT---SEVSDKLAEIEENMKELGFVLNRSL---------- 296
WI+ + K++ F +++E + ++ KL E+ + + G+ + S
Sbjct: 609 PGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVK 668
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ A+A GLI P G P RV K++ +C H+A + +S++ RE++V+D
Sbjct: 669 VKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVR 728
Query: 352 FHHFKDGKCSCKD 364
FH FKDG CSC D
Sbjct: 729 FHRFKDGTCSCGD 741
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 65/158 (41%)
Query: 1 LKLCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
L+L + + W ++K + + E +++ +D Y +L +C
Sbjct: 225 LQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLG 284
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
+N G Q A + + H VG+ LI++ +C + A F +KN +SWT ++
Sbjct: 285 AINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVV 344
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
G EA+ +F D Q + T A+ A A
Sbjct: 345 GYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACA 382
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVG-NCLININSRCGKIDDADLAFKSTPEK 110
++ S L + NVG + A GL V N L+ CG I+DA F+ EK
Sbjct: 175 LVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EK 233
Query: 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
+S+SW +I +G EA++ F++ + + M+ F S L A +G + E ++
Sbjct: 234 DSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQI 292
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 189/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ ++ YE + I+ ++ + L++C + L +G Q
Sbjct: 360 VSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQ 419
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G + VGN L+ + +CG ID+A+ F+ EK+ +SW +++ HG +A
Sbjct: 420 AVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQA 479
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L +F+ + + T L A + GL+ F SM + Y + P+ +HY+ M++
Sbjct: 480 LTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMID 539
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG EE + I+ + P + W LL +SR+HG+ +L + A + + +++P G
Sbjct: 540 LLGRAGRLEEAQDLIRNM-PFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSG 598
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEELTSEVSD 276
MYV W+E+QNKI+ F + E
Sbjct: 599 MYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKER 658
Query: 277 KLAEIEE---NMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
A +EE M+E G+V L Y ++ AVA G+++ P G P R
Sbjct: 659 IYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIR 718
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ +C HSA + +S I+ R ++++D FHHF +G CSC D +
Sbjct: 719 VMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 103/224 (45%), Gaps = 39/224 (17%)
Query: 161 GLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWR 220
GL+ F M E Y + P+ +HY+ M++ LGR EE
Sbjct: 778 GLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE------------------G 819
Query: 221 TLLLSSRVHGDMKLAKYALDKLLELDPGMY-------VGC-------WIEIQNKIYEFVS 266
LL +SR+HG+ +L + A ++ P VG W E+QNKI+ F
Sbjct: 820 ALLGASRIHGNTELGEKAAQMFFKMGPQNSGISKMRDVGVQKVPGYSWFEVQNKIHTFSV 879
Query: 267 NEELTSEVSDK--LAEIEENMKELGFVLNRSL-YQTKMKAVALGLISFPHGMPTRVIKS- 322
L+ E + L E++ M+E R+L Y ++ A ALG+++ P G P RV+K
Sbjct: 880 GLFLSRERENIGFLEELDLKMREREEEKERTLKYLSENLAAALGILTIPVGRPNRVMKKR 939
Query: 323 VGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V +C SA + MS I+ R + ++D H F + CSC + +
Sbjct: 940 VYVCEDCRSAIKHMSKIVGRLITLRDS---HRFNESICSCGEYW 980
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 36/151 (23%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK-------- 136
N L++ ++ G +D+A F + PEKNS+SW +++A V++G EA LF+
Sbjct: 146 NSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLI 205
Query: 137 ----------------DKQWRYTSM---NPTTFRSALKAYALMGLVGEAYRLFLSMEEVY 177
D +W + M + ++ + + YA G + +A RLF
Sbjct: 206 SWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE----- 260
Query: 178 HIEPSEE--HYSIMVEALGRAGMFEEVLEFI 206
P+ + ++ MV + GM +E F
Sbjct: 261 --SPTRDVFTWTAMVSGYVQNGMLDEAKTFF 289
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 11/162 (6%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
NCL+ R K+ DA F P ++++SW +IS G S+A LF + R
Sbjct: 208 NCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTR--- 264
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
+ T+ + + Y G++ EA F M E +E Y+ M+ + + E
Sbjct: 265 -DVFTWTAMVSGYVQNGMLDEAKTFFDEMP-----EKNEVSYNAMIAGYVQTKKMDIARE 318
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+ + + W T++ GD+ A+ D + + D
Sbjct: 319 LFESMPCRNISS--WNTMITGYGQIGDIAQARKFFDMMPQRD 358
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I + G I A F P+++ +SW II+ GH EAL++F + + S
Sbjct: 332 NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGES 391
Query: 145 MNPTTFRSALKAYA 158
+N TF AL A
Sbjct: 392 LNRATFGCALSTCA 405
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M +R L S N ++ R ++ DA F PEK+ +SW ++S +G+ EA
Sbjct: 106 MPERDLFSW----NVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEA 161
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS 172
++F + N ++ L AY G + EA LF S
Sbjct: 162 REVFDN----MPEKNSISWNGLLAAYVHNGRIEEACLLFES 198
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 105/408 (25%), Positives = 191/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ I++ ++ EL +Q D +++ +L +C + L +G + Y
Sbjct: 317 VSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTY 376
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + + V N LI++ +CG +D A+ F+ +++ +WT +I +GH +A
Sbjct: 377 IDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKA 436
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LD+F + + T+ L A GLV + + FL M + IEP+ HY +V+
Sbjct: 437 LDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVD 496
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
L RAG +E E I+ + P K ++W LL RV+ + +A+ + ++LEL+P
Sbjct: 497 LLARAGRLKEAYEVIENM-PIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGA 555
Query: 248 ------GMYVGC--W-----------------------IEIQNKIYEFVSNEE---LTSE 273
+Y C W IE+ +++EFV+ + T
Sbjct: 556 VYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKN 615
Query: 274 VSDKLAEIEENMKELGFVL---------------NRSLYQTKMKAVALGLISFPHGMPTR 318
+ KL ++ +++K G+ N ++ A+A GLI+ P G+ R
Sbjct: 616 IDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIR 675
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ MC H+ + +S + RE++V+D FHHFK G CSCKD +
Sbjct: 676 ITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 24/172 (13%)
Query: 16 LLLKACIKAKDYEMVHELLERIQLC---------CGFIDSYSICDILNSCLNPILLNVGT 66
L+L AC K KD ++ ++ C ID Y+ C ++S L
Sbjct: 224 LVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIF------ 277
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
M R +IS + + N+ G+ID A F PEK+ +SWT +I +
Sbjct: 278 ---RSMNNRDIISWTTIVSGFTNL----GEIDVARNYFDKMPEKDYVSWTAMIDGYIRSN 330
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL--VGEAYRLFLSMEEV 176
EAL+LF++ Q + T S L A A +G +GE R ++ ++
Sbjct: 331 RFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKI 382
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y+ + I L G Q ++ K GL + V L+ + CG++D A F
Sbjct: 117 DRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVF 176
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF---KDKQ 139
P+ + ++W IISA G E+ LF +DKQ
Sbjct: 177 DVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQ 214
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 186/376 (49%), Gaps = 56/376 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ +L++C+ L +G + YM K GL+ + N L+++ S+CG DA F
Sbjct: 236 DGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVF 295
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
E++ +SWT +I +G +EAL LF + + + + TF L A + G++
Sbjct: 296 DEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLD 355
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F M+E Y I P EH+ MV+ L RAG + ++I+ + P +IWRTLL
Sbjct: 356 EGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNM-PVPPNAVIWRTLLG 414
Query: 225 SSRVHGDMKLAKYA---LDKLLELDPGMYV---------GCWIEIQ-------------- 258
+ +HG ++L + A + +L + G +V W+++Q
Sbjct: 415 ACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKT 474
Query: 259 ---------NKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL---------- 296
N++YEF+ + + E LA+I + +K G+V R++
Sbjct: 475 PGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYV-PRTVNVLADIEEEE 533
Query: 297 ------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
+ T+ A+A L++ P G P R++K++ +C H A + +S + ERE++V+D
Sbjct: 534 KETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRS 593
Query: 351 SFHHFKDGKCSCKDAY 366
FHHFKDG CSCKD +
Sbjct: 594 RFHHFKDGSCSCKDYW 609
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/234 (17%), Positives = 104/234 (44%), Gaps = 7/234 (2%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYM 72
WN +++ ++++ EL ++ + D+++ + + + +++G + +
Sbjct: 103 WNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVV 162
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
+ G S V N L+++ S G + A F+ ++ ++W +I+ +G P+EAL
Sbjct: 163 VRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEAL 222
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA 192
L+++ + T S L A +G + R+ + M +V ++ ++ + +++
Sbjct: 223 TLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQ-NQHASNALLDL 281
Query: 193 LGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+ G F + + + + W +L++ V+G L AL EL+
Sbjct: 282 YSKCGNFRDAQKVFDEMEERSVVS--WTSLIVGLAVNG---LGNEALKLFGELE 330
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 194/412 (47%), Gaps = 58/412 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + +E ++ +++++ D +++ +L+SC + L++G Q +
Sbjct: 193 VSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRF 252
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+R L+ + VGN LI++ ++CG + A F S P+++ +W +I HG EA
Sbjct: 253 AGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEA 312
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F N TF L + GLV E + F M ++++P +HY MV+
Sbjct: 313 ITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVD 372
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD----- 246
GRAG +E LE I+ P + P++WRTLL S ++H ++++ + A+ L++L
Sbjct: 373 LFGRAGKLKEALEVIRS-SPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAG 431
Query: 247 -----PGMYVGC-------------------------WIEIQNKIYEFVSNEEL---TSE 273
G+Y WIE+ ++++ FV +++ + E
Sbjct: 432 DCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSRE 491
Query: 274 VSDKLAEIEENMKELGFVLNRS-------------------LYQTKMKAVALGLISFPHG 314
+ KL E+ +G+ + S Y ++ A+A GL P G
Sbjct: 492 IYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEG 551
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +C H+ +F+S +RE++V+D FHHFK G CSCK+ +
Sbjct: 552 TSLLIVKNLRVCRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 603
>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 116/408 (28%), Positives = 200/408 (49%), Gaps = 57/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERI--QLCCGFIDSYSICDILNSCLNPILLNVGTQAQ 69
+ W +++ + D ELL + + C ++++I L +C + L++G Q
Sbjct: 441 VTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIH 500
Query: 70 AYMTKRGLISHPA-VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
AY + + P V NCLI++ ++CG I DA L F + EKN ++WT +++ HG+
Sbjct: 501 AYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYG 560
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
EAL +F++ + ++ T L A + G++ + F M+ + + P EHY+
Sbjct: 561 EEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYAC 620
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL--- 245
+V+ LGRAG L I+ + P + P++W LL R+HG ++L +YA K+ EL
Sbjct: 621 LVDLLGRAGRLNAALRLIEEM-PMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASN 679
Query: 246 DPGMYV-------------------------------GC-WIE-IQNKIYEFVSN----- 267
+ G Y GC W+E I+ FV +
Sbjct: 680 NDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPH 739
Query: 268 -EELTSEVSDKLAEIEE--NMKELGFVLNRS--------LYQTKMK-AVALGLISFPHGM 315
+E+ +SD + I++ + E GF L+ L++ K A+A G+++ P G
Sbjct: 740 AKEIYQVLSDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGA 799
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCK 363
R+ K++ +CG H+A +MS II+ E++++D FHHFK+G CSCK
Sbjct: 800 AIRITKNLRVCGDCHTAFTYMSRIIDHEIILRDSSRFHHFKNGLCSCK 847
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 80/156 (51%), Gaps = 1/156 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++++ K +M E+ ++ GF D ++ ++L C + ++G Q
Sbjct: 194 VSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHG 253
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ +I + VGNCL+++ ++ G +D+A+ F + P K+ +SW +++ G +
Sbjct: 254 FAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFED 313
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
A+ LF+ Q M+ T+ +A+ YA GL EA
Sbjct: 314 AVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEA 349
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+Y+ + +C + G + A G +S+ VGN L+ + SRCG + DA F
Sbjct: 126 DNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVF 185
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
P + +SW II + G P AL++F
Sbjct: 186 DEMPVWDVVSWNSIIESYAKLGKPKMALEMF 216
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 48 SICDILNSCLNPILLNVGTQAQAY-------MTKRGLISHPAVGNCLININSRCGKIDDA 100
++ +L+ C + L G + Y + K G V N LI++ ++C K+D A
Sbjct: 367 TLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIA 426
Query: 101 DLAFKS-TP-EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
F S +P E++ ++WT +I HG ++AL+L + P F
Sbjct: 427 RAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAF 478
>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
Length = 662
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 180/375 (48%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
++ ++ +L C N L G Q + K L + VG L+++ +CG + A F
Sbjct: 289 NASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLF 348
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++ ++W +IS HG EA++LF+ + N TF + L A GL
Sbjct: 349 GEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCD 408
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
R F M+E+Y IEP +HYS MV+ L RAG E ++ I+ + P + P + TLL
Sbjct: 409 FGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSM-PFEPHPSAYGTLLA 467
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMYVGC--------------------- 253
+ RV+ +++ A+ A KL+E DP +Y G
Sbjct: 468 ACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKT 527
Query: 254 ----WIEIQNKIYEFVSNEELTSE---VSDKLAEIEENMKELGFV--------------- 291
WIEI+ ++EF SN+ L + + +KL ++ E MK +G+V
Sbjct: 528 PGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLK 587
Query: 292 LNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ + ++ A++ GLIS GM R+ K++ +CG H+A + +S I +RE++++D
Sbjct: 588 VQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTR 647
Query: 352 FHHFKDGKCSCKDAY 366
FHHF+ G CSC D +
Sbjct: 648 FHHFRGGHCSCGDYW 662
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 105/408 (25%), Positives = 191/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ I++ ++ EL +Q D +++ +L +C + L +G + Y
Sbjct: 338 VSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTY 397
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + + V N LI++ +CG +D A+ F+ +++ +WT +I +GH +A
Sbjct: 398 IDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKA 457
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LD+F + + T+ L A GLV + + FL M + IEP+ HY +V+
Sbjct: 458 LDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVD 517
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
L RAG +E E I+ + P K ++W LL RV+ + +A+ + ++LEL+P
Sbjct: 518 LLARAGRLKEAYEVIENM-PIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGA 576
Query: 248 ------GMYVGC--W-----------------------IEIQNKIYEFVSNEE---LTSE 273
+Y C W IE+ +++EFV+ + T
Sbjct: 577 VYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKN 636
Query: 274 VSDKLAEIEENMKELGFVL---------------NRSLYQTKMKAVALGLISFPHGMPTR 318
+ KL ++ +++K G+ N ++ A+A GLI+ P G+ R
Sbjct: 637 IDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIR 696
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ MC H+ + +S + RE++V+D FHHFK G CSCKD +
Sbjct: 697 ITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 24/172 (13%)
Query: 16 LLLKACIKAKDYEMVHELLERIQLC---------CGFIDSYSICDILNSCLNPILLNVGT 66
L+L AC K KD ++ ++ C ID Y+ C ++S L
Sbjct: 245 LVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIF------ 298
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
M R +IS + + N+ G+ID A F PEK+ +SWT +I +
Sbjct: 299 ---RSMNNRDIISWTTIVSGFTNL----GEIDVARNYFDKMPEKDYVSWTAMIDGYIRSN 351
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL--VGEAYRLFLSMEEV 176
EAL+LF++ Q + T S L A A +G +GE R ++ ++
Sbjct: 352 RFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKI 403
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y+ + I L G Q ++ K GL + V L+ + CG++D A F
Sbjct: 138 DRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVF 197
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF---KDKQ 139
P+ + ++W IISA G E+ LF +DKQ
Sbjct: 198 DVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQ 235
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 194/412 (47%), Gaps = 58/412 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + +E ++ +++++ D +++ +L+SC + L++G Q +
Sbjct: 175 VSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRF 234
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+R L+ + VGN LI++ ++CG + A F S P+++ +W +I HG EA
Sbjct: 235 AGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEA 294
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F N TF L + GLV E + F M ++++P +HY MV+
Sbjct: 295 ITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVD 354
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD----- 246
GRAG +E LE I+ P + P++WRTLL S ++H ++++ + A+ L++L
Sbjct: 355 LFGRAGKLKEALEVIRS-SPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAG 413
Query: 247 -----PGMYVGC-------------------------WIEIQNKIYEFVSNEEL---TSE 273
G+Y WIE+ ++++ FV +++ + E
Sbjct: 414 DCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSRE 473
Query: 274 VSDKLAEIEENMKELGFVLNRS-------------------LYQTKMKAVALGLISFPHG 314
+ KL E+ +G+ + S Y ++ A+A GL P G
Sbjct: 474 IYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEG 533
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +C H+ +F+S +RE++V+D FHHFK G CSCK+ +
Sbjct: 534 TSLLIVKNLRVCRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 585
>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 162/336 (48%), Gaps = 57/336 (16%)
Query: 87 LININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN 146
L+++ S+CG I A F + KN +SW +IS HG EAL L+++ + N
Sbjct: 498 LVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPN 557
Query: 147 PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFI 206
TF + L A + GLV E R+F SM+E Y+IE EHY+ MV+ LGRAG E+ EF+
Sbjct: 558 EVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFV 617
Query: 207 KGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD---PGMYV------------ 251
+ + P + W LL + RVH DM + + A +L ELD PG YV
Sbjct: 618 EKM-PIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRW 676
Query: 252 --------------------GCWIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKEL 288
WIEI ++I F + + T E+ + L + K L
Sbjct: 677 KEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGL 736
Query: 289 GFVLNRSLYQTKMK------------------AVALGLISFPHGMPTRVIKSVGMCGYSH 330
G++ + S +K A++LGLIS P RV K++ +CG H
Sbjct: 737 GYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCH 796
Query: 331 SACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+A +F+S I R ++ +D FHHF++GKCSC D +
Sbjct: 797 TATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGTQA 68
++ WN ++ A + + L R+Q I D ++ +L C N N G Q
Sbjct: 241 QVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQI 300
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A++ + + + V L+++ S CG+++ A F E+N+ SW +I +G
Sbjct: 301 HAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGET 360
Query: 129 SEALDLFKDKQ 139
EAL LFK Q
Sbjct: 361 QEALRLFKQMQ 371
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 58/137 (42%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ A + DY + +R+ D+++ L C + G Q + +
Sbjct: 143 WNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLI 202
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
G VGN LI++ ++C + F E+N ++W IISA GH ++AL
Sbjct: 203 ACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALV 262
Query: 134 LFKDKQWRYTSMNPTTF 150
LF Q + P F
Sbjct: 263 LFLRMQESEDGIQPDQF 279
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 186/376 (49%), Gaps = 56/376 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ +L++C+ L +G + YM K GL+ + N L+++ S+CG DA F
Sbjct: 236 DGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVF 295
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
E++ +SWT +I +G +EAL LF + + + + TF L A + G++
Sbjct: 296 DEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLD 355
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F M+E Y I P EH+ MV+ L RAG + ++I+ + P +IWRTLL
Sbjct: 356 EGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNM-PVPPNAVIWRTLLG 414
Query: 225 SSRVHGDMKLAKYA---LDKLLELDPGMYVGC---------WIEIQ-------------- 258
+ +HG ++L + A + +L + G +V W+++Q
Sbjct: 415 ACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKT 474
Query: 259 ---------NKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL---------- 296
N++YEF+ + + E LA+I + +K G+V R++
Sbjct: 475 PGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYV-PRTVNVLADIEEEE 533
Query: 297 ------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
+ T+ A+A L++ P G P R++K++ +C H A + +S + ERE++V+D
Sbjct: 534 KETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRS 593
Query: 351 SFHHFKDGKCSCKDAY 366
FHHFKDG CSCKD +
Sbjct: 594 RFHHFKDGSCSCKDYW 609
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/234 (17%), Positives = 104/234 (44%), Gaps = 7/234 (2%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYM 72
WN +++ ++++ EL ++ + D+++ + + + +++G + +
Sbjct: 103 WNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVV 162
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
+ G S V N L+++ S G + A F+ ++ ++W +I+ +G P+EAL
Sbjct: 163 VRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEAL 222
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA 192
L+++ + T S L A +G + R+ + M +V ++ ++ + +++
Sbjct: 223 TLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQ-NQHASNALLDL 281
Query: 193 LGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+ G F + + + + W +L++ V+G L AL EL+
Sbjct: 282 YSKCGNFRDAQKVFDEMEERSVVS--WTSLIVGLAVNG---LGNEALKLFGELE 330
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 181/374 (48%), Gaps = 58/374 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ IL +C + L+ G + Y + G V N ++++ +CG + A F
Sbjct: 553 DGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLF 612
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP--TTFRSALKAYALMGL 162
P K+ +SWT +I+ HG+ SEA++ F Q R T + P +F S L A + GL
Sbjct: 613 DMIPNKDLVSWTVMIAGYGMHGYGSEAINTFN--QMRMTGIEPDEVSFISILYACSHSGL 670
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
+ E +++F M++ IEP+ EHY+ MV+ L R G + +FIK + P K IW L
Sbjct: 671 LDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAM-PIKPDATIWGAL 729
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------------------------- 251
L R+H D+KLA+ +++ EL+P G YV
Sbjct: 730 LCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLK 789
Query: 252 ---GC-WIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGF-------VLNRSLY 297
GC WIEI+ KI FV+ + ++ L + MKE G+ +LN
Sbjct: 790 KNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTAYALLNADER 849
Query: 298 QTKMK--------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
+ ++ A+A G+++ P G RV K++ +CG H +FMS RE++++D
Sbjct: 850 EKEVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRVCGDCHEMAKFMSKSASREIILRDS 909
Query: 350 GSFHHFKDGKCSCK 363
FHHFKDG CSC+
Sbjct: 910 SRFHHFKDGSCSCR 923
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y++ ILN+C L G Y+ + L ++ V N L ++ ++CG + DA F
Sbjct: 453 DVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVF 512
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+K+ +SW +I + P+EAL LF + Q R + + TT L A A
Sbjct: 513 SHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQ-RESKPDGTTVACILPACA 565
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 1/151 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ +K + E+ ++ + ID ++ ++ +C N L +G +Y
Sbjct: 318 ISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSY 377
Query: 72 MTKRGLISHPA-VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K + N L+++ S+CG ++ A F+ EK +SWT +I+ V G
Sbjct: 378 SIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDG 437
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
A+ LF + + R + S L A A+ G
Sbjct: 438 AIKLFDEMKSRGVVPDVYAVTSILNACAING 468
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 4/144 (2%)
Query: 30 VHELLERIQLCCGFIDSY----SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGN 85
V +L ++L C +S + C IL C + G + ++ + G++ +G
Sbjct: 130 VGDLKNAMELLCSSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGV 189
Query: 86 CLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM 145
L+ + +CG + + + F E W +IS G+ E+++LFK
Sbjct: 190 KLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKP 249
Query: 146 NPTTFRSALKAYALMGLVGEAYRL 169
N TF S LK +A + V E ++
Sbjct: 250 NSYTFSSILKCFAAVARVEEGRQV 273
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 184/408 (45%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ +A + L +Q + + ++ +L SC G Y
Sbjct: 289 VAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFY 348
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K+ + +G LI+ ++CG ID + FK KN +WT +I N+G A
Sbjct: 349 IKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMA 408
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+ F N TF L A + LV + LF SM + IEP EHY MV+
Sbjct: 409 LEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVD 468
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG EE +FI + P ++WRTLL S R H ++++A+ +L+ + L+P G
Sbjct: 469 ILGRAGFLEEAYQFIDNM-PFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSG 527
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNE---ELTSE 273
Y+ GC IE+ ++EF S + + + E
Sbjct: 528 DYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKE 587
Query: 274 VSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPTR 318
+ D L ++ + +K LG+V N + ++ A+A GLI R
Sbjct: 588 IHDALDKMMKQIKRLGYVPNTDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRTTIR 647
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ MC H+A +F+S + ER ++V+D FHHFKDG CSC D +
Sbjct: 648 ISKNLRMCRDCHNATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 70/150 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L K ++ V +L +I D ++ +L +C L +G Y
Sbjct: 188 VAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEY 247
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ +GL + + LI++ ++CG++D A F +++ ++W+ +IS EA
Sbjct: 248 IVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEA 307
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
L+LF + Q N T S L + A++G
Sbjct: 308 LNLFHEMQKGNVYPNEVTMVSVLYSCAMLG 337
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L +C L G Q A + K G S+ V N LI + + CG+I A F
Sbjct: 120 DKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVF 179
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
PE++ ++W ++S +G E + LF+
Sbjct: 180 DGMPERSIVAWNSMLSGYTKNGLWDEVVKLFR 211
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 189/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ ++ YE + I+ ++ + L++C + L +G Q
Sbjct: 360 VSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQ 419
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G + VGN L+ + +CG ID+A+ F+ EK+ +SW +++ HG +A
Sbjct: 420 AVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQA 479
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L +F+ + + T L A + GL+ F SM + Y + P+ +HY+ M++
Sbjct: 480 LTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMID 539
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG EE + I+ + P + W LL +SR+HG+ +L + A + + +++P G
Sbjct: 540 LLGRAGRLEEAQDLIRNM-PFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSG 598
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEELTSEVSD 276
MYV W+E+QNKI+ F + E
Sbjct: 599 MYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKER 658
Query: 277 KLAEIEE---NMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
A +EE M+E G+V L Y ++ AVA G+++ P G P R
Sbjct: 659 IYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIR 718
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ +C HSA + +S I+ R ++++D FHHF +G CSC D +
Sbjct: 719 VMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 36/151 (23%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK-------- 136
N L++ ++ G +D+A F + PEKNS+SW +++A V++G EA LF+
Sbjct: 146 NSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLI 205
Query: 137 ----------------DKQWRYTSM---NPTTFRSALKAYALMGLVGEAYRLFLSMEEVY 177
D +W + M + ++ + + YA G + +A RLF
Sbjct: 206 SWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE----- 260
Query: 178 HIEPSEE--HYSIMVEALGRAGMFEEVLEFI 206
P+ + ++ MV + GM +E F
Sbjct: 261 --SPTRDVFTWTAMVSGYVQNGMLDEAKTFF 289
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 11/162 (6%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
NCL+ R K+ DA F P ++++SW +IS G S+A LF + R
Sbjct: 208 NCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTR--- 264
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
+ T+ + + Y G++ EA F M E +E Y+ M+ + + E
Sbjct: 265 -DVFTWTAMVSGYVQNGMLDEAKTFFDEMP-----EKNEVSYNAMIAGYVQTKKMDIARE 318
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+ + + W T++ GD+ A+ D + + D
Sbjct: 319 LFESMPCRNISS--WNTMITGYGQIGDIAQARKFFDMMPQRD 358
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I + G I A F P+++ +SW II+ GH EAL++F + + S
Sbjct: 332 NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGES 391
Query: 145 MNPTTFRSALKAYA 158
+N TF AL A
Sbjct: 392 LNRATFGCALSTCA 405
Score = 37.7 bits (86), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M +R L S N ++ R ++ DA F PEK+ +SW ++S +G+ EA
Sbjct: 106 MPERDLFSW----NVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEA 161
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS 172
++F + N ++ L AY G + EA LF S
Sbjct: 162 REVFDN----MPEKNSISWNGLLAAYVHNGRIEEACLLFES 198
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 188/411 (45%), Gaps = 63/411 (15%)
Query: 12 IPWNLLLKA----CIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGT 66
I WN L+ + + + H ++E GF DS +I +L+SC L+ G
Sbjct: 192 IAWNSLISGYDQNGLPQESIGLFHLMME-----SGFQPDSATIVSLLSSCSQLGALDFGC 246
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Y G + +G LIN+ +RCG + A F S E+N ++WT +IS HG
Sbjct: 247 WLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHG 306
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
+ +A++LF + + N TF + L A A GL+ + R+F SM+E Y + P EH
Sbjct: 307 YGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHN 366
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL- 245
MV+ GRAG+ + +FIK +P + P +W ++L + R+H + L + +L +
Sbjct: 367 VCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVE 426
Query: 246 --DPGMYVG--------------------------------CWIEIQNKIYEFVSNEE-- 269
+PG YV IEI K Y F ++
Sbjct: 427 PENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSH 486
Query: 270 -LTSEVSDKLAEIEENMKELGFV-----LNRSL----------YQTKMKAVALGLISFPH 313
T+ + L E+ E G+V L L Y ++ A+A GL+
Sbjct: 487 PQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQ 546
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G R++K++ +C HSA + +S I +RE++V+D FHHFKDG CSC D
Sbjct: 547 GETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLD 597
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 44/90 (48%)
Query: 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK 105
+Y+ ++ +C + L +G + +++ G S V LI + ++ + A F
Sbjct: 125 NYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFD 184
Query: 106 STPEKNSLSWTFIISARVNHGHPSEALDLF 135
+ P++ ++W +IS +G P E++ LF
Sbjct: 185 AMPQRTIIAWNSLISGYDQNGLPQESIGLF 214
>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Brachypodium distachyon]
Length = 874
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 114/407 (28%), Positives = 198/407 (48%), Gaps = 55/407 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL-LNVGTQAQA 70
+ W+ +L +A D + + ++ + + ++I +++C +P ++ G Q A
Sbjct: 467 VAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHA 526
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K VG+ L+ + +R G ID A + F+ +++ +SW +IS HG+ E
Sbjct: 527 ISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKE 586
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
ALD F+ + M+ TF + + GLV E + F SM ++I P+ EHYS MV
Sbjct: 587 ALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMV 646
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ RAG +E + I+G+ P ++WRTLL + RVH +++L K A KLL L+P
Sbjct: 647 DLYSRAGKLDETMNLIEGM-PFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDS 705
Query: 248 GMYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTS 272
YV GC WI+I+NK++ F++ ++ L+
Sbjct: 706 ATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSE 765
Query: 273 EVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGMPT 317
++ KL + +K+ G+ N S+ ++ A+A GLI+ P P
Sbjct: 766 QIYAKLKAMTTRLKQEGYCPNTSVVLHDIAEEQKETMLVMHSERLALAFGLIATPPRTPL 825
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+++K++ +CG H + +S I +RE++++D FHHF G CSC D
Sbjct: 826 QIVKNLRVCGDCHMVMKMVSLIEDREIIMRDCSRFHHFNAGACSCGD 872
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/234 (19%), Positives = 109/234 (46%), Gaps = 4/234 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W LL ++ + V L R++ + + ++ +L++ + +++G + A
Sbjct: 167 VTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQ 226
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G S V N LIN+ S+CG +++A F+ ++ +SW +++ + + H EA
Sbjct: 227 SVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEA 286
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF-LSMEEVYHIEPSEEHYSIMV 190
L LF D + ++ +T+ + +K A + + A +L ++ +H + + + ++
Sbjct: 287 LQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNV--MTAIM 344
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+A + G ++ ++PG + W ++ + D+ LA ++ E
Sbjct: 345 DAYSKCGELDDAFNIFL-LMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMRE 397
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Query: 41 CGFIDSYSICDILNSC-LNPILLNVGTQAQAYMTKRGL-ISHPAVGNCLININSRCGKID 98
CG + ++ +L C L P ++ G Q K G + VG L+++ +CG ++
Sbjct: 94 CGRVQGAAVSRVLKVCGLIPDRVS-GEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVE 152
Query: 99 DADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
D + F+ P++N ++WT +++ V S+ + LF + NP TF S L A A
Sbjct: 153 DGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVA 212
Query: 159 LMGLVGEAYRL 169
G V R+
Sbjct: 213 SQGAVDLGRRV 223
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 95/235 (40%), Gaps = 9/235 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ CI+ D + L R++ + ++ +L + + PILL Q A
Sbjct: 370 VSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASI-PILL---PQIHAQ 425
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K P+VG L+ S+ G ++A FK K+ ++W+ ++S G A
Sbjct: 426 IIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGA 485
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
++F + N T SA+ A A + R F ++ Y + + S +V
Sbjct: 486 TNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVT 545
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
R G + + L + W +++ HG +K ALD +++
Sbjct: 546 MYARKGSIDSARIVFERQTDRDL--VSWNSMISGYAQHG---YSKEALDTFRQME 595
>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
Length = 706
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 111/410 (27%), Positives = 185/410 (45%), Gaps = 56/410 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ + L + ++ + ++ L +C L G +
Sbjct: 299 HVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHS 358
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
RG+ +G LI++ S+CG + A F S E+N +WT +S +G +
Sbjct: 359 CAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRD 418
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
L LFK + N TF L+ ++ GLV E F SM+ + I+P EHY MV
Sbjct: 419 CLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMV 478
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD---- 246
+ GRAG ++ + FI G+ P + +W LL +SR+H +++L KYA+DKL+ ++
Sbjct: 479 DLYGRAGRLDDAVNFINGM-PLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKND 537
Query: 247 ------PGMYV------------------------GC-WIEIQNKIYEFV---SNEELTS 272
+Y GC IE+ K++EF
Sbjct: 538 AAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHK 597
Query: 273 EVSDKLAEIEENMKELGFVLNR----------------SLYQTKMKAVALGLISFPHGMP 316
E+ LAE+ + ++ G++ N SL+ K+ A+A GL++ P M
Sbjct: 598 EIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKL-AIAFGLVALPEDME 656
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C H + +S + RE+V++D FHHFKDG CSCKD +
Sbjct: 657 IRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 95 GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
G+ D A F P+++ ++W +I+ V+ G EAL LF + + ++ T SAL
Sbjct: 282 GEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSAL 341
Query: 155 KAYALMG 161
A A +G
Sbjct: 342 TACAQLG 348
>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 196/419 (46%), Gaps = 68/419 (16%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN +++ + ++ E ++ ++++ +L +C + L +G + +
Sbjct: 80 WNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVV 139
Query: 74 KR---------GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
K G++ + VG L+++ ++CG ++ A F PEK+ +SW +I
Sbjct: 140 KEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYAL 199
Query: 125 HGHPSEALDLFKDKQWRYTSM----NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
+G P EA+DLF Q R + + TF L GLV E R F SM + +
Sbjct: 200 NGLPKEAIDLFLQMQ-RENKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLT 258
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
PS EHY MV+ LGRAG+ +E + I+ + P + ++W LL + R+H D +LA+ AL
Sbjct: 259 PSIEHYGCMVDLLGRAGLLDEAHQLIRNM-PMEANAIVWGALLGACRIHRDTQLAELALK 317
Query: 241 KLLELDP---GMYV-------------------------------GC-WIEIQNKIYEFV 265
+L+EL+P G YV GC WIE+ ++EF+
Sbjct: 318 QLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFL 377
Query: 266 SNEE---LTSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALG 307
++ L+ ++ KL E+ + MK G+V ++ A+A G
Sbjct: 378 VGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFG 437
Query: 308 LISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
LIS RV+K++ +CG H A + +S+I RE+ V+D FH F++G CSC D +
Sbjct: 438 LISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 496
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 188/411 (45%), Gaps = 63/411 (15%)
Query: 12 IPWNLLLKA----CIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGT 66
I WN L+ + + + H ++E GF DS +I +L+SC L+ G
Sbjct: 256 IAWNSLISGYDQNGLPQESIGLFHLMME-----SGFQPDSATIVSLLSSCSQLGALDFGC 310
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Y G + +G LIN+ +RCG + A F S E+N ++WT +IS HG
Sbjct: 311 WLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHG 370
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
+ +A++LF + + N TF + L A A GL+ + R+F SM+E Y + P EH
Sbjct: 371 YGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHN 430
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL- 245
MV+ GRAG+ + +FIK +P + P +W ++L + R+H + L + +L +
Sbjct: 431 VCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVE 490
Query: 246 --DPGMYVG--------------------------------CWIEIQNKIYEFVSNEE-- 269
+PG YV IEI K Y F ++
Sbjct: 491 PENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSH 550
Query: 270 -LTSEVSDKLAEIEENMKELGFV-----LNRSL----------YQTKMKAVALGLISFPH 313
T+ + L E+ E G+V L L Y ++ A+A GL+
Sbjct: 551 PQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQ 610
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G R++K++ +C HSA + +S I +RE++V+D FHHFKDG CSC D
Sbjct: 611 GETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLD 661
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 44/90 (48%)
Query: 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK 105
+Y+ ++ +C + L +G + +++ G S V LI + ++ + A F
Sbjct: 189 NYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFD 248
Query: 106 STPEKNSLSWTFIISARVNHGHPSEALDLF 135
+ P++ ++W +IS +G P E++ LF
Sbjct: 249 AMPQRTIIAWNSLISGYDQNGLPQESIGLF 278
>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 829
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 192/394 (48%), Gaps = 63/394 (15%)
Query: 25 KDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVG 84
+DY+ +ER++L I +++ ++++ + +L G + A K G S A+G
Sbjct: 443 QDYQ-----IERMELG---ISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIG 494
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N L+++ SRCG + DA F + N +SWT +IS HG+ + AL+LF D
Sbjct: 495 NSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVK 554
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
N T+ + L A + GLV E F M++ + + P EHY+ MV+ LGR+G+ E+ L+
Sbjct: 555 PNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALD 614
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DPGMYV---------- 251
FI + P ++ L+W+TLL + + H +M + + A + +++L DP YV
Sbjct: 615 FINEM-PCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEAG 673
Query: 252 ----------------------GCWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMK 286
W+ + N I+EF + + E+ KL + +K
Sbjct: 674 LWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTKLETLIREIK 733
Query: 287 ELGFVLNRS---------------LYQTKMKAVALGLISFPHGM-PTRVIKSVGMCGYSH 330
+G+V + S L ++ AVA GLIS P R+ K++ +C H
Sbjct: 734 VMGYVPDTSVVLHDMSDELKELCLLQHSEKIAVAFGLISCTSATKPIRIFKNLRVCVDCH 793
Query: 331 SACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
SA +++S RE++++D FH KDG+CSC +
Sbjct: 794 SALKYVSKATGREIILRDSNRFHRMKDGECSCGE 827
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC---GKIDDAD 101
D Y++ +L++C +G Q + + GL S V L+++ ++ + +A
Sbjct: 254 DQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAR 313
Query: 102 LAFKSTPEKNSLSWTFIISARVNHG-HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
F P+ N ++WT ++S V G ++ + LF N T+ S LKA A +
Sbjct: 314 EVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANL 373
Query: 161 G 161
G
Sbjct: 374 G 374
Score = 37.7 bits (86), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L +C N + G Q + K L VGN L+++ + G I++A AF EKN
Sbjct: 366 MLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKN 425
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR--SALKAYALMGLVGEAYRL 169
+S+ S ++ S + ++D Q + +TF S + A A +G++ + RL
Sbjct: 426 MVSF----SGNLDGDGRS---NTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRL 478
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 184/375 (49%), Gaps = 58/375 (15%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
S+ L++C + + G ++ K G + +V N L++ S+CG + A L F+
Sbjct: 271 SLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERM 330
Query: 108 PEKNSL-SWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
PEK S+ SWT +I+ HG+ EA+ LF + + + F S L A + GL+ +
Sbjct: 331 PEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKG 390
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226
Y F M+++Y+IEP+ EHY MV+ GRAG ++ EFI + P +IWRTLL +
Sbjct: 391 YEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHM-PVLPTAIIWRTLLGAC 449
Query: 227 RVHGDMKLAKYALDKLLELDP---GMYV---------GCW-------------------- 254
+HG++KLA+ ++L ELDP G +V G W
Sbjct: 450 SIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPG 509
Query: 255 ---IEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMK-------ELGFVLNR------- 294
IE+ +Y FV+ E +T E +KL EI ++ E+G VL+
Sbjct: 510 WSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEVGSVLHDIEDEEKE 569
Query: 295 ---SLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
S + K+ AVA G+ G R++K++ +C H+ + +S + E+VV+D
Sbjct: 570 DSVSRHSEKL-AVAFGIARLCKGSIIRIVKNLRVCRDCHTVMKLISKVYGLEIVVRDRSR 628
Query: 352 FHHFKDGKCSCKDAY 366
FH FK G CSC+D +
Sbjct: 629 FHSFKTGSCSCRDYW 643
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 9/164 (5%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+DS+S +L + + L G Q GL +H VG L+++ S CG + A
Sbjct: 104 LDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKV 163
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F+ E N ++W +++A G A +F +R N T++ L Y G +
Sbjct: 164 FEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFR----NLTSWNVMLAGYTKAGEL 219
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK 207
A +LFL M + +S M+ G F E F +
Sbjct: 220 ELARKLFLEMP-----VKDDVSWSTMIVGFAHNGFFYEAFGFFR 258
>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
Length = 699
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 111/407 (27%), Positives = 184/407 (45%), Gaps = 56/407 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + L + ++ + ++ L +C L G +
Sbjct: 293 VAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSC 352
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
RG+ +G LI++ S+CG + A F S E+N +WT +S +G +
Sbjct: 353 AHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDC 412
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LFK + N TF L+ ++ GLV E F SM+ + I+P EHY MV+
Sbjct: 413 LALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVD 472
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD----- 246
GRAG ++ + FI G+ P + +W LL +SR+H +++L KYA+DKL+ ++
Sbjct: 473 LYGRAGRLDDAVNFINGM-PLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDA 531
Query: 247 -----PGMYV------------------------GC-WIEIQNKIYEFV---SNEELTSE 273
+Y GC IE+ K++EF E
Sbjct: 532 AHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKE 591
Query: 274 VSDKLAEIEENMKELGFVLNR----------------SLYQTKMKAVALGLISFPHGMPT 317
+ LAE+ + ++ G++ N SL+ K+ A+A GL++ P M
Sbjct: 592 IEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKL-AIAFGLVALPEDMEI 650
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
R++K++ +C H + +S + RE+V++D FHHFKDG CSCKD
Sbjct: 651 RIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKD 697
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 95 GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
G+ D A F P+++ ++W +I+ V+ G EAL LF + + ++ T SAL
Sbjct: 275 GEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSAL 334
Query: 155 KAYALMG 161
A A +G
Sbjct: 335 TACAQLG 341
>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 852
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 106/375 (28%), Positives = 178/375 (47%), Gaps = 89/375 (23%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + + IL++C LL G Q + K GL S +V N L+ + ++CG +DDAD F
Sbjct: 514 DQFIVASILSACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIF 573
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
S ++ ++WT +I +G ++L F+
Sbjct: 574 VSMHVRDVITWTALIVGYARNGKGRDSLKYFQ---------------------------- 605
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
M+++Y IEP EHY+ M++ GR G +E E + + K +W+ LL
Sbjct: 606 -------QMKKIYGIEPGPEHYACMIDLFGRLGKLDEAKEILNQM-DVKPDATVWKALLA 657
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMYV----------------------- 251
+ RVHG+++L + A L EL+P MY+
Sbjct: 658 ACRVHGNLELGERAATNLFELEPMNAMPYVMLSNMYLAARKWDDAAKIRRLMKSKGITKE 717
Query: 252 -GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV--LNRSL-------- 296
GC WIE+ ++++ F+S + +E+ K+ EI +KE+G+V +N SL
Sbjct: 718 PGCSWIEMNSRLHTFISEDRGHPREAEIYSKIDEIIRRIKEVGYVPDMNFSLHDMDREGK 777
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ AVA GL++ P G P R+ K++ +CG HSA +++S + R ++++D
Sbjct: 778 EAGLAYHSEKLAVAFGLLASPPGAPIRIFKNLRVCGDCHSAMKYISGVFTRHIILRDSNC 837
Query: 352 FHHFKDGKCSCKDAY 366
FHHFK+G+CSC+D +
Sbjct: 838 FHHFKEGECSCEDYW 852
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 2/127 (1%)
Query: 32 ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91
+L +R++L Y++ IL C L+ G Y+ K G S+ V L+++
Sbjct: 198 DLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMY 257
Query: 92 SRCGKIDDADLAFKSTP--EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTT 149
++C I +A++ FK + N + WT +++ +G +A++ F+ N T
Sbjct: 258 AKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFT 317
Query: 150 FRSALKA 156
F S L A
Sbjct: 318 FPSILTA 324
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ IL +C + G Q + + G + V + L+++ ++CG + A
Sbjct: 314 NQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVL 373
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALK 155
++ + + +SW +I V HG EA+ LFK R ++ TF S L
Sbjct: 374 ENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLN 424
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N L+N S+ G+IDDA F +++ +W ++S N G EA +LF ++S
Sbjct: 119 NQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNG----FSS 174
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSM 173
+ T+ S + Y G EA+ LF M
Sbjct: 175 RSSITWSSLISGYCRFGRQAEAFDLFKRM 203
>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 878
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 112/423 (26%), Positives = 190/423 (44%), Gaps = 70/423 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI----------------DSYSICDILNS 55
+ WN L+ C+ +L+ +QL ++ ++ +L
Sbjct: 454 VSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPG 513
Query: 56 CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSW 115
C G + Y + L S AVG+ L+++ ++CG + + F P +N ++W
Sbjct: 514 CAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITW 573
Query: 116 TFIISARVNHGHPSEALDLFKD-KQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174
+I A HG EA+ LF + + N TF +AL A + GLV LF ME
Sbjct: 574 NVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGME 633
Query: 175 EVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKL 234
+ ++P+ + ++ +V+ LGRAG +E I + PG+ W +LL + R+H +++L
Sbjct: 634 RDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVEL 693
Query: 235 AKYALDKLLELDPG---MYV-------------------------------GC-WIEIQN 259
+ A ++L EL+PG YV GC WIE+
Sbjct: 694 GEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDG 753
Query: 260 KIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL---------------YQTKM 301
I+ F++ E ++EV + + E M+ G+ + S Y ++
Sbjct: 754 AIHRFMAGESSHPASAEVHAHMDALWERMRREGYAPDTSCVLHDVDEDEKAAMLRYHSEK 813
Query: 302 KAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCS 361
A+A GL+ P G RV K++ +C H A +FMS ++ R++V++D FHHF+DG CS
Sbjct: 814 LAIAFGLLRAPPGAAIRVAKNLRVCNDCHEAAKFMSKMVGRDIVLRDVRRFHHFRDGSCS 873
Query: 362 CKD 364
C D
Sbjct: 874 CGD 876
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 1/127 (0%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDS-YSICDILNSCLNPILLNVGTQAQAYM 72
WN ++ +A E EL R++ G S ++ +L +C Y+
Sbjct: 354 WNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYV 413
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
KRG+ + V N L+++ +R G++D A F ++ +SW +I+ V GH +EA
Sbjct: 414 VKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAF 473
Query: 133 DLFKDKQ 139
L + Q
Sbjct: 474 QLVTEMQ 480
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 15/159 (9%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFID--SYSICDILNSCLN---PILLNVGT 66
+ +N L+ A + +E + L R L G D S+++ +L +C + +G
Sbjct: 134 VSYNSLISALCLFRQWERALDAL-RDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRLGR 192
Query: 67 QAQAYMTKRGLISHPAVG---NCLININSRCGKIDDADLAFKSTPEKNS------LSWTF 117
+A A+ KRG + N L+++ +R G +DDA F++T S ++W
Sbjct: 193 EAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNT 252
Query: 118 IISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+IS V G +EA+++ D + TF SAL A
Sbjct: 253 MISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPA 291
>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
Length = 706
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 111/408 (27%), Positives = 184/408 (45%), Gaps = 56/408 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ + L + ++ + ++ L +C L G +
Sbjct: 299 HVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHS 358
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
RG+ +G LI++ S+CG + A F S E+N +WT +S +G +
Sbjct: 359 CAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRD 418
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
L LFK + N TF L+ ++ GLV E F SM+ + I+P EHY MV
Sbjct: 419 CLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMV 478
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD---- 246
+ GRAG ++ + FI G+ P + +W LL +SR+H +++L KYA+DKL+ ++
Sbjct: 479 DLYGRAGRLDDAVNFINGM-PLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKND 537
Query: 247 ------PGMYV------------------------GC-WIEIQNKIYEFV---SNEELTS 272
+Y GC IE+ K++EF
Sbjct: 538 AAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHK 597
Query: 273 EVSDKLAEIEENMKELGFVLNR----------------SLYQTKMKAVALGLISFPHGMP 316
E+ LAE+ + ++ G++ N SL+ K+ A+A GL++ P M
Sbjct: 598 EIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKL-AIAFGLVALPEDME 656
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
R++K++ +C H + +S + RE+V++D FHHFKDG CSCKD
Sbjct: 657 IRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKD 704
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 95 GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
G+ D A F P+++ ++W +I+ V+ G EAL LF + + ++ T SAL
Sbjct: 282 GEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSAL 341
Query: 155 KAYALMG 161
A A +G
Sbjct: 342 TACAQLG 348
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 107/410 (26%), Positives = 200/410 (48%), Gaps = 60/410 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + D L +R++ D ++ +L +C LL +G Q +
Sbjct: 219 VVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVH 278
Query: 72 MTK--RGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ K + LI + N LI++ +CG ++DA+ AF EK+ +SW+ +++ +G+
Sbjct: 279 VLKFDQDLI----LNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSR 334
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
+AL+LF+ + + N T L A + GLV + + F SM++++ ++P EHY +
Sbjct: 335 QALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCL 394
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
++ LGRAG +E ++ I + + + WRTLL + RVH ++ LA YA K++EL+P
Sbjct: 395 IDLLGRAGRLDEAVKLIHEM-ECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPED 453
Query: 248 -GMYV-------------------------------GC-WIEIQNKIYEFV---SNEELT 271
G Y+ GC WIE+ +I+ F+ ++
Sbjct: 454 AGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKI 513
Query: 272 SEVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMP 316
E+ +L ++ E + +G+V + + Y ++ A+ GL++
Sbjct: 514 EEIVQRLNDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKT 573
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+ K++ +CG H + +S + R +V++DP +HHF+DG CSC D +
Sbjct: 574 VRIRKNLRICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q + K GL S V + LI++ S+ +D+A F P ++ + W II +
Sbjct: 173 QLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNS 232
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
+EAL+LFK + + T S L+A + L+
Sbjct: 233 DGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALL 269
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F D+ + +++ C + G + ++ +G V N L+N+ + +++A+
Sbjct: 52 FADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAED 111
Query: 103 AFKSTPEKNSLSWTFIISARVN 124
F PE+N +SWT +ISA N
Sbjct: 112 LFDEMPERNVVSWTTMISAYSN 133
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 175/367 (47%), Gaps = 54/367 (14%)
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
L++C + L +G Q + K G + VGN L+ + +CG D+A+ F+ EK+
Sbjct: 398 LSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDV 457
Query: 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS 172
+SW +I+ HG +AL LF+ + + T L A + GL+ F S
Sbjct: 458 VSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYS 517
Query: 173 MEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDM 232
M+ Y+++P+ +HY+ M++ LGRAG EE ++ + P W LL +SR+HG+
Sbjct: 518 MDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNM-PFDPGAASWGALLGASRIHGNT 576
Query: 233 KLAKYALDKLLELDP---GMYV--------------------------------GCWIEI 257
+L + A + + +++P GMYV W+E+
Sbjct: 577 ELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEV 636
Query: 258 QNKIYEFVSNEELTSEVSDKLAEIEE---NMKELGFVLNRSL---------------YQT 299
QNKI+ F + E A +EE M+ G+V + L Y +
Sbjct: 637 QNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHS 696
Query: 300 KMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGK 359
+ AVA G+++ P G P RV+K++ +C H+A + +S I+ R ++++D FHHF +G
Sbjct: 697 EKLAVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGI 756
Query: 360 CSCKDAY 366
CSC D +
Sbjct: 757 CSCGDYW 763
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 75/163 (46%), Gaps = 14/163 (8%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N ++ ++ + + +L +++ D +S +L + L +
Sbjct: 78 VSYNAMISGYLRNAKFSLARDLFDKMPE----RDLFSWNVMLTGYVRNRRLGEAHKLFDL 133
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M K+ ++S N +++ ++ G +D+A F P +NS+SW +++A V++G EA
Sbjct: 134 MPKKDVVSW----NAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEA 189
Query: 132 LDLFKDK-QWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSM 173
LF+ + W S N + Y ++G+A +LF M
Sbjct: 190 RRLFESQSNWELISWN-----CLMGGYVKRNMLGDARQLFDRM 227
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I + G I A F P+++ +SW IIS +GH EAL++F + + S
Sbjct: 329 NTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGES 388
Query: 145 MNPTTFRSALKAYA 158
N +TF AL A
Sbjct: 389 SNRSTFSCALSTCA 402
>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
Length = 803
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 113/419 (26%), Positives = 201/419 (47%), Gaps = 64/419 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-----------DSYSICDILNSCLNPI 60
+ WN ++ + ++ +E LL ++Q + +S ++ IL SC
Sbjct: 385 VTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALS 444
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L G + AY K L + AVG+ L+++ ++CG + + F P+KN ++W II
Sbjct: 445 ALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIM 504
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
A HG+ EA+DL + + N TF S A + G+V E R+F M+ Y +E
Sbjct: 505 AYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVE 564
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
PS +HY+ +V+ LGRAG +E + + + W +LL +SR+H ++++ + A
Sbjct: 565 PSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQ 624
Query: 241 KLLELDPGM---YV-------------------------------GC-WIEIQNKIYEFV 265
L++L+P + YV GC WIE +++++FV
Sbjct: 625 NLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFV 684
Query: 266 ---SNEELTSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALG 307
S+ + ++S L + E M++ G+V + S ++ A+A G
Sbjct: 685 AGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFG 744
Query: 308 LISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+++ G RV K++ +C H A +F+S I++RE++++D FH FK+G CSC D +
Sbjct: 745 ILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 803
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S ++ ++ +C+ + ++ KRGL V N L+++ SR GKID A F
Sbjct: 317 NSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIF 376
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALK 155
+++ ++W +I+ V H +AL L Q ++ R +LK
Sbjct: 377 GKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLK 427
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L + + + E L + L D ++I +L +C + +L G + AY
Sbjct: 181 VTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAY 240
Query: 72 MTKRG-LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K G L + VG+ L+++ C ++ F ++ W +I+ + H E
Sbjct: 241 ALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKE 300
Query: 131 ALDLF 135
AL LF
Sbjct: 301 ALLLF 305
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGL-ISHPAVGNCLININSRCGKIDDADLA 103
D+Y+ +L + + + +G Q A++ K G + V N L+N+ +CG
Sbjct: 9 DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 68
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
F E+N +SW +IS+ + AL+ F+
Sbjct: 69 FDRISERNQVSWNSLISSLCSFEKWEMALEAFR 101
Score = 38.1 bits (87), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 11 EIPWNLLLKACIKAKDYEMVHE-----LLERIQLCCGFIDSYSICDILNSCLN---PILL 62
++ WN L+ + + +EM E L E ++ S+++ ++ +C N P L
Sbjct: 77 QVSWNSLISSLCSFEKWEMALEAFRCMLDENVE-----PSSFTLVSVVTACSNLPMPEGL 131
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
+G Q AY ++G ++ + N L+ + + GK+ + + S ++ ++W ++S+
Sbjct: 132 MMGKQVHAYGLRKGELNSFII-NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSL 190
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ EAL+ ++ + T S L A
Sbjct: 191 CQNEQLLEALEYLREMVLEGVEPDEFTISSVLPA 224
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 177/373 (47%), Gaps = 55/373 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS ++ +L +C + L G + Y+ + G S V N L+++ +CG + A L F
Sbjct: 431 DSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF 490
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P K+ +SWT +I+ HG+ +EA+ F + + + +F S L A + GL+
Sbjct: 491 DMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLE 550
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ +R F M+ ++IEP EHY+ MV+ L R G + EFI+ +P IW LL
Sbjct: 551 QGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIE-TLPIAPDATIWGALLC 609
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
R + D++LA+ +++ EL+P G YV
Sbjct: 610 GCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKN 669
Query: 252 -GC-WIEIQNKIYEFVSNEEL----TSEVSDKLAEIEENMKELGF-------VLNRSLYQ 298
GC WIEI+ K+ FVS + + L ++ MKE G ++N Q
Sbjct: 670 PGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQ 729
Query: 299 TKMK--------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
+M A+A GL++ P RV K++ +CG H +FMS RE+V++DP
Sbjct: 730 KEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDPN 789
Query: 351 SFHHFKDGKCSCK 363
FHHFKDG CSC+
Sbjct: 790 RFHHFKDGYCSCR 802
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 3/160 (1%)
Query: 2 KLCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL 61
KLC DV I WN ++ + E + +++ +D +I +L C N
Sbjct: 210 KLCD--RDV-ISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGT 266
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L++G + K N L+++ S+CG +D A F+ E+N +SWT +I+
Sbjct: 267 LSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 326
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
G A+ L + + ++ S L A A G
Sbjct: 327 YTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSG 366
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 53/108 (49%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + + +LL++++ +D +I IL++C L+ G Y
Sbjct: 318 VSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY 377
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
+ + S+ V N L+++ ++CG ++ A+ F + K+ +SW +I
Sbjct: 378 IKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI 425
>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
Length = 816
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 111/358 (31%), Positives = 170/358 (47%), Gaps = 54/358 (15%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G +A + K L V CL+++ +CGK+ DA F P ++S+SW IIS
Sbjct: 460 LKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISC 519
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
HG+ +A+ LFK+ Q + TF S L A + GLV E F M+E Y I P
Sbjct: 520 HGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRP 579
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
S +HY MV+ GRAG E+ F+K + P + +W LL + R+H +++L + D
Sbjct: 580 SLKHYGCMVDLFGRAGHLEKAFNFVKNM-PVRPDVSVWGALLGACRIHENVELVRTVSDH 638
Query: 242 LLELDP---GMYV---------GCW-----------------------IEIQNKIYEFVS 266
LL+++ G YV G W IE+ KI F +
Sbjct: 639 LLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYT 698
Query: 267 NEEL---TSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGL 308
+ E+ +L + MK +G+V + + ++ A+A G+
Sbjct: 699 GNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVEDDEKENILTSHSERLAMAFGI 758
Query: 309 ISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
IS P ++ K++ +CG H+A +F+S I ERE++V+D FHHFKDG CSC D +
Sbjct: 759 ISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRDSNRFHHFKDGVCSCGDYW 816
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 69 QAYMTKRGLISHP-AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
++T+R H A+GN +I++ ++ G ID A F+ P K+ +SW +I+ +G
Sbjct: 364 HGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGL 423
Query: 128 PSEALDLFKDKQWRYTSM-NPTTFRSALKAYALMGLVGEAYR 168
+EA+D++ ++ ++ N T+ S L A++ +G + + +
Sbjct: 424 ANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMK 465
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 4/137 (2%)
Query: 4 CSLISDVEI----PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP 59
C+L ++ I WN ++ E+ + ++ +DS +I +L C+
Sbjct: 194 CNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQL 253
Query: 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
+ G Y K GL V N LIN+ ++ G++ A+ F ++ +SW ++
Sbjct: 254 DDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLL 313
Query: 120 SARVNHGHPSEALDLFK 136
+A + P AL ++
Sbjct: 314 AAFEQNKKPVIALGVYN 330
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 6/143 (4%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGTQAQAY 71
WN ++ A + + + L F+ D Y+ ++ +C N L+ G +
Sbjct: 109 WNSMISAYARIGHFHAAVDCFNEF-LSTSFLQSDHYTFPPVIRACGN---LDDGRKVHCL 164
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + I+ SR G + A F + ++ +W +IS +G +EA
Sbjct: 165 VLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEA 224
Query: 132 LDLFKDKQWRYTSMNPTTFRSAL 154
L++F + +++ SM+ T S L
Sbjct: 225 LEVFDEMRFKSVSMDSVTISSLL 247
>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
Length = 830
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 184/376 (48%), Gaps = 60/376 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S +I +L++C L G AY+ +RG +V N L+ + +CG ++ F
Sbjct: 457 NSITIVSVLHACAGVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIF 516
Query: 105 K-STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
+N +SW +IS HG E+L +F++ S N TF S L A + +GLV
Sbjct: 517 NWIGRRRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLV 576
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKG--IVPGKLCPLIWRT 221
+ +LF SM E Y++ P EHY+ MV+ LGRAG +E +E I+ I P P +W +
Sbjct: 577 EQGKKLFESMVE-YNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPS---PQVWGS 632
Query: 222 LLLSSRVHGDMKLAKYALDKLLELDP---GMYV--------------------------- 251
LL + R+HG ++ A+ A L +L+P G YV
Sbjct: 633 LLGACRIHGHVEYAEMACSHLFDLEPRNAGNYVLLADIYARAKLQNQVDVLKELLEEHAL 692
Query: 252 ----GC-WIEIQNKIYEFVSNEELTSEVSDKLAEIEE---NMKELGFVLN-RS------- 295
GC WIE++ K+Y FVS + +V + A I E MK G+V + RS
Sbjct: 693 EKVPGCSWIEVKKKLYSFVSVDNKNPQVEELQALIGEFVTQMKNEGYVPDTRSVLYDIEE 752
Query: 296 -------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
L ++ AVA GLI G R+ K++ +C HS +F+S +RE+VV+D
Sbjct: 753 EEKERILLGHSEKLAVAFGLIKTGSGEAIRITKNLRLCEDCHSVTKFISKFTDREIVVRD 812
Query: 349 PGSFHHFKDGKCSCKD 364
FHHF++G CSC+D
Sbjct: 813 VNRFHHFRNGVCSCRD 828
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQ---- 69
WN +LKA A E L + +DSYS L +C+ ++ A+
Sbjct: 318 WNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAASASHLPASARVREM 377
Query: 70 -AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A+ +RG H V LI+ ++ G + A+ F S P++N +SW+ +I + P
Sbjct: 378 HAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERP 437
Query: 129 SEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGE 165
+A+ +F++ + P T S L A A + +G+
Sbjct: 438 GDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQ 476
>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Brachypodium distachyon]
Length = 642
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 111/411 (27%), Positives = 198/411 (48%), Gaps = 62/411 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ ++ D EL R++ + ++ +L +C ++L VG Q A+
Sbjct: 238 VVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVHAH 297
Query: 72 MTK--RGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ K R LI H N L+++ +CG + DAD F +++ +SW+ +IS +G
Sbjct: 298 VLKYDRDLILH----NALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSV 353
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
EAL +F + + N T L A + GLV + + F SM++++ I+P EH + M
Sbjct: 354 EALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPEREHCNCM 413
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
V+ LGRAG +E ++FI G + + +IWRTLL + R+H + LA YA ++L+L+P
Sbjct: 414 VDLLGRAGKLDEAMKFI-GEMKFEPDSVIWRTLLGACRMHKNATLASYAATEILKLEPED 472
Query: 248 --------GMYVG-------------------------CWIEIQNKIYEFVSNEELTSEV 274
+Y WIE+ ++ F++ EL+
Sbjct: 473 QGARILLSNIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKLVHVFIAG-ELSHPC 531
Query: 275 SDKLAE----IEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGM 315
SD++ + + K+LG+V Y ++ A+A G ++ G
Sbjct: 532 SDRIVQELNRLIRRAKDLGYVPQTEFVLQDLGTEQKEDLLKYHSEKLAIAFGTMNSMEGK 591
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P R++K++ +CG H+ + +S + ++++DP FHHF+ G CSC D +
Sbjct: 592 PVRIMKNLRICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQHGVCSCGDYW 642
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH-GHPSEALDLFKDKQWR 141
V N L+++ ++ G +DDA F P++N +SWT +++A N G EAL + +
Sbjct: 109 VSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRD 168
Query: 142 YTSMNPTTFRSALKAYALMGLVGEAY 167
+ N TF S L A G++ +
Sbjct: 169 GVAANSYTFSSVLGACGTPGVLAAMH 194
>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 179/373 (47%), Gaps = 55/373 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS ++ IL +C + L G + Y+ + G S V N L+++ +CG + A L F
Sbjct: 431 DSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF 490
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P K+ +SWT +I+ HG+ +EA+ F + + + +F S L A + GL+
Sbjct: 491 DMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLE 550
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ +R F M+ ++IEP EHY+ MV+ L R G + +FI+ +P IW LL
Sbjct: 551 QGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIE-TLPIAPDATIWGALLC 609
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
R++ D++LA+ +++ EL+P G YV
Sbjct: 610 GCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKN 669
Query: 252 -GC-WIEIQNKIYEFVSNEELTSEVSDK----LAEIEENMKELGF-------VLNRSLYQ 298
GC WIEI+ ++ FVS + S K L ++ MKE G+ ++N Q
Sbjct: 670 PGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQ 729
Query: 299 TKMK--------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
+M A+A GL++ P RV K++ +CG H +FMS RE+V++D
Sbjct: 730 KEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSN 789
Query: 351 SFHHFKDGKCSCK 363
FHHFKDG CSC+
Sbjct: 790 RFHHFKDGYCSCR 802
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 3/160 (1%)
Query: 2 KLCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL 61
KLC DV I WN ++ + E + +++ +D +I +L C N
Sbjct: 210 KLCD--RDV-ISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGT 266
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L++G + K N L+++ S+CG +D A F+ E+N +SWT +I+
Sbjct: 267 LSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 326
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
G A+ L + + ++ S L A A G
Sbjct: 327 YTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSG 366
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D +I IL++C L+ G Y+ + S+ V N L+++ ++CG ++ A+
Sbjct: 350 LDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSV 409
Query: 104 FKSTPEKNSLSWTFII 119
F + K+ +SW ++
Sbjct: 410 FSTMVVKDIISWNTMV 425
>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 837
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 116/426 (27%), Positives = 193/426 (45%), Gaps = 67/426 (15%)
Query: 1 LKLCSLISDV-EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP 59
LK+ S + D E+ WN ++ ++ E + +Q + +L +C +
Sbjct: 419 LKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAST 478
Query: 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
+ Q + K + +GN LI+ ++CG I DA F+ E++ +SW II
Sbjct: 479 ASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAII 538
Query: 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179
S HG ++AL+LF N TF + L + GLV LF SM + I
Sbjct: 539 SGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGI 598
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239
+PS EHY+ +V LGRAG + L+FI G +P ++WR LL S +H ++ L +++
Sbjct: 599 KPSMEHYTCIVRLLGRAGRLNDALQFI-GDIPSAPSAMVWRALLSSCIIHKNVALGRFSA 657
Query: 240 DKLLELDP----------GMYVGC-------------------------WIEIQNKIYEF 264
+K+LE++P MY W+EI+ +I+ F
Sbjct: 658 EKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAF 717
Query: 265 -----------------------VSNEELTSEVSDKLAEIEENMKELGFVLNRSLY-QTK 300
S E +++ L ++++ K R L+ ++
Sbjct: 718 SVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQK------TRMLWVHSE 771
Query: 301 MKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKC 360
A+A GL+ P G P R++K++ C H+A +S I++RE++V+D FHHF+DGKC
Sbjct: 772 RLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKC 831
Query: 361 SCKDAY 366
SC D +
Sbjct: 832 SCGDYW 837
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 94/220 (42%), Gaps = 3/220 (1%)
Query: 23 KAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA 82
++ E EL R+ + YS+ +L +C N + L+ G Q + K G S
Sbjct: 341 QSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLF 400
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
VGN L++ ++C +D + F S + N +SW I+ G EAL +F + Q
Sbjct: 401 VGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQ 460
Query: 143 TSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV 202
T+ S L+A A + A ++ S+E+ + S +++ + G +
Sbjct: 461 MPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNS-LIDTYAKCGYIRDA 519
Query: 203 LEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
L+ + ++ + + W ++ +HG A D++
Sbjct: 520 LKVFQHLMERDI--ISWNAIISGYALHGQAADALELFDRM 557
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 15/146 (10%)
Query: 3 LCSLISDVEIPWNLLLK----------ACIKAKD-YEMVHELLERIQLCCGFIDSYSICD 51
LCSL+SD E +N +++ +C D E + ++++ + +++
Sbjct: 209 LCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTS 268
Query: 52 ILNS--CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE 109
+L + CL ++L G A T + P VG L+++ ++CG I DA LAF+ P
Sbjct: 269 VLKAAVCLPSVVLGKGIHGCAIKTLND--TEPHVGGALLDMYAKCGDIKDARLAFEMIPY 326
Query: 110 KNSLSWTFIISARVNHGHPSEALDLF 135
+ + +F+IS +A +LF
Sbjct: 327 DDVILLSFMISRYAQSNQNEQAFELF 352
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 2/125 (1%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV--GNCLININSRCGKIDDAD 101
+DS++ L C+ G ++ +RG + + N L+N+ + G + A
Sbjct: 57 VDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASAR 116
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
F PE+N +S+ ++ A G A LF+ +W +N + LK M
Sbjct: 117 RLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMD 176
Query: 162 LVGEA 166
G A
Sbjct: 177 AAGLA 181
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 58/140 (41%)
Query: 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRG 76
L++A + D+E L R++ ++ + + +L + + + K G
Sbjct: 133 LVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLG 192
Query: 77 LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
+ VG+ LI+ S C + DA+ F K+++ WT ++S + P A +F
Sbjct: 193 HDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFS 252
Query: 137 DKQWRYTSMNPTTFRSALKA 156
+ NP S LKA
Sbjct: 253 KMRVSGCKPNPFALTSVLKA 272
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 197/408 (48%), Gaps = 56/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN L+ A + + +QL ++ ++ L++C L +G +
Sbjct: 330 VAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHS 389
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ K G+ + V + LI++ S+CG ++ + F S +++ W+ +I HG +E
Sbjct: 390 YIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNE 449
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+D+F Q N TF + A + GLV EA LF ME Y I P E+HY+ +V
Sbjct: 450 AVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIV 509
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGR+G E+ ++FI+ + P +W LL + ++H ++ LA+ A +LLEL+P
Sbjct: 510 DVLGRSGYLEKAVKFIEAM-PIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRND 568
Query: 248 GMYV---------GCW-----------------------IEIQNKIYEFVSNEE---LTS 272
G +V G W IEI I+EF+S + ++
Sbjct: 569 GAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSE 628
Query: 273 EVSDKLAEIEENMKELGFVLNRS-----LYQTKMK-----------AVALGLISFPHGMP 316
+V KL E+ E +K G+ S + + +MK A+ GLIS
Sbjct: 629 KVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKV 688
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
RVIK++ +CG HS + +S + +RE++V+D FHHF++G+CSC D
Sbjct: 689 IRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCND 736
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 98/243 (40%), Gaps = 10/243 (4%)
Query: 11 EIP------WNLLLKACIKAKDYEM-VHELLERIQLCCGFIDSYSICDILNSCLNPILLN 63
EIP WN L++A D + + L+ + + + Y+ ++ + L+
Sbjct: 89 EIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLS 148
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
+G K + S V N LI+ CG +D A F + EK+ +SW +I+ V
Sbjct: 149 LGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFV 208
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
G P +AL+LFK + + T L A A + + E R S E + +
Sbjct: 209 QKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNL-EFGRQVCSYIEENRVNVNL 267
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
+ M++ + G E+ + + W T+L + D + A+ L+ +
Sbjct: 268 TLANAMLDMYTKCGSIEDAKRLFDAMEEKD--NVTWTTMLDGYAISEDYEAAREVLNSMP 325
Query: 244 ELD 246
+ D
Sbjct: 326 QKD 328
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/251 (19%), Positives = 103/251 (41%), Gaps = 35/251 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ ++ + EL ++++ ++ +L++C L G Q +Y
Sbjct: 198 VSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSY 257
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAF--------------------------- 104
+ + + + + N ++++ ++CG I+DA F
Sbjct: 258 IEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAA 317
Query: 105 ----KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYT-SMNPTTFRSALKAYAL 159
S P+K+ ++W +ISA +G P+EAL +F + Q + +N T S L A A
Sbjct: 318 REVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQ 377
Query: 160 MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIW 219
+G + E R S + + I + S ++ + G E+ E + K +W
Sbjct: 378 VGAL-ELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSV--EKRDVFVW 434
Query: 220 RTLLLSSRVHG 230
++ +HG
Sbjct: 435 SAMIGGLAMHG 445
>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
Length = 667
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 179/373 (47%), Gaps = 55/373 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS ++ IL +C + L G + Y+ + G S V N L+++ +CG + A L F
Sbjct: 293 DSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF 352
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P K+ +SWT +I+ HG+ +EA+ F + + + +F S L A + GL+
Sbjct: 353 DMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLE 412
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ +R F M+ ++IEP EHY+ MV+ L R G + +FI+ +P IW LL
Sbjct: 413 QGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIE-TLPIAPDATIWGALLC 471
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
R++ D++LA+ +++ EL+P G YV
Sbjct: 472 GCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKN 531
Query: 252 -GC-WIEIQNKIYEFVSNEELTSEVSDK----LAEIEENMKELGF-------VLNRSLYQ 298
GC WIEI+ ++ FVS + S K L ++ MKE G+ ++N Q
Sbjct: 532 PGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQ 591
Query: 299 TKMK--------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
+M A+A GL++ P RV K++ +CG H +FMS RE+V++D
Sbjct: 592 KEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSN 651
Query: 351 SFHHFKDGKCSCK 363
FHHFKDG CSC+
Sbjct: 652 RFHHFKDGYCSCR 664
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 3/160 (1%)
Query: 2 KLCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL 61
KLC DV I WN ++ + E + +++ +D +I +L C
Sbjct: 72 KLCD--RDV-ISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGT 128
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L++G + K N L+++ S+CG +D A F+ E+N +SWT +I+
Sbjct: 129 LSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 188
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
G A+ L + + ++ S L A A G
Sbjct: 189 YTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSG 228
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D +I IL++C L+ G Y+ + S+ V N L+++ ++CG ++ A+
Sbjct: 212 LDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSV 271
Query: 104 FKSTPEKNSLSWTFII 119
F + K+ +SW ++
Sbjct: 272 FSTMVVKDIISWNTMV 287
>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 740
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 175/375 (46%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y++ +++C N L G+Q GLI + V N L+ + +CG IDD+ F
Sbjct: 367 DHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLF 426
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++ +SWT ++SA G EA+ LF + T + A + GLV
Sbjct: 427 NEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVE 486
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ R F M Y I PS HYS M++ R+G EE + FI G+ P + + W TLL
Sbjct: 487 KGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGM-PFRPDAIGWTTLLS 545
Query: 225 SSRVHGDMKLAKYALDKLLELDPGMYVG-------------------------------- 252
+ R G++++ K+A + L+ELDP G
Sbjct: 546 ACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKE 605
Query: 253 ---CWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSLYQ------TK 300
WI+ + K++ F +++E + ++ KL E+ + + + G+ + S K
Sbjct: 606 PGQSWIKWKGKLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDTSFVHHDVEEAVK 665
Query: 301 MK---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+K A+A GLI P G+P RV K++ +C H+A + +S++ RE++V+D
Sbjct: 666 IKMLNCHSERLAIAFGLIFVPSGLPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVR 725
Query: 352 FHHFKDGKCSCKDAY 366
FH FKDG CSC D +
Sbjct: 726 FHRFKDGTCSCGDFW 740
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 67/158 (42%)
Query: 1 LKLCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
L+L + + W+ ++K + + E +++ +D Y +L +C
Sbjct: 222 LQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLG 281
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
+N G Q A + + L H VG+ LI++ +C + A F +KN +SWT ++
Sbjct: 282 AINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVV 341
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
G EA+ +F D Q + T A+ A A
Sbjct: 342 GYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACA 379
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 94 CGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSA 153
CG I+DA F+ EK+S+SW+ +I +G EA++ F++ + M+ F S
Sbjct: 215 CGMIEDALQLFRGM-EKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSV 273
Query: 154 LKAYALMGLVGEAYRL 169
L A +G + + ++
Sbjct: 274 LPACGGLGAINDGRQI 289
>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 624
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/375 (28%), Positives = 179/375 (47%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ ++ +C +N AY+ G +G +I++ ++CG ++ A F
Sbjct: 251 DKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIF 310
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+N ++W+ +I+A HG +AL+LF N TF S L A + GL+
Sbjct: 311 DRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIE 370
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E R F SM + Y + P +HY+ MV+ LGRAG +E LE I+G+ P + ++W LL
Sbjct: 371 EGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGM-PVEKDEVLWGALLG 429
Query: 225 SSRVHGDMKLAKYALDKLLELD---PGMYV------------------------------ 251
+ R+H + LA+ LL+L PG YV
Sbjct: 430 ACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKI 489
Query: 252 --GCWIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGF--VLNRSLY------- 297
WIE+ K+Y+F ++ ++E+ L + E ++ G+ N LY
Sbjct: 490 PGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDVLYDVDEEVK 549
Query: 298 ------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
++ A+A GL+ P G P R+ K++ +CG H+ C+F+S I ++ ++V+D
Sbjct: 550 QGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKFVSLIEQKTIIVRDAKR 609
Query: 352 FHHFKDGKCSCKDAY 366
FHHFK+G CSC+D +
Sbjct: 610 FHHFKEGVCSCRDYW 624
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 64/153 (41%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W++++ K ++ + + +D YS ++ +C + L G
Sbjct: 119 WSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITL 178
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K GL V L+++ +RC ++DA F +++ +WT +I A G P E+L
Sbjct: 179 KCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLV 238
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
F + + + + + A A +G + +A
Sbjct: 239 FFDRMRNQGIVPDKVALVTVVYACAKLGAMNKA 271
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 177/375 (47%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y++ +L++C L +G + + + +P +G LI++ ++CG + A F
Sbjct: 313 DCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVF 372
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
K EK+ + W IIS +G+ + LF + + TF L GLV
Sbjct: 373 KGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVD 432
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E R F SM + + PS EHY MV+ LGRAG+ +E + I+ + P + ++W LL
Sbjct: 433 EGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNM-PMEANAIVWGALLG 491
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
+ R+H D +LA+ AL +L+EL+P G YV
Sbjct: 492 ACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKP 551
Query: 252 -GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSLY--------- 297
GC WIE+ ++EF+ ++ L+ ++ KL E+ + MK G+V
Sbjct: 552 PGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEK 611
Query: 298 ------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
++ A+A GLIS RV+K++ +CG H A + +S+I RE+ V+D
Sbjct: 612 EHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNR 671
Query: 352 FHHFKDGKCSCKDAY 366
FH F++G CSC D +
Sbjct: 672 FHCFREGSCSCNDYW 686
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 69/150 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ I + ++ R+ DS++I +L++C LN G
Sbjct: 179 VSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKC 238
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G++ + VG L+++ ++CG ++ A F PEK+ +SW +I +G P EA
Sbjct: 239 IMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEA 298
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+DLF Q + T L A A +G
Sbjct: 299 IDLFLQMQRENVKPDCYTVVGVLSACARLG 328
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 6/139 (4%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN +++ + ++ E ++ ++++ +L +C + L +G + +
Sbjct: 80 WNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVV 139
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G V L+ + ++CG ++DA F P+KN +SWT IIS + G EA+D
Sbjct: 140 KGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAID 199
Query: 134 LFKDKQWRYTSMN--PTTF 150
+F+ R MN P +F
Sbjct: 200 MFR----RLLEMNLAPDSF 214
>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 189/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ + ++ + YE L + D + + ++ +C + G Q A
Sbjct: 232 VTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNAL 291
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
++K G S+ V + LI++ ++CG I+++ F+ ++N + W +IS H E
Sbjct: 292 LSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEV 351
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF+ Q S N TF S L A MGLV + + F M + +H+ P+ HYS MV+
Sbjct: 352 MILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVD 411
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
L RAG E + I + P +W +LL S R HG+++LA+ A KL +++P
Sbjct: 412 TLSRAGQIFEAYDLISKL-PFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSG 470
Query: 248 ------GMYVG-------------------------CWIEIQNKIYEFV---SNEELTSE 273
MY WIEI++K++ F+ N E
Sbjct: 471 NYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVE 530
Query: 274 VSDKLAEIEENMKELGF---------VLNRSLYQTKMK------AVALGLISFPHGMPTR 318
+ KL E+ + +++LG+ + S+ Q ++ A +GL+ P P R
Sbjct: 531 IYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIR 590
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +CG HS + S R+++V+D FHHFK+G CSC D +
Sbjct: 591 IMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%)
Query: 51 DILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK 110
+IL C LL G A + GL + N LIN+ S+CG +D A F P +
Sbjct: 69 EILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSR 128
Query: 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+ +SW +I + +G +EALDL Q T + T S L A A
Sbjct: 129 SLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACA 176
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + + + +LL ++Q ++I +L +C L+ A+
Sbjct: 131 VSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAF 190
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + + V L+++ ++CG + DA F+S P+++ ++W+ + + V + +A
Sbjct: 191 AIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQA 250
Query: 132 LDLFKDKQW 140
L LF+ K W
Sbjct: 251 LALFR-KAW 258
>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Vitis vinifera]
Length = 719
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 123/411 (29%), Positives = 195/411 (47%), Gaps = 59/411 (14%)
Query: 14 WNLLLKACIKAKDY-EMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN ++ + +++ E E ++Q + S ++++C N + G Q +
Sbjct: 310 WNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLA 369
Query: 73 TKRGLISHP-AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + S+ +V N LI + S+CG + DA F E N++S +I+ HG E+
Sbjct: 370 LKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMES 429
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF+ R + TF S L A A G V E + F M+E ++IEP EHYS M++
Sbjct: 430 LHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMID 489
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
LGRAG E I + P + W +LL + R HG+++LA A +++L+L+P
Sbjct: 490 LLGRAGKLSEAENLIARM-PFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAA 548
Query: 248 ------GMYV------------------------GC-WIEIQNKIYEFV---SNEELTSE 273
MY GC WIE++ +I+ FV S+ + E
Sbjct: 549 PYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKE 608
Query: 274 VSDKLAEIEENMKELGFVLN------------------RSLYQTKMKAVALGLISFPHGM 315
+ + L E+ MK G+V + R + ++ AVA GLIS G
Sbjct: 609 IYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGE 668
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P V+K++ +CG H+A +F+S I RE+ V+D FH FK+G+CSC D +
Sbjct: 669 PVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D +++ ++ +C + + L +G Q + G S+ +V N L+ + G +DDA
Sbjct: 138 MDGFTLSAVITACCDDVGL-IG-QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRV 195
Query: 104 FKSTPE-KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
F ++ +SW +I A H S+AL LF++ R +++ T S L A+ +
Sbjct: 196 FYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCL 253
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L +C+ L+ G + K + N I + S+CG++ A AF+ + N
Sbjct: 14 LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
S+ II+A P A LF + + ++ + + AYA G A LF
Sbjct: 74 VFSFNAIIAAYAKESRPLIAHQLFD----QIPEPDLVSYNTLISAYADCGETAPALGLFS 129
Query: 172 SMEEV 176
M E+
Sbjct: 130 GMREM 134
>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
Length = 824
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/368 (30%), Positives = 171/368 (46%), Gaps = 54/368 (14%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L +C L G + + K GL VG L ++ +CG++DDA F P N
Sbjct: 458 VLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVN 517
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
S+ W +I+ HGH +A+ LFK+ + TF + L A + GLV E F
Sbjct: 518 SVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFE 577
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231
M+ Y I PS +HY MV+ GRAG E L FIK + P + IW LL + RVHG+
Sbjct: 578 MMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSM-PLQPDASIWGALLSACRVHGN 636
Query: 232 MKLAKYALDKLLELDP----------GMY--VGCW-----------------------IE 256
+ L K A + L E++P MY G W +E
Sbjct: 637 VDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSME 696
Query: 257 IQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS---------------LYQ 298
+ NK+ F + + + E+ +L + E +K +G+V + +
Sbjct: 697 VDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGYVPDHRFVLQDVEDDEKEHILMSH 756
Query: 299 TKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDG 358
++ A+A LI+ P R+ K++ +CG HS +F+S I ERE++V+D FHHFK+G
Sbjct: 757 SERLAMAFALITTPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNG 816
Query: 359 KCSCKDAY 366
CSC D +
Sbjct: 817 VCSCGDYW 824
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 103/247 (41%), Gaps = 28/247 (11%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLN-----PILLNVG- 65
I WN ++KA YE+ + L I L + I CL IL +G
Sbjct: 314 ISWNSIIKA------YELNEQPLRAILL----FQEMRLSRIQPDCLTLISLASILSQLGE 363
Query: 66 ----TQAQAYMTKRG-LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
Q + ++G + +GN ++ + ++ G +D A F P K+ +SW IIS
Sbjct: 364 IRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIIS 423
Query: 121 ARVNHGHPSEALDLFK--DKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS-MEEVY 177
+G SEA++++ +++ S N T+ S L A + G + + +L ++
Sbjct: 424 GYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGL 483
Query: 178 HIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKY 237
+++ + + + G+ G ++ L I P W TL+ HG + A
Sbjct: 484 YLDVFVG--TSLADMYGKCGRLDDALSLFYQIPRVNSVP--WNTLIACHGFHGHGEKAVM 539
Query: 238 ALDKLLE 244
++L+
Sbjct: 540 LFKEMLD 546
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+DS ++ +L++C N G +Y K GL S V N LI++ + G + D
Sbjct: 245 MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKV 304
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP 147
F ++ +SW II A + P A+ LF++ R + + P
Sbjct: 305 FDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEM--RLSRIQP 346
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 4/122 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSY-SICDILNSCLNPILLNVGTQAQAYM 72
WNL++ +A V L G Y + +L +C N + G +
Sbjct: 120 WNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRN---VTDGNKIHCLA 176
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K G + V LI++ R G + +A + F P ++ SW +IS G+ EAL
Sbjct: 177 LKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEAL 236
Query: 133 DL 134
L
Sbjct: 237 TL 238
>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
Length = 890
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/419 (26%), Positives = 201/419 (47%), Gaps = 64/419 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-----------DSYSICDILNSCLNPI 60
+ WN ++ + ++ +E LL ++Q + +S ++ IL SC
Sbjct: 472 VTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALS 531
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L G + AY K L + AVG+ L+++ ++CG + + F P+KN ++W II
Sbjct: 532 ALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIM 591
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
A HG+ EA+DL + + N TF S A + G+V E R+F M+ Y +E
Sbjct: 592 AYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVE 651
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
PS +HY+ +V+ LGRAG +E + + + W +LL +SR+H ++++ + A
Sbjct: 652 PSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQ 711
Query: 241 KLLELDPGM---YV-------------------------------GC-WIEIQNKIYEFV 265
L++L+P + YV GC WIE +++++FV
Sbjct: 712 NLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFV 771
Query: 266 ---SNEELTSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALG 307
S+ + ++S L + E M++ G+V + S ++ A+A G
Sbjct: 772 AGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFG 831
Query: 308 LISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+++ G RV K++ +C H A +F+S I++RE++++D FH FK+G CSC D +
Sbjct: 832 ILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S ++ ++ +C+ + ++ KRGL V N L+++ SR GKID A F
Sbjct: 404 NSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIF 463
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALK 155
+++ ++W +I+ V H +AL L Q ++ R +LK
Sbjct: 464 GKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLK 514
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L + + + E L + L D ++I +L +C + +L G + AY
Sbjct: 268 VTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAY 327
Query: 72 MTKRG-LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K G L + VG+ L+++ C ++ F ++ W +I+ + H E
Sbjct: 328 ALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKE 387
Query: 131 ALDLF 135
AL LF
Sbjct: 388 ALLLF 392
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGL-ISHPAVGNCLININSRCGKIDDADLA 103
D+Y+ +L + + + +G Q A++ K G + V N L+N+ +CG
Sbjct: 96 DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 155
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
F E+N +SW +IS+ + AL+ F+
Sbjct: 156 FDRISERNQVSWNSLISSLCSFEKWEMALEAFR 188
Score = 37.7 bits (86), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 11 EIPWNLLLKACIKAKDYEMVHE-----LLERIQLCCGFIDSYSICDILNSCLN---PILL 62
++ WN L+ + + +EM E L E ++ S+++ ++ +C N P L
Sbjct: 164 QVSWNSLISSLCSFEKWEMALEAFRCMLDENVE-----PSSFTLVSVVTACSNLPMPEGL 218
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
+G Q AY ++G ++ + N L+ + + GK+ + + S ++ ++W ++S+
Sbjct: 219 MMGKQVHAYGLRKGELNSFII-NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSL 277
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ EAL+ ++ + T S L A
Sbjct: 278 CQNEQLLEALEYLREMVLEGVEPDEFTISSVLPA 311
>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g57430, chloroplastic; Flags: Precursor
gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 890
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/419 (26%), Positives = 201/419 (47%), Gaps = 64/419 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-----------DSYSICDILNSCLNPI 60
+ WN ++ + ++ +E LL ++Q + +S ++ IL SC
Sbjct: 472 VTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALS 531
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L G + AY K L + AVG+ L+++ ++CG + + F P+KN ++W II
Sbjct: 532 ALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIM 591
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
A HG+ EA+DL + + N TF S A + G+V E R+F M+ Y +E
Sbjct: 592 AYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVE 651
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
PS +HY+ +V+ LGRAG +E + + + W +LL +SR+H ++++ + A
Sbjct: 652 PSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQ 711
Query: 241 KLLELDPGM---YV-------------------------------GC-WIEIQNKIYEFV 265
L++L+P + YV GC WIE +++++FV
Sbjct: 712 NLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFV 771
Query: 266 ---SNEELTSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALG 307
S+ + ++S L + E M++ G+V + S ++ A+A G
Sbjct: 772 AGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFG 831
Query: 308 LISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+++ G RV K++ +C H A +F+S I++RE++++D FH FK+G CSC D +
Sbjct: 832 ILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S ++ ++ +C+ + ++ KRGL V N L+++ SR GKID A F
Sbjct: 404 NSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIF 463
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALK 155
+++ ++W +I+ V H +AL L Q ++ R +LK
Sbjct: 464 GKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLK 514
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L + + + E L + L D ++I +L +C + +L G + AY
Sbjct: 268 VTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAY 327
Query: 72 MTKRG-LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K G L + VG+ L+++ C ++ F ++ W +I+ + H E
Sbjct: 328 ALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKE 387
Query: 131 ALDLF 135
AL LF
Sbjct: 388 ALLLF 392
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGL-ISHPAVGNCLININSRCGKIDDADLA 103
D+Y+ +L + + + +G Q A++ K G + V N L+N+ +CG
Sbjct: 96 DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 155
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
F E+N +SW +IS+ + AL+ F+
Sbjct: 156 FDRISERNQVSWNSLISSLCSFEKWEMALEAFR 188
Score = 37.7 bits (86), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 11 EIPWNLLLKACIKAKDYEMVHE-----LLERIQLCCGFIDSYSICDILNSCLN---PILL 62
++ WN L+ + + +EM E L E ++ S+++ ++ +C N P L
Sbjct: 164 QVSWNSLISSLCSFEKWEMALEAFRCMLDENVE-----PSSFTLVSVVTACSNLPMPEGL 218
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
+G Q AY ++G ++ + N L+ + + GK+ + + S ++ ++W ++S+
Sbjct: 219 MMGKQVHAYGLRKGELNSFII-NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSL 277
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ EAL+ ++ + T S L A
Sbjct: 278 CQNEQLLEALEYLREMVLEGVEPDEFTISSVLPA 311
>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
Length = 719
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 123/411 (29%), Positives = 195/411 (47%), Gaps = 59/411 (14%)
Query: 14 WNLLLKACIKAKDY-EMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN ++ + +++ E E ++Q + S ++++C N + G Q +
Sbjct: 310 WNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLA 369
Query: 73 TKRGLISHP-AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + S+ +V N LI + S+CG + DA F E N++S +I+ HG E+
Sbjct: 370 LKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMES 429
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF+ R + TF S L A A G V E + F M+E ++IEP EHYS M++
Sbjct: 430 LHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMID 489
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
LGRAG E I + P + W +LL + R HG+++LA A +++L+L+P
Sbjct: 490 LLGRAGKLSEAENLIARM-PFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAA 548
Query: 248 ------GMYV------------------------GC-WIEIQNKIYEFV---SNEELTSE 273
MY GC WIE++ +I+ FV S+ + E
Sbjct: 549 PYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKE 608
Query: 274 VSDKLAEIEENMKELGFVLN------------------RSLYQTKMKAVALGLISFPHGM 315
+ + L E+ MK G+V + R + ++ AVA GLIS G
Sbjct: 609 IYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGE 668
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P V+K++ +CG H+A +F+S I RE+ V+D FH FK+G+CSC D +
Sbjct: 669 PVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D +++ ++ +C + + L +G Q + G S+ +V N L+ + G +DDA
Sbjct: 138 MDXFTLSAVITACCDDVGL-IG-QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRV 195
Query: 104 FKSTPE-KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
F ++ +SW +I A H S+AL LF++ R +++ T S L A+ +
Sbjct: 196 FYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCL 253
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L +C+ L+ G + K + N I + S+CG++ A AF+ + N
Sbjct: 14 LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
S+ II+A P A LF + + ++ + + AYA G A LF
Sbjct: 74 VFSFNAIIAAYAKESRPLIAHQLFD----QIPEPDLVSYNTLISAYADCGETAPALGLFS 129
Query: 172 SMEEV 176
M E+
Sbjct: 130 GMREM 134
>gi|357490167|ref|XP_003615371.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355516706|gb|AES98329.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 765
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 174/375 (46%), Gaps = 53/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L+ C + L G Q A K G +S VG+ +IN+ ++CG I+ A F
Sbjct: 390 DPFTFSSVLSVCSKMMALEQGEQIHARTIKTGFLSDVVVGSSMINMYNKCGSIERASKVF 449
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ + WT +I+ HG +AL+LF+D + N TF L A G+V
Sbjct: 450 LEMSIRTMILWTTMITGFAQHGWSKQALNLFEDMKLVGIRPNLVTFVGVLSACGSAGMVN 509
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
EA+ F M++ Y I+P +HY +V+ L R G +E + IK + K IW L++
Sbjct: 510 EAFNYFEIMQKEYKIKPVMDHYVCLVDMLVRLGQVQEAFDLIKKM-DYKASEFIWSNLIV 568
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMYVGC--------------------- 253
G+++L A +KLL L P YV
Sbjct: 569 GCLSQGNLELGCDAAEKLLSLKPKDTETYKLLLNAYVSAGRYDDVSRVENIMREEKIGEL 628
Query: 254 ----WIEIQNKIYEFVSNE--ELTSEVSDKLAEIEENMKELGFVL--------------- 292
WI I++++Y F +N+ ++ S + L ++ K LG+ +
Sbjct: 629 KDWSWISIKDRVYSFQTNDKADIESSIGKSLEDLHIKAKNLGYEMLEYVEKSDKEKEKTS 688
Query: 293 NRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
+ ++Y ++ A+ GL + P+ P RV+K+ MC SH+ +++ST+ RE++VKD
Sbjct: 689 SPTIYHSEKLAITFGLENLPNSSPVRVVKNTLMCRDSHNFVKYISTLTSREIIVKDSKRL 748
Query: 353 HHFKDGKCSCKDAYG 367
H F +G+CSC + G
Sbjct: 749 HKFVNGQCSCGNIGG 763
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 4/147 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCG-FIDSYSICDILNSCLNPILLNVGTQAQA 70
+ W L+K ++ + L E + L + +Y++ LN+C + L +G Q A
Sbjct: 140 VAWTNLMKGYVQNSMPKHAIHLFEEMLLHSECYPSNYTLAIALNACTSLHSLKLGEQLHA 199
Query: 71 YMTKRGLISHPAVGNCLININSRC-GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
Y+ K + ++GN L ++ ++C GK++ AF+ EK+ +SWT ISA G
Sbjct: 200 YIIKYHVDFDTSIGNALCSLYTKCGGKLEVGLTAFRRIKEKDVISWTAAISACGEKGEAM 259
Query: 130 EALDLFKDKQWRYTSMNPT--TFRSAL 154
+ + +F + + P T SAL
Sbjct: 260 KGVRVFVEMLLDEVQVQPNEYTLTSAL 286
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 19/165 (11%)
Query: 12 IPWNLLLKACIKAKDYE-----MVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
I W + AC + + V LL+ +Q+ + Y++ L+ C L +G
Sbjct: 243 ISWTAAISACGEKGEAMKGVRVFVEMLLDEVQVQ---PNEYTLTSALSQCCEVKCLELGI 299
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q A TK G S+ V N L+ + +CG I +A FK + N ++W +I+
Sbjct: 300 QVHALCTKLGYESNLRVRNSLLYLYLKCGCIVEAQRLFKGMNDVNLVTWNAMIAGHAQMM 359
Query: 127 HPS-----------EALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
S EAL+LF +P TF S L + M
Sbjct: 360 ELSKDNLSAYQKGIEALNLFSKLNRSGMKPDPFTFSSVLSVCSKM 404
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 45/94 (47%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+DS +L CL + ++ K G P + + L+ + ++CG+++ A
Sbjct: 71 VDSSFYPPLLQQCLENCSFSSTQIIHCHIVKTGSHEDPFLSSFLVTVYAKCGRMECAQQV 130
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
F +N+++WT ++ V + P A+ LF++
Sbjct: 131 FDHMNRRNAVAWTNLMKGYVQNSMPKHAIHLFEE 164
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 194/412 (47%), Gaps = 61/412 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYS-ICDILNSCLNPILLNVGTQAQA 70
+ WN ++ + K + +L E + L +Y+ I +++ + L G +
Sbjct: 274 VTWNSMITGYERNKQFTKALKLFE-VMLREDISPNYTTILGAVSAASGMVSLGTGRWVHS 332
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ K G + +G LI + S+CG + A F+S P+K WT +I HG +
Sbjct: 333 YIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQ 392
Query: 131 ALDLFKDKQWRYTSMNP--TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
L+LF D+ R T + P TF L A + G +A+R F M Y I+PS EHY
Sbjct: 393 TLELF-DEMCR-TGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGC 450
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP- 247
+++ L RAG EE + I+ + P K +IW +LL SR HG++++ +YA L++L P
Sbjct: 451 LIDVLCRAGHLEEAKDTIERM-PIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPD 509
Query: 248 --GMYV---------GCW-----------------------IEIQNKIYEFVSNEE---L 270
G YV G W IE Q I+EF+ ++
Sbjct: 510 TTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQ 569
Query: 271 TSEVSDKLAEIEENMKELGFVLNRSLY----------------QTKMKAVALGLISFPHG 314
T E+ KL E+++ + G + + + ++ A+A GL++ HG
Sbjct: 570 TEEIYIKLCEMKKKLNVAGHIPDTTQVLLCLEEDNEKEAELETHSERLAIAFGLLNIKHG 629
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P R+IK++ +C H+ + +S I RE++++D FHHFK G CSCKD +
Sbjct: 630 SPIRIIKNLRICNDCHAVTKLLSHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 91/237 (38%), Gaps = 43/237 (18%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQA 70
+ WNLL+K I+ + L +L C F+ DS+++ +L C L G Q
Sbjct: 81 VSWNLLIKCYIENQRSNDAIALF--CKLLCDFVPDSFTLPCVLKGCARLGALQEGKQIHG 138
Query: 71 YMTKRGLISHPAVGNCLININSRCGKI----------DDADLA----------------- 103
+ K G V + L+++ S+CG+I +D D+
Sbjct: 139 LVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIEL 198
Query: 104 ----FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159
F+ PEK+S SWT +I G A D+F R N ++ + + Y
Sbjct: 199 ALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFD----RMPIRNSVSWNAMINGYMK 254
Query: 160 MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP 216
G A LF M E + ++ M+ R F + L+ + ++ + P
Sbjct: 255 AGDSNTAKELFDQMPERSLVT-----WNSMITGYERNKQFTKALKLFEVMLREDISP 306
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 87/219 (39%), Gaps = 11/219 (5%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ + + E+ E+ E + DS+S +++ L
Sbjct: 181 VSWNSLIDGYARCGEIELALEMFEEMPE----KDSFSWTILIDGLSKSGKLEAARDVFDR 236
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M R +S N +IN + G + A F PE++ ++W +I+ + ++A
Sbjct: 237 MPIRNSVS----WNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKA 292
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF+ S N TT A+ A + M +G R S + ++++E
Sbjct: 293 LKLFEVMLREDISPNYTTILGAVSAASGMVSLGTG-RWVHSYIVKSGFKTDGVLGTLLIE 351
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
+ G + L + I KL W ++++ +HG
Sbjct: 352 MYSKCGSVKSALRVFRSIPKKKLGH--WTSVIVGLGMHG 388
>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
[Cucumis sativus]
Length = 1037
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 197/409 (48%), Gaps = 56/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN L+ ++ +E ++ R+ ++ ++ +++ + + G Q +
Sbjct: 631 ISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSM 690
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G S V N LI++ ++ G I DA F E+N +SW +I+ HG EA
Sbjct: 691 VLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEA 750
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF++ + N TF L A + +GLV E F SM +++ + P EHY +V+
Sbjct: 751 LRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVD 810
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG + +E+IK + P +IWRTLL + +H ++++ + A LLEL+P
Sbjct: 811 LLGRAGQLDRAMEYIKEM-PIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSA 869
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEE---LTSE 273
YV WIE++N ++ F + ++ LT++
Sbjct: 870 TYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQ 929
Query: 274 VSDKLAEIEENMKELGFV------LNRS----------LYQTKMKAVALGLISFPHGMPT 317
+ + + + E+G+V LN S ++ K+ A+A GL+S + +P
Sbjct: 930 IYEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKL-AIAFGLLSLGNNIPI 988
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV+K++ +C H+ +++S I R ++V+D FHHF G CSCKD +
Sbjct: 989 RVMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 99/228 (43%), Gaps = 40/228 (17%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN++L A + + E+ ++Q+ + ++ IL +C + L +G Q +
Sbjct: 429 VLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTH 488
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + V + LI++ ++ G++ A + PE + +SWT +I+ V H SEA
Sbjct: 489 VIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEA 548
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA----------------------------------- 156
L LF++ ++R + F SA+ A
Sbjct: 549 LQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISL 608
Query: 157 YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
YA G + EAY F + + +I ++ +V L ++G FEE L+
Sbjct: 609 YARCGRIQEAYLAFEKIGDKNNIS-----WNSLVSGLAQSGYFEEALQ 651
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 62/130 (47%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
L D + W ++ ++ + +L E ++ D+ +++C L G
Sbjct: 524 LPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQG 583
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Q A G + ++ N LI++ +RCG+I +A LAF+ +KN++SW ++S
Sbjct: 584 QQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQS 643
Query: 126 GHPSEALDLF 135
G+ EAL +F
Sbjct: 644 GYFEEALQVF 653
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 83/370 (22%), Positives = 135/370 (36%), Gaps = 61/370 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLN-PILLNVGTQAQ 69
WN ++ + K V L R+ L G + Y+ +L +C+ I N Q
Sbjct: 125 FSWNKMIHVFVAQKSNFQVFCLFRRM-LAEGITPNGYTFAGVLKACVGGDIAFNYVKQVH 183
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ G S P V N LI++ S+ G I+ A F K+ ++W +IS +G
Sbjct: 184 SRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEE 243
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKA--------------------------YALMGLV 163
EA+ LF D P S L A Y GLV
Sbjct: 244 EAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLV 303
Query: 164 G--EAYRLFLSMEEVYHIEPSEE--HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP-LI 218
R +S E ++ S + Y+ ++ L + G + LE + L P I
Sbjct: 304 ALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCI 363
Query: 219 WRTLLLSS-----RVHGDMKLAKYALDKLLELDP-------GMYVGCW-IEIQNKIYEFV 265
LLS+ +H M+L +A+ + D +Y C +E +K +
Sbjct: 364 TVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTT 423
Query: 266 SNEELT------------SEVSDKLAEIEENMKELGFVLNRSLYQTKMKA-VALGLISFP 312
E + +SD EI M+ G + N+ Y + ++ +LG +
Sbjct: 424 ETENIVLWNVMLVAYGQLDNLSDSF-EIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLG 482
Query: 313 HGMPTRVIKS 322
+ T VIK+
Sbjct: 483 EQIHTHVIKT 492
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 190/408 (46%), Gaps = 58/408 (14%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W +++ + E + ++Q + Y++ L+ C + L G Q A
Sbjct: 322 WTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAV 381
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G VG+ L+++ +CG ++ A+ FK ++ +SW IIS HG +AL+
Sbjct: 382 KAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALE 441
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
F+ + TF L A + MGLV E + F SM ++Y I PS EHY+ MV+ L
Sbjct: 442 AFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDIL 501
Query: 194 GRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM-- 249
GRAG F EV FI+ + L P LIW T+L + ++HG++ + A KL E++P M
Sbjct: 502 GRAGKFNEVKIFIEEM---NLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDS 558
Query: 250 -YV-------------------------------GC-WIEIQNKIYEFVSNE---ELTSE 273
Y+ GC W+E+ +++ F+S + E
Sbjct: 559 SYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIRE 618
Query: 274 VSDKLAEIEENMKELGFV---------------LNRSLYQTKMKAVALGLISFPHGMPTR 318
+ KL ++ +++ +G+V + Y ++ A++ L+S P R
Sbjct: 619 IYAKLDKLGQSLMSIGYVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVKPIR 678
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +C H + +S I +E+VV+D FHHFK G CSC+D +
Sbjct: 679 IFKNLRICEDCHDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 64/150 (42%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN LL + D + V +L +++ C +++ +L C N L G A
Sbjct: 17 VSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKVLHAL 76
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G +G L+++ S+CG + DA F + ++W+ +I+ GH EA
Sbjct: 77 ALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEA 136
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+LF + + N T S + MG
Sbjct: 137 AELFHLMRRKGARPNQFTLSSLVSTATNMG 166
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 92/238 (38%), Gaps = 15/238 (6%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN LL ++ + ++ L + ++ +L SC + + G Q A+
Sbjct: 219 VSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAH 278
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K VG L+++ ++ ++DA +AF ++ SWT IIS +A
Sbjct: 279 IIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKA 338
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY----- 186
+ F+ Q N T S L + M + +L + + H+
Sbjct: 339 VKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQL-------HAVAVKAGHFGDIFV 391
Query: 187 -SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
S +V+ G+ G E KG++ + W T++ HG + A A +L
Sbjct: 392 GSALVDLYGKCGCMEHAEAIFKGLISRDIVS--WNTIISGYSQHGQGEKALEAFRMML 447
>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 895
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 194/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + + D + +++ ++ D ++ IL C + G + Y
Sbjct: 489 ISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGY 548
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G S+ +GN LI + S+CG +++ FK EK+ ++WT +ISA +G +A
Sbjct: 549 IFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKA 608
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L F+D + + F + + A + G+V E R F M+ Y++EP EHY+ +V+
Sbjct: 609 LKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVD 668
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DPG 248
L R+G+ + EFI + P K +W LL + R G+ +A+ K+LEL D G
Sbjct: 669 LLARSGLLAQAEEFILSM-PMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTG 727
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNE---ELTSE 273
YV WIEIQ ++Y F + + E +
Sbjct: 728 YYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDK 787
Query: 274 VSDKLAEIEENMKELGFV--LNRSLY-------------QTKMKAVALGLISFPHGMPTR 318
V D L + M + G+V L +L+ ++ A+A GL++ G P
Sbjct: 788 VKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTKPGSPLL 847
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ +CG H+ ++++ I++RE++V+D FH FKDG CSC D +
Sbjct: 848 VMKNLRVCGDCHTVTKYITKIMQREILVRDANRFHRFKDGACSCGDHW 895
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+++ ++NSC + L +G + + G S +GN LI++ SR +D+A F
Sbjct: 120 DAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVF 179
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
+ ++S+SW +IS ++G +ALD++ ++R T M P F
Sbjct: 180 EEMSNRDSVSWNSLISGYCSNGFWEDALDMY--HKFRMTGMVPDCF 223
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ + +E +L + + GF+ D SI + +C L VG
Sbjct: 289 VTWNTMICGYAQLGRHEASVKLF--MDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHK 346
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ G N LI++ ++CG + A F +T K+S++W +I+ G+ E
Sbjct: 347 YLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKE 406
Query: 131 ALDLFK 136
L+ FK
Sbjct: 407 GLESFK 412
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/126 (18%), Positives = 55/126 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ +E ++ + ++ D +++ +L +C + + + G
Sbjct: 188 VSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGV 247
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G+ +GN L+++ + ++ +A F K+S++W +I G +
Sbjct: 248 IEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEAS 307
Query: 132 LDLFKD 137
+ LF D
Sbjct: 308 VKLFMD 313
>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g13650-like [Cucumis sativus]
Length = 1037
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 197/409 (48%), Gaps = 56/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN L+ ++ +E ++ R+ ++ ++ +++ + + G Q +
Sbjct: 631 ISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSM 690
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G S V N LI++ ++ G I DA F E+N +SW +I+ HG EA
Sbjct: 691 VLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEA 750
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF++ + N TF L A + +GLV E F SM +++ + P EHY +V+
Sbjct: 751 LRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVD 810
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG + +E+IK + P +IWRTLL + +H ++++ + A LLEL+P
Sbjct: 811 LLGRAGQLDRAMEYIKEM-PIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSA 869
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEE---LTSE 273
YV WIE++N ++ F + ++ LT++
Sbjct: 870 TYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQ 929
Query: 274 VSDKLAEIEENMKELGFV------LNRS----------LYQTKMKAVALGLISFPHGMPT 317
+ + + + E+G+V LN S ++ K+ A+A GL+S + +P
Sbjct: 930 IYEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKL-AIAFGLLSLGNNIPI 988
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV+K++ +C H+ +++S I R ++V+D FHHF G CSCKD +
Sbjct: 989 RVMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 99/228 (43%), Gaps = 40/228 (17%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN++L A + + E+ ++Q+ + ++ IL +C + L +G Q +
Sbjct: 429 VLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTH 488
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + V + LI++ ++ G++ A + PE + +SWT +I+ V H SEA
Sbjct: 489 VIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEA 548
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA----------------------------------- 156
L LF++ ++R + F SA+ A
Sbjct: 549 LQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISL 608
Query: 157 YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
YA G + EAY F + + +I ++ +V L ++G FEE L+
Sbjct: 609 YARCGRIQEAYLAFEKIGDKNNIS-----WNSLVSGLAQSGYFEEALQ 651
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 62/130 (47%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
L D + W ++ ++ + +L E ++ D+ +++C L G
Sbjct: 524 LPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQG 583
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Q A G + ++ N LI++ +RCG+I +A LAF+ +KN++SW ++S
Sbjct: 584 QQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQS 643
Query: 126 GHPSEALDLF 135
G+ EAL +F
Sbjct: 644 GYFEEALQVF 653
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 83/370 (22%), Positives = 135/370 (36%), Gaps = 61/370 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLN-PILLNVGTQAQ 69
WN ++ + K V L R+ L G + Y+ +L +C+ I N Q
Sbjct: 125 FSWNKMIHVFVAQKSNFQVFCLFRRM-LAEGITPNGYTFAGVLKACVGGDIAFNYVKQVH 183
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ G S P V N LI++ S+ G I+ A F K+ ++W +IS +G
Sbjct: 184 SRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEE 243
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKA--------------------------YALMGLV 163
EA+ LF D P S L A Y GLV
Sbjct: 244 EAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLV 303
Query: 164 G--EAYRLFLSMEEVYHIEPSEE--HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP-LI 218
R +S E ++ S + Y+ ++ L + G + LE + L P I
Sbjct: 304 ALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCI 363
Query: 219 WRTLLLSS-----RVHGDMKLAKYALDKLLELDP-------GMYVGCW-IEIQNKIYEFV 265
LLS+ +H M+L +A+ + D +Y C +E +K +
Sbjct: 364 TVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXT 423
Query: 266 SNEELT------------SEVSDKLAEIEENMKELGFVLNRSLYQTKMKA-VALGLISFP 312
E + +SD EI M+ G + N+ Y + ++ +LG +
Sbjct: 424 ETENIVLWNVMLVAYGQLDNLSDSF-EIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLG 482
Query: 313 HGMPTRVIKS 322
+ T VIK+
Sbjct: 483 EQIHTHVIKT 492
>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 802
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/406 (26%), Positives = 184/406 (45%), Gaps = 54/406 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ C + + L + + Y+ +LN+C + +G + Y
Sbjct: 263 VSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGY 322
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
MT+ G + L+++ S+CG + A F P + +SWT +I +G P A
Sbjct: 323 MTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMA 382
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L F+ T + TF L A GLV F S++E + + + +HY+ +++
Sbjct: 383 LQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVID 442
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
L R+G F+E I + P K +W +LL R+HG+++LA+ A L EL+P
Sbjct: 443 LLARSGRFKEAENIIDNM-PMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPA 501
Query: 248 ------------GMYV-------------------GCWIEIQNKIYEFVSNEELTSEVSD 276
G++ WIEI+ +++ F+ + ++SD
Sbjct: 502 TYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISD 561
Query: 277 ---KLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPTR 318
L E+ + MKE G+V + + Y ++ AVA G+IS G P +
Sbjct: 562 IHEYLGELSKKMKEEGYVADTNFVLHDVEEEQKEQNIFYHSEKLAVAFGIISTSPGTPIK 621
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
V K++ C H+A +++S I++R+++V+D FH F DG CSCKD
Sbjct: 622 VFKNLRTCVDCHNAMKYISKIVQRKIIVRDSNRFHCFVDGSCSCKD 667
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
++ +CL L +G + A+ I + N LI++ ++CG + DA + F P+K+
Sbjct: 69 LIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKD 128
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
SW +IS N G +A LF + R + ++ + + Y G EA LF
Sbjct: 129 LCSWNTMISGYANVGRIEQARKLFDEMPHR----DNFSWNAVISGYVSQGWYMEALDLFR 184
Query: 172 SMEE 175
M+E
Sbjct: 185 MMQE 188
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G + Y+ + GL V L+++ +CG +++A F +K+ +SWT +I
Sbjct: 215 GKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFE 274
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
G E LF+D N TF L A A
Sbjct: 275 DGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACA 308
>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Glycine max]
Length = 694
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 184/408 (45%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ A ++ +E L + + Y+ +LN+C L G A
Sbjct: 288 VVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHAR 347
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G +H V N LIN+ S+ G ID + F ++ ++W +I +HG +A
Sbjct: 348 VEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQA 407
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L +F+D N TF L AY+ +GLV E + + + IEP EHY+ MV
Sbjct: 408 LQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVA 467
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
L RAG+ +E F+K K + WRTLL + VH + L + + +L++DP G
Sbjct: 468 LLSRAGLLDEAENFMK-TTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVG 526
Query: 249 MYV--------------------------------GCWIEIQNKIYEFV---SNEELTSE 273
Y W++I+N I+ F+ SN + +
Sbjct: 527 TYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPESIQ 586
Query: 274 VSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPTR 318
+ K+ ++ +K LG+V N + Y ++ A+A GL+ P P R
Sbjct: 587 IYKKVQQLLALIKPLGYVPNIASVLHDVEDEQKEGYLSYHSEKLALAYGLMKIPSPAPIR 646
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+IK++ MC H+A + +S + R ++V+D FHHF+DG C+C D +
Sbjct: 647 IIKNLRMCDDCHTAVKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 1/152 (0%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
++D+ +N +L A +++ E E+L R+ C D + ++ C L +G
Sbjct: 183 VNDI-FSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGL 241
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ A + + GL+ VG+ LI++ +CG++ +A F +N + WT +++A + +G
Sbjct: 242 RVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNG 301
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+ E+L+LF T N TF L A A
Sbjct: 302 YFEESLNLFTCMDREGTLPNEYTFAVLLNACA 333
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 15/184 (8%)
Query: 79 SHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDK 138
SH + N L+++ +CG++ A F + P +N +SW +++ ++ G+ E L LFK+
Sbjct: 48 SHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNM 107
Query: 139 -QWRYTSMNPTTFRSALKAYALMGLVGEAYR---LFLSMEEVYHIEPSEEHYSIMVEALG 194
+ N F +AL A + G V E + L V H + S +V
Sbjct: 108 VSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCH----QYVKSALVHMYS 163
Query: 195 RAGMFEEVLEFIKGIVPGKLCPLIW------RTLLLSSRVHGDMKLAKYALDKLLELDPG 248
R E L+ + VPG+ I+ L+ S R +++ + +D+ + D
Sbjct: 164 RCSHVELALQVLD-TVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHV 222
Query: 249 MYVG 252
YVG
Sbjct: 223 TYVG 226
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLER-IQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN+L+ + ++ V L + + L + Y L++C + + G Q
Sbjct: 82 VSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHG 141
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS---LSWTFIISARVNHGH 127
+ K GL+ H V + L+++ SRC ++ A + P ++ S+ +++A V G
Sbjct: 142 LLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGR 201
Query: 128 PSEALDLFK 136
EA+++ +
Sbjct: 202 GEEAVEVLR 210
>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
Length = 818
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/429 (27%), Positives = 198/429 (46%), Gaps = 73/429 (17%)
Query: 1 LKLCSLISDV-EIPWNLLLKACIKAKDYEMVHEL---LERIQLCCGFIDSYSICDILNSC 56
LK+ S + D E+ WN ++ ++ E + ++ Q+ C + +YS +L +C
Sbjct: 400 LKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQV-TYS--SVLRAC 456
Query: 57 LNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWT 116
+ + Q + K + +GN LI+ ++CG I DA F+ E++ +SW
Sbjct: 457 ASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWN 516
Query: 117 FIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEV 176
IIS HG ++AL+LF N TF + L GLV LF SM
Sbjct: 517 AIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRID 576
Query: 177 YHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAK 236
+ I+PS EHY+ +V LGRAG + L+FI G +P ++WR LL S +H ++ L +
Sbjct: 577 HGIKPSMEHYTCIVRLLGRAGRLNDALQFI-GDIPSAPSAMVWRALLSSCIIHKNVALGR 635
Query: 237 YALDKLLELDP----------GMYVGC-------------------------WIEIQNKI 261
++ +K+LE++P MY W+EI+ +I
Sbjct: 636 FSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEI 695
Query: 262 YEF-----------------------VSNEELTSEVSDKLAEIEENMKELGFVLNRSLY- 297
+ F S E +++ L ++++ K R L+
Sbjct: 696 HAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQK------TRMLWV 749
Query: 298 QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKD 357
++ A+A GL+ P G P R++K++ C H+A +S I++RE++V+D FHHF+D
Sbjct: 750 HSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFED 809
Query: 358 GKCSCKDAY 366
GKCSC D +
Sbjct: 810 GKCSCGDYW 818
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 94/220 (42%), Gaps = 3/220 (1%)
Query: 23 KAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA 82
++ E EL R+ + YS+ +L +C N + L+ G Q + K G S
Sbjct: 322 QSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLF 381
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
VGN L++ ++C +D + F S + N +SW I+ G EAL +F + Q
Sbjct: 382 VGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQ 441
Query: 143 TSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV 202
T+ S L+A A + A ++ S+E+ + S +++ + G +
Sbjct: 442 MPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNS-LIDTYAKCGYIRDA 500
Query: 203 LEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
L+ + ++ + + W ++ +HG A D++
Sbjct: 501 LKVFQHLMERDI--ISWNAIISGYALHGQAADALELFDRM 538
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 2/125 (1%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV--GNCLININSRCGKIDDAD 101
+DS++ L C+ G ++ +RG + + N L+N+ + G + A
Sbjct: 57 VDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASAR 116
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
F PE+N +S+ ++ A G A LF+ +W +N + LK M
Sbjct: 117 RLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMD 176
Query: 162 LVGEA 166
G A
Sbjct: 177 AAGLA 181
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 79 SHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
+ P VG L+++ ++CG I DA LAF+ P + + +F+IS +A +LF
Sbjct: 277 TEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELF 333
>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
Length = 818
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/411 (26%), Positives = 199/411 (48%), Gaps = 57/411 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQA 70
I WN ++ ++ ++ + G D+ + +L +C + L+ A
Sbjct: 409 ISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHA 468
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+++ L S+ V N LIN+ +RCG +++A+ F + EK +SWT +++A +G +E
Sbjct: 469 QISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAE 528
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
ALDLF++ + T+ S L G + + +R F M E++ + P+ +H++ MV
Sbjct: 529 ALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMV 588
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGR+G + E ++ + P + P+ W T L + R+HG ++L + A +++ ELDP
Sbjct: 589 DLLGRSGRLFDAKELLESM-PFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSST 647
Query: 248 -------GMYV--GCW-----------------------IEIQNKIYEFVSNEEL---TS 272
+Y G W IE+ K++EF S + T
Sbjct: 648 APYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTD 707
Query: 273 EVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISF-PHGMP 316
E+ ++L + M+ G+V + LY ++ A+A GL+S G P
Sbjct: 708 EICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEP 767
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHF-KDGKCSCKDAY 366
RV+K++ +C H+A +F++ I R+++V+D FH F DGKCSC D +
Sbjct: 768 IRVVKNLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 89/191 (46%), Gaps = 1/191 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN+++ + D+ EL +++ + + IL +C + L G ++
Sbjct: 274 VSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSH 333
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ +RGL S AV L+N+ ++CG +++A F + +++++W+ +I A ++G+ +A
Sbjct: 334 ILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDA 393
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
K R S + ++ + + Y G A ++F M ++P + ++E
Sbjct: 394 RKARKVFD-RLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLE 452
Query: 192 ALGRAGMFEEV 202
A G EV
Sbjct: 453 ACASLGRLSEV 463
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 102/245 (41%), Gaps = 7/245 (2%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
SL + E WN ++ A ++ D+ + + ++ C +S + ++++ P +L
Sbjct: 167 SLQTRDETSWNAVILAHSQSGDWSGALRIFKEMK-CDVKPNSTTYINVISGFSTPEVLPE 225
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G + A + G + V LIN+ +CG +A F +++ +SW +I V
Sbjct: 226 GRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVL 285
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
+G EAL+L++ TF S L A + + + + RL S ++
Sbjct: 286 NGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQG-RLVHSHILERGLDSEVA 344
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG---DMKLAKYALDK 241
+ +V + G EE + + + W TL+ + +G D + A+ D+
Sbjct: 345 VATALVNMYAKCGSLEEARKVFNAMKNRD--AVAWSTLIGAYASNGYGKDARKARKVFDR 402
Query: 242 LLELD 246
L D
Sbjct: 403 LGSRD 407
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 4/158 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A + L R+ L D + +L +C + L G +
Sbjct: 76 VSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS---LAQGREIHNR 132
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ GL S ++ N L+ + +R G + DA F+S ++ SW +I A G S A
Sbjct: 133 VFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGA 192
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
L +FK+ + N TT+ + + ++ ++ E ++
Sbjct: 193 LRIFKEMKCDVKP-NSTTYINVISGFSTPEVLPEGRKI 229
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 39/159 (24%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTP--EKNSLSWTFIISARVNHGHPSEALDLFKDKQW 140
VGN LI++ +C + DA F+S ++N +SW +I+A +GH +EAL L+
Sbjct: 44 VGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNL 103
Query: 141 RYTSMNPTTFRSALKA--------------------------------YALMGLVGEAYR 168
+ + TF S L A YA G VG+A R
Sbjct: 104 QGLGTDHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKR 163
Query: 169 LFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK 207
+F S++ E ++ ++ A ++G + L K
Sbjct: 164 MFQSLQ-----TRDETSWNAVILAHSQSGDWSGALRIFK 197
>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
Length = 787
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/378 (30%), Positives = 187/378 (49%), Gaps = 59/378 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS ++ IL++ + LN G + ++ ++G + + N L+++ + CG +++A F
Sbjct: 413 DSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVF 472
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
T K+ + WT +I+A HG A++LF + + + TF + L A + GL+
Sbjct: 473 ICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLIN 532
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPL--IWRTL 222
E RL +M+ Y +EP EHY+ +V+ LGRA EE F+K + ++ P +W
Sbjct: 533 EGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSM---QIEPTAEVWCAF 589
Query: 223 LLSSRVHGDMKLAKYALDKLLELD---PGMYV---------------------------- 251
L + R+H + KL + A KLL+LD PG YV
Sbjct: 590 LGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLK 649
Query: 252 ---GC-WIEIQNKIYEFVSNEELTSE---VSDKLAEIEENM-KELGFVLNRSLY------ 297
GC WIE+ NK++ F+ ++ E + KLA+I E + KE G+V L
Sbjct: 650 KNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVGK 709
Query: 298 ---------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
++ A+A GL+S G P R+ K++ +C H+ C+ +S EREL+V+D
Sbjct: 710 EEKVQMLYGHSERLAIAYGLMSTSEGTPIRITKNLRVCVDCHTFCKLVSKFFERELIVRD 769
Query: 349 PGSFHHFKDGKCSCKDAY 366
FHHF+DG CSC D +
Sbjct: 770 ASRFHHFEDGVCSCGDFW 787
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W ++ A + + +LL ++Q +D+ I L +C L+ + Y
Sbjct: 280 ISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGY 339
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
KRGL S + N +I++ + CG I+ A F+S K+ +SWT +IS V++G +EA
Sbjct: 340 TLKRGL-SDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEA 398
Query: 132 LDLF 135
L +F
Sbjct: 399 LGVF 402
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 12/151 (7%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDS------YSICDILNSCLNPILLNVG 65
I WN ++ + Y E +Q CG D+ S+ IL + L G
Sbjct: 179 ITWNSMIAGFTQNGLYN------EALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNG 232
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ AY K L S+ +GN LI++ S+C + A L F K+ +SWT +I+A +
Sbjct: 233 KEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQN 292
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+EAL L + Q + ++ S L A
Sbjct: 293 NCHTEALKLLRKVQTKGMDVDTMMIGSTLLA 323
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 41/209 (19%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
DS++ +L +C ++ G + + K G S V N L+++ ++C I A
Sbjct: 8 FDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKL 67
Query: 104 FKSTPEKNS-LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA------ 156
F E+N +SW IISA +G EAL LF++ Q N T +AL+A
Sbjct: 68 FDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSF 127
Query: 157 -----------------------------YALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
+ G + A R+F ++E +I ++
Sbjct: 128 KKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNIT-----WN 182
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCP 216
M+ + G++ E L+F G+ L P
Sbjct: 183 SMIAGFTQNGLYNEALQFFCGLQDANLKP 211
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
++Y++ L +C + +G + A + K + V N L+ ++ R GK+ A F
Sbjct: 111 NTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIF 170
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
EK++++W +I+ +G +EAL F Q + + S L A +G
Sbjct: 171 DELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLG 227
>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/410 (27%), Positives = 191/410 (46%), Gaps = 55/410 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
++ W ++ C + E L + L D+++I +++SC L G
Sbjct: 287 KVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHG 346
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
G+ V + L+++ S+CG+ DA + FK +N +SW +I +G E
Sbjct: 347 KAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLE 406
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL L+++ + TF L A GLV F S+ +++ + P+ +HYS M+
Sbjct: 407 ALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMI 466
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
LGRAG ++ ++ IK + C LIW TLL R++ D+ + A L ELDP
Sbjct: 467 NLLGRAGYMDKAVDLIKSMTFEPNC-LIWSTLLSVCRINCDVNNGEMAARHLFELDPHNA 525
Query: 248 -------GMYVGC-------------------------WIEIQNKIYEFVSNEELTSE-- 273
+Y C WIEI N++++FV+ + SE
Sbjct: 526 GPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETE 585
Query: 274 -VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHG-MP 316
+ ++L + + ++E GF + +L Y ++ A+A LI PHG P
Sbjct: 586 QIYEELNRLIKKLQESGFTPDTNLVLHDVVEEEKFDSICYHSEKLALAFWLIKKPHGRTP 645
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +CG H +F+S II R ++++D FHHF +G+CSCKD++
Sbjct: 646 IRIMKNIRVCGDCHVFMKFVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y+ +L++C + + G Q + L V N L N+ ++CG +D A F
Sbjct: 156 YTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDR 215
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
KN +SW +IS + +G P LF + Q + T + L AY G + EA
Sbjct: 216 MVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEA 275
Query: 167 YRLFLSMEE 175
+ F ++E
Sbjct: 276 CKTFREIKE 284
>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/413 (27%), Positives = 198/413 (47%), Gaps = 63/413 (15%)
Query: 12 IPWNLLL----KACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQ 67
+ WN ++ + + +E+ H +L + G + ++ +L +C + L VG
Sbjct: 259 VSWNSMIAVYAQNGLSTDAFEVFHGML---KAGGGKYNEVTLSTLLLACAHEGALRVGMC 315
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
+ K G +++ + +I++ +CG+ + A AF EKN SWT +I+ HG
Sbjct: 316 LHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGF 375
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
EALD+F W N TF S L A + G + E +R F +M Y++EP EHY
Sbjct: 376 AREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYG 435
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
MV+ LGRAG +E IK + + ++W +LL + R+H D++LA+ + +L +LDP
Sbjct: 436 CMVDLLGRAGYIKEAYNLIKSM-KVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDP 494
Query: 248 ---GMYV---------GCW-----------------------IEIQNKIYEFVSNEE--- 269
G YV G W +E++ +++ F+ ++
Sbjct: 495 SNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHP 554
Query: 270 LTSEVSDKLAEIEENMKELGFVLNRS----------------LYQTKMKAVALGLISFPH 313
++ L E+ ++E G+V N + ++ K+ AVA G+++
Sbjct: 555 QHEKIYKYLEELSVKLQEAGYVPNMASVLHDVDEEEKEMIVRVHSEKL-AVAFGVMNSIP 613
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G VIK++ +CG H+ + +S I+ RE++V+D FHHFKDG CSC D +
Sbjct: 614 GSTIHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 59/117 (50%)
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
+ SC LN G QA G S V + LI++ S+CGK+ +A + F P +N
Sbjct: 89 IKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNI 148
Query: 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
++WT +I+ V + EAL +FK+ + + N +++ + A++ ++ R+
Sbjct: 149 VTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRV 205
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+DS ++ +L++C V K GL V N L++ ++CG++ +
Sbjct: 190 VDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKV 249
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
F EK+ +SW +I+ +G ++A ++F
Sbjct: 250 FDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVF 281
>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
Length = 643
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/408 (28%), Positives = 182/408 (44%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN LL C + E + R+ + ++ C N L G Q AY
Sbjct: 237 ILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAY 296
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G + + + LI++ +CG+I A F + +SWT +I HG EA
Sbjct: 297 VICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREA 356
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF+ + N TF + L A + GLV + ++ F SM Y I P+ EH++ + +
Sbjct: 357 LVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALAD 416
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
LGRAG +E FI + K +W TLL + RVH + LA+ K++EL+P
Sbjct: 417 TLGRAGELDEAYNFISKMQI-KPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIG 475
Query: 248 ------GMYVGC-------------------------WIEIQNKIYEFVSNEE---LTSE 273
MY WIE+++K++ FV+++
Sbjct: 476 SHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDR 535
Query: 274 VSDKLAEIEENMKELGFVLN-RSLYQ--------------TKMKAVALGLISFPHGMPTR 318
+ D L E M G V N ++Q ++ A+ G+IS P G R
Sbjct: 536 IIDALNAFSEQMAREGHVPNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTPAGTKIR 595
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ +C H+ +F+S + +RE+VV+D FHHFKDG CSC D +
Sbjct: 596 VMKNLRVCIDCHTVTKFISKLADREIVVRDANRFHHFKDGNCSCGDFW 643
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCC--GF-IDSYSICDILNSCLNPILLNVGTQA 68
+ WN L+ C + + HE L ++ C GF DS+++ +L + G +
Sbjct: 136 VSWNTLVLGCAEEGRH---HEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEV 192
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
+ + G S VG+ LI++ + C + D + F + P ++ + W +++ +G
Sbjct: 193 HGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSV 252
Query: 129 SEALDLFKDKQWRYTSMNPTTFRS 152
EAL +F+ P TF S
Sbjct: 253 EEALGIFRRMLQAGVRPVPVTFSS 276
>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 823
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/426 (27%), Positives = 192/426 (45%), Gaps = 67/426 (15%)
Query: 1 LKLCSLISDV-EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP 59
L++ S + D E+ WN ++ ++ E + ++ + +L +C N
Sbjct: 405 LEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANT 464
Query: 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
+ Q + + K + V N LI+ ++CG I DA F+S E + +SW II
Sbjct: 465 SSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSII 524
Query: 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179
SA HG + AL+LF N TF S L GLV + LF SM + I
Sbjct: 525 SAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRI 584
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239
+PS EHY+ +V LGRAG + L+FI G +P P++WR LL S VH ++ L +YA
Sbjct: 585 KPSMEHYTCIVRLLGRAGRLTDALKFI-GDIPSTPSPMVWRALLSSCVVHKNVALGRYAA 643
Query: 240 DKLLELDP----------GMYVGC-------------------------WIEIQNKIYEF 264
+K+L+++P MY W+EI+ +++ F
Sbjct: 644 EKVLDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAF 703
Query: 265 -----------------------VSNEELTSEVSDKLAEIEENMKELGFVLNRSLY-QTK 300
S E +++ L +++E K R L+ ++
Sbjct: 704 SVGSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKA------RMLWVHSE 757
Query: 301 MKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKC 360
A+A GL P G P R++K++ C H+ + +S I++RE++V+D FHHF++G C
Sbjct: 758 RLALAYGLSMTPPGHPIRIMKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGIC 817
Query: 361 SCKDAY 366
SC D +
Sbjct: 818 SCGDYW 823
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 104/239 (43%), Gaps = 5/239 (2%)
Query: 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQA 68
D I W+ L+ ++ E E+ R+ + +S+ +L +C N L +G Q
Sbjct: 313 DDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQI 372
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
K G S VGN L+++ ++C ++++ F S + N +SW II G
Sbjct: 373 HNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFA 432
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
+AL +F + + + TF S L+A A + A ++ S+ E +
Sbjct: 433 EDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIH-SLIEKSTFNNDTIVCNS 491
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLI-WRTLLLSSRVHGDMKLAKYALDKLLELD 246
+++ + G + L+ + IV C ++ W +++ + +HG A D++ + D
Sbjct: 492 LIDTYAKCGFIRDALKVFESIVE---CDVVSWNSIISAYALHGRATNALELFDRMNKSD 547
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 2/125 (1%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISH--PAVGNCLININSRCGKIDDAD 101
+DSY+ L C+ G A + +RG ++ N L+N ++ G + A
Sbjct: 43 LDSYACARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATAR 102
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
F PE+N +S+ ++ G EAL+LF+ Q +N + LK M
Sbjct: 103 RLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMD 162
Query: 162 LVGEA 166
G A
Sbjct: 163 APGLA 167
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 56 CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSW 115
CL+ LL G + T + P VG L+++ ++CG I+DA F+ P + + W
Sbjct: 261 CLSSALLGKGIHGCSVKTLYD--TEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILW 318
Query: 116 TFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+F+IS +A ++F + N + L+A A
Sbjct: 319 SFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACA 361
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 3/158 (1%)
Query: 26 DYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGN 85
++E EL R+Q ++ + + IL + + A K G + VG
Sbjct: 128 EFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGT 187
Query: 86 CLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM 145
LI+ S CG + A F K++++WT ++S + P AL+ F +
Sbjct: 188 ALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKP 247
Query: 146 NPTTFRSALKAYALM--GLVGEAYRLFLSMEEVYHIEP 181
NP SALKA + L+G+ S++ +Y EP
Sbjct: 248 NPFVLTSALKAAVCLSSALLGKGIH-GCSVKTLYDTEP 284
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 188/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A ++ ++ + +++Q ++ +L++C + L++G Y
Sbjct: 171 VTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGY 230
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + L +GN LI++ +CG ++ A F KN W II +G EA
Sbjct: 231 IRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEA 290
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F + + TF L + GL+ R F M VY +EP EHY MV+
Sbjct: 291 IAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVD 350
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG +E LE I+ + P K ++ +LL + ++H D KL + +LLELDP G
Sbjct: 351 LLGRAGYLKEALELIRAM-PMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGG 409
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTSE 273
YV GC IE+ N ++EFV+ + ++
Sbjct: 410 NYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQ 469
Query: 274 VSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPTR 318
++ L EI + +K G V N + Y ++ AVA GL+S P G R
Sbjct: 470 INAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIR 529
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ C HSA + +S +RE++V+D FHHF++G CSC D +
Sbjct: 530 VVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 5/129 (3%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I + G I+ A L F P K+ +SW II A +LF ++
Sbjct: 111 NSMITCYCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELF---LLMGSA 167
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
N T+ + + AY G G A +F M+ +++P+E ++ A G ++ E
Sbjct: 168 RNSVTWNTMISAYVQCGEFGTAISMFQQMQS-ENVKPTEVTMVSLLSACAHLGAL-DMGE 225
Query: 205 FIKGIVPGK 213
+I G + K
Sbjct: 226 WIHGYIRTK 234
>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 740
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/374 (27%), Positives = 190/374 (50%), Gaps = 56/374 (14%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
+I ++++C N ++ G ++ + + + VG +++ S+CG ++ A F
Sbjct: 368 TIVALISACSNLGAVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKM 427
Query: 108 PE--KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165
PE ++S +T +I HG+ ++AL+L++ +++ + TF + A + +GLV E
Sbjct: 428 PENDRDSFCYTAMIGGFAVHGYGNQALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEE 487
Query: 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS 225
+F SM+EV+ +EP EHY +++ LGRAG +E E++ + P K ++WR+LL +
Sbjct: 488 GLEIFKSMKEVHGVEPKLEHYGCLIDLLGRAGRLKEAEEWLADM-PMKPNAVLWRSLLGA 546
Query: 226 SRVHGDMKLAKYALDKLLELDP---GMYV------------------------------- 251
+R+HG++ + + AL KL+EL+P G YV
Sbjct: 547 ARIHGNLGVGEVALTKLIELEPETSGNYVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLP 606
Query: 252 -GCWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS------------ 295
+EI+ ++EF++ + + E+ K+AEI ++E G S
Sbjct: 607 GFSLVEIKGAMHEFLTGDRSHPFSKEIYLKIAEINSRLEEYGHKARTSEALFDLEEEDKE 666
Query: 296 ---LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
Y ++ A+A LI+ P + R+IK++ +CG H+ + +S RE++V+D F
Sbjct: 667 GVLSYHSERLAIAFALIASPSSLAIRIIKNLRVCGDCHAFTKLISVAYHREIIVRDRNRF 726
Query: 353 HHFKDGKCSCKDAY 366
HHFKDG CSC D +
Sbjct: 727 HHFKDGSCSCLDYW 740
>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 189/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ + ++ + YE L + D + + ++ +C + G Q A
Sbjct: 232 VTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNAL 291
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
++K G S+ V + LI++ ++CG I+++ F+ ++N + W +IS H E
Sbjct: 292 LSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEV 351
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF+ Q S N TF S L A MGLV + + F M + +H+ P+ HYS MV+
Sbjct: 352 MILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVD 411
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
L RAG E + I + P +W +LL S R HG+++LA+ A KL +++P
Sbjct: 412 TLSRAGQIFEAYDLISKL-PFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSG 470
Query: 248 ------GMYVG-------------------------CWIEIQNKIYEFV---SNEELTSE 273
MY WIEI++K++ F+ N E
Sbjct: 471 NYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVE 530
Query: 274 VSDKLAEIEENMKELGF---------VLNRSLYQTKMK------AVALGLISFPHGMPTR 318
+ KL E+ + +++LG+ + S+ Q ++ A +GL+ P P R
Sbjct: 531 IYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIR 590
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +CG HS + S R+++V+D FHHFK+G CSC D +
Sbjct: 591 IMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%)
Query: 51 DILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK 110
+IL C LL G A + GL + N LIN+ S+CG +D A F P +
Sbjct: 69 EILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSR 128
Query: 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+ +SW +I + +G +EALDL Q T + T S L A A
Sbjct: 129 SLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACA 176
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + + + +LL ++Q ++I +L +C L+ A+
Sbjct: 131 VSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAF 190
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + + V L+++ ++CG + DA F+S P+++ ++W+ + + V + +A
Sbjct: 191 AIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQA 250
Query: 132 LDLFKDKQW 140
L LF+ K W
Sbjct: 251 LALFR-KAW 258
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 194/412 (47%), Gaps = 58/412 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + +E ++ +++++ D +++ +L+SC + L++G Q +
Sbjct: 568 VSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRF 627
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+R L+ + VGN LI++ ++CG + A F S P+++ +W +I HG EA
Sbjct: 628 AGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEA 687
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F N TF L + GLV E + F M ++++P +HY MV+
Sbjct: 688 ITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVD 747
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD----- 246
GRAG +E LE I+ P + P++WRTLL S ++H ++++ + A+ L++L
Sbjct: 748 LFGRAGKLKEALEVIRS-SPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAG 806
Query: 247 -----PGMYVGC-------------------------WIEIQNKIYEFVSNEEL---TSE 273
G+Y WIE+ ++++ FV +++ + E
Sbjct: 807 DCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSRE 866
Query: 274 VSDKLAEIEENMKELGFVLNRS-------------------LYQTKMKAVALGLISFPHG 314
+ KL E+ +G+ + S Y ++ A+A GL P G
Sbjct: 867 IYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEG 926
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +C H+ +F+S +RE++V+D FHHF+ G CSCK+ +
Sbjct: 927 TSLLIVKNLRVCRDCHNFTKFVSKAFDREIIVRDRVRFHHFRGGHCSCKEFW 978
>gi|115473599|ref|NP_001060398.1| Os07g0636900 [Oryza sativa Japonica Group]
gi|113611934|dbj|BAF22312.1| Os07g0636900, partial [Oryza sativa Japonica Group]
Length = 352
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 168/339 (49%), Gaps = 58/339 (17%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
+G LI++ ++CG I+ A F PEK+ +W+ +I NHG E+L LF
Sbjct: 17 LGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEG 76
Query: 143 TSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV 202
N TF L A +GLV E + F SM EV+ IEP+ EHY MV+ LGR+G EE
Sbjct: 77 MKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEA 136
Query: 203 LEFIKGIV--PGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMYV------ 251
+ I+ + P +IWR LL + R+H ++++A+ A+ KL LDP G YV
Sbjct: 137 RQLIRSMTFEPD---TIIWRALLGACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIY 193
Query: 252 ---GCW-----------------------IEIQNKIYEFVSNEEL---TSEVSDKLAEIE 282
W IE KI+EFVS + L + E+ L E+
Sbjct: 194 AQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMM 253
Query: 283 ENMKELGF------VLN--------RSLYQTKMK-AVALGLISFPHGMPTRVIKSVGMCG 327
+ +K+ G+ VL RSL + K A+A L++ P R+ K++ C
Sbjct: 254 DRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLAIAFALLTTPARSTIRITKNLRACE 313
Query: 328 YSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
HSA + +S + +R+L+V+D FHHF +G+CSCKD +
Sbjct: 314 DCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCKDYW 352
>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/409 (29%), Positives = 199/409 (48%), Gaps = 54/409 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
++ W+ ++ ++ + YE L R Q + ++I L++C L G Q QA
Sbjct: 214 DVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQA 273
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K G+ S+ V + LI++ ++CG I++A F S EKN + W I+S H E
Sbjct: 274 VSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLE 333
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+ F+ Q N T+ S L A + +GLV + + F M V+++ P+ HYS MV
Sbjct: 334 AMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMV 393
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG+ E +FI + P +W +LL S R++ +++LA+ A L E++P
Sbjct: 394 DILGRAGLLHEAKDFIDRM-PFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNA 452
Query: 248 GMYV--------------------------------GCWIEIQNKIYEFV---SNEELTS 272
G +V WIEI++K++ F+ N
Sbjct: 453 GNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIV 512
Query: 273 EVSDKLAEIEENMKELGFV---------LNRSLYQTKMK------AVALGLISFPHGMPT 317
E+ KL ++ MK++G+ + S Q ++ A+ G++ PHG P
Sbjct: 513 EIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPI 572
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +CG HS + S+I ERE++V+D FHHFK+G CSC + +
Sbjct: 573 RIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 621
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 81/199 (40%), Gaps = 35/199 (17%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + + D E L ++Q +++ ++ +C + Q +
Sbjct: 114 VSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGF 173
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K L S+ VG L+++ ++CG + DA+L F+ PE++ ++W+ +++ V + EA
Sbjct: 174 ALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEA 233
Query: 132 LDLFKDKQWRYTSMNPTT-----------------------------------FRSALKA 156
L LF Q N T S +
Sbjct: 234 LVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDM 293
Query: 157 YALMGLVGEAYRLFLSMEE 175
YA G++ EAY +F S+EE
Sbjct: 294 YAKCGIIEEAYTVFSSVEE 312
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G A + + GL + N L+N+ S+CG ++ A F P ++ +SW ++ +
Sbjct: 66 GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQ 125
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
+G +AL LF Q TS + T S + A A V E +L
Sbjct: 126 NGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQL 170
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 177/375 (47%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ ++ +C + L+ ++ K G + N LI + ++CG ++ A F
Sbjct: 354 DQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIF 413
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P KN +SWT +ISA HG AL F + N TF L A + GLV
Sbjct: 414 DKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVE 473
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E ++F SM ++I P HY MV+ GRA + E LE ++ + P +IW +L+
Sbjct: 474 EGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAM-PLAPNVIIWGSLMA 532
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
+ RVHG+++L ++A +LLELDP G +V
Sbjct: 533 ACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKE 592
Query: 252 -GC-WIEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGFVLNR------------ 294
GC E+ N+I+EF+ + + E+ +KL E+ +K +G+ N
Sbjct: 593 RGCSRFELNNEIHEFLVADRSHKHADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEK 652
Query: 295 ---SLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
L+ ++ A+ GL+ G R+IK++ +C H+ + S + ERE+VV+D
Sbjct: 653 KEVVLWHSEKLALCYGLMRDGTGSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTR 712
Query: 352 FHHFKDGKCSCKDAY 366
FHH+KDG CSCKD +
Sbjct: 713 FHHYKDGVCSCKDYW 727
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 36/183 (19%)
Query: 15 NLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTK 74
N L+ ++++ E + ER++ +D +S +L + L G + K
Sbjct: 91 NRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAK 150
Query: 75 RGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDL 134
G S P V L+ + + CG+I +A L F ++ ++W+ +I
Sbjct: 151 LGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMID-------------- 196
Query: 135 FKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALG 194
Y GL +A LF M+ Y++EP E S ++ A G
Sbjct: 197 ---------------------GYCQSGLFNDALLLFEEMKN-YNVEPDEMMLSTVLSACG 234
Query: 195 RAG 197
RAG
Sbjct: 235 RAG 237
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 22/165 (13%)
Query: 11 EIPWNLLLKACIKA---------KDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL 61
E+ + +L AC +A D+ M + ++ L + Y+ C ++ LN
Sbjct: 223 EMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLF- 281
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
MT + L++ A ++ S+ G+I++A F +K+ + W+ +IS
Sbjct: 282 --------EKMTPKNLVASTA----MVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISG 329
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
P EAL+LF + Q + T S + A A +G + +A
Sbjct: 330 YAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQA 374
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 188/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A ++ ++ + +++Q ++ +L++C + L++G Y
Sbjct: 99 VTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGY 158
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + L +GN LI++ +CG ++ A F KN W II +G EA
Sbjct: 159 IRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEA 218
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F + + TF L + GL+ R F M VY +EP EHY MV+
Sbjct: 219 IAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVD 278
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG +E LE I+ + P K ++ +LL + ++H D KL + +LLELDP G
Sbjct: 279 LLGRAGYLKEALELIRAM-PMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGG 337
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTSE 273
YV GC IE+ N ++EFV+ + ++
Sbjct: 338 NYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQ 397
Query: 274 VSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPTR 318
++ L EI + +K G V N + Y ++ AVA GL+S P G R
Sbjct: 398 INAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIR 457
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ C HSA + +S +RE++V+D FHHF++G CSC D +
Sbjct: 458 VVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 505
>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
Length = 787
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/409 (30%), Positives = 185/409 (45%), Gaps = 63/409 (15%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ + EM L E++ + +I L++C L++G +T
Sbjct: 382 WNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIIT 441
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ L + V LI++ ++CG I +A F + KN +SW +I+ HG +EAL
Sbjct: 442 EEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALK 501
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
L+KD + TF S L A + GLV E +++F SM + Y I P EH + MV+ L
Sbjct: 502 LYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLL 561
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMY 250
GRAG +E E I + P +W LL + VH D LAK A KL ELDP G Y
Sbjct: 562 GRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYY 621
Query: 251 V--------------------------------GCWIEIQNKIYEFVSN----------- 267
V IEI NK + F++
Sbjct: 622 VLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIY 681
Query: 268 ---EELTS---------EVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPHGM 315
E+LT+ E L ++EE KE + ++ A+A GL+S G
Sbjct: 682 SYLEKLTAKMIEAGYRPETEAALYDVEEEEKE-----HMVKVHSEKLAIAFGLLSTEPGT 736
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
R+IK++ +C H+A +F+S + +R +VV+D FHHF+DG CSC D
Sbjct: 737 EIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGD 785
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 22/199 (11%)
Query: 51 DILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK 110
D+L CL+ ++ K G ++ V + ++ R ++ A AF + PEK
Sbjct: 329 DLLAQCLH-----------GFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEK 377
Query: 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL--VGEAYR 168
SW +IS +G A+ LF+ NP T S L A A +G +G+
Sbjct: 378 TMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLH 437
Query: 169 LFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRV 228
++ E+ +EP+ + +++ + G E + + + W ++ +
Sbjct: 438 RIITEED---LEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNV--VSWNAMIAGYGL 492
Query: 229 HGD----MKLAKYALDKLL 243
HG +KL K LD L
Sbjct: 493 HGQGAEALKLYKDMLDAHL 511
>gi|15240665|ref|NP_199850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171167|sp|Q9FK33.1|PP427_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g50390, chloroplastic; Flags: Precursor
gi|9758921|dbj|BAB09458.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332008555|gb|AED95938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 701
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 173/376 (46%), Gaps = 58/376 (15%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
ID +++ ++ L + QA A + + G S L++ S+ G++D A
Sbjct: 323 IDQFTLSIMIRISTKLAKLELTKQAHASLIRNGFESEIVANTALVDFYSKWGRVDTARYV 382
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F P KN +SW ++ NHG ++A+ LF+ + N TF + L A A GL
Sbjct: 383 FDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAANVAPNHVTFLAVLSACAYSGLS 442
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ + +FLSM EV+ I+P HY+ M+E LGR G+ +E + FI+ P K +W LL
Sbjct: 443 EQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAIAFIRR-APLKTTVNMWAALL 501
Query: 224 LSSRVHGDMKLAKYALDKLLELDP---GMYV----------------------------- 251
+ R+ +++L + +KL + P G YV
Sbjct: 502 NACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNMYNSMGKTAEAAGVLETLESKGLSM 561
Query: 252 --GC-WIEIQNKIYEFVS-------NEELTSEVSDKLAEIEENMKELGFVLNRS------ 295
C W+E+ ++ + F+S NE + ++ K+ E+ E + E G+
Sbjct: 562 MPACTWVEVGDQTHSFLSGDRFDSYNETVKRQIYQKVDELMEEISEYGYSEEEQHLLPDV 621
Query: 296 ---------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVV 346
Y ++ A+A GL++ P P ++ ++ +C H F+S + RE+VV
Sbjct: 622 DEKEEERVGRYHSEKLAIAYGLVNTPEWNPLQITQNHRICKNCHKVVEFISLVTGREMVV 681
Query: 347 KDPGSFHHFKDGKCSC 362
+D FHHFK+GKCSC
Sbjct: 682 RDASRFHHFKEGKCSC 697
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
VG Q K G++ + V LI++ S+CG I+DA AF+ PEK +++W +I+
Sbjct: 242 VGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGYA 301
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTF 150
HG+ EAL L D + S++ T
Sbjct: 302 LHGYSEEALCLLYDMRDSGVSIDQFTL 328
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Query: 32 ELLERIQLCCGFIDSYSICDIL-NSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI 90
EL E +++ C F S D L +C+ + + +M G + N ++ +
Sbjct: 108 ELFEILEIRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLM 167
Query: 91 NSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
+ +CG I DA F PE+N S+ IIS VN G+ EA +LFK + TF
Sbjct: 168 HVKCGMIIDARRLFDEIPERNLYSYYSIISGFVNFGNYVEAFELFKMMWEELSDCETHTF 227
Query: 151 RSALKAYALMGLV 163
L+A A +G +
Sbjct: 228 AVMLRASAGLGSI 240
>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/407 (27%), Positives = 191/407 (46%), Gaps = 56/407 (13%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ C++ E E+L R+Q + +I +L +C N L G Q Y+
Sbjct: 283 WNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIF 342
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ L+ + ++CG ++ + F +++++SW +I A HG+ EAL
Sbjct: 343 RHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALL 402
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF++ N TF L + LV E +F SM + +EP +H+S MV+ L
Sbjct: 403 LFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVL 462
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DPGMY 250
RAG EE EFIK + P + W LL RV+ +++L + A ++L E+ +PG Y
Sbjct: 463 SRAGRLEEAYEFIKKM-PIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNPGNY 521
Query: 251 V-------------------------------GC-WIEIQNKIYEFV----SNEELTSEV 274
V GC WI+++N+++ FV SN++ + E+
Sbjct: 522 VLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQ-SDEI 580
Query: 275 SDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGMPTRV 319
L + E M+ G++ N ++ AVA G+++ RV
Sbjct: 581 YRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHSEKLAVAFGVLNLNGESSIRV 640
Query: 320 IKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
K++ +CG H+A +FM+ I+ +++V+D FHHF+DG CSC+D +
Sbjct: 641 FKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLCSCQDFW 687
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 58/131 (44%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S ++ IL +C + L G + ++ + G+ + V + L+N+ + C I A L F
Sbjct: 178 NSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVF 237
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
S ++++SW +I+A + + L +F +N ++ + + G
Sbjct: 238 DSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTE 297
Query: 165 EAYRLFLSMEE 175
+A + M+
Sbjct: 298 KALEVLSRMQN 308
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%)
Query: 76 GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
G S +GN LI++ +C + A L F+ P ++ +SWT + S VN G EAL F
Sbjct: 108 GFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAF 167
Query: 136 KDKQWRYTSMNPTTFRSALKA 156
+ N T S L A
Sbjct: 168 RKMGLNGERPNSVTVSSILPA 188
>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
Length = 650
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/394 (30%), Positives = 191/394 (48%), Gaps = 60/394 (15%)
Query: 28 EMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL 87
E+ EL+ Q C +S ++ +L +C L G Y+ ++GL S V + L
Sbjct: 262 ELFRELMLETQDLCP--NSVTMVSVLQACAALAALEQGRLIHGYILRKGLDSILPVISAL 319
Query: 88 ININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP 147
+ + +RCGK++ F +++ +SW +IS+ HG +A+ +F++ + +P
Sbjct: 320 VTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSP 379
Query: 148 TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK 207
+F S L A + GLV E LF SM + I PS EHY+ MV+ LGRA EE + I+
Sbjct: 380 ISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIE 439
Query: 208 G--IVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP----------------GM 249
I PG P +W +LL S R+H +++LA+ A +L +L+P GM
Sbjct: 440 NMRIEPG---PKVWGSLLGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLADIYAEAGM 496
Query: 250 YVGC-------------------WIEIQNKIYEFVSNEELT---SEVSDKLAEIEENMKE 287
+ G WIE++ KIY FVS +E+ ++ L ++ +KE
Sbjct: 497 WDGVKRVKKLLEARGLQKVPGRSWIEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKE 556
Query: 288 LGFVLNRSLYQTKMK---------------AVALGLISFPHGMPTRVIKSVGMCGYSHSA 332
G+V + +K AVA GLI+ G R+ KS+ +C HS
Sbjct: 557 EGYVPQTKVVLYDLKAAEKERIVLGHSEKLAVAFGLINSSKGEVIRITKSLRLCEDCHSF 616
Query: 333 CRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+F+S +E++V+D FHHF+DG CSC D +
Sbjct: 617 TKFISKFANKEILVRDVNRFHHFRDGVCSCGDYW 650
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 4/140 (2%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP----ILLNVGTQAQ 69
+N L +A A E V + R+ D ++ +L +C+ LLN G +
Sbjct: 139 YNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIH 198
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
A++ + G + + L+++ ++ G + +A F P KN +SW+ +I+ +G
Sbjct: 199 AHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAF 258
Query: 130 EALDLFKDKQWRYTSMNPTT 149
EAL+LF++ + P +
Sbjct: 259 EALELFRELMLETQDLCPNS 278
>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
Length = 1062
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 194/417 (46%), Gaps = 70/417 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICD------ILNSCLNPILLNVG 65
I WN ++ Y L E + C + S + D +LN+C + L G
Sbjct: 654 ISWNSMISG------YIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERG 707
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ A+ + L S V + L+++ S+CG+ID A F S +KN SW +IS H
Sbjct: 708 MEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARH 767
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
G +AL++F++ Q S + TF S L A + GLV F ME+ Y I P EH
Sbjct: 768 GLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELMED-YGILPRIEH 826
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS---SRVHGDMKLAKYALDKL 242
YS +++ LGRAG +++ E++K + P K LIWRT+L++ S+ + L A L
Sbjct: 827 YSCVIDLLGRAGELDKIQEYMKRM-PMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRML 885
Query: 243 LELDPGMYVG-----------------------------------CWIEIQNKIYEFVSN 267
LEL+P V W+ + + ++ F++
Sbjct: 886 LELEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHTFIAG 945
Query: 268 EEL---TSEVSDKLAEIEENMKELGFV---------------LNRSLYQTKMKAVALGLI 309
+ T E+ +KL + + ++ G+V Y ++ AVA L
Sbjct: 946 DRSHPNTKEIYEKLNFLIQKIRNAGYVPLTEYVLHDLEEENKEELLRYHSEKLAVAFVLT 1005
Query: 310 SFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G P R++K++ +CG H+A R++S I+ R+++++D FHHFKDGKCSC D +
Sbjct: 1006 RSSSGGPIRIMKNLRVCGDCHTAFRYISQIVGRQIILRDSIRFHHFKDGKCSCGDYW 1062
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ KRGL + N L+N ++ ++D A F P +N++SWT +IS V G P +A
Sbjct: 91 VVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDA 150
Query: 132 LDLFKDKQWRYTSMNPT--TFRSALKA 156
LF+ PT TF S L+A
Sbjct: 151 FPLFRAMLREGPGCRPTSFTFGSVLRA 177
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 55 SCLNPI-LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF-KSTPEKNS 112
+ L P+ +L +G Q + M K G+ AV N L++ ++ G +D + F + + +++
Sbjct: 594 AALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDA 653
Query: 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+SW +IS + +GH EA+D M+ TF L A A
Sbjct: 654 ISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACA 699
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 62 LNVGTQAQAYMTKRGLISHP-AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L G + A++ + G I AV N L+N+ ++CG ID A F+ ++ +SW II+
Sbjct: 398 LRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIIT 457
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFR--SALKAYALMGLVGEAYRL 169
A +G+ A + R S+ P+ F S L + A +GL+ +L
Sbjct: 458 ALDQNGYCEAA--MMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQL 506
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 20/178 (11%)
Query: 46 SYSICDILNSCLN--PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC--GKIDDAD 101
S++ +L +C + P L Q ++K S+ V N LI++ C G A
Sbjct: 168 SFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGPPILAQ 227
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS--MNPT--TFRSALKAY 157
F +TP ++ ++W ++S G LF+ Q+ + + PT TF S + A
Sbjct: 228 RVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITAT 287
Query: 158 AL----MGLVGEAYRLFLSMEEVYHIEPSEEHY--SIMVEALGRAGMFEEVLEFIKGI 209
L +GL+ + LF+ V S + Y S +V A R GM +E + G+
Sbjct: 288 YLSSCSLGLLDQ---LFV---RVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGL 339
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
L+SC LL G Q K GL +V N L+ + CG++ + F S +
Sbjct: 491 LSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDV 550
Query: 113 LSWTFIISARVNHGHP-SEALDLFKDKQWRYTSMNPTTFRSALKA 156
+SW I+ + P +E++ +F + N TF + L A
Sbjct: 551 VSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAA 595
>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Cucumis sativus]
gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Cucumis sativus]
Length = 706
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 178/377 (47%), Gaps = 56/377 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D ++ I+ C + Q A + + G L++ S+ GK+DDA
Sbjct: 332 MDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHV 391
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM-NPTTFRSALKAYALMGL 162
F +N +SW +I+ NHGH EA+D+F +K R M N TF + L A ++ GL
Sbjct: 392 FDRMSCRNIISWNALIAGYGNHGHGEEAIDMF-EKMLREGMMPNHVTFLAVLSACSISGL 450
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
+ +F SM + ++P H++ M+E LGR G+ +E I+ P + +W L
Sbjct: 451 FERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAYALIRK-APFQPTANMWAAL 509
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP----------------------------------G 248
L + RVHG+++L K+A +KL ++P
Sbjct: 510 LRACRVHGNLELGKFAAEKLYGMEPEKLSNYIVLLNIYNSSGKLKEAADVFQTLKRKGLR 569
Query: 249 MYVGC-WIEIQNKIYEFVSNEELTSEVSDKLAEIEE---NMKELGFVLNRS--------- 295
M C WIE+ N+ + F+S ++ ++ + +++E N+ +LG+V
Sbjct: 570 MLPACSWIEVNNQPHAFLSGDKHHVQIEKVVGKVDELMLNISKLGYVPEEQNFMLPDVDE 629
Query: 296 ------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
+Y ++ A+A GL++ P ++++S +C HS + ++ I +RE+V++D
Sbjct: 630 NEEKIRMYHSEKLAIAYGLLNTLEKTPLQIVQSHRICSDCHSVIKLIAMITKREIVIRDA 689
Query: 350 GSFHHFKDGKCSCKDAY 366
FHHF+DG CSC D +
Sbjct: 690 SRFHHFRDGSCSCGDYW 706
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 1/140 (0%)
Query: 25 KDYEMVHELLERIQLCCGFIDSYSICD-ILNSCLNPILLNVGTQAQAYMTKRGLISHPAV 83
K Y E+ E +L GF YS D ++N+C+ + + YM G +
Sbjct: 110 KKYRDALEMFEIFELEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYM 169
Query: 84 GNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYT 143
N ++ ++ +CG + DA F P +N++SW IIS V+ G+ EA LF + +
Sbjct: 170 RNRVLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFY 229
Query: 144 SMNPTTFRSALKAYALMGLV 163
P TF + ++A A + ++
Sbjct: 230 DCGPRTFATMIRASAGLEII 249
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Q + K GL V LI++ S+CG ++DA F P+K + W II+
Sbjct: 252 GRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYAL 311
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSM 173
HG+ EALDL+ + + M+ TF ++ + + V A ++ S+
Sbjct: 312 HGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASL 360
>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
mitochondrial [Vitis vinifera]
gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
Length = 610
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/418 (27%), Positives = 197/418 (47%), Gaps = 58/418 (13%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
S++ + WN L+ C++ + + + DS +I L++C + L
Sbjct: 195 SMVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLET 254
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G + + + G+ S+ V N +++ ++CG +D A F P++N +SW+ +I
Sbjct: 255 GEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAV 314
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL--FLSMEEVYHIEPS 182
+G +AL LF + + N TF + L A + G V E ++ F++ + +I+P
Sbjct: 315 NGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPR 374
Query: 183 EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
+EHY+ MV+ LGR+G EE FIK I+P + P IW LL + +H ++KL ++ D L
Sbjct: 375 KEHYACMVDLLGRSGHLEEAYNFIK-IMPIEADPGIWGALLGACAIHQNIKLGQHVADLL 433
Query: 243 LELDP----------GMY--VGCW-----------------------IEIQNKIYEFVSN 267
EL P MY G W +E +I+
Sbjct: 434 FELAPEIASYHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGG 493
Query: 268 EELTSEVSDKLAEIEE---NMKELGFVLNR----------------SLYQTKMKAVALGL 308
++ + + LA++E+ MK +G++ S + K+ A+A L
Sbjct: 494 DKSHPQSASILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKL-AIAFSL 552
Query: 309 ISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
I+ P RV+K++ +CG H+ C+ +S I RE++++D FHHFK+G CSCKD +
Sbjct: 553 INGSPKFPIRVMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 65/148 (43%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++K +K + + +++ D ++ ++ +C L G ++
Sbjct: 103 WNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKACAELAELWAGLGMHGHVV 162
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K GL AV L+ + + G++ A+ F S E++ ++W +I+ V G S+AL
Sbjct: 163 KHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQ 222
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMG 161
F++ + T SAL A +G
Sbjct: 223 SFREMGMAGIKPDSVTIVSALSACGHLG 250
>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Vitis vinifera]
Length = 594
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/409 (29%), Positives = 199/409 (48%), Gaps = 54/409 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
++ W+ ++ ++ + YE L R Q + ++I L++C L G Q QA
Sbjct: 187 DVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQA 246
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K G+ S+ V + LI++ ++CG I++A F S EKN + W I+S H E
Sbjct: 247 VSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLE 306
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+ F+ Q N T+ S L A + +GLV + + F M V+++ P+ HYS MV
Sbjct: 307 AMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMV 366
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG+ E +FI + P +W +LL S R++ +++LA+ A L E++P
Sbjct: 367 DILGRAGLLHEAKDFIDRM-PFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNA 425
Query: 248 GMYV--------------------------------GCWIEIQNKIYEFV---SNEELTS 272
G +V WIEI++K++ F+ N
Sbjct: 426 GNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIV 485
Query: 273 EVSDKLAEIEENMKELGFV---------LNRSLYQTKMK------AVALGLISFPHGMPT 317
E+ KL ++ MK++G+ + S Q ++ A+ G++ PHG P
Sbjct: 486 EIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPI 545
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +CG HS + S+I ERE++V+D FHHFK+G CSC + +
Sbjct: 546 RIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 594
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 81/199 (40%), Gaps = 35/199 (17%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + + D E L ++Q +++ ++ +C + Q +
Sbjct: 87 VSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGF 146
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K L S+ VG L+++ ++CG + DA+L F+ PE++ ++W+ +++ V + EA
Sbjct: 147 ALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEA 206
Query: 132 LDLFKDKQWRYTSMNPTT-----------------------------------FRSALKA 156
L LF Q N T S +
Sbjct: 207 LVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDM 266
Query: 157 YALMGLVGEAYRLFLSMEE 175
YA G++ EAY +F S+EE
Sbjct: 267 YAKCGIIEEAYTVFSSVEE 285
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G A + + GL + N L+N+ S+CG ++ A F P ++ +SW ++ +
Sbjct: 39 GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQ 98
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
+G +AL LF Q TS + T S + A A V E +L
Sbjct: 99 NGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQL 143
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 111/409 (27%), Positives = 188/409 (45%), Gaps = 54/409 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
EI W+ ++ I A Y+ E+ +++Q + + +L +C N ++ G A
Sbjct: 259 EISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHA 318
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ + + +G L+++ ++CG++D F+ E+ +W +I HG +
Sbjct: 319 YLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAED 378
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL+LF Q N T L A A G V + R+F +M E Y ++P EHY MV
Sbjct: 379 ALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMV 438
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGR+G+F E + I + P K +W LL + R+HG+ LA+ LLEL+P
Sbjct: 439 DLLGRSGLFSEAEDLINSM-PMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNS 497
Query: 248 GMY---------VGCW-----------------------IEIQNKIYEFV---SNEELTS 272
G Y VG + +++ ++EF +
Sbjct: 498 GRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMK 557
Query: 273 EVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPT 317
E+ KL I+E ++ G + S Y ++ A+A GLI+ G
Sbjct: 558 EIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRI 617
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +C HSA + +S I +RE++V+D +HHFK+G CSCKD +
Sbjct: 618 HIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 85/199 (42%), Gaps = 21/199 (10%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI-----DSYSICDILNSCLNPILLNVGTQA 68
WN+++K C++ ++L + I + + ++ + +C + G Q
Sbjct: 101 WNIVIKGCLEN------NKLFKAIYFYGRMVIDARPNKFTYPTLFKACSVAQAVQEGRQI 154
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
++ K G+ S + + I++ + G+++DA F S E + + W +I + G
Sbjct: 155 HGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSG-ESDVVCWNTMIDGYLKCGVL 213
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
A LF + N ++ + A G +G+A +LF M E E +S
Sbjct: 214 EAAKGLFA----QMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMS-----ERDEISWSS 264
Query: 189 MVEALGRAGMFEEVLEFIK 207
MV+ AG ++E LE +
Sbjct: 265 MVDGYISAGRYKEALEIFQ 283
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +IN ++ G + DA F E++ +SW+ ++ ++ G EAL++F+ Q T
Sbjct: 232 NVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETR 291
Query: 145 MNPTTFRSALKAYALMGLVGEA 166
S L A + +G + +
Sbjct: 292 PGRFILSSVLAACSNIGAIDQG 313
>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
Length = 825
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/415 (27%), Positives = 187/415 (45%), Gaps = 66/415 (15%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
E+ WN ++ ++ E + + ++ + +L +C N + Q +
Sbjct: 418 EVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHS 477
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K + V N LI+ ++CG I DA F+S + + +SW IIS HG ++
Sbjct: 478 LIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATD 537
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL+LF T N TF + L GLV + LF SM + I+PS +HY+ +V
Sbjct: 538 ALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIV 597
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
LGRAG + L+FI G +P P++WR LL S VH ++ L K++ +K+LE++P
Sbjct: 598 RLLGRAGRLNDALKFI-GDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDE 656
Query: 248 -------GMYVGC-------------------------WIEIQNKIYEF----------- 264
MY W+EI+ +++ F
Sbjct: 657 TTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMR 716
Query: 265 ------------VSNEELTSEVSDKLAEIEENMKELGFVLNRSLY-QTKMKAVALGLISF 311
S E +++ L +++E K R L+ ++ A+A GL
Sbjct: 717 IINAMLEWLNLKASREGYVPDINVVLHDVDEEEKA------RMLWVHSERLALAYGLSMT 770
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P G P R++K++ C H+ + +S I++RE+VV+D FHHF +G CSC D +
Sbjct: 771 PPGHPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 99/223 (44%), Gaps = 5/223 (2%)
Query: 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQA 68
D I W+ L+ ++ E E+ R+ + +S+ +L +C N L++G Q
Sbjct: 315 DDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQI 374
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
+ K G S VGN L+++ ++C ++++ F+S + N +SW II G
Sbjct: 375 HNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFA 434
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
+AL +F++ + + TF S L+A A + ++ S+ E +
Sbjct: 435 EDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIH-SLIEKSTFNNDTIVCNS 493
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLI-WRTLLLSSRVHG 230
+++ + G + L+ + I+ C ++ W ++ +HG
Sbjct: 494 LIDTYAKCGCIRDALKVFESIIQ---CDVVSWNAIISGYALHG 533
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 9/158 (5%)
Query: 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQA 68
+V + NL A ++ D E+ L ++ DSY+ +L C+ G
Sbjct: 17 NVPLRRNLAANAALQWLDDELASLALPKL-------DSYACARLLQRCIARGDARAGRAV 69
Query: 69 QAYMTKRGLISH--PAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
A + +RG ++ N L+N+ ++ G + A F PE+N +S+ ++ G
Sbjct: 70 HARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRG 129
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
EA LF+ Q +N + LK M G
Sbjct: 130 GFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPG 167
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 56 CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSW 115
CL+ +L G A T + P VG L+++ ++CG I+DA F+ P + + W
Sbjct: 263 CLSSAVLGKGIHGCAVKTL--CDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILW 320
Query: 116 TFIISARVNHGHPSEALDLF 135
+F+IS +A ++F
Sbjct: 321 SFLISRYAQSYQNEQAFEMF 340
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
VG+ LI+ S CG + A F K++++WT ++S + P +AL+ F +
Sbjct: 187 VGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAG 246
Query: 143 TSMNPTTFRSALKA 156
NP S LKA
Sbjct: 247 AKPNPFVLTSVLKA 260
>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Brachypodium distachyon]
Length = 689
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 185/373 (49%), Gaps = 57/373 (15%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
+ + +L +C + LN G A + + ++ V + L+++ +CG ++DA+ F
Sbjct: 317 FMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLD 376
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY--TSMNPTTFRSALKAYALMGLVG 164
PE+N ++W +I + G AL +F D R TS N T + + A + GL
Sbjct: 377 MPERNLVTWNAMIGGYAHIGDAQNALAVF-DAMIRSGGTSPNHITLVNVITACSRGGLTK 435
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ Y LF +M E + +EP EHY+ +V+ LGRAGM E E I+ + P + +W LL
Sbjct: 436 DGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRM-PMRPSISVWGALLG 494
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
+ ++HG +L + A +KL ELDP G +V
Sbjct: 495 ACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKE 554
Query: 252 -GC-WIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNR--SLY------- 297
GC WI +N ++ F + + + SE+ LA++++ M+ G++ + SLY
Sbjct: 555 PGCSWITWKNVVHVFYAKDTKHDRNSEIQALLAKLKKQMQASGYMPDTQYSLYDVEEEEK 614
Query: 298 ------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
++ A+A GLI P +P R+ K++ +C H A +F+S I+ RE++V+D
Sbjct: 615 ETEVFQHSEKLALAFGLIHIPPSVPIRITKNLRICVDCHRAFKFVSGIVGREIIVRDNNR 674
Query: 352 FHHFKDGKCSCKD 364
FH+FK +CSCKD
Sbjct: 675 FHYFKQFECSCKD 687
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 93/235 (39%), Gaps = 7/235 (2%)
Query: 12 IPWN-LLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
I WN ++ A I + E ++ G + S+C N+C + L++G Q
Sbjct: 181 IAWNAVMTNAVIDGRPLETFKAYFG-LREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHG 239
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
++ G +V N +++ +C A F +NS+SW +I A HG +
Sbjct: 240 FVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEED 299
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYH-IEPSEEHYSIM 189
AL ++ R T PT F + GL+G + L V I+ + S +
Sbjct: 300 ALAVYMGA--RNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASAL 357
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
V+ G+ G E+ + + L + W ++ GD + A D ++
Sbjct: 358 VDMYGKCGGVEDAEQVFLDMPERNL--VTWNAMIGGYAHIGDAQNALAVFDAMIR 410
>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 178/374 (47%), Gaps = 54/374 (14%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F +S ++ IL +C + L G + ++ + G V N L+++ +CG + A L
Sbjct: 322 FPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARL 381
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F PEK+ +SWT +I+ HG+ SEA+ F + + + +F S L A + GL
Sbjct: 382 LFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGL 441
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
+ E + F M IEP EHY+ +V+ L RAG + +FIK ++P + IW L
Sbjct: 442 LDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIK-MMPIEPDATIWGAL 500
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------------------------- 251
L R++ D+KLA+ + + EL+P G YV
Sbjct: 501 LCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLR 560
Query: 252 ---GC-WIEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMK-- 302
GC WIEI+ K++ FV S+ L +++ L + MKE G K
Sbjct: 561 KNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDT 620
Query: 303 -------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
A+A G++S P G RV K++ +CG H +FMS +++R+++++D
Sbjct: 621 EKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDS 680
Query: 350 GSFHHFKDGKCSCK 363
FHHFKDG CSC+
Sbjct: 681 NRFHHFKDGSCSCR 694
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 189/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + D E + ++ ++++I L++C L G + Y
Sbjct: 313 VSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKY 372
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ GL A+G L+++ ++CG I+ A F T +K+ +WT +I HGH +A
Sbjct: 373 IKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQA 432
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ FK + + F + L A G V F SM Y IEPS +HY+++V+
Sbjct: 433 IACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVD 492
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGR+G +E L FI+ + P +IW L + R H K+AK+AL+KLL+L+P G
Sbjct: 493 MLGRSGQLKEALRFIERM-PMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTG 551
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNE---ELTSE 273
Y+ G W IE++ +++ FVS + + +
Sbjct: 552 NYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDHKDSKA 611
Query: 274 VSDKLAEIEENMKELGFVLNRSLYQTKMK---------------AVALGLISFPHGMPTR 318
+ KL EI + G++ M+ A+A LI GM R
Sbjct: 612 ICLKLEEIMAGAVKQGYIPGTEWVLHNMEQEEKEDVLGSHGEKLALAFALICTSPGMTIR 671
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +CG HS ++ S I +RE++++D FHHFKDG CSC+D +
Sbjct: 672 IVKNLQVCGDCHSLMKYASKISQREIMLRDMKRFHHFKDGSCSCRDHW 719
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
+ LI+ ++ G +D A F PEKN +SWT ++ +G +AL +F
Sbjct: 285 STLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVR 344
Query: 145 MNPTTFRSALKAYALMGLVGEAYRL 169
N T SAL A A +G + R+
Sbjct: 345 PNAFTIVSALSACAKIGGLEAGLRI 369
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/410 (27%), Positives = 190/410 (46%), Gaps = 56/410 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
EI W+ ++ I A Y+ E+ +++Q + + +L +C N ++ G A
Sbjct: 259 EISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHA 318
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ + + +G L+++ ++CG++D F+ E+ +W +I HG +
Sbjct: 319 YLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAED 378
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL+LF Q N T L A A G V + R+F +M E Y ++P EHY MV
Sbjct: 379 ALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMV 438
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGR+G+F E + I + P K +W LL + R+HG+ LA+ LLEL+P
Sbjct: 439 DLLGRSGLFSEAEDLINSM-PMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNS 497
Query: 248 GMY---------VGCWIEIQNKIYEFVSNEELTS-------------------------- 272
G Y VG + ++ +KI + + N + +
Sbjct: 498 GRYVLLSNIYAKVGRFDDV-SKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQM 556
Query: 273 -EVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMP 316
E+ KL I+E ++ G + S Y ++ A+A GLI+ G
Sbjct: 557 KEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKR 616
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +C HSA + +S I +RE++V+D +HHFK+G CSCKD +
Sbjct: 617 IHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 91/213 (42%), Gaps = 22/213 (10%)
Query: 1 LKLCSLISDVEI-PWNLLLKACIKAKDYEMVHELLERIQLCCGFI-----DSYSICDILN 54
LK+ S I + + WN+++K C++ ++L + I + + ++ +
Sbjct: 87 LKVFSSIPNPNVFIWNIVIKGCLEN------NKLFKAIYFYGRMVIDARPNKFTYPTLFK 140
Query: 55 SCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLS 114
+C + G Q ++ K G+ S + + I + + G+++DA F S E + +
Sbjct: 141 ACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSG-ESDVVC 199
Query: 115 WTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174
W +I + G A LF + N ++ + A G +G+A +LF M
Sbjct: 200 WNTMIDGYLKCGVLEAAKGLFA----QMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMS 255
Query: 175 EVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK 207
E E +S MV+ AG ++E LE +
Sbjct: 256 -----ERDEISWSSMVDGYISAGRYKEALEIFQ 283
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +IN ++ G + DA F E++ +SW+ ++ ++ G EAL++F+ Q T
Sbjct: 232 NVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETR 291
Query: 145 MNPTTFRSALKAYALMGLVGEA 166
S L A + +G + +
Sbjct: 292 PGRFILSSVLAACSNIGAIDQG 313
>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 635
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 180/408 (44%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ ++ K+YE L R Q + +++ ++ +C N L G Q A
Sbjct: 229 VTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAV 288
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G S+ V + +++ ++CG + ++ + F EKN W IIS H P E
Sbjct: 289 ICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEV 348
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF+ Q N TF S L GLV E R F M Y + P+ HYS MV+
Sbjct: 349 MILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVD 408
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG+ E E IK I P IW +LL S RV+ +++LA+ A +KL EL+P G
Sbjct: 409 ILGRAGLLSEAYELIKSI-PFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAG 467
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEE---LTSE 273
+V WI+I++K++ F E E
Sbjct: 468 NHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIRE 527
Query: 274 VSDKLAEIEENMKELGF--VLNRSLYQTKMK-------------AVALGLISFPHGMPTR 318
+ L + ++ G+ + L+ ++ A+ GL+ P P R
Sbjct: 528 ICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVR 587
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +C H + S R ++V+D FHHF DG CSC D +
Sbjct: 588 IMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 40/154 (25%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF---KDKQWR 141
N LIN S+CG ++ A F E++ +SW +I + SEALD+F +++ ++
Sbjct: 100 NVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFK 159
Query: 142 YTSMNPTTFRSA--------------------------------LKAYALMGLVGEAYRL 169
++ ++ SA L YA G++ +A ++
Sbjct: 160 FSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQV 219
Query: 170 FLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVL 203
F SM+ + S +S MV + +EE L
Sbjct: 220 FESMQ-----DKSSVTWSSMVAGYVQNKNYEEAL 248
>gi|115438899|ref|NP_001043729.1| Os01g0651100 [Oryza sativa Japonica Group]
gi|113533260|dbj|BAF05643.1| Os01g0651100, partial [Oryza sativa Japonica Group]
Length = 503
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 176/377 (46%), Gaps = 61/377 (16%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
++ +++ IL C L +G Q A K L + P VG+ L+++ S+CG ++ A
Sbjct: 130 VNDFTVSCILRVCAAATLFELGAQVHARSIKTALNASPFVGSSLVSLYSKCGLVECAYQV 189
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F PE+N W ++A HGH + A F D Q N TF S + A + GLV
Sbjct: 190 FGEAPERNLGIWNAGLNASAQHGHTTAAFQRFMDMQNAGFRPNSITFLSLITACSHAGLV 249
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E R F M+E Y IEP EHY+ MV+ LGR G E L I+ + P + +W LL
Sbjct: 250 DEGKRYFSLMKE-YRIEPQAEHYAAMVDLLGRVGRISEALGLIESM-PMEPPEYVWGALL 307
Query: 224 LSSRV-------------------------------------HGDMKLAKYAL-DKLLEL 245
++ R+ H D LA+ A+ D +
Sbjct: 308 MACRMFKDADAAAIAAKRLFETGSRSSGAHMLLSSTYAAAGRHMDAALARKAMRDAGVRK 367
Query: 246 DPGMYVGCWIEIQNKIYEFVSN---EELTSEVSDKLAEIEENMKELGFVLNRSL------ 296
+ G+ W+E +++ FVSN ++E+ + L ++ E M+ G+V + S
Sbjct: 368 ETGL---SWLEAAGEVHTFVSNCRRHPRSNEIYNVLEKVGEKMEAAGYVADTSAVVKDVD 424
Query: 297 ---------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
Y ++ A+ LGL+ P G+P RV+K++ +C H+A +++S R ++++
Sbjct: 425 KDEKQATMRYHSERLAIGLGLLIVPEGVPIRVMKNLRVCDDCHNAVKYLSKCTGRIVILR 484
Query: 348 DPGSFHHFKDGKCSCKD 364
D FH F+DG CSC D
Sbjct: 485 DNRRFHRFEDGVCSCGD 501
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
VG+ ++++ ++CG + DA F P++N +SW+ +I + G S A+++F+
Sbjct: 68 VGSSVLDMYAKCGHLADARRLFDEMPKRNVVSWSALICGYADAGMHSAAMEIFR 121
>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Glycine max]
Length = 911
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/408 (26%), Positives = 185/408 (45%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ C + ++Y + ++Q +S +I +L +C P LL G + +
Sbjct: 505 VSWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRACAGPSLLKKGEEIHCF 564
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G + + LI++ S+ GK+ A F++ EK W ++ +GH E
Sbjct: 565 SMKHGFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEV 624
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LF + + TF + L GLV + ++ F SM+ Y I P+ EHYS MV+
Sbjct: 625 FTLFDNMCKTGIRPDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYSINPTIEHYSCMVD 684
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
LG+AG +E L+FI + P K IW +L + R+H D+K+A+ A L L+P
Sbjct: 685 LLGKAGFLDEALDFIHAM-PQKADASIWGAVLAACRLHKDIKIAEIAARNLFRLEPYNSA 743
Query: 248 ------GMY-------------------------VGCWIEIQNKIYEFVS---NEELTSE 273
+Y V WI+++ I+ F + + E
Sbjct: 744 NYVLMMNIYSTFERWGDVERLKESMTAMGVKIPNVWSWIQVRQTIHVFSTEGKSHPEEGE 803
Query: 274 VSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPTR 318
+ L ++ +K+LG+V + + L T+ A+ GL+ G P R
Sbjct: 804 IYFDLYQLISEIKKLGYVPDTNCVHQNIDDSEKEKVLLSHTEKLAMTYGLMKIKGGTPIR 863
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K+ +C H+A +++S RE+ ++D G FHHF +G+CSC D +
Sbjct: 864 VVKNTRICQDCHTAAKYISLARNREIFLRDGGRFHHFMNGECSCNDRW 911
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 75/148 (50%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ A ++++ +E EL R+Q +I +L +C LN G Q Y+
Sbjct: 200 WNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVI 259
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ G +S+ ++ N ++++ SR +++ A F ST + N SW IIS+ +G + A D
Sbjct: 260 RFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWD 319
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMG 161
LF++ + + T+ S L + L G
Sbjct: 320 LFREMESSSIKPDIITWNSLLSGHLLQG 347
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 82/205 (40%), Gaps = 1/205 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN LL + YE V + +Q DS SI L + + N+G + Y
Sbjct: 334 ITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHGY 393
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + L V L+++ + ++ A++ F T KN +W +IS G A
Sbjct: 394 IMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNA 453
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L + + T+ S + Y++ G EA + ++ + + P+ ++ M+
Sbjct: 454 EKLLIQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVINRIKSL-GLTPNVVSWTAMIS 512
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCP 216
+ + + L+F + + P
Sbjct: 513 GCCQNENYTDALQFFSQMQEENVKP 537
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
DS ++ +L CL + L +G + A + KRG + LIN+ +C ID A+
Sbjct: 129 FDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQV 188
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
F TP + W I+ A + +AL+L + Q
Sbjct: 189 FDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQ 224
>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 701
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 189/411 (45%), Gaps = 59/411 (14%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
+ DV + WN L+ K D EL R+ + D ++ +L +C L +G
Sbjct: 291 VKDV-VSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGA 349
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q+Y+ KRG + + VG LI + + CG + A F PEKN + T +++ HG
Sbjct: 350 TVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHG 409
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
EA+ +F + + + + F + L A + GLV E +F M Y +EP HY
Sbjct: 410 RGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHY 469
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPL--IWRTLLLSSRVHGDMKLAKYALDKLLE 244
S +V+ LGRAG +E I+ + KL P +W LL + R+H ++KLA + KL E
Sbjct: 470 SCLVDLLGRAGYLDEAYAVIENM---KLKPNEDVWTALLSACRLHRNVKLAVISAQKLFE 526
Query: 245 LDPGMYVG--C----------WIEIQN-------------KIYEFV-------------S 266
L+P G C W +++N Y FV +
Sbjct: 527 LNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDT 586
Query: 267 NEELTSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISF 311
+ E + ++ KL ++ E +K+ G+ + SL ++ A+A LI+
Sbjct: 587 SHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINT 646
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
G R+ K++ +CG H+ + +S + RE++++D FHHF+DG CSC
Sbjct: 647 GPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRDGLCSC 697
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 54/112 (48%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+++ +L +C + +L +G + A + GL VGN ++++ + G ++ A + F
Sbjct: 123 DNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVF 182
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
++ SW ++S V +G A ++F D + + TT + L A
Sbjct: 183 DRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSA 234
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNV 64
L+ D+ WN ++ +K + E+ ++ GF+ D ++ +L++C + + L V
Sbjct: 186 LVRDL-TSWNTMMSGFVKNGEARGAFEVFGDMRRD-GFVGDRTTLLALLSACGDVMDLKV 243
Query: 65 GTQAQAYMTKRGLISHPAVG---NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
G + Y+ + G G N +I++ C + A F+ K+ +SW +IS
Sbjct: 244 GKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISG 303
Query: 122 RVNHGHPSEALDLF 135
G +AL+LF
Sbjct: 304 YEKCGDAFQALELF 317
>gi|218188763|gb|EEC71190.1| hypothetical protein OsI_03082 [Oryza sativa Indica Group]
Length = 486
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 176/377 (46%), Gaps = 61/377 (16%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
++ +++ IL C L +G Q A K L + P VG+ L+++ S+CG ++ A
Sbjct: 113 VNDFTVSCILRVCAAATLFELGAQVHARSIKTALNASPFVGSSLVSLYSKCGLVECAYQV 172
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F PE+N W ++A HGH + A F D Q N TF S + A + GLV
Sbjct: 173 FGEAPERNLGIWNAGLNASAQHGHTTAAFQRFMDMQNAGFRPNSITFLSLITACSHAGLV 232
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E R F M+E Y IEP EHY+ MV+ LGR G E L I+ + P + +W LL
Sbjct: 233 DEGKRYFSLMKE-YRIEPQAEHYAAMVDLLGRVGRISEALGLIESM-PMEPPEYVWGALL 290
Query: 224 LSSRV-------------------------------------HGDMKLAKYAL-DKLLEL 245
++ R+ H D LA+ A+ D +
Sbjct: 291 MACRMFKDADAAAIAAKRLFETGSRSSGAHMLLSSTYAAAGRHMDAALARKAMRDAGVRK 350
Query: 246 DPGMYVGCWIEIQNKIYEFVSN---EELTSEVSDKLAEIEENMKELGFVLNRSL------ 296
+ G+ W+E +++ FVSN ++E+ + L ++ E M+ G+V + S
Sbjct: 351 ETGL---SWLEAAGEVHTFVSNCRRHPRSNEIYNVLEKVGEKMEAAGYVADTSAVVKDVD 407
Query: 297 ---------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
Y ++ A+ LGL+ P G+P RV+K++ +C H+A +++S R ++++
Sbjct: 408 KDEKQATMRYHSERLAIGLGLLIVPEGVPIRVMKNLRVCDDCHNAVKYLSKCTGRIVILR 467
Query: 348 DPGSFHHFKDGKCSCKD 364
D FH F+DG CSC D
Sbjct: 468 DNRRFHRFEDGVCSCGD 484
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
VG+ ++++ ++CG + DA F PE+N +SW+ +I + G S A+++F+
Sbjct: 51 VGSSVLDMYAKCGHLADARRLFDEMPERNVVSWSALICGYADAGMHSAAMEIFR 104
>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 755
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 107/380 (28%), Positives = 174/380 (45%), Gaps = 61/380 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L+ C N + L G Q + K G+++ VG L+++ ++CG ID A AF
Sbjct: 377 DLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAF 436
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P + +SWT +I+ HG +AL LF+D + N TF L A + GL
Sbjct: 437 LEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLAD 496
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK--GIVPGKLCPLIWRTL 222
EA F M++ Y+I+P +H++ +++ R G EE + + P + IW L
Sbjct: 497 EALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNE---TIWSML 553
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP----------GMYVGC------------------- 253
+ R HG L YA ++LL+L P M++
Sbjct: 554 IAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVG 613
Query: 254 ------WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGF-------------- 290
WI I+ K+Y F N++ + E+ L + +K LG+
Sbjct: 614 KLKDWSWISIKEKVYSFKPNDKSHCQSLEMYKLLETVLNEVKALGYEPIEDVEVIEKEEN 673
Query: 291 ---VLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
VL+ ++ ++ A+A GL++ P P RV+KS+ MC H+ RF+S + RE+V++
Sbjct: 674 EERVLSSTVLHSEKLAIAFGLLNLPTATPIRVVKSITMCRDCHNFIRFISLLKGREIVIR 733
Query: 348 DPGSFHHFKDGKCSCKDAYG 367
D H F +G CSC YG
Sbjct: 734 DSKQLHKFLNGYCSC-GGYG 752
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W LL ++ + +L ++ + +Y++ +LN+C + + G Q AY+
Sbjct: 133 WTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLI 192
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K + ++GN L + S+ +++ A AFK EK+ +SWT +IS+ ++G + +L
Sbjct: 193 KYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLS 252
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALM 160
F D N T S L A +M
Sbjct: 253 FFMDMLSDGMKPNEYTLTSVLSACCVM 279
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
I+S +L C++ L ++ K G V L+N+ S+CG ++ A
Sbjct: 62 IESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKV 121
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
F + P +N +WT +++ V + HP AL LF
Sbjct: 122 FDNLPRRNVNAWTTLLTGYVQNSHPLLALQLF 153
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 181/377 (48%), Gaps = 56/377 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ S+ +L++C G ++ K G + +V N LI+ S+CG + A L F
Sbjct: 265 NEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVF 324
Query: 105 KSTPEKNSL-SWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
++ P S+ SWT II+ HG EA+ LF + + + TF S L A + GLV
Sbjct: 325 QNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLV 384
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E LF M+ +Y IEP+ EHY MV+ GRA ++ EFI + P +IWRTLL
Sbjct: 385 EEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEM-PVSPNAIIWRTLL 443
Query: 224 LSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW----------------- 254
+ +HG++++A+ +L E+DP G +V G W
Sbjct: 444 GACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKK 503
Query: 255 ------IEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMK-ELGFVLN-RSLY------ 297
IEI IY FV+ E E+T E +KL EI ++ E G+ RS+
Sbjct: 504 TPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIMLRLRTEAGYAPQLRSVLHDIEEE 563
Query: 298 --------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
++ A A G+ P G R++K++ +CG H+ + +S + + E++V+D
Sbjct: 564 EKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDR 623
Query: 350 GSFHHFKDGKCSCKDAY 366
FH FKDG CSC+D +
Sbjct: 624 SRFHSFKDGFCSCRDYW 640
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 9/163 (5%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS++ L + N L G Q + + G +H VG LI++ + CG A F
Sbjct: 102 DSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVF 161
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
E N ++W +++A G A D+F R N T++ L YA G +G
Sbjct: 162 DEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVR----NLTSWNGMLAGYAKAGELG 217
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK 207
A R+F M E +S M+ G F+E F +
Sbjct: 218 LARRVFYEMP-----LRDEVSWSTMIVGFAHNGCFDEAFGFFR 255
>gi|222618959|gb|EEE55091.1| hypothetical protein OsJ_02835 [Oryza sativa Japonica Group]
Length = 575
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 176/377 (46%), Gaps = 61/377 (16%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
++ +++ IL C L +G Q A K L + P VG+ L+++ S+CG ++ A
Sbjct: 202 VNDFTVSCILRVCAAATLFELGAQVHARSIKTALNASPFVGSSLVSLYSKCGLVECAYQV 261
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F PE+N W ++A HGH + A F D Q N TF S + A + GLV
Sbjct: 262 FGEAPERNLGIWNAGLNASAQHGHTTAAFQRFMDMQNAGFRPNSITFLSLITACSHAGLV 321
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E R F M+E Y IEP EHY+ MV+ LGR G E L I+ + P + +W LL
Sbjct: 322 DEGKRYFSLMKE-YRIEPQAEHYAAMVDLLGRVGRISEALGLIESM-PMEPPEYVWGALL 379
Query: 224 LSSRV-------------------------------------HGDMKLAKYAL-DKLLEL 245
++ R+ H D LA+ A+ D +
Sbjct: 380 MACRMFKDADAAAIAAKRLFETGSRSSGAHMLLSSTYAAAGRHMDAALARKAMRDAGVRK 439
Query: 246 DPGMYVGCWIEIQNKIYEFVSN---EELTSEVSDKLAEIEENMKELGFVLNRSL------ 296
+ G+ W+E +++ FVSN ++E+ + L ++ E M+ G+V + S
Sbjct: 440 ETGL---SWLEAAGEVHTFVSNCRRHPRSNEIYNVLEKVGEKMEAAGYVADTSAVVKDVD 496
Query: 297 ---------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
Y ++ A+ LGL+ P G+P RV+K++ +C H+A +++S R ++++
Sbjct: 497 KDEKQATMRYHSERLAIGLGLLIVPEGVPIRVMKNLRVCDDCHNAVKYLSKCTGRIVILR 556
Query: 348 DPGSFHHFKDGKCSCKD 364
D FH F+DG CSC D
Sbjct: 557 DNRRFHRFEDGVCSCGD 573
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
VG+ ++++ ++CG + DA F P++N +SW+ +I + G S A+++F+
Sbjct: 140 VGSSVLDMYAKCGHLADARRLFDEMPKRNVVSWSALICGYADAGMHSAAMEIFR 193
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 33/185 (17%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLI-----SHPAVGNCLININSRCGKIDDADL 102
S+ D+L + L G Q ++ K G + SH + + L+ +RC D+
Sbjct: 17 SLADLLVALSAARALPKGQQLHGHLLKAGHLPATASSHAPIAHHLLTFYARCALPGDSLC 76
Query: 103 AFKSTPEKNS-LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR---------- 151
AF P S +W+ +IS+ +G P+ A D F+ + P T R
Sbjct: 77 AFLDLPAPPSPAAWSSLISSFSQNGLPAAAFDAFRRM---LAAGVPATDRNIPSAAKGTP 133
Query: 152 ---------SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV 202
S L YA G + +A RLF M + + +S ++ AGM
Sbjct: 134 FAGDVFVGSSVLDMYAKCGHLADARRLFDEMPKRNVVS-----WSALICGYADAGMHSAA 188
Query: 203 LEFIK 207
+E +
Sbjct: 189 MEIFR 193
>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 585
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 115/426 (26%), Positives = 198/426 (46%), Gaps = 67/426 (15%)
Query: 1 LKLCSLISDVEI-PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP 59
+KL + D ++ WN+L+ ++ +E ++ D S +L+S +
Sbjct: 167 VKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASL 226
Query: 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
L+ GT + K G + + + LI + ++CG + DA F+ + N +SWT +I
Sbjct: 227 AALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMI 286
Query: 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179
SA HG ++ ++LF+ + TF L A + G V E F SM++++ +
Sbjct: 287 SAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDM 346
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239
P EHY+ MV+ LGRAG +E FI+ + P K P +W LL + R +G++K+ + A
Sbjct: 347 NPGPEHYACMVDLLGRAGWLDEAKRFIESM-PMKPTPSVWGALLGACRKYGNLKMGREAA 405
Query: 240 DKLLEL---DPGMYV-------------------------------GC-WIEIQNKIYEF 264
++L E+ +PG YV GC WI+++N + F
Sbjct: 406 ERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVF 465
Query: 265 VSNEELTSEVSDKLAE------------------------IEENMKELGFVLNRSLYQTK 300
+++ S SD++ + +EEN +E G Y ++
Sbjct: 466 TAHDRSHSS-SDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGL-----WYHSE 519
Query: 301 MKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKC 360
A+A GL++ P P R+ K++ CG+ H+ + S I +RE++V+D FH F DG C
Sbjct: 520 KLALAFGLLTLPIDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFC 579
Query: 361 SCKDAY 366
SC D +
Sbjct: 580 SCGDYW 585
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 40 CCG-FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKID 98
C G + + ++ IL++ +++ G Q + + K G ++ VG L+++ ++C +
Sbjct: 3 CSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMH 62
Query: 99 DADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM-NPTTFRSALKAY 157
A F PE+N +SW +I ++ A+ +FKD T + N + S L A
Sbjct: 63 SAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSAC 122
Query: 158 ALMG 161
A MG
Sbjct: 123 ANMG 126
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
S+ +L++C N LN G Q + K GL+ V N L+++ +C D+ F+
Sbjct: 114 SVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCV 173
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLF 135
+++ ++W ++ V + EA + F
Sbjct: 174 GDRDVVTWNVLVMGFVQNDKFEEACNYF 201
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 108/410 (26%), Positives = 195/410 (47%), Gaps = 60/410 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ + D + L +R++ ++ +L +C LL +G Q +
Sbjct: 130 VVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVH 189
Query: 72 MTK--RGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ K + LI + N L+++ +CG ++DA+ F EK+ +SW+ +I+ +G+
Sbjct: 190 VLKYDQDLI----LNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSK 245
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
EAL LF+ + N T L A + GLV E F SM+E++ I+P EHY M
Sbjct: 246 EALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCM 305
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
++ LGRAG E ++ I + + + WR LL + RVH ++ +A +A ++L LDP
Sbjct: 306 IDLLGRAGRLSEAVDLINEM-ECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQD 364
Query: 248 -GMYV-------------------------------GC-WIEIQNKIYEFVSNEE---LT 271
G YV GC WIE+ +I+ F+ +
Sbjct: 365 AGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRSHPQI 424
Query: 272 SEVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMP 316
E++ +L ++ + +G+V + + Y ++ A+ GL+S P G
Sbjct: 425 REINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAIVFGLMSLPRGQT 484
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+ K++ +CG H + ++ + +R +V++DP +HHF+DG CSC D +
Sbjct: 485 IRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%)
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q + K GL S V + LI++ SR G++++A F + + W+ II+ +
Sbjct: 84 QLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNS 143
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
EAL LFK + TT S L+A
Sbjct: 144 DGDEALRLFKRMKRAGFLAQQTTLTSVLRA 173
>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 178/374 (47%), Gaps = 58/374 (15%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
S+ +L C N L +G Q ++K L LI++ +CG +D A F
Sbjct: 297 SLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEM 356
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP--TTFRSALKAYALMGLVGE 165
P K+ +SW +IS HG +AL LF DK R +M P TF + + A G V
Sbjct: 357 PRKDVISWNAMISGYAQHGAGRKALHLF-DKM-RNGTMKPDWITFVAVILACNHAGFVDL 414
Query: 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS 225
+ F SM++ + IE HY+ +++ LGRAG +E + IK + P K I+ TLL +
Sbjct: 415 GVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM-PFKPHAAIYGTLLGA 473
Query: 226 SRVHGDMKLAKYALDKLLELDPGMYVG--------------------------------- 252
R+H ++ LA++A LL LDP G
Sbjct: 474 CRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIP 533
Query: 253 --CWIEIQNKIYEFVSNEELTSEVSD---KLAEIEENMKELGFVLNRS------------ 295
WIEI++ +EF S++ L E++ KL E++ MK G+V +
Sbjct: 534 GYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKE 593
Query: 296 ---LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
L+ ++ A+A GL+ G P RV K++ +CG H A +F+S I +RE++V+D F
Sbjct: 594 KLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRF 653
Query: 353 HHFKDGKCSCKDAY 366
HHF++G CSC D +
Sbjct: 654 HHFRNGFCSCGDYW 667
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 15/164 (9%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN +L K A + HEL ++I DS S +I+ C L + G +A
Sbjct: 105 VTWNTMLSGYTKVAGKVKEAHELFDKIPEP----DSVSY-NIMLVCY---LRSYGVEAAL 156
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ + A N LI+ ++ G++ A F PEKN +SW+ +IS V HG
Sbjct: 157 AFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEA 216
Query: 131 ALDLFKDKQWRYTSMNPTTFRSA-LKAYALMGLVGEAYRLFLSM 173
A +L+K+ M +A L Y G V A R+F M
Sbjct: 217 AEELYKN-----VGMKSVVVETAMLTGYMKFGKVELAERIFQRM 255
>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 896
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 187/381 (49%), Gaps = 60/381 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
++ ++ +L C + G + AY + L S VG+ L+++ ++CG ++ + F
Sbjct: 517 NAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVF 576
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKD-----KQWRYTSMNPTTFRSALKAYAL 159
P KN ++W +I A HG EAL+LFK+ + N TF + A +
Sbjct: 577 NEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSH 636
Query: 160 MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPL-I 218
GL+ E LF M+ + +EP+ +HY+ +V+ LGRAG EE E + +P + +
Sbjct: 637 SGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVN-TMPAEFDKVGA 695
Query: 219 WRTLLLSSRVHGDMKLAKYALDKLLELDPGM---YV------------------------ 251
W +LL + R+H +++L + A LL L+P + YV
Sbjct: 696 WSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQ 755
Query: 252 -------GC-WIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRSLY--- 297
GC WIE ++++++F++ + + ++ L + E M++ G+V + S
Sbjct: 756 MGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHN 815
Query: 298 ------------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELV 345
++ A+A G+++ P G RV K++ +C H+A +F+S I+ERE++
Sbjct: 816 VDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREII 875
Query: 346 VKDPGSFHHFKDGKCSCKDAY 366
V+D FHHFK+G CSC D +
Sbjct: 876 VRDVRRFHHFKEGTCSCGDYW 896
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 4/149 (2%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL---LNVGTQ 67
++ WN + A + + +E E +Q+ + S+++ + +C N + L +G Q
Sbjct: 159 QVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQ 218
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
Y + G N L+ + ++ G++DD+ F+S +++ +SW +IS+
Sbjct: 219 LHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDR 277
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKA 156
SEAL F+ ++ T S L A
Sbjct: 278 FSEALAFFRLMVLEGVELDGVTIASVLPA 306
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Query: 14 WNLLLKACIK-AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN ++ + D + + +E I++ ++ ++ ++ +C++ + Y
Sbjct: 367 WNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYA 426
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K G V N L+++ SR GK+D ++ F S ++ +SW +I+ V G S AL
Sbjct: 427 VKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNAL 486
Query: 133 DLFKDKQ 139
L + Q
Sbjct: 487 VLLHEMQ 493
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 1/151 (0%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W L++ ++ D+ + + D+++ +L + L G Q A
Sbjct: 60 WVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAV 119
Query: 74 KRGLISHP-AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K G S V N L+N+ +CG I D F +++ +SW I+A +AL
Sbjct: 120 KFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQAL 179
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
+ F+ Q ++ T S A + +G++
Sbjct: 180 EAFRAMQMENMELSSFTLVSVALACSNLGVM 210
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
S + + WN ++ + ++ + + L +D +I +L +C + L+V
Sbjct: 256 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDV 315
Query: 65 GTQAQAYMTKRG-LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G + AY+ + LI + VG+ L+++ C +++ F + W +IS
Sbjct: 316 GKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYA 375
Query: 124 NHGHPSEALDLF 135
+G +AL LF
Sbjct: 376 RNGLDEKALILF 387
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 115/406 (28%), Positives = 191/406 (47%), Gaps = 56/406 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ ++ L +Q ++ S+ +L++C + L+ G A AY
Sbjct: 209 IAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAY 268
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + L +G LI++ ++CG ++ A F EKN +W+ I +G +
Sbjct: 269 IERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKC 328
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+LF + N TF S L+ +++GLV E + F SM +VY IEP EHY MV+
Sbjct: 329 LELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVD 388
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
GRAG +E L FI + P + W LL + +++ +M++ + A K++EL+ G
Sbjct: 389 LYGRAGHLDEALNFINSM-PVRPHVGAWGALLNACKIYRNMEMGELASRKIVELEAKNHG 447
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTSE 273
YV GC IE+ +++EF ++ +E
Sbjct: 448 AYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKSHPRYAE 507
Query: 274 VSDKLAEIEENMKELGFVLNRS----------------LYQTKMKAVALGLISFPHGMPT 317
+ L EI +K G+V N + ++ K+ A+A GLIS +P
Sbjct: 508 IQVMLGEISRRLKLSGYVANTNPVFFDIEEEEKEDALCMHSEKI-AIAFGLISLSPDVPI 566
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCK 363
R++K++ +C H A + +S RE+VV+D FHHF+DG+CSCK
Sbjct: 567 RIVKNLRVCWDCHDATKMISKAFNREIVVRDRNRFHHFRDGECSCK 612
>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 749
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/380 (28%), Positives = 174/380 (45%), Gaps = 61/380 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L+ C N + L G Q + K G+++ VG L+++ ++CG ID A AF
Sbjct: 371 DLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAF 430
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P + +SWT +I+ HG +AL LF+D + N TF L A + GL
Sbjct: 431 LEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLAD 490
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK--GIVPGKLCPLIWRTL 222
EA F M++ Y+I+P +H++ +++ R G EE + + P + IW L
Sbjct: 491 EALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNE---TIWSML 547
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP----------GMYVGC------------------- 253
+ R HG L YA ++LL+L P M++
Sbjct: 548 IAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVG 607
Query: 254 ------WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGF-------------- 290
WI I+ K+Y F N++ + E+ L + +K LG+
Sbjct: 608 KLKDWSWISIKEKVYSFKPNDKSHCQSLEMYKLLETVLNEVKALGYEPIEDVEVIEKEEN 667
Query: 291 ---VLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
VL+ ++ ++ A+A GL++ P P RV+KS+ MC H+ RF+S + RE+V++
Sbjct: 668 EERVLSSTVLHSEKLAIAFGLLNLPTATPIRVVKSITMCRDCHNFIRFISLLKGREIVIR 727
Query: 348 DPGSFHHFKDGKCSCKDAYG 367
D H F +G CSC YG
Sbjct: 728 DSKQLHKFLNGYCSC-GGYG 746
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W LL ++ + +L ++ + +Y++ +LN+C + + G Q AY+
Sbjct: 127 WTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLI 186
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K + ++GN L + S+ +++ A AFK EK+ +SWT +IS+ ++G + +L
Sbjct: 187 KYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLS 246
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALM 160
F D N T S L A +M
Sbjct: 247 FFMDMLSDGMKPNEYTLTSVLSACCVM 273
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
I+S +L C++ L ++ K G V L+N+ S+CG ++ A
Sbjct: 56 IESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKV 115
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
F + P +N +WT +++ V + HP AL LF
Sbjct: 116 FDNLPRRNVNAWTTLLTGYVQNSHPLLALQLF 147
Score = 37.7 bits (86), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ Y++ +L++C + L++G Q + K G S + N ++ + +CG + +A F
Sbjct: 259 NEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLF 318
Query: 105 KSTPEKNSLSWTFIISARVN-----------HGHPSEALDLFKDKQWRYTSMNPT--TFR 151
+ N ++W +I+ H S AL +F+ K +R + M P TF
Sbjct: 319 EGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQ-KLYR-SGMKPDLFTFS 376
Query: 152 SAL 154
S L
Sbjct: 377 SVL 379
>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Brachypodium distachyon]
Length = 646
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 117/410 (28%), Positives = 188/410 (45%), Gaps = 58/410 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN +L C + + L R+ + ++ +C N L +G Q AY
Sbjct: 240 ILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAY 299
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G + + + LI++ +CG + A F + +SWT +I HG EA
Sbjct: 300 VIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREA 359
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF + N TF + L A + GLV + ++ F SM + Y I PS EH++ + +
Sbjct: 360 LVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALAD 419
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPL--IWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
LGR G EE FI G+ K+ P +W TLL + +VH + LA+ K+ +L+P
Sbjct: 420 TLGRPGKLEEAYNFISGM---KIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRS 476
Query: 248 -GMYV-------------------------------GC-WIEIQNKIYEFVSNEE---LT 271
G ++ C WIE++NK + FV++++
Sbjct: 477 MGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWY 536
Query: 272 SEVSDKLAEIEENMKELGFVLNRS-LYQ--------------TKMKAVALGLISFPHGMP 316
+ D L E M G+V N ++Q ++ A+ G+IS P G
Sbjct: 537 ERIIDALNVFSEQMVRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPPGTT 596
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV+K++ +C H+ +F+S I+ RE+V++D FHHFKDG CSC D +
Sbjct: 597 IRVMKNLRVCVDCHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 63/145 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ C ++ + L+ + DS+++ +L + G + +
Sbjct: 139 VSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGF 198
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
T+ G VG+ LI++ + C + D + F + P ++++ W +++ +G EA
Sbjct: 199 ATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEA 258
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
L LF+ P TF S + A
Sbjct: 259 LGLFRRMLHSGIKPMPVTFSSLIPA 283
>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 118/416 (28%), Positives = 189/416 (45%), Gaps = 55/416 (13%)
Query: 2 KLCSLISDVEI-PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
KL I D + WN ++ + E + + +Q DS + L++C
Sbjct: 161 KLFDAIRDRSVVAWNAMISGYEQNGLAERGIGVYKEMQAAKAVPDSMTFVATLSACAQAG 220
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L++G + + + + +G+ L+N+ +RCG +D A F + E+N ++WT +I+
Sbjct: 221 ALDLGREVERRVVSERMDISVFLGSALVNMYARCGVVDKARRWFDALQERNVVTWTSMIA 280
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
HGH EA+ LF + N TF + L A A GLV E F M+ VY +
Sbjct: 281 GYGMHGHGREAIKLFHLMRCEGPPPNHVTFVAVLSACAHAGLVMEGRDAFACMKRVYGLV 340
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
P EHY MV+ GRAG+ +E ++FI +PG+ P +W +L + ++H + L +
Sbjct: 341 PRVEHYCSMVDMFGRAGLLDEAMQFISDYMPGEPGPEVWTAVLGACKMHKNFNLGVEVAE 400
Query: 241 KLLELDP----------GMY------------------------VG-CWIEIQNKIYEFV 265
+L+ L+P +Y +G IE+ + F
Sbjct: 401 RLIALEPENPSYHVLLSNIYALSGKMHHVEKVRNTMIKRRLKKQIGFSLIELGGTSHLFR 460
Query: 266 SNEE---LTSEVSDKLAEIEENMKELGFV---------------LNRSLYQTKMKAVALG 307
E+ T+E+ L E+ + G++ Y ++ AVA G
Sbjct: 461 MGEKSHPQTTEIYHYLEELIHRITAAGYMPETESVLHELEEEEREGALRYHSEKLAVAYG 520
Query: 308 L-ISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
L +S P RVIK++ +CG H A +FMS + RE+VV+D FHHFKDGKCSC
Sbjct: 521 LMMSVGSTTPIRVIKNLRICGDCHLAIKFMSAVENREIVVRDKHRFHHFKDGKCSC 576
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 51/118 (43%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
S++ + +C + L G A+ G S V L+ + S+CG++ A
Sbjct: 103 FSSFTFTAVAKACADLSALRTGAAIHAHSILLGFGSDRFVLTALVVLYSKCGQLGVARKL 162
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
F + +++ ++W +IS +G + ++K+ Q + TF + L A A G
Sbjct: 163 FDAIRDRSVVAWNAMISGYEQNGLAERGIGVYKEMQAAKAVPDSMTFVATLSACAQAG 220
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 117/409 (28%), Positives = 186/409 (45%), Gaps = 54/409 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
EI W+ ++ IK Y+ E+ +Q + + +L +C N L+ G A
Sbjct: 258 EISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHA 317
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ +G L+++ ++CG++D A F+ +K +W +I HG +
Sbjct: 318 YVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAED 377
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A++LF Q + N T L A A G+V E R+F SMEEVY IEP EHY +V
Sbjct: 378 AIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVV 437
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG+ E E + + P + +W LL + R HGD++L + LLEL+P
Sbjct: 438 DLLGRAGLLGEAEEVMYSM-PMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNS 496
Query: 248 GMY---------VGCWIEIQN-----------------------KIYEFVSNEELTSEVS 275
G Y G W ++ N ++EF + ++
Sbjct: 497 GRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMK 556
Query: 276 DKLAEIEENMKEL---GFVLNRS---------------LYQTKMKAVALGLISFPHGMPT 317
+ ++ +K L GF N S Y ++ A+A GLI+ G
Sbjct: 557 NIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHSEKLAIAFGLINTKPGTTI 616
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ MC HSA + +S + +RE++V+D +HHFK G CSCKD +
Sbjct: 617 HVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 46/252 (18%), Positives = 101/252 (40%), Gaps = 20/252 (7%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
+N+++K C++ + ++ + + ++ + +C G Q A++
Sbjct: 98 FNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVI 157
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K+GL + + I + G+++ A + + + +I + G A +
Sbjct: 158 KQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKE 217
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF W N ++ + A G++ EA LF M+ E +E +S M++
Sbjct: 218 LF----WSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMK-----EKNEISWSAMIDGY 268
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGC 253
+ G ++E LE + ++ P R +LSS + A L LD G ++
Sbjct: 269 IKGGYYKEALEVFNVMQREEIRP---RKFVLSSVL--------AACANLGALDQGRWIHA 317
Query: 254 WIEIQNKIYEFV 265
++ + ++ V
Sbjct: 318 YVNNNSNSFDAV 329
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 92/210 (43%), Gaps = 38/210 (18%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ----- 139
N +++ ++CG I++A F EKN +SW+ +I + G+ EAL++F Q
Sbjct: 231 NVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIR 290
Query: 140 -----------------------W--RYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174
W Y + N +F + L AL+ + + RL ++ +
Sbjct: 291 PRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVL-GTALVDMYAKCGRLDMAWD 349
Query: 175 EVYHIEPSEEH-YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL-LLSSRVHGDM 232
+E E ++ M+ LG G E+ +E + K P L +LS+ H M
Sbjct: 350 VFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGM 409
Query: 233 ---KLAKY-ALDKLLELDPGM-YVGCWIEI 257
L + +++++ ++PGM + GC +++
Sbjct: 410 VDEGLRIFNSMEEVYGIEPGMEHYGCVVDL 439
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 111/408 (27%), Positives = 190/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ ++ + L +Q+ D +++ IL +C + L +G + Y
Sbjct: 306 VSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTY 365
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + + VGN LI++ +CG + A FK K+ +WT +I +GH EA
Sbjct: 366 IDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEA 425
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L +F + + + T+ L A G+V + F+SM + I+P+ HY MV+
Sbjct: 426 LAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVD 485
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
LGRAG EE E I + P K ++W +LL + RVH +++LA+ A ++LEL+P
Sbjct: 486 LLGRAGRLEEAHEVIVNM-PVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGA 544
Query: 248 ------GMYVGC--W-----------------------IEIQNKIYEFVSNEELTSEVSD 276
+Y C W +E+ +YEFV+ ++ + +
Sbjct: 545 VYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKE 604
Query: 277 KLAEIEENMKEL---GFVLNRS--------------LYQTKMK-AVALGLISFPHGMPTR 318
A++E M++L G+ + S LY+ K A+A LIS G+ R
Sbjct: 605 IYAKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIR 664
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ MC H + +S REL+V+D FHHF+ G CSC + +
Sbjct: 665 IVKNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 16 LLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY---- 71
L+L AC K KD E + + I G I ++ IL + L + G +A
Sbjct: 213 LMLSACSKLKDLEGGKHIYKYIN---GGIVERNL--ILENVLIDMFAACGEMDEAQSVFD 267
Query: 72 -MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
M R +IS ++ NI G+ID A F PE++ +SWT +I + E
Sbjct: 268 NMKNRDVISWTSIVTGFANI----GQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIE 323
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGL--VGEAYRLFLSMEEV 176
AL LF++ Q + T S L A A +G +GE + ++ +
Sbjct: 324 ALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSI 371
>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
Length = 820
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 115/426 (26%), Positives = 198/426 (46%), Gaps = 67/426 (15%)
Query: 1 LKLCSLISDVEI-PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP 59
+KL + D ++ WN+L+ ++ +E ++ D S +L+S +
Sbjct: 402 VKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASL 461
Query: 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
L+ GT + K G + + + LI + ++CG + DA F+ + N +SWT +I
Sbjct: 462 AALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMI 521
Query: 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179
SA HG ++ ++LF+ + TF L A + G V E F SM++++ +
Sbjct: 522 SAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDM 581
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239
P EHY+ MV+ LGRAG +E FI+ + P K P +W LL + R +G++K+ + A
Sbjct: 582 NPGPEHYACMVDLLGRAGWLDEAKRFIESM-PMKPTPSVWGALLGACRKYGNLKMGREAA 640
Query: 240 DKLLEL---DPGMYV-------------------------------GC-WIEIQNKIYEF 264
++L E+ +PG YV GC WI+++N + F
Sbjct: 641 ERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVF 700
Query: 265 VSNEELTSEVSDKLAE------------------------IEENMKELGFVLNRSLYQTK 300
+++ S SD++ + +EEN +E G Y ++
Sbjct: 701 TAHDRSHSS-SDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGL-----WYHSE 754
Query: 301 MKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKC 360
A+A GL++ P P R+ K++ CG+ H+ + S I +RE++V+D FH F DG C
Sbjct: 755 KLALAFGLLTLPIDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFC 814
Query: 361 SCKDAY 366
SC D +
Sbjct: 815 SCGDYW 820
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 40 CCG-FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKID 98
C G + + ++ IL++ +++ G Q + + K G ++ VG L+++ ++C +
Sbjct: 238 CSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMH 297
Query: 99 DADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM-NPTTFRSALKAY 157
A F PE+N +SW +I ++ A+ +FKD T + N + S L A
Sbjct: 298 SAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSAC 357
Query: 158 ALMG 161
A MG
Sbjct: 358 ANMG 361
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ S+ +L++C N LN G Q + K GL+ V N L+++ +C D+ F
Sbjct: 346 NEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLF 405
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
+ +++ ++W ++ V + EA + F
Sbjct: 406 QCVGDRDVVTWNVLVMGFVQNDKFEEACNYF 436
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE-- 109
+LN+ + L TQ + S P + N LIN+ ++CG ++ A L F T
Sbjct: 148 LLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHF 207
Query: 110 KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
K ++WT +I+ + +AL LF + N TF S L A A +V +L
Sbjct: 208 KTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQL 267
>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
Length = 562
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 194/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ + +E V +L +++ D ++ +++S L G Q A
Sbjct: 156 VAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAE 215
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G S AV + LI++ S+CG ++D+ A +S+ W+ +I+A HG EA
Sbjct: 216 AIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEA 275
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF+ + N TF S L A + GL + F M E Y ++P EHY+ +V+
Sbjct: 276 VHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVD 335
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGR+G +E I+ + P + +IW+TLL + R+H + +A +++L L+P
Sbjct: 336 LLGRSGCLDEAEAMIRSM-PLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQDSA 394
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEE---LTSE 273
YV W+E++N++++F ++ ++ E
Sbjct: 395 TYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEE 454
Query: 274 VSDKLAEIEENMKELGFV---------------LNRSLYQTKMKAVALGLISFPHGMPTR 318
+ L E+ E MK G+V N + ++ A+A GL++ P G P R
Sbjct: 455 IDLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAIAFGLMNIPPGSPIR 514
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ +C H A + +S I RE++V+D FHHFK GKCSC D +
Sbjct: 515 VMKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGDYW 562
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 53/123 (43%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ I+ + E L + D +++ +L C G Q AY+
Sbjct: 57 WNAMVSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVL 116
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G + VG+ L ++ + G + + + K+ +N ++W +I+ +GH LD
Sbjct: 117 KYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLD 176
Query: 134 LFK 136
L+
Sbjct: 177 LYN 179
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/407 (26%), Positives = 188/407 (46%), Gaps = 56/407 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L ++ L + +Q + ++ +L +C L G +Y
Sbjct: 222 VAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMWVHSY 281
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ RG+ +G L+++ S+CG + + F++ E+N +WT +S +G E
Sbjct: 282 VCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEEC 341
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+LFK + N TF + L+ ++ GLV E F SM++ + +EP EHY MV+
Sbjct: 342 LELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVD 401
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD----- 246
GRAG ++ ++FI + P + +W LL +SR+H ++ L K+A+ KL E++
Sbjct: 402 LYGRAGRLDDAVDFINSM-PVEPHEGVWGALLNASRIHNNVDLGKHAMHKLTEIESKNDA 460
Query: 247 -----PGMYV------------------------GC-WIEIQNKIYEFV---SNEELTSE 273
+Y GC IE+ K++EF + +
Sbjct: 461 AHVLLSNIYAESHNWKGVSKVRNMMKSKGVKKMPGCSAIEVDGKVHEFFVGSKSHPRYKD 520
Query: 274 VSDKLAEIEENMKELGFVLNR----------------SLYQTKMKAVALGLISFPHGMPT 317
+ LAE+ ++ G+ N SL+ K+ A+A GLI+ P
Sbjct: 521 IQTMLAEMSHRLRLQGYAANTKEVLFDIEEEEKEGAISLHSEKL-ALAFGLITLPEDTVI 579
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
R++K++ +C H + +S + +RE+V++D FHHFK G CSC+D
Sbjct: 580 RIVKNLRVCKDCHDYTKLISKVFDREIVMRDRNRFHHFKHGACSCRD 626
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR 151
S G +D A F P+++ ++W +++ V G EAL LF + Q +++ T
Sbjct: 201 SAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLV 260
Query: 152 SALKAYALMG 161
S L A A MG
Sbjct: 261 SVLTACAQMG 270
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 111/376 (29%), Positives = 177/376 (47%), Gaps = 56/376 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ +L +C + L++G Y TK G + V N LI++ +CG +++A F
Sbjct: 141 NEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVF 200
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
E+ +SW+ +I+ HG EAL LF + N TF L A + MGL+
Sbjct: 201 YEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLID 260
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E R F SM Y + P EHY +V+ RAG+ EE EFI + P K ++W LL
Sbjct: 261 EGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSM-PIKPNGVVWGALLG 319
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
+VH ++ LA+ A+ L ELDP G YV
Sbjct: 320 GCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWEDAARVRKLMKDRGVKKT 379
Query: 252 GCW--IEIQNKIYEFVSNEELTSEVSDKLAEIEE----NMKELGFVLNRSLYQTKMK--- 302
W I + ++EFV+ ++ + D + +I + MK G+ S+ M+
Sbjct: 380 SGWSSITVNGVVHEFVAGDQTHPQAED-ICKIWDKLLVKMKRRGYAPKTSVVLLDMEEKE 438
Query: 303 ------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
AV GL++ P G P R++K++ +C H+A + +S I+ RE++V+D
Sbjct: 439 KEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHAALKIISGIVSREIIVRDRN 498
Query: 351 SFHHFKDGKCSCKDAY 366
FH F+DG+CSC+D +
Sbjct: 499 RFHCFRDGQCSCRDFW 514
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+++ +L +CL + G K G S+ + N ++N+ CG++ DA L F
Sbjct: 9 DTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLLF 68
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ P++++++W +I+ G A F R + N ++ S + + G
Sbjct: 69 EKMPQRDAVTWNIVIAQLAKRGDIDGAYGFF----LRMPNKNVRSWTSMISGFVQCGKPN 124
Query: 165 EAYRLFLSMEEVYHIEPSE 183
EA LF+ +E+ + P+E
Sbjct: 125 EAIDLFMKLED-EAVRPNE 142
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 12/151 (7%)
Query: 15 NLLLKACIKAKDY---EMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +LKAC+K D + +H L +++ I ++ C G A
Sbjct: 14 SFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLC--------GEMGDAM 65
Query: 72 MTKRGLISHPAVG-NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ + AV N +I ++ G ID A F P KN SWT +IS V G P+E
Sbjct: 66 LLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNE 125
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
A+DLF + N T S L A A +G
Sbjct: 126 AIDLFMKLEDEAVRPNEVTVVSVLAACADLG 156
>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
Length = 734
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 198/412 (48%), Gaps = 63/412 (15%)
Query: 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQ 69
++ WN ++ C + E L R+QL DS+++ ++ P L ++ Q
Sbjct: 327 TQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVI-----PALADISDPLQ 381
Query: 70 A-----YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
A Y + L V LI++ ++CG+++ A + F S E++ ++W +I +
Sbjct: 382 ARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGS 441
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
HG A++LF++ + N TTF S L A + GLV E F SM+E Y +EP E
Sbjct: 442 HGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGME 501
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
HY MV+ LGRAG +E FI+ + P ++ +L + ++H +++LA+ + K+ E
Sbjct: 502 HYGTMVDLLGRAGKLDEAWAFIQKM-PMDPGLSVYGAMLGACKLHKNVELAEESAQKIFE 560
Query: 245 LDP--GMY----------VGCW-----------------------IEIQNKIYEFVS--- 266
L P G+Y W I+++N+I+ F S
Sbjct: 561 LGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGST 620
Query: 267 NEELTSEVSDKLAEIEENMKELGFV------------LNRSLYQTKMK--AVALGLISFP 312
N + E+ +LA++ E +K +G+V + L T + A+A GLI
Sbjct: 621 NHQQAKEIYSRLAKLIEEIKAVGYVPDTDSIHDVEDDVKAQLLNTHSEKLAIAFGLIRTA 680
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G ++ K++ +C H+A + +S + RE++++D FHHFKDGKCSC D
Sbjct: 681 PGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGD 732
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 1/160 (0%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCG-FIDSYSICDILNSCLNPILLNVGTQAQ 69
+ WN L+ + M E++ R+Q G DS ++ +L +C N L +A
Sbjct: 125 RVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAH 184
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
A+ + GL V +++ +CG I A + F P KNS+SW +I +G
Sbjct: 185 AFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSR 244
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
EAL LF + + +AL+A +G + E R+
Sbjct: 245 EALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRV 284
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 60/147 (40%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + D L R+ + S+ L +C L+ G +
Sbjct: 228 VSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHEL 287
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + GL S+ +V N LI + S+C ++D A F + +SW +I +G +A
Sbjct: 288 LVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDA 347
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
+ LF Q + T S + A A
Sbjct: 348 VRLFTRMQLENVKPDSFTLVSVIPALA 374
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 111/372 (29%), Positives = 181/372 (48%), Gaps = 54/372 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S ++ IL +C + L G + ++ + G V N L+++ +CG + A L F
Sbjct: 451 NSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLF 510
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
PEK+ +SWT +I+ HG+ SEA+ F + + + +F S L A + GL+
Sbjct: 511 DMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLD 570
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F M IEP EHY+ +V+ L RAG + +FIK ++P + IW LL
Sbjct: 571 EGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIK-MMPIEPDATIWGALLC 629
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
R++ D+KLA+ + + EL+P G YV
Sbjct: 630 GCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKN 689
Query: 252 -GC-WIEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGF-------VLNRSLYQT 299
GC WIEI+ K++ FV S+ L +++ L + MKE G ++ +
Sbjct: 690 PGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEK 749
Query: 300 KMK--------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+M A+A G++S P G RV K++ +CG H +FMS +++R+++++D
Sbjct: 750 EMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNR 809
Query: 352 FHHFKDGKCSCK 363
FHHFKDG CSC+
Sbjct: 810 FHHFKDGSCSCR 821
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++I IL++C LL G Y+ + + S V N L+++ ++CG + DA F
Sbjct: 351 DIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVF 410
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
K+ +SW +I + P+EAL+LF + Q+ + N T L A A
Sbjct: 411 SEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYN-SKPNSITMACILPACA 463
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 69/152 (45%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + E +L E++ L D ++ ++ C N +L +G Y
Sbjct: 217 ISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGY 276
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + NCL+++ S+ G ++ A F++ E++ +SWT +I+ G +
Sbjct: 277 AIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMS 336
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
+ LF + + S + T + L A A GL+
Sbjct: 337 VRLFHEMEKEGISPDIFTITTILHACACTGLL 368
>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 734
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 198/412 (48%), Gaps = 63/412 (15%)
Query: 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQ 69
++ WN ++ C + E L R+QL DS+++ ++ P L ++ Q
Sbjct: 327 TQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVI-----PALADISDPLQ 381
Query: 70 A-----YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
A Y + L V LI++ ++CG+++ A + F S E++ ++W +I +
Sbjct: 382 ARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGS 441
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
HG A++LF++ + N TTF S L A + GLV E F SM+E Y +EP E
Sbjct: 442 HGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGME 501
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
HY MV+ LGRAG +E FI+ + P ++ +L + ++H +++LA+ + K+ E
Sbjct: 502 HYGTMVDLLGRAGKLDEAWAFIQKM-PMDPGLSVYGAMLGACKLHKNVELAEESAQKIFE 560
Query: 245 LDP--GMY----------VGCW-----------------------IEIQNKIYEFVS--- 266
L P G+Y W I+++N+I+ F S
Sbjct: 561 LGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGST 620
Query: 267 NEELTSEVSDKLAEIEENMKELGFV------------LNRSLYQTKMK--AVALGLISFP 312
N + E+ +LA++ E +K +G+V + L T + A+A GLI
Sbjct: 621 NHQQAKEIYSRLAKLIEEIKAVGYVPDTDSIHDVEDDVKAQLLNTHSEKLAIAFGLIRTA 680
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G ++ K++ +C H+A + +S + RE++++D FHHFKDGKCSC D
Sbjct: 681 PGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGD 732
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 1/159 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCG-FIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN L+ + M E++ R+Q G DS ++ +L +C N L +A A
Sbjct: 126 VAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHA 185
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ + GL V +++ +CG I A + F P KNS+SW +I +G E
Sbjct: 186 FAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSRE 245
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
AL LF + + +AL+A +G + E R+
Sbjct: 246 ALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRV 284
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 60/147 (40%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + D L R+ + S+ L +C L+ G +
Sbjct: 228 VSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHEL 287
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + GL S+ +V N LI + S+C ++D A F + +SW +I +G +A
Sbjct: 288 LVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDA 347
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
+ LF Q + T S + A A
Sbjct: 348 VRLFTRMQLENVKPDSFTLVSVIPALA 374
>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 758
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 105/391 (26%), Positives = 181/391 (46%), Gaps = 56/391 (14%)
Query: 32 ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91
+L ++ L D +++ +L+ C + + G Q A K G +S V LI++
Sbjct: 367 KLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMY 426
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR 151
S+CG I+ A AF + ++WT +I+ HG +AL +F+D N TF
Sbjct: 427 SKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFV 486
Query: 152 SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVP 211
L A + G+V +A F M++ Y I+P+ +HY MV+ R G E+ L FIK +
Sbjct: 487 GVLSACSHAGMVSQALNYFEIMQKKYKIKPAMDHYECMVDMFVRLGRLEQALNFIKKM-N 545
Query: 212 GKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP----------GMYVGC-------- 253
+ IW + + HG+++L YA ++LL L P MY+
Sbjct: 546 YEPSEFIWSNFIAGCKSHGNLELGFYAAEQLLSLKPKDPETYVLLLNMYLSAERFEDVSR 605
Query: 254 -----------------WIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVL- 292
WI I++K+Y F +N + +S + L ++ +K +G+ +
Sbjct: 606 VRKMMEEEKVGKLKDWSWISIKDKVYSFKTNGKTHPQSSLICKSLEDLLAKVKNVGYEML 665
Query: 293 ----------------NRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFM 336
+ ++Y ++ A+ GL + P+ P RV+KS +C SH+ +++
Sbjct: 666 ESVEISDEEEEEEKTSSPNIYHSEKLAITFGLENLPNSSPIRVVKSTLICRDSHNFIKYV 725
Query: 337 STIIERELVVKDPGSFHHFKDGKCSCKDAYG 367
ST+ RE++VKD H F +G+CSC + G
Sbjct: 726 STLAGREIIVKDSKRLHKFANGECSCGNFGG 756
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ ++ + + + + + Y++ +L++C + L +G Q AY
Sbjct: 134 VAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQFHAY 193
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + +VG+ L ++ S+CG+++DA F EKN +SWT +SA ++G P +
Sbjct: 194 IIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGAPVKG 253
Query: 132 LDLFKDKQWRYTSMNPTTFRSAL 154
L LF + N T SAL
Sbjct: 254 LRLFVEMIAVDIKPNEFTLTSAL 276
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 72/155 (46%), Gaps = 5/155 (3%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L CL+ + ++ K G + V + L+N+ ++CG ++DA F + +N
Sbjct: 73 LLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLRRN 132
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA-YALMGL-VGEAYRL 169
++WT ++ V + P A+ +F++ + + + T + L A +L L +G+ +
Sbjct: 133 VVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQFHA 192
Query: 170 FLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
++ YH++ S + + G E+ L+
Sbjct: 193 YIIK---YHVDFDASVGSALCSLYSKCGRLEDALK 224
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 112/376 (29%), Positives = 179/376 (47%), Gaps = 61/376 (16%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ L +C +++G Y+ K+G+ + + LI++ S+CG ++ A F S
Sbjct: 367 TLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSV 426
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
++ W+ +I+ HGH A+DLF Q N TF + L A + GLV E
Sbjct: 427 ERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGR 486
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKG--IVPGKLCPLIWRTLLLS 225
F M VY + P +HY+ MV+ LGRAG EE +E I+ IVP +W LL +
Sbjct: 487 LFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSA---SVWGALLGA 543
Query: 226 SRVHGDMKLAKYALDKLLELDP---GMYV---------GCW------------------- 254
R++G+++LA+ A +LLE D G YV G W
Sbjct: 544 CRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEP 603
Query: 255 ----IEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGFVLNRS------------ 295
IE+ I+EF+ ++ L++E+ KL EI +K G+V + S
Sbjct: 604 GCSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMK 663
Query: 296 -----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
L+ K+ A+A GLI P R++K++ +CG HS + +S + R+++++D
Sbjct: 664 EHALNLHSEKL-AIAYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRY 722
Query: 351 SFHHFKDGKCSCKDAY 366
FHHF G CSC D +
Sbjct: 723 RFHHFSGGNCSCMDYW 738
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 113/270 (41%), Gaps = 45/270 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ ++ E +L +R+++ + ++ +L++C I L G A Y
Sbjct: 198 VSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDY 257
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTF-------------- 117
+ + G+ + + N ++++ +CG ++DA F EK+ +SWT
Sbjct: 258 IERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAA 317
Query: 118 -----------------IISARVNHGHPSEALDLFKDKQW-RYTSMNPTTFRSALKAYAL 159
+IS+ +G P EAL +F++ Q + T N T S L A A
Sbjct: 318 RRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQ 377
Query: 160 MGL--VGEAYRLFLSMEEV---YHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL 214
+G +G +++ + + +HI S +++ + G E+ LE + +
Sbjct: 378 LGAMDLGGWIHVYIKKQGIKLNFHITTS------LIDMYSKCGHLEKALEVFYSVERRDV 431
Query: 215 CPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+W ++ +HG + A K+ E
Sbjct: 432 --FVWSAMIAGLAMHGHGRAAIDLFSKMQE 459
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 67/162 (41%), Gaps = 9/162 (5%)
Query: 4 CSLISDVEIP----WNLLLKACIKAKDYEMVHELLERIQL---CCGFIDSYSICDILNSC 56
C + + P WN L++A A + + LL IQ+ F +SY+ ++ +
Sbjct: 84 CKVFDQIPRPNLYTWNTLIRAF--ASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAA 141
Query: 57 LNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWT 116
L G + K S + N LI+ S G +D A L F EK+ +SW
Sbjct: 142 TEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWN 201
Query: 117 FIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+IS V G P EAL LFK + N T L A A
Sbjct: 202 SMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACA 243
>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
Length = 582
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 116/404 (28%), Positives = 190/404 (47%), Gaps = 50/404 (12%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + V EL + ++ D ++ +L+SC + L+VG + +
Sbjct: 180 ITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERK 239
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M G S+P + N L+N+ +RCG + A F P K+ +SWT II HG A
Sbjct: 240 MEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVA 299
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF + + T F S L A + GL + F ME Y + P EHYS MV+
Sbjct: 300 VGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVD 359
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG E E I+ + + +W LL + ++H +++LA+ A ++++EL+P G
Sbjct: 360 LLGRAGRLNEARELIESMQV-RADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTG 418
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVS---NEELTSE 273
YV GC ++E + +++ F + N T+E
Sbjct: 419 YYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNE 478
Query: 274 VSDKLAEIEENMKELGFV-----------LNRSLYQTKMKAVALGLISFPHGMPTRVIKS 322
+ KL E+E +K+L LN ++ AVA L++ +IK+
Sbjct: 479 IYKKLNELENLVKDLDGCKKNDHERREEYLNSMGVHSEKLAVAFALLNTRKETEIIIIKN 538
Query: 323 VGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ +CG H + +S I++R+ VV+D FHHFK+G CSCK+ +
Sbjct: 539 LRICGDCHLFIKLVSKIVDRQFVVRDATRFHHFKNGFCSCKEYW 582
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 106/254 (41%), Gaps = 16/254 (6%)
Query: 4 CSLISDV-----EIPWNLLLKACIKA--KDYEMVHELLERIQLCCGF------IDSYSIC 50
CSLI + E P + L C + Y + + + + L C I+ ++
Sbjct: 58 CSLIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTML 117
Query: 51 DILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK 110
++ C P L +G + K GL +VGNCL+ + + G+ID F P K
Sbjct: 118 GLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRK 177
Query: 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF 170
++W +I+ +G + L+L+K+ + + +P T L + A +G + +
Sbjct: 178 GLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVE 237
Query: 171 LSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
ME + + + +V R G ++ + G+ P K + W ++ +HG
Sbjct: 238 RKMEG-FGFSSNPFLNNALVNMYARCGNLKKARDIFDGM-PVK-SVVSWTAIIGGYGMHG 294
Query: 231 DMKLAKYALDKLLE 244
++A D+++
Sbjct: 295 QGEVAVGLFDEMIR 308
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 182/408 (44%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN+++ Y+ L + + IL SC + +++G AY
Sbjct: 328 ISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAY 387
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K ++ LI++ ++CG I A F K+ SW +I HG +A
Sbjct: 388 INKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKA 447
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+LF N TF L A GLV + F SM + Y I P +HY M++
Sbjct: 448 FELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMID 507
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DPG 248
LGRAG+FEE ++ + K IW +LL + R HG ++L + ++L EL +PG
Sbjct: 508 LLGRAGLFEEAESLLQNM-EVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPG 566
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNEELTSEVSD 276
YV G W IE+ N ++EF+ +++ + D
Sbjct: 567 AYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSED 626
Query: 277 ---KLAEIEENMKELGFVLNRS--LY-------------QTKMKAVALGLISFPHGMPTR 318
L E++E +K GFV + S LY ++ A+A GLIS G P R
Sbjct: 627 IYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIR 686
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+IK++ +C HSA + +S I RE++ +D FHHFKDG CSC D +
Sbjct: 687 IIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 734
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 112/249 (44%), Gaps = 13/249 (5%)
Query: 5 SLISDVEIP----WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
SL + +E P WN +++ + + R+ +SY+ +L SC
Sbjct: 84 SLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLA 143
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
+ G Q A++ K G +S + LIN+ ++ G++++A L F + ++++S+T +I+
Sbjct: 144 SAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIA 203
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
G+ A LF + + + ++ + + YA MG EA LF M + ++
Sbjct: 204 GYALWGYMDRARQLFDEMPVK----DVVSWNAMIAGYAQMGRSKEALLLFEDMRKA-NVP 258
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP---LIWRTLLLSSRVHGDMKLAKY 237
P+E ++ A ++ + I LC L+ + + S+ GD++ A+
Sbjct: 259 PNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKC-GDLQTARE 317
Query: 238 ALDKLLELD 246
D +LE D
Sbjct: 318 LFDDMLERD 326
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 1/157 (0%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
+ DV + WN ++ + + L E ++ + +I +L++C L++G
Sbjct: 223 VKDV-VSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGN 281
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
++++ RGL S+ + N LI++ S+CG + A F E++ +SW +I +
Sbjct: 282 SMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMC 341
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
EAL LF++ TF S L + A +G +
Sbjct: 342 SYKEALALFREMLASGVEPTEITFLSILPSCAHLGAI 378
>gi|297736881|emb|CBI26082.3| unnamed protein product [Vitis vinifera]
Length = 568
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 176/341 (51%), Gaps = 24/341 (7%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ + + ++N+C + L G A A + +RG S+ V + L+++ ++CG I +D F
Sbjct: 229 NHFMLASVINACASLGRLVSGKVAHAAVIRRGHESNDVVASALVDMYAKCGCIGYSDKVF 288
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ P+ + + +T +I +G +LD+FK+ R N TF L A + GLV
Sbjct: 289 RRIPDPSVIPYTSMIVGAAKYGLGKFSLDIFKEMLDRRIKPNDVTFVGVLHACSHSGLVD 348
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI-VPGKLCPLIWRTLL 223
+ SM + + + P +HY+ +V+ LGR G +E + K I V L+W TLL
Sbjct: 349 DGLEYLHSMHKKHGVVPDTKHYTCVVDMLGRTGRLDEAHQLAKSIQVEPDQGALLWGTLL 408
Query: 224 LSSRVHGDMKLAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNE----ELTSEVSDKLA 279
+SR++G + +A A L+E + + I++ Y F + + SEV+ L
Sbjct: 409 SASRLYGRVDIAVEASKWLIESNQQVAAA---YIRDSAYVFYAGDVSLCARGSEVASLLR 465
Query: 280 EIEENMKELGFV-LNRSLYQTKMK---------------AVALGLISFPHGMPTRVIKSV 323
E+E MKE G+V +R L ++ A+A GLIS P G+ RV+K++
Sbjct: 466 ELERRMKERGYVGGSRGLVSIDVEEEAKEEIVGLHSERLALAFGLISIPKGVTIRVMKNL 525
Query: 324 GMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
MC H A + +S I+ER+ VV+D FHHF++G C+C+D
Sbjct: 526 RMCRDCHEAFKLISEIVERDFVVRDVNRFHHFENGSCTCRD 566
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
++++ ++N+C L G + +++ G+ + V + LI++ +C +DDA F
Sbjct: 127 NAFTFATVVNACSMLADLRTGQKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRVF 186
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKD-KQWRYTSMNPTTFRSALKAYALMG 161
+N +SWT +I+A + AL LF++ +S N S + A A +G
Sbjct: 187 DGMDYRNVVSWTSMITAYGQNALGECALQLFREFNGLPLSSPNHFMLASVINACASLG 244
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 182/375 (48%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ +L++C L G +Y+ G+ + VG LI++ S+CG ++DA L F
Sbjct: 71 NEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVF 130
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ K+ ++W ++ HG +AL LFK+ TF L A + GLV
Sbjct: 131 ERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVS 190
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E ++ F SM++ Y IEP EHY MV LGRAG EE E +K + + P++W TLL
Sbjct: 191 EGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQ-DPVLWGTLLG 249
Query: 225 SSRVHGDMKLAKYALDKLLE---LDPGMYV---------GCW------------------ 254
+ R+HG++ L + + L+ + G YV G W
Sbjct: 250 ACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFEKE 309
Query: 255 -----IEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGF------VLN------- 293
IE+ NK++EF++ + + E+ + L EI +K G+ VL+
Sbjct: 310 PGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLEDAQK 369
Query: 294 -RSL-YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
RSL ++ A+A GLI+ G +++K++ +C H+ + +S I R++V++D
Sbjct: 370 ERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKVVMRDRNR 429
Query: 352 FHHFKDGKCSCKDAY 366
FHHF +G CSC D +
Sbjct: 430 FHHFVNGLCSCGDYW 444
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 7/159 (4%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M ++ L+S A+ C ++ G ID+A + F E++++ W +I HG P+E
Sbjct: 1 MPEKSLVSLTAMITCY----AKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEG 56
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF+ N T + L A G + E R S E I + + +++
Sbjct: 57 LLLFRQMLNAKVRPNEVTVLAVLSACGQTGAL-ETGRWVHSYIENNGIGINVRVGTSLID 115
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
+ G E+ + I + + W ++++ +HG
Sbjct: 116 MYSKCGSLEDARLVFERISNKDV--VAWNSMVVGYAMHG 152
>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 196/408 (48%), Gaps = 57/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERI--QLCCGFIDSYSICDILNSCLNPILLNVGTQAQ 69
+ W +++ + D ELL + + C ++++I L +C + L +G Q
Sbjct: 441 VTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIH 500
Query: 70 AYMTKRGLISHPA-VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
AY + + P V NCLI++ ++CG I DA L F + KN ++WT +++ HG+
Sbjct: 501 AYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYG 560
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
EAL +F + + ++ T L A + G++ + F M+ V+ + P EHY+
Sbjct: 561 EEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYAC 620
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL--- 245
+V+ LGRAG L I+ + P + P++W L R+HG ++L +YA +K+ EL
Sbjct: 621 LVDLLGRAGRLNAALRLIEEM-PMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASN 679
Query: 246 DPGMYV-------------------------------GC-WIE-IQNKIYEFVSN----- 267
G Y GC W+E I+ FV +
Sbjct: 680 HDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPH 739
Query: 268 -EELTSEVSDKLAEIEE--NMKELGFVLNRS--------LYQTKMK-AVALGLISFPHGM 315
+E+ + D + I++ + E GF L+ L++ K A+A G+++ P G
Sbjct: 740 AKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGA 799
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCK 363
R+ K++ +CG H+A +MS II+ +++++D FHHFK+G CSCK
Sbjct: 800 AIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCK 847
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 81/157 (51%), Gaps = 3/157 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERI--QLCCGFIDSYSICDILNSCLNPILLNVGTQAQ 69
+ WN ++++ K ++ E+ R+ + C D+ ++ ++L C + ++G Q
Sbjct: 194 VSWNSIIESYAKLGKPKVALEMFSRMTNEFGCR-PDNITLVNVLPPCASLGTHSLGKQLH 252
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ +I + VGNCL+++ ++CG +D+A+ F + K+ +SW +++ G
Sbjct: 253 CFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFE 312
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
+A+ LF+ Q M+ T+ +A+ YA GL EA
Sbjct: 313 DAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEA 349
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+Y+ + +C + G A A G IS+ VGN L+ + SRC + DA F
Sbjct: 126 DNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVF 185
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
+ +SW II + G P AL++F
Sbjct: 186 DEMSVWDVVSWNSIIESYAKLGKPKVALEMF 216
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 48 SICDILNSCLNPILLNVGTQAQAY-------MTKRGLISHPAVGNCLININSRCGKIDDA 100
++ +L+ C + L G + Y + K G V N LI++ ++C K+D A
Sbjct: 367 TLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTA 426
Query: 101 DLAFKS-TP-EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
F S +P E++ ++WT +I HG ++AL+L + P F
Sbjct: 427 RAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAF 478
>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Brachypodium distachyon]
Length = 580
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 116/416 (27%), Positives = 188/416 (45%), Gaps = 55/416 (13%)
Query: 2 KLCSLISDVEI-PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
KL I D + WN ++ + E E+ + +++ DS + L++C
Sbjct: 161 KLFDAIRDKNVVAWNAMISGYEQNGLAEQGIEVYKEMKVAKAVPDSMTFVATLSACAQAG 220
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L++G + + + + +G+ L+N+ +RCG +D A F E+N ++WT +I+
Sbjct: 221 ALDLGREVERRIVSERMDISVFLGSALVNMYARCGVVDKARQWFDVLQERNVVTWTSMIA 280
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
HGH EA+ L+ + + N TF + L A A GL+ E F M+ VY +
Sbjct: 281 GYGMHGHGHEAIKLYHLMRCKGPPPNDVTFVAVLSACAHAGLITEGRDAFACMKRVYGLA 340
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
P EHY MV+ GRAG EE ++FI+ +PG P +W +L + ++H + L +
Sbjct: 341 PRVEHYCSMVDMYGRAGRLEEAMQFIRDSMPGDPGPEVWTAILGACKMHKNFSLGVEVAE 400
Query: 241 KLLELDP-----------------GMY-----------------VG-CWIEIQNKIYEFV 265
+L+ L+P MY +G IE+ + F
Sbjct: 401 RLIRLEPENPSYHVLLSNIYALSGKMYHVEKVRNTMIKRRLKKQIGYSLIELGGTSHLFR 460
Query: 266 SNE---ELTSEVSDKLAEIEENMKELGFV---------------LNRSLYQTKMKAVALG 307
E + T E+ L E+ + G++ Y ++ AVA G
Sbjct: 461 MGEKSHQKTREIYQYLEELVHRISAAGYMPETESVLHELEEEEREGALRYHSEKLAVAYG 520
Query: 308 L-ISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
L +S P RVIK++ +C H A +FMS + RE++V+D FHHFKDGKCSC
Sbjct: 521 LMMSAGSTTPLRVIKNLRICSDCHLAIKFMSAVENREIIVRDKHRFHHFKDGKCSC 576
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
S++ + +C + L G A+ G S V L+ + S+CG++ A
Sbjct: 103 FSSFAFTAVAKACADLSALRTGMTVHAHSILLGFGSDRFVLTALVVLYSKCGRLPVARKL 162
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
F + +KN ++W +IS +G + ++++K+ + + TF + L A A G
Sbjct: 163 FDAIRDKNVVAWNAMISGYEQNGLAEQGIEVYKEMKVAKAVPDSMTFVATLSACAQAG 220
>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Brachypodium distachyon]
Length = 654
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 178/376 (47%), Gaps = 60/376 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S +I +LN+C L+ G AY+ +RG S +V N L+ + RCG ++ F
Sbjct: 281 NSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIF 340
Query: 105 KSTP-EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
K ++ +SW +IS HG EA+ +F++ S + TF S L A + GLV
Sbjct: 341 KWIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLV 400
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKG--IVPGKLCPLIWRT 221
E LF SM E Y + P EHY+ MV+ LGRAG +E +E I+ I P P +W
Sbjct: 401 NEGKMLFESMVE-YGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPS---PQVWGA 456
Query: 222 LLLSSRVHGDMKLAKYALDKLLELDP---GMYV--------------------------- 251
LL + R+HG ++ A+ A L +L+P G YV
Sbjct: 457 LLGACRIHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQVGVLKELLEEHAL 516
Query: 252 ----GC-WIEIQNKIYEFVSNEELTSEVSDKLAEIEE---NMKELGFVLNRSLY------ 297
GC WIE++ K++ F S + V A I E MK G+V + +
Sbjct: 517 EKVTGCSWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVAQMKNQGYVPDTGIVLYDIEG 576
Query: 298 ---------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
++ AVA GLI+ G R+ K++ +C HS +F+S ERE+VV+D
Sbjct: 577 EEKERILIGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKFISKFTEREIVVRD 636
Query: 349 PGSFHHFKDGKCSCKD 364
FHHF+DG CSC D
Sbjct: 637 VNRFHHFRDGVCSCGD 652
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQ-----AYMTKRGLISHPAVGNCLININSRCGKID 98
+DSYS L +C+ + A+ A+ +RG H V LI+ ++ G +
Sbjct: 172 VDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLIDCYAKLGIVR 231
Query: 99 DADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKA 156
A+ F + PE+N +SW+ +I + P++A++LFKD + P T S L A
Sbjct: 232 YAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSITIVSVLNA 291
Query: 157 YA 158
A
Sbjct: 292 CA 293
>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 110/374 (29%), Positives = 178/374 (47%), Gaps = 58/374 (15%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ +L++C + N G ++ L + VG LI++ ++CG + + + F+
Sbjct: 192 TVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEI 251
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
EKN +W +IS +G AL F + TF L A GLV E
Sbjct: 252 REKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGR 311
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK--GIVPGKLCPLIWRTLLLS 225
F+SM++ + ++P EHY MV+ LGRAG+ EE LE I+ I P P+IWR LL +
Sbjct: 312 WQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPD---PIIWRALLCA 368
Query: 226 SRVHGDMKLAKYALDKLLELDPG---MYV------------------------------- 251
RVHG+ KL +Y + +L+EL+P YV
Sbjct: 369 CRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVP 428
Query: 252 GC-WIEIQNKIYEFVSNEELTSE---VSDKLAEIEENMKELGFVLNRS------------ 295
GC IEI N +YEFV++ + E + +L + + +KE G+V
Sbjct: 429 GCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKE 488
Query: 296 ---LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
+Y ++ A+A GL++ P R++K++ +C H + +S + +R +VV+D F
Sbjct: 489 HSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRF 548
Query: 353 HHFKDGKCSCKDAY 366
HHF +G CSC+D +
Sbjct: 549 HHFYEGFCSCRDYW 562
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 40/92 (43%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS + +L + VG + + G I L+++ C I DA F
Sbjct: 88 DSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLF 147
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
PE+N+++W +I+ ++ +A+D F+
Sbjct: 148 DEMPERNAVTWNALITGYTHNRKFVKAIDAFR 179
>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
Length = 818
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 109/411 (26%), Positives = 199/411 (48%), Gaps = 57/411 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQA 70
I WN ++ ++ ++ + G D+ + +L +C + L+ A
Sbjct: 409 ICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHA 468
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+++ L S+ V N LIN+ +RCG +++A+ F + EK +SWT +++A +G +E
Sbjct: 469 QISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAE 528
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
ALDLF++ + T+ S L G + + +R F M E++ + P+ +H++ MV
Sbjct: 529 ALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMV 588
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGR+G + E ++ + P + P+ W T L + R+HG ++L + A +++ ELDP
Sbjct: 589 DLLGRSGRLFDAKELLESM-PFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSST 647
Query: 248 -------GMYV--GCW-----------------------IEIQNKIYEFVSNEEL---TS 272
+Y G W IE+ K++EF S + T
Sbjct: 648 APYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTD 707
Query: 273 EVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISF-PHGMP 316
E+ ++L + M+ G+V + LY ++ A+A GL+S G P
Sbjct: 708 EICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEP 767
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHF-KDGKCSCKDAY 366
RV+K++ +C H+A +F++ I R+++++D FH F DGKCSC D +
Sbjct: 768 IRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 89/191 (46%), Gaps = 1/191 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN+++ ++ D+ EL +++ + + IL +C + L G ++
Sbjct: 274 VSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSH 333
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ +RGL S AV L+N+ ++CG +++A F + +++++W+ +I A ++G+ +A
Sbjct: 334 ILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDA 393
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
K R S + + + + Y G A ++F M ++P + ++E
Sbjct: 394 RKARKVFD-RLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLE 452
Query: 192 ALGRAGMFEEV 202
A G EV
Sbjct: 453 ACASLGRLSEV 463
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 104/253 (41%), Gaps = 11/253 (4%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
SL + E WN ++ A ++ D+ + + ++ C +S + ++++ P +L
Sbjct: 167 SLQTRDETSWNAVILAHSQSGDWSGALRIFKEMK-CDMKPNSTTYINVISGFSTPEVLPE 225
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G + A + G S V LIN+ +CG +A F +++ +SW +I V
Sbjct: 226 GRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQ 285
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
+G EAL+L++ TF S L A + + + + RL S ++
Sbjct: 286 NGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQG-RLVHSHILERGLDSEVA 344
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG---DMKLAKYALDK 241
+ +V + G EE + + + W TL+ + +G D + A+ D+
Sbjct: 345 VATALVNMYAKCGSLEEARKVFNAMKNRD--AVAWSTLIGAYASNGYGKDARKARKVFDR 402
Query: 242 LLELDPGMYVGCW 254
L D CW
Sbjct: 403 LGSRD----TICW 411
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 4/158 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A + L R+ L D + +L +C + L G +
Sbjct: 76 VSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS---LAQGREIHNR 132
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ GL S ++ N L+ + +R G + DA F+S ++ SW +I A G S A
Sbjct: 133 VFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGA 192
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
L +FK+ + N TT+ + + ++ ++ E ++
Sbjct: 193 LRIFKEMKCDMKP-NSTTYINVISGFSTPEVLPEGRKI 229
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 39/159 (24%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTP--EKNSLSWTFIISARVNHGHPSEALDLFKDKQW 140
VGN LI++ +C + DA F+S ++N +SW +I+A +GH +EAL L+
Sbjct: 44 VGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNL 103
Query: 141 RYTSMNPTTFRSALKA--------------------------------YALMGLVGEAYR 168
+ + TF S L A YA G VG+A R
Sbjct: 104 QGLGTDHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKR 163
Query: 169 LFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK 207
+F S++ E ++ ++ A ++G + L K
Sbjct: 164 MFQSLQ-----TRDETSWNAVILAHSQSGDWSGALRIFK 197
>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 110/374 (29%), Positives = 178/374 (47%), Gaps = 58/374 (15%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ +L++C + N G ++ L + VG LI++ ++CG + + + F+
Sbjct: 192 TVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEI 251
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
EKN +W +IS +G AL F + TF L A GLV E
Sbjct: 252 REKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGR 311
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK--GIVPGKLCPLIWRTLLLS 225
F+SM++ + ++P EHY MV+ LGRAG+ EE LE I+ I P P+IWR LL +
Sbjct: 312 WQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPD---PIIWRALLCA 368
Query: 226 SRVHGDMKLAKYALDKLLELDPG---MYV------------------------------- 251
RVHG+ KL +Y + +L+EL+P YV
Sbjct: 369 CRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVP 428
Query: 252 GC-WIEIQNKIYEFVSNEELTSE---VSDKLAEIEENMKELGFVLNRS------------ 295
GC IEI N +YEFV++ + E + +L + + +KE G+V
Sbjct: 429 GCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKE 488
Query: 296 ---LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
+Y ++ A+A GL++ P R++K++ +C H + +S + +R +VV+D F
Sbjct: 489 HSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRF 548
Query: 353 HHFKDGKCSCKDAY 366
HHF +G CSC+D +
Sbjct: 549 HHFYEGFCSCRDYW 562
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 40/92 (43%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS + +L + VG + + G I L+++ C I DA F
Sbjct: 88 DSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLF 147
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
PE+N+++W +I+ ++ +A+D F+
Sbjct: 148 DEMPERNAVTWNALITGYTHNRKFVKAIDAFR 179
>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
Length = 886
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 108/419 (25%), Positives = 202/419 (48%), Gaps = 64/419 (15%)
Query: 12 IPWNLLLKACIKAKDYE----MVHELL-------ERIQLCCGFIDSYSICDILNSCLNPI 60
+ WN ++ + ++ +E M+H++ ER +S ++ IL SC
Sbjct: 468 VTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALS 527
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L G + AY K L + AVG+ L+++ ++CG + + F P +N ++W I+
Sbjct: 528 ALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVM 587
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
A HG+ +A+D+ + + N TF S A + G+V E ++F +M++ Y +E
Sbjct: 588 AYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVE 647
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
PS +HY+ +V+ LGRAG +E + I I W +LL + R+H ++++ + A
Sbjct: 648 PSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQ 707
Query: 241 KLLELDPGM---YV-------------------------------GC-WIEIQNKIYEFV 265
L++L+P + YV GC WIE +++++FV
Sbjct: 708 NLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFV 767
Query: 266 ---SNEELTSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALG 307
S+ + ++ L + E M++ G++ + S ++ A+A G
Sbjct: 768 AGDSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKEILLCGHSEKLAIAFG 827
Query: 308 LISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+++ G RV K++ +C H A +F+S +++RE++++D FHHFK+G CSC D +
Sbjct: 828 ILNTSPGTIIRVAKNLRVCNDCHLATKFISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 1/143 (0%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYM 72
WN ++ + + E L ++ G + +S ++ ++ +C+ + ++
Sbjct: 368 WNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFV 427
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
KRGL V N L+++ SR GKID A F +++ ++W II+ V +AL
Sbjct: 428 VKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDAL 487
Query: 133 DLFKDKQWRYTSMNPTTFRSALK 155
+ Q + R +LK
Sbjct: 488 LMLHKMQILERKASERASRVSLK 510
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L + + + + E L + L D ++I +L +C + +L G + AY
Sbjct: 264 VTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAY 323
Query: 72 MTKRG-LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K G L + VG+ L+++ C ++ F ++ W +I+ + + E
Sbjct: 324 ALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEE 383
Query: 131 ALDLF 135
AL LF
Sbjct: 384 ALLLF 388
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGL-ISHPAVGNCLININSRCGKIDDADLA 103
D+++ +L + + +++G Q A++ K G + V N L+N+ +CG
Sbjct: 92 DNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 151
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
F E+N +SW +IS+ + AL+ F+
Sbjct: 152 FDRISERNQVSWNSLISSLCSFEKWEMALEAFR 184
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 118/412 (28%), Positives = 191/412 (46%), Gaps = 58/412 (14%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
++ W+ ++ +E +Q + S+ +L++C L G
Sbjct: 234 DVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHG 293
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST-PEKNSLSWTFIISARVNHGHPS 129
++ K GL +V N L++ S+CG + A L F+ E+N +SWT +++A HGH
Sbjct: 294 FIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGE 353
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
EA+ +F + + F S L A + GLV + F M+ +Y+IEPS EHY M
Sbjct: 354 EAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCM 413
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG- 248
V+ GRAG ++ EF+ + P +IWRTLL + +HGD+KLA+ ++L ELDP
Sbjct: 414 VDLYGRAGQLQKAYEFVCQM-PIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNN 472
Query: 249 -----------MYVGCW-----------------------IEIQNKIYEFVSNE---ELT 271
G W IE+ +Y F++ ++T
Sbjct: 473 SSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKIT 532
Query: 272 SEVSDKLAEIEENMK-------ELGFVLNR----------SLYQTKMKAVALGLISFPHG 314
E KL EI ++ E+G VL+ S++ K+ AVA G+ G
Sbjct: 533 EEAYKKLKEIIRRLRVEGGYVPEIGRVLHDIEEEEKEGSVSVHSEKL-AVAFGIARLCKG 591
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C H+ + +S I + E+VV+D FH FKDG CSC+D +
Sbjct: 592 RTIRIVKNLRICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRDYW 643
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 9/163 (5%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS+S I+ + N + VG Q GL +H VG LI++ CG + A F
Sbjct: 105 DSFSFAFIVKAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVF 164
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
PE N+++W +++A G +LF R N ++ L Y G +
Sbjct: 165 DEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVR----NLMSWNVMLAGYTKAGELE 220
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK 207
A +FL M + +S M+ G FEE F +
Sbjct: 221 LAREMFLEMP-----MKDDVSWSTMIVGFAHNGYFEEAFSFFR 258
>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
Length = 597
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 114/412 (27%), Positives = 191/412 (46%), Gaps = 63/412 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICD------ILNSCLNPILLNVG 65
+ WN+L+ + + + +L E ++ DS S D +L +C + L+ G
Sbjct: 188 VAWNVLITCYARNRRTKDALKLFEEMR----GKDSESEPDDVTCILLLQACSSLGALDFG 243
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Q AY + G V N LI + RCG +D A F TP+K+ ++WT +IS +
Sbjct: 244 EQVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAAN 303
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
G ++A+ +F++ + + TF L A + GLV E +R F M Y ++P+ H
Sbjct: 304 GFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRH 363
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
Y +V+ +GRAG+ +E EF+ + IWRTLL + R+HG + L + + L+EL
Sbjct: 364 YGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNLIEL 423
Query: 246 ---DPGMYV---------GCW-----------------------IEIQNKIYEFVSNEEL 270
G YV G W +E ++EF+++++
Sbjct: 424 KAQQAGDYVLLLNTYAAVGEWSKVSEIRKLMQEEGIQTTPGCTTVEHNGTVHEFIADDDA 483
Query: 271 TS---EVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFP 312
E+ + L+EI + ++ G+V N S Y ++ A+A L+ P
Sbjct: 484 HPRKVEIYENLSEIYKQLRIAGYVPNVSSELHDLDSEGKESALTYHSEKLAIAFALLVTP 543
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
P R+ K++ +C H+ + S I R ++V+D FHHF+ GKCSC D
Sbjct: 544 QHRPIRLAKNLRVCVDCHNFTKMFSAIYRRIVIVRDRTRFHHFQGGKCSCND 595
>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Glycine max]
Length = 591
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 111/419 (26%), Positives = 202/419 (48%), Gaps = 67/419 (15%)
Query: 14 WNLLLKACIKA-------KDYEMVHELLERIQLCCGF------IDSYSICDILNSCLNPI 60
WN +L A ++ +E LE + L C + ++ ++++C N
Sbjct: 174 WNTMLAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLG 233
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L+ G A Y+ + L + VG L+++ S+CG ++ A F ++++ + +I
Sbjct: 234 ALSQGAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIG 293
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
HGH ++AL+L+++ + + T + A + GLV E +F SM+ V+ +E
Sbjct: 294 GFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGME 353
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
P EHY +++ LGRAG +E E ++ + P K ++WR+LL ++++HG++++ + AL
Sbjct: 354 PKLEHYGCLIDLLGRAGRLKEAEERLQDM-PMKPNAILWRSLLGAAKLHGNLEMGEAALK 412
Query: 241 KLLELDP---GMYV---------GCW-----------------------IEIQNKIYEFV 265
L+EL+P G YV G W +EI ++EF+
Sbjct: 413 HLIELEPETSGNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFL 472
Query: 266 SNEE---LTSEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALG 307
+ ++ + E+ K+ EI + E G S Y ++ A+A
Sbjct: 473 TGDKAHPFSKEIYSKIGEINRRLLEYGHKPRTSEVLFDVEEEDKEDFLSYHSERLAIAFA 532
Query: 308 LISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
LI+ MP R+IK++ +CG H+ + +S +R+++V+D FHHFKDG CSC D +
Sbjct: 533 LIASSSSMPIRIIKNLRVCGDCHAITKLISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591
>gi|115487662|ref|NP_001066318.1| Os12g0181900 [Oryza sativa Japonica Group]
gi|77553160|gb|ABA95956.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648825|dbj|BAF29337.1| Os12g0181900 [Oryza sativa Japonica Group]
gi|125578708|gb|EAZ19854.1| hypothetical protein OsJ_35439 [Oryza sativa Japonica Group]
Length = 584
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/416 (28%), Positives = 190/416 (45%), Gaps = 55/416 (13%)
Query: 2 KLCSLISDVEI-PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
KL I D + WN ++ + E E+ +Q+ DS + L++C
Sbjct: 165 KLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYREMQVAQVVPDSATFVATLSACAQAG 224
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L++G + + + + +G+ L+N+ +RCG + A F E+N ++WT +I+
Sbjct: 225 ALDLGREVERRIVSDQMDVSVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIA 284
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
HGH EA+ LF + + N TF + L A A GLV E F SM+ VY +
Sbjct: 285 GYGMHGHGREAIKLFHLMRREGPTPNDVTFVAVLAACAHAGLVNEGRNAFDSMKRVYGLV 344
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
P EHY MV+ GRAG+ ++ ++FI +P + P +W +L + ++H + L +
Sbjct: 345 PRAEHYCSMVDMYGRAGLLDDAMQFICDSIPEEPGPEVWTAMLGACKMHKNFNLGVEVAE 404
Query: 241 KLLELDP----------GMY------------------------VG-CWIEIQNKIYEFV 265
+L+ L+P +Y +G IE+ + F
Sbjct: 405 RLIALEPENPSHRVLLSNIYALSGKMNHVEKVRNVMIKRRLKKQIGYSLIELGGTSHLFR 464
Query: 266 SNE---ELTSEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALG 307
E + T E+ L E+ + + G+V Y ++ AVA G
Sbjct: 465 MGEKSHQQTREIYRYLEELIHRISDAGYVPETDSVLHELEEEEREVALRYHSEKLAVAYG 524
Query: 308 L-ISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
L +S P RVIK++ +CG H A +FMS++ RE++V+D FHHFKDGKCSC
Sbjct: 525 LMMSSGSTAPIRVIKNLRICGDCHLAIKFMSSVESREIIVRDKHRFHHFKDGKCSC 580
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G A+ G S V L+ + S+CG++ A F + +++ ++W +IS
Sbjct: 125 LRTGMAVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISG 184
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+G A++++++ Q + TF + L A A G
Sbjct: 185 YEQNGLAERAIEVYREMQVAQVVPDSATFVATLSACAQAG 224
>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
Length = 611
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/412 (27%), Positives = 191/412 (46%), Gaps = 63/412 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICD------ILNSCLNPILLNVG 65
+ WN+L+ + + + +L E ++ DS S D +L +C + L+ G
Sbjct: 202 VAWNVLITCYARNRRTKDALKLFEEMR----GKDSESEPDDVTCILLLQACSSLGALDFG 257
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Q AY + G V N LI + RCG +D A F TP+K+ ++WT +IS +
Sbjct: 258 EQVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAAN 317
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
G ++A+ +F++ + + TF L A + GLV E +R F M Y ++P+ H
Sbjct: 318 GFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRH 377
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
Y +V+ +GRAG+ +E EF+ + IWRTLL + R+HG + L + + L+EL
Sbjct: 378 YGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNLIEL 437
Query: 246 ---DPGMYV---------GCW-----------------------IEIQNKIYEFVSNEEL 270
G YV G W +E ++EF+++++
Sbjct: 438 KAQQAGDYVLLLNTYAAVGEWSKVSEIRKLMQEEGIQTTPGCTTVEHNGTVHEFIADDDA 497
Query: 271 TS---EVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFP 312
E+ + L+EI + ++ G+V N S Y ++ A+A L+ P
Sbjct: 498 HPRKVEIYENLSEIYKQLRIAGYVPNVSSELHDLDSEGKESALTYHSEKLAIAFALLVTP 557
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
P R+ K++ +C H+ + S I R ++V+D FHHF+ GKCSC D
Sbjct: 558 QHRPIRLAKNLRVCVDCHNFTKMFSAIYRRIVIVRDRTRFHHFQGGKCSCND 609
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 187/409 (45%), Gaps = 61/409 (14%)
Query: 12 IPWNLLL----KACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQ 67
I WN ++ K C + + + LLE + D ++ +L +C + + G +
Sbjct: 464 ISWNTIIGGYSKNCYANEALSLFNLLLEEKRFS---PDERTVACVLPACASLSAFDKGRE 520
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
Y+ + G S V N L+++ ++CG + A + F K+ +SWT +I+ HG
Sbjct: 521 IHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGF 580
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
EA+ LF + + +F S L A + GLV E +R F M IEP+ EHY+
Sbjct: 581 GKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 640
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
+V+ L R G + FI+ + P IW LL R+H D+KLA+ +K+ EL+P
Sbjct: 641 CIVDMLARTGDLIKAYRFIENM-PIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEP 699
Query: 248 ---GMYV-------------------------------GC-WIEIQNKIYEFVSNEELTS 272
G YV GC WIEI+ ++ FV+ +
Sbjct: 700 ENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNP 759
Query: 273 EVSDK---LAEIEENMKELGF--VLNRSLY-------------QTKMKAVALGLISFPHG 314
E + L ++ M E G+ + +L ++ A+ALG+IS HG
Sbjct: 760 ETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHG 819
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCK 363
RV K++ +CG H +FMS + RE+V++D FH FKDG CSC+
Sbjct: 820 KIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCR 868
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y++ +LN C LL+ G + ++ + L V N L+++ ++CG + +A+L F
Sbjct: 396 DVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVF 455
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
K+ +SW II + + +EAL LF
Sbjct: 456 SEMRVKDIISWNTIIGGYSKNCYANEALSLF 486
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 58/122 (47%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+L+ K+ D+ L +++ +DSY+ + S + ++ G Q ++
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 222
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G +VGN L+ + ++D A F E++ +SW II+ V++G + L
Sbjct: 223 KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 282
Query: 134 LF 135
+F
Sbjct: 283 VF 284
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 58/126 (46%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
ID +I + C + L+++G + K N L+++ S+CG +D A
Sbjct: 294 IDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAV 353
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F+ +++ +S+T +I+ G EA+ LF++ + S + T + L A L+
Sbjct: 354 FREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLL 413
Query: 164 GEAYRL 169
E R+
Sbjct: 414 DEGKRV 419
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 50/115 (43%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
ID ++C +L C + L G + ++ G + +G+ L + + CG + +A
Sbjct: 92 IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRV 151
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
F + +L W +++ G S ++ LFK M+ TF K+++
Sbjct: 152 FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFS 206
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 187/409 (45%), Gaps = 61/409 (14%)
Query: 12 IPWNLLL----KACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQ 67
I WN ++ K C + + + LLE + D ++ +L +C + + G +
Sbjct: 313 ISWNTIIGGYSKNCYANEALSLFNLLLEEKRFS---PDERTVACVLPACASLSAFDKGRE 369
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
Y+ + G S V N L+++ ++CG + A + F K+ +SWT +I+ HG
Sbjct: 370 IHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGF 429
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
EA+ LF + + +F S L A + GLV E +R F M IEP+ EHY+
Sbjct: 430 GKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 489
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
+V+ L R G + FI+ + P IW LL R+H D+KLA+ +K+ EL+P
Sbjct: 490 CIVDMLARTGDLIKAYRFIENM-PIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEP 548
Query: 248 ---GMYV-------------------------------GC-WIEIQNKIYEFVSNEELTS 272
G YV GC WIEI+ ++ FV+ +
Sbjct: 549 ENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNP 608
Query: 273 EVSDK---LAEIEENMKELGF--VLNRSLY-------------QTKMKAVALGLISFPHG 314
E + L ++ M E G+ + +L ++ A+ALG+IS HG
Sbjct: 609 ETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHG 668
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCK 363
RV K++ +CG H +FMS + RE+V++D FH FKDG CSC+
Sbjct: 669 KIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCR 717
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y++ +LN C LL+ G + ++ + L V N L+++ ++CG + +A+L F
Sbjct: 245 DVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVF 304
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
K+ +SW II + + +EAL LF
Sbjct: 305 SEMRVKDIISWNTIIGGYSKNCYANEALSLF 335
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 58/122 (47%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+L+ K+ D+ L +++ +DSY+ + S + ++ G Q ++
Sbjct: 12 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 71
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G +VGN L+ + ++D A F E++ +SW II+ V++G + L
Sbjct: 72 KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 131
Query: 134 LF 135
+F
Sbjct: 132 VF 133
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 69/158 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + E + ++ + ID +I + C + L+++G +
Sbjct: 111 ISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSI 170
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K N L+++ S+CG +D A F+ +++ +S+T +I+ G EA
Sbjct: 171 GVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEA 230
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
+ LF++ + S + T + L A L+ E R+
Sbjct: 231 VKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV 268
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/409 (27%), Positives = 189/409 (46%), Gaps = 60/409 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ + L +Q+ D ++ +L++C + L +G +AY
Sbjct: 200 VTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAY 259
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + V N LI++ ++CG I A F++ EK +SWT +I HG EA
Sbjct: 260 IERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEA 319
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LF++ + + F L A + GLV F SM + Y + P EHY MV+
Sbjct: 320 TCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVD 379
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
R G+ +E LEF++ + P + P+I RTL+ + R HG+ KL + L++ +P
Sbjct: 380 MYCRTGLVKEALEFVRNM-PIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHES 438
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNE---ELTSE 273
YV IEI N+IYEFV+ + + E
Sbjct: 439 NYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQHKE 498
Query: 274 VSDKLAEIEENMKELGF------------------VLNRSLYQTKMKAVALGLISFPHGM 315
+ + + E+ MK+ G+ LNR ++ A+A GL+ P G
Sbjct: 499 IYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNR---HSEKLAIAFGLLRTPPGT 555
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
P R++K++ +C HSA +F+S I +RE++++D FHHFK G+CSC D
Sbjct: 556 PIRIVKNLRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGD 604
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 81/180 (45%), Gaps = 4/180 (2%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC-GKIDDADLAFKSTPEK 110
+L +C +LN+G + K G V N ++++ S C G I+ A F P+
Sbjct: 138 VLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKS 197
Query: 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF 170
+S++W+ +I G +EA+ LF++ Q + T S L A +G + E +
Sbjct: 198 DSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGAL-ELGKWI 256
Query: 171 LSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
+ E + I E + +++ + G + L+ + + + + W ++++ +HG
Sbjct: 257 EAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTI--VSWTSVIVGMAMHG 314
>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
[Solanum demissum]
Length = 819
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/409 (25%), Positives = 188/409 (45%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+PW ++ ++ +E ++ + + D + L + N +++G Q +
Sbjct: 412 VPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSS 471
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + GL+S G+ L+++ + CG + DA FK P++N + W +ISA +G
Sbjct: 472 VIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEAT 531
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
F D + +F S L A + GLV +A F SM +VY ++P +HY+ M++
Sbjct: 532 FSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMID 591
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL----DP 247
L R+G F E I + P + ++W ++L S R+H + LAK A D+L ++ D
Sbjct: 592 VLCRSGRFNEAENLISEM-PFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDA 650
Query: 248 GMYVG--------------------------------CWIEIQNKIYEFVSNEEL---TS 272
YV W+EI ++++ F +N+ T
Sbjct: 651 AAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTE 710
Query: 273 EVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPT 317
++ K+ + E M + G+ + S Y ++ A+A LI+ P G P
Sbjct: 711 QIRRKINSLVELMDKEGYKPDTSCTLQNVDEEMKIESLKYHSERLAIAFALINTPEGSPI 770
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ C H+A + +S I+ RE+ V+D FHHF+DG CSC D +
Sbjct: 771 IIMKNLRACVDCHAAIKVISKIVGREITVRDSSRFHHFRDGSCSCGDYW 819
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 109/239 (45%), Gaps = 5/239 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N+++ YE +L +R+Q ++ +L+ + L++G Q A
Sbjct: 311 VSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQ 370
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+S VGN L+++ ++C K +DA+ F + +NS+ WT IIS V G EA
Sbjct: 371 AVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEA 430
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L +FK+ + TF S LKA A + V +L S+ + + S S++V+
Sbjct: 431 LKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRL-GLLSSVFSGSVLVD 489
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMY 250
G ++ +E K + + + W L+ + +GD + + ++E G+Y
Sbjct: 490 MYANCGSMKDAIEVFKEMPDRNI--VCWNALISAYSQNGDAEATFSSFADMIE--SGLY 544
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/375 (28%), Positives = 172/375 (45%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y++ +L +C L +G A M + + +P +G LI++ ++CG++D A F
Sbjct: 246 DCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVF 305
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ +K+ + W IS GH A LF + + TF L A GLV
Sbjct: 306 RGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVD 365
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F SME V+ + P EHY MV+ LGRAG +E + +K + P + ++W LL
Sbjct: 366 EGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSM-PMEANAIVWGALLG 424
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
R+H D +L + L +L+ L+P G YV
Sbjct: 425 GCRLHRDTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKV 484
Query: 252 --GCWIEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGFVLNRSLY--------- 297
WIE+ ++EF+ ++ L+ ++ KL E+ +++K G+V
Sbjct: 485 PGYSWIEVDGVVHEFLVGDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEK 544
Query: 298 ------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
++ A+A GLIS RV+K++ +CG H A + +S RE++V+D
Sbjct: 545 EHFIGCHSEKLAIAFGLISTAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNR 604
Query: 352 FHHFKDGKCSCKDAY 366
FH F DG CSCKD +
Sbjct: 605 FHCFNDGSCSCKDYW 619
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS++ +L +C + +G + + K G S V L+++ +CG ID+A F
Sbjct: 107 DSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVF 166
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM---NPTTFRSALKAYALMG 161
PEKN +WT IIS + G EA+D+F+ + M + ++ S ++ YA G
Sbjct: 167 DDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNG 226
Query: 162 LVGEAYRLFLSM 173
L EA LF M
Sbjct: 227 LPKEALDLFFKM 238
>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
Length = 720
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 121/415 (29%), Positives = 195/415 (46%), Gaps = 63/415 (15%)
Query: 12 IPWNLLLKACIKAKDYEM-VHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ + K+ + E ++Q + D S +++C N + G Q A
Sbjct: 309 VVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHA 368
Query: 71 YMTKRGLISHP-AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
K + S+ +V N L+ + S+CG + DA F+ P+ N+++ II+ HG +
Sbjct: 369 LAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGT 428
Query: 130 EALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
E+L+LF+ Q S+ PT T S L A A G V E + F M++++ IEP EHYS
Sbjct: 429 ESLNLFE--QMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYS 486
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
M++ LGRAG E I +P W LL + R +G+M+LA+ A ++ L+L+P
Sbjct: 487 CMIDLLGRAGKLSEAERLID-TMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEP 545
Query: 248 ----------GMYV------------------------GC-WIEIQNKIYEFVSNEE--- 269
MY GC WIE+ +++ FV+ +
Sbjct: 546 TNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHP 605
Query: 270 LTSEVSDKLAEIEENMKELGFVLNRS------------------LYQTKMKAVALGLISF 311
E+ L E+ MK G+V + + ++ AVA GL+
Sbjct: 606 RIKEIHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFT 665
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
HG P V+K++ +CG H+A +FMS I R++ V+D FH F+DG+CSC D +
Sbjct: 666 KHGEPLLVVKNLRICGDCHNAIKFMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 4/149 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N L+ A D L ++ +D ++ ++ +C N + L + A+
Sbjct: 106 VSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACCNHVGLIRQLHSLAF 165
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE--KNSLSWTFIISARVNHGHPS 129
+ G S+ +V N L+ S+ G +++A++ F E ++ +SW +I A H
Sbjct: 166 SS--GFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGL 223
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+AL L++D R ++ T S L ++
Sbjct: 224 KALALYRDMVHRGFEIDMFTLASVLTTFS 252
>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
Length = 660
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 183/376 (48%), Gaps = 60/376 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S +I IL++ L G AY+ +RG S +V N L+ + +CG ++ F
Sbjct: 287 NSVTIVCILHAFAGVNALGQGKLLHAYILRRGFDSLVSVLNALMAMYMKCGCLEAGRHIF 346
Query: 105 KSTP-EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
K+ +SW +IS HG EA+ +F+D S N TF S L A + GLV
Sbjct: 347 DLIGHRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGACSHAGLV 406
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKG--IVPGKLCPLIWRT 221
E RLF SM + Y++ P EHY+ MV+ LGRAG +E +E I+G I P P +W +
Sbjct: 407 DEGKRLFESMVD-YNVTPRAEHYACMVDLLGRAGHLDEAVELIQGMHIRPS---PQVWGS 462
Query: 222 LLLSSRVHGDMKLAKYALDKLLELDP---GMYV--------------------------- 251
LL + R+H ++ A+ A +L +L+P G YV
Sbjct: 463 LLGACRIHRHVEYAEMACSQLFDLEPRNAGNYVLLADIYARAKLHSEVGVLKDLLEEHAL 522
Query: 252 ----GC-WIEIQNKIYEFVSNEELTSEVSDKLAEIEE---NMKELGFVLNRS--LY---- 297
GC WIE++ +++ FVS + ++ + A I E MK G+V + LY
Sbjct: 523 EKVPGCSWIEVKKRLHMFVSVDNKNPQIEELQALIGEFVTQMKNDGYVPDTGAVLYDIEE 582
Query: 298 ---------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
++ AVA GLI+ G R+ K++ +C HS +F+S ERE++V+D
Sbjct: 583 EEKEKILLGHSEKLAVAFGLINTGRGEVIRITKNLRLCEDCHSVTKFISKYAEREIIVRD 642
Query: 349 PGSFHHFKDGKCSCKD 364
FHHF+DG CSC D
Sbjct: 643 VNRFHHFRDGICSCGD 658
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQA-----QAYMTKRGLISHPAVGNCLININSRCGKID 98
+DSYS L +C+ +V A A+ +RG H V LI+ ++ G +
Sbjct: 178 VDSYSYAHGLKACIAASTSHVPASALVREIHAHAVRRGYGLHTHVATTLIDCYAKLGIVS 237
Query: 99 DADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM--NPTTFRSALKA 156
A+ F + PE+N +SWT +I + P +A+ LF++ + N T L A
Sbjct: 238 YAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDEDLVPNSVTIVCILHA 297
Query: 157 YALMGLVGEA 166
+A + +G+
Sbjct: 298 FAGVNALGQG 307
>gi|218198170|gb|EEC80597.1| hypothetical protein OsI_22944 [Oryza sativa Indica Group]
Length = 563
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 177/355 (49%), Gaps = 46/355 (12%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTK--RGLISHPAVGNCLININSRCGKIDDA 100
+ ++ +L +C + L VG Q A++ K + LI H N L+++ +CG + DA
Sbjct: 224 LVQPGTLTSVLRACTGLVTLEVGRQVHAHVLKYDKDLILH----NALLDMYCKCGSLQDA 279
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
D F P+++ +SW+ +IS +G EAL +F + N T L A +
Sbjct: 280 DALFGRMPQRDVISWSTMISGLAQNGRSIEALKVFDMMKSEGPRPNHITMVGVLFACSHA 339
Query: 161 GLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LI 218
GLV + + F SME+++ I+P EH + MV+ LGRAG ++ ++FI + P +I
Sbjct: 340 GLVEDGWYYFSSMEKLFGIQPEREHCNCMVDLLGRAGKLDDAVKFIHEM---NFQPDSVI 396
Query: 219 WRTLLLSSRVHGDMKLAKYALDKLLEL---------------------DPGMYVGCWIEI 257
WRTLL + R+H + LA YA ++L L DPG WIE+
Sbjct: 397 WRTLLGACRMHKNADLAAYAAKEILRLEPDDQDAEKSWKMMRDRGVKKDPGR---SWIEL 453
Query: 258 QNKIYEF------VSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISF 311
++ I E V+N T + L ++ KE + Y ++ A+A G ++
Sbjct: 454 ESIIQELSRLFSRVTNLGYTPQTEFVLQDLATEQKE-----DLLKYHSEKLAIAFGTMNA 508
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G P R++K++ +CG H+ + +S + ++++DP FHHF+DG CSC D +
Sbjct: 509 MEGKPIRIMKNLRICGDCHAFAKLVSKSEGKVIIIRDPVRFHHFQDGVCSCNDYW 563
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA-----VGNCLININSRCGKIDD 99
D ++ ++ C+ + G ++ G ++ P+ V N L+++ ++ G +DD
Sbjct: 66 DPVAVSRLIKLCVRHGTPSDGRLIHRHVFGGGDVAAPSCSSLFVSNSLVSLYAKFGLLDD 125
Query: 100 ADLAFKSTPEKNSLSWTFIISARVN-HGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
A F P KN +SWT +++A N G +AL LF + N TF S L A
Sbjct: 126 ALRLFDGMPHKNVVSWTTVVAALANARGRKEDALRLFVAMLRDGVAPNMYTFSSILGA 183
>gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 561
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/410 (26%), Positives = 190/410 (46%), Gaps = 58/410 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ C + + Y ++ ++Q +S +IC +L +C P LL G + +
Sbjct: 155 VSWTALISGCSQNEKYMDALKIFSQMQAENVKPNSTTICSLLCACAGPSLLKKGEELHCF 214
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G + V LI++ S GK+ A F EK W ++ H H E
Sbjct: 215 SMKLGFVDDIYVATALIDMYSEAGKLKVAYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEV 274
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ L+ + R+ + TF + L A GLV E ++ F SM+E Y+I P+ EHY MV+
Sbjct: 275 MILYDKMRERHIRPDAITFTALLSACKNSGLVDEGWKYFDSMQEDYNIVPTIEHYCCMVD 334
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
LG++G +E FI+ +P K IW LL S ++H ++KLA+ A KL +++P
Sbjct: 335 LLGKSGFLDEASHFIE-TMPIKPDASIWGALLASCKIHKNIKLAEIAARKLFKMEPNNSA 393
Query: 248 ------GMY-------------------------VGCWIEIQNKIYEFVSN-----EELT 271
+Y V W ++ I+ F + EE
Sbjct: 394 NYVLMMNLYSSLNRWVAVERLKHSMTVLAMKIPPVWSWTQVNQSIHVFSTEGRPHPEE-- 451
Query: 272 SEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMP 316
E+ +L ++ +++LG+ + + + T+ A+ G++ G P
Sbjct: 452 GEIYFELYQLISEIRKLGYAPDLNCVCQNIDDNEKEKILMSHTEKLAMVYGVMKMKGGSP 511
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K+ +C H+ +++S + +RE++++D G FHHFK+GKC+C D +
Sbjct: 512 IRIVKNTRICFDCHTVAKYISLVRKREILLRDGGRFHHFKNGKCACNDRW 561
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 193/409 (47%), Gaps = 58/409 (14%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLC-CGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN+L+ A + + + +QL D ++ L++C +++G Y+
Sbjct: 327 WNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYI 386
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
+ G++ + + + L+++ ++CG ++ A F S E++ W+ +I+ HG A+
Sbjct: 387 KREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAI 446
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA 192
DLF + Q N TF + L A + GLV E F ME VY + P +HY+ MV+
Sbjct: 447 DLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDI 506
Query: 193 LGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMY-- 250
LGRAG EE +E I + +W LL + +H +++L + A D+LL+L+P +
Sbjct: 507 LGRAGFLEEAMELINEMSTTPSAS-VWGALLGACSLHMNVELGELASDQLLKLEPRNHGA 565
Query: 251 ----------VGCW-----------------------IEIQNKIYEFVSNEE---LTSEV 274
G W IE ++EF+ + L+S +
Sbjct: 566 IVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNI 625
Query: 275 SDKLAEIEENMKELGFVLNR-----------------SLYQTKMKAVALGLISFPHGMPT 317
KL EI +K +G+ N+ SL+ K+ A+A GL++ P
Sbjct: 626 YSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKL-AIAFGLVTLAPSQPI 684
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV+K++ +CG H+ + +S + +R+++++D FHHF+DG CSC D +
Sbjct: 685 RVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 111/271 (40%), Gaps = 48/271 (17%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A + E EL +++ +S ++ +L++C + L G +Y
Sbjct: 193 VSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSY 252
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTF-------------- 117
+ ++G+ + N ++++ ++CG +DDA F PE++ SWT
Sbjct: 253 IERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAA 312
Query: 118 -----------------IISARVNHGHPSEALDLFKDKQW-RYTSMNPTTFRSALKAYAL 159
+ISA +G P EAL +F + Q + + T S L A A
Sbjct: 313 RLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQ 372
Query: 160 MGLV--GEAYRLFLSMEEVY---HIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL 214
+G + G +++ E + H+ S +V+ + G E+ LE + +
Sbjct: 373 LGAIDLGGWIHVYIKREGIVLNCHL------ISSLVDMYAKCGSLEKALEVFYSVEERDV 426
Query: 215 CPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
+W ++ +HG K A+D E+
Sbjct: 427 --YVWSAMIAGLGMHGR---GKAAIDLFFEM 452
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 1/146 (0%)
Query: 14 WNLLLKACIKAKD-YEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN L++A + D ++ L+ + C + ++ ++ + VGT
Sbjct: 93 WNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMA 152
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K + N L+ CG + A+ FK K+ +SW +ISA P +AL
Sbjct: 153 IKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDAL 212
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYA 158
+LF + N T L A A
Sbjct: 213 ELFLKMERENVMPNSVTMVGVLSACA 238
>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/371 (28%), Positives = 172/371 (46%), Gaps = 55/371 (14%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
S+ +L+ C + L+ G Q + + + V + LI + +CG + A F
Sbjct: 199 SVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRF 258
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
K+ + W II+ HG +AL++F D + + TF L A + G V E
Sbjct: 259 SSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGL 318
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
+F SM+ Y ++P EHY+ MV+ LGRAG E + I+ + P + ++W LL + R
Sbjct: 319 EIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENM-PVEADAIVWGALLGACR 377
Query: 228 VHGDMKLAKYALDKLLELDP---GMYV-------------------------------GC 253
H ++ LA+ A KLL+L+P G Y+ GC
Sbjct: 378 THKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGC 437
Query: 254 -WIEIQNKIYEFVSNEELTSE----VSDKLAEIEENMKELGFVLNRSLY----------- 297
WIE+ K++ F + + KL ++ ++E G+ + S
Sbjct: 438 SWIEVDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAGYCPDGSFVMHDVDEEEKVH 497
Query: 298 ----QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
++ AVA GL+ P GMP RV+K++ +CG SHS + ++ + RE++++D FH
Sbjct: 498 SLRDHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDSHSTIKLIAQVTGREIILRDTNRFH 557
Query: 354 HFKDGKCSCKD 364
HFKDG CSC D
Sbjct: 558 HFKDGLCSCSD 568
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N L++ + G I +A F PE+N +SWT +I V G EA LF WR
Sbjct: 29 NGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLF----WRMPE 84
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLF 170
N ++ L G V EA +LF
Sbjct: 85 RNVVSWTVMLGGLIEDGRVDEARQLF 110
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F PE N++SW ++S V +G SEA +F + N ++ + ++ Y GL+
Sbjct: 17 FDKMPETNTISWNGLVSGYVQNGMISEARKVFD----KMPERNVVSWTAMIRGYVQEGLI 72
Query: 164 GEAYRLFLSMEE 175
EA LF M E
Sbjct: 73 EEAELLFWRMPE 84
>gi|30103011|gb|AAP21424.1| putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
gi|222626012|gb|EEE60144.1| hypothetical protein OsJ_13038 [Oryza sativa Japonica Group]
gi|374087691|gb|AEY82646.1| chloroplast ALBL [Oryza sativa Japonica Group]
Length = 859
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 113/404 (27%), Positives = 182/404 (45%), Gaps = 56/404 (13%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+L+ + Y+ + ++Q D +I I+ + N + + A +
Sbjct: 461 WNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIPAFTNLVASWKVREIHACIF 520
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
L + N LIN S+ G + A F +N +SW II A V HG P+EALD
Sbjct: 521 HHNLELDGKIANALINAYSKSGNLASACAVFDMHSSRNIISWNCIILAHVLHGSPNEALD 580
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF + + TT + +KAY L G V E + F +M Y+I P +HY+ MV+ L
Sbjct: 581 LFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTFFNMANDYNITPELDHYAAMVDLL 640
Query: 194 GRAGMFEEVLEFIK--GIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG--- 248
GR+G +E E I ++P +W T L ++ +HG+++LA A +L +DPG
Sbjct: 641 GRSGRLKEAYELIDEMPLIPNS---TVWDTFLTAAVMHGNVRLAHLAARELSAIDPGDPR 697
Query: 249 -MYVG------------------------------CWIEIQNKIYEFVSNEELTSEVSDK 277
+G C IEI+NK+Y F + + + E D
Sbjct: 698 VQRLGSSLQDLTGKTVDVPEEMTPNKGRNLDEVESCSIEIRNKVYVFSNGDNVGLE--DT 755
Query: 278 LAEIEENMKELGFVL---------------NRSLYQTKMKAVALGLISFPHGMPTRVIKS 322
+AE++ M ++G + + A+A GL + P R+IK+
Sbjct: 756 VAELKSMMFKMGHSMLDIGIGTLDVEEEKEEVVGVHCEKLAIAFGLSNSPQFKNIRIIKT 815
Query: 323 VGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
MC + H+ + +S R +++KDP H F+DGKCSC+D +
Sbjct: 816 ARMCNHCHTFAKLVSEKYGRHILIKDPKCLHKFEDGKCSCEDYW 859
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 86/196 (43%), Gaps = 1/196 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ + + R++L + SI +++C + LLN + ++
Sbjct: 288 VTWTSLVSGFVHMDRSDEALRCFIRMRLAGVEPNGMSIACAISACASLKLLNQAKELHSH 347
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G +++ GN L+++ ++CG+I A F P+K+ SW +IS G+ +A
Sbjct: 348 AIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPDKDIFSWNSMISGYAQAGYCGKA 407
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+LF + N T+ + + Y G A+ LF ME + ++ ++I++
Sbjct: 408 YELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFELFQMMES-HGVKRDTATWNILIA 466
Query: 192 ALGRAGMFEEVLEFIK 207
G ++ + +
Sbjct: 467 GSVHNGYYDRAIRIFR 482
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 3/134 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGL---ISHPAVGNCLININSRCGKIDDAD 101
D + I IL +C L +G + +RG + VGN ++ + ++CG + A
Sbjct: 147 DRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGWAR 206
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
F ++ +W +I EA L + T T+ + + +YA G
Sbjct: 207 KVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSYARFG 266
Query: 162 LVGEAYRLFLSMEE 175
+ A L MEE
Sbjct: 267 DLDVAMELLGQMEE 280
>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/406 (25%), Positives = 186/406 (45%), Gaps = 53/406 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + E+ +++ G DS + +L++C L++G
Sbjct: 175 IAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHEC 234
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G+ + + L+N+ SRCG + A F S E N +SWT +IS HG+ EA
Sbjct: 235 IVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEA 294
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+++F + N T+ + L A A GL+ E +F SM++ Y + P EH+ MV+
Sbjct: 295 MEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEGRLVFASMKQEYGVVPGVEHHVCMVD 354
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DPG 248
GR G+ E +F++G+ +L P +W +L + ++H + L + L+ +PG
Sbjct: 355 MFGRGGLLNEAYQFVRGLSSEELVPAVWTAMLGACKMHKNFDLGVEVAENLISAEPENPG 414
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEELTSEVSD 276
YV I+++N+ Y F ++ E ++
Sbjct: 415 HYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVENRSYLFSMGDKSHPETNE 474
Query: 277 KLAEIEENM---KELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPTR 318
++E M K+ G+ Y ++ AVA GL+ HG+ R
Sbjct: 475 IYCYLDELMWRCKDAGYAPAPESAMHELEEEEREYALRYHSEKLAVAFGLMKTCHGVTLR 534
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
++K++ +C HSA +F+S ++ RE++V+D FHHF++G CSC D
Sbjct: 535 IVKNLRICEDCHSAIKFISVVMNREIIVRDKLRFHHFREGSCSCSD 580
>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
Length = 580
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/418 (27%), Positives = 189/418 (45%), Gaps = 55/418 (13%)
Query: 2 KLCSLISDVEI-PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
KL I D + WN ++ + E+ +Q+ DS + L++C
Sbjct: 161 KLFDAIRDKSVVAWNAMISGYEQNGLAGRAIEVYREMQMAGEAPDSATFVATLSACAQAG 220
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L++G Q + + + +G L+N+ +RCG ++ A F E+N ++WT +I+
Sbjct: 221 ALDLGRQVDKLIVSERMEMNVVLGAALVNMYARCGLVNKAREWFNMLQERNVVTWTSMIA 280
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
HGH EA+ LF + + N TF + L A A GLV E F SM+ VY +
Sbjct: 281 GYGMHGHGGEAVKLFNLMRQQGPPPNDVTFVAVLSACAHAGLVSEGRDAFASMKSVYGLV 340
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
P EHY MV+ GRAG+ ++ + FI +PG+ P +W +L + ++H D L +
Sbjct: 341 PRVEHYCSMVDMYGRAGLLDDAMRFIHDSIPGEPGPEVWTAMLGACKMHKDFNLGVEVAE 400
Query: 241 KLLELDP----------GMY------------------------VG-CWIEIQNKIYEFV 265
+L+ L+P +Y +G IEI + F
Sbjct: 401 RLIALEPESPSHRVLLSNLYALSGKMNHVEKVRDTMIKRRLKKPIGYSLIEIAGVAHLFR 460
Query: 266 SNEE---LTSEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALG 307
E+ TSE+ L ++ E + ++G+V Y + AVA G
Sbjct: 461 MGEKSHPKTSEIYQYLEKLIEKITDVGYVPKTDSVLHELEEEEREFALRYHGEKLAVAFG 520
Query: 308 LISFPH-GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
L+ P R+IK++ +C H A ++MS + RE++V+D FHHFK GKCSC++
Sbjct: 521 LMMTSGCTTPIRIIKNLRICEDCHLAIKYMSAVENREIIVRDMHRFHHFKAGKCSCQE 578
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 57/118 (48%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
S++ + +C + + G A+ GL S+ V L+ + S+CG++D A
Sbjct: 103 FSSFAFTSVAKACADLSAIRAGMGIHAHAVLLGLGSNRFVQTSLVVLYSKCGQLDVARKL 162
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
F + +K+ ++W +IS +G A++++++ Q + + TF + L A A G
Sbjct: 163 FDAIRDKSVVAWNAMISGYEQNGLAGRAIEVYREMQMAGEAPDSATFVATLSACAQAG 220
>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
Length = 673
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/382 (28%), Positives = 172/382 (45%), Gaps = 62/382 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ IL C L G Q A K G +S VG L+++ +CG I+ A AF
Sbjct: 293 DLFTLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAF 352
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ +SWT +I++ HG AL LF+D + N TF L A + G+V
Sbjct: 353 LDMSTRTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVD 412
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK--GIVPGKLCPLIWRTL 222
EA F M++ Y I+P +HY +V+ R G +E + IK + P + IW L
Sbjct: 413 EALEYFEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNE---FIWLLL 469
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP----------GMYVGC--W---------------- 254
+ R HG+ +L YA ++LL+L P MY+ W
Sbjct: 470 IAGCRNHGNEELGFYAAEQLLKLKPRSTETYVVLLNMYISAERWEDVSMVRRLMKEEKVG 529
Query: 255 -------IEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGF-------------- 290
I I+ +++ F +N L +E+ L ++ + K LG+
Sbjct: 530 KLKDWSRISIKGEVHSFKTNNRLHNHNAELHTLLNDLVDRAKSLGYEQLENMEVIDDEEE 589
Query: 291 -----VLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELV 345
+ ++Y ++ AV GL++ P G P RVIKSV MC H + +S+ R ++
Sbjct: 590 EAEEKAFSSAVYHSEKLAVTFGLLNTPIGAPIRVIKSVTMCKDCHDFMKVVSSQTTRHII 649
Query: 346 VKDPGSFHHFKDGKCSCKDAYG 367
+KD H F +G+CSC D++G
Sbjct: 650 IKDGKRLHKFVNGQCSCADSHG 671
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ ++ E+ E+ + F ++++ LN+C + + +G Q A+
Sbjct: 47 VVWTTLMTGYVQNSQPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAF 106
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + ++GN L ++ S+ G +D + AF+ T EK+ +SWT IISA ++G
Sbjct: 107 IIKYRISHDSSIGNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMG 166
Query: 132 LDLFKDKQWRYTSMNPTTFRSAL 154
L LF + + N T S L
Sbjct: 167 LRLFIEMLFENVEPNDFTLTSVL 189
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 12 IPWNLLLKACIKAKDYEM-----VHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
I W ++ AC M + L E ++ + +++ +L+ C ++G
Sbjct: 148 ISWTTIISACGDNGRAGMGLRLFIEMLFENVE-----PNDFTLTSVLSLCSTIQSSDLGM 202
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q + TK G S+ + N L+ + +CG ID+A F KN ++W +I+ G
Sbjct: 203 QVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIA-----G 257
Query: 127 HPSEALDLFKDK 138
H ++A+DL KD
Sbjct: 258 H-AQAMDLAKDN 268
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A++ K G V + L+N+ ++CG + +A F + P +N + WT +++ V + P
Sbjct: 3 HAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQP 62
Query: 129 SEALDLFKD 137
A+++F D
Sbjct: 63 EVAVEVFGD 71
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 175/371 (47%), Gaps = 55/371 (14%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ IL++C L++G + L S+ V L+++ ++CG I +A F
Sbjct: 417 TVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM 476
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
+KN ++W +I+ HGH EAL LF + TF S L A + GLV E
Sbjct: 477 VDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGN 536
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
+F SM Y +P EHY+ MV+ LGRAG LEFI+ + P + P +W LL +
Sbjct: 537 EIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERM-PLEPGPAVWGALLGACM 595
Query: 228 VHGDMKLAKYALDKLLELDP---GMYV-------------------------------GC 253
+H + ++A A +L +LDP G YV GC
Sbjct: 596 IHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGC 655
Query: 254 -WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGF---VLNRSLY--------- 297
IEI ++ Y F S + + + + L ++ M+E G+ + +L+
Sbjct: 656 TLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKEL 715
Query: 298 ----QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
++ A+A GLIS G R+IK++ +C H+A +F+S I ER +VV+D FH
Sbjct: 716 MVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFH 775
Query: 354 HFKDGKCSCKD 364
HFK+G CSC D
Sbjct: 776 HFKNGICSCGD 786
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G+I P+V L + R ++ A F +PEK+ SW +IS +G A+
Sbjct: 343 KIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAIS 402
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMG 161
LF++ + S NP T S L A A +G
Sbjct: 403 LFQEMMPQL-SPNPVTVTSILSACAQLG 429
>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
gi|194690792|gb|ACF79480.1| unknown [Zea mays]
Length = 617
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 179/377 (47%), Gaps = 57/377 (15%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+ ++ +L +C L+ G Y+ RG+ +G L+++ S+CG + A
Sbjct: 244 VGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEV 303
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F+S E+N +WT +S +G +E L LFK + N +F + L+ ++ GLV
Sbjct: 304 FESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLV 363
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E F SM++ Y ++P EHY MV+ GRAG ++ + FI + P + +W LL
Sbjct: 364 DEGRACFDSMDK-YGVDPWPEHYGCMVDLYGRAGRLDDAISFINDM-PMEPHEGVWGALL 421
Query: 224 LSSRVHGDMKLAKYALDKLLELDP--------------------------GMY------- 250
+SR+H + L KYALDKLL ++ GM
Sbjct: 422 NASRIHNSVDLGKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKK 481
Query: 251 VGCW--IEIQNKIYEFVSNEELT---SEVSDKLAEIEENMKELGFVLNR----------- 294
V W IE+ K++EF L +E+ LAE++ ++ G+ N
Sbjct: 482 VPGWSTIEVDGKVHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEE 541
Query: 295 -----SLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
SL+ K+ A+A GLI P + R++K++ +C H + +S + RE+V++D
Sbjct: 542 KEGAISLHSEKL-ALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDR 600
Query: 350 GSFHHFKDGKCSCKDAY 366
FHHFK G+CSC+D +
Sbjct: 601 NRFHHFKGGECSCRDYW 617
>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/417 (25%), Positives = 203/417 (48%), Gaps = 61/417 (14%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
+I+ + WN ++ + D + L +R++ D ++ +L +C LL +G
Sbjct: 175 MITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELG 234
Query: 66 TQAQAYMTK--RGLISHPAVGNCLININSRCGKIDDADLAF-KSTPEKNSLSWTFIISAR 122
Q ++ K + LI + N L+++ +CG ++DA+L F + EK+ +SW+ +I+
Sbjct: 235 RQVHVHVLKYDQDLI----LNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGL 290
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS 182
+G ++AL LF+ + + N T L A + GLV + + F SM+E + I+P
Sbjct: 291 AQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPG 350
Query: 183 EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
EHY +++ LGRAG +E ++ I + + + WR LL + RVH ++ LA YA ++
Sbjct: 351 REHYGCIIDLLGRAGKLDEAVKLIHEM-NHEPDAVTWRILLGACRVHKNVDLAIYAAKEI 409
Query: 243 LELDP---GMYV-------------------------------GC-WIEIQNKIYEFV-- 265
L+LDP G Y+ GC WIE+ +++ F+
Sbjct: 410 LKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILG 469
Query: 266 -SNEELTSEVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLI 309
++ E+ +L+++ + + LG+V + + Y ++ A+ GL+
Sbjct: 470 DNSHPRIEEIKRELSQLIQRLMRLGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLM 529
Query: 310 SFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
S P+ + K++ +CG H + +S + R +V++DP +HHF+ G CSC D +
Sbjct: 530 SLPNQKTIHIRKNLRICGDCHIFAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N LIN+ + G +D+A F P++N +SWT +ISA N +ALD
Sbjct: 55 NTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVR 114
Query: 145 MNPTTFRSALKA 156
N T+ S L+A
Sbjct: 115 PNMYTYSSVLRA 126
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 175/371 (47%), Gaps = 55/371 (14%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ IL++C L++G + L S+ V L+++ ++CG I +A F
Sbjct: 417 TVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM 476
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
+KN ++W +I+ HGH EAL LF + TF S L A + GLV E
Sbjct: 477 VDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGN 536
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
+F SM Y +P EHY+ MV+ LGRAG LEFI+ + P + P +W LL +
Sbjct: 537 EIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERM-PLEPGPAVWGALLGACM 595
Query: 228 VHGDMKLAKYALDKLLELDP---GMYV-------------------------------GC 253
+H + ++A A +L +LDP G YV GC
Sbjct: 596 IHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGC 655
Query: 254 -WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGF---VLNRSLY--------- 297
IEI ++ Y F S + + + + L ++ M+E G+ + +L+
Sbjct: 656 TLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKEL 715
Query: 298 ----QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
++ A+A GLIS G R+IK++ +C H+A +F+S I ER +VV+D FH
Sbjct: 716 MVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFH 775
Query: 354 HFKDGKCSCKD 364
HFK+G CSC D
Sbjct: 776 HFKNGICSCGD 786
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G+I P+V L + R ++ A F +PEK+ SW +IS +G A+
Sbjct: 343 KIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAIS 402
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMG 161
LF++ + S NP T S L A A +G
Sbjct: 403 LFQEMMPQL-SPNPVTVTSILSACAQLG 429
>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 952
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/410 (28%), Positives = 190/410 (46%), Gaps = 56/410 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
EI W++++ C+K E E+ ++Q D +I IL +C L +G +
Sbjct: 545 EITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHC 604
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ + A N L+++ ++CG + + F P K+ SW +I A HG+ E
Sbjct: 605 YVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKE 664
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL LF+ + TF L A + LV E ++F SM + +EP EHY+ +V
Sbjct: 665 ALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVV 724
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ RAG EE FI+ + P + + W+ L RV+ +++LAK + KL E+DP
Sbjct: 725 DIYSRAGCLEEAYGFIQRM-PMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGS 783
Query: 248 GMYV-------------------------------GC-WIEIQNKIYEFVSNEELTSEVS 275
YV GC W + N+++ FV+ ++ E S
Sbjct: 784 ANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKSNME-S 842
Query: 276 DK----LAEIEENMKELG------FVLNRSLYQTKMK---------AVALGLISFPHGMP 316
DK L E+ +K G +VL+ + K + AVA G+++
Sbjct: 843 DKIYNFLDELFAKIKAAGYKPDTDYVLHDIDQEEKAESLCNHSEKLAVAFGILNLNGQST 902
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV K++ +CG H+A ++MS ++ +VV+D FHHFK+G CSCKD +
Sbjct: 903 IRVFKNLRICGDCHNAIKYMSNVVGVTIVVRDSLRFHHFKNGNCSCKDFW 952
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ IL++C + L G + K G++ + V N L+N+ C + +A F
Sbjct: 241 DPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVF 300
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
P +N ++W + S VN G P + L++F++ +P S L A
Sbjct: 301 DLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPA 352
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ IL C + L G + ++ + G++ V + +N ++C + +A F
Sbjct: 143 TVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLM 202
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
P ++ ++W + S VN G P + L++F++ +P T L A
Sbjct: 203 PHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSA 251
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ IL +C L G + K G++ V L+N+ + C + +A F
Sbjct: 342 DPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVF 401
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
P +N ++W + S VN G P + L++F++
Sbjct: 402 DLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFRE 434
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
T+ G++S ++GN I+ +C ++ A F ++ ++W + + VN G P + L
Sbjct: 67 TRCGVMSDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGL 126
Query: 133 DLFKDKQWRYTSMNPTTFRSAL 154
++F+ NP T S L
Sbjct: 127 NVFRKMGLNKVKANPLTVSSIL 148
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 5/165 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ IL++C + L G + + G++ V N L+++ ++C + +A + F
Sbjct: 443 DLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVF 502
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P + SW I++A + + L +F + T+ + +
Sbjct: 503 DLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIE 562
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI 209
EA +F M+ + YSI+ RA E L K I
Sbjct: 563 EAMEIFRKMQTMGFKPDETTIYSIL-----RACSLSECLRMGKEI 602
>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 705
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/374 (27%), Positives = 182/374 (48%), Gaps = 56/374 (14%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ IL+ C + L+ G Q A + + V + L+ + +CG++ + L F
Sbjct: 333 TLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRF 392
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWR-YTSMNPTTFRSALKAYALMGLVGEA 166
P K+ + W IIS +HG EAL +F + T N TF + L A + G+V E
Sbjct: 393 PSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEG 452
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226
+++ SME V+ ++P HY+ MV+ LGRAG F E +E I + + +W +LL +
Sbjct: 453 LKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTV-EPDAAVWGSLLGAC 511
Query: 227 RVHGDMKLAKYALDKLLELDP---GMYV-------------------------------G 252
R H + +A++ KL+E++P G Y+ G
Sbjct: 512 RTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPG 571
Query: 253 C-WIEIQNKIYEF----VSNEELTSEVSDKLAEIEENMKELGF---------------VL 292
C W E++NK++ F +++ + L E++ ++E G+ +
Sbjct: 572 CSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKV 631
Query: 293 NRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
N Y ++ AVA L+ G+P RV+K++ +C H+A + +S + ERE++++D F
Sbjct: 632 NSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRF 691
Query: 353 HHFKDGKCSCKDAY 366
HHF++G+CSCKD +
Sbjct: 692 HHFRNGECSCKDYW 705
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 19/175 (10%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M R +IS N L++ + G+ID+A F PE+N +SWT ++ V++G A
Sbjct: 74 MPDRNIISW----NGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVA 129
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH--YSIM 189
LF W+ N ++ L + G + +A +L Y + P +++ + M
Sbjct: 130 ESLF----WKMPEKNKVSWTVMLIGFLQDGRIDDACKL-------YEMIPDKDNIARTSM 178
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+ L + G +E E + + + W T++ + + A+ D + E
Sbjct: 179 IHGLCKEGRVDEAREIFDEMSERSV--ITWTTMVTGYGQNNRVDDARKIFDVMPE 231
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 175/376 (46%), Gaps = 55/376 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ S+ +L++C G ++ K G + +V N LI+ S+CG +D A L F
Sbjct: 268 NEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVF 327
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ ++++SWT +I+ HG+ EA+ LF + + + TF S L A + GLV
Sbjct: 328 DNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVD 387
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
F M Y IEP EHY MV+ GRAG ++ +F+ + P ++WRTLL
Sbjct: 388 LGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQM-PISPNDIVWRTLLG 446
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW------------------ 254
+ +HG++ LA +L ELDP G +V G W
Sbjct: 447 ACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKT 506
Query: 255 -----IEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMK-------ELGFVLN------ 293
IE+ IY FV+ E ++ E KL EI ++ E+G VL+
Sbjct: 507 PGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIEGGYVPEVGSVLHDIEVEE 566
Query: 294 --RSLYQTKMK-AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
S+ Q K AVA G+ P G RV+K++ +C H+ + +S + E E+VV+D
Sbjct: 567 KEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRICRDCHTVMKLISKVYEVEIVVRDRS 626
Query: 351 SFHHFKDGKCSCKDAY 366
FH F G CSC+D +
Sbjct: 627 RFHSFTHGSCSCRDYW 642
>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Vitis vinifera]
Length = 703
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 185/408 (45%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W +L A + +E +++ + Y+ +LNSC L G
Sbjct: 297 VSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTR 356
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G H VGN LIN+ S+ G I+ A F ++S++W+ +I +HG EA
Sbjct: 357 IKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREA 416
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L +F++ + TF L A A +G V E + + + IEP EHY+ +V
Sbjct: 417 LVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVG 476
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG--- 248
L +AG +E F+K P K + WRTLL + VH + L K + +L++DPG
Sbjct: 477 LLCKAGRLDEAENFMKS-TPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVG 535
Query: 249 -------MYV-------------------------GCWIEIQNKIYEFVSNEEL---TSE 273
MY WIEI+N I+ FVS + +++
Sbjct: 536 TYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQ 595
Query: 274 VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
+ +K+ E+ ++ +G+V + + Y ++ A+A GL+ P G P R
Sbjct: 596 IYEKVQELLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPIR 655
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
VIK++ MC HSA + +S + R ++V+D FH F DG CSC D +
Sbjct: 656 VIKNLRMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 104/258 (40%), Gaps = 45/258 (17%)
Query: 32 ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91
E+L+R+ C D+ + C + L +G Q M + G V + +I++
Sbjct: 216 EVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMY 275
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR 151
+CG I +A F KN +SWT I++A +G EAL+ F + + N TF
Sbjct: 276 GKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFA 335
Query: 152 SALKA-----------------------------------YALMGLVGEAYRLFLSMEEV 176
L + Y+ G + A+++FL M
Sbjct: 336 VLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEM--- 392
Query: 177 YHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP-LIWRTLLLSSRVH-GDMKL 234
I +S M+ L G+ E L + ++ K CP + +LS+ H G ++
Sbjct: 393 --ICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQE 450
Query: 235 AKYALDKLLE---LDPGM 249
Y L++L++ ++PG+
Sbjct: 451 GFYYLNQLMKQTGIEPGV 468
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ Y I++SC + + G Q Y K GL+ H V N LI + SR + A +
Sbjct: 128 NEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVW 187
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
P + S+ II+ + +G+PSEAL++
Sbjct: 188 YEVPGLDVFSYNIIINGLLENGYPSEALEVL 218
>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
mitochondrial [Vitis vinifera]
gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 177/375 (47%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S + I+ +C + L G YM + G+ I++ ++CG I A F
Sbjct: 315 NSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVF 374
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
PEKN SW+ +I+ HG +EAL+LF + + N TF S L A + G +
Sbjct: 375 CQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIE 434
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F SM Y I P EEHY+ MV+ LGRAG +E L FI + P + W LL
Sbjct: 435 EGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNM-PTEPGASAWGALLG 493
Query: 225 SSRVHGDMKLAKYALDKLLELD---PGMY---------VGCW------------------ 254
+ R+H +LA+ KLL L+ G+Y VG W
Sbjct: 494 ACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKI 553
Query: 255 -----IEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELG------FVLNRSLYQTK 300
IEI+ K+Y F S + +++ ++E M+ELG FVL+ + K
Sbjct: 554 VGFTSIEIEEKLYLFSSEDRFAYKNTQIESLWNSLKERMRELGYVPDLRFVLHDVDDEVK 613
Query: 301 MK---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ A+ GL++ GMP R+ K++ +CG H+A +F+S I R+++++D
Sbjct: 614 QEVLCGHSEKLAIVFGLLNSGEGMPIRITKNMRVCGDCHTASKFISLITRRKIIMRDVKR 673
Query: 352 FHHFKDGKCSCKDAY 366
FHH +DG CSC D +
Sbjct: 674 FHHVQDGVCSCGDYW 688
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 61/143 (42%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN +L + K K + V +L +R+ +DS+++ + +C L +
Sbjct: 81 WNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAI 140
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K L P V L+N+ + G +++A F+ P KNS+ W +I +N +
Sbjct: 141 KLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFE 200
Query: 134 LFKDKQWRYTSMNPTTFRSALKA 156
LF + ++P ++A
Sbjct: 201 LFSRMRRSGFELDPFVVEGLIQA 223
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/371 (28%), Positives = 176/371 (47%), Gaps = 54/371 (14%)
Query: 49 ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP 108
+ + L++C + + G + YM ++ + +G LI++ S+CG ++ A F
Sbjct: 271 LVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMK 330
Query: 109 EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYR 168
EKN L+W+ +I+ +G +AL+LF + + N TF L A + LV E
Sbjct: 331 EKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCS 390
Query: 169 LFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRV 228
F SM +Y ++P+ H+ MV+ GRAGM ++ IK + P K IW LL + R+
Sbjct: 391 FFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSM-PFKPNSAIWGALLNACRI 449
Query: 229 HGDMKLAKYALDKLLELDP---GMYV-------------------------------GC- 253
HGD +L + +LLELDP G YV GC
Sbjct: 450 HGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCS 509
Query: 254 WIEIQNKIYEFVSNEELTSE---VSDKLAEIEENMKELGFVLNRS--------------- 295
+I++ + I+EFV+ + + + KL E+ + +K G+ +
Sbjct: 510 FIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETAL 569
Query: 296 LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHF 355
+ ++ A+A GLI G R+ K++ +C HSA + +S I RE++V+D FHHF
Sbjct: 570 CHHSEKLAIAFGLIKTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHF 629
Query: 356 KDGKCSCKDAY 366
+DG CSC D +
Sbjct: 630 RDGSCSCMDFW 640
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 14/154 (9%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F D ++ +L +C L +G +++ K G S +V N L+ + + CG I+ A L
Sbjct: 133 FPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGL 192
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM---NPTTFRSALKAYAL 159
F TPE + SW +I + G +FK + + +M + ++ + Y
Sbjct: 193 VFDRTPECDGASWNIMIGGYLKCG-------VFKSARRMFEAMPDRDVVSWSVMINGYVQ 245
Query: 160 MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
E LF M IEP+E S++V AL
Sbjct: 246 ESRFKEGLGLFQDMMG-EKIEPNE---SVLVNAL 275
>gi|218193953|gb|EEC76380.1| hypothetical protein OsI_13992 [Oryza sativa Indica Group]
Length = 822
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/404 (27%), Positives = 182/404 (45%), Gaps = 56/404 (13%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+L+ + Y+ + ++Q D +I I+ + N + + A +
Sbjct: 424 WNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIPAFTNLVASWKVREIHACIF 483
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
L + N LIN S+ G + A F +N +SW II A V HG P+EALD
Sbjct: 484 HHNLELDGKIANALINAYSKSGNLASACAVFDMHSSRNIISWNCIILAHVLHGSPNEALD 543
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF + + TT + +KAY L G V E + F +M Y+I P +HY+ MV+ L
Sbjct: 544 LFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTFFNMANDYNITPELDHYAAMVDLL 603
Query: 194 GRAGMFEEVLEFIK--GIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG--- 248
GR+G +E E I ++P +W T L ++ +HG+++LA A +L +DPG
Sbjct: 604 GRSGRLKEAYELIDEMPLIPNS---TVWDTFLTAAVMHGNVRLAHLAARELSAIDPGDPR 660
Query: 249 -MYVG------------------------------CWIEIQNKIYEFVSNEELTSEVSDK 277
+G C IEI+NK+Y F + + + E D
Sbjct: 661 VQRLGSSLQDLTGKTVDVPEEMTPNKGRNLDEVESCSIEIRNKVYVFSNGDNVGLE--DT 718
Query: 278 LAEIEENMKELGFVL---------------NRSLYQTKMKAVALGLISFPHGMPTRVIKS 322
+AE++ M ++G + + A+A GL + P R+IK+
Sbjct: 719 VAELKSMMFKMGHSMLDIGIGTLDVEEEKEEVVGVHCEKLAIAFGLSNSPQFKNIRIIKT 778
Query: 323 VGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
MC + H+ + +S R +++KDP H F+DGKCSC+D +
Sbjct: 779 ARMCNHCHTFAKLVSEKYGRHILIKDPKCLHKFEDGKCSCEDYW 822
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 86/196 (43%), Gaps = 1/196 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ + + R++L + SI +++C + LLN + ++
Sbjct: 251 VTWTSLVSGFVHMDRSDEALRCFIRMRLAGVEPNGMSIACAISACASLKLLNQAKELHSH 310
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G +++ GN L+++ ++CG+I A F P+K+ SW +IS G+ +A
Sbjct: 311 AIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPDKDIFSWNSMISGYAQAGYCGKA 370
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+LF + N T+ + + Y G A+ LF ME + ++ ++I++
Sbjct: 371 YELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFELFQMMES-HGVKRDTATWNILIA 429
Query: 192 ALGRAGMFEEVLEFIK 207
G ++ + +
Sbjct: 430 GSVHNGYYDRAIRIFR 445
Score = 38.1 bits (87), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 3/134 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGL---ISHPAVGNCLININSRCGKIDDAD 101
D + I IL +C L +G + +RG + VGN ++ + ++CG + A
Sbjct: 110 DRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGWAR 169
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
F ++ +W +I EA L + T T+ + + +YA G
Sbjct: 170 KVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSYARFG 229
Query: 162 LVGEAYRLFLSMEE 175
+ A L MEE
Sbjct: 230 DLDVAMELLGQMEE 243
>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Brachypodium distachyon]
Length = 940
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 181/377 (48%), Gaps = 61/377 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS ++ IL + L G + ++ +R A+ + L+++ S CG + A F
Sbjct: 566 DSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVF 625
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ K+ + WT +I+A HGH +A+DLFK + + +F + L A + LV
Sbjct: 626 NAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVN 685
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E M Y +EP +EHY+ +V+ LGR+G EE EFIK + P K ++W +LL
Sbjct: 686 EGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSM-PLKPKSVVWCSLLG 744
Query: 225 SSRVHGDMKLAKYALDKLLEL---DPGMYV------------------------------ 251
+ RVH + +LA A ++LLEL +PG YV
Sbjct: 745 ACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKD 804
Query: 252 -GC-WIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENM-KELGF--------------- 290
C WIEI N ++ F + + ++ KLAEI E + KE G+
Sbjct: 805 PACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDVSEEE 864
Query: 291 ---VLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
VL+R ++ A++ GLI+ GMP R+ K++ +CG H + +S + +R++VV+
Sbjct: 865 KVDVLHR---HSERLAISFGLINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVR 921
Query: 348 DPGSFHHFKDGKCSCKD 364
D FHHF G CSC D
Sbjct: 922 DANRFHHFSGGSCSCGD 938
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ C++ + +L +Q ++SY+ +L C LN+G + A +
Sbjct: 234 WNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALL 293
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G + N L+ + ++CG++D A F+ EK+ +SW ++S V +G +EA++
Sbjct: 294 KSGSEVNIQC-NALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIE 352
Query: 134 LFKD 137
+
Sbjct: 353 FISE 356
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 4/147 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI--LLNVGTQAQ 69
I WN +L ++ Y E + + L GF ++ L+S + + LLN G +
Sbjct: 332 ISWNSMLSCYVQNGLYAEAIEFISEM-LRGGFQPDHACIVSLSSAVGHLGWLLN-GKEVH 389
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
AY K+ L S VGN L+++ +C I+ + F K+ +SWT II+
Sbjct: 390 AYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHI 449
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKA 156
EAL++F++ Q ++P S L+A
Sbjct: 450 EALEIFREAQKEGIKVDPMMIGSILEA 476
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 16/239 (6%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSC--LNPILLNVGTQAQ 69
I W ++ ++ + E+ Q +D I IL +C L ILL Q
Sbjct: 433 ISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILL--AKQLH 490
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
Y + GL+ V N +I+I CG++ + F++ +K+ ++WT +I+ N G +
Sbjct: 491 CYAIRNGLLD-LVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLN 549
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV----GEAYRLFLSMEEVYHIEPSEEH 185
EAL LF + Q T + P + A+ GL G+ FL + +H+E E
Sbjct: 550 EALVLFAEMQ--STDVQPDSVALVSILGAIGGLSSLAKGKEVHGFL-IRRNFHME--EAI 604
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
S +V+ G L+ + + ++W ++ ++ +HG K A ++L+
Sbjct: 605 VSSLVDMYSGCGSLSGALKVFNAVKCKDM--VLWTAMINATGMHGHGKQAIDLFKRMLQ 661
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 97/248 (39%), Gaps = 54/248 (21%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE-KNSLSWTFIISARV 123
G + K GL V N LI + ++CG +D A F+ + ++ SW +IS +
Sbjct: 183 GCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCL 242
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA--------------------------- 156
+G +ALDLF+ Q SMN T L+
Sbjct: 243 QNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQ 302
Query: 157 -------YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI 209
Y G V A R+F ++E +I ++ M+ + G++ E +EFI +
Sbjct: 303 CNALLVMYTKCGRVDSALRVFREIDEKDYIS-----WNSMLSCYVQNGLYAEAIEFISEM 357
Query: 210 VPGKLCPLIWRTLLLSSRVH------GDMKLAKYALDKLLELDP-------GMYVGC-WI 255
+ G P + LSS V ++ YA+ + L+ D MY+ C +I
Sbjct: 358 LRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYI 417
Query: 256 EIQNKIYE 263
E +++
Sbjct: 418 EYSAHVFD 425
>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
Length = 720
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 190/412 (46%), Gaps = 54/412 (13%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
L D+ W+ ++ ++ E +L R+ D +++ + +C N ++ G
Sbjct: 308 LTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQG 367
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Q + K + + ++++ ++CG ++DA F KN WT ++ + +H
Sbjct: 368 RQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASH 427
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
G A++LF+ + N T L A + +GLV E F M+E Y I PS EH
Sbjct: 428 GQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEH 487
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
Y+ +V+ GR+G+ ++ FI+ ++W+TLL + R+H + AK A +KL++L
Sbjct: 488 YNCIVDLYGRSGLLDKAKNFIEENNINHE-AIVWKTLLSACRLHQHNEYAKLASEKLVQL 546
Query: 246 ---DPGMYV--------------------------------GCWIEIQNKIYEFVSNEE- 269
D G YV WI ++N ++ FV+ +
Sbjct: 547 EQCDAGSYVMLSNIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDAS 606
Query: 270 --LTSEVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFP 312
++E+ L ++ E +KE+G+ L + ++ A+A G+IS P
Sbjct: 607 HPQSAEIYAYLEKLVERLKEIGYTSRTDLVVHDVEDEQRETALKFHSEKLAIAFGIISTP 666
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G P R+ K++ +C H A +++S RE+VV+D FHHFKD CSC+D
Sbjct: 667 SGTPLRIFKNLRVCEDCHEAIKYISLATGREIVVRDLYRFHHFKDASCSCED 718
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/132 (18%), Positives = 59/132 (44%), Gaps = 1/132 (0%)
Query: 14 WNLLLKACIKAKDY-EMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
W L + C + Y + + E + +++ + ++ C + G + +M
Sbjct: 79 WTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWM 138
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
+ G+ + N ++++ ++CG+ + A F + E++++SW I A + G ++
Sbjct: 139 LRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSM 198
Query: 133 DLFKDKQWRYTS 144
LF + R T+
Sbjct: 199 QLFDESPLRDTT 210
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 182/377 (48%), Gaps = 58/377 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ +++ L+ C L+ G Q + K G V + L+++ ++CG ++DA++ F
Sbjct: 391 NEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVF 450
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++++SW II HG +AL F+ T + TF L A + MGL+
Sbjct: 451 DGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIE 510
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTL 222
E + F S+ ++Y I P+ EHY+ MV+ LGRAG F EV FI+ + KL LIW T+
Sbjct: 511 EGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEM---KLTSNVLIWETV 567
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP----------------GMY---------------- 250
L + ++HG+++ + A KL EL+P GM+
Sbjct: 568 LGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVK 627
Query: 251 --VGC-WIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRS--------- 295
GC W+E+ +++ F+S++ E+ KL ++ + + +G+ N
Sbjct: 628 KEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDR 687
Query: 296 ------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
Y ++ A+A L+S R+ K++ +CG H + +S I +ELVV+D
Sbjct: 688 EKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDI 747
Query: 350 GSFHHFKDGKCSCKDAY 366
FHHFK+G CSC++ +
Sbjct: 748 NCFHHFKNGSCSCQNFW 764
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 83/198 (41%), Gaps = 3/198 (1%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y+ IL SC + +++G Q A + K L + VG L+++ ++ ++DA+ F
Sbjct: 292 YTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNR 351
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
+++ +WT I++ G +A+ F Q N T S+L + + + ++
Sbjct: 352 LIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATL-DS 410
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226
R SM S +V+ + G E+ G+V + W T++
Sbjct: 411 GRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRD--TVSWNTIICGY 468
Query: 227 RVHGDMKLAKYALDKLLE 244
HG A A + +L+
Sbjct: 469 SQHGQGGKALKAFEAMLD 486
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 23/150 (15%)
Query: 29 MVHELLERIQLCCGFIDS----------------------YSICDILNSCLNPILLNVGT 66
M+ L R L GF D+ Y+ IL +C + LN G
Sbjct: 152 MIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGK 211
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ K G+ + N L+N+ ++CG + A F PE++ +SWT +I+ V G
Sbjct: 212 AIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEG 271
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ S L +F + N TF S L++
Sbjct: 272 YGS-GLRIFNQMLAEGFNPNMYTFISILRS 300
>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Glycine max]
Length = 780
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/409 (26%), Positives = 184/409 (44%), Gaps = 54/409 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
E+ WN ++ ++ D E L + + +L + + + L G Q +
Sbjct: 373 EVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHS 432
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K V N LI++ ++CG+IDDA L F +++ +SW +I HG E
Sbjct: 433 LTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGME 492
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL+LF Q + N TF L A + GL+ + F SM + Y IEP EHY+ MV
Sbjct: 493 ALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMV 552
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
LGR+G F+E ++ I G +P + ++WR LL + +H ++ L K ++LE++P
Sbjct: 553 WLLGRSGQFDEAVKLI-GEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDD 611
Query: 248 -------GMYVGC-------------------------WIEIQNKIYEFVSNEELTSEVS 275
MY W+E Q ++ F + +
Sbjct: 612 ATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIK 671
Query: 276 DKLAEIE---ENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGMPT 317
A +E + ++ G+V + S+ ++ A+A GLI P G
Sbjct: 672 LIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQIPSGCSI 731
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+IK++ +C H+ + +S I++RE+V++D FHHF+ G CSC D +
Sbjct: 732 RIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 80/148 (54%), Gaps = 1/148 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQA 70
IPW+L++ ++ + EL R++ + ++++ +L +C + +LLN+G Q +
Sbjct: 272 IPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHS 331
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K GL S+ V N L+++ ++CG+I+++ F + EKN ++W II V G +
Sbjct: 332 CVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEK 391
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYA 158
AL+LF + T+ S L+A A
Sbjct: 392 ALNLFSNMLGLDIQPTEVTYSSVLRASA 419
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 86/203 (42%), Gaps = 4/203 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
++++I L SC VG K VG L+ + ++ G+I +A F
Sbjct: 204 NNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFF 263
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF-KDKQWRYTSMNPTTFRSALKAYALMGLV 163
+ P+ + + W+ +IS EAL+LF + +Q N TF S L+A A + L+
Sbjct: 264 EEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLL 323
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
++ + +V ++ + + +++ + G E ++ G + W T++
Sbjct: 324 NLGNQIHSCVLKV-GLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKN--EVAWNTII 380
Query: 224 LSSRVHGDMKLAKYALDKLLELD 246
+ GD + A +L LD
Sbjct: 381 VGYVQLGDGEKALNLFSNMLGLD 403
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 13/119 (10%)
Query: 51 DILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK 110
D+ ++CL+ AY+ K G + VG LI+ S CG +D A F K
Sbjct: 118 DLADTCLS---------VHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFK 168
Query: 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
+ +SWT +++ + ++L LF Q R P F + + GL EA+++
Sbjct: 169 DMVSWTGMVACYAENYCHEDSLLLF--CQMRIMGYRPNNFTISAALKSCNGL--EAFKV 223
>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 786
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 186/376 (49%), Gaps = 55/376 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+SY++ +L+ + L+ G Q K G I +V N LI + ++ G I A AF
Sbjct: 412 NSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAF 471
Query: 105 KSTP-EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
E++++SWT +I A HGH EAL+LF+ + T+ A GLV
Sbjct: 472 DLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLV 531
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ + F M++V I P+ HY+ MV+ GRAG+ +E EFI+ + P + + W +LL
Sbjct: 532 NQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM-PIEPDVVTWGSLL 590
Query: 224 LSSRVHGDMKLAKYALDKLLELDP----------GMYVGC-------------------- 253
+ RVH ++ L K A ++LL L+P +Y C
Sbjct: 591 SACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKK 650
Query: 254 -----WIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVLNRS---------- 295
WIE+++K++ F + +E+ + +I + +K++G+V + +
Sbjct: 651 EQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEV 710
Query: 296 -----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
+ ++ A+A GLIS P R++K++ +C H+A +F+S ++ RE++V+D
Sbjct: 711 KEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTT 770
Query: 351 SFHHFKDGKCSCKDAY 366
FHHFKDG CSC+D +
Sbjct: 771 RFHHFKDGFCSCRDYW 786
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD--L 102
D +++ +L++C N L +G Q +++ G V N LI++ SRCG ++ A +
Sbjct: 278 DRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLI 337
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
+ T + +T ++ + G ++A ++F + R + + + + Y G
Sbjct: 338 EQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDR----DVVAWTAMIVGYEQHGS 393
Query: 163 VGEAYRLFLSM 173
GEA LF SM
Sbjct: 394 YGEAINLFRSM 404
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 40/157 (25%)
Query: 28 EMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL 87
+MV E +E Q +++ ++L S + G + +++ K GL + +V N L
Sbjct: 136 DMVKEGIEPTQ--------FTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSL 187
Query: 88 ININSRCG----------------------------KIDDADLA---FKSTPEKNSLSWT 116
+N+ ++CG ++ DLA F+ E++ ++W
Sbjct: 188 LNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWN 247
Query: 117 FIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSA 153
+IS G+ ALD+F K R + ++P F A
Sbjct: 248 SMISGFNQRGYDLRALDIFS-KMLRDSLLSPDRFTLA 283
>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 754
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 174/377 (46%), Gaps = 55/377 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ +L+ C + + G Q A K G +S V LI++ ++CG I+ A AF
Sbjct: 377 DLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAF 436
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ ++WT +I+ HG +AL +F+D N TF L A + G+V
Sbjct: 437 LEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNTVTFVGVLSACSHAGMVS 496
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+A F M++ Y I+P +HY MV+ R G E+ L FIK + + IW +
Sbjct: 497 QALNYFEIMQKKYKIKPVMDHYECMVDMFVRLGRLEQALNFIKKM-NYEPSEFIWSNFIA 555
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMYVGC--------------------- 253
R HG+++L YA ++LL L P MY+
Sbjct: 556 GCRSHGNLELGFYASEQLLSLKPKDPETYVLLLNMYLSADRFDDVSRVRKMMEVEKVGKL 615
Query: 254 ----WIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVL-------------- 292
WI I++K+Y F +N++ +S + L ++ K LG+ +
Sbjct: 616 KDWSWISIKDKVYSFKTNDKTHPPSSLICKSLEDLLAKAKNLGYEMLESVEISDEEEEEK 675
Query: 293 --NRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
+ ++Y ++ A+ GL + P+ P RV+KS +C SH+ + +ST+ RE++VKD
Sbjct: 676 TSSPTIYHSEKLAITFGLENLPNSSPIRVVKSTLICRDSHNFIKCVSTLTGREIIVKDSK 735
Query: 351 SFHHFKDGKCSCKDAYG 367
H F +G+CSC + G
Sbjct: 736 RLHKFVNGECSCGNFGG 752
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 71/143 (49%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ ++ + + + + + Y++ +L++C + L +G Q AY
Sbjct: 131 VAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQSLKLGDQFHAY 190
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K L +VG+ L ++ S+CG+++DA AF EKN +SWT +SA ++G P +
Sbjct: 191 IIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIREKNVISWTSAVSACGDNGAPVKG 250
Query: 132 LDLFKDKQWRYTSMNPTTFRSAL 154
L LF + N T SAL
Sbjct: 251 LRLFVEMISEDIKPNEFTLTSAL 273
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 77/156 (49%), Gaps = 7/156 (4%)
Query: 52 ILNSCLNPILLNVGTQ-AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK 110
+L CL+ + GTQ ++ K G + V + L+N+ ++CG ++DA F++ P +
Sbjct: 70 LLQQCLDKRSYS-GTQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFENMPRR 128
Query: 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA-YALMGL-VGEAYR 168
N ++WT ++ V + P A+ +F++ + + + T + L A +L L +G+ +
Sbjct: 129 NVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQSLKLGDQFH 188
Query: 169 LFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
++ YH++ S + + G E+ L+
Sbjct: 189 AYIIK---YHLDFDTSVGSALCSLYSKCGRLEDALK 221
>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g52630-like [Cucumis sativus]
Length = 598
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 179/376 (47%), Gaps = 55/376 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
++ ++ ++ C + L +G K S VG+ LI++ S+CG I+ A
Sbjct: 225 VNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQV 284
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F P +N W ++ A H H LF++ N +F S L A + GLV
Sbjct: 285 FDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLV 344
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E R + S+ Y IEP EHY+ +V+ LGRAG +E + IK + P + +W LL
Sbjct: 345 -EKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQM-PMRPTESVWGALL 402
Query: 224 LSSRVHGDMKLAKYALDKLLELD---PGMYV----------------------------- 251
R+H D ++A + D++LE+D G++V
Sbjct: 403 TGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKK 462
Query: 252 ---GCWIEIQNKIYEFVSNEELTS---EVSDKLAEIEENMKELGFVLNRSL--------- 296
W+E NK++ F + + + E+ +KL E+EE M++ G+V + S
Sbjct: 463 ETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDGEE 522
Query: 297 ------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
Y ++ A+A GLI+FP G P RV+K++ +CG H+A +FMS R L+V+D
Sbjct: 523 KNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNN 582
Query: 351 SFHHFKDGKCSCKDAY 366
FH F+DGKCSC D +
Sbjct: 583 RFHRFEDGKCSCGDYW 598
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%)
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
+VG K G VG+ L+++ ++CG+I DA F PE+N +SW+ +I
Sbjct: 143 DVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGY 202
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALK 155
EAL LFK +N TF S ++
Sbjct: 203 AQLDDGVEALTLFKQALIEDVDVNDFTFSSVIR 235
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%)
Query: 49 ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP 108
IC++L S L G Q A++ K GL + P V + LIN+ S+ + F TP
Sbjct: 28 ICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETP 87
Query: 109 EKNSLSWTFIISARVNHGHPSEALDLFK 136
+K+S +W+ +ISA + P AL F+
Sbjct: 88 KKSSTTWSSVISAFAQNEAPLLALQFFR 115
>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 743
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/376 (29%), Positives = 179/376 (47%), Gaps = 56/376 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ +++SC N L G Q GLI V N LI + +CG ++ A F
Sbjct: 370 DDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLF 429
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++ +SWT ++S G +E + LF+ + TF L A + GLV
Sbjct: 430 HEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVE 489
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ Y F M + + I P +HY+ M++ L RAG EE FI + P + W TLL
Sbjct: 490 KGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQM-PFSPDAIGWATLLS 548
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMYVG---------------------- 252
S R++G++++ K+A + L +L+P +Y
Sbjct: 549 SCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKE 608
Query: 253 ---CWIEIQNKIYEFVSNEELTSEVSDK---------LAEIEEN-MKELGFVLNRSLYQT 299
WI+ +NK++ F S ++ +S SD+ L IEE + ++ FVL+
Sbjct: 609 PGHSWIKYKNKVHIF-SADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVLHDVEKSE 667
Query: 300 KMK---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
K+K A+A GL+ P G+ RV+K++ +CG H+A +++S I +RE++V+D
Sbjct: 668 KIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQREILVRDAV 727
Query: 351 SFHHFKDGKCSCKDAY 366
FH FKDG CSC D +
Sbjct: 728 RFHLFKDGVCSCGDFW 743
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 42 GF-IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDA 100
GF +D ++ +L +C + L+ G Q AY+ + + VG+ L+++ +C + A
Sbjct: 265 GFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYA 324
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
+ F+ KN +SWT ++ +G+ EA+ +F D Q
Sbjct: 325 EAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQ 363
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 33/142 (23%)
Query: 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK 105
++S IL+S N +++G Q + K G S+ VG+ L+++ ++ G I+DA+ F+
Sbjct: 140 TFSTMLILSS--NRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFE 197
Query: 106 STPEKN-------------------------------SLSWTFIISARVNHGHPSEALDL 134
PEKN S+SWT II+ +G EA+D
Sbjct: 198 EIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDK 257
Query: 135 FKDKQWRYTSMNPTTFRSALKA 156
FK+ M+ TF S L A
Sbjct: 258 FKEMGIEGFCMDQFTFGSVLTA 279
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N LIN + G + +A F P+ N SW ++SA G+ +D Q + S
Sbjct: 44 NNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKLGY-------LQDMQRVFDS 96
Query: 145 M---NPTTFRSALKAYALMGLVGEAYRLFLSM 173
M + ++ S L YA GL+ E+ R++ M
Sbjct: 97 MPNHDVVSWNSLLSGYAGNGLISESVRVYNMM 128
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
[Vitis vinifera]
Length = 1005
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 182/377 (48%), Gaps = 58/377 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ +++ L+ C L+ G Q + K G V + L+++ ++CG ++DA++ F
Sbjct: 632 NEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVF 691
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++++SW II HG +AL F+ T + TF L A + MGL+
Sbjct: 692 DGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIE 751
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTL 222
E + F S+ ++Y I P+ EHY+ MV+ LGRAG F EV FI+ + KL LIW T+
Sbjct: 752 EGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEM---KLTSNVLIWETV 808
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP----------------GMY---------------- 250
L + ++HG+++ + A KL EL+P GM+
Sbjct: 809 LGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVK 868
Query: 251 --VGC-WIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRS--------- 295
GC W+E+ +++ F+S++ E+ KL ++ + + +G+ N
Sbjct: 869 KEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDR 928
Query: 296 ------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
Y ++ A+A L+S R+ K++ +CG H + +S I +ELVV+D
Sbjct: 929 EKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDI 988
Query: 350 GSFHHFKDGKCSCKDAY 366
FHHFK+G CSC++ +
Sbjct: 989 NCFHHFKNGSCSCQNFW 1005
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 57/108 (52%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L +C + LN G + K G+ + N L+N+ ++CG + A F PE++
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159
+SWT +I+ V G+ S A++LF + + N T+ +ALKA ++
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSM 241
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 97/234 (41%), Gaps = 5/234 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQA 70
I WN LL + + + ++ L GF + Y+ IL SC + +++G Q A
Sbjct: 498 ISWNALLSGFHDNETCDTGLRIFNQM-LAEGFNPNMYTFISILRSCSSLSDVDLGKQVHA 556
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K L + VG L+++ ++ ++DA+ F +++ +WT I++ G +
Sbjct: 557 QIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEK 616
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+ F Q N T S+L + + + ++ R SM S +V
Sbjct: 617 AVKCFIQMQREGVKPNEFTLASSLSGCSRIATL-DSGRQLHSMAIKAGQSGDMFVASALV 675
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+ + G E+ G+V + W T++ HG A A + +L+
Sbjct: 676 DMYAKCGCVEDAEVVFDGLVSRD--TVSWNTIICGYSQHGQGGKALKAFEAMLD 727
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN LL + D E V L R+ +++ +L C N L G +
Sbjct: 296 VSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSL 355
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G + CL+++ S+CG DA F + + +SW+ II+ G EA
Sbjct: 356 AIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREA 415
Query: 132 LDLFKDKQWRYTSMNPTTFRSA 153
++F K+ R++ + P F A
Sbjct: 416 AEVF--KRMRHSGVIPNQFTLA 435
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 83/210 (39%), Gaps = 45/210 (21%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ L +C + L G Q A K G S VG+ L+++ ++CG++ A+ F
Sbjct: 228 NEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVF 287
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA-------- 156
P++N++SW +++ G + L+LF + + T + LK
Sbjct: 288 LCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLR 347
Query: 157 ---------------------------YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
Y+ GL G+A ++F+ +E +P +S +
Sbjct: 348 AGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIE-----DPDVVSWSAI 402
Query: 190 VEALGRAGMFEEVLEFIK-----GIVPGKL 214
+ L + G E E K G++P +
Sbjct: 403 ITCLDQKGQSREAAEVFKRMRHSGVIPNQF 432
>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
Length = 805
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 176/373 (47%), Gaps = 55/373 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS ++ +L +C + L G + Y+ + G S V N L+++ +CG + A L F
Sbjct: 431 DSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF 490
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P K+ +SWT +I+ HG+ +EA+ F + + + +F S L A + GL+
Sbjct: 491 DMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLE 550
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ +R F M+ ++IEP EHY+ MV+ L R G + EF++ +P IW LL
Sbjct: 551 QGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFME-TLPIAPDATIWGALLC 609
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
R + D++LA+ +++ EL+P G YV
Sbjct: 610 GCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKN 669
Query: 252 -GC-WIEIQNKIYEFVSNEEL----TSEVSDKLAEIEENMKELGF-------VLNRSLYQ 298
GC WIEI+ K+ FVS + + L ++ MKE G ++N Q
Sbjct: 670 PGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQ 729
Query: 299 TKMK--------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
+M A+A GL++ P RV K++ +CG H +FMS RE+V++D
Sbjct: 730 KEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSN 789
Query: 351 SFHHFKDGKCSCK 363
FHHFKDG CSC+
Sbjct: 790 RFHHFKDGYCSCR 802
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 3/160 (1%)
Query: 2 KLCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL 61
KLC DV I WN ++ + E + +++ +D +I +L C N
Sbjct: 210 KLCD--RDV-ISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGT 266
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L++G + K N L+++ S+CG +D A F+ E+N +SWT +I+
Sbjct: 267 LSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 326
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
G A+ L + + ++ S L A A G
Sbjct: 327 YTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSG 366
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 53/108 (49%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + + +LL++++ +D +I IL++C L+ G Y
Sbjct: 318 VSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY 377
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
+ + S+ V N L+++ ++CG ++ A+ F + K+ +SW +I
Sbjct: 378 IKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI 425
>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Brachypodium distachyon]
Length = 750
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 178/377 (47%), Gaps = 58/377 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ +++SC N L G Q GL + V N L+ + +CG I+DA F
Sbjct: 377 DDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLF 436
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ +SWT ++ G E +DLF+ + + TF L A + GLV
Sbjct: 437 DEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVD 496
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTL 222
+ F SM++ + I P ++HY+ M++ R+G ++ EFIK + CP W TL
Sbjct: 497 KGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQM---PRCPDAFGWATL 553
Query: 223 LLSSRVHGDMKLAKYALDKLLELD---PGMYV---------------------------- 251
L + R+ GDM++ K+A + LL+LD P YV
Sbjct: 554 LSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVK 613
Query: 252 ---GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS--------- 295
GC WI+ +NK++ F ++++ + + +KL + M E G+ + S
Sbjct: 614 KEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSVLHDVADA 673
Query: 296 ------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
+ ++ A+A GLI P MP R++K++ +C H+A +F+S I R+++V+D
Sbjct: 674 EKVHMLSHHSEKLAIAFGLIFVPPEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDA 733
Query: 350 GSFHHFKDGKCSCKDAY 366
FH F +G CSC D +
Sbjct: 734 VRFHKFSNGICSCGDFW 750
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 1/191 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W ++ + ++ R++ ID Y+ IL +C L G Q AY
Sbjct: 243 ITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAY 302
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+T+ + VG+ L+++ S+C + A+ F+ KN +SWT +I +G EA
Sbjct: 303 ITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEA 362
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ +F + Q + T S + + A + + E + F + V + P + +V
Sbjct: 363 VRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLRPYVTVSNALVT 421
Query: 192 ALGRAGMFEEV 202
G+ G E+
Sbjct: 422 LYGKCGSIEDA 432
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I RC + +A F++ E++S++WT +++ +G SEALD+F+ +
Sbjct: 215 NTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVG 274
Query: 145 MNPTTFRSALKAYALMGLVGEAYRL 169
++ TF S L A + + E ++
Sbjct: 275 IDQYTFGSILTACGALAALEEGKQI 299
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 176/375 (46%), Gaps = 60/375 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L +C + + G + Y+ + G S V N L+++ ++CG + A L F
Sbjct: 498 DERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLF 557
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGL 162
K+ +SWT +I+ HG EA+ LF Q R + P +F S L A + GL
Sbjct: 558 DDITSKDLVSWTVMIAGYGMHGFGKEAIALFN--QMRQAGIEPDEISFVSLLYACSHSGL 615
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V E +R F M IEP+ EHY+ +V+ L R G + FI+ + P IW L
Sbjct: 616 VDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENM-PIPPDATIWGAL 674
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------------------------- 251
L R+H D+KLA+ +K+ EL+P G YV
Sbjct: 675 LCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLR 734
Query: 252 ---GC-WIEIQNKIYEFV----SNEELTSEVSDKLAEIEENMKELGF--VLNRSLY---- 297
GC WIEI+ ++ FV SN E T ++ L + M E G+ + +L
Sbjct: 735 KNPGCSWIEIKGRVNIFVAGDSSNPE-TEKIEAFLRGVRARMIEEGYSPLTKYALIDAEE 793
Query: 298 ---------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
++ A+ALG+IS HG RV K++ +CG H +FMS + RE+V++D
Sbjct: 794 MEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRD 853
Query: 349 PGSFHHFKDGKCSCK 363
FH FKDG CSC+
Sbjct: 854 SNRFHQFKDGHCSCR 868
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+L+ K+ D+ L +++ +DSY+ + S + +N G Q Y+
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYIL 222
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G +VGN L+ + ++D A F E++ +SW II+ V++G + L
Sbjct: 223 KSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 282
Query: 134 LF 135
+F
Sbjct: 283 VF 284
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y++ +LN C LL+ G + ++ + + V N L+++ ++CG + +A+L F
Sbjct: 396 DVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVF 455
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
K+ +SW +I + + +EAL LF
Sbjct: 456 SEMRVKDIISWNTVIGGYSKNCYANEALSLF 486
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 58/126 (46%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
ID +I + C + L+++G + K N L+++ S+CG +D A +
Sbjct: 294 IDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVV 353
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F+ ++ +S+T +I+ G EA+ LF++ + S + T + L A L+
Sbjct: 354 FREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLL 413
Query: 164 GEAYRL 169
E R+
Sbjct: 414 DEGKRV 419
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 50/115 (43%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
ID ++C +L C + L G + ++ G + +G+ L + + CG + +A
Sbjct: 92 IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRV 151
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
F + +L W +++ G S ++ LFK M+ TF K+++
Sbjct: 152 FDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFS 206
>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
Length = 1084
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/415 (27%), Positives = 192/415 (46%), Gaps = 69/415 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV-----GT 66
I WN L+ Y + E L + + + +C+ P + ++ G
Sbjct: 679 ISWNTLIGG------YSRNNFANESFSLFSDMLLQFKPNTVTMTCILPAVASISSLERGR 732
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ AY +RG + N L+++ +CG + A + F +KN +SWT +I+ HG
Sbjct: 733 EIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHG 792
Query: 127 HPSEALDLFKDKQWRYTSMNPTT--FRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
+A+ LF +Q R + + P T F + L A GL E ++ F +M + Y IEP +
Sbjct: 793 CGKDAVALF--EQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLK 850
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
HY+ +V+ L G +E EFI+ + P + IW +LL R+H D+KLA+ D++ +
Sbjct: 851 HYTCIVDLLSHTGNLKEAFEFIESM-PIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFK 909
Query: 245 LDP---GMYV-------------------------------GC-WIEIQNKIYEFVSNEE 269
L+P G YV GC WIE++ K++ F+++
Sbjct: 910 LEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADNR 969
Query: 270 LTSE---VSDKLAEIEENMKELGF--------------VLNRSLYQTKMK-AVALGLISF 311
E +++ L + M+E G V + +L K AV G++
Sbjct: 970 NHPEWNRIAEFLDHVARRMREEGHDPKKKYSLMGANDAVHDEALCGHSSKLAVTFGVLHL 1029
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P G P RV K+ +C + H A +F+S + RE++++D FHHF+ G+CSC+ +
Sbjct: 1030 PEGRPIRVTKNSKVCSHCHEAAKFISKMCNREIILRDSSRFHHFEGGRCSCRGHF 1084
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 5/162 (3%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVG 65
++DV + W L+ A KA D++ L ++Q CCG D++++ +L + + G
Sbjct: 160 VADVRV-WTSLMSAYAKAGDFQEGVSLFRQMQ-CCGVSPDAHAVSCVLKCIASLGSITEG 217
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ K GL AV N LI + SRCG ++DA F S ++++SW IS ++
Sbjct: 218 EVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSN 277
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG--LVGE 165
G A+DLF T ++ T S L A A +G LVG+
Sbjct: 278 GWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGK 319
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 136/305 (44%), Gaps = 48/305 (15%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILN--SCLNPILLNVGTQAQAY 71
WNL++ KA ++E L E++ D +++ +L +CL+ G A Y
Sbjct: 378 WNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLS--CARDGLVAHGY 435
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + AV N LI+ ++ ID+A L F P ++++SW +IS ++G SEA
Sbjct: 436 LVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEA 495
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA-----YALMGLVGEAYRL----------------- 169
++LF + ++ TT S L A Y +G V Y +
Sbjct: 496 IELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDM 555
Query: 170 ------FLSMEEVYH--IEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221
+ S +++ + + ++ M+ + RAG+F++V ++ +V + P ++
Sbjct: 556 YSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAV 615
Query: 222 LLLSSRVHGDMKLAK------YA----LDKLLELDPG---MYVGCW-IEIQNKIYEFVSN 267
+ GD L + YA ++KLL + MYV C +E +++ V+N
Sbjct: 616 TSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTN 675
Query: 268 EELTS 272
+++ S
Sbjct: 676 KDIIS 680
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ C EL R+ + +DS ++ +L +C VG Y
Sbjct: 477 ISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGY 536
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
K GLI ++ N L+++ S C + F++ +KN +SWT +I++ G
Sbjct: 537 SVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAG 591
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 1/147 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + +A ++ V LL+ + L D +++ +L+ L G Y
Sbjct: 578 VSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGY 637
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G+ V N L+ + C +++A L F K+ +SW +I + +E+
Sbjct: 638 AIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANES 697
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
LF D ++ N T L A A
Sbjct: 698 FSLFSDMLLQFKP-NTVTMTCILPAVA 723
>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Glycine max]
Length = 854
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/418 (26%), Positives = 200/418 (47%), Gaps = 64/418 (15%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
+++ + WN ++ A + D + L + ++ D ++ +L +C + LL +G
Sbjct: 444 MMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELG 503
Query: 66 TQAQAYMTK--RGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
QA ++ K + LI + N L+++ +CG ++DA F +K+ +SW+ +I+
Sbjct: 504 RQAHVHVLKFDQDLI----LNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLA 559
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
+G EAL+LF+ + + N T L A + GLV E + F SM +Y I+P
Sbjct: 560 QNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGR 619
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDK 241
EHY M++ LGRA E++ + +K I P + WRTLL + R ++ LA YA +
Sbjct: 620 EHYGCMLDLLGRA---EKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKE 676
Query: 242 LLELDP---GMYV-------------------------------GC-WIEIQNKIYEFVS 266
+L+LDP G YV GC WIE+ +I+ F+
Sbjct: 677 ILKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFIL 736
Query: 267 NEE---LTSEVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGL 308
++ E++ +L + + G+V + + Y ++ A+ G+
Sbjct: 737 GDKSHPQIDEINRQLNQFICRLAGAGYVPDTNFVLQDLEGEQREDSLRYHSEKLAIVFGI 796
Query: 309 ISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+SFP R+ K++ +CG H + ++ + +R +V++DP +HHF+DG CSC D +
Sbjct: 797 MSFPKEKTIRIWKNLKICGDCHKFAKLIAELEQRHIVIRDPIRYHHFQDGVCSCGDYW 854
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRG 76
LL C + +D +L+ ++ + DS + +++ CL + G + ++ G
Sbjct: 257 LLNHCYR-RDLPSAMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNG 315
Query: 77 LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDL-- 134
+ N LIN+ + +++A + F PE+N +SWT +ISA N A+ L
Sbjct: 316 YHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLA 375
Query: 135 --FKDKQWRYTSMNPTTFRSALKA----YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
F+D N TF S L+A Y L L ++ + + +E + S
Sbjct: 376 FMFRDG----VMPNMFTFSSVLRACERLYDLKQL--HSWIMKVGLESDVFVR------SA 423
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231
+++ + G E L+ + ++ G ++W +++ + H D
Sbjct: 424 LIDVYSKMGELLEALKVFREMMTGD--SVVWNSIIAAFAQHSD 464
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 3/152 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ A A+ + LL + + ++ +L +C L Q ++
Sbjct: 352 VSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDLK---QLHSW 408
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL S V + LI++ S+ G++ +A F+ +S+ W II+A H EA
Sbjct: 409 IMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEA 468
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
L L+K + + +T S L+A + L+
Sbjct: 469 LHLYKSMRRVGFPADQSTLTSVLRACTSLSLL 500
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/408 (25%), Positives = 193/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ ++ +L +Q+ D ++ +L++C + L +G ++Y
Sbjct: 194 VTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESY 253
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K+ + + N LI++ ++CG +D A F+ + +SWT +I+ HG +A
Sbjct: 254 VEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDA 313
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF + + + F L A + GLV + F SME + I P EHY MV+
Sbjct: 314 VSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVD 373
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
L R G +E EF++ + P + +IWRT++ + G++KL + +L++ +P
Sbjct: 374 LLCRGGFVKEAFEFVQKM-PFEPNQIIWRTIITACHATGELKLGESISKELIKSEPMHES 432
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNE---ELTSE 273
YV IE+ N++YEFV+ + + E
Sbjct: 433 NYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKE 492
Query: 274 VSDKLAEIEENMKELGFVLNRS--------------LYQTKMK-AVALGLISFPHGMPTR 318
+ + + E+ +K+ G+V S LY+ K A+A L++ P G R
Sbjct: 493 IYEMVDEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGTSIR 552
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +C HSA +F+S + RE+VV+D FHHFK+G CSC+D +
Sbjct: 553 IVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 105/234 (44%), Gaps = 6/234 (2%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYM 72
+N L++A + +D + L R L G + ++ +L C L +G +
Sbjct: 92 FNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGCV 151
Query: 73 TKRGLISHPAVGNCLININSRCGK--IDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K G V N LI++ G+ + A+ F +P+ ++++W+ +I+ V G S
Sbjct: 152 VKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSR 211
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+DLF++ Q + T S L A A +G + E + S E +I S E + ++
Sbjct: 212 AVDLFREMQVMGVCPDEITMVSVLSACADLGAL-ELGKWVESYVEKKNIPKSVELCNALI 270
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+ + G ++ ++ + + + + W +++ +HG A D+++E
Sbjct: 271 DMFAKCGNVDKAIKLFRQMDSRTI--VSWTSVIAGLAMHGRGLDAVSLFDEMVE 322
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/406 (27%), Positives = 188/406 (46%), Gaps = 54/406 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + + L +R++ +S + +L++C + +G Y
Sbjct: 178 VTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEY 237
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
GL + +G LIN+ +RCG + A F S E+N ++WT +IS +G+ S+A
Sbjct: 238 AVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQA 297
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
++LF + + N TF + L A A GLV E R+F SM E Y + P EH+ +V+
Sbjct: 298 VELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVD 357
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG--- 248
LGRAG+ +E FIK I + P IW +L + ++H + L + L +PG
Sbjct: 358 MLGRAGLLDEAYNFIKEIHE-EPAPAIWTAMLGACKMHKNFGLGAQVAEHRLASEPGNPA 416
Query: 249 ------------------------MYVGCW--------IEIQNKIYEFVSNEEL---TSE 273
M C I++ K Y F ++ T+E
Sbjct: 417 HYVILSNIYALAGRMDQVEMVRDNMIRKCLKKQVGYSTIDLDRKTYLFSMGDKSHTETNE 476
Query: 274 VSDKLAEIEENMKELGFV-LNRSL--------------YQTKMKAVALGLISFPHGMPTR 318
+ L ++ +E G+V ++ S+ Y ++ A+A GL+ G R
Sbjct: 477 IYHYLDQLMRKCREAGYVTVSDSVMHELEEEEREYALGYHSEKLAIAFGLLKTSRGTVIR 536
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
++K++ MC HSA +++S I RE++V+D FHHFK+G CSC D
Sbjct: 537 IVKNLRMCEDCHSAIKYISVISNREIIVRDKLRFHHFKNGSCSCLD 582
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+Y+ ++ SC + + L G ++ G S V L++ +CG + +A F
Sbjct: 110 SNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVF 169
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+++ ++W +IS +G EA+ LF + N TF S L A A +G
Sbjct: 170 DKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLG 226
>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 1011
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 112/416 (26%), Positives = 191/416 (45%), Gaps = 70/416 (16%)
Query: 12 IPWNLLLKACIKAKDYE--------MVHELLERIQLCCGFIDSYSICDILNSCLNPILLN 63
+ W ++ + YE MV EL+ +D ++ I+++C N +L
Sbjct: 605 VSWGSMVSGYVWNGKYEDGLKTFRLMVRELV--------VVDIRTVTTIISACANAGILE 656
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G AY+ K G VG+ LI++ S+ G +DDA + F+ + E N + WT +IS
Sbjct: 657 FGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYA 716
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
HG A+ LF++ + N TF L A + GL+ E R F M++ Y I P
Sbjct: 717 LHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYCINPGV 776
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
EH + MV+ GRAG + FI L +W++ L S R+H ++++ K+ + LL
Sbjct: 777 EHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTS-VWKSFLSSCRLHKNVEMGKWVSEMLL 835
Query: 244 EL---DPGMYV--------------------------------GCWIEIQNKIYEFVSNE 268
++ DPG YV WI+++++I+ FV +
Sbjct: 836 QVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGVKKQPGQSWIQLKDQIHTFVMGD 895
Query: 269 E---LTSEVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLIS 310
E+ L + +KE+G+ + L + ++ AV G+I+
Sbjct: 896 RSHPQDDEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFGIIN 955
Query: 311 FPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ P R+IK++ +C H+ ++ S +++RE++V+D FHHFK G CSC D +
Sbjct: 956 TANRTPIRIIKNLRICTDCHNFIKYASQLLDREIIVRDIHRFHHFKHGSCSCGDYW 1011
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 11 EIP------WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
EIP W +L+ +A EMV L +Q + Y++ +L C L +
Sbjct: 349 EIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQL 408
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G A+M + G+ +GN ++++ +C + A+ F+ E + +SW +I A +
Sbjct: 409 GKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLR 468
Query: 125 HGHPSEALDLFK 136
G ++LD+F+
Sbjct: 469 AGDVEKSLDMFR 480
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%)
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A K G + N L+ + ++ + A F P++N+ +WT +IS G
Sbjct: 312 HALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGSS 371
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159
+LF++ Q + N T S LK +L
Sbjct: 372 EMVFNLFREMQAKGACPNQYTLSSVLKCCSL 402
>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 654
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 127/415 (30%), Positives = 195/415 (46%), Gaps = 66/415 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQL-----CCGFIDSYSICDILNSCLNPILLNVGT 66
+ W+ ++ AC AK+ EM + LE Q+ C + ++ +L +C + L G
Sbjct: 246 VSWSAMI-ACY-AKN-EMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGK 302
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
AY+ +RGL S V N LI + RCG+I F +++ +SW +IS HG
Sbjct: 303 LVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHG 362
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
+A+ +F++ R S + TF + L A + GLV EA LF SM Y I P EHY
Sbjct: 363 LGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHY 422
Query: 187 SIMVEALGRAGMFEEVLEFIKGI--VPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+ MV+ LGRA +E +E I+ + PG P +W +LL S R+H +++LA+ A L E
Sbjct: 423 ACMVDILGRANRLDEAIELIQNMDFKPG---PTVWGSLLGSCRIHCNVELAERASAMLFE 479
Query: 245 LDP---GMYV-------------------------------GC-WIEIQNKIYEFVSNEE 269
L+P G YV C WIE++ KIY VS EE
Sbjct: 480 LEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSIEE 539
Query: 270 LTSEVSDKLA---EIEENMKELGFVLNRSLYQTKMK---------------AVALGLISF 311
++ + A + +K G+V ++ + AVA GLI+
Sbjct: 540 YNPQIEELCAFLITLLTEIKNQGYVPQTNVVTYDLDEEEKERIVLGHSGKLAVAFGLINT 599
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G R+ ++ +C H+ +F+S RE++++D FH FKDG CSC D +
Sbjct: 600 SKGEIIRISNNLRLCEDCHAFMKFVSKFTNREILLRDVNRFHCFKDGVCSCGDYW 654
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 105/244 (43%), Gaps = 25/244 (10%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL----LNVGTQAQ 69
WN + +A A E + L ++ + ++ +L +C+ L L G +
Sbjct: 143 WNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIH 202
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
A++ + G H V L+++ +R G + A F + P+KN +SW+ +I+ + P
Sbjct: 203 AHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPM 262
Query: 130 EALDLFKDKQWRY--TSMNPTTFRSALKAYALM-----GLVGEAYRLFLSMEEVYHIEPS 182
+AL+LF+ T NP T S L+A A + G + AY L ++ +
Sbjct: 263 KALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPV--- 319
Query: 183 EEHYSIMVEALGRAGMF---EEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239
+ ++ GR G + V +++K K + W +L+ +HG K A
Sbjct: 320 ---LNTLITMYGRCGEISTGQRVFDYMK-----KRDVISWNSLISIYGMHGLGKKAIQIF 371
Query: 240 DKLL 243
+ ++
Sbjct: 372 ENMI 375
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 40/105 (38%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
++NSC+ L+ G + GL P + LIN+ G +D A F T EK
Sbjct: 80 LINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDETREKT 139
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
W I A + L L+ W N T+ LKA
Sbjct: 140 IFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKA 184
>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
[Vitis vinifera]
gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 122/412 (29%), Positives = 194/412 (47%), Gaps = 61/412 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYS---ICDILNSCLNPILLNVGTQA 68
+ WN L+ +K + V E +E ++ G +S + IL C L G +
Sbjct: 245 VSWNSLIAGLVKK---DGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEI 301
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A + K V N L+++ ++CG +D F K+ SW +I+ +G
Sbjct: 302 HAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRM 361
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
+EA++ F++ S + TF + L + GL + RLF M+ Y I P+ EHY+
Sbjct: 362 TEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDYGISPTVEHYAC 421
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP- 247
+V+ LGRAG +E LE +K + P K IW +LL S R+HG++ LA+ +L EL+P
Sbjct: 422 LVDVLGRAGRIKEALEIVKNM-PFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPN 480
Query: 248 --GMYV-------------------------------GC-WIEIQNKIYEFV---SNEEL 270
G YV GC W++I++KI+ FV SNE
Sbjct: 481 NAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKIHTFVAGGSNEFR 540
Query: 271 TS-EVSDKLAEIEENMKELGFVLN------------RSLY---QTKMKAVALGLISFPHG 314
S E + E M+E+G+V + R+++ ++ A LI+ G
Sbjct: 541 NSVEYKKVWKRLMEAMEEVGYVPDTGVVLHDVSEEMRAMWVCGHSERLATMFALINTASG 600
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
MP R+ K++ +C HS + +S + R +V++D FHHFKDG CSCKD +
Sbjct: 601 MPIRITKNLRVCVDCHSWVKTLSKVTGRVIVLRDTNRFHHFKDGVCSCKDYW 652
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 47/238 (19%), Positives = 96/238 (40%), Gaps = 6/238 (2%)
Query: 9 DVEIPWNLLLKACIK-AKDYEMVHELLERIQLCCGF--IDSYSICDILNSCLNPILLNVG 65
DV++P ++ + I +++ LL ++ C F + +++ L +C + L G
Sbjct: 138 DVDLPESVWVAMGIGYSRNGYPKEALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLQTG 197
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
A + K V N L+ + S G D+A F P +N +SW +I+ V
Sbjct: 198 RAVHAQVLKATEDPDQVVNNALLRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAGLVKK 257
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
EA++ F+ Q + + T + L A + +G + + + +P
Sbjct: 258 DGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKST-AKPDAPV 316
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
+ +V+ + G + G+ L W TL+ ++G M A + +++
Sbjct: 317 LNSLVDMYAKCGAMDYCRRVFNGMQGKDLTS--WNTLITGYAINGRMTEAMESFQEMI 372
Score = 38.1 bits (87), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
Query: 77 LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLS---WTFIISARVNHGHPSEALD 133
L+++P + LI + S C ++D+A F+ E L W + +G+P EAL
Sbjct: 105 LLNNPTLKGKLITLFSVCRRVDEARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKEALL 164
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
L+ + ++ + F ALKA + +G + + + + +P + + ++
Sbjct: 165 LYYEMVCQFGQLGNFAFSMALKACSDLGDLQTGRAVHAQVLKATE-DPDQVVNNALLRLY 223
Query: 194 GRAGMFEEVLEFIKGI 209
G F+E L G+
Sbjct: 224 SEDGCFDEALRVFDGM 239
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 118/415 (28%), Positives = 188/415 (45%), Gaps = 59/415 (14%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
+ DV + WN+++ A + ++L ++Q D+ ILN+C + L
Sbjct: 293 VRDV-VSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVK 351
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ + GL VG L+++ S+ G IDDA + F +N +SW +IS HG
Sbjct: 352 KIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHG 411
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
+AL++F+ + TF + L A + GLV E +L+M +VY IEP H
Sbjct: 412 LGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHC 471
Query: 187 SIMVEALGRAGMFEEVLEFIKGIV--PGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+ MV+ LGRAG E FI + P + W LL S R +G+++L + + L+
Sbjct: 472 NCMVDLLGRAGRLMEAKLFIDNMAVDPDE---ATWGALLGSCRTYGNVELGELVAKERLK 528
Query: 245 LDP---GMYV--------------------------------GCWIEIQNKIYEFV---S 266
LDP YV WIE+ NKI++F+ S
Sbjct: 529 LDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADS 588
Query: 267 NEELTSEVSDKLAEIEENMKELGFVLNRSLY--QTKMK-------------AVALGLISF 311
+ E+++ ++ E +K G++ + L MK A+ GL+
Sbjct: 589 SHPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKDKELDICSHSEKLAIVYGLMHT 648
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P G P RV K++ +C H A + +S + RE++V+D FHHFKDG CSC D +
Sbjct: 649 PPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W +++ A ++ + + + L+ +++ ++ + ILN+C + L + +
Sbjct: 196 ISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRH 255
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
GL VG L+ + ++ G IDDA + F ++ +SW +I A HG EA
Sbjct: 256 ALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEA 315
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
DLF Q + F S L A A G
Sbjct: 316 YDLFLQMQTEGCKPDAIMFLSILNACASAG 345
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 28 EMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNC 86
E + L+ R+Q G I DS+ ++L CL L Q + K + + V N
Sbjct: 11 EAIVVLMNRLQR--GLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNN 68
Query: 87 LININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN 146
L+++ CG++ +A F + +K+ SW +I+ V H H +A+ LF++ N
Sbjct: 69 LLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPN 128
Query: 147 PTTFRSALKAYA 158
T+ LKA A
Sbjct: 129 AGTYMIILKACA 140
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 10/162 (6%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELL-----ERIQLCCGFIDSYSICDILNSCLNP 59
+L+ WN ++ ++ K E L E +Q G +Y I IL +C +
Sbjct: 88 ALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAG---TYMI--ILKACASL 142
Query: 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
L G + A + GL S VG L+ + +CG I++A F + + +SWT +I
Sbjct: 143 SALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMI 202
Query: 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
A G+ EA L + N T+ S L A A G
Sbjct: 203 GAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEG 244
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/409 (28%), Positives = 187/409 (45%), Gaps = 60/409 (14%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+++ ++ +L R+ + + ++ +L++C L G +Y+
Sbjct: 241 WNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIE 300
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+G+ + VG LI++ S+CG ++DA L F +K+ ++W +I HG AL
Sbjct: 301 NKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQ 360
Query: 134 LFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LF++ T PT TF L A GLV E F M + Y IEP EHY MV
Sbjct: 361 LFEEMT--ETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVN 418
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKL----AKYALDKLLELDP 247
LGRAG EE +K + P++W TLL R+H ++KL AK+ +D+ L +
Sbjct: 419 LLGRAGHLEEAYGLVKNMTIAA-DPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLA-NS 476
Query: 248 GMYV---------GCW-----------------------IEIQNKIYEFVSNEE---LTS 272
G YV G W IE+ NK++EFV+ E +
Sbjct: 477 GTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPKSK 536
Query: 273 EVSDKLAEIEENMKELGFVLNRSLYQTKMK---------------AVALGLISFPHGMPT 317
E+ L EI +K G+ + ++ A+A GLIS G
Sbjct: 537 EIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTKPGTTV 596
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+++K++ +C H+ + +S I R++V++D FHHF+DG CSC D +
Sbjct: 597 KIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M +R L+S + C S+ G++D A F+ E++ + W +I G P+E+
Sbjct: 202 MPERSLVSLTTMLTCY----SKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNES 257
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF+ N T + L A +G + E+ R S E I+ + + +++
Sbjct: 258 LKLFRRMLVAKAIPNEVTVLAVLSACGQLGAL-ESGRWIHSYIENKGIQINVHVGTALID 316
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
+ G E+ I + + W ++++ +HG +++AL E+
Sbjct: 317 MYSKCGSLEDARLVFDRIRDKDV--VAWNSMIVGYAMHG---FSQHALQLFEEM 365
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 10/163 (6%)
Query: 39 LCCGF-IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKI 97
L CG ++++ +L SC L G K GL S V L+++ +R G +
Sbjct: 137 LSCGVEPNAFTFSSVLKSCS----LESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDV 192
Query: 98 DDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAY 157
A F PE++ +S T +++ G +A LF+ + R + + + Y
Sbjct: 193 VCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKER----DVVCWNVMIGGY 248
Query: 158 ALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
A G+ E+ +LF M I P+E ++ A G+ G E
Sbjct: 249 AQSGVPNESLKLFRRMLVAKAI-PNEVTVLAVLSACGQLGALE 290
>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Glycine max]
Length = 691
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/375 (25%), Positives = 173/375 (46%), Gaps = 53/375 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D ++I ++ C L QA A + + G + L++ S+ G+++DA
Sbjct: 318 VDHFTISIVIRICARLASLEHAKQAHAALVRHGFATDIVANTALVDFYSKWGRMEDARHV 377
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F KN +SW +I+ NHG EA+++F+ + TF + L A + GL
Sbjct: 378 FNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPTHVTFLAVLSACSYSGLS 437
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ +F SM+ + ++P HY+ M+E LGR + +E I+ P K +W LL
Sbjct: 438 QRGWEIFYSMKRDHKVKPRAMHYACMIELLGRESLLDEAYALIR-TAPFKPTANMWAALL 496
Query: 224 LSSRVHGDMKLAKYALDKLLELDP----------------------------------GM 249
+ R+H +++L K A +KL ++P M
Sbjct: 497 TACRMHKNLELGKLAAEKLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGILQTLKKKGLRM 556
Query: 250 YVGC-WIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKEL---GFV-LNRSL-------- 296
C W+E++ + Y F+ ++ S+ + +++ M E+ G+ N +L
Sbjct: 557 LPACSWVEVKKQPYAFLCGDKSHSQTKEIYQKVDNLMVEICKHGYAEENETLLPDVDEEE 616
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ A+A GLI+ PH P ++ + +CG HSA + ++ + RE+VV+D
Sbjct: 617 QRILKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIKLIAMVTGREIVVRDASR 676
Query: 352 FHHFKDGKCSCKDAY 366
FHHF++G CSC D +
Sbjct: 677 FHHFRNGSCSCGDYW 691
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 30/186 (16%)
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L+ VG Q + KRG+ V LI++ S+CG I+DA F PEK ++ W II+
Sbjct: 234 LVQVGKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIA 293
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTT-------------FRSALKAYALMGLVGEA- 166
+ HG+ EAL L+ + + T+++ T A +A+A + G A
Sbjct: 294 SYALHGYSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFAT 353
Query: 167 -----------YRLFLSMEEVYHIEPSEEH-----YSIMVEALGRAGMFEEVLEFIKGIV 210
Y + ME+ H+ H ++ ++ G G +E +E + ++
Sbjct: 354 DIVANTALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQML 413
Query: 211 PGKLCP 216
+ P
Sbjct: 414 QEGVTP 419
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%)
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
YM G V N ++ ++ +CG + DA F PEK+ SW ++ V+ G+ SE
Sbjct: 143 YMINSGFEPDLYVMNRVLFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSE 202
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
A LF + TF + ++A A +GLV
Sbjct: 203 AFRLFLCMWKEFNDGRSRTFATMIRASAGLGLV 235
>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g16835, mitochondrial; AltName: Full=Protein DYW10;
Flags: Precursor
gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 656
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 176/380 (46%), Gaps = 64/380 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S + L C L +G Q ++K L + LI++ +CG++ DA F
Sbjct: 283 NSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLF 342
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ +K+ ++W +IS HG+ +AL LF++ + TF + L A GLV
Sbjct: 343 EVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVN 402
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
F SM Y +EP +HY+ MV+ LGRAG EE L+ I+ + P + ++ TLL
Sbjct: 403 IGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSM-PFRPHAAVFGTLLG 461
Query: 225 SSRVHGDMKLAKYALDKLLELDPGMYVG-------------------------------- 252
+ RVH +++LA++A +KLL+L+ G
Sbjct: 462 ACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKV 521
Query: 253 ---CWIEIQNKIYEFVSNEELTSEVSD-----------------------KLAEIEENMK 286
WIEI+NK++ F S++ + E+ L +EE K
Sbjct: 522 PGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQK 581
Query: 287 ELGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVV 346
E L+ ++ AVA G I P G +V K++ +CG H A +F+S I +RE++V
Sbjct: 582 EKLL-----LWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIV 636
Query: 347 KDPGSFHHFKDGKCSCKDAY 366
+D FHHFKDG CSC D +
Sbjct: 637 RDTTRFHHFKDGSCSCGDYW 656
>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 792
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 180/406 (44%), Gaps = 58/406 (14%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ + E L +Q + +I IL++C L++G +
Sbjct: 388 WNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVR 447
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
S V LI + ++CG I +A F +KN ++W +IS HG EAL+
Sbjct: 448 STDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALN 507
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
+F + + P TF L A + GLV E +F SM Y EPS +HY+ MV+ L
Sbjct: 508 IFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDIL 567
Query: 194 GRAGMFEEVLEFIKG--IVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
GRAG + L+FI+ I PG +W TLL + R+H D LA+ +KL ELDP G
Sbjct: 568 GRAGHLQRALQFIEAMSIEPGS---SVWETLLGACRIHKDTNLARTVSEKLFELDPDNVG 624
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEE---LTSE 273
+V IEI + F S ++ E
Sbjct: 625 YHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKE 684
Query: 274 VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
+ +KL ++E M+E G+ L ++ A+A GLI+ G R
Sbjct: 685 IYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIR 744
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+IK++ +C H+ + +S I ER +VV+D FHHFKDG CSC D
Sbjct: 745 IIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGD 790
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%)
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
Y K +SH +V L + S+ +I+ A F +PEK+ SW +IS +G
Sbjct: 342 HGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLT 401
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+A+ LF++ Q S NP T L A A +G
Sbjct: 402 EDAISLFREMQKSEFSPNPVTITCILSACAQLG 434
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 1/127 (0%)
Query: 12 IPWNLLLKACIKAKDY-EMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
I WN ++ K + Y E + + I C +D+ ++ DIL + L +G Q +
Sbjct: 186 ILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHS 245
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
TK G SH V I++ S+CGKI F+ + + +++ +I ++G
Sbjct: 246 LATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETEL 305
Query: 131 ALDLFKD 137
+L LFK+
Sbjct: 306 SLSLFKE 312
>gi|413921338|gb|AFW61270.1| hypothetical protein ZEAMMB73_216321 [Zea mays]
Length = 687
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/408 (26%), Positives = 186/408 (45%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L A + E EL +++ +D ++ +L LL QA A
Sbjct: 281 VAWNSMLAAYVLHGHSEEALELYQKMCSTHVAMDQFTFSTMLGVFSRLGLLEHAKQAHAG 340
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ +RGL L+++ + G+++DA F+ P +N +SW +I+ HG +A
Sbjct: 341 LIQRGLPLDIVGNTALVDLYCKWGRMEDARNVFERMPRRNLISWNALIAGYGYHGMGDKA 400
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+++F+ N TF + L A GLV E R+F M E I+P HY+ ++E
Sbjct: 401 IEMFERLIAEGAVPNHVTFLAVLNACRFSGLVDEGKRIFQLMTENLRIKPRAMHYACVIE 460
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
GR G+ +E I+ P +W LL +SR+H M LAK++ ++LL ++P
Sbjct: 461 LFGREGLLDESYSMIRR-APFTPTANMWGALLTASRIHKSMHLAKFSAEQLLAMEPEKIN 519
Query: 248 ----------------------------GMYVG---CWIEIQNKIYEFVSNEEL---TSE 273
G+Y+G WI ++ + F + L ++E
Sbjct: 520 SYVVLLNLYVSSGRQDSACKVVETLKRKGLYIGNACSWITVKKTDHRFFFKDTLHPQSAE 579
Query: 274 VSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPTR 318
+ +L + + ++E GFV + Y ++ A+A GLIS P R
Sbjct: 580 IYRRLDTLMKEVREAGFVAEENELLPDIHPDEQKISRAYHSERLAIAFGLISTAPQTPLR 639
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ +S +C H+ +F+S + +RE++V+D FHHFK G CSC D +
Sbjct: 640 ISQSHRLCSDCHNLIKFVSRVTKREIIVRDGSRFHHFKLGVCSCGDYW 687
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
N ++ + CG + +A AF P++N ++W ++ V+ G P AL LF++
Sbjct: 145 NHVLRMYLECGMLAEARQAFDGMPDRNGVTWGIMMGGLVDRGRPRAALALFRE 197
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 182/375 (48%), Gaps = 57/375 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ L++C L G ++ + + V LI++ S+CG +++A L F
Sbjct: 258 DEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVF 317
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGL 162
TP K+ ++W +I+ HG+ +AL LF + Q T + PT TF L+A A GL
Sbjct: 318 NDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQG-ITGLQPTDITFIGTLQACAHAGL 376
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V E R+F SM + Y I+P EHY +V LGRAG + E IK + ++W ++
Sbjct: 377 VNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNM-NMDADSVLWSSV 435
Query: 223 LLSSRVHGDMKLAKYALDKLLEL---DPGMY---------VGCW---------------- 254
L S ++HGD L K + L+ L + G+Y VG +
Sbjct: 436 LGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIV 495
Query: 255 -------IEIQNKIYEFVSNEELTS---EVSDKLAEIEENMKELGFVLN-----RSLYQT 299
IEI+NK++EF + + S E+ L +I E +K G+V N + L +T
Sbjct: 496 KEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEET 555
Query: 300 KMK----------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
+ + A+A GLIS G P ++ K++ +C H+ + +S I R++V++D
Sbjct: 556 EKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDR 615
Query: 350 GSFHHFKDGKCSCKD 364
FHHF DG CSC D
Sbjct: 616 NRFHHFTDGSCSCGD 630
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILL 62
L S I+ E ++ LLK+C K +++H + + L ID Y +++ +
Sbjct: 122 LSSEINPNEFTFSSLLKSC-STKSGKLIHTHVLKFGLG---IDPYVATGLVDVYAKGGDV 177
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
+ M +R L+S A+ C ++ G ++ A F S E++ +SW +I
Sbjct: 178 VSAQKVFDRMPERSLVSSTAMITCY----AKQGNVEAARALFDSMCERDIVSWNVMIDGY 233
Query: 123 VNHGHPSEALDLFK 136
HG P++AL LF+
Sbjct: 234 AQHGFPNDALMLFQ 247
>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Vitis vinifera]
Length = 681
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 177/375 (47%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ ++ +C N L GTQ A + K P V + L+++ +CG ++ A AF
Sbjct: 308 NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAF 367
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ ++W ++S HG +A+ +F+ R N TF S L + GLV
Sbjct: 368 DEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVE 427
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E F SM++ Y + P EEHYS +++ LGRAG +E EFI + P + W + L
Sbjct: 428 EGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRM-PFEPNAFGWCSFLG 486
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMYVG---------------------- 252
+ R+HGD ++ K A +KL++L+P +Y
Sbjct: 487 ACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKL 546
Query: 253 ---CWIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFV---------LNRSLY 297
W+++ K + F + + S + +KL + + +K G+V ++ S+
Sbjct: 547 PGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMK 606
Query: 298 Q------TKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ ++ AVA LIS P G P V K++ +C HSA +F+S + R+++V+D
Sbjct: 607 EKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSR 666
Query: 352 FHHFKDGKCSCKDAY 366
FHHF DG CSC D +
Sbjct: 667 FHHFTDGSCSCGDYW 681
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 131/323 (40%), Gaps = 32/323 (9%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
E+ W ++ K ++E +++ ID + +C L +C G +
Sbjct: 172 EVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHS 231
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE-KNSLSWTFIISARVNHGHPS 129
+ K G S VGN L ++ S+ G ++ A F E +N +S+T +I V
Sbjct: 232 SVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIE 291
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY--S 187
+ L +F + + + N TF S +KA A + + +L +V I E+ + S
Sbjct: 292 KGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLH---AQVMKINFDEDPFVSS 348
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE--L 245
I+V+ G+ G+ E+ ++ I G + W +L+ HG K A +++++ +
Sbjct: 349 ILVDMYGKCGLLEQAIQAFDEI--GDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGV 406
Query: 246 DPG------MYVGC-----------WIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKEL 288
P + GC + +K Y V EE S V D L +KE
Sbjct: 407 KPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGR-AGRLKEA 465
Query: 289 GFVLNRSLYQTKMKAVALGLISF 311
+NR ++ A G SF
Sbjct: 466 KEFINRMPFEPN----AFGWCSF 484
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+ ++ ++ + L G Q A + G + N L+N+ S+CG++D A F
Sbjct: 4 DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGL 162
+ P++N +SWT +IS + SEA+ F R PT F SA++A A +G
Sbjct: 64 DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCG--MRICGEVPTQFAFSSAIRACASLGS 121
Query: 163 V 163
+
Sbjct: 122 I 122
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 54/125 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + + +++C ++ + +C + + +G Q
Sbjct: 72 VSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCL 131
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G+ S VG+ L ++ S+CG + DA F+ P K+ +SWT +I G EA
Sbjct: 132 ALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEA 191
Query: 132 LDLFK 136
L FK
Sbjct: 192 LLAFK 196
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 110/411 (26%), Positives = 191/411 (46%), Gaps = 55/411 (13%)
Query: 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQA 68
DV I W +L A +A + L ++++ +I +L+ C L++G
Sbjct: 323 DVMI-WTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWV 381
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
+Y+ K + + L+++ ++CG I+ A F ++ W II+ HG+
Sbjct: 382 HSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYG 441
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
EALD+F + + + N TF L A + GLV E +LF M + + P EHY
Sbjct: 442 EEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGC 501
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP- 247
MV+ LGRAG+ +E E IK + P K ++W L+ + R+H + +L + A +LLE++P
Sbjct: 502 MVDLLGRAGLLDEAHEMIKSM-PIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPE 560
Query: 248 ---------GMYVGC--W-----------------------IEIQNKIYEFVSNEELTSE 273
+Y W IE+ ++EF+ ++ +
Sbjct: 561 NCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQ 620
Query: 274 ---VSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGM 315
+++ LAE+ + E G+V + S Y ++ A+A GLIS
Sbjct: 621 IRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPST 680
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P R++K++ +C H+A + +S I R ++V+D FHHF++G CSC D +
Sbjct: 681 PIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 731
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 6/165 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++++ + K+++M EL+ + ++ ++N + + +G AY
Sbjct: 191 VSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAY 250
Query: 72 MTKRGLISHPAV--GNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ + H V L+++ ++CG + A F +K +SWT +I+ +
Sbjct: 251 VIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLE 310
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174
EA LF Q R + + + L AYA + +A+ LF M
Sbjct: 311 EARALFDSTQNR----DVMIWTAMLSAYAQANCIDQAFNLFDQMR 351
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/124 (20%), Positives = 56/124 (45%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ + K + +++ +D++ +L +C +G + ++
Sbjct: 92 WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K+GL VGN L+ + C ++ A L F E++ +SW+ +I + + AL+
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211
Query: 134 LFKD 137
L ++
Sbjct: 212 LIRE 215
>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
Length = 616
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 177/375 (47%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ ++ +C N L GTQ A + K P V + L+++ +CG ++ A AF
Sbjct: 243 NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAF 302
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ ++W ++S HG +A+ +F+ R N TF S L + GLV
Sbjct: 303 DEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVE 362
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E F SM++ Y + P EEHYS +++ LGRAG +E EFI + P + W + L
Sbjct: 363 EGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRM-PFEPNAFGWCSFLG 421
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMYVG---------------------- 252
+ R+HGD ++ K A +KL++L+P +Y
Sbjct: 422 ACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKL 481
Query: 253 ---CWIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFV---------LNRSLY 297
W+++ K + F + + S + +KL + + +K G+V ++ S+
Sbjct: 482 PGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMK 541
Query: 298 Q------TKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ ++ AVA LIS P G P V K++ +C HSA +F+S + R+++V+D
Sbjct: 542 EKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSR 601
Query: 352 FHHFKDGKCSCKDAY 366
FHHF DG CSC D +
Sbjct: 602 FHHFTDGSCSCGDYW 616
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 131/323 (40%), Gaps = 32/323 (9%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
E+ W ++ K ++E +++ ID + +C L +C G +
Sbjct: 107 EVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHS 166
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE-KNSLSWTFIISARVNHGHPS 129
+ K G S VGN L ++ S+ G ++ A F E +N +S+T +I V
Sbjct: 167 SVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIE 226
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY--S 187
+ L +F + + + N TF S +KA A + + +L +V I E+ + S
Sbjct: 227 KGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLH---AQVMKINFDEDPFVSS 283
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE--L 245
I+V+ G+ G+ E+ ++ I G + W +L+ HG K A +++++ +
Sbjct: 284 ILVDMYGKCGLLEQAIQAFDEI--GDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGV 341
Query: 246 DPG------MYVGC-----------WIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKEL 288
P + GC + +K Y V EE S V D L +KE
Sbjct: 342 KPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGR-AGRLKEA 400
Query: 289 GFVLNRSLYQTKMKAVALGLISF 311
+NR ++ A G SF
Sbjct: 401 KEFINRMPFEPN----AFGWCSF 419
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 54/125 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + + +++C ++ + +C + + +G Q
Sbjct: 7 VSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCL 66
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G+ S VG+ L ++ S+CG + DA F+ P K+ +SWT +I G EA
Sbjct: 67 ALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEA 126
Query: 132 LDLFK 136
L FK
Sbjct: 127 LLAFK 131
>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
Length = 1822
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 179/377 (47%), Gaps = 57/377 (15%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+ ++ +L +C L+ G Y+ RG+ +G L+++ S+CG + A
Sbjct: 1449 VGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEV 1508
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F+S E+N +WT +S +G +E L LFK + N +F + L+ ++ GLV
Sbjct: 1509 FESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLV 1568
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E F SM++ Y ++P EHY MV+ GRAG ++ + FI + P + +W LL
Sbjct: 1569 DEGRACFDSMDK-YGVDPWPEHYGCMVDLYGRAGRLDDAISFINDM-PMEPHEGVWGALL 1626
Query: 224 LSSRVHGDMKLAKYALDKLLELDP--------------------------GMY------- 250
+SR+H + L KYALDKLL ++ GM
Sbjct: 1627 NASRIHNSVDLGKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKK 1686
Query: 251 VGCW--IEIQNKIYEFVSNEELT---SEVSDKLAEIEENMKELGFVLNR----------- 294
V W IE+ K++EF L +E+ LAE++ ++ G+ N
Sbjct: 1687 VPGWSTIEVDGKVHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEE 1746
Query: 295 -----SLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
SL+ K+ A+A GLI P + R++K++ +C H + +S + RE+V++D
Sbjct: 1747 KEGAISLHSEKL-ALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDR 1805
Query: 350 GSFHHFKDGKCSCKDAY 366
FHHFK G+CSC+D +
Sbjct: 1806 NRFHHFKGGECSCRDYW 1822
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 110/411 (26%), Positives = 191/411 (46%), Gaps = 55/411 (13%)
Query: 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQA 68
DV I W +L A +A + L ++++ +I +L+ C L++G
Sbjct: 363 DVMI-WTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWV 421
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
+Y+ K + + L+++ ++CG I+ A F ++ W II+ HG+
Sbjct: 422 HSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYG 481
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
EALD+F + + + N TF L A + GLV E +LF M + + P EHY
Sbjct: 482 EEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGC 541
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP- 247
MV+ LGRAG+ +E E IK + P K ++W L+ + R+H + +L + A +LLE++P
Sbjct: 542 MVDLLGRAGLLDEAHEMIKSM-PIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPE 600
Query: 248 ---------GMYVGC--W-----------------------IEIQNKIYEFVSNEELTSE 273
+Y W IE+ ++EF+ ++ +
Sbjct: 601 NCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQ 660
Query: 274 ---VSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGM 315
+++ LAE+ + E G+V + S Y ++ A+A GLIS
Sbjct: 661 IRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPST 720
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P R++K++ +C H+A + +S I R ++V+D FHHF++G CSC D +
Sbjct: 721 PIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 771
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 4/159 (2%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
L + W ++ CI++ E +L R+Q F + ++ ++ C L +
Sbjct: 257 GLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQL 316
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Q AY+ + G A+ L+++ +C I +A F ST ++ + WT ++SA
Sbjct: 317 GKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQ 376
Query: 125 HGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMG 161
+A +LF Q R + + PT T S L A+ G
Sbjct: 377 ANCIDQAFNLF--DQMRTSGVRPTKVTIVSLLSLCAVAG 413
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++++ + K+++M EL+ + ++ ++N + + +G AY
Sbjct: 161 VSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAY 220
Query: 72 MTKRGLISHPAV--GNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ + H V L+++ ++CG + A F +K +SWT +I+ +
Sbjct: 221 VIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLE 280
Query: 130 EALDLF 135
E LF
Sbjct: 281 EGTKLF 286
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L +C +G + ++ K+GL VGN L+ + C ++ A L F E++
Sbjct: 100 VLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERD 159
Query: 112 SLSWTFIISARVNHGHPSEALDLFKD 137
+SW+ +I + + AL+L ++
Sbjct: 160 VVSWSTMIRSLSRNKEFDMALELIRE 185
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 174/378 (46%), Gaps = 57/378 (15%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
ID +++ +++SC + LN+G Q + + GL VGN LI++ ++CG +D A L
Sbjct: 204 IDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILI 263
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F K+ +W +I HG SEA+ F+ NP TF L + GLV
Sbjct: 264 FDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSHQGLV 323
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E + F M + ++P +HY +V+ GRAG ++ LE + ++WR LL
Sbjct: 324 QEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKALEIVSNSSHND--SVLWRILL 381
Query: 224 LSSRVHGDMKLAKYALDKLLELD----------PGMYVG--------------------- 252
S ++H ++ + + A+++L EL +Y G
Sbjct: 382 GSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIYAGEKDKAGVARMRKMIKSQGKKT 441
Query: 253 ----CWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL--------- 296
WIEI ++++FV +++ + EV +KL E+ G+V + S+
Sbjct: 442 TPGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREVIHQASFFGYVGDESISSLDMLSTM 501
Query: 297 --------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
Y ++ A+A GL G R++K++ +C HS + +S RE++V+D
Sbjct: 502 ETLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLRVCRDCHSFIKAVSVAFNREIIVRD 561
Query: 349 PGSFHHFKDGKCSCKDAY 366
FHHFK G+CSC D +
Sbjct: 562 RVRFHHFKGGECSCNDYW 579
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 118/414 (28%), Positives = 190/414 (45%), Gaps = 62/414 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFID----SYSICDILNSCLNPILLNVGTQ 67
I W+ ++ ++ Y+ L +Q+ G D +++ +L +C L G
Sbjct: 131 ISWSCMINGYVRCGQYKEALALFREMQML-GVNDVRPNEFTMSGVLAACGRLGALEHGKW 189
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS-TPEKNSLSWTFIISARVNHG 126
A AY+ K G+ +G LI++ ++CG ++ A F + P K+ ++W+ +IS HG
Sbjct: 190 AHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHG 249
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
E + LF + N TF + A GLV E M E Y I P+ +HY
Sbjct: 250 LAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHY 309
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
MV+ GRAG +E +K + P + L+W LL SR+HGD++ + AL KL+EL+
Sbjct: 310 GCMVDLYGRAGRIKEAWNVVKSM-PMEPDVLVWGALLSGSRMHGDIETCELALKKLIELE 368
Query: 247 P---GMYV---------GCW-----------------------IEIQNKIYEFVSNEEL- 270
P G YV G W IE+ ++EF ++
Sbjct: 369 PTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSH 428
Query: 271 --TSEVSDKLAEIEENMKELGFVLNR----------------SLYQTKMKAVALGLISFP 312
T ++ L EI E +K G+V N SL+ K+ A+A G +
Sbjct: 429 PETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKL-ALAYGFLKTS 487
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G P R++K++ +C H A + +S + +RE++V+D FHHF G CSC+D +
Sbjct: 488 PGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 541
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
Query: 14 WNLLLKACIKAKDYEM--VHE---LLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQA 68
WN L++A ++A+ H + R++ D ++ +L S +P LL++G
Sbjct: 27 WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A + + GL P V LI++ S G +D A F PE+N +SW+ +I+ V G
Sbjct: 87 HAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQY 146
Query: 129 SEALDLFKDKQ 139
EAL LF++ Q
Sbjct: 147 KEALALFREMQ 157
>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Glycine max]
Length = 693
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 104/408 (25%), Positives = 187/408 (45%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ C + E L + + Y+ +LN+C + ++G + Y
Sbjct: 287 VSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGY 346
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M G + L+++ S+CG A F + + +SWT +I +G P EA
Sbjct: 347 MMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEA 406
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L F+ T + T+ L A GLV + F S++E + + + +HY+ +++
Sbjct: 407 LHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVID 466
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
L R+G F+E I + P K +W +LL R+HG+++LAK A L E++P
Sbjct: 467 LLARSGRFKEAENIIDNM-PVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPA 525
Query: 248 ------GMYVGC-------------------------WIEIQNKIYEFV---SNEELTSE 273
+Y WIEI+ +++ F+ ++ TS+
Sbjct: 526 TYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPKTSD 585
Query: 274 VSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPTR 318
+ + L E+ + +KE G+V + + +Y ++ AV G+IS P G P +
Sbjct: 586 IHEFLGELSKKIKEEGYVPDTNFVLHDVEEEQKEQNLVYHSEKLAVVFGIISTPPGTPIK 645
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V K++ C H+A +++S I++R++ V+D FH F+DG CSCKD +
Sbjct: 646 VFKNLRTCVDCHTAIKYISKIVQRKITVRDSNRFHCFEDGSCSCKDYW 693
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 14 WNLLLKACIKAKDYEM---VHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
++ L+ AC++ + E+ VH + G S + D+ C + + AQ
Sbjct: 90 YSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLV------DAQM 143
Query: 71 Y---MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
M R L S N +I ++ G+++ A F P++++ SW IS V H
Sbjct: 144 LFDEMGHRDLCS----WNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQ 199
Query: 128 PSEALDLFK 136
P EAL+LF+
Sbjct: 200 PREALELFR 208
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L +G + Y+ + L V + L+++ +CG +D+A F +++ +SWT +I
Sbjct: 236 LRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHR 295
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
G E LF+D N TF L A A
Sbjct: 296 CFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACA 332
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 116/421 (27%), Positives = 198/421 (47%), Gaps = 59/421 (14%)
Query: 2 KLCSLISDVE-IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
K+ S + D + + WN ++ A ++ ++ EL +Q D ++ + ++C
Sbjct: 428 KIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLG 487
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L++ Y+ K+ + +G L+++ +RCG A F +++ +WT I
Sbjct: 488 ALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIG 547
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
A G+ + A++LF + + + F + L A + GLV + + +F SM+++Y I
Sbjct: 548 AMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIA 607
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYA 238
P HY MV+ LGRAG+ E L I + ++ P +IW +LL + RVH ++ +A YA
Sbjct: 608 PQAVHYGCMVDLLGRAGLLSEALSLINSM---QMEPNDVIWGSLLAACRVHKNVDIAAYA 664
Query: 239 LDKLLELDP---GMYV---------GCW-----------------------IEIQNKIYE 263
+++ ELDP G++V G W IEI KI+E
Sbjct: 665 AERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFE 724
Query: 264 FVSNEELTSEVSD---KLAEIEENMKELGFV--LNRSLYQTKMK-------------AVA 305
F + +E E++ L EI ++++G+V L L K A+A
Sbjct: 725 FTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSEKLAIA 784
Query: 306 LGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDA 365
LIS GMP RV K++ +C HS + +S RE++V+D FH F+ G CSC D
Sbjct: 785 FALISTGQGMPIRVAKNLRICSDCHSFAKLVSKSYSREIIVRDNNRFHFFQQGFCSCGDY 844
Query: 366 Y 366
+
Sbjct: 845 W 845
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 36 RIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC 94
R +C G + D+++ +L++C L G Q + K G V N LI+ C
Sbjct: 128 RQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGEC 187
Query: 95 GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
G+ID F E+N +SWT +I G EA+ LF
Sbjct: 188 GEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLF 228
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 12/134 (8%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +++C ++ G Y+ + GL V N +IN+ +CGK + A F
Sbjct: 340 DRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVF 399
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP----TTFRSALKAYALM 160
K +SW +I+ V +G A W+ S P ++ + + A
Sbjct: 400 DRMLNKTRVSWNSLIAGFVRNGDMESA--------WKIFSAMPDSDLVSWNTMIGALVQE 451
Query: 161 GLVGEAYRLFLSME 174
+ EA LF M+
Sbjct: 452 SMFKEAIELFRVMQ 465
>gi|224118652|ref|XP_002331415.1| predicted protein [Populus trichocarpa]
gi|222873629|gb|EEF10760.1| predicted protein [Populus trichocarpa]
Length = 458
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 183/376 (48%), Gaps = 55/376 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ IL++C + L++G + + Y+ G S V LI++ S+CG I A F
Sbjct: 84 NGATLATILSACADLGSLDMGKEIEEYILSNGFQSDRQVQTSLIHMFSKCGSIGKAISVF 143
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF-KDKQWRYTSMNPTTFRSALKAYALMGLV 163
+ +K+ +W+ +I+ HG EAL LF K + + + F S L A + +GLV
Sbjct: 144 ERISDKDLAAWSSMINGYAIHGMAEEALGLFHKMLEIKEIKPDAVVFTSILLACSHVGLV 203
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ + F SM++ + I PS EHY +V+ LGRAG FE L+ I+ ++P KL +W L
Sbjct: 204 EDGLKFFKSMQKDFGIVPSVEHYMCLVDLLGRAGQFELALKTIR-VMPVKLQAQVWAPFL 262
Query: 224 LSSRVHGDMKLAKYALDKLLELDPGMY------------VGCW----------------- 254
+ H +++L + A KLL ++PG + +G W
Sbjct: 263 SACTKHCNLELGELAARKLLYMNPGSHANYVLMANLYTSMGKWKEAAVTRSLMIDRGLVK 322
Query: 255 ------IEIQNKIYEFVSNEELTSEVSD---KLAEIEENMKELGFV---------LNRSL 296
+EI ++ F++ + ++ D KL EI + E G+V L R
Sbjct: 323 APGWSQVEINGSVHVFIAGDRSHTQSIDIYKKLEEINLKLAEAGYVPETDTVIHDLEREE 382
Query: 297 YQTKMK------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
+ +K A+A GLIS G R++K+ C HSA +F+S I R L+V+D
Sbjct: 383 KEEALKVHSERLAIAFGLISTEAGSTLRIMKNHRTCVDCHSALKFISKITGRHLIVRDGS 442
Query: 351 SFHHFKDGKCSCKDAY 366
FHHF+ GKC+CKD +
Sbjct: 443 RFHHFESGKCTCKDFW 458
>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 102/378 (26%), Positives = 174/378 (46%), Gaps = 57/378 (15%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D +++ +++SC + LN+G Q + + GL VGN LI++ ++CG +D A L
Sbjct: 204 VDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILI 263
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F K+ +W +I HG SEA+ F+ NP TF L + GLV
Sbjct: 264 FDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSHQGLV 323
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E + F M + ++P +HY +V+ GRAG ++ LE + ++WR LL
Sbjct: 324 QEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKALEIVSNSSHND--SVLWRILL 381
Query: 224 LSSRVHGDMKLAKYALDKLLELD----------PGMYVG--------------------- 252
S ++H ++ + + A+++L EL +Y G
Sbjct: 382 GSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIYAGEKDKAGVARMRKMIKSQGKKT 441
Query: 253 ----CWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL--------- 296
WIEI ++++FV +++ + EV +KL E+ G+V + S+
Sbjct: 442 TPGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREVIHQASFFGYVGDESISSLDMLSTM 501
Query: 297 --------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
Y ++ A+A GL G R++K++ +C HS + +S RE++V+D
Sbjct: 502 ETLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLRVCRDCHSFIKAVSVAFNREIIVRD 561
Query: 349 PGSFHHFKDGKCSCKDAY 366
FHHFK G+CSC D +
Sbjct: 562 RVRFHHFKGGECSCNDYW 579
>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1092
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 110/351 (31%), Positives = 168/351 (47%), Gaps = 56/351 (15%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G + A + K L V CLI++ +CG+++DA F P S+ W II++
Sbjct: 442 LQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIAS 501
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
HG EAL LFKD + TF S L A + GLV E + F M++ Y I+P
Sbjct: 502 LGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKP 561
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
S +HY MV+ LGRAG E+ E ++ + P + IW LL + +++G+ +L A D+
Sbjct: 562 SLKHYGCMVDLLGRAGYLEKAYELVRNM-PIQPDASIWGALLSACKIYGNAELGTLASDR 620
Query: 242 LLELDPGMYVGCWIEIQN------------KIYEFVSNEELT------------------ 271
LLE+D VG ++ + N K+ + L
Sbjct: 621 LLEVD-SENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFY 679
Query: 272 ---------SEVSDKLAEIEENMKELGFVLNRS-LYQ--------------TKMKAVALG 307
+E+ +L + MK LG+V + S +YQ ++ A+A G
Sbjct: 680 TGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFG 739
Query: 308 LISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDG 358
+IS P P R+ K++ +CG H+A +++S I ERE+VV+D FHHFKDG
Sbjct: 740 IISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDG 790
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ + + +L R++ +D+ ++ IL C + G ++
Sbjct: 190 WNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVL 249
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K GL S V N LIN+ S+ G++ DA + F ++ +SW II+A + PS AL
Sbjct: 250 KHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALR 309
Query: 134 LFKDKQ 139
FK Q
Sbjct: 310 FFKGMQ 315
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 74/150 (49%), Gaps = 6/150 (4%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK-DKQWR 141
+GN L+N+ ++ G ++ A F P K+++SW +++ +G SEA+D + ++ R
Sbjct: 361 IGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECR 420
Query: 142 YTSMNPTTFRSALKAYALMGLVGEAYRLFLSM-EEVYHIEPSEEHYSIMVEALGRAGMFE 200
T N T+ S + AY+ +G + + ++ + + +++ + +++ G+ G E
Sbjct: 421 DTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVA--TCLIDLYGKCGRLE 478
Query: 201 EVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
+ + I P W ++ S +HG
Sbjct: 479 DAMSLFYEIPRDTSVP--WNAIIASLGIHG 506
>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
gi|238013832|gb|ACR37951.1| unknown [Zea mays]
gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
Length = 745
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 178/373 (47%), Gaps = 54/373 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ +++SC N L G Q GL+ + V N L+ + +CG I+DA F
Sbjct: 372 DDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLF 431
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ +SWT +++ G E +DLF+ + + TF L A + G V
Sbjct: 432 DEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVE 491
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ F SM++ + I P ++HY+ M++ R+G +E EFIK + P + W TLL
Sbjct: 492 KGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQM-PMHPDAIGWGTLLS 550
Query: 225 SSRVHGDMKLAKYALDKLLELD---PGMYV------------------------------ 251
+ R+ GDM++ ++A + LLE+D P YV
Sbjct: 551 ACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKE 610
Query: 252 -GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS----------- 295
GC WI+ +NK++ F ++++ + + +KL + M E G+ + S
Sbjct: 611 PGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDK 670
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ ++ A+A GL+ PH MP R++K++ +C H+A + +S I R+++V+D
Sbjct: 671 VHMVSHHSEKLAIAFGLMFVPHEMPIRIVKNLRVCVDCHNATKLISKITGRDILVRDAVR 730
Query: 352 FHHFKDGKCSCKD 364
FH F +G CSC D
Sbjct: 731 FHKFSNGVCSCGD 743
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 3/150 (2%)
Query: 2 KLCSLISDVE-IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
+L +++D + I W ++ + R++ ID Y+ IL +C
Sbjct: 227 RLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALS 286
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L G Q AY+ + + VG+ L+++ S+C I A+ AF+ KN +SWT +I
Sbjct: 287 ALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIV 346
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
+G EA+ +F + Q ++P F
Sbjct: 347 GYGQNGCSEEAVRVFSEMQ--RDGIDPDDF 374
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 41/72 (56%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I RC +++A F+ +++ ++WT +++ +G S+AL+ F+ +++ +
Sbjct: 210 NTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIA 269
Query: 145 MNPTTFRSALKA 156
++ TF S L A
Sbjct: 270 IDQYTFGSILTA 281
>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
Length = 886
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 182/373 (48%), Gaps = 56/373 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA--VGNCLININSRCGKIDDADL 102
++Y+I IL +C + L +G Q AY+T+ V NCLI++ S+CG +D A
Sbjct: 511 NAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARN 570
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F S P++N +SWT ++S HG EALD+F Q + +F L A + G+
Sbjct: 571 VFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGM 630
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V + F M Y + S EHY+ +++ L R G ++ + I+ + P + +IW L
Sbjct: 631 VDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEM-PMEPSAVIWVAL 689
Query: 223 LLSSRVHGDMKLAKYALDKLLEL---DPGMYV---------------------------- 251
L + RVH +++LA+YAL+KL+ + + G Y
Sbjct: 690 LSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIK 749
Query: 252 ---GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV--LNRSLY----- 297
GC W++ + F + L+ E+ L + +K +G+V N +L+
Sbjct: 750 KRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDE 809
Query: 298 --------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
++ A+A GL++ G P R+ K++ +CG HSA ++S I++ E++V+D
Sbjct: 810 EKNNLLSEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIIVRDS 869
Query: 350 GSFHHFKDGKCSC 362
FHHFK+G CSC
Sbjct: 870 SRFHHFKNGSCSC 882
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 7/173 (4%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCG------FIDSYSICDILNSCLNPI 60
I DV I WN ++ A +K + EL + + D SI +IL +C +
Sbjct: 215 IDDV-ISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLK 273
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L + +Y + G + V N LI+ ++CG ++DA F K+ +SW +++
Sbjct: 274 ALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVT 333
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSM 173
G+ A +LF++ + ++ T+ + + YA G EA F M
Sbjct: 334 GYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQM 386
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 3/127 (2%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WNLL++ IK + + R+ D +++ L +C G +
Sbjct: 117 WNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLIC 176
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK---NSLSWTFIISARVNHGHPSE 130
G S+ V N L+ + SRCG ++DA L F K + +SW I++A V +P
Sbjct: 177 CNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRT 236
Query: 131 ALDLFKD 137
AL+LF +
Sbjct: 237 ALELFSE 243
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA------------VGNCLININS 92
+S +I +L++C + L+ G + AY K+ L+S V N LI++ S
Sbjct: 394 NSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYS 453
Query: 93 RCGKIDDADLAFKSTP--EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
+C A F S P E+N ++WT +I +G ++AL +F + + ++ P +
Sbjct: 454 KCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAY 513
>gi|302824741|ref|XP_002994011.1| hypothetical protein SELMODRAFT_137997 [Selaginella moellendorffii]
gi|300138173|gb|EFJ04951.1| hypothetical protein SELMODRAFT_137997 [Selaginella moellendorffii]
Length = 434
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 176/376 (46%), Gaps = 55/376 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + +++C L G + GL++H + ++N+ ++CG +DDA + F
Sbjct: 60 DMVTFVAAIDACAGLSALVAGRSLHSIAAAAGLVAHVEISTAIVNMYAKCGNLDDATIVF 119
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
S KN +SW+ +I+A V +GH ALD F + TF+S L A + GL
Sbjct: 120 SSIRNKNLISWSTMITAFVQNGHTDRALDAFLAMNVDGLFPDAVTFKSILSACSHAGLFE 179
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ F + + I P+ +H+ MV+ LGR+G E E ++ +P + W TLL
Sbjct: 180 HGFFHFDLLVHDFGITPTMDHFKCMVDLLGRSGRLLEAEELVQ-TMPFVPDDVTWNTLLA 238
Query: 225 SSRVHGDMKLAKYALDKLLELD---PGMYV------------------------------ 251
+ RVH ++ K A + LLEL PG YV
Sbjct: 239 ACRVHKSVERGKRAAEVLLELTSEIPGYYVLLSNIHAAAGDHAEKAKVRDLMEARGVRKK 298
Query: 252 GCW--IEIQNKIYEFVSNEELT----SEVSDKLAEIEENMKELGFVLNRS---------- 295
W IEI ++ +EF + E+ ++ ++L + MKE G+V + +
Sbjct: 299 PGWSTIEINDRFHEFTAGEKFQHPKKQQILEELKRLSVLMKEDGYVPDTTEVLRLVNEDE 358
Query: 296 -----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
+ ++ A+A GLIS P G RV+K++ +C HSA +F+S I R+++V+D
Sbjct: 359 KESLLFFHSEKLAIACGLISTPPGTTLRVVKNLRVCSDCHSATKFISKITGRKIIVRDLN 418
Query: 351 SFHHFKDGKCSCKDAY 366
FHH ++G CSC D +
Sbjct: 419 RFHHTENGVCSCGDYW 434
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 12/163 (7%)
Query: 87 LININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN 146
+I +R G++ A F + P +NS SW +I+ +GH AL LF+ +
Sbjct: 1 MIAAYARHGRMIHAKTTFDAAPRRNSSSWNAMIAGYAQNGHCKAALHLFRAMNNEGQRCD 60
Query: 147 PTTFRSALKAYA-LMGLVG--EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVL 203
TF +A+ A A L LV + + + V H+E S + +V + G ++
Sbjct: 61 MVTFVAAIDACAGLSALVAGRSLHSIAAAAGLVAHVEIS----TAIVNMYAKCGNLDDAT 116
Query: 204 EFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
I L + W T++ + +G ALD L ++
Sbjct: 117 IVFSSIRNKNL--ISWSTMITAFVQNGH---TDRALDAFLAMN 154
>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Brachypodium distachyon]
Length = 1054
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 115/383 (30%), Positives = 183/383 (47%), Gaps = 64/383 (16%)
Query: 40 CCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDD 99
CC F SI +LN+C + L G + A+ + L S V + L+++ S+CG+ID
Sbjct: 680 CCTF----SI--VLNACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDY 733
Query: 100 ADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159
A F S +KN SW +IS HG +AL++F++ Q + TF S L A +
Sbjct: 734 ASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSH 793
Query: 160 MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIW 219
GLV F ME+ + I P EHYS +++ LGRAG ++ E+I + P K LIW
Sbjct: 794 AGLVDRGLDYFEMMED-HGILPHIEHYSCVIDLLGRAGKLLKIQEYINRM-PMKPNTLIW 851
Query: 220 RTLLLSSRVHGD---MKLAKYALDKLLELDPGMYVG------------------------ 252
RT+L++ R D + L K A LLEL+P V
Sbjct: 852 RTVLVACRQSKDGDRIDLGKEASRMLLELEPQNPVNYVLASNFYAATGRWEDTAKARAAM 911
Query: 253 -----------CWIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVLNRSL-- 296
W+ + + ++ F++ + T E+ +KL + + +K G+V
Sbjct: 912 GGAAMKKEAGQSWVTLGDGVHTFIAGDRSHPNTKEIYEKLNFLIQKIKNAGYVPMTEFAL 971
Query: 297 -------------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERE 343
Y ++ AVA L +P R++K++ +CG H+A R++S I+ R+
Sbjct: 972 YDLEEENKEELLSYHSEKLAVAFVLTRSSSDVPIRIMKNLRVCGDCHTAFRYISQIVCRQ 1031
Query: 344 LVVKDPGSFHHFKDGKCSCKDAY 366
++++D FHHF+DGKCSC D +
Sbjct: 1032 IILRDSIRFHHFEDGKCSCGDYW 1054
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 42/201 (20%)
Query: 53 LNSCLNPI-LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS-TPEK 110
L S L+P+ +L +G Q A + K G I AV N L++ ++ G +D + F S + +
Sbjct: 584 LLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRR 643
Query: 111 NSLSWTFIISARVNHGHPSEALD----LFKDKQW--------------------RYTSMN 146
+++SW +IS + +GH E +D + Q R M+
Sbjct: 644 DAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMH 703
Query: 147 PTTFRSALKA-----------YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGR 195
RS L++ Y+ G + A ++F SM + +E ++ M+ R
Sbjct: 704 AFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMS-----QKNEFSWNSMISGYAR 758
Query: 196 AGMFEEVLEFIKGIVPGKLCP 216
G+ E+ LE + + CP
Sbjct: 759 HGLGEKALEIFEEMQRNGACP 779
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ KRGL + N L+N+ ++ ++ A F E+N++SWT ++S V G EA
Sbjct: 82 LVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITDEA 141
Query: 132 LDLFKDKQW---RYTSMNPTTFRSALKA 156
+FK W ++ P TF S L+A
Sbjct: 142 FRVFKAMLWEGSEFSRPTPFTFGSVLRA 169
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
L+SC + LL G Q K GL +V N L+ + CG ++ F S E +
Sbjct: 483 LSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDI 542
Query: 113 LSWTFIISARV-NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+SW I+ V +H +E++++F + + N TF + L A
Sbjct: 543 VSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSA 587
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 5/155 (3%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
E WN ++ + E E+ E +Q D + +L++C + L++ G
Sbjct: 746 EFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFE 805
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK-NSLSWTFIISARVNHGHPS 129
M G++ H +C+I++ R GK+ P K N+L W ++ A
Sbjct: 806 MMEDHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVA-CRQSKDG 864
Query: 130 EALDLFKDKQWRYTSM---NPTTFRSALKAYALMG 161
+ +DL K+ + NP + A YA G
Sbjct: 865 DRIDLGKEASRMLLELEPQNPVNYVLASNFYAATG 899
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 65 GTQAQAYMTKRGLIS-HPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G + ++ + GLI A+ N L+N+ ++CG ID A F+ ++ +SW IIS
Sbjct: 393 GREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLD 452
Query: 124 NHG 126
+G
Sbjct: 453 QNG 455
>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
Length = 696
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 185/374 (49%), Gaps = 55/374 (14%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
+ + +L +C + L++G A + + S+ V + L+++ +CG I+DA+ F
Sbjct: 324 FMVSSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFE 383
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLF-KDKQWRYTSMNPTTFRSALKAYALMGLVGE 165
P++N ++W +I + G AL +F K + T+ N T + L A + GL E
Sbjct: 384 MPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGLTKE 443
Query: 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS 225
Y LF +M+ + IEP EHY+ +V+ L RAGM E + I+G+ P + +W LL
Sbjct: 444 GYELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGM-PMRPSISVWGALLGG 502
Query: 226 SRVHGDMKLAKYALDKLLELDP---GMYV------------------------------- 251
++HG +L + A +KL ELDP G +V
Sbjct: 503 CKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKDP 562
Query: 252 -GCWIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNR--SLY-------- 297
WI +N ++ F + + ++ E+ LA+++ M+ G++ + +LY
Sbjct: 563 GRSWITWKNVVHVFQAKDTTHDMNREIQALLAKLKGQMQAAGYMPDTQYALYDLEEEEKE 622
Query: 298 -----QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
++ A+A GLI P G+P R++K++ +C H A +F+S I RE++V+D F
Sbjct: 623 SEVFQHSEKLALAFGLICIPPGIPIRIMKNLRICVDCHRAFKFISGIAGREIIVRDNNMF 682
Query: 353 HHFKDGKCSCKDAY 366
HHFK+ +CSCKD +
Sbjct: 683 HHFKNYECSCKDYW 696
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 95/234 (40%), Gaps = 7/234 (2%)
Query: 12 IPWN-LLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ A + + E V E ++ G + S+C N+C L++G Q
Sbjct: 188 VAWNAVMTNAVLDGRPLETV-EAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYG 246
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
++ K G +V N +++ +C + A F +N++SW ++ A +G E
Sbjct: 247 FVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEE 306
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG-EAYRLFLSMEEVYHIEPSEEHYSIM 189
A ++ R PT F + GL+G + R ++ I+ + S +
Sbjct: 307 AFFVYLGA--RRAGEEPTDFMVSSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASAL 364
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
V+ G+ G E+ + + L + W ++ GD A DK++
Sbjct: 365 VDMYGKCGGIEDAEQVFFEMPQRNL--VTWNAMIGGYAHIGDAHNALSVFDKMI 416
>gi|302764608|ref|XP_002965725.1| hypothetical protein SELMODRAFT_84657 [Selaginella moellendorffii]
gi|300166539|gb|EFJ33145.1| hypothetical protein SELMODRAFT_84657 [Selaginella moellendorffii]
Length = 502
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 181/380 (47%), Gaps = 62/380 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLI--SHPAVGNCLININSRCGKIDDADL 102
++ + + N+C L G + A G + S P + N L+N+ R G +++A
Sbjct: 123 NAMTFTGVFNACGVVEDLEQGREIHALAMASGELKSSSPILENALLNMFVRFGSLEEARK 182
Query: 103 AFKST--PE--KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
F + P+ NS+SWT +I+A HG EAL+LFK+ + TTF L+A +
Sbjct: 183 VFDAMDHPDAFSNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACS 242
Query: 159 LMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLI 218
GL+ E+ F SM E Y I P+E HY ++ +GRAG ++ E I + P +
Sbjct: 243 HAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSM-PFHPETVT 301
Query: 219 WRTLLLSSRVHGDMKLAKYALDKLLELDP----------GMYVGC--------------- 253
W+TLL + R+H + A + L +L P +Y
Sbjct: 302 WKTLLNACRIHSQAERATKVAELLAKLAPEDSMAYTLLGNVYAATERYGDQMRVRKSMTD 361
Query: 254 ----------WIEIQNKIYEFVSNEELTSEVSDKLAEIEE---NMKELGFVLNR------ 294
+IE++NK++EFV+ + + L E+E+ M+E G+V N
Sbjct: 362 RGLKKVPRKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHA 421
Query: 295 ----------SLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIEREL 344
L+ K+ A+A GLI+ P G P ++K++ +C H+A + ++ I+ R +
Sbjct: 422 VNEEEKEQLIGLHSEKL-AIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRI 480
Query: 345 VVKDPGSFHHFKDGKCSCKD 364
VV+D FHH +DG+CSCKD
Sbjct: 481 VVRDTHRFHHLEDGQCSCKD 500
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 81/205 (39%), Gaps = 40/205 (19%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F ++I L+SC + G + + + G S+ V N L+N ++C KI +A
Sbjct: 16 FPSDFTISVALSSCSSLKSFERGARIHRWADEHGYGSNLLVQNALVNFYAKCSKIPEAMK 75
Query: 103 AFKSTPEKNS---LSWTFIISARVNHGHPSEALDLF-KDKQWRYTSMNPTTFRSALKA-- 156
F E+ S +SW+ +I A HG EAL LF + ++ N TF A
Sbjct: 76 LFGEMSERTSRTVVSWSAMIGAYALHGRGQEALLLFHRMRKDGRVEPNAMTFTGVFNACG 135
Query: 157 -----------YALMGLVGE--------------AYRLFLSMEEVYHIEPSEEH------ 185
+AL GE + F S+EE + + +H
Sbjct: 136 VVEDLEQGREIHALAMASGELKSSSPILENALLNMFVRFGSLEEARKVFDAMDHPDAFSN 195
Query: 186 ---YSIMVEALGRAGMFEEVLEFIK 207
++ M+ AL + G +E LE K
Sbjct: 196 SVSWTAMIAALAQHGQGDEALELFK 220
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 106/408 (25%), Positives = 191/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + D L R+ L D + +L +C L G +Y
Sbjct: 330 VSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSY 389
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K+G ++ VG L+++ S+CG + + F P+K+ +SW+ +++ HG EA
Sbjct: 390 LVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREA 449
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ + + + F S L A + GLV E +F ME+ Y+++P+ HYS MV+
Sbjct: 450 ISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVD 509
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM-- 249
LGRAG +E I+ + K IW LL +SR+H ++KLA+ + K+ +++P +
Sbjct: 510 LLGRAGHLDEAYVIIR-TMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVS 568
Query: 250 -YV-------------------------------GC-WIEIQNKIYEFVSNE---ELTSE 273
Y+ GC +IE+ N ++ F+ + + T +
Sbjct: 569 SYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQTED 628
Query: 274 VSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGMPTR 318
+ KL E+++ +KE G+ + SL ++ A+A LI+ G R
Sbjct: 629 IYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSERLAIAFALINTGPGTVIR 688
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +CG H+ + +S + RE++++D FHHF G CSC D +
Sbjct: 689 ITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCSCGDYW 736
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 13/144 (9%)
Query: 4 CSLISDVEIP-----------WNLLLKACIKAKDYEMVHELLERIQLCCG-FIDSYSICD 51
C L+S E+ WN +++ + M +L R LC G D+++
Sbjct: 108 CGLMSQAEVIFDGIVLKNSFLWNFMIRG-YASNGLPMKSLVLYREMLCFGQRADNFTYPF 166
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L +C + +L+ +G + + + GL S VGN L+ + ++ G + A + F E++
Sbjct: 167 VLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERD 226
Query: 112 SLSWTFIISARVNHGHPSEALDLF 135
SW +IS + A +F
Sbjct: 227 LTSWNTMISGYAKNADSGTAFLVF 250
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 1/144 (0%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ K D + + + F D ++ +L++C + + G Y
Sbjct: 230 WNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAV 289
Query: 74 KRGLISHPAV-GNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
+ + ++ N LI + C + DA F+ K+++SW +I +G E+L
Sbjct: 290 RNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESL 349
Query: 133 DLFKDKQWRYTSMNPTTFRSALKA 156
LF+ + + TF + L A
Sbjct: 350 RLFRRMALDGSGPDQVTFIAVLGA 373
Score = 37.7 bits (86), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNC-LININSRCGKIDDADLAFKSTPEK 110
+L S N G Q A+M ++ + N L + CG + A++ F K
Sbjct: 65 LLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLK 124
Query: 111 NSLSWTFIISARVNHGHPSEALDLFKD 137
NS W F+I ++G P ++L L+++
Sbjct: 125 NSFLWNFMIRGYASNGLPMKSLVLYRE 151
>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g09950
gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 995
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 119/417 (28%), Positives = 200/417 (47%), Gaps = 72/417 (17%)
Query: 12 IPWNLLLKACIK----AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQ 67
+ WN ++ I AK ++V +L+ Q +DS+ +L++ + L G +
Sbjct: 585 VTWNSMISGYIHNELLAKALDLVWFMLQTGQR----LDSFMYATVLSAFASVATLERGME 640
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
A + L S VG+ L+++ S+CG++D A F + P +NS SW +IS HG
Sbjct: 641 VHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQ 700
Query: 128 PSEALDLFK----DKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
EAL LF+ D Q T + TF L A + GL+ E ++ F SM + Y + P
Sbjct: 701 GEEALKLFETMKLDGQ---TPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRI 757
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS-SRVHG-DMKLAKYALDK 241
EH+S M + LGRAG +++ +FI+ + P K LIWRT+L + R +G +L K A +
Sbjct: 758 EHFSCMADVLGRAGELDKLEDFIEKM-PMKPNVLIWRTVLGACCRANGRKAELGKKAAEM 816
Query: 242 LLELDP----------GMYVG-------------------------CWIEIQNKIYEFVS 266
L +L+P MY W+ +++ ++ FV+
Sbjct: 817 LFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVA 876
Query: 267 NEELTSE---VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGL 308
++ + + KL E+ M++ G+V Y ++ AVA L
Sbjct: 877 GDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVL 936
Query: 309 IS-FPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+ +P R++K++ +CG HSA +++S I R+++++D FHHF+DG CSC D
Sbjct: 937 AAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSD 993
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Query: 43 FIDSYSICDILNSC--LNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC-GKIDD 99
F + Y+ +L +C + + + G Q M K V N LI++ +C G +
Sbjct: 99 FSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGY 158
Query: 100 ADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRS 152
A AF KNS+SW IIS G A +F Q+ + TF S
Sbjct: 159 ALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGS 211
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 62 LNVGTQAQAYMTKRGLISH-PAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L G + ++ GL+ +GN L+N+ ++CG I DA F +K+S+SW +I+
Sbjct: 329 LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMIT 388
Query: 121 ARVNHGHPSEALDLFK 136
+G EA++ +K
Sbjct: 389 GLDQNGCFIEAVERYK 404
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK 105
S+++ L+SC + +G Q K G+ + +V N L+ + + G +++ F
Sbjct: 415 SFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFS 474
Query: 106 STPEKNSLSWTFIIS--ARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
S PE + +SW II AR P EA+ F + Q +N TF
Sbjct: 475 SMPEHDQVSWNSIIGALARSERSLP-EAVVCFLNAQRAGQKLNRITF 520
Score = 37.7 bits (86), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 33/80 (41%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N LIN G A F P +N +SW I+S +G EAL +D
Sbjct: 40 NNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIF 99
Query: 145 MNPTTFRSALKAYALMGLVG 164
N F S L+A +G VG
Sbjct: 100 SNQYAFVSVLRACQEIGSVG 119
>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Glycine max]
Length = 986
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 184/373 (49%), Gaps = 55/373 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLIS-HPAVGNCLININSRCGKIDDADLA 103
+ +++ L +C L G Q AY+ + S V NCLI++ S+ G +D A +
Sbjct: 612 NDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIV 671
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F + P++N++SWT +++ HG +AL +F + + + TF L A + G+V
Sbjct: 672 FDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMV 731
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
F M + + ++P EHY+ MV+ GRAG E ++ I + P + P++W LL
Sbjct: 732 DHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEM-PMEPTPVVWVALL 790
Query: 224 LSSRVHGDMKLAKYALDKLLELDPG----------MYV---------------------- 251
+ R+H +++L ++A ++LLEL+ G +Y
Sbjct: 791 SACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKK 850
Query: 252 --GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS---------- 295
GC WI+ + + F + + ++ + LA++ + +K +G+V S
Sbjct: 851 RPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDDEE 910
Query: 296 ----LYQTKMK-AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
L++ K A+A G+++ P R+ K++ +CG HSA ++S IIE E++++D
Sbjct: 911 KGDLLFEHSEKLALAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIEHEIILRDSS 970
Query: 351 SFHHFKDGKCSCK 363
FHHFK+G CSCK
Sbjct: 971 RFHHFKNGSCSCK 983
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Query: 12 IPWNLLLKACIKAKDYE----MVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQ 67
+ WN ++ A + A D + H++ R + D S+ +IL +C + G Q
Sbjct: 329 VSWNSVVSAYMWASDANTALALFHKMTTRHLMS---PDVISLVNILPACASLAASLRGRQ 385
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
+ + GL+ VGN ++++ ++CGK+++A+ F+ K+ +SW +++ G
Sbjct: 386 VHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGR 445
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSM 173
AL LF+ ++ T+ + + YA G EA +F M
Sbjct: 446 LEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQM 491
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 4/137 (2%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN L++ + V L +++ D Y+ + +C N L++G A ++
Sbjct: 227 WNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVS 286
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK---NSLSWTFIISARVNHGHPSE 130
+ G S+ V N ++++ +CG + A F + + +SW ++SA + +
Sbjct: 287 RSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANT 346
Query: 131 ALDLFKDKQWRYTSMNP 147
AL LF R+ M+P
Sbjct: 347 ALALFHKMTTRHL-MSP 362
>gi|357464871|ref|XP_003602717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491765|gb|AES72968.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 554
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 112/412 (27%), Positives = 196/412 (47%), Gaps = 58/412 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQL----CCGFIDSYSICDILNSCLNPILLNVGTQ 67
+ W+ L+ +K + +++Q+ ++D + ++++ + ++ +G
Sbjct: 144 VSWSTLISCLVKNNLPAEALSVFQQMQMGHRDIRNWLDRAIMLSVISAVSSLGVIELGIW 203
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
+++ + G++ +G LIN+ SRCG ID + F PE+N ++WT +I+ HG
Sbjct: 204 VHSFIVRMGIVMTVPLGTALINMYSRCGLIDRSVKVFDEMPERNVVTWTALINGLAVHGR 263
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
EAL +F + + + F L A + GLV + +R+F SM + + I+P EHY
Sbjct: 264 SREALKVFYEMKESGLKPDGALFIGVLVACSHGGLVEDGWRVFESMRDEFGIKPMLEHYG 323
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
MV+ LGRAG+ E +F++ + P K +IWRTLL + H + LA+ A ++++ELDP
Sbjct: 324 CMVDLLGRAGLILEAFDFVEEM-PLKPNSVIWRTLLGACVNHNHLGLAEKARERIIELDP 382
Query: 248 ---GMY---------VGCW-----------------------IEIQNKIYEFVSNEELT- 271
G Y VG W + I ++EFVS + +
Sbjct: 383 YHDGDYVLLSNAYGRVGNWGGKAGLRNSMKQNRIVKEPGLSFVHIDQVVHEFVSGDHVHP 442
Query: 272 --SEVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHG 314
E++ LA I + +K G+ N S Y ++ AVA L+
Sbjct: 443 QWEEITKFLASIIDTVKLGGYTPNTSSVLHDIQDEEKEHCLGYHSEKLAVAFVLLYHRDR 502
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RVIK++ +C H + S I +R+++++D FHHF G CSC+D +
Sbjct: 503 RTIRVIKNLRICYDCHDFMKHASGIFDRDIIIRDRNRFHHFSKGLCSCQDFW 554
Score = 37.7 bits (86), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G ++ V N LIN G +D A F ++ +SW+ +IS V + P+EAL
Sbjct: 105 KLGFDTNIFVQNALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAEALS 164
Query: 134 LFKDKQ 139
+F+ Q
Sbjct: 165 VFQQMQ 170
>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 637
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 182/408 (44%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ +++K+YE L R Q + +++ ++ +C N L G Q A
Sbjct: 231 VTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAV 290
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G S+ V + +++ ++CG + ++ + F EKN W IIS H P E
Sbjct: 291 IRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEV 350
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF+ Q N TF S L GLV E R F M Y + P+ HYS MV+
Sbjct: 351 MILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVD 410
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG+ E E IK I P + IW +LL S RV +++LA+ A KL EL+P G
Sbjct: 411 ILGRAGLLSEAYELIKSI-PFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAG 469
Query: 249 MYV--------------------------------GCWIEIQNKIYEFV---SNEELTSE 273
+V WI+I++K++ F S+ E
Sbjct: 470 NHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIRE 529
Query: 274 VSDKLAEIEENMKELGF--VLNRSLYQTKMK-------------AVALGLISFPHGMPTR 318
+ L + +++ G+ + L+ ++ A+ GL+ P G R
Sbjct: 530 ICTMLDNLVIELRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPEGSTVR 589
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +C H + S R ++V+D FHHF DG CSC + +
Sbjct: 590 IMKNLRICVDCHEFMKAASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 40/157 (25%)
Query: 82 AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF---KDK 138
+ N LIN S+CG ++ A F E++ +SW +I + SEALD+F +++
Sbjct: 99 TLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNE 158
Query: 139 QWRYTSMNPTTFRSA--------------------------------LKAYALMGLVGEA 166
++++ ++ SA L YA G++ +A
Sbjct: 159 GFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDA 218
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVL 203
++F SM+ + S +S MV ++ +EE L
Sbjct: 219 VQVFESMQ-----DKSSVTWSSMVAGYVQSKNYEEAL 250
>gi|357443809|ref|XP_003592182.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481230|gb|AES62433.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 912
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 102/362 (28%), Positives = 174/362 (48%), Gaps = 40/362 (11%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D +S+ L++ + G Q Y K G +V N L+++ S+CG I DA+ A
Sbjct: 519 MDEFSLASFLSAAAGLGTMETGKQLHCYSVKSGFQRCHSVSNSLVHLYSKCGSIHDANRA 578
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
FK E ++ SW +IS +G S AL F D + + T S + A + GL+
Sbjct: 579 FKDISEPDAFSWNGLISGFSWNGLISHALSTFDDMRLAGVKPDSITLLSLISACSHGGLL 638
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
F SM++ YHI P +HY +V+ LGR G EE + I+ + K LI +TLL
Sbjct: 639 ELGLEYFHSMQKEYHITPKLDHYMCLVDLLGRGGRLEEAMGVIEKM-SFKPDSLICKTLL 697
Query: 224 LSSRVHGDMKLAKYALDKLLEL---DPGMYV----------------------------- 251
+ +HG++ L + + LEL DP +Y+
Sbjct: 698 NACNLHGNVALGEDMARRCLELDPSDPAIYLLLANLYDNAGLSDFGEKTRRLMRERGLRR 757
Query: 252 ---GCWIEIQNKIYEFVSNEELT-SEVSDKLAEIEENMKELGFVLNRS---LYQTKMKAV 304
CW+EI+++++ F + E++ E+++KL + + + + Y + AV
Sbjct: 758 SPGQCWMEIRSRVHHFSAGEKINEDEITEKLEFLITEFRNRRYQYQENEDKFYHPEQLAV 817
Query: 305 ALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
A G+++ P P R+ K+ +C + H+ + +I RE++++D FH FKDG+CSC+D
Sbjct: 818 AFGVLNAPSTSPIRIYKNSLICSHCHTFIMLSTQVIGREIIMRDRKRFHFFKDGQCSCRD 877
Query: 365 AY 366
+
Sbjct: 878 IF 879
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 71/157 (45%), Gaps = 2/157 (1%)
Query: 2 KLCSLISDVE--IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP 59
KL SL+ D + W +L + ++ + E+ ++ + + ++ +L + +
Sbjct: 172 KLLSLVKDGGDVVSWTTMLSSLVENGKWGEAFEIYVKMIESGVYPNEFTFVKLLGAVSSF 231
Query: 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
+ L+ G A++ G + + ++++ S+C ++ DA TPE + WT +I
Sbjct: 232 LGLSYGKLLHAHLIMFGAELNLVLKTAVVDMYSKCRRMVDAIKVSNLTPEYDVYLWTTLI 291
Query: 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
S + EA+ +F+D + N T+ S L A
Sbjct: 292 SGFTQNLQVREAISVFRDMELSGLLPNNFTYSSLLNA 328
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W +L + K K + +L + + + + +++ L SC G Q
Sbjct: 81 VSWTTILSSHTKTKHHSDALQLFDMMIGSGEYPNEFTLSSALRSCFALGEFERGMQIHCS 140
Query: 72 MTKRGLISHPAVGNCLININSRCG--KIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
K GL + VG L+ ++CG ++ L + +SWT ++S+ V +G
Sbjct: 141 AVKLGLEMNRFVGTSLVEFYTKCGCCSVEAWKLLSLVKDGGDVVSWTTMLSSLVENGKWG 200
Query: 130 EALDLF 135
EA +++
Sbjct: 201 EAFEIY 206
>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 823
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 111/370 (30%), Positives = 171/370 (46%), Gaps = 58/370 (15%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L +C L G + + K GL V L ++ +CG+++DA F P N
Sbjct: 457 VLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVN 516
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
S+ W +I+ HGH +A+ LFK+ + TF + L A + GLV E F
Sbjct: 517 SVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFE 576
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVH 229
M+ Y I PS +HY MV+ GRAG E L+FIK + L P IW LL + RVH
Sbjct: 577 MMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSM---SLQPDASIWGALLSACRVH 633
Query: 230 GDMKLAKYALDKLLELDP----------GMY--VGCW----------------------- 254
G++ L K A + L E++P MY G W
Sbjct: 634 GNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSS 693
Query: 255 IEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS---------------L 296
+E+ NK+ F + + + E+ +L ++ +K +G+V + +
Sbjct: 694 MEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILM 753
Query: 297 YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFK 356
++ A+A LI+ P R+ K++ +CG HS +F+S I ERE++V+D FHHFK
Sbjct: 754 SHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFK 813
Query: 357 DGKCSCKDAY 366
+G CSC D +
Sbjct: 814 NGVCSCGDYW 823
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 100/251 (39%), Gaps = 37/251 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLN-----PILLNVGT 66
I WN ++KA YE+ + L I L + I CL IL +G
Sbjct: 314 ISWNSIIKA------YELNEQPLRAISL----FQEMRLSRIQPDCLTLISLASILSQLGD 363
Query: 67 -----QAQAYMTKRG-LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
Q + ++G + +GN ++ + ++ G +D A F P + +SW IIS
Sbjct: 364 IRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIIS 423
Query: 121 ARVNHGHPSEALDLFKD-KQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSM------ 173
+G SEA++++ ++ + N T+ S L A + G + + +L +
Sbjct: 424 GYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLY 483
Query: 174 EEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMK 233
+V+ + + Y G+ G E+ L I P W TL+ HG +
Sbjct: 484 LDVFVVTSLADMY-------GKCGRLEDALSLFYQIPRVNSVP--WNTLIACHGFHGHGE 534
Query: 234 LAKYALDKLLE 244
A ++L+
Sbjct: 535 KAVMLFKEMLD 545
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+DS ++ +L++C N G +Y K GL S V N LI++ + G++ D
Sbjct: 245 MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKV 304
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP 147
F ++ +SW II A + P A+ LF++ R + + P
Sbjct: 305 FDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEM--RLSRIQP 346
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 4/122 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSY-SICDILNSCLNPILLNVGTQAQAYM 72
WNL++ +A + V L G Y + +L +C I G +
Sbjct: 120 WNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVI---DGNKIHCLA 176
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K G + V LI++ SR + +A + F P ++ SW +IS G+ EAL
Sbjct: 177 LKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL 236
Query: 133 DL 134
L
Sbjct: 237 TL 238
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 195/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ +C+ ++D + ++ R++ D ++ IL C G +
Sbjct: 483 ITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGC 542
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL S VGN LI + S+CG + ++ FK K+ ++WT +ISA +G +A
Sbjct: 543 IFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKA 602
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F + + + F + + A + GLV E F M++ Y IEP EHY+ +V+
Sbjct: 603 VRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVD 662
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
L R+ + ++ +FI + P K IW LL + R+ GD ++A+ ++++EL+P G
Sbjct: 663 LLSRSALLDKAEDFILSM-PLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTG 721
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNE---ELTSE 273
YV GC W+EIQNK+Y F + E E
Sbjct: 722 YYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEE 781
Query: 274 VSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGMPTR 318
V+ L + M + G++ N ++ A+A GL++ G P +
Sbjct: 782 VNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQ 841
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ +C H+ +++S I++REL+V+D FH FKDG CSC D +
Sbjct: 842 VMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 889
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 8/157 (5%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN +++A + L Q D+Y+ ++N+C + + +
Sbjct: 83 WNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVL 142
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
G S +GN LI++ R +D A F+ P ++ +SW +IS +G+ +EAL+
Sbjct: 143 DMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALE 202
Query: 134 LFKDKQWRYTSM----NPTTFRSALKAYALMGLVGEA 166
++ +R+ ++ + T S L+A +G V E
Sbjct: 203 IY----YRFRNLGVVPDSYTMSSVLRACGGLGSVEEG 235
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSY-----SICDILNSCLNPILLNVGT 66
+ WN ++ + YE E I+L ++ + +I IL +C + L G
Sbjct: 283 VSWNTMICGYSQVGLYE------ESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGK 336
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
YM G N LIN+ ++CG + + F K+S+SW +I+ + +G
Sbjct: 337 YVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNG 396
Query: 127 HPSEALDLFK 136
EA+ LFK
Sbjct: 397 SFDEAMKLFK 406
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ I+ ++ +L + ++ DS + +L+ L++G +
Sbjct: 383 VSWNSMINVYIQNGSFDEAMKLFKMMKTDVK-PDSVTYVMLLSMSTQLGDLHLGKELHCD 441
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
+ K G S+ V N L+++ ++CG++ D+ F++ ++ ++W II++ V+
Sbjct: 442 LAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVH 494
>gi|302143669|emb|CBI22530.3| unnamed protein product [Vitis vinifera]
Length = 539
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 171/361 (47%), Gaps = 64/361 (17%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
I +++ +L+ + + G Q + K G S+ + N LI++ SRCG I+ A
Sbjct: 205 ISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQV 264
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F ++N +SWT +I+ HG + AL++F T N T+ + L A + +G++
Sbjct: 265 FNEMEDRNVISWTSMITGFAKHGFATRALEMFHQMLETGTKPNEITYVAVLSACSHVGMI 324
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E + F SM + + I P EHY+ MV+ LGR+G+ E +EFI + P L+WRTLL
Sbjct: 325 SEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM-PLMADALVWRTLL 383
Query: 224 LSSRVHGDMKLAKYALDKLLEL---DPGMYV----------------------------- 251
+ VHG+ +L ++A + +LE DP Y+
Sbjct: 384 GACHVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIK 443
Query: 252 --GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVA 305
GC WIE++N+++ F E ++ +L ++ +KE+G++ +
Sbjct: 444 EAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDF--------- 494
Query: 306 LGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDA 365
++ +CG H+A +++S RE+VV+D FHH K+G CSC D
Sbjct: 495 ----------------NLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDY 538
Query: 366 Y 366
+
Sbjct: 539 W 539
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 195/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ +C+ ++D + ++ R++ D ++ IL C G +
Sbjct: 320 ITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGC 379
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL S VGN LI + S+CG + ++ FK K+ ++WT +ISA +G +A
Sbjct: 380 IFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKA 439
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F + + + F + + A + GLV E F M++ Y IEP EHY+ +V+
Sbjct: 440 VRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVD 499
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
L R+ + ++ +FI + P K IW LL + R+ GD ++A+ ++++EL+P G
Sbjct: 500 LLSRSALLDKAEDFILSM-PLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTG 558
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNE---ELTSE 273
YV GC W+EIQNK+Y F + E E
Sbjct: 559 YYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEE 618
Query: 274 VSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGMPTR 318
V+ L + M + G++ N ++ A+A GL++ G P +
Sbjct: 619 VNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQ 678
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ +C H+ +++S I++REL+V+D FH FKDG CSC D +
Sbjct: 679 VMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 55/122 (45%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN +++A + L Q D+Y+ ++N+C + + +
Sbjct: 83 WNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVL 142
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
G S +GN LI++ R +D A F+ P ++ +SW +IS +G+ +EAL+
Sbjct: 143 DMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALE 202
Query: 134 LF 135
++
Sbjct: 203 IY 204
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +I IL +C + L G YM G N LIN+ ++CG + + F
Sbjct: 221 DLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVF 280
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWR 141
K+S+SW +I+ + +G ++L +F++ + R
Sbjct: 281 SGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKAR 317
>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 119/409 (29%), Positives = 192/409 (46%), Gaps = 56/409 (13%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ W ++ +C + KD E + EL +Q+ +S +I +L +C N L G A
Sbjct: 310 VSWTSMIASCSQNGKDMEAL-ELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHC 368
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ + G+ + VG+ LI++ ++CG++ + L F P +N +SW +++ HG E
Sbjct: 369 FSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFE 428
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+++F+ Q + +F L A GL E + F SM + +E EHYS MV
Sbjct: 429 AINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMV 488
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DP 247
LGR+G EE IK + P + +W LL S RVH + L + A ++ EL +P
Sbjct: 489 TLLGRSGRLEEAYAMIKQM-PFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNP 547
Query: 248 GMYV--------------------------------GCWIEIQNKIYEFV---SNEELTS 272
G Y+ WIEI+NK++ + S+
Sbjct: 548 GNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMP 607
Query: 273 EVSDKLAEIEENMKELG------FVLNRSLYQTKMK---------AVALGLISFPHGMPT 317
++ +KLA++ MK+ G FVL Q K + AV LGL++ G P
Sbjct: 608 QIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTKPGFPL 667
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+VIK++ +C H+ +F+S +RE+ V+D FH FK G CSC D +
Sbjct: 668 QVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 80/183 (43%), Gaps = 3/183 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ ++ Y + + + L D S+ +L + + + +G Q Y
Sbjct: 176 VSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCY 235
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K+GL V + LI++ +C + F E + + +++ +G A
Sbjct: 236 VIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNA 295
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L++F KQ++ +N ++ S + + + G EA LF M ++ ++P+ ++
Sbjct: 296 LEVF--KQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREM-QIEGVKPNSVTIPCLLP 352
Query: 192 ALG 194
A G
Sbjct: 353 ACG 355
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 118/414 (28%), Positives = 190/414 (45%), Gaps = 62/414 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFID----SYSICDILNSCLNPILLNVGTQ 67
I W+ ++ ++ Y+ L +Q+ G D +++ +L +C L G
Sbjct: 162 ISWSCMINGYVRCGQYKEALALFREMQML-GVNDVRPNEFTMSGVLAACGRLGALEHGKW 220
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST-PEKNSLSWTFIISARVNHG 126
A AY+ K G+ +G LI++ ++CG ++ A F + P K+ ++W+ +IS HG
Sbjct: 221 AHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHG 280
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
E + LF + N TF + A GLV E M E Y I P+ +HY
Sbjct: 281 LAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHY 340
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
MV+ GRAG +E +K + P + L+W LL SR+HGD++ + AL KL+EL+
Sbjct: 341 GCMVDLYGRAGRIKEAWNVVKSM-PMEPDVLVWGALLSGSRMHGDIETCELALKKLIELE 399
Query: 247 P---GMYV---------GCW-----------------------IEIQNKIYEFVSNEEL- 270
P G YV G W IE+ ++EF ++
Sbjct: 400 PTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSH 459
Query: 271 --TSEVSDKLAEIEENMKELGFVLNR----------------SLYQTKMKAVALGLISFP 312
T ++ L EI E +K G+V N SL+ K+ A+A G +
Sbjct: 460 PETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKL-ALAYGFLKTS 518
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G P R++K++ +C H A + +S + +RE++V+D FHHF G CSC+D +
Sbjct: 519 PGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 572
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 11/195 (5%)
Query: 14 WNLLLKACIKAKDYEM--VHE---LLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQA 68
WN L++A ++A+ H + R++ D ++ +L S +P LL++G
Sbjct: 27 WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A + + GL P V LI++ S CG + A F P+ + SW II+A G
Sbjct: 87 HAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLV 146
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME--EVYHIEPSEEHY 186
A +LF R N ++ + Y G EA LF M+ V + P+E
Sbjct: 147 DMARNLFAVMPER----NVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTM 202
Query: 187 SIMVEALGRAGMFEE 201
S ++ A GR G E
Sbjct: 203 SGVLAACGRLGALEH 217
>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 620
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 113/402 (28%), Positives = 188/402 (46%), Gaps = 48/402 (11%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + V EL E+++ D +++ +L+SC + +G +
Sbjct: 220 ITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGEL 279
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G + + N LI++ +RCG + A F P K+ +SWT +I HG
Sbjct: 280 VEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETG 339
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF D R + F L A + GL + LF +M+ Y +EP EHYS +V+
Sbjct: 340 LTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVD 399
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG +E +EFI + P + +W LL + ++H ++ +A+ A K++E +P G
Sbjct: 400 LLGRAGRLDEAMEFIDSM-PVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMNIG 458
Query: 249 MYV-------------GCW-------------------IEIQNKIYEFVSNE---ELTSE 273
YV G W +E + K++ F++ + E T E
Sbjct: 459 YYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSHEQTEE 518
Query: 274 VSDKLAEIEENMKELGF---------VLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVG 324
V L E+E ++ EL V + + ++ A+A G+++ G VIK++
Sbjct: 519 VHRMLDELETSVMELAGNMDCDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLR 578
Query: 325 MCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+C H + +S I++R VV+D FH+FKDG CSCKD +
Sbjct: 579 VCEDCHVFIKLVSKIVDRRFVVRDASRFHYFKDGVCSCKDYW 620
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+DS +I ++ C P L +G K G S AV N I + +CG ++
Sbjct: 151 VDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRL 210
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
F P K ++W +IS +G + L+LF+ + +P T S L + A +G
Sbjct: 211 FDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLG 268
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D++S IL SC + L G Q ++ + G + P V LI++ +CG ++DA F
Sbjct: 49 DAFSFPFILKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVF 108
Query: 105 KSTPEKNSLS--WTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTT 149
+ P + L + +IS + S+A +F+ + S++ T
Sbjct: 109 EENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVT 155
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 115/409 (28%), Positives = 193/409 (47%), Gaps = 56/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A ++ +E EL +Q D ++ I ++C L++ Y
Sbjct: 430 VSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTY 489
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + +G L+++ SRCG A FK +++ +WT I G+ A
Sbjct: 490 IEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGA 549
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
++LF + + + F + L A + G V + +LF SME+ + I P HY MV+
Sbjct: 550 IELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVD 609
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG+ EE ++ I+ + P + ++W +LL + R H +++LA YA +KL +L P G
Sbjct: 610 LLGRAGLLEEAVDLIQSM-PIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVG 668
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNEELTSE--- 273
++V G W IE+Q I+EF S +E +E
Sbjct: 669 IHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTH 728
Query: 274 VSDKLAEIEENMKELGFVLNR----------------SLYQTKMKAVALGLISFPHGMPT 317
+ L EI + E G+V + S + K+ A+A GLI+ G+P
Sbjct: 729 IGLMLEEINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKL-AMAYGLITTGQGIPI 787
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV+K++ MC HS + +S + RE+ V+D +H FK+G CSC+D +
Sbjct: 788 RVVKNLRMCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y+ +L++C + L+ G Q + K GL V N LI+ + CGK+D F
Sbjct: 129 DKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLF 188
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
E+N +SWT +I+ EA+ LF NP T + A A
Sbjct: 189 DGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACA 242
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ + +C L+VG + AY+ + GL + N +I++ +CGK + A F
Sbjct: 331 DKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVF 390
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ P K ++W +I+ V G A +F + R + ++ + + A + +
Sbjct: 391 EHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLER----DLVSWNTMIGALVQVSMFE 446
Query: 165 EAYRLFLSME 174
EA LF M+
Sbjct: 447 EAIELFREMQ 456
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 90/197 (45%), Gaps = 7/197 (3%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
++++C L +G + +Y+++ G+ + N L+++ +CG I A F KN
Sbjct: 237 VISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKN 296
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG--LVGEAYRL 169
+ + I+S V+H S+ L + + + + T S + A A +G VG++
Sbjct: 297 LVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHA 356
Query: 170 FLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVH 229
++ +E + + +++ + G E + + + P K + W +L+
Sbjct: 357 YVLRN---GLEGWDNISNAIIDMYMKCGKREAACKVFEHM-PNKTV-VTWNSLIAGLVRD 411
Query: 230 GDMKLAKYALDKLLELD 246
GDM+LA D++LE D
Sbjct: 412 GDMELAWRIFDEMLERD 428
>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
Length = 637
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 180/375 (48%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L +C + L AY+ + G + + L+N+ ++ G+++ ++ F
Sbjct: 264 DQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIF 323
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ +++ ++WT +++ H EA+ LF ++ TF L A + GLV
Sbjct: 324 EEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVE 383
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F M EVY +EP +HYS MV+ LGR+G E+ E IK + P + +W LL
Sbjct: 384 EGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM-PMEPSSGVWGALLG 442
Query: 225 SSRVHGDMKLAKYALDKLLELDPGMY------------VGCW------------------ 254
+ RV+G+++L K ++LL LDP + G W
Sbjct: 443 ACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRN 502
Query: 255 -----IEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELG------FVLNRSLYQTK 300
IE NKI+ FV ++L + E+ KL E+ ++E G FVL+ + K
Sbjct: 503 PGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVK 562
Query: 301 MK---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ A+A GL+ G+P + K++ +CG HS +F S + +R ++++D
Sbjct: 563 VDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKR 622
Query: 352 FHHFKDGKCSCKDAY 366
FHHF DG CSC+D +
Sbjct: 623 FHHFADGLCSCRDYW 637
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 57/119 (47%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ ++++C + L+ G + K G+ V N LIN+ + G +D A F+
Sbjct: 166 TLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEM 225
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
P ++ +SW ++ ++G+ + +DLF + + + T + L+A GL +A
Sbjct: 226 PVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQA 284
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 109/408 (26%), Positives = 186/408 (45%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A +++ L +R++L +D + +L++C L G Y
Sbjct: 163 VSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGY 222
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G+ + +I++ +CG ++ A F P+K SW +I HG A
Sbjct: 223 IEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAA 282
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
++LFK+ + + + TF + L A A GLV E F M EV ++P EH+ MV+
Sbjct: 283 IELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVD 342
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG+ EE + I + P + L+ + R+HG+ +L + K++EL+P G
Sbjct: 343 LLGRAGLLEEARKLINEM-PVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSG 401
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNEEL---TSE 273
YV G W IE ++ + EF++ E
Sbjct: 402 RYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKE 461
Query: 274 VSDKLAEIEENMKELGFVL---------------NRSLYQTKMKAVALGLISFPHGMPTR 318
+ KL EI E ++ +G+V N Y ++ A+A GL+ G R
Sbjct: 462 IYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLR 521
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +C H A + +S + +RE++++D FHHF+ G CSCKD +
Sbjct: 522 ISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 569
>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
Length = 787
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 121/404 (29%), Positives = 183/404 (45%), Gaps = 53/404 (13%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ + EM L + +Q + +I L++C + L++G ++
Sbjct: 382 WNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIIS 441
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K L + V LI++ ++CG I +A F KN +SW +IS HG +EAL
Sbjct: 442 KEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALK 501
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
L+KD +TF S + A + GLV E ++F M Y I P EH + MV+ L
Sbjct: 502 LYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLL 561
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD---PGMY 250
GRAG E LE I + P +W LL + VH + LAK A KL ELD G Y
Sbjct: 562 GRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYY 621
Query: 251 V-------------------------------GC-WIEIQNKIYEFVSNEEL---TSEVS 275
V GC IEI ++ + F++ + L + +
Sbjct: 622 VLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIY 681
Query: 276 DKLAEIEENMKELGF--VLNRSLYQTKMK-------------AVALGLISFPHGMPTRVI 320
L + M E G+ V +LY + + A+A GL+S G R+I
Sbjct: 682 SYLERLTAKMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRII 741
Query: 321 KSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
K++ +C H+A +F+S + +R +VV+D FHHF+DG CSC D
Sbjct: 742 KNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGD 785
Score = 38.1 bits (87), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%)
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A++ K L + V L + R ++ A F + EK SW +IS +G
Sbjct: 336 HAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLT 395
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
A+ LF+ Q NP T S L A A +G
Sbjct: 396 EMAVALFQLMQELNVQPNPITISSTLSACAHLG 428
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
[Vitis vinifera]
Length = 1058
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 106/411 (25%), Positives = 194/411 (47%), Gaps = 61/411 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ A ++A E+ +L + + ++ +L++C N + +G Q A
Sbjct: 653 VSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHAL 712
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + VGN LI + +CG +D F+ PE + ++W ++ +G EA
Sbjct: 713 IFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEA 771
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ +F+ + + +F L A + GLV E + F SM + Y I P HY+ MV+
Sbjct: 772 IKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVD 831
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL------ 245
LGRAG E I+ + P K +IW LL + R+H +++L + ++L ++
Sbjct: 832 LLGRAGYLSEAEALIENM-PVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSA 890
Query: 246 --------------------------------DPGMYVGCWIEIQNKIYEFVSNEELTSE 273
+PG+ WI+++NK++ FV+ + +
Sbjct: 891 TYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGI---SWIQVKNKLHCFVTGDRTHDQ 947
Query: 274 VSDKLAEIEE---------NMKELGFVL---------NRSLYQTKMKAVALGLISFPHGM 315
+ + + ++E M + FVL N LY ++ AV G++S P+G
Sbjct: 948 IEEIYSALKEYYGCFRATGYMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNGS 1007
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P ++IK++ +CG H+ +FMS + R+++++D FHHF+DG CSC D +
Sbjct: 1008 PIQIIKNLRICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 33/191 (17%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W ++ ++ ++ ELL + S L++C N + +G +
Sbjct: 523 WAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAI 582
Query: 74 KRGLISHPAVGNCLININSRCGKI-------------------------------DDADL 102
K G + V N LI++ ++CG + DDA +
Sbjct: 583 KTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARV 642
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F+ P+++ +SWT IISA V GH ALDLF D R N T S L A +G
Sbjct: 643 VFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGA 702
Query: 163 V--GEAYRLFL 171
+ GE + +
Sbjct: 703 IKLGEQFHALI 713
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 91/203 (44%), Gaps = 30/203 (14%)
Query: 7 ISDVEIPWNLLLKAC--IKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
ISD W++ +K C + D + +L I G D +++ S L PI +
Sbjct: 339 ISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAI---TGLDD----LELIGS-LRPIAIKT 390
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G + VG+ ++N +R G +D A F++ PE+N SWT +I+A
Sbjct: 391 GYEGDV-----------VVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQ 439
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
G +A+ L++ R T + + AYA +G + +A +F +E+ + P+
Sbjct: 440 CGRLDDAIQLYE----RVPEQTVATKTAMMTAYAQVGRIQKARLIF---DEI--LNPNVV 490
Query: 185 HYSIMVEALGRAGMFEEVLEFIK 207
++ ++ + GM +E + +
Sbjct: 491 AWNAIIAGYTQNGMLKEAKDLFQ 513
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M +R ++S N +IN S+ GK+D+A L F + KN +WT +++ G EA
Sbjct: 197 MIQRDVVSW----NSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEA 252
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175
++F+ T N ++ + + Y G + A +LF M E
Sbjct: 253 REVFES----MTERNVVSWNAMISGYVQNGDLKNARKLFDEMPE 292
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N I R G++++A F +++ +SW +I+ +G EA LF +
Sbjct: 175 NTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFD----AFVG 230
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175
N T+ L YA G + EA +F SM E
Sbjct: 231 KNIRTWTILLTGYAKEGRIEEAREVFESMTE 261
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I ++ G + +A F+ P KNS SW +I+ V + EAL+L + +
Sbjct: 493 NAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSV 552
Query: 145 MNPTTFRSALKAYALMGLV 163
+ ++F SAL A A +G V
Sbjct: 553 PSDSSFTSALSACANIGDV 571
>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Vitis vinifera]
Length = 629
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 114/406 (28%), Positives = 189/406 (46%), Gaps = 53/406 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + V +L +++ D ++ +L+SC + G + +
Sbjct: 226 ITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQR 285
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G +P + N LIN+ +RCG + A F EKN +SWT II+ HG A
Sbjct: 286 IELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELA 345
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF + + F S L A + GL + F +ME Y ++P EHYS +V+
Sbjct: 346 VQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVD 405
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG EE + I G + + +W LL + ++H +++LA+ A +K++E +P G
Sbjct: 406 LLGRAGRLEEARKLI-GSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIG 464
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEEL---TSE 273
YV GC ++E Q +I+ F++ + E
Sbjct: 465 YYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQE 524
Query: 274 VSDKLAEIEENMKELG-------------FVLNRSLYQTKMKAVALGLISFPHGMPTRVI 320
+ L +E+ +K G + ++ K+ A+A GLI+ G VI
Sbjct: 525 IYHMLDGLEDIIKRRGGSNDNDQESRNEELITGMGVHSEKL-AIAFGLINTEPGTEITVI 583
Query: 321 KSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
K++ +CG H + +S I++R+LVV+D FHHFK+G CSCKD +
Sbjct: 584 KNLRVCGDCHLFLKLVSEIVDRQLVVRDATRFHHFKNGVCSCKDYW 629
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 5/204 (2%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+++ ++ ++ C PI L GT A + GL +VGNCL+ + RCG +D A
Sbjct: 157 VNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKL 216
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F PEK ++W +IS +G LDL++ ++ +P T L + A +G
Sbjct: 217 FDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAH 276
Query: 164 GEAYRLFLSME-EVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
+ +E + P + + ++ R G + G+ + + W +
Sbjct: 277 AAGREVEQRIELSGFGFNPFLK--NALINMYARCGNLVKARAIFDGMTEKNV--ISWTAI 332
Query: 223 LLSSRVHGDMKLAKYALDKLLELD 246
+ +HG +LA D+++ D
Sbjct: 333 IAGYGMHGQGELAVQLFDEMISSD 356
>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
Length = 681
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 170/375 (45%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ ++ +C N L GTQ A + K P V + L+++ +CG ++ A AF
Sbjct: 308 NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAF 367
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ ++W ++S HG +A+ F+ R N TF S L + GLV
Sbjct: 368 DEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVE 427
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E F SM++ Y + P EEHYS +++ LGRAG +E EFI + P + W + L
Sbjct: 428 EGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRM-PFEPNAFGWCSFLG 486
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMYVG---------------------- 252
+ R+HGD ++ K A +KL++L+P +Y
Sbjct: 487 ACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKL 546
Query: 253 ---CWIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMK---- 302
W+++ K + F + + S + +KL + + +K G+V M
Sbjct: 547 PGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQIKAAGYVPXTDSVPLDMDDXMK 606
Query: 303 -----------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
AVA LIS P G P V K++ +C HSA +F+S + R+++V+D
Sbjct: 607 EKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSR 666
Query: 352 FHHFKDGKCSCKDAY 366
FHHF DG CSC D +
Sbjct: 667 FHHFTDGSCSCGDYW 681
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 130/323 (40%), Gaps = 32/323 (9%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
E+ W ++ K ++E +++ ID + +C L +C G +
Sbjct: 172 EVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHS 231
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE-KNSLSWTFIISARVNHGHPS 129
+ K G S VGN L ++ S+ G ++ A F E +N +S+T +I V
Sbjct: 232 SVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIE 291
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY--S 187
+ L +F + + + N TF S +KA A + + +L +V I E+ + S
Sbjct: 292 KGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLH---AQVMKINFDEDPFVSS 348
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE--L 245
I+V+ G+ G+ E ++ I G + W +L+ HG K A +++++ +
Sbjct: 349 ILVDMYGKCGLLEHAIQAFDEI--GDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGV 406
Query: 246 DPG------MYVGC-----------WIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKEL 288
P + GC + +K Y V EE S V D L +KE
Sbjct: 407 KPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGR-AGRLKEA 465
Query: 289 GFVLNRSLYQTKMKAVALGLISF 311
+NR ++ A G SF
Sbjct: 466 KEFINRMPFEPN----AFGWCSF 484
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+ ++ ++ + L G Q A + G + N L+N+ S+CG++D A F
Sbjct: 4 DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGL 162
+ P++N +SWT +IS + SEA+ F R PT F SA++A A +G
Sbjct: 64 DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCG--MRICGEVPTQFAFSSAIRACASLGS 121
Query: 163 V 163
+
Sbjct: 122 I 122
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 54/125 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + + +++C ++ + +C + + +G Q
Sbjct: 72 VSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCL 131
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G+ S VG+ L ++ S+CG + DA F+ P K+ +SWT +I G EA
Sbjct: 132 ALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEA 191
Query: 132 LDLFK 136
L FK
Sbjct: 192 LLAFK 196
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 109/408 (26%), Positives = 189/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + D+E + R+ + ++ L +C L VG + Y
Sbjct: 271 VSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNY 330
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
++ G + +G L+++ ++CG I A F T K+ L+W+ +I HG +A
Sbjct: 331 LSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQA 390
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L F + + + F + L A + G V + F SM Y IEP+ +HY+++V+
Sbjct: 391 LQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVD 450
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD---PG 248
LGRAG +E L FI+ + P +IW L + R H ++++A+ +KLL+L+ PG
Sbjct: 451 LLGRAGRLDEALSFIQSM-PINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPG 509
Query: 249 MY---------VGCW-----------------------IEIQNKIYEFVSNEEL---TSE 273
Y VG W IE++ +++ FV+ + E
Sbjct: 510 SYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEE 569
Query: 274 VSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGMPTR 318
+S KL EI + K+ G++ + ++ A+A GLIS G R
Sbjct: 570 ISLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIR 629
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +CG HS ++ S + RE++++D FHHFKDG CSC D +
Sbjct: 630 IVKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY-- 142
N LIN R G +D A F PEKN +SWT +I+ +G +AL +F WR
Sbjct: 243 NSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMF----WRMLE 298
Query: 143 --TSMNPTTFRSALKAYALMGL--VGEAYRLFLS 172
N T SAL A +G VGE +LS
Sbjct: 299 EGVRPNDLTVVSALLACTKIGALQVGERIHNYLS 332
>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
Length = 948
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 195/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ +C+ ++D + ++ R++ D ++ IL C G +
Sbjct: 542 ITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGC 601
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL S VGN LI + S+CG + ++ FK K+ ++WT +ISA +G +A
Sbjct: 602 IFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKA 661
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F + + + F + + A + GLV E F M++ Y IEP EHY+ +V+
Sbjct: 662 VRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVD 721
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
L R+ + ++ +FI + P K IW LL + R+ GD ++A+ ++++EL+P G
Sbjct: 722 LLSRSALLDKAEDFILSM-PLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTG 780
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEELT---SE 273
YV GC W+EIQNK+Y F + + + E
Sbjct: 781 YYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEE 840
Query: 274 VSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGMPTR 318
V+ L + M + G++ N ++ A+A GL++ G P +
Sbjct: 841 VNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQ 900
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ +C H+ +++S I +REL+V+D FH FKDG CSC D +
Sbjct: 901 VMKNLRVCEDCHTVTKYISKIXQRELLVRDANRFHVFKDGACSCGDYW 948
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 8/157 (5%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN +++A + L Q D+Y+ ++N+C + + +
Sbjct: 142 WNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVL 201
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
G S +GN LI++ R +D A F+ P ++ +SW +IS +G+ +EAL+
Sbjct: 202 XMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALE 261
Query: 134 LFKDKQWRYTSM----NPTTFRSALKAYALMGLVGEA 166
++ +R+ ++ + T S L+A +G V E
Sbjct: 262 IY----YRFRNLGVVPDSYTMSSVLRACGGLGSVEEG 294
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSY-----SICDILNSCLNPILLNVGT 66
+ WN ++ + YE E I+L ++ + +I IL +C + L G
Sbjct: 342 VSWNTMICGYSQVGLYE------ESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGK 395
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
YM G N LIN+ ++CG + + F K+S+SW +I+ + +G
Sbjct: 396 YVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNG 455
Query: 127 HPSEALDLFK 136
EA+ LFK
Sbjct: 456 SFDEAMKLFK 465
Score = 37.7 bits (86), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ I+ ++ +L + ++ DS + +L+ L +G +
Sbjct: 442 VSWNSMINVYIQNGSFDEAMKLFKMMKTDVK-PDSVTYVMLLSMSTQLGDLXLGKELHCD 500
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
+ K G S+ V N L+++ ++CG++ D+ F++ ++ ++W II++ V+
Sbjct: 501 LAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVH 553
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 109/408 (26%), Positives = 186/408 (45%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A +++ L +R++L +D + +L++C L G Y
Sbjct: 218 VSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGY 277
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G+ + +I++ +CG ++ A F P+K SW +I HG A
Sbjct: 278 IEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAA 337
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
++LFK+ + + + TF + L A A GLV E F M EV ++P EH+ MV+
Sbjct: 338 IELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVD 397
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG+ EE + I + P + L+ + R+HG+ +L + K++EL+P G
Sbjct: 398 LLGRAGLLEEARKLINEM-PVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSG 456
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNEEL---TSE 273
YV G W IE ++ + EF++ E
Sbjct: 457 RYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKE 516
Query: 274 VSDKLAEIEENMKELGFVL---------------NRSLYQTKMKAVALGLISFPHGMPTR 318
+ KL EI E ++ +G+V N Y ++ A+A GL+ G R
Sbjct: 517 IYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLR 576
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +C H A + +S + +RE++++D FHHF+ G CSCKD +
Sbjct: 577 ISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 624
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +S+ ++++ +N L + M +R ++S + LI S+ G +D A F
Sbjct: 154 DGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTS----LITGYSQWGFVDKAREVF 209
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+ PE+NS+SW +I+A V EA LF + ++ S L A +G
Sbjct: 210 ELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLG 266
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 4/129 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ ++ +C + G Q A++ K G + N LI++ ++ A F
Sbjct: 119 NKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVF 178
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ P+++ +SWT +I+ G +A ++F+ R N ++ + + AY +
Sbjct: 179 DNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPER----NSVSWNAMIAAYVQSNRLH 234
Query: 165 EAYRLFLSM 173
EA+ LF M
Sbjct: 235 EAFALFDRM 243
>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
chloroplastic-like [Glycine max]
Length = 765
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/412 (26%), Positives = 187/412 (45%), Gaps = 61/412 (14%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ W+ L+ ++ ++ E+ + I+ ++S+ +I +C L G Q A
Sbjct: 359 DFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAVSDLICGAQIHA 418
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K+GL+++ + + +I++ S+CG++D A AF + + ++++WT II A HG E
Sbjct: 419 DAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIICAHAYHGKAFE 478
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL LFK+ Q N TF L A + GLV E ++ SM + Y + P+ +HY+ M+
Sbjct: 479 ALRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKILDSMSDEYGVNPTIDHYNCMI 538
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ RAG+ +E LE I+ + P + + W++LL H ++++ A D + LDP
Sbjct: 539 DVYSRAGLLQEALEVIRSL-PFEPDVMSWKSLLGGCWSHRNLEIGMIAADNIFRLDPLDS 597
Query: 248 -------GMY------------------------VGC-WIEIQNKIYEFVSNEELTSEVS 275
+Y V C WI ++ K++ FV + +
Sbjct: 598 ATYVIMFNLYALAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVHRFVVGDRHHPQTE 657
Query: 276 DKLAEIEENMKELGFVLNRS---------------------LYQTKMKAVALGLISFPHG 314
+I +KEL F +S L ++ A+A GLI
Sbjct: 658 ----QIYSKLKELNFSFKKSKERLLNEENALCDFTERKEQLLDHSERLAIAYGLICTAAD 713
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P V K+ C H + +S + RELVV+D FHH G+CSC+D +
Sbjct: 714 TPIMVFKNTRSCKDCHDFAKRVSIVTGRELVVRDGNRFHHINSGECSCRDYW 765
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D + IL +C L G Q +Y K GL S +VG L++ +C + + A A
Sbjct: 291 LDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQA 350
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
F+S E N SW+ +I+ G AL++FK + + +N + + +A
Sbjct: 351 FESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQA 403
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 79/188 (42%), Gaps = 30/188 (15%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
++ S +P +L++G Q + + + G ++ ++ + N+ +CG +D A++A KN
Sbjct: 198 LIMSFTDPSMLDLGKQIHSQLIRIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKN 257
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG--LVGE---A 166
+++ T ++ +AL LF ++ F LKA A +G G+ +
Sbjct: 258 AVACTGLMVGYTKAARNRDALLLFGKMISEGVELDGFVFSIILKACAALGDLYTGKQIHS 317
Query: 167 YRLFLSMEEVYHI-------------------------EPSEEHYSIMVEALGRAGMFEE 201
Y + L +E + EP++ +S ++ ++G F+
Sbjct: 318 YCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDR 377
Query: 202 VLEFIKGI 209
LE K I
Sbjct: 378 ALEVFKAI 385
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 175/375 (46%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y++ +L SC L +G A + + + +G LI++ ++CG++D A F
Sbjct: 309 DCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVF 368
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ +K+ + W IS GH +AL LF + + TF L A GLV
Sbjct: 369 RGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVE 428
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E R F SME V+ + P EHY MV+ LGRAG +E + IK + P + ++W LL
Sbjct: 429 EGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSM-PMEANAIVWGALLG 487
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
R+H D +L + L KL+ L+P G YV
Sbjct: 488 GCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKI 547
Query: 252 --GCWIEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGFV--LNRSLYQTKMK-- 302
WIE+ +++F+ ++ L+ ++ KL E+ +++K G+V + L+ + +
Sbjct: 548 PGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDIEEEEK 607
Query: 303 -----------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
AVA GLIS V+K++ +CG H A + +S I RE++V+D
Sbjct: 608 EHFIGCHSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDNNR 667
Query: 352 FHHFKDGKCSCKDAY 366
FH F DG CSCKD +
Sbjct: 668 FHCFTDGLCSCKDYW 682
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS+S+ ++L++C L G Y+T+ G++ + V L++ +CG ++ A F
Sbjct: 208 DSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVF 267
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
EKN +SW+ +I ++G P EALDLF
Sbjct: 268 DGMLEKNIVSWSSMIQGYASNGLPKEALDLF 298
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS++ +L +C + +G + + + K G + V LIN+ ++CG ID+A F
Sbjct: 107 DSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVF 166
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
P+KN SWT IS V G EA+D+F+
Sbjct: 167 DDIPDKNFASWTATISGYVGVGKCREAIDMFR 198
>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
Length = 1091
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 175/357 (49%), Gaps = 58/357 (16%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G + AY +RG + N L+++ +CG + A + F +KN +SWT +I+
Sbjct: 735 LERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAG 794
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNP--TTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179
HG A+ LF +Q R + + P +F + L A GL E R F +M++ Y I
Sbjct: 795 YGMHGFGKHAIALF--EQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKI 852
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239
EP +HY+ +V+ L R G +E LEFI+ + P + IW +LL R+H ++KLA+
Sbjct: 853 EPKLKHYTCIVDLLSRTGDLKEALEFIESM-PIEPDSSIWVSLLHGCRIHKNVKLAEKVA 911
Query: 240 DKLLELDP---GMYV--------------------------------GCWIEIQNKIYEF 264
DK+ +L+P G YV WIE+++K++ F
Sbjct: 912 DKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVF 971
Query: 265 VS---NEELTSEVSDKLAEIEENMKELGF--------------VLNRSLYQTKMK-AVAL 306
++ N + +++ L ++ M++ G V + +L K AVA
Sbjct: 972 IADNRNHPDWNRIAEFLDDVARRMRQEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAF 1031
Query: 307 GLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCK 363
G+++ P G P RV K+ +C + H A +F+S + RE++++D FH F+ G+CSC+
Sbjct: 1032 GVLNLPEGRPIRVTKNSKVCSHCHEAAKFISKMCNREIILRDSSRFHRFEGGRCSCR 1088
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 5/162 (3%)
Query: 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGT 66
+DV + W L+ A KA D++ L ++Q CCG D++++ +L + L G
Sbjct: 167 ADVRV-WTSLMSAYAKAGDFQEAVSLFRQMQ-CCGVSPDAHAVSCVLKCVSSLGSLTEGE 224
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ K GL AV N LI + SRCG+++DA F S ++++SW +I ++G
Sbjct: 225 VIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNG 284
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM--GLVGEA 166
A+DLF + T ++ T S L A A + GL+G+A
Sbjct: 285 WHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKA 326
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 129/310 (41%), Gaps = 58/310 (18%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILN--SCLNPILLNVGTQAQAY 71
WNL++ K ++E L ++ D ++I +L +CL+ G A Y
Sbjct: 385 WNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLS--CARDGLVAHGY 442
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + AV N LI+ ++ I DA L F P ++++SW +IS ++G SEA
Sbjct: 443 IVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEA 502
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYAL----------------MGLVGEAY-------- 167
++LF + ++ T S L A A GL+GE
Sbjct: 503 IELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDM 562
Query: 168 -----------RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP 216
++F SM + + ++ M+ + RAG+F++V ++ +V + P
Sbjct: 563 YSNCSDWQSTNQIFRSMGQKNVVS-----WTAMITSYMRAGLFDKVAGLLQEMVLDGIRP 617
Query: 217 LIWRTLLLSSRVHGDMKLA----------KYALDKLLELDPG---MYVGCW-IEIQNKIY 262
++ GD L + ++KLL + MYV C +E I+
Sbjct: 618 DVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIF 677
Query: 263 EFVSNEELTS 272
+ V+N+++ S
Sbjct: 678 DRVTNKDVIS 687
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 4/149 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ C EL R+ +DS ++ +L +C G Y
Sbjct: 484 ISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGY 543
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K GLI ++ N L+++ S C + F+S +KN +SWT +I++ + G +
Sbjct: 544 SVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKV 603
Query: 132 LDLFKDKQWRYTSMNPTTF--RSALKAYA 158
L ++ + P F SAL A+A
Sbjct: 604 AGLLQEMV--LDGIRPDVFAVTSALHAFA 630
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 57/126 (45%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + ++A ++ V LL+ + L D +++ L++ L G Y
Sbjct: 585 VSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGY 644
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G+ V N L+ + +C +++A L F K+ +SW +I + P+E+
Sbjct: 645 TIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNES 704
Query: 132 LDLFKD 137
LF D
Sbjct: 705 FSLFSD 710
>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
Length = 605
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 179/372 (48%), Gaps = 54/372 (14%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ +L C N L G Q + K L VG L+++ +CG +DDA F
Sbjct: 235 TLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEM 294
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
K+ ++W +IS HG +A+ LF+ + + T + L A GL
Sbjct: 295 HTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGI 354
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
+ F +M+E Y+IEP +HYS MV+ L RAG+ E + I + P + P + TLL + R
Sbjct: 355 QCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSM-PFEPHPSAYGTLLTACR 413
Query: 228 VHGDMKLAKYALDKLLELDP---GMYVG-------------------------------- 252
V+ +++ A++A KL+E DP G YV
Sbjct: 414 VYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGY 473
Query: 253 CWIEIQNKIYEFVSNEELTSE---VSDKLAEIEENMKELGFV--LNRSLY--------QT 299
W+EI+ +EF SN+ L + + DKL + + MK +G+ L+ +L+ Q
Sbjct: 474 SWMEIKGVRHEFRSNDRLHPQLDLIHDKLDRLGKLMKAMGYSPDLDFALHDVEESLKSQM 533
Query: 300 KMK-----AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHH 354
M+ A+A GLIS GM R+ K++ +CG H+A + +S I +RE++++D FHH
Sbjct: 534 LMRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHH 593
Query: 355 FKDGKCSCKDAY 366
F+ G CSC D +
Sbjct: 594 FRGGHCSCGDYW 605
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 78 ISHP-AVG-NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
I HP AV N L++ + CG ID A F + P ++ SW ++S +G EA +F
Sbjct: 67 IPHPDAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMF 126
Query: 136 KDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGR 195
+ R N ++ + + A A G +G A LF + E + ++ MV
Sbjct: 127 RAMPAR----NAVSWNAMVAARASSGDMGAAENLFRNAPE----KTDAILWTAMVSGYMD 178
Query: 196 AGMFEEVLEFIKGI 209
G ++ +E+ + +
Sbjct: 179 TGNVQKAMEYFRAM 192
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 28/126 (22%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWR--- 141
N +++ S+ G I++A+ F++ P +N++SW +++AR + G A +LF++ +
Sbjct: 107 NTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNAMVAARASSGDMGAAENLFRNAPEKTDA 166
Query: 142 --YTSM-----------------------NPTTFRSALKAYALMGLVGEAYRLFLSMEEV 176
+T+M N ++ + + Y G+A R+F +M E
Sbjct: 167 ILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVED 226
Query: 177 YHIEPS 182
++P+
Sbjct: 227 AIVQPN 232
>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 762
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/362 (29%), Positives = 160/362 (44%), Gaps = 62/362 (17%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G Q A K G +S VG L+N+ ++CG I+ A AF + +SWT +I+
Sbjct: 399 LEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIERASKAFVEMSIRTLISWTSMITG 458
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
+G P +AL LF+D + N TF L A + G+V EA F M+ Y I P
Sbjct: 459 YAQNGQPQQALLLFEDMRLAGVRPNKITFVGVLSACSHAGMVDEALDYFQMMKNEYKITP 518
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYAL 239
+HY+ +++ R G +E +FIK + L P IW L+ R G ++L YA
Sbjct: 519 VMDHYACLIDMFVRLGRLDEAFDFIKEM---DLEPNEFIWSILIAGCRSQGKLELGFYAA 575
Query: 240 DKLLELDP----------GMYVGC-------------------------WIEIQNKIYEF 264
++LL L P MY+ WI I++KIY F
Sbjct: 576 EQLLNLKPKDTETYNLLLNMYLSAGKWKEVSRVRKMMKEEKLGRLKDWSWISIKDKIYSF 635
Query: 265 VSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL-------------------YQTKMK 302
N + E+ + L + E K G+ SL Y ++
Sbjct: 636 KRNARSHAQSGEMYELLGNLHEKAKSFGYEWEESLEVTDEEEDADEEKALTSIVYHSEKL 695
Query: 303 AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
A+A GL++ + +P RV KS+ MC H+ R +S + RE++++D H F +G CSC
Sbjct: 696 AIAFGLLNTSNAVPIRVTKSISMCRDCHNFIRIISLLSAREIIIRDSKRLHKFINGHCSC 755
Query: 363 KD 364
D
Sbjct: 756 GD 757
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 65/143 (45%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ + E+ ++ + + +Y++ L++ + +G Q Y
Sbjct: 136 VSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTALSASSDLHSKELGKQIHGY 195
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + ++GN L ++ S+CG ++ A AF+ +KN +SWT +ISA ++G +
Sbjct: 196 SIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAATG 255
Query: 132 LDLFKDKQWRYTSMNPTTFRSAL 154
L F + N T SAL
Sbjct: 256 LQFFVEMLSECVEPNEFTLTSAL 278
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 49/94 (52%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
++S IL C++ L++ + A++ K G + L+N+ ++CG ++ A
Sbjct: 67 VESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVYAKCGTMETARKV 126
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
F P +N +SWT +++ V+ P A+ +F++
Sbjct: 127 FDELPRRNVVSWTTLMTGYVHDSKPELAVQVFRE 160
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/400 (26%), Positives = 190/400 (47%), Gaps = 54/400 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ ++ ++ V L +Q+ D +++ IL +C + L +G A+ Y
Sbjct: 338 VSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTY 397
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + + +GN LI++ +CG ++ A F +K+ +WT +I N+GH EA
Sbjct: 398 IDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEA 457
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L +F + + T+ + A +GLV + F +M + I+P+ HY MV+
Sbjct: 458 LTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVD 517
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
LGRAG +E LE I + P K ++W +LL + RVH +++LA+ A +++LEL+P
Sbjct: 518 LLGRAGHLKEALEVIMNM-PVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGA 576
Query: 248 ------GMYVGC--W-----------------------IEIQNKIYEFVSNEE---LTSE 273
+Y C W +E+ +YEFV+ ++ + E
Sbjct: 577 VYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKE 636
Query: 274 VSDKLAEIEENMKELGFVLNRS--------------LYQTKMK-AVALGLISFPHGMPTR 318
+ KL +++++ G+ + S LY K A+A LIS G+ R
Sbjct: 637 IYAKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSEKLAIAYALISSGKGVTIR 696
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDG 358
++K++ MC H +S + REL+V+D FHHF+ G
Sbjct: 697 IVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 36/201 (17%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGTQAQ 69
+ WN++L + K YE L ++ C + +S ++ +L++C L G
Sbjct: 203 VTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIY 262
Query: 70 AYMTKRGLIS-HPAVGNCLININSRCGKIDDA---------------------------- 100
K G++ + + N LI++ + CG++D A
Sbjct: 263 NKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRI 322
Query: 101 DLA---FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAY 157
DLA F PE++ +SWT +I + E L LF+D Q + T S L A
Sbjct: 323 DLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTAC 382
Query: 158 ALMGL--VGEAYRLFLSMEEV 176
A +G +GE + ++ ++
Sbjct: 383 AHLGALELGEWAKTYIDKNKI 403
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 179/380 (47%), Gaps = 64/380 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D++++ ++ C + L++G +YM K G+ +G L+ + S+CG +D+A F
Sbjct: 207 DAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVF 266
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ E++ +W+ +I+ HGH +AL LF + T N TF S L A + GLV
Sbjct: 267 QGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVE 326
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ +++F +M Y I P +HY MV+ RAGM +FI+ +P + ++WRTLL
Sbjct: 327 KGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQ-TMPIEPNVVLWRTLLG 385
Query: 225 SSRVHGDMKLAKYALDKLLELDPGM---YV---------GCW------------------ 254
+ + HG L ++ K+L+LDP YV G W
Sbjct: 386 ACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQ 445
Query: 255 -----IEIQNKIYEFVSNEELTSE-----------------------VSDKLAEIEENMK 286
IEI +++F+ +E E D L +I+E K
Sbjct: 446 HGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQVGHVNSTVDVLHDIDEEEK 505
Query: 287 ELGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVV 346
E L+ ++ A+A GL+ P+G P R++K++ +C H + +S + RE++V
Sbjct: 506 EYALGLH-----SERLAIAYGLLHTPNGSPIRIVKNLRVCRDCHEVIKLISEVYNREIIV 560
Query: 347 KDPGSFHHFKDGKCSCKDAY 366
+D FHHF++ CSC D +
Sbjct: 561 RDRVRFHHFRERGCSCNDYW 580
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 9/232 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYM 72
WN +++ D + L R CG +SY+ +L +C + L G + + +
Sbjct: 75 WNTIIRG-YSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQI 133
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K GL + N LI + + CG +D A + F PE +S SW+ ++S +G EAL
Sbjct: 134 VKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEAL 193
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGL--VGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
LF++ Q S + T S + +G +G+ ++ E V + + +V
Sbjct: 194 KLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGV---KIDVVLGTALV 250
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
+ G + L+ +G+ + W T++ +HG + A D +
Sbjct: 251 GMYSKCGSLDNALKVFQGMAERDVTA--WSTMIAGYAIHGHGEKALQLFDAM 300
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/413 (25%), Positives = 190/413 (46%), Gaps = 64/413 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ + ++ EL + +Q + + +++SC + L +G +A Y
Sbjct: 217 VTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDY 276
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G+ + +G L+++ +RCG ID A F+ PE+++LSWT +I+ HG+ +
Sbjct: 277 VVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERS 336
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L F + TF + L A + GLV +++F SM+ + +EP EHY MV+
Sbjct: 337 LKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVD 396
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG EE F+ + P K +W LL + R+H + ++ + L++L P G
Sbjct: 397 LLGRAGKLEEAERFVLKM-PVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQHSG 455
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEELTSEV-- 274
YV IE+ ++++F + E+
Sbjct: 456 YYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSHPEMDK 515
Query: 275 ---------------------SDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPH 313
+D L +I+E KE L+R ++ A+A G++
Sbjct: 516 IERMWEEILMRIRAAGYRGNTADALFDIDEEEKESA--LHR---HSEKLAIAFGMMRSEA 570
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G P R++K++ +C H+A + +S + REL+V+D FHHF+ G CSC D +
Sbjct: 571 GTPIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 31/148 (20%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININS------------ 92
D+ + ++ SC +++G+QA ++ K G V N L+++ +
Sbjct: 118 DNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIF 177
Query: 93 -------------------RCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+CG ++ A F PEKN ++W+ +IS + H +A++
Sbjct: 178 QRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVE 237
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMG 161
LFK Q + N T S + + A +G
Sbjct: 238 LFKVLQSQGVRANETVMVSVISSCAHLG 265
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/409 (27%), Positives = 194/409 (47%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W ++ ++A + +L +Q D+ S+ + L++C L G +Y
Sbjct: 213 ISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSY 272
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + +G LI++ ++CG++++A FK+ +K+ +WT +IS HGH EA
Sbjct: 273 LNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREA 332
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F + Q N TF + L A + GLV E +F SME Y+++P+ EHY +V+
Sbjct: 333 ISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVD 392
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG+ +E FI+ + P K +IW LL + R+H +++L + + L+ +DP G
Sbjct: 393 LLGRAGLLDEAKRFIQEM-PLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGG 451
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEELTSE--- 273
YV GC I ++ +EF++ + E
Sbjct: 452 RYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEK 511
Query: 274 VSDKLAEIEENMKELGFVLNRS---------------LYQTKMK-AVALGLISFPHGMPT 317
+ K + ++E G+V ++Q K A+ GLI G
Sbjct: 512 IQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTII 571
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C H + +S I +R++V++D FHHF+DGKCSC D +
Sbjct: 572 RIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 5/188 (2%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WNL+++ + + E L +R+ ++Y+ +L +C N TQ A +T
Sbjct: 83 WNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQIT 142
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G + N LIN + G A L F PE + +SW +I V G AL
Sbjct: 143 KLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALT 202
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF+ + N ++ + + Y + EA +LF M+ +EP + + A
Sbjct: 203 LFR----KMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNS-DVEPDNVSLANALSAC 257
Query: 194 GRAGMFEE 201
+ G E+
Sbjct: 258 AQLGALEQ 265
>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
Length = 528
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 110/376 (29%), Positives = 184/376 (48%), Gaps = 60/376 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
++ ++ +L +C + + G + + GL + VG ++++ S+CG+++ A AF
Sbjct: 155 NAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAF 214
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ EKN LSW+ +I+ HG EAL++F + + N TF S L A + GL+
Sbjct: 215 RKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLD 274
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTL 222
E + +M++ + IE EHY MV+ LGRAG +E IK + K+ P IW L
Sbjct: 275 EGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEM---KVKPDAAIWGAL 331
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW---------------- 254
L + R+H +++LA+ ++ +L ELD G YV G W
Sbjct: 332 LSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEAGMWKDVERIRLLVKTRRIE 391
Query: 255 -------IEIQNKIYEFVSNEELTS---EVSDKLAEIEENMKELGFVLNRS--------- 295
E++ KIY F ++ E+ L ++ E M+E G+V N
Sbjct: 392 KPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEE 451
Query: 296 -------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
++ K+ AVA L++ +IK++ +C H+A +F++ I ERE++++D
Sbjct: 452 EKESALRIHSEKL-AVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRD 510
Query: 349 PGSFHHFKDGKCSCKD 364
FHHFKDG CSC+D
Sbjct: 511 LQRFHHFKDGLCSCRD 526
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 111/357 (31%), Positives = 181/357 (50%), Gaps = 54/357 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ +L++C L +G +A YM K GL + GN L+++ ++CG I A F
Sbjct: 95 DGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVF 154
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
EK+ +SWT +I +G EAL+LFK+ + + + TF L A + G+V
Sbjct: 155 DEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVD 214
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F M+E Y I P EHY MV+ LGRAG+ ++ EFI+ + P + ++WRTLL
Sbjct: 215 EGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNM-PMQPNAVVWRTLLG 273
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW------------------ 254
+ +HG + L + A +LL+L+P G YV W
Sbjct: 274 ACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKT 333
Query: 255 -----IEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS----------- 295
+E++N+++EFV + T E+ KLAEI + +K G+V + S
Sbjct: 334 PGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEK 393
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
Y ++ A+A LI+ G+P RV+K++ +C H A + +S + +RE+VV+D
Sbjct: 394 ETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRD 450
>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 904
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 194/410 (47%), Gaps = 61/410 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLC-CGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ A ++ YE E+ +Q C +D ++ I ++C + L++
Sbjct: 434 VSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYY 493
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ K + +G L+++ SRCG + A F S ++ +WT I A G+
Sbjct: 494 YIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVER 553
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A++LF + + + F AL A GLV + +F SME+++ + P + HY MV
Sbjct: 554 AIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMV 613
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG+ EE L+ IK + P + +IW +LL + RV G++++A +A +K+ L P
Sbjct: 614 DLLGRAGLLEEALQLIKDM-PTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERT 672
Query: 248 GMYV---------GCW-----------------------IEIQNKIYEFVSNEELTSE-- 273
G YV G W I+I+ K +EF S +E E
Sbjct: 673 GSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMR 732
Query: 274 -VSDKLAEIEENMKELG------------------FVLNRSLYQTKMKAVALGLISFPHG 314
+ L E+ + +LG F+L+R ++ A+A GLIS G
Sbjct: 733 KIEAMLDELSQRASDLGHVPDLSNVLMDVDEQEKIFMLSR---HSEKLAMAFGLISSNKG 789
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
R++K++ +C Y HS +F S + RE++++D FH + GKCSC D
Sbjct: 790 TTIRIVKNLRVCSYCHSFAKFASKVYNREIILRDNNRFHFIRQGKCSCSD 839
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y+ L+ C G Q + K V N L++ + CG++D A F
Sbjct: 132 DKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVF 191
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
E+N +SWT +I +A+DLF
Sbjct: 192 DEMSERNVVSWTSMICGYARREFAKDAVDLF 222
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 95 GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY-TSMNPTTFRSA 153
G++D A F + PEKN +SW IISA V EA+++F Q + +++ T S
Sbjct: 416 GEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSI 475
Query: 154 LKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIV 210
A +G + A ++ +E+ I+ + +V+ R G E + +
Sbjct: 476 ASACGHLGALDLAKWIYYYIEK-NRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLT 531
>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/410 (25%), Positives = 189/410 (46%), Gaps = 57/410 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ +A ++ + + ++ +D +++ +L+SC + LN+G +
Sbjct: 177 VAWNAMISCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRI 236
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+++GL+ + VGN LI++ ++CG +D A F P +++ +W +I HG EA
Sbjct: 237 ASEKGLLRNVFVGNALIDMYAKCGSLDGALEVFNGMP-RDAFTWNSMIVGFGVHGFGDEA 295
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F N F L + GLV E F M ++++P +HY +V+
Sbjct: 296 IYFFNQMLEAGVRPNSIAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVD 355
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD----- 246
GRAG E+ LE I G P + P++WR LL SS++H ++ + + A+ L +L
Sbjct: 356 MYGRAGKLEKALEII-GDSPWQDDPVLWRILLSSSKIHKNVVIGEIAMRNLSQLGAVNAG 414
Query: 247 -----PGMYVGC-------------------------WIEIQNKIYEFVSNEELTSE--- 273
+Y G WIE+ ++++ FV +++ +
Sbjct: 415 DCVLLATIYAGANDEQGVARMRKLIKKQGIKTTPGWSWIEVSDQVHRFVVDDKSHPDSEM 474
Query: 274 VSDKLAEIEENMKELGFVLNR-----------------SLYQTKMKAVALGLISFPHGMP 316
+ KL E+ G+V ++ S Y ++ A+A GL P G
Sbjct: 475 IYQKLEEVTHKATMAGYVEDKSQFIFHGSCSEECLESSSTYHSEKLAIAFGLAKTPEGTS 534
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C H +F+S R+++V+D FHHFK G CSC+D +
Sbjct: 535 LRIVKNLRVCRDCHEFTKFVSRAFNRDIIVRDRLRFHHFKGGLCSCRDYW 584
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 39/207 (18%), Positives = 82/207 (39%), Gaps = 18/207 (8%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+++ L +C L + + + G V L+ R G ++ A + F
Sbjct: 109 DTFTFSFTLKACERIKALKKCEEVHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVF 168
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ PE++ ++W +IS G+ EAL ++ + ++ T L + + +G +
Sbjct: 169 DNMPERDLVAWNAMISCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALN 228
Query: 165 EAYRLFLSMEEVYHIEPSEEHY-------SIMVEALGRAGMFEEVLEFIKGIVPGKLCPL 217
+L H SE+ + +++ + G + LE G+
Sbjct: 229 MGVKL--------HRIASEKGLLRNVFVGNALIDMYAKCGSLDGALEVFNGMPRD---AF 277
Query: 218 IWRTLLLSSRVHGDMKLAKYALDKLLE 244
W ++++ VHG A Y +++LE
Sbjct: 278 TWNSMIVGFGVHGFGDEAIYFFNQMLE 304
>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 1011
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 114/418 (27%), Positives = 191/418 (45%), Gaps = 74/418 (17%)
Query: 12 IPWNLLLKACIKAKDYE--------MVHELLERIQLCCGFIDSYSICDILNSCLNPILLN 63
+ W L++ + YE MV EL+ +D ++ I+++C N +L
Sbjct: 605 VSWGLMVSGYVWNGKYEDGLKTFRLMVRELV--------VVDIRTVTTIISACANAGILE 656
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G AY K G VG+ LI++ S+ G +DDA F+ T E N + WT +IS
Sbjct: 657 FGRHVHAYNHKIGHRIDAYVGSSLIDMYSKSGSLDDAWTIFRQTNEPNIVFWTSMISGCA 716
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
HG +A+ LF++ + N TF L A GL+ E R F M++ Y I P
Sbjct: 717 LHGQGKQAICLFEEMLNQGIIPNEVTFLGVLNACCHAGLLEEGCRYFRMMKDAYCINPGV 776
Query: 184 EHYSIMVEALGRAGMFEEVLEFI--KGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
EH + MV+ GRAG E FI GI +W++ L S R+H ++++ K+ +
Sbjct: 777 EHCTSMVDLYGRAGHLTETKNFIFENGI---SHLTSVWKSFLSSCRLHKNVEMGKWVSEM 833
Query: 242 LLEL---DPGMYV--------------------------------GCWIEIQNKIYEFVS 266
LL++ DPG YV WI+++++I+ F+
Sbjct: 834 LLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGIKKQPGQSWIQLKDQIHTFIM 893
Query: 267 NEE---LTSEVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGL 308
+ E+ L + +KE+G+ + L + ++ AV G+
Sbjct: 894 GDRSHPQDEEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFGI 953
Query: 309 ISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
I+ + P R+IK++ +C H+ ++ S +++RE++++D FHHFK G CSC D +
Sbjct: 954 INTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIILRDIHRFHHFKHGGCSCGDYW 1011
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 11 EIP------WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
EIP W +L+ +A E+V +L ++ + Y++ + C I L +
Sbjct: 349 EIPQRNTQTWTILISGFSRAGSSEVVFKLFREMRAKGACPNQYTLSSLFKCCSLDINLQL 408
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G A+M + G+ + +GN ++++ +C + A+ F+ E + +SW +ISA +
Sbjct: 409 GKGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAERVFELMNEGDVVSWNIMISAYLR 468
Query: 125 HGHPSEALDLFK 136
G ++LD+F+
Sbjct: 469 AGDVEKSLDMFR 480
>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
gi|194689034|gb|ACF78601.1| unknown [Zea mays]
gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
Length = 606
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/411 (26%), Positives = 192/411 (46%), Gaps = 56/411 (13%)
Query: 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQ 67
D + +N ++ A +++ L +Q ++ +L++C L +G
Sbjct: 196 GDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQLGRW 255
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
Y+ K GL S V L+++ ++CG ++DA F+ ++ +W+ +I A NHG+
Sbjct: 256 LHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWSVMIVAYANHGY 315
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
EA+ LF++ + + + TF L A + GLV E R F M++ + I P +HY
Sbjct: 316 GREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGLRYFDDMKD-HGIVPGIKHYG 374
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
+ + L R+G E +FI + P P++WRTLL + HGD++L K +++LELD
Sbjct: 375 CVTDLLARSGQLERAYKFIDEL-PINPTPILWRTLLSACGGHGDVELGKRVFERILELDD 433
Query: 248 ---GMYV---------GCW-----------------------IEIQNKIYEFVSNE---E 269
G YV G W IEI N ++EF + +
Sbjct: 434 SHGGDYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEIDNTVHEFFAGDGRHP 493
Query: 270 LTSEVSDKLAEIEENMKELGFVLNRS----------------LYQTKMKAVALGLISFPH 313
+ E + E+ + +K +G++ + S Y ++ A+A GL++
Sbjct: 494 KSQEARKMVDEVIDQLKLVGYIPDTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAP 553
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G RV+K++ +C HS +F+S + R ++++D FHHF+ G CSC D
Sbjct: 554 GATLRVVKNLRVCPDCHSMAKFVSMVFNRRIILRDLNRFHHFERGICSCGD 604
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 54/117 (46%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+Y+ +L +C G QA A K G H V LIN+ + CG A + F
Sbjct: 132 DTYTFVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTF 191
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+S+ +I+A V P EAL LF++ Q + + P T S L A AL+G
Sbjct: 192 GRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLG 248
>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Vitis vinifera]
Length = 540
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 182/376 (48%), Gaps = 56/376 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D++++ ++ C + +L++G +Y+ K G+ +G L+ + S+CG +D+A F
Sbjct: 167 DAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVF 226
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ E++ +W+ +I+ HGH +AL LF + N TF S L AY+ GLV
Sbjct: 227 QGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVE 286
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ +++F +M Y I P +HY MV+ RAGM +FI+ +P + ++WRTLL
Sbjct: 287 KGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQ-TMPIEPNVVLWRTLLG 345
Query: 225 SSRVHGDMKLAKYALDKLLELDPGM---YV---------GCW------------------ 254
+ + HG L ++ K+L+LDP YV G W
Sbjct: 346 ACKTHGYKGLGEHISRKILKLDPSSPENYVFVSNVYASLGRWSSVCQVRSLMKEKAPKKQ 405
Query: 255 -----IEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNR------------ 294
IEI +++F+ EE ++ L ++ +K++G V +
Sbjct: 406 HGWSSIEINFMVHKFIMGEESHPKREKIYGMLHQMARKLKQVGHVASTVDVLHDIDEEEK 465
Query: 295 ----SLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
L+ ++ A+A GL+ P+G P R++K++ C H + +S + RE++++D
Sbjct: 466 EYALGLHSERL-AIAYGLLHTPNGSPIRIVKNLRACRDCHEVIKLISEVYNREIILRDRV 524
Query: 351 SFHHFKDGKCSCKDAY 366
FHHF++ CSC D +
Sbjct: 525 CFHHFRERGCSCNDYW 540
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 98/231 (42%), Gaps = 7/231 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN +++ + L + + LC +SY+ +LN+C + L G + + +
Sbjct: 35 WNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVLNACCKLLRLCEGQELHSQIV 94
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K GL + N LI + + CG +D A + F PE +S SW+ ++S +G E L
Sbjct: 95 KAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYSQNGQAVETLK 154
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGL--VGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L ++ Q S + T S + +G+ +G+ ++ E V + + +V
Sbjct: 155 LLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGV---KIDVVLGTALVG 211
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
+ G + L+ +G+ + W ++ +HG + A D +
Sbjct: 212 MYSKCGSLDNALKVFQGMAERDV--TTWSIMIAGYAIHGHDEKALQLFDAM 260
>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
mitochondrial-like [Vitis vinifera]
Length = 694
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 180/375 (48%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L +C + L AY+ + G + + L+N+ ++ G+++ ++ F
Sbjct: 321 DQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIF 380
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ +++ ++WT +++ H EA+ LF ++ TF L A + GLV
Sbjct: 381 EEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVE 440
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F M EVY +EP +HYS MV+ LGR+G E+ E IK + P + +W LL
Sbjct: 441 EGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM-PMEPSSGVWGALLG 499
Query: 225 SSRVHGDMKLAKYALDKLLELDPGMY------------VGCW------------------ 254
+ RV+G+++L K ++LL LDP + G W
Sbjct: 500 ACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRN 559
Query: 255 -----IEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELG------FVLNRSLYQTK 300
IE NKI+ FV ++L + E+ KL E+ ++E G FVL+ + K
Sbjct: 560 PGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVK 619
Query: 301 MK---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ A+A GL+ G+P + K++ +CG HS +F S + +R ++++D
Sbjct: 620 VDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKR 679
Query: 352 FHHFKDGKCSCKDAY 366
FHHF DG CSC+D +
Sbjct: 680 FHHFADGLCSCRDYW 694
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 57/119 (47%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ ++++C + L+ G + K G+ V N LIN+ + G +D A F+
Sbjct: 223 TLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEM 282
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
P ++ +SW ++ ++G+ + +DLF + + + T + L+A GL +A
Sbjct: 283 PVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQA 341
>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
Length = 602
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/406 (26%), Positives = 185/406 (45%), Gaps = 54/406 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ ++ EL +Q D ++ +L + + L + + +
Sbjct: 196 VTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRF 255
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G+ + N LI+ ++CG +D A F+ +++ +SWT +I A G EA
Sbjct: 256 VEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEA 315
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ +F++ + + F L A + G+V E F +M+ Y IEP EHY MV+
Sbjct: 316 VRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVD 375
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM-- 249
GRAGM E +EF++ +P + P+IWR+L+ + R HG ++L + LL P
Sbjct: 376 MFGRAGMVERAMEFVR-TMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEA 434
Query: 250 -YV-------------------------------GCWI-EIQNKIYEFVSNEELTSEVSD 276
Y+ GC I E+ +++EF++ +E + D
Sbjct: 435 NYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKD 494
Query: 277 KLAEIEENMKEL---GFVLNRS---------------LYQTKMKAVALGLISFPHGMPTR 318
+EE +EL G + S + ++ A+A L+ P G R
Sbjct: 495 IYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVR 554
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
V+K++ +C H+A + +S + RE+VV+D FH FKDG CSCKD
Sbjct: 555 VVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKD 600
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 6/169 (3%)
Query: 45 DSYSICDILNSCLN-PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC---GKIDDA 100
+ ++ +L +C P +VG QA A K G + V N LI++ S C G + DA
Sbjct: 125 NKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYS-CFGGGFLGDA 183
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
F P++++++W+ +I V G S+A++LF++ Q + T L A +
Sbjct: 184 RNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDL 243
Query: 161 GLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI 209
G + E R E I S + +++ L + G + + +G+
Sbjct: 244 GAL-ELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGM 291
>gi|125547430|gb|EAY93252.1| hypothetical protein OsI_15058 [Oryza sativa Indica Group]
Length = 407
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 174/346 (50%), Gaps = 33/346 (9%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + ++ +C NP LL + + + + V N ++ + ++C ++ A F
Sbjct: 67 DPQAFYELAAACSNPKLLEELRKIHDFFLRSPFRADLQVNNKMLEMYAKCAAMNHARRTF 126
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGL 162
P++N SW +I +G AL LF++ + +Y + PT TF L A A
Sbjct: 127 DHMPDRNMDSWHIMIDGYAVNGLGDVALQLFEEMKTKY-GIAPTAHTFTLVLNACANSEA 185
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
+ EA+ F +M + IEP EHY ++E LG++G E +E+I+ + P + +W +L
Sbjct: 186 IEEAFLYFDAMSRDHGIEPGVEHYVGIIEVLGKSGHLNEAVEYIEKL-PFEPTATVWESL 244
Query: 223 LLSSRVHGDMKLAKYALDKLLELDPG-------------MYVGC-WIEIQNKIYEF---- 264
L +R++GD+ L A + L+ LDP +G ++ +NK+ E+
Sbjct: 245 LNLARMNGDIDLEDRAEELLVSLDPTKVNPKKLPTPPPKRRLGINMLDGRNKLVEYRLPP 304
Query: 265 ------VSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPHGMPTR 318
V+ + + L +I++ KE LY ++ A+A GLIS P P R
Sbjct: 305 KIEKKVVNEQRYVPDTRYVLHDIDQEAKEQAL-----LYHSERLAIAYGLISTPARTPLR 359
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+IK++ +CG H+A + MS I+ REL+V+D FHHFKDGKCSC D
Sbjct: 360 IIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGD 405
>gi|449519292|ref|XP_004166669.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g15690-like [Cucumis sativus]
Length = 588
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 176/377 (46%), Gaps = 53/377 (14%)
Query: 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRG 76
LLK +KA D + H L E CG S+ +++ Y +
Sbjct: 234 LLKQGVKA-DVDCFHLLFE----LCGKSKSFDNAKVVHD---------------YFLQSS 273
Query: 77 LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
S + N ++ + RCG + DA F P+++ SW ++ ++G E L+LF+
Sbjct: 274 CRSDLQLNNEVLEMYGRCGSMSDARRVFDHMPDRSIDSWHLMMKGYADNGLGDEGLELFE 333
Query: 137 DKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA 196
+ + N TF + A A V E + F SM+ YHI P HY ++ LG
Sbjct: 334 NMKNLGLQPNSQTFLYVMSACASANAVEEGFLYFESMKNDYHITPDTNHYLGLLGILGEP 393
Query: 197 GMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGCWIE 256
G E E+++ + P + +W TL +R+HGD+ L YA + +++LDP V I
Sbjct: 394 GHIHEAFEYVEKL-PMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNKIS 452
Query: 257 I--------------QNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRS------- 295
+N+I EF N L + KL ++ MKE G+V +
Sbjct: 453 TPPPKNXSAISMLDGKNRIVEF-RNPTLYKD-DXKLKALKA-MKEQGYVPDTRYVLHDID 509
Query: 296 --------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
LY ++ A+A GLIS P P R+IK++ +CG H+A + MS I+ REL+V+
Sbjct: 510 QEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVR 569
Query: 348 DPGSFHHFKDGKCSCKD 364
D FHHFKDGKCSC D
Sbjct: 570 DNKRFHHFKDGKCSCGD 586
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 175/365 (47%), Gaps = 68/365 (18%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L +G + ++++ GL ++G L+++ SRCG I+++ F E+N L+WT +I+
Sbjct: 202 LELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALING 261
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
HG +EAL +F + + + TF L A + GLV E + +F S+ Y +EP
Sbjct: 262 LAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEP 321
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
EHY MV+ LGRAG+ E +F+ G+ P + +IWRTLL + H ++LA+ +K
Sbjct: 322 LPEHYGCMVDLLGRAGLLNEACKFVDGM-PIRPNSIIWRTLLGACVNHNYIELAEKVKEK 380
Query: 242 LLELDP---GMY---------VGCW-----------------------IEIQNKIYEFVS 266
+ ELD G Y VG W I + + I+EFV+
Sbjct: 381 INELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVA 440
Query: 267 NEE-----------------------LTSEVSDKLAEIEENMKE--LGFVLNRSLYQTKM 301
+ T ++S+ L +IEE KE LG Y ++
Sbjct: 441 GDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIEEEEKESTLG-------YHSEK 493
Query: 302 KAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCS 361
AVA L+ F RV+K++ +C H ++ S + ERE++++D FHHF G CS
Sbjct: 494 LAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIRDRNRFHHFSKGSCS 553
Query: 362 CKDAY 366
C+D +
Sbjct: 554 CRDYW 558
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 11/189 (5%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L +C L G + + K G S V N LI+ CG +D A AF
Sbjct: 86 DHFTFPFVLKACAR---LQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKAF 142
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYT-SMNPTTFRSALKAYALMG-- 161
+ PE++ +SW+ +I+ +G EAL LF+ Q T + S + A +++G
Sbjct: 143 EEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDL 202
Query: 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221
+G+ R F+S +E + + +V+ R G EE + + G+ L W
Sbjct: 203 ELGKWIRGFISRNG---LEFTVSLGTALVDMFSRCGCIEESMRVFDEM--GERNVLTWTA 257
Query: 222 LLLSSRVHG 230
L+ VHG
Sbjct: 258 LINGLAVHG 266
>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
Length = 820
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/415 (26%), Positives = 182/415 (43%), Gaps = 64/415 (15%)
Query: 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQ 69
++ WN ++ ++A + E L + + C + +L +C L G+Q
Sbjct: 412 TDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIH 471
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ K + VGN LI++ ++CG I DA L F E + +SW +IS HG
Sbjct: 472 SLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYG 531
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
EAL F+ + TF L A + GL+ F SM E Y IEP EHY+ M
Sbjct: 532 EALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCM 591
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
V LGR+G ++ + + I P + ++WR LL + +H D++L + + ++LE++P
Sbjct: 592 VWLLGRSGHLDKAAKLVHEI-PFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPED 650
Query: 248 --------GMYVGC-------------------------WIEIQNKIYEF---------- 264
+Y WIE Q +++ F
Sbjct: 651 EATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDT 710
Query: 265 -------------VSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISF 311
NE + S L ++E+ KE R ++ A+A GLI
Sbjct: 711 KLINGMLEWLNMKARNEGYVPDFSSVLLDVEDVDKE-----QRLWVHSERLALAYGLIRT 765
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P P R+IK++ +C H+A + +S I++R+++++D FHHF +G CSC D +
Sbjct: 766 PSISPLRIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 76/150 (50%)
Query: 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQA 68
D IPW+ ++ +++ E E+ R++ + +++ +L +C + + L +G Q
Sbjct: 310 DDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQI 369
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
++ K GL + V N L+++ ++CG+++++ F +P +SW +I V G+
Sbjct: 370 HCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNG 429
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+AL LFKD T+ S L+A A
Sbjct: 430 EKALILFKDMLECQVQGTEVTYSSVLRACA 459
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 68/147 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ ++ + +E +L R+++ ++++ +L +C+ + NVG
Sbjct: 212 VSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGC 271
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + VG LI++ + G +DDA F+ P+ + + W+F+I+ EA
Sbjct: 272 AFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEA 331
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
+++F + N T S L+A A
Sbjct: 332 IEMFCRMRRGLVLPNQFTLASLLQACA 358
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
+G A + K G S VG LI+ S CG + A F + K+ +SWT +++ V
Sbjct: 163 LGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYV 222
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ E+L LF + N TF S LKA
Sbjct: 223 ENECFEESLKLFSRMRIVGFKPNNFTFASVLKA 255
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
++Y +L SC+ G + K+G N L+N + + DA
Sbjct: 42 FNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKL 101
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALK 155
F P++N++S+ +I SEA+ LF Q +NP F + LK
Sbjct: 102 FDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLK 153
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 175/365 (47%), Gaps = 68/365 (18%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L +G + ++++ GL ++G L+++ SRCG I+++ F E+N L+WT +I+
Sbjct: 202 LELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALING 261
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
HG +EAL +F + + + TF L A + GLV E + +F S+ Y +EP
Sbjct: 262 LAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEP 321
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
EHY MV+ LGRAG+ E +F+ G+ P + +IWRTLL + H ++LA+ +K
Sbjct: 322 LPEHYGCMVDLLGRAGLLNEACKFVDGM-PIRPNSIIWRTLLGACVNHNYIELAEKVKEK 380
Query: 242 LLELDP---GMY---------VGCW-----------------------IEIQNKIYEFVS 266
+ ELD G Y VG W I + + I+EFV+
Sbjct: 381 INELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVA 440
Query: 267 NEE-----------------------LTSEVSDKLAEIEENMKE--LGFVLNRSLYQTKM 301
+ T ++S+ L +IEE KE LG Y ++
Sbjct: 441 GDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIEEEEKESTLG-------YHSEK 493
Query: 302 KAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCS 361
AVA L+ F RV+K++ +C H ++ S + ERE++++D FHHF G CS
Sbjct: 494 LAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIRDRNRFHHFSKGSCS 553
Query: 362 CKDAY 366
C+D +
Sbjct: 554 CRDYW 558
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 11/189 (5%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L +C L G + + K G S V N LI+ CG +D A F
Sbjct: 86 DHFTFPFVLKACAR---LQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVF 142
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYT-SMNPTTFRSALKAYALMG-- 161
+ PE++ +SW+ +I+ +G EAL LF+ Q T + S + A +++G
Sbjct: 143 EEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDL 202
Query: 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221
+G+ R F+S +E + + +V+ R G EE + + G+ L W
Sbjct: 203 ELGKWIRGFISRNG---LEFTVSLGTALVDMFSRCGCIEESMRVFDEM--GERNVLTWTA 257
Query: 222 LLLSSRVHG 230
L+ VHG
Sbjct: 258 LINGLAVHG 266
>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Brachypodium distachyon]
Length = 796
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/405 (30%), Positives = 183/405 (45%), Gaps = 55/405 (13%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ + EM L +++Q + +I L++C L++G +
Sbjct: 391 WNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIA 450
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
L + V LI++ +CG I +A F S KN +SW +IS HG +EAL
Sbjct: 451 NEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALK 510
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
L+KD + +TF S L A + GLV E +F SM Y I P EH + MV+ L
Sbjct: 511 LYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLL 570
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMY 250
GRAG +E E I + P IW LL + VH D LAK A KL EL+P G Y
Sbjct: 571 GRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEPENTGYY 630
Query: 251 V-------------------------------GC-WIEIQNKIYEFVSNEELTSEVSDK- 277
V GC IEI ++ + F++ + + SD
Sbjct: 631 VLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQ-SDAI 689
Query: 278 ---LAEIEENMKELGFVLNR--SLYQTKMK-------------AVALGLISFPHGMPTRV 319
L ++ M E G+ + +LY + + A+A GL++ G R+
Sbjct: 690 YLYLEKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLNTEPGTEIRI 749
Query: 320 IKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
IK++ +C H+A + +S + +R +VV+D FHHF+DG CSC D
Sbjct: 750 IKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGD 794
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%)
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A++ K GL ++ V L + R +D A AF + PEK SW +IS +G
Sbjct: 345 HAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLT 404
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
A+ LF+ Q NP T SAL A A +G
Sbjct: 405 EMAVALFQQMQALNVRPNPLTISSALSACAQLG 437
>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
Length = 714
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 180/375 (48%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L +C + L AY+ + G + + L+N+ ++ G+++ ++ F
Sbjct: 341 DQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIF 400
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ ++++++WT +++ H EA+ LF ++ TF L A + GLV
Sbjct: 401 EEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVE 460
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F M EVY +EP +HYS MV+ LGR+G E+ E IK + P + +W LL
Sbjct: 461 EGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM-PMEPSSGVWGALLG 519
Query: 225 SSRVHGDMKLAKYALDKLLELDPGMY------------VGCW------------------ 254
+ RV+G+++L K ++LL LDP + G W
Sbjct: 520 ACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTRN 579
Query: 255 -----IEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELG------FVLNRSLYQTK 300
IE NKI+ FV ++L + E+ KL E+ + E G FVL+ + K
Sbjct: 580 PGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDIDEEVK 639
Query: 301 MK---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ A+A GL+ G+P + K++ +CG HS +F S + +R ++++D
Sbjct: 640 VDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKR 699
Query: 352 FHHFKDGKCSCKDAY 366
FHHF DG CSC+D +
Sbjct: 700 FHHFADGLCSCRDYW 714
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 57/122 (46%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ ++++C L+ G + K G+ V N LIN+ + G +D A F
Sbjct: 240 NEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLF 299
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ P ++ +SW ++ ++G+ + +DLF + + + T + L+A GL
Sbjct: 300 EEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGR 359
Query: 165 EA 166
+A
Sbjct: 360 QA 361
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 111/415 (26%), Positives = 194/415 (46%), Gaps = 55/415 (13%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
++ I W ++ ++A ++ +L +Q D+ S+ + L++C L G
Sbjct: 236 MVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG 295
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+Y+TK + +G LI++ ++CG + +A FK+ K+ +WT +IS H
Sbjct: 296 KWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYH 355
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
GH EA+ F + Q N TF + L A + GLV E +F +ME Y+++P+ EH
Sbjct: 356 GHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEH 415
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
Y +V+ L RAG+ +E FI+ + P K +IW LL + R+H +++L + + L+ +
Sbjct: 416 YGCVVDLLSRAGLLDEAKRFIQEM-PLKPNAVIWGALLKACRIHKNIELGEEIGEILIAI 474
Query: 246 DP---GMYV-------------------------------GC-WIEIQNKIYEFVSNEEL 270
DP G YV GC I ++ +EF++ +
Sbjct: 475 DPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRS 534
Query: 271 TSE---VSDKLAEIEENMKELGFVLNRS---------------LYQTKMK-AVALGLISF 311
E + K + ++E G+V ++Q K A+ GLI
Sbjct: 535 HPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQHSEKLAITYGLIKT 594
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G R++K++ +C H + +S I +R++V++D FHHF+DGKCSC D +
Sbjct: 595 KPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 649
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 5/188 (2%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WNL+++ + + E L +R+ C ++Y+ +L +C N L TQ A +T
Sbjct: 112 WNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQIT 171
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G + N LIN + G A L F P+ +++SW +I G AL
Sbjct: 172 KLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALT 231
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF+ + N ++ + + Y G+ EA +LF M+ +EP + + A
Sbjct: 232 LFR----KMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNS-DVEPDNVSLANALSAC 286
Query: 194 GRAGMFEE 201
+ G E+
Sbjct: 287 AQLGALEQ 294
>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 755
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 172/376 (45%), Gaps = 54/376 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D ++ I+++C N +L G Q AY+ K GL VG+ LI++ S+ G +DDA +
Sbjct: 381 VDIRTVATIISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMI 440
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F+ E N + WT +IS HG EA+ LF+ N TF L A + +GL+
Sbjct: 441 FEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNLGIIPNEVTFVGVLNACSHVGLI 500
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E R F M++ YHI P EHY+ MV GRAG E FI +WR+ L
Sbjct: 501 EEGCRYFRMMKDTYHINPEVEHYTSMVNLYGRAGHLIEAKNFIFENSISHFTS-VWRSFL 559
Query: 224 LSSRVHGDMKLAKYALDKLLE---LDPGMYV----------------------------- 251
S R+H + + K + LL+ DP Y+
Sbjct: 560 SSCRLHKNFNMGKSVSEMLLQSAPSDPDAYILLSNMCSSNHQWDEAAIVRSLMYQRGVKK 619
Query: 252 ---GCWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL--------- 296
W++++++I+ F + E+ L + +KE+G+ L+ L
Sbjct: 620 QPGQSWVQLKDQIHSFTVGDRSHPQDKEIYSYLDSLIGRLKEIGYSLDAKLVMQDVEEEQ 679
Query: 297 ------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
+ ++ A+ +I+ P R++K++ +C H+ ++ S ++ERE++V+D
Sbjct: 680 GEVLISHHSEKLALVFSIINTSPRTPIRIMKNLRICNDCHNFFKYASQLLEREIIVRDTH 739
Query: 351 SFHHFKDGKCSCKDAY 366
FHHFK CSC + +
Sbjct: 740 RFHHFKQSSCSCGEYW 755
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 14 WNLLLKACIKAK-DYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
W +L+ +A E+V L +Q + Y++ +L C + G A++
Sbjct: 101 WTILISGFARAAGSSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKGIHAWI 160
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
+ G+ + N ++++ +C + + A+ F+ EK+ +SW +I A + G ++L
Sbjct: 161 LRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDVEKSL 220
Query: 133 DLFKD 137
++F++
Sbjct: 221 EMFRN 225
>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
Length = 617
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 170/375 (45%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ ++ C LL G Q A + K LI VG+ L+++ +CG I + F
Sbjct: 244 NEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLF 303
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ ++W +I+ HGH EA+ F + N F S L A + GLV
Sbjct: 304 NEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVD 363
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F SM+E + IEP EEHYS +++ GRAG +E +FI + P K W +LL
Sbjct: 364 EGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEM-PIKPNAYGWCSLLG 422
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMYVG---------------------- 252
+ R+ G +L + A L++L+P G+Y
Sbjct: 423 ACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKL 482
Query: 253 ---CWIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRSL---------- 296
W++ K + F S + ++ +KL E+ +KE G++ + S
Sbjct: 483 PGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAK 542
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ AVA LIS P P V K++ +C H+A +F+ + R+++V+D
Sbjct: 543 ERILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSR 602
Query: 352 FHHFKDGKCSCKDAY 366
FHHF +G+CSC D +
Sbjct: 603 FHHFVNGRCSCGDYW 617
>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 591
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 187/413 (45%), Gaps = 59/413 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQL---CCGFIDSYSICDILNSCLNPILLNVGTQA 68
+ WN+L ++ K V L ++++ C D + L +C N L+ G Q
Sbjct: 180 VSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQV 239
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
++ + GL + N L+++ SRCG +D A F E+N +SWT +IS +G
Sbjct: 240 HDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFG 299
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE-VYHIEPSEEHYS 187
EA++ F + S T L A + GLV E F M + I+P+ HY
Sbjct: 300 KEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYG 359
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL-- 245
+V+ LGRA + ++ IK + K IWRTLL + RVHGD++L + + L+EL
Sbjct: 360 CVVDLLGRARLLDKAYSLIKSM-EMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKA 418
Query: 246 -DPGMYV---------GCW-----------------------IEIQNKIYEFVSNE---E 269
+ G YV G W IE+Q ++EF+ ++
Sbjct: 419 EEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHP 478
Query: 270 LTSEVSDKLAEIEENMKELGFVLNRS----------------LYQTKMKAVALGLISFPH 313
E+ LAEI + +K G+V + Y ++ A+A G++ P
Sbjct: 479 RKEEIYKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPP 538
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G RV K++ C H+ +F+S + +R ++V+D FHHFK G CSC D +
Sbjct: 539 GTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
Length = 922
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 175/356 (49%), Gaps = 55/356 (15%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
+G Q K G+ S V N LI++ +CG D + F E++ +W II+
Sbjct: 569 IGQQIHTVAIKLGMDSELIVANALISMYFKCGCADSRRI-FDLMEERDIFTWNTIITGYA 627
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
HG EA+ +++ + N TF L A + GLV E ++ F SM + Y + P
Sbjct: 628 QHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLP 687
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
EHY+ MV+ LGR G + +FI + P + +IW LL + ++H + ++ K A +KL
Sbjct: 688 EHYACMVDLLGRTGDVQGAEQFIYDM-PIEPDTVIWSALLGACKIHKNAEIGKRAAEKLF 746
Query: 244 ELDP---GMYV-------------------------------GC-WIEIQNKIYEFVSNE 268
++P G YV GC W +I++K++ FV+ +
Sbjct: 747 RIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGD 806
Query: 269 ELTSEVSDKLAEIEE---NMKELGFVLNRS---------------LYQTKMKAVALGLIS 310
+ ++ + +A +EE +K G+V + LY ++ AVA L++
Sbjct: 807 KQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLA 866
Query: 311 FPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P GMP +++K++ +CG H+ +F+S + +R++ ++D FHHF++G CSC+D +
Sbjct: 867 TPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+R + A LI ++CG+IDDA + F+ PE +SW +I+ + +G +EA +
Sbjct: 315 ERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKE 374
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF 170
LF +R N ++ + YA G EA L
Sbjct: 375 LFDKMPFR----NTISWAGMIAGYAQNGRSEEALGLL 407
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 93 RCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRS 152
R G++ +A F + P ++ ++W +ISA ++G P A DL+ + N T
Sbjct: 46 RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYD----AISGGNMRTGAI 101
Query: 153 ALKAYALMGLVGEAYRLFLSMEE 175
L Y +G V EA R+F M E
Sbjct: 102 LLSGYGRLGRVLEARRVFDGMLE 124
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
S+ I +C N + L GTQ + K G + N LI + +C ++ A F
Sbjct: 421 SLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRM 480
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
K+ +SW ++A V + EA + F + S + ++ + + AYA EA
Sbjct: 481 VTKDIVSWNSFLAALVQNDLLDEARNTFDN----MLSRDDVSWTTIISAYAHAEQSNEAM 536
Query: 168 RLFLSM 173
F +M
Sbjct: 537 GAFKTM 542
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 113/413 (27%), Positives = 188/413 (45%), Gaps = 64/413 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W++++ K ++ EL +Q + + ++ SC + L +G +A Y
Sbjct: 211 VTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDY 270
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + + +G L+++ +RCG ID A F P +++LSWT +I+ HG+ +A
Sbjct: 271 ILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKA 330
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+ F + + TF + L A + GLV LF SM+ Y IEP EHY MV+
Sbjct: 331 LEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVD 390
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG E +F+ + P K IW LL + R+H + ++A+ A L+EL P G
Sbjct: 391 LLGRAGKLAEAEKFVNEM-PMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSG 449
Query: 249 MYV---------GCWIEIQN-----------------------KIYEFVSNEELTSEVS- 275
YV W ++N K+++F ++ E+
Sbjct: 450 YYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQQ 509
Query: 276 ----------------------DKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPH 313
D L +I+E KE N + K+ A+A ++
Sbjct: 510 IERMWEEILGKIRLAGYTGNNDDALFDIDEEEKE----SNIHRHSEKL-AIAYAIMRTKG 564
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P R++K++ +C H+A + +S + EREL+V+D FHHFK G CSC D +
Sbjct: 565 HDPIRIVKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACSCMDYW 617
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 110/410 (26%), Positives = 194/410 (47%), Gaps = 57/410 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ + +E E E +Q + + +++SC + L +G +A Y
Sbjct: 215 VTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEY 274
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + L + +G ++++ +RCG ++ A + F+ PEK+ L WT +I+ HG+ +A
Sbjct: 275 VMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKA 334
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L F + + TF + L A + G+V +F SM+ + +EP EHY MV+
Sbjct: 335 LWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVD 394
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG + +F+ + P K IWR LL + R+H ++++ + LLE+ P G
Sbjct: 395 LLGRAGKLRKAEKFVLKM-PVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYSG 453
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNEELTSEVSD 276
YV W IEI K++EF ++ E+ +
Sbjct: 454 HYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTHPEI-E 512
Query: 277 KLAEIEEN-----MKELGFVLNR--------------SLYQTKMK-AVALGLISFPHGMP 316
K+ I E+ +K G+V N +L++ K A+A G++ P
Sbjct: 513 KIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLAIAYGIMKIRAPTP 572
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C H+A + +S + E EL+V+D FHHFK+G CSC D +
Sbjct: 573 IRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCMDYW 622
>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
Length = 922
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 175/356 (49%), Gaps = 55/356 (15%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
+G Q K G+ S V N LI++ +CG D + F E++ +W II+
Sbjct: 569 IGQQIHTVAIKLGMDSELIVANALISMYFKCGCADSRRI-FDLMEERDIFTWNTIITGYA 627
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
HG EA+ +++ + N TF L A + GLV E ++ F SM + Y + P
Sbjct: 628 QHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLP 687
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
EHY+ MV+ LGR G + +FI + P + +IW LL + ++H + ++ K A +KL
Sbjct: 688 EHYACMVDLLGRTGDVQGAEQFIYDM-PIEPDTVIWSALLGACKIHKNAEIGKRAAEKLF 746
Query: 244 ELDP---GMYV-------------------------------GC-WIEIQNKIYEFVSNE 268
++P G YV GC W +I++K++ FV+ +
Sbjct: 747 RIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGD 806
Query: 269 ELTSEVSDKLAEIEE---NMKELGFVLNRS---------------LYQTKMKAVALGLIS 310
+ ++ + +A +EE +K G+V + LY ++ AVA L++
Sbjct: 807 KQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLA 866
Query: 311 FPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P GMP +++K++ +CG H+ +F+S + +R++ ++D FHHF++G CSC+D +
Sbjct: 867 TPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+R + A LI ++CG+IDDA + F+ PE +SW +I+ + +G +EA +
Sbjct: 315 ERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKE 374
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF 170
LF +R N ++ + YA G EA L
Sbjct: 375 LFDKMPFR----NTISWAGMIAGYAQNGRSEEALGLL 407
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 93 RCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRS 152
R G++ +A F + P ++ ++W +ISA ++G P A DL+ + N T
Sbjct: 46 RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYD----AISGGNMRTGAI 101
Query: 153 ALKAYALMGLVGEAYRLFLSMEE 175
L Y +G V EA R+F M E
Sbjct: 102 LLSGYGRLGRVLEARRVFDGMLE 124
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
S+ I +C N + L GTQ + K G + N LI + +C ++ A F
Sbjct: 421 SLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRM 480
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
K+ +SW ++A V + EA + F + S + ++ + + AYA EA
Sbjct: 481 VTKDIVSWNSFLAALVQNDLLDEARNTFDN----MLSRDDVSWTTIISAYAHAEQSNEAM 536
Query: 168 RLFLSM 173
F +M
Sbjct: 537 GAFKTM 542
>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 698
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 170/375 (45%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ ++ C LL G Q A + K LI VG+ L+++ +CG I + F
Sbjct: 325 NEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLF 384
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ ++W +I+ HGH EA+ F + N F S L A + GLV
Sbjct: 385 NEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVD 444
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F SM+E + IEP EEHYS +++ GRAG +E +FI + P K W +LL
Sbjct: 445 EGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEM-PIKPNAYGWCSLLG 503
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMYVG---------------------- 252
+ R+ G +L + A L++L+P G+Y
Sbjct: 504 ACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKL 563
Query: 253 ---CWIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRSL---------- 296
W++ K + F S + ++ +KL E+ +KE G++ + S
Sbjct: 564 PGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAK 623
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ AVA LIS P P V K++ +C H+A +F+ + R+++V+D
Sbjct: 624 ERILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSR 683
Query: 352 FHHFKDGKCSCKDAY 366
FHHF +G+CSC D +
Sbjct: 684 FHHFVNGRCSCGDYW 698
>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
Length = 855
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 180/373 (48%), Gaps = 55/373 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA-VGNCLININSRCGKIDDADLA 103
+++++ L +C L +G Q AY + S VGNCLI++ S+ G ID A
Sbjct: 481 NAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAV 540
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F + +N +SWT +++ HG EAL LF Q +++ TF L A + G+V
Sbjct: 541 FDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMV 600
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ F M + + I P EHY+ MV+ LGRAG E +E IK + + ++W LL
Sbjct: 601 DQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNM-SMEPTAVVWVALL 659
Query: 224 LSSRVHGDMKLAKYALDKLLEL---DPGMYV----------------------------- 251
+SR+H +++L +YA KL EL + G Y
Sbjct: 660 SASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRK 719
Query: 252 --GC-WIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVLNRS---------- 295
GC WI+ + F + + ++ + L ++ + +K++G+V S
Sbjct: 720 RPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTSFALHDVDDEE 779
Query: 296 ----LYQTKMK-AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
L++ K AVA G+++ G P R+ K++ +CG HSA ++S II+ E+V++D
Sbjct: 780 KGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRICGDCHSALTYISMIIDHEIVLRDSS 839
Query: 351 SFHHFKDGKCSCK 363
FHHFK G CSC+
Sbjct: 840 RFHHFKKGSCSCR 852
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+ ++ +IL +C + L G Q + + GL+ VGN L+++ ++C K+++A+ F
Sbjct: 233 DAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVF 292
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ +K+ +SW +++ G AL LFK Q ++ T+ + + YA G
Sbjct: 293 EGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGF 352
Query: 165 EAYRLFLSMEEVYHIEPS 182
EA +F M ++Y +EP+
Sbjct: 353 EALDVFRQM-QLYGLEPN 369
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 3/124 (2%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN L++ +K + ++Q D Y+ +L +C L G A +
Sbjct: 95 WNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVC 154
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK---NSLSWTFIISARVNHGHPSE 130
GL S+ + N ++ + RCG +DDA F E+ + +SW I++A V G
Sbjct: 155 ANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRT 214
Query: 131 ALDL 134
AL +
Sbjct: 215 ALRI 218
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 13/162 (8%)
Query: 12 IPWNLLLKA-CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
I W+ ++ K +E + ++ ++QL + ++ +L+ C + L G Q A
Sbjct: 336 ITWSAVIAGYAQKGHGFEAL-DVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHA 394
Query: 71 YMTKRGLI-------SHPAVGNCLININSRCGKIDDADLAFKST--PEKNSLSWTFIISA 121
Y+ K L V N LI++ ++C A F S +KN ++WT +I
Sbjct: 395 YVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGG 454
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTF--RSALKAYALMG 161
HG ++AL LF + TS+ P F AL A A +G
Sbjct: 455 YAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLG 496
>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 900
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 113/412 (27%), Positives = 196/412 (47%), Gaps = 63/412 (15%)
Query: 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQ 69
+ WN ++ C + E L R+QL DS+++ I+ P L ++ Q
Sbjct: 493 TRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSII-----PALADISDPLQ 547
Query: 70 A-----YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
A Y + L V LI++ ++CG++ A F S +++ ++W +I +
Sbjct: 548 ARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGS 607
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
HG A++LF++ + N TTF S L A + GLV E F SM+E Y +EP E
Sbjct: 608 HGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGME 667
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
HY MV+ LGRAG E FI+ + P + ++ +L + ++H +++LA+ + ++ E
Sbjct: 668 HYGTMVDLLGRAGKLHEAWSFIQKM-PMEPGISVYGAMLGACKLHKNVELAEESAQRIFE 726
Query: 245 LDP--GMY----------VGCW-----------------------IEIQNKIYEFVS--- 266
L+P G+Y W ++++N+I+ F S
Sbjct: 727 LEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGST 786
Query: 267 NEELTSEVSDKLAEIEENMKELGFV------------LNRSLYQTKMK--AVALGLISFP 312
N + ++ +LA++ E +K +G+V + L T + A+A GLI
Sbjct: 787 NHQQAKDIYARLAKLIEEIKAVGYVPDTDSIHDVEDDVKAQLLNTHSEKLAIAYGLIRTA 846
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G ++ K++ +C H+A + +S + RE++++D FHHFKDGKCSC D
Sbjct: 847 PGTTIQIKKNLRVCKDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGD 898
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 1/160 (0%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCG-FIDSYSICDILNSCLNPILLNVGTQAQ 69
+ WN L+ + E ++ R+Q G D+ ++ +L +C + L +
Sbjct: 291 RVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVH 350
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
A+ + G V ++++ +CG +D A F ++NS+SW +I +G +
Sbjct: 351 AFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDAT 410
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
EAL LFK + + +AL A +G + E R+
Sbjct: 411 EALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRV 450
>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 174/373 (46%), Gaps = 53/373 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS + +L++C L+ G + G+ + + L+N+ SRCG + A F
Sbjct: 208 DSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVF 267
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
S E N + WT +IS HG+ EA+++F + R N TF + L A A GL+
Sbjct: 268 YSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLID 327
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E +F SM++ Y + P EH+ MV+ GR G+ E +F+KG+ +L P +W +L
Sbjct: 328 EGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVPAVWTAMLG 387
Query: 225 SSRVHGDMKLAKYALDKLLEL---DPGMYV------------------------------ 251
+ ++H + L + L+ +PG YV
Sbjct: 388 ACKMHKNFDLGVEVAENLINAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQ 447
Query: 252 --GCWIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGF--VLNRSL-------- 296
I++ N+ Y F ++ T+E+ L E+ K+ G+ V ++
Sbjct: 448 VGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLDELIWRCKDAGYAPVPESAMHELEGEER 507
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ AVA GL+ G+ R++K++ +C HSA +F+S ++ RE++V+D
Sbjct: 508 EYALRYHSEKLAVAFGLMKTGDGVTLRIVKNLRICEDCHSAIKFISAVMNREIIVRDKLR 567
Query: 352 FHHFKDGKCSCKD 364
FHHF++G CSC D
Sbjct: 568 FHHFREGSCSCSD 580
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 4/160 (2%)
Query: 6 LISDVEIPWNLLLKACIKAKD---YEMVHELLERIQLCCGFIDS-YSICDILNSCLNPIL 61
L V P + L + IKA + + L R L + S Y+ ++ +C + L
Sbjct: 64 LFRSVSDPDSFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSL 123
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L +GT +++ G S V LI ++ A F P+++ ++W +IS
Sbjct: 124 LCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISG 183
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+G +EA+++F + + TF S L A + +G
Sbjct: 184 YEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLG 223
>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Cucumis sativus]
Length = 602
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 114/422 (27%), Positives = 196/422 (46%), Gaps = 64/422 (15%)
Query: 4 CSLISDVE----IPWNLLLKACIKAKDYEMVHELLERIQ----LCCGFIDSYSICDILNS 55
C L +V + WN+L+ + K L E +Q LC D + +L +
Sbjct: 182 CKLFDEVPQKDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCQP--DKVTCLLLLQA 239
Query: 56 CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSW 115
C + L G + Y+ + G + + N LI++ SRCG++D A F EKN +SW
Sbjct: 240 CADLNALEFGERIHGYIQQHGYNTESNLCNSLISMYSRCGRMDKAYEVFDKMTEKNVVSW 299
Query: 116 TFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175
+ +IS +GH EA++ F + Q TF + L A + GLV E F M +
Sbjct: 300 SAMISGLSMNGHGREAIEAFWEMQKNGVEPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQ 359
Query: 176 VYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLA 235
+ I P+ HY +V+ LGRAGM ++ E I + + +WRTLL + R+HG L
Sbjct: 360 EFMIAPNVHHYGCIVDLLGRAGMLDQAYELIMSM-EVRPDATMWRTLLGACRIHGHGNLG 418
Query: 236 KYALDKLLEL---DPGMYV---------GCW-----------------------IEIQNK 260
+ ++ L+EL + G YV G W IE+
Sbjct: 419 ERIVEHLIELKSQEAGDYVLLLNIYSSAGNWDKVTELRKLMKEKGIYTTPCCTTIELNGV 478
Query: 261 IYEFVSNE---ELTSEVSDKLAEIEENMKELGF--VLNRSLYQTKMK------------- 302
+++F ++ + ++ +L EI + +K G+ ++ L++ + K
Sbjct: 479 VHQFAVDDISHPMKDKIYKQLDEINKQLKIAGYEAEMSSELHRLEPKDKGYALSNHSEKL 538
Query: 303 AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
A+A G+++ P G R+ ++ C H+ +++S++ R++VV+D FHHF++G+CSC
Sbjct: 539 AIAFGVLATPPGRTIRIANNIRTCMDCHNFAKYISSVYNRKVVVRDRSRFHHFQEGRCSC 598
Query: 363 KD 364
D
Sbjct: 599 ND 600
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%)
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
+ SC+ + L G Q A + G + + ++++ S CGK ++A F P+K+
Sbjct: 134 VKSCIKLLSLLFGIQIHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDV 193
Query: 113 LSWTFIISARVNHGHPSEALDLFKDKQ 139
++W +IS + +AL LF+ Q
Sbjct: 194 VAWNVLISCLTRNKRTRDALGLFEIMQ 220
>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 196/408 (48%), Gaps = 57/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGTQAQ 69
+ W +L+ + + EL ++ F+ ++++I L +C L G Q
Sbjct: 462 VTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIH 521
Query: 70 AYMTKRGLISHPA-VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
AY+ + S V NCLI++ S+ G +D A + F + ++N +SWT +++ HG
Sbjct: 522 AYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRG 581
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
EAL +F + Q + TF L A + G+V + F M + + + P EHY+
Sbjct: 582 EEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYAC 641
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248
MV+ L RAG +E +E I+G+ P K P +W LL + RV+ +++L +YA ++LLEL+ G
Sbjct: 642 MVDLLSRAGRLDEAMELIRGM-PMKPTPAVWVALLSACRVYANVELGEYAANQLLELESG 700
Query: 249 ----------MYV------------------------GC-WIEIQNKIYEFVSNE---EL 270
+Y GC W++ + F + + +
Sbjct: 701 NDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPM 760
Query: 271 TSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGM 315
+ ++ D L ++ + +K LG+V + ++ A+A G+++ G
Sbjct: 761 SQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGA 820
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCK 363
P R+ K++ CG HSA ++S IIE E++V+D FHHFK+G CSC+
Sbjct: 821 PIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCR 868
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 81/163 (49%), Gaps = 1/163 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ A ++ D ++ ER+ G D+ S+ ++L +C + + G Q
Sbjct: 215 VSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHG 274
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y + GL VGN ++++ ++CG +++A+ F+ K+ +SW +++ G +
Sbjct: 275 YALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDD 334
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSM 173
AL LF+ + +N T+ + + YA GL EA +F M
Sbjct: 335 ALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQM 377
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN L++ + E V +L R+Q D Y+ +L +C G A +
Sbjct: 113 WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 172
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK---NSLSWTFIISARVNHGHPSE 130
G + VGN L+++ RCG ++A F E+ + +SW I++A + G
Sbjct: 173 ASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIR 232
Query: 131 ALDLFK 136
A+ +F+
Sbjct: 233 AMKMFE 238
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNS--LSWTFIISARVNHGHPSEALDLFKD--KQW 140
N LI++ S+C A F P K+ ++WT +I HG +EAL+LF +
Sbjct: 432 NALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPD 491
Query: 141 RYTSMNPTTFRSALKAYALMG 161
+ N T AL A A +G
Sbjct: 492 NFVMPNAFTISCALMACARLG 512
>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 748
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 116/409 (28%), Positives = 187/409 (45%), Gaps = 56/409 (13%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ W ++ +C + KD E + EL +Q ++ +I ++ +C N L G +
Sbjct: 342 VTWTSIIASCSQNGKDLEAL-ELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHC 400
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ +RG+ VG+ LI++ ++CG+I A F N +SW ++ HG E
Sbjct: 401 FSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKE 460
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
+++F + TF L A A GL E +R + SM E + IEP EHY+ +V
Sbjct: 461 TMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLV 520
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DP 247
L R G EE IK + P + +W LL S RVH ++ L + A +KL L +P
Sbjct: 521 TLLSRVGKLEEAYSIIKEM-PFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNP 579
Query: 248 GMYV--------------------------------GCWIEIQNKIYEFVSNEELTSEVS 275
G Y+ WIE+ +K++ ++ ++ ++
Sbjct: 580 GNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMK 639
Query: 276 D---KLAEIEENMKELG------FVLNRSLYQTKMK---------AVALGLISFPHGMPT 317
D KL ++ MK+ G FVL Q K + AV LGL++ G P
Sbjct: 640 DILEKLDKLNMQMKKSGYLPKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPL 699
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+VIK++ +C H+ + +S + RE+ V+D FHHFKDG CSC D +
Sbjct: 700 QVIKNLRICDDCHAVIKVISRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 1/150 (0%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D++ + + SC + L+ G Q A+ G ++ V + L ++ +C +I DA F
Sbjct: 103 DAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLF 162
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P+++ + W+ +I+ G EA +LF + + N ++ L + G
Sbjct: 163 DRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYD 222
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALG 194
EA +F M V P S ++ A+G
Sbjct: 223 EAVGMF-RMMLVQGFWPDGSTVSCVLPAVG 251
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 7/186 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNS--CLNPILLNVGTQA 68
+ WN +L Y+ + R+ L GF D ++ +L + CL ++ VG Q
Sbjct: 206 VSWNGMLAGFGNNGFYDEAVGMF-RMMLVQGFWPDGSTVSCVLPAVGCLEDVV--VGAQV 262
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
Y+ K+GL S V + ++++ +CG + + F E S ++ +G
Sbjct: 263 HGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMV 322
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
AL++F + + +N T+ S + + + G EA LF M + Y +EP+
Sbjct: 323 DTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDM-QAYGVEPNAVTIPS 381
Query: 189 MVEALG 194
++ A G
Sbjct: 382 LIPACG 387
>gi|125589603|gb|EAZ29953.1| hypothetical protein OsJ_14007 [Oryza sativa Japonica Group]
Length = 504
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 174/346 (50%), Gaps = 33/346 (9%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + ++ +C NP LL + + + + V N ++ + ++C ++ A F
Sbjct: 164 DPQAFYELAAACSNPKLLEELRKIHDFFLRSPFRADLQVNNKMLEMYAKCAAMNHARRTF 223
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGL 162
P++N SW +I +G AL LF++ + +Y + PT TF L A A
Sbjct: 224 DHMPDRNMDSWHIMIDGYAVNGLGDVALQLFEEMKTKY-GIAPTAHTFTLVLNACANSEA 282
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
+ EA+ F +M + IEP EHY ++E LG++G E +E+I+ + P + +W +L
Sbjct: 283 IEEAFLYFDAMSRDHGIEPGVEHYVGIIEVLGKSGHLNEAVEYIEKL-PFEPTDTVWESL 341
Query: 223 LLSSRVHGDMKLAKYALDKLLELDPG-------------MYVGC-WIEIQNKIYEF---- 264
L +R++GD+ L A + L+ LDP +G ++ +NK+ E+
Sbjct: 342 LNLARMNGDIDLEDRAEELLVSLDPTKVNPKKLPTPPPKRRLGINMLDGRNKLVEYRLPP 401
Query: 265 ------VSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPHGMPTR 318
V+ + + L +I++ KE LY ++ A+A GLIS P P R
Sbjct: 402 KIEKKVVNEQRYVPDTRYVLHDIDQEAKEQAL-----LYHSERLAIAYGLISTPARTPLR 456
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+IK++ +CG H+A + MS I+ REL+V+D FHHFKDGKCSC D
Sbjct: 457 IIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGD 502
>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
Length = 847
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 170/375 (45%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ ++ C LL G Q A + K LI VG+ L+++ +CG I + F
Sbjct: 474 NEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLF 533
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ ++W +I+ HGH EA+ F + N F S L A + GLV
Sbjct: 534 NEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVD 593
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F SM+E + IEP EEHYS +++ GRAG +E +FI + P K W +LL
Sbjct: 594 EGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEM-PIKPNAYGWCSLLG 652
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMYVG---------------------- 252
+ R+ G +L + A L++L+P G+Y
Sbjct: 653 ACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKL 712
Query: 253 ---CWIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRSL---------- 296
W++ K + F S + ++ +KL E+ +KE G++ + S
Sbjct: 713 PGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAK 772
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ AVA LIS P P V K++ +C H+A +F+ + R+++V+D
Sbjct: 773 ERILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSR 832
Query: 352 FHHFKDGKCSCKDAY 366
FHHF +G+CSC D +
Sbjct: 833 FHHFVNGRCSCGDYW 847
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 115/378 (30%), Positives = 181/378 (47%), Gaps = 63/378 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ L++C L G ++ + + V LI++ S+CG +++A L F
Sbjct: 256 DEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVF 315
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGL 162
TP K+ ++W +I+ HG+ +AL LF + Q T + PT TF L+A A GL
Sbjct: 316 NDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQG-ITGLQPTDITFIGTLQACAHAGL 374
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V E ++F SM + Y I+P EHY +V LGRAG + E IK + + ++W ++
Sbjct: 375 VNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNM-NMEADSVLWSSV 433
Query: 223 LLSSRVHGDMKLAK-----------------------YAL---------------DKLLE 244
L S ++HG+ L K YAL +K +
Sbjct: 434 LGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIV 493
Query: 245 LDPGMYVGCWIEIQNKIYEFVSN--EELTS-EVSDKLAEIEENMKELGFVLN-------- 293
+PG+ IEI NK++EF + E L S E+ L ++ E +K G+V N
Sbjct: 494 KEPGIST---IEIDNKVHEFRAGDREHLKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDL 550
Query: 294 ------RSL-YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVV 346
RSL ++ A+A GLIS G P ++ K++ +C H+ + +S I R++V+
Sbjct: 551 EETEKERSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVM 610
Query: 347 KDPGSFHHFKDGKCSCKD 364
+D FHHF DG CSC D
Sbjct: 611 RDRNRFHHFSDGSCSCDD 628
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 22/141 (15%)
Query: 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQL------CCGFIDSYSIC-DILNS 55
L S I+ E ++ +LK+C K +++H + + L G +D Y+ D++++
Sbjct: 120 LSSQINPNEFTFSSILKSC-STKSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSA 178
Query: 56 CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSW 115
+ M +R L+S A+ C ++ G ++ A F E++ +SW
Sbjct: 179 ----------QKVFDRMPERSLVSSTAMITCY----AKQGNVEAARALFDRMCERDIVSW 224
Query: 116 TFIISARVNHGHPSEALDLFK 136
+I HG PS+AL LF+
Sbjct: 225 NVMIDGYSQHGFPSDALMLFQ 245
>gi|356497955|ref|XP_003517821.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15690-like [Glycine max]
Length = 452
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 116/394 (29%), Positives = 182/394 (46%), Gaps = 37/394 (9%)
Query: 1 LKLCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSI-CDILNSCLNP 59
L+L + +P N+ L + + + + V EL+ + G + Y + +LN C +
Sbjct: 64 LQLDHQNQNAPLPLNVDLVSLCEEGNLDQVLELMGQ-----GAVADYRVYLALLNLCEHT 118
Query: 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
L G + ++ + + N LI + +CG + DA F PE+N SW +I
Sbjct: 119 RSLESGKRVHEFLRRSTFRRDVELSNRLIGMYCKCGSVKDARRVFDQIPERNISSWHLMI 178
Query: 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179
+G + L +F+ + + TF L A A V E + F SM+E + I
Sbjct: 179 GGYAANGLGCDGLLVFQQMKQAGVPPDGETFELVLAACAQAEAVEEGFLHFESMKE-HGI 237
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239
PS EHY ++ LG G E EFI+ I P +L W +L ++ HGD+ L +A
Sbjct: 238 VPSMEHYLEVINILGNTGQLNEAEEFIEKI-PIELGVEAWESLRNFAQKHGDLDLEDHAE 296
Query: 240 DKLLELDPGMYVG--------------CWIEIQNKIYEFVSNEELTSEVSDKLAEIEENM 285
+ L LDP V +E +N++ E+ + E +KL + M
Sbjct: 297 EVLTCLDPSKAVADKLPPPPRKKQSDMNMLEEKNRVTEYRYSIPYKEEAHEKLGGLSGQM 356
Query: 286 KELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSH 330
+E G+V + Y ++ A+A GLIS P R+IK++ +CG H
Sbjct: 357 REAGYVPDTRYVLHDIDEEEKEKALQYHSERLAIAYGLISTPPRTTLRIIKNLRICGDCH 416
Query: 331 SACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+A + MS I+ REL+V+D FHHFKDGKCSC D
Sbjct: 417 NAIKIMSKIVGRELIVRDNKRFHHFKDGKCSCGD 450
>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
Length = 659
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 193/408 (47%), Gaps = 55/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN++++ +K +L +++ C D+ + +L +C + L +G + Y
Sbjct: 254 ISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEY 313
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K+ L + + N LI++ +RCG +DDA F ++ SWT +ISA G A
Sbjct: 314 VEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNA 373
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF + + + F + L A + GL+ E F M + Y I P EHY+ +V+
Sbjct: 374 VALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVD 433
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG +E IK + P + +W TLL S RV +M + A D LL+L P G
Sbjct: 434 LLGRAGRVDEAYNIIKQM-PIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSG 492
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNEE---LTSE 273
YV G W +E+ N+++ F++ + + E
Sbjct: 493 YYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKE 552
Query: 274 VSDKLAEIEENMKELGFV--LNRSLYQTKMK-------------AVALGLISFPHGMPTR 318
+ ++L + MKELG+V + +L+ + + A+ L++ R
Sbjct: 553 IYEELGVLVAKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLN-TQEYQIR 611
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +CG H A + +S I+ERE++V+D FHHFKDG CSC D +
Sbjct: 612 ITKNLRVCGDCHIAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659
>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g01510, mitochondrial; Flags: Precursor
gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 584
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 192/408 (47%), Gaps = 56/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L C++ + + E ++ DS+++ +L++C L +G +
Sbjct: 176 VAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDR 235
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + + V N ++++ +CG + A + F+ ++N +SW+ +I +G EA
Sbjct: 236 ARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREA 295
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEV--YHIEPSEEHYSIM 189
L LF Q N TF L A + GLV E R F M + ++EP +EHY+ M
Sbjct: 296 LTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACM 355
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
V+ LGR+G+ EE EFIK + P + IW LL + VH DM L + D L+E P
Sbjct: 356 VDLLGRSGLLEEAYEFIKKM-PVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDI 414
Query: 248 GMY----------VGCW-----------------------IEIQNKIYEFVSNEE---LT 271
G Y G W +E + KI+ F ++ +
Sbjct: 415 GSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQS 474
Query: 272 SEVSDKLAEIEENMKELGFVLNR--------------SL-YQTKMKAVALGLISFPHGMP 316
+ +KL EI + ++++G+V + SL + ++ A+A GLI G P
Sbjct: 475 KAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHP 534
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
RV+K++ C H+ +F+S++ E++++D FHHF++G CSCK+
Sbjct: 535 IRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKE 582
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 189/410 (46%), Gaps = 62/410 (15%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+++ + L R+ + ++ +L++C L G +Y+
Sbjct: 158 WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIE 217
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
G+ + VG L+++ S+CG ++DA L F +K+ ++W +I HG EAL
Sbjct: 218 NNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQ 277
Query: 134 LFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LFK ++PT TF L A G V E + +F M++ Y IEP EHY MV
Sbjct: 278 LFKSMC--RMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVN 335
Query: 192 ALGRAGMFEEVLEFIKG--IVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE---LD 246
LGRAG E+ E +K I P P++W TLL + R+HG + L + ++ L++ +
Sbjct: 336 LLGRAGHVEQAYELVKNMNIEPD---PVLWGTLLGACRLHGKIALGEKIVELLVDQNLAN 392
Query: 247 PGMY---------VGCW-----------------------IEIQNKIYEFVS---NEELT 271
G Y VG W IE+ NK++EF++ N
Sbjct: 393 SGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKR 452
Query: 272 SEVSDKLAEIEENMKELGF------VLN--------RSL-YQTKMKAVALGLISFPHGMP 316
E+ L EI +K G+ VL+ RSL ++ A+A GLI+ G
Sbjct: 453 KEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTT 512
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+++K++ +C H + +S I R++VV+D FHHF +G CSC D +
Sbjct: 513 IKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 562
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 7/159 (4%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M ++ L+S A+ C ++ G++D A + F E++ + W +I +G P+EA
Sbjct: 119 MPEKSLVSLTAMLTCY----AKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEA 174
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF+ N T S L A +G + E+ R S E I+ + + +V+
Sbjct: 175 LVLFRRMLKAKAKPNEVTVLSVLSACGQLGAL-ESGRWVHSYIENNGIQFNVHVGTALVD 233
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
+ G E+ I + + W ++++ +HG
Sbjct: 234 MYSKCGSLEDARLVFDKIDDKDV--VAWNSMIVGYAMHG 270
>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
Length = 721
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 111/415 (26%), Positives = 189/415 (45%), Gaps = 66/415 (15%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
++ WN ++ + ++ D E L + + IL +C L +G Q
Sbjct: 314 DVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHC 373
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K AVGN LI++ ++CG I DA F ++ +SW II HG E
Sbjct: 374 LTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVE 433
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+ +F + + TF L A + G + E + F SM++ Y IEP EHY+ MV
Sbjct: 434 AIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMV 493
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+GR+G ++ ++FI+ I P + +IWR LL + +H D++L + + ++LEL+P
Sbjct: 494 WLMGRSGNLDQAVKFIEDI-PFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDE 552
Query: 248 -------GMYVGC-------------------------WIEIQNKIYEF----VSNEEL- 270
+Y WIE Q ++ F S+ +L
Sbjct: 553 ASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLK 612
Query: 271 ------------------TSEVSDKLAEIEENMKELGFVLNRSLY-QTKMKAVALGLISF 311
+ +++ L ++E++ KE R L+ ++ A+A GL+
Sbjct: 613 LINGMLEFLNMKTRKAGYSPQLNAVLLDVEDDEKE------RLLWLHSERLALAFGLVRM 666
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P G P R+IK++ +C HS + +S I+ R+++V+D FHHF++G CSC D +
Sbjct: 667 PAGCPIRIIKNLRICVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 66/147 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + + + E ++++ ++++ +L +CL + G
Sbjct: 113 VSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCS 172
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K VG L+ + +RCG DDA AF P+ + + W+F+IS G +A
Sbjct: 173 VLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKA 232
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L++F + + N TF S L+A A
Sbjct: 233 LEIFCQMRRAFVIPNQFTFSSVLQASA 259
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 67/150 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
IPW+ ++ ++ E E+ +++ + ++ +L + + L++ +
Sbjct: 214 IPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGH 273
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K GL + V N L+ ++CG I+ + F++ ++N +SW II + V G A
Sbjct: 274 ALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERA 333
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
L LF + T+ S L+A A +
Sbjct: 334 LSLFSNMLRYQVQATEVTYSSILRACATLA 363
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
+G + K G S+ +G LI+ S G + A F K+ +SWT +I++
Sbjct: 64 LGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYA 123
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
+ SEAL+ F Q R P F A A +GL
Sbjct: 124 ENDCFSEALEFF--SQMRVAGFKPNNFTFAGVLKACLGL 160
>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 109/408 (26%), Positives = 190/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ ++ + L +Q+ D +I ++++C +L+ Y
Sbjct: 46 VCWSAMISGYAESDKPQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMY 105
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL V N LI++ ++CG + A F+ +N +SWT +I+A HG S A
Sbjct: 106 VDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNA 165
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L F + N TF L A + GLV E R F SM ++I P EHY MV+
Sbjct: 166 LKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVD 225
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
GRA + + LE ++ +P +IW +L+ + ++HG+ +L ++A ++LEL+P G
Sbjct: 226 LFGRANLLRDALELVE-TMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDG 284
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFV---SNEELTSE 273
V GC IE+ N++YEFV + +
Sbjct: 285 ALVQLSNIYAKDRRWQDVGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADK 344
Query: 274 VSDKLAEIEENMKELGFVLN-RS--------------LYQTKMKAVALGLISFPHGMPTR 318
+ +KL E+ + +K +G+ N RS L+ ++ A+ GL+ G R
Sbjct: 345 IYEKLDEVVKELKLVGYTPNTRSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIR 404
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +C H+ + +S + E++V+D FHH+K G CSC D +
Sbjct: 405 IVKNLRVCEDCHTFIKLVSKVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 68 AQAYMTK---RGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
AQ TK R L+ V +I+ SR G+++DA L F EK+ + W+ +IS
Sbjct: 2 AQKLFTKISSRNLV----VLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAE 57
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
P EAL+LF + Q + T S + A A +G++ A
Sbjct: 58 SDKPQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRA 99
>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 178/375 (47%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ L +C L VG + Y++ G + +G L+++ ++CG I A F
Sbjct: 217 NDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVF 276
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
T K+ L+W+ +I HG +AL F + + + F + L A + G V
Sbjct: 277 VETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVD 336
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ F SM Y IEP+ +HY+++V+ LGRAG +E L FI+ + P +IW L
Sbjct: 337 QGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSM-PINPDFVIWGALFC 395
Query: 225 SSRVHGDMKLAKYALDKLLELD---PGMY---------VGCW------------------ 254
+ R H ++++A+ +KLL+L+ PG Y VG W
Sbjct: 396 ACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKD 455
Query: 255 -----IEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVLNRSLY--------- 297
IE++ +++ FV+ + E+S KL EI + K+ G++ +
Sbjct: 456 PGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEK 515
Query: 298 ------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
++ A+A GLIS G R++K++ +CG HS ++ S + RE++++D
Sbjct: 516 EDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKR 575
Query: 352 FHHFKDGKCSCKDAY 366
FHHFKDG CSC D +
Sbjct: 576 FHHFKDGTCSCGDYW 590
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 189/410 (46%), Gaps = 62/410 (15%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+++ + L R+ + ++ +L++C L G +Y+
Sbjct: 224 WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIE 283
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
G+ + VG L+++ S+CG ++DA L F +K+ ++W +I HG EAL
Sbjct: 284 NNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQ 343
Query: 134 LFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LFK ++PT TF L A G V E + +F M++ Y IEP EHY MV
Sbjct: 344 LFKSMC--RMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVN 401
Query: 192 ALGRAGMFEEVLEFIKG--IVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE---LD 246
LGRAG E+ E +K I P P++W TLL + R+HG + L + ++ L++ +
Sbjct: 402 LLGRAGHVEQAYELVKNMNIEPD---PVLWGTLLGACRLHGKIALGEKIVELLVDQNLAN 458
Query: 247 PGMY---------VGCW-----------------------IEIQNKIYEFVS---NEELT 271
G Y VG W IE+ NK++EF++ N
Sbjct: 459 SGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKR 518
Query: 272 SEVSDKLAEIEENMKELGF------VLN--------RSL-YQTKMKAVALGLISFPHGMP 316
E+ L EI +K G+ VL+ RSL ++ A+A GLI+ G
Sbjct: 519 KEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTT 578
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+++K++ +C H + +S I R++VV+D FHHF +G CSC D +
Sbjct: 579 IKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 7/159 (4%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M ++ L+S A+ C ++ G++D A + F E++ + W +I +G P+EA
Sbjct: 185 MPEKSLVSLTAMLTCY----AKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEA 240
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF+ N T S L A +G + E+ R S E I+ + + +V+
Sbjct: 241 LVLFRRMLKAKAKPNEVTVLSVLSACGQLGAL-ESGRWVHSYIENNGIQFNVHVGTALVD 299
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
+ G E+ I + + W ++++ +HG
Sbjct: 300 MYSKCGSLEDARLVFDKIDDKDV--VAWNSMIVGYAMHG 336
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 9/156 (5%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
++++ IL C PI +QA K G S V L+++ +R G + A F
Sbjct: 127 NAFTFSSILKLC--PIEPGKALHSQA--VKLGFDSDLYVRTGLLDVYARGGDVVSAQQLF 182
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ PEK+ +S T +++ HG A LF + R + + + Y G+
Sbjct: 183 DTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEER----DGVCWNVMIDGYTQNGMPN 238
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
EA LF M + +P+E ++ A G+ G E
Sbjct: 239 EALVLFRRMLKA-KAKPNEVTVLSVLSACGQLGALE 273
>gi|224070865|ref|XP_002303271.1| predicted protein [Populus trichocarpa]
gi|222840703|gb|EEE78250.1| predicted protein [Populus trichocarpa]
Length = 334
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 158/313 (50%), Gaps = 37/313 (11%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
+ N +I + +CG + DA F PE+N SW +I+ N+ E L+LF+ Q +
Sbjct: 26 LNNNVIKMYGKCGSMADARRVFDHMPERNMDSWHLMINEYANNDLGDEGLELFE--QMKK 83
Query: 143 TSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
+ PT TF + L A A V E + F M + I P+ EHY +++ LG++
Sbjct: 84 LGLEPTGETFHAVLSACASAEAVEEGFLYFEEMSREFGISPTLEHYLSIIDVLGKSAYLN 143
Query: 201 EVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGCWI----- 255
E +E+I+ + P + IW L +R HGD+ L +A + ++ LD V I
Sbjct: 144 EAVEYIEKL-PFEPTVEIWEALRKYARSHGDIDLEDHAEELIVSLDSSKAVANKIPTPPP 202
Query: 256 ---------EIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRS----------- 295
E +N++ EF N + +KL E+ E MK G+V +
Sbjct: 203 KKYNLISMLEGKNRVAEF-RNPTFYKD-DEKLKELRE-MKTGGYVPDTRYVLHDIDQEAK 259
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
LY ++ A+A GLIS P MP R+IK++ +CG H+A + MS I+ REL+V+D
Sbjct: 260 EQALLYHSERLAIAYGLISTPARMPLRIIKNLRVCGDCHNAIKIMSKIVGRELIVRDNKR 319
Query: 352 FHHFKDGKCSCKD 364
FHHFKDGKCSC D
Sbjct: 320 FHHFKDGKCSCGD 332
>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
Length = 1058
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 120/419 (28%), Positives = 201/419 (47%), Gaps = 75/419 (17%)
Query: 12 IPWNLLLKACI------KAKD--YEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLN 63
I WN ++ I +A D + M+H +I CC F SI ILN+C + L
Sbjct: 651 ISWNSMISGYIYNGNLQEAMDCVWLMIHS--GQIMDCCTF----SI--ILNACASVAALE 702
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G + A+ + L S V + L+++ S+CG++D A F S ++N SW +IS
Sbjct: 703 RGMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYA 762
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
HG +A+++F++ S + TF S L A + GLV F M + + I P
Sbjct: 763 RHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMPD-HGILPQI 821
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD---MKLAKYALD 240
EHYS +++ LGRAG +++ E+I+ + P + LIWRT+L++ R D + L + A
Sbjct: 822 EHYSCVIDLLGRAGKIDKIKEYIQRM-PIEPNALIWRTVLVACRQSKDGSNIDLGREASR 880
Query: 241 KLLELDP----------------GMYVGC-------------------WIEIQNKIYEFV 265
LLE++P GM+ W+ + + ++ F+
Sbjct: 881 VLLEIEPQNPVNYVLASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLNDGVHTFI 940
Query: 266 SNEEL---TSEVSDKLAEIEENMKELGFV---------------LNRSLYQTKMKAVALG 307
+ + T E+ +KL + +N++ G+V Y ++ A+A
Sbjct: 941 AGDRSHPNTKEIYEKLNFLIQNIRNAGYVPLTEYALYDLEEENKEELLSYHSEKLAIAFV 1000
Query: 308 LISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
L G P R++K++ +CG H A R++S +I R+++++D FHHFKDGKCSC D +
Sbjct: 1001 LTRSSSG-PIRIMKNLRVCGDCHIAFRYISQMISRQIILRDSIRFHHFKDGKCSCGDYW 1058
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 1/147 (0%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
I WN ++ A + + E ++ C ++++ L+SC LL G Q
Sbjct: 446 RISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHC 505
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP-S 129
K GL +V N L+ + CG + D F S E + +SW ++ + P S
Sbjct: 506 DAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPIS 565
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKA 156
E + +F + N TF + L A
Sbjct: 566 EIVKVFNNMMRGGLIPNKVTFINLLAA 592
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ KRGL + N L+N ++ ++ A F PE+N++SWT ++S V HG EA
Sbjct: 87 LIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGIAEEA 146
Query: 132 LDLFK 136
+F+
Sbjct: 147 FRVFR 151
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 62 LNVGTQAQAYMTKRGLIS-HPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L +G +M + GL AV N L+N+ ++CG I+ A F+ + +SW IIS
Sbjct: 395 LRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIIS 454
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
A +G+ EA+ + R + ++P+ F
Sbjct: 455 ALDQNGNCEEAVMHY--SLMRQSCISPSNF 482
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Query: 22 IKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLN--PILLNVGTQAQAYMTKRGLIS 79
I + + + +L +Q C S++ +L +C + P L Q ++K S
Sbjct: 142 IAEEAFRVFRAMLREVQAGCR-PTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYAS 200
Query: 80 HPAVGNCLININSRC--GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
+ V N LI++ C G A F TP ++ ++W ++S G + LFKD
Sbjct: 201 NTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKD 260
Query: 138 KQ 139
Q
Sbjct: 261 MQ 262
>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 695
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 170/375 (45%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ ++ C LL G Q A + K LIS V + L+++ +CG I + F
Sbjct: 322 NEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLF 381
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
K ++W I+ HGH EA+ F N TF S L A + GLV
Sbjct: 382 KEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVD 441
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F SM++ + IEP EHYS +++ GRAG +E +FI G +P K W +LL
Sbjct: 442 EGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFI-GEMPVKPNAYGWCSLLG 500
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMYVG---------------------- 252
+ R+ G+ +L + A D +++L+P G+Y
Sbjct: 501 ACRMRGNKELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIKKL 560
Query: 253 ---CWIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRSL---------- 296
W++ K + F S + ++ +KL E+ E +KE G+V +
Sbjct: 561 PGFSWVDSNKKTHVFGSEDWSHPQQEKIYEKLEELYERIKEEGYVPDTRFLPCNLEDTAK 620
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ AVA LIS P P V K++ +C HSA +F+S + R+++V+D
Sbjct: 621 QRILRYHSERIAVAFALISMPATKPIIVKKNLRICADCHSALKFISKVENRDIIVRDNSR 680
Query: 352 FHHFKDGKCSCKDAY 366
FHHF G CSC D +
Sbjct: 681 FHHFVKGGCSCGDYW 695
>gi|449438679|ref|XP_004137115.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15690-like [Cucumis sativus]
Length = 688
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 177/377 (46%), Gaps = 53/377 (14%)
Query: 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRG 76
LLK +KA D + H L E CG S+ +++ Y +
Sbjct: 334 LLKQGVKA-DVDCFHLLFE----LCGKSKSFDNAKVVHD---------------YFLQSS 373
Query: 77 LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
S + N ++ + RCG + DA F P+++ SW ++ ++G E L+LF+
Sbjct: 374 CRSDLQLNNEVLEMYGRCGSMSDARRVFDHMPDRSIDSWHLMMKGYADNGLGDEGLELFE 433
Query: 137 DKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA 196
+ + N TF + A A V E + F SM+ YHI P HY ++ LG
Sbjct: 434 NMKNLGLQPNSQTFLYVMSACASANAVEEGFLYFESMKNDYHITPDTNHYLGLLGILGEP 493
Query: 197 GMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGCWIE 256
G E E+++ + P + +W TL +R+HGD+ L YA + +++LDP V I
Sbjct: 494 GHIHEAFEYVEKL-PMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNKIS 552
Query: 257 I--------------QNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRS------- 295
+N+I EF N L + +KL ++ MKE G+V +
Sbjct: 553 TPPPKKRSAISMLDGKNRIVEF-RNPTLYKD-DEKLKALKA-MKEQGYVPDTRYVLHDID 609
Query: 296 --------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
LY ++ A+A GLIS P P R+IK++ +CG H+A + MS I+ REL+V+
Sbjct: 610 QEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVR 669
Query: 348 DPGSFHHFKDGKCSCKD 364
D FHHFKDGKCSC D
Sbjct: 670 DNKRFHHFKDGKCSCGD 686
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 196/408 (48%), Gaps = 57/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGTQAQ 69
+ W +L+ + + EL ++ F+ ++++I L +C L G Q
Sbjct: 443 VTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIH 502
Query: 70 AYMTKRGLISHPA-VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
AY+ + S V NCLI++ S+ G +D A + F + ++N +SWT +++ HG
Sbjct: 503 AYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRG 562
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
EAL +F + Q + TF L A + G+V + F M + + + P EHY+
Sbjct: 563 EEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYAC 622
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248
MV+ L RAG +E +E I+G+ P K P +W LL + RV+ +++L +YA ++LLEL+ G
Sbjct: 623 MVDLLSRAGRLDEAMELIRGM-PMKPTPAVWVALLSACRVYANVELGEYAANQLLELESG 681
Query: 249 ----------MYV------------------------GC-WIEIQNKIYEFVSNE---EL 270
+Y GC W++ + F + + +
Sbjct: 682 NDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPM 741
Query: 271 TSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGM 315
+ ++ D L ++ + +K LG+V + ++ A+A G+++ G
Sbjct: 742 SQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGA 801
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCK 363
P R+ K++ CG HSA ++S IIE E++V+D FHHFK+G CSC+
Sbjct: 802 PIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCR 849
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 81/164 (49%), Gaps = 1/164 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ A ++ D ++ ER+ G D+ S+ ++L +C + + G Q
Sbjct: 196 VSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHG 255
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y + GL VGN ++++ ++CG +++A+ F+ K+ +SW +++ G +
Sbjct: 256 YALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDD 315
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174
AL LF+ + +N T+ + + YA GL EA +F M
Sbjct: 316 ALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMR 359
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN L++ + E V +L R+Q D Y+ +L +C G A +
Sbjct: 94 WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 153
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK---NSLSWTFIISARVNHGHPSE 130
G + VGN L+++ RCG ++A F E+ + +SW I++A + G
Sbjct: 154 ASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIR 213
Query: 131 ALDLFK 136
A+ +F+
Sbjct: 214 AMKMFE 219
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 115/417 (27%), Positives = 195/417 (46%), Gaps = 69/417 (16%)
Query: 11 EIPWNLLL----KACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
+I WN ++ ++ + + E+ H ++ + + ++ ++ +L +C + L G
Sbjct: 1317 DISWNSMIAVYAQSGLSGEALEVFHGMVRHVGV---RYNAVTLSAVLLACAHAGALRAGK 1373
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ K L + VG +I++ +CG+++ A F EKN SWT +++ HG
Sbjct: 1374 CIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHG 1433
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
EALD+F N TF S L A + GLV E + F +M+ Y IEP EHY
Sbjct: 1434 RAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHY 1493
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLE 244
MV+ GRAG E IK + K+ P ++W +LL + R+H ++ L + A KL E
Sbjct: 1494 GCMVDLFGRAGCLNEAYNLIKRM---KMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFE 1550
Query: 245 LDP---GMYV---------GCWIEIQNKIYEFVSNEELTSE----------------VSD 276
LDP G YV G W +++ ++ + N +L V D
Sbjct: 1551 LDPDNCGYYVLLSNLYADAGRWADVE-RMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGD 1609
Query: 277 K-----------LAEIEENMKELGFVLNRS----------------LYQTKMKAVALGLI 309
K L ++ ++++G+V N + ++ K+ AVA G++
Sbjct: 1610 KEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKL-AVAFGVM 1668
Query: 310 SFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ G +IK++ +CG H+ + +S ++ R+ VV+D FHHFKDG CSC D +
Sbjct: 1669 NSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 91/198 (45%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ I+ + E EL +R+Q F + Y++ ++ +C +L +G Y
Sbjct: 223 VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDY 282
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + +G LI++ S+CG I DA F++ P K+ +W +I++ HG EA
Sbjct: 283 AIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEA 342
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+LF + + + TF L A + V E F M + Y I P EHY M E
Sbjct: 343 LNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTE 402
Query: 192 ALGRAGMFEEVLEFIKGI 209
R+ +E + K +
Sbjct: 403 LYARSNNLDEAFKSTKEV 420
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 111/273 (40%), Gaps = 55/273 (20%)
Query: 14 WNLLLKA-CIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAY 71
WNL+++A I + + +L + +C G D ++ ++ +C N + +++G
Sbjct: 93 WNLIIRANTINGLSEQAL--MLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGS 150
Query: 72 MTKRGLISHPAVGNCLININSRCG-------------------------------KIDDA 100
+ K G V N LI+ +CG + +A
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA 210
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
F P KN +SWT +I+ + + P EAL+LFK Q N T S +KA M
Sbjct: 211 RRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEM 270
Query: 161 GLVGEAYRLFLSMEEVYH-------IEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGK 213
G+ L++ H IE + +++ + G ++ +E + +P K
Sbjct: 271 GI--------LTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFE-TMPRK 321
Query: 214 LCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
P W +++ S VHG L + AL+ E++
Sbjct: 322 SLP-TWNSMITSLGVHG---LGQEALNLFSEME 350
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 36 RIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCG 95
R C ++CD+++ + + QA++ G + V + LI++ S+CG
Sbjct: 1142 RSSFPCTIKSCSALCDLVSGRM--------SHQQAFVF--GFETDLFVSSALIDMYSKCG 1191
Query: 96 KIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
++ DA F P +N +SWT +I+ V + AL LFKD
Sbjct: 1192 QLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKD 1233
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+DS + +L++C + ++ K+G VGN L++ ++CG+ +
Sbjct: 1249 LDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKV 1308
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
F EK+ +SW +I+ G EAL++F
Sbjct: 1309 FDWMEEKDDISWNSMIAVYAQSGLSGEALEVF 1340
>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Brachypodium distachyon]
Length = 669
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 110/376 (29%), Positives = 184/376 (48%), Gaps = 60/376 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
++ ++ IL +C + + G + + GL + VG ++++ S+CG+++ A AF
Sbjct: 296 NAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAF 355
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ EKN LSW+ +I+ HGH EALD+F + + N TF S L A + GL+
Sbjct: 356 QKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLD 415
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTL 222
+ + +M++ + IEP EHY MV+ LGRAG +E IK + K+ P IW L
Sbjct: 416 KGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEM---KVKPDAAIWGAL 472
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW---------------- 254
L + R+H +++LA+ + +L ELD G YV G W
Sbjct: 473 LSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVLVKTRGIE 532
Query: 255 -------IEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS--------- 295
+E++ + + F ++ E+ L ++ E M+E G+V N
Sbjct: 533 KPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSVLHDLDEE 592
Query: 296 -------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
++ K+ A+A L++ G VIK++ +C H+A + ++ I +RE++V+D
Sbjct: 593 EKASALHIHSEKL-AIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQREIIVRD 651
Query: 349 PGSFHHFKDGKCSCKD 364
FHHFKDG CSC D
Sbjct: 652 LQRFHHFKDGSCSCGD 667
>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
Length = 606
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 110/407 (27%), Positives = 190/407 (46%), Gaps = 56/407 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N ++ A +++ L +Q S ++ +L++C L +G Y
Sbjct: 200 VSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRWVHDY 259
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL S V LI++ ++CG ++DA F+ K+ +W+ +I A NHG+ EA
Sbjct: 260 VRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVMIVAYANHGYGREA 319
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF++ + + TF L A + GLV E + F M++ + I P +HY + +
Sbjct: 320 ISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDMKD-HGIVPGIKHYGCVTD 378
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
L R+G E +FI + P P++WRTLL + HGD +L K +++L+LD G
Sbjct: 379 LLARSGQLERAYKFIDEL-PINPTPILWRTLLSACGGHGDFELGKRVFERILKLDDSHGG 437
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNE---ELTSE 273
YV G W IEI N ++EF + + + E
Sbjct: 438 DYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDNTVHEFFAGDGRHPKSQE 497
Query: 274 VSDKLAEIEENMKELGFVLNRS----------------LYQTKMKAVALGLISFPHGMPT 317
+ E+ + +K +G+V N S Y ++ A+A GL++ G
Sbjct: 498 ARKMVDEVIDQLKLVGYVPNTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAPGATL 557
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
RV+K++ +C HS + +S + R ++++D FHHF++G CSC D
Sbjct: 558 RVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEEGICSCGD 604
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 53/117 (45%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+Y+ +L +C G QA A K G H V LIN+ + CG A + F
Sbjct: 132 DTYTFVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMF 191
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
T +S+ +I+A V P EAL LF++ Q + T S L A AL+G
Sbjct: 192 GGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLG 248
>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
Length = 684
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 188/408 (46%), Gaps = 53/408 (12%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
++ W+ L+ + ++E + E ++ I+S++ I +C N G QA A
Sbjct: 278 DVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHA 337
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K L+++ + +I + SRCG++D A F+S + ++++WT II+ G+ E
Sbjct: 338 DAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPE 397
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL LF+ Q N TF + L A + GLV E + SM Y + + +HY MV
Sbjct: 398 ALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMV 457
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMY 250
+ RAG +E LE I+ + P + W+ LL + ++++ + A + L +LDP
Sbjct: 458 DIYSRAGFLQEALELIRSM-PFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDT 516
Query: 251 VG-----------------------------------CWIEIQNKIYEFVSNEE---LTS 272
G WI ++ K++ F+ ++ T
Sbjct: 517 AGYILMFNLYASFGKWKEAANVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHPQTE 576
Query: 273 EVSDKLAEIEENM--KELGFV----LNRSLYQTKMK--------AVALGLISFPHGMPTR 318
E+ KL + +++ +E G + ++ SL + K + A+A GLIS P P
Sbjct: 577 EIYSKLEALNDSVIKEETGLLTEEDVSNSLPERKEQLLVHSERLALAFGLISTPSSAPVV 636
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V K++ C H + +S I RE+VV+D FHHFK G+CSC D +
Sbjct: 637 VFKNLRACKDCHDFGKQVSLITGREIVVRDSFRFHHFKLGECSCNDYW 684
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D Y +L +C LN G Q ++ K GL S +VG L++ +C ++ A A
Sbjct: 210 LDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKA 269
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
F+ E N +SW+ +I+ G EAL F+ + R +N T+ S +A
Sbjct: 270 FEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQA 322
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
L S LNP L +G Q ++ + GL S+ +V + N+ +CG ++ A+L F+ EKN
Sbjct: 117 FLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKN 176
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+++WT I+ +AL LF ++ F LKA A
Sbjct: 177 AVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACA 223
>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
chloroplastic [Vitis vinifera]
gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
Length = 880
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 107/363 (29%), Positives = 176/363 (48%), Gaps = 46/363 (12%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D +S+ L++ ++ G Q Y K GL S +V N L+++ +CG I DA +
Sbjct: 518 MDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRS 577
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM--G 161
F E +++SW +I ++GH S AL F+D R + P L YA G
Sbjct: 578 FLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDM--RLAGVEPDQITCLLVLYACSHGG 635
Query: 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221
LV F SM E + I P +HY +V+ LGRAG EE + I+ +P K LI++T
Sbjct: 636 LVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIE-TMPFKPDALIYKT 694
Query: 222 LLLSSRVHGDMKLAKYALDKLLEL---DPGMYV--------------------------- 251
LL + ++HG++ L ++ + LEL DP YV
Sbjct: 695 LLGACKLHGNIPLGEHMARQGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRMMRERGV 754
Query: 252 -----GCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKE-----LGFVLNRSL-YQTK 300
W+E +N ++ F + + ++ +IE + + + + NR+L + ++
Sbjct: 755 RKNPGQSWMEERNMVHLFTAGDTSHPQIGKIHEKIESLIAQFRNQGIWYQENRALAHHSE 814
Query: 301 MKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKC 360
AVA GLIS P P R+IK++ +C H ++ +++RE++V+D FH FK G+C
Sbjct: 815 KLAVAFGLISTPPKAPIRIIKNIRICRDCHDFIMNVTRLVDREIIVRDGNRFHSFKKGEC 874
Query: 361 SCK 363
SC+
Sbjct: 875 SCR 877
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 76/149 (51%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W +L+ A K ++E EL + + + + + +++ L SC N GT+ QA +T
Sbjct: 84 WTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVT 143
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G S+P +G+ LI+ S+CG +A F+ + +SWT ++S+ V G S+AL
Sbjct: 144 KSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQ 203
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGL 162
L+ + N TF L A + +GL
Sbjct: 204 LYHRMIQTGVAPNEFTFVKLLAASSFLGL 232
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGK-IDDADLA 103
++++ ILN+C + + L++G Q + + GL + +VGN L+++ +C I+DA A
Sbjct: 316 NNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRA 375
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
F+ N +SWT +I+ HG E++ +F Q N T + L A
Sbjct: 376 FRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGA 428
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 83/209 (39%), Gaps = 53/209 (25%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F +S S+ D + C++ ++ +G Q +++ N L+++ +C + +A
Sbjct: 25 FCNSRSVRDGI--CIHSPIIKMGFQEDMFLS-----------NNLLSLYGKCFGVAEARQ 71
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK-------------------------- 136
F P ++ SWT ++SA G+ EAL+LF
Sbjct: 72 LFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALRE 131
Query: 137 -DKQWRYTSM--------NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
+ R+ ++ NP + + Y+ G EAYR+F M + ++
Sbjct: 132 FNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVS-----WT 186
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCP 216
+MV + AG + + L+ ++ + P
Sbjct: 187 MMVSSFVEAGSWSQALQLYHRMIQTGVAP 215
>gi|297735282|emb|CBI17644.3| unnamed protein product [Vitis vinifera]
Length = 628
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 101/317 (31%), Positives = 162/317 (51%), Gaps = 27/317 (8%)
Query: 51 DILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK 110
D++++C + +L +G Q Y+ K G +G+ +I++ +CG ++DA L F ++
Sbjct: 338 DVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDR 397
Query: 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF 170
N + WT +IS HG EA+ LF+ + N +F L A + GL+ E + F
Sbjct: 398 NVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYF 457
Query: 171 LSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVH- 229
M EVY I P EH++ MV+ GRAG E+ EFI KL +WR+ L S R H
Sbjct: 458 RLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSS-VWRSFLSSYRSHP 516
Query: 230 GDMKLAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELG 289
D K+ Y LD+L+ ++ E + ++T + D E E+ LG
Sbjct: 517 QDTKIYSY-LDELI---------------GRLKEIGYSTDVTPVMQD--VEQEQRQVLLG 558
Query: 290 FVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
Y ++ A+A G+IS G P RV+K++ +C H+ ++ S ++ RE++++D
Sbjct: 559 -------YHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDI 611
Query: 350 GSFHHFKDGKCSCKDAY 366
FHHFK G CSC D +
Sbjct: 612 HRFHHFKHGHCSCADYW 628
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 84 GNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYT 143
GN L+N+ ++ ++ A F+ P+ + SWT +IS G ++ L LF Q +
Sbjct: 70 GNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGV 129
Query: 144 SMNPTTFRSALKA 156
N T LK+
Sbjct: 130 CPNQFTLSIVLKS 142
>gi|413950787|gb|AFW83436.1| hypothetical protein ZEAMMB73_311793 [Zea mays]
Length = 594
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 173/374 (46%), Gaps = 55/374 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
++ Y++ I+ C L +G Q A TK L + P V + L+++ S+CG ++ A
Sbjct: 221 VNDYTVSSIIRVCAAATLFELGAQVHARATKTALDASPFVSSSLVSVYSKCGLVECAYRV 280
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F PEKN W ++ A HGH + A + F + Q N TF L A + GLV
Sbjct: 281 FNEAPEKNLGIWNAVLIASAQHGHTAAAFERFMEMQKAGFQPNHITFLCLLTACSYAGLV 340
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E R F M++ Y IEP EHY+ MV+ LGR G+ +E L+ I+ + P + +W LL
Sbjct: 341 DEGKRYFSIMKD-YGIEPQAEHYASMVDLLGRVGLIKEALDLIESM-PMEPPESVWGALL 398
Query: 224 LSSRVHGDMKLAKYALDKLLELD----------------PGMYVGC-------------- 253
+S R+ D A A +L E G ++
Sbjct: 399 MSCRIFKDADTAAIAAKRLFETGSRSSGAHMLLSSTYAAAGRHIDAALARKAMRDAGVRK 458
Query: 254 -----WIEIQNKIYEFVSN---EELTSEVSDKLAEIEENMKELGFVLNRSL--------- 296
W+E +++ F SN + + E+ L + E M+ G+V + S
Sbjct: 459 ETGLSWLEAAGEVHTFASNCRRHQRSEEIYKVLENVGEKMEAAGYVADTSAVVKDVDGDE 518
Query: 297 ------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
Y ++ A+ LGL+ PHG+P RV+K++ +C H+A ++++ R +V++D
Sbjct: 519 KRATVRYHSERLAIGLGLLIVPHGVPIRVMKNLRVCDDCHNAIKYLTKCTGRVVVLRDNR 578
Query: 351 SFHHFKDGKCSCKD 364
FH F+ G CSC D
Sbjct: 579 RFHRFEGGVCSCGD 592
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
VG+ ++++ ++CG + DA F PE+N +SW+ +I + G A+ +F+
Sbjct: 159 VGSAIVDMYAKCGHLADARRLFDDMPERNVVSWSALICGYADAGMHPAAMGIFRLALEEA 218
Query: 143 TSMNPTTFRSALKAYALMGL 162
+N T S ++ A L
Sbjct: 219 VPVNDYTVSSIIRVCAAATL 238
>gi|115468046|ref|NP_001057622.1| Os06g0472300 [Oryza sativa Japonica Group]
gi|113595662|dbj|BAF19536.1| Os06g0472300, partial [Oryza sativa Japonica Group]
Length = 397
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 104/392 (26%), Positives = 184/392 (46%), Gaps = 64/392 (16%)
Query: 32 ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTK--RGLISHPAVGNCLIN 89
EL R++ + ++ +L +C + L VG Q A++ K + LI H N L++
Sbjct: 13 ELFMRMKEAGFLSNQGTLTSVLRACTGLVTLEVGRQVHAHVLKYDKDLILH----NALLD 68
Query: 90 INSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTT 149
+ +CG + DAD F P+++ +SW+ +IS +G EAL +F + N T
Sbjct: 69 MYCKCGSLQDADALFGRMPQRDVISWSTMISGLAQNGRSIEALKVFDMMKSEGPRPNHIT 128
Query: 150 FRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI 209
L A + GLV + + F SME+++ I+P EH + MV+ LGRAG ++ ++FI +
Sbjct: 129 MVGVLFACSHAGLVEDGWYYFSSMEKLFGIQPEREHCNCMVDLLGRAGKLDDAVKFIHEM 188
Query: 210 VPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLELDP----------GMYVG----- 252
P +IWRTLL + R+H + LA YA ++L L+P Y
Sbjct: 189 ---NFQPDSVIWRTLLGACRMHKNADLAAYAAKEILRLEPDDQGARILLSNTYADLRQWA 245
Query: 253 --------------------CWIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELG 289
WIE+ +++ F++ + + + +L+ + + LG
Sbjct: 246 DAEKSWKMMRDRGVKKDPGRSWIELGKQVHVFIAGDLSHPCSESIIQELSRLFSRVTNLG 305
Query: 290 FVLNRSL---------------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACR 334
+ Y ++ A+A G ++ G P R++K++ +CG H+ +
Sbjct: 306 YTPQTEFVLQDLATEQKEDLLKYHSEKLAIAFGTMNAMEGKPIRIMKNLRICGDCHAFAK 365
Query: 335 FMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+S + ++++DP FHHF+DG CSC D +
Sbjct: 366 LVSKSEGKVIIIRDPVRFHHFQDGVCSCNDYW 397
>gi|326515404|dbj|BAK03615.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 182/374 (48%), Gaps = 39/374 (10%)
Query: 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRG 76
L+ C + + E V ELLE+ D+ S ++ +C P LL + Y+ +
Sbjct: 176 LIALCREGRAKEAV-ELLEK----GARADAASFYELAGACSTPKLLEELRKVHDYLLRSP 230
Query: 77 LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
+ V N + + RCG + A F P+++ SW +I +G L LF+
Sbjct: 231 FRADLQVNNRFLEMYGRCGNMTHARRTFDHMPDRDMASWHLMIEGYAANGLGDAGLQLFE 290
Query: 137 DKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALG 194
+ + M PT TF L A A + EA+ F +M + IEP EHY ++E LG
Sbjct: 291 --EMKRCGMAPTARTFVLVLDACANSEAIEEAFLYFDAMSRDHGIEPGMEHYVGIIEVLG 348
Query: 195 RAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG------ 248
++G E +E+++ + P + +IW ++L +R++GD+ L + L+ LDP
Sbjct: 349 KSGHLNEAVEYVEKL-PFEPNAMIWESVLNLARMNGDIDLEDRVEELLVSLDPSKANPKK 407
Query: 249 -------MYVGC-WIEIQNKIYEF----------VSNEELTSEVSDKLAEIEENMKELGF 290
+G ++ +NK+ E+ V+ + + L +I++ KE
Sbjct: 408 LPTPPPKRRLGINMLDGRNKLGEYRLPPKIEKKVVNEQRYVPDTRYVLHDIDQEAKEQAL 467
Query: 291 VLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
LY ++ A+A GLIS P P R+IK++ +CG H+A + MS I+ REL+V+D
Sbjct: 468 -----LYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNK 522
Query: 351 SFHHFKDGKCSCKD 364
FHHFK+GKCSC D
Sbjct: 523 RFHHFKEGKCSCGD 536
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 111/416 (26%), Positives = 199/416 (47%), Gaps = 64/416 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGTQAQ 69
+ W ++ A +++ + + E ++CC I D S+ ++++C N +L+
Sbjct: 310 VCWTTMISAYVESDYPQEALRVFE--EMCCSGIKPDVVSMFSVISACANLGILDKAKWVH 367
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ + GL S ++ N LIN+ ++CG +D F+ P +N +SW+ +I+A HG S
Sbjct: 368 SCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEAS 427
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
+AL LF + N TF L + GLV E ++F SM + Y+I P EHY M
Sbjct: 428 DALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCM 487
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
V+ GRA + E LE I+ + P +IW +L+ + R+HG+++L K+A ++LEL+P
Sbjct: 488 VDLFGRANLLREALEVIESM-PVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDH 546
Query: 248 -GMYV---------GCWIEIQN-----------------------KIYEFV---SNEELT 271
G V W +++N K +EF+ + +
Sbjct: 547 DGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQS 606
Query: 272 SEVSDKLAEIEENMKELGFV---------------LNRSLYQTKMKAVALGLISFPHGMP 316
+E+ KL E+ +K G+V + L+ ++ A+ GL++
Sbjct: 607 NEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEE 666
Query: 317 T------RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C H + +S + ERE++V+D FH +K+G CSC+D +
Sbjct: 667 KDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
V +++ S+CG++DDA + F T +K+ + WT +ISA V +P EAL +F++
Sbjct: 280 VSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSG 339
Query: 143 TSMNPTTFRSALKAYALMGLVGEA 166
+ + S + A A +G++ +A
Sbjct: 340 IKPDVVSMFSVISACANLGILDKA 363
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 112/409 (27%), Positives = 190/409 (46%), Gaps = 57/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSC--LNPILLNVGTQAQ 69
+ W ++ + E+ ER+Q D ++ ++++C L +
Sbjct: 238 VAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDV 297
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
A + G S+ VG+ LI++ ++CG ++DA F+ E+N S++ +I HG
Sbjct: 298 AEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAG 357
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
A++LF + N TF L A + G+V + +LF MEE + + PSE+HY+ M
Sbjct: 358 AAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACM 417
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
V+ LGRAG EE L +K ++P +W LL + R+HG+ +A+ A L EL+P
Sbjct: 418 VDLLGRAGRLEEALNLVK-MMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEPNG 476
Query: 248 -GMYV-------------------------------GC-WIEIQNK-IYEFVSNE---EL 270
G Y+ GC W+E + I+EF + +
Sbjct: 477 IGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGDMSHPK 536
Query: 271 TSEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGM 315
+ E+ L ++ + +K LG+ N S + ++ A+A GL++ G
Sbjct: 537 SREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSEKLALAFGLLTTNAGC 596
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
R++K++ +C HS S I RE+VV+D FHHF+DG+CSC +
Sbjct: 597 TIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDGRCSCGN 645
>gi|115482642|ref|NP_001064914.1| Os10g0488900 [Oryza sativa Japonica Group]
gi|113639523|dbj|BAF26828.1| Os10g0488900, partial [Oryza sativa Japonica Group]
Length = 366
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 166/367 (45%), Gaps = 54/367 (14%)
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
+ C LL G Q A + K LI VG+ L+++ +CG I + F +
Sbjct: 1 IKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTD 60
Query: 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS 172
++W +I+ HGH EA+ F + N F S L A + GLV E + F S
Sbjct: 61 IAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYS 120
Query: 173 MEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDM 232
M+E + IEP EEHYS +++ GRAG +E +FI + P K W +LL + R+ G
Sbjct: 121 MKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEM-PIKPNAYGWCSLLGACRMRGSK 179
Query: 233 KLAKYALDKLLELDP----------GMYVG-------------------------CWIEI 257
+L + A L++L+P G+Y W++
Sbjct: 180 ELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDS 239
Query: 258 QNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRSL---------------YQT 299
K + F S + ++ +KL E+ +KE G++ + S Y +
Sbjct: 240 NKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHS 299
Query: 300 KMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGK 359
+ AVA LIS P P V K++ +C H+A +F+ + R+++V+D FHHF +G+
Sbjct: 300 ERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGR 359
Query: 360 CSCKDAY 366
CSC D +
Sbjct: 360 CSCGDYW 366
>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g11460
gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 623
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 190/402 (47%), Gaps = 48/402 (11%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + V EL E+++ D +++ +L+SC + +G +
Sbjct: 223 ITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKL 282
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G + + V N I++ +RCG + A F P K+ +SWT +I HG
Sbjct: 283 VESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIG 342
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF D R + F L A + GL + LF +M+ Y +EP EHYS +V+
Sbjct: 343 LMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVD 402
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG +E +EFI+ + P + +W LL + ++H ++ +A+ A K++E +P G
Sbjct: 403 LLGRAGRLDEAMEFIESM-PVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIG 461
Query: 249 MYV-------------GCW-------------------IEIQNKIYEFVSNE---ELTSE 273
YV G W +E + +++ F++ + E T E
Sbjct: 462 YYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEE 521
Query: 274 VSDKLAEIEENMKELGF---------VLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVG 324
V L E+E ++ EL V + + ++ A+A G+++ G VIK++
Sbjct: 522 VHRMLDELETSVMELAGNMDCDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLR 581
Query: 325 MCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+C H + +S I++R+ VV+D FH+FKDG CSCKD +
Sbjct: 582 VCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%)
Query: 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQ 67
S + + +N L+ + R++ +DS ++ ++ C P L +G
Sbjct: 118 SQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRS 177
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
K GL S AV N I + +CG ++ F P K ++W +IS +G
Sbjct: 178 LHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGL 237
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+ L+L++ + +P T S L + A +G
Sbjct: 238 AYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLG 271
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 13 PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
PWN+ L+ + L + D++S IL SC + L G Q ++
Sbjct: 20 PWNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 79
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLS--WTFIISARVNHGHPSE 130
TK G + P V LI++ +CG + DA F+ P+ + LS + +IS + ++
Sbjct: 80 TKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTD 139
Query: 131 ALDLFKDKQWRYTSMNPTT 149
A +F+ + S++ T
Sbjct: 140 AAYMFRRMKETGVSVDSVT 158
>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/361 (29%), Positives = 177/361 (49%), Gaps = 60/361 (16%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L +G + + GL VG +I++ +CG+++ A LAF KN SWT +I+
Sbjct: 303 LRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAG 362
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
HGH ++AL+LF N TF S L A + GL + F +M+ + +EP
Sbjct: 363 YGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEP 422
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYAL 239
EHY MV+ LGRAG ++ + I+ + K+ P +IW +LL + R+H +++LA+ ++
Sbjct: 423 GLEHYGCMVDLLGRAGFLQKAYDLIQKM---KMEPDSIIWSSLLAACRIHKNVELAEISV 479
Query: 240 DKLLELDP---GMYV---------GCW-----------------------IEIQNKIYEF 264
+L ELDP G Y+ G W +E+ +++ F
Sbjct: 480 ARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVF 539
Query: 265 VSNEE---LTSEVSDKLAEIEENMKELGFVLNRS----------------LYQTKMKAVA 305
+ +E ++ + LAE+ + E G+V N S ++ K+ A+A
Sbjct: 540 LIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKL-AIA 598
Query: 306 LGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDA 365
G+++ G V+K++ +C H+ + +S I++RE VV+D FHHFKDG CSC D
Sbjct: 599 FGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGFCSCGDY 658
Query: 366 Y 366
+
Sbjct: 659 W 659
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 55 SCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLS 114
S L I T QA++ G S V + LI + S CGK++DA F P++N +S
Sbjct: 87 SSLLDIFSGKQTHQQAFVF--GYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVS 144
Query: 115 WTFIISARVNHGHPSEALDLFKD 137
WT +I +G+ +A+ LFKD
Sbjct: 145 WTSMIRGYDLNGNALDAVSLFKD 167
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGK--IDDA 100
F+DS + ++++C + +++ KRG +VGN L++ ++ G+ + A
Sbjct: 180 FLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVA 239
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
F +K+ +S+ I+S G +EA D+F+
Sbjct: 240 RKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFR 275
>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 110/407 (27%), Positives = 195/407 (47%), Gaps = 56/407 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A ++A +E +LL +Q D ++ I ++C L++ Y
Sbjct: 422 VSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTY 481
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + +G L+++ SRCG +A F++ +++ +WT I + G+ A
Sbjct: 482 IEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGA 541
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
++LF + + + F + L A++ G V + +LF +ME+++ + P HY MV+
Sbjct: 542 IELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVD 601
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG+ EE + +K + P K +IW + L + R H +++ A YA +K+ +L P G
Sbjct: 602 LLGRAGLLEEAFDLMKSM-PIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVG 660
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNEELTSE--- 273
++V G W IE+ I EF S +E +E
Sbjct: 661 IHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTENAQ 720
Query: 274 VSDKLAEIEENMKELGFVLNR----------------SLYQTKMKAVALGLISFPHGMPT 317
+ L EI + ++G+V + S + K+ A+A GLI+ G+P
Sbjct: 721 IGLMLQEINCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEKL-AMAYGLINTGKGIPI 779
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
RV+K++ MC HS + +S + RE+ V+D +H FK+G CSC+D
Sbjct: 780 RVVKNLRMCSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCSCRD 826
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+++ +L++C + + G Q + K GL+ V N LI+ + CGK+D F
Sbjct: 121 DNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVF 180
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
E+N +SWT +I+ EA+ LF + NP T A+ A A
Sbjct: 181 DEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACA 234
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 4/130 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ + +C L+VG + AY+ + GL + N +I++ +CGK + A F
Sbjct: 323 DKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVF 382
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
S K ++W +I+ V G AL +F + N ++ + + A +
Sbjct: 383 DSMSNKTVVTWNSLIAGLVRDGELELALRIFGE----MPESNLVSWNTMIGAMVQASMFE 438
Query: 165 EAYRLFLSME 174
EA L M+
Sbjct: 439 EAIDLLREMQ 448
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 49 ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP 108
+C I ++C L +G + MT+ G+ S+ V N L+++ +CG + F
Sbjct: 227 VCAI-SACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFS 285
Query: 109 EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+KN + + I+S V HG E L + + + + T S + A A +G
Sbjct: 286 DKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLG 338
>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
Length = 814
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 109/429 (25%), Positives = 205/429 (47%), Gaps = 74/429 (17%)
Query: 12 IPWNLLLKA---CIKAKDYEMVHELLERIQLCCGFIDSY-------------SICDILNS 55
+ WN ++ + C ++ D ++ ++RI+ + Y ++ +L
Sbjct: 386 VSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPG 445
Query: 56 CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSW 115
C + L G + AY + L S VG+ L+++ ++CG ++ A F P +N ++W
Sbjct: 446 CASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITW 505
Query: 116 TFIISARVNHGHPSEALDLFKD---KQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLF 170
II A HG E+L+LF+D + + + PT TF + + + G+V E LF
Sbjct: 506 NVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLF 565
Query: 171 LSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
M+ + IEP+ +HY+ +V+ +GRAG EE + + G W +LL + R++
Sbjct: 566 HKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYH 625
Query: 231 DMKLAKYALDKLLELDPGM---YV-------------------------------GC-WI 255
++++ + A + LL+L P + YV GC WI
Sbjct: 626 NIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWI 685
Query: 256 EIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRSLY--------------- 297
E +++++F++ + + ++ D L + E +K+ G+V + +
Sbjct: 686 EYGDEVHKFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKETILCG 745
Query: 298 QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKD 357
++ A+A G+++ P G RV K++ +C H+A +F+S I +RE++++D FHHFKD
Sbjct: 746 HSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKD 805
Query: 358 GKCSCKDAY 366
G CSC D +
Sbjct: 806 GTCSCGDYW 814
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRG-LISHPAVGNCLININSRCGKIDDADLA 103
D + +L +C + LL G + AY + +I + VG+ L+++ CG+++ L
Sbjct: 215 DGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLV 274
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYT-SMNPTTFRSALKAY 157
F S ++ W +I+ H +AL LF + + N TT S + AY
Sbjct: 275 FDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAY 329
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
Y+ KRGL ++ + N LI++ SR G I + F S +++ +SW II++ V G
Sbjct: 342 HGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRS 401
Query: 129 SEALDLFKDKQ 139
S+AL L + Q
Sbjct: 402 SDALLLLHEMQ 412
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV--GNCLININSRCGKIDDADL 102
D+++ +L + L +G Q A++ K G S +V N L+N+ +CG + DA
Sbjct: 9 DNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYK 68
Query: 103 AFKSTPEKNSLSWTFIISA 121
F E++ +SW IISA
Sbjct: 69 VFDRITERDQVSWNSIISA 87
>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 643
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 117/422 (27%), Positives = 187/422 (44%), Gaps = 59/422 (13%)
Query: 1 LKLCSLISDVE-IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP 59
+K+ SD + + WN +L + E + R+ + ++ + N
Sbjct: 225 MKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNL 284
Query: 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
LL +G Q AY+ + + + + LI++ +CG +D A F + +SWT +I
Sbjct: 285 SLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMI 344
Query: 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179
HG +EA LF+ + N TF + L A + GLV ++ F SM Y
Sbjct: 345 MGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGF 404
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPL--IWRTLLLSSRVHGDMKLAKY 237
PS EH + + + LGRAG +E FI + K+ P +W TLL + RVH + LA+
Sbjct: 405 VPSLEHCAALADTLGRAGDLDEAYNFISEM---KIKPTSSVWSTLLRACRVHKNTVLAEE 461
Query: 238 ALDKLLELDP----------GMYVGC-------------------------WIEIQNKIY 262
K+ EL+P MY WIE++NK++
Sbjct: 462 VAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLH 521
Query: 263 EFVSNEE---LTSEVSDKLAEIEENMKELGFVLN-------------RSLY--QTKMKAV 304
F+++++ + D L E M G+V N R + ++ A+
Sbjct: 522 VFIAHDKSHPWYDRIIDALNVYSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKLAI 581
Query: 305 ALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G+IS P G RV+K++ +C H A +F+S I+ RE+VV+D FH FKDG CSC D
Sbjct: 582 VFGIISTPPGTTIRVMKNLRVCVDCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGD 641
Query: 365 AY 366
+
Sbjct: 642 FW 643
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 10/157 (6%)
Query: 12 IPWNLLLKACIKAKDYE----MVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGT 66
+ WN L+ C + K ++ MV E+ GF+ D++++ +L + G
Sbjct: 136 VSWNTLILGCAEHKRHQEALSMVREMWRD-----GFMPDTFTLSTVLPIFAECADIKRGM 190
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Y K G + VG+ LI++ + C ++D + F S + +++ W +++ +G
Sbjct: 191 VVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNG 250
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
EAL +F+ P TF S + A+ + L+
Sbjct: 251 SVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLL 287
>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
Length = 693
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 114/414 (27%), Positives = 198/414 (47%), Gaps = 67/414 (16%)
Query: 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQ 69
I WN ++ + + E L R+QL DS+++ ++ P + ++ Q
Sbjct: 286 TRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVI-----PAVADISDPLQ 340
Query: 70 A-----YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
A Y + L V LI++ S+CG++ A F S +++ ++W +I +
Sbjct: 341 ARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGS 400
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
HG A++LF++ + + N TTF S L A + GLV E + F SM++ Y +EP E
Sbjct: 401 HGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGME 460
Query: 185 HYSIMVEALGRAGMFEEVLEFIKG--IVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
HY MV+ LGRAG +E FIK I PG ++ +L + ++H +++LA+ + +
Sbjct: 461 HYGTMVDLLGRAGKLDEAWSFIKNMPIEPG---ISVYGAMLGACKLHKNVELAEESAQII 517
Query: 243 LELDP--GMY----------VGCW-----------------------IEIQNKIYEFVS- 266
EL P G+Y W I+++N+++ F S
Sbjct: 518 FELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSG 577
Query: 267 --NEELTSEVSDKLAEIEENMKELGFV------------LNRSLYQTKMK--AVALGLIS 310
N + ++ +LA++ E +K++G+V + L T + A+A GLI
Sbjct: 578 STNHQHAKDIYARLAKLIEEIKDMGYVPDTDSIHDVEDDVKAQLLNTHSEKLAIAYGLIR 637
Query: 311 FPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G ++ K++ +C H+A + +S + RE++++D FHHFKDGKCSC D
Sbjct: 638 TAPGTTIQIKKNLRVCNDCHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGD 691
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 60/125 (48%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS ++ +L +C + L+ + A+ + GL V +++ +CG ++ A F
Sbjct: 118 DSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVF 177
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P +NS+SW +I ++G+ +EA+ LF + + +AL+A +G +
Sbjct: 178 DCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLD 237
Query: 165 EAYRL 169
E R+
Sbjct: 238 EVRRV 242
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L C L G A + RGL S L N+ +C + DA F P ++
Sbjct: 22 LLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRMPSRD 81
Query: 112 SLSWTFIISARVNHGHPSEALD 133
++W +++ +G PS A++
Sbjct: 82 RVAWNAVVAGYARNGLPSSAME 103
>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
Length = 886
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 182/373 (48%), Gaps = 56/373 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA--VGNCLININSRCGKIDDADL 102
++Y+I IL +C + L +G Q AY+T+ V NCLI++ S+CG +D A
Sbjct: 511 NAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARN 570
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F S P++N +SWT ++S HG EALD+F Q + +F L A + G+
Sbjct: 571 VFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGM 630
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V + F M Y + S +HY+ +++ L R+G ++ + I+ + P + IW L
Sbjct: 631 VDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEM-PMEPSAAIWVAL 689
Query: 223 LLSSRVHGDMKLAKYALDKLLEL---DPGMYV---------------------------- 251
L + RVH +++LA+YAL+KL+ + + G Y
Sbjct: 690 LSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIK 749
Query: 252 ---GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV--LNRSLY----- 297
GC W++ + F + L+ E+ L + +K +G+V N +L+
Sbjct: 750 KRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDE 809
Query: 298 --------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
++ A+A GL++ G P R+ K++ +CG HSA ++S I++ E++V+D
Sbjct: 810 EKNNLLTEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDS 869
Query: 350 GSFHHFKDGKCSC 362
FHHFK+G CSC
Sbjct: 870 SRFHHFKNGSCSC 882
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 8/204 (3%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERI------QLCCGFIDSYSICDILNSCLNPI 60
I DV I WN ++ A +K + +L + + D SI +IL +C +
Sbjct: 215 IDDV-ISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLK 273
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L + +Y + G + V N LI+ ++CG + DA F K+ +SW +++
Sbjct: 274 ALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVT 333
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
G A +LFK+ + ++ T+ + + YA G EA F M +Y E
Sbjct: 334 GYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQM-ILYGSE 392
Query: 181 PSEEHYSIMVEALGRAGMFEEVLE 204
P+ ++ A G + +E
Sbjct: 393 PNSVTIISLLSACASLGALSQGME 416
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLIS------------HPAVGNCLININS 92
+S +I +L++C + L+ G + AY K+ L+S V N LI++ S
Sbjct: 394 NSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYS 453
Query: 93 RCGKIDDADLAFKSTP--EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
+C A F S P E+N ++WT +I +G ++AL LF + + ++ P +
Sbjct: 454 KCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAY 513
>gi|215713517|dbj|BAG94654.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222635568|gb|EEE65700.1| hypothetical protein OsJ_21333 [Oryza sativa Japonica Group]
Length = 382
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 182/383 (47%), Gaps = 65/383 (16%)
Query: 42 GFIDSY-SICDILNSCLNPILLNVGTQAQAYMTK--RGLISHPAVGNCLININSRCGKID 98
GF+ + ++ +L +C + L VG Q A++ K + LI H N L+++ +CG +
Sbjct: 7 GFLSNQGTLTSVLRACTGLVTLEVGRQVHAHVLKYDKDLILH----NALLDMYCKCGSLQ 62
Query: 99 DADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
DAD F P+++ +SW+ +IS +G EAL +F + N T L A +
Sbjct: 63 DADALFGRMPQRDVISWSTMISGLAQNGRSIEALKVFDMMKSEGPRPNHITMVGVLFACS 122
Query: 159 LMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP-- 216
GLV + + F SME+++ I+P EH + MV+ LGRAG ++ ++FI + P
Sbjct: 123 HAGLVEDGWYYFSSMEKLFGIQPEREHCNCMVDLLGRAGKLDDAVKFIHEM---NFQPDS 179
Query: 217 LIWRTLLLSSRVHGDMKLAKYALDKLLELDP----------GMYVG-------------- 252
+IWRTLL + R+H + LA YA ++L L+P Y
Sbjct: 180 VIWRTLLGACRMHKNADLAAYAAKEILRLEPDDQGARILLSNTYADLRQWADAEKSWKMM 239
Query: 253 -----------CWIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRSL-- 296
WIE+ +++ F++ + + + +L+ + + LG+
Sbjct: 240 RDRGVKKDPGRSWIELGKQVHVFIAGDLSHPCSESIIQELSRLFSRVTNLGYTPQTEFVL 299
Query: 297 -------------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERE 343
Y ++ A+A G ++ G P R++K++ +CG H+ + +S +
Sbjct: 300 QDLATEQKEDLLKYHSEKLAIAFGTMNAMEGKPIRIMKNLRICGDCHAFAKLVSKSEGKV 359
Query: 344 LVVKDPGSFHHFKDGKCSCKDAY 366
++++DP FHHF+DG CSC D +
Sbjct: 360 IIIRDPVRFHHFQDGVCSCNDYW 382
>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 1135
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/433 (26%), Positives = 196/433 (45%), Gaps = 79/433 (18%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCG------FID------------SYSICDIL 53
+ WN ++ CI Y+ LL +Q G F+D S ++ +L
Sbjct: 704 VSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVL 763
Query: 54 NSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSL 113
C L G + AY K+ L AVG+ L+++ ++CG ++ A F P +N +
Sbjct: 764 PGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVI 823
Query: 114 SWTFIISARVNHGHPSEALDLFK------DKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
+W +I A HG EAL+LF+ N T+ + A + G+V E
Sbjct: 824 TWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGL 883
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPL-IWRTLLLSS 226
LF +M+ + +EP +HY+ +V+ LGR+G +E E I +P L + W +LL +
Sbjct: 884 HLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELIN-TMPSNLNKVDAWSSLLGAC 942
Query: 227 RVHGDMKLAKYALDKLLELDPGM---YV-------------------------------G 252
R+H ++ + A L L+P + YV G
Sbjct: 943 RIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPG 1002
Query: 253 C-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSLY----------- 297
C WIE +++++F+S + + E+ + L + + M++ G+V + S
Sbjct: 1003 CSWIEHGDEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDEEKET 1062
Query: 298 ----QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
++ A+A GL++ P G RV K++ +C H A + +S I++RE++++D FH
Sbjct: 1063 MLCGHSERLAIAFGLLNTPPGTTIRVAKNLRVCNDCHVATKIISKIVDREIILRDVRRFH 1122
Query: 354 HFKDGKCSCKDAY 366
HF +G CSC D +
Sbjct: 1123 HFANGTCSCGDYW 1135
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Query: 14 WNLLLKACIKAK-DYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN LL + + D + + +E I ++ + +L +C+ + + Y+
Sbjct: 604 WNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYI 663
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
KRG V N L+++ SR G+++ + F +++ +SW +I+ + G +AL
Sbjct: 664 VKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDAL 723
Query: 133 DLFKDKQWRYTSMNPTTF 150
+L + Q R TF
Sbjct: 724 NLLHEMQRRQGEDGSDTF 741
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLI--SHPAVGNCLININSRCGKIDDADL 102
D+++ +L + L +G Q A++ K G S AV N L+N+ +CG + A
Sbjct: 329 DNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQ 388
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
F P+++ +SW +I+ +L LF + +++PT+F A+A
Sbjct: 389 VFDDIPDRDHVSWNSMIATLCRFEEWELSLHLF--RLMLSENVDPTSFTLVSVAHA 442
Score = 38.1 bits (87), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFID--SYSICDILNSCLNPIL-LNVGTQA 68
+ WN ++ + +++E+ L R+ L +D S+++ + ++C + + +G Q
Sbjct: 399 VSWNSMIATLCRFEEWELSLHLF-RLMLSEN-VDPTSFTLVSVAHACSHVRGGVRLGKQV 456
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
AY + G + N L+ + +R G+++DA F K+ +SW +IS+ +
Sbjct: 457 HAYTLRNGDL-RTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRF 515
Query: 129 SEAL 132
EAL
Sbjct: 516 EEAL 519
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 115/417 (27%), Positives = 195/417 (46%), Gaps = 69/417 (16%)
Query: 11 EIPWNLLL----KACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
+I WN ++ ++ + + E+ H ++ + + ++ ++ +L +C + L G
Sbjct: 2190 DISWNSMIAVYAQSGLSGEALEVFHGMVRHVGV---RYNAVTLSAVLLACAHAGALRAGK 2246
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ K L + VG +I++ +CG+++ A F EKN SWT +++ HG
Sbjct: 2247 CIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHG 2306
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
EALD+F N TF S L A + GLV E + F +M+ Y IEP EHY
Sbjct: 2307 RAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHY 2366
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLE 244
MV+ GRAG E IK + K+ P ++W +LL + R+H ++ L + A KL E
Sbjct: 2367 GCMVDLFGRAGCLNEAYNLIKRM---KMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFE 2423
Query: 245 LDP---GMYV---------GCWIEIQNKIYEFVSNEELTSE----------------VSD 276
LDP G YV G W +++ ++ + N +L V D
Sbjct: 2424 LDPDNCGYYVLLSNLYADAGRWADVE-RMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGD 2482
Query: 277 K-----------LAEIEENMKELGFVLNRS----------------LYQTKMKAVALGLI 309
K L ++ ++++G+V N + ++ K+ AVA G++
Sbjct: 2483 KEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKL-AVAFGVM 2541
Query: 310 SFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ G +IK++ +CG H+ + +S ++ R+ VV+D FHHFKDG CSC D +
Sbjct: 2542 NSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 91/198 (45%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ I+ + E EL +R+Q F + Y++ ++ +C +L +G Y
Sbjct: 223 VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDY 282
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + +G LI++ S+CG I DA F++ P K+ +W +I++ HG EA
Sbjct: 283 AIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEA 342
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+LF + + + TF L A + V E F M + Y I P EHY M E
Sbjct: 343 LNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTE 402
Query: 192 ALGRAGMFEEVLEFIKGI 209
R+ +E + K +
Sbjct: 403 LYARSNNLDEAFKSTKEV 420
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 111/273 (40%), Gaps = 55/273 (20%)
Query: 14 WNLLLKA-CIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAY 71
WNL+++A I + + +L + +C G D ++ ++ +C N + +++G
Sbjct: 93 WNLIIRANTINGLSEQAL--MLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGS 150
Query: 72 MTKRGLISHPAVGNCLININSRCG-------------------------------KIDDA 100
+ K G V N LI+ +CG + +A
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA 210
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
F P KN +SWT +I+ + + P EAL+LFK Q N T S +KA M
Sbjct: 211 RRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEM 270
Query: 161 GLVGEAYRLFLSMEEVYH-------IEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGK 213
G+ L++ H IE + +++ + G ++ +E + +P K
Sbjct: 271 GI--------LTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFE-TMPRK 321
Query: 214 LCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
P W +++ S VHG L + AL+ E++
Sbjct: 322 SLP-TWNSMITSLGVHG---LGQEALNLFSEME 350
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 36 RIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCG 95
R C ++CD+++ + + QA++ G + V + LI++ S+CG
Sbjct: 2015 RSSFPCTIKSCSALCDLVSGRM--------SHQQAFVF--GFETDLFVSSALIDMYSKCG 2064
Query: 96 KIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
++ DA F P +N +SWT +I+ V + AL LFKD
Sbjct: 2065 QLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKD 2106
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+DS + +L++C + ++ K+G VGN L++ ++CG+ +
Sbjct: 2122 LDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKV 2181
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
F EK+ +SW +I+ G EAL++F
Sbjct: 2182 FDWMEEKDDISWNSMIAVYAQSGLSGEALEVF 2213
>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
Length = 659
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/361 (29%), Positives = 177/361 (49%), Gaps = 60/361 (16%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L +G + + GL VG +I++ +CG+++ A AF KN SWT +I+
Sbjct: 303 LRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAG 362
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
HGH ++AL+LF N TF S L A + GL E +R F +M+ + +EP
Sbjct: 363 YGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEP 422
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYAL 239
EHY MV+ LGRAG ++ + I+ + K+ P +IW +LL + R+H +++LA+ ++
Sbjct: 423 GLEHYGCMVDLLGRAGFLQKAYDLIQRM---KMKPDSIIWSSLLAACRIHKNVELAEISV 479
Query: 240 DKLLELDP---GMYV---------GCW-----------------------IEIQNKIYEF 264
+L ELD G Y+ G W +E+ +++ F
Sbjct: 480 ARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVF 539
Query: 265 VSNEE---LTSEVSDKLAEIEENMKELGFVLNRS----------------LYQTKMKAVA 305
+ +E ++ + LAE+ + E G+V N S ++ K+ A+A
Sbjct: 540 LIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKL-AIA 598
Query: 306 LGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDA 365
G+++ G V+K++ +C H+ + +S I++RE VV+D FHHFKDG CSC D
Sbjct: 599 FGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDY 658
Query: 366 Y 366
+
Sbjct: 659 W 659
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 55 SCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLS 114
S L I T QA++ G S V + LI + S CGK++DA F P+++ +S
Sbjct: 87 SSLFDIFSGKQTHQQAFVF--GYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVS 144
Query: 115 WTFIISARVNHGHPSEALDLFKD 137
WT +I +G+ +A+ LFKD
Sbjct: 145 WTSMIRGYDLNGNALDAVSLFKD 167
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGK--IDDA 100
F+DS + ++++C + +++ KRG +VGN L++ ++ G+ + A
Sbjct: 180 FLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVA 239
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKD-KQWRYTSMNPTTFRSALKAYAL 159
F +K+ +S+ I+S G +EA ++F+ + + + N T + L A +
Sbjct: 240 RKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSH 299
Query: 160 MG 161
G
Sbjct: 300 SG 301
>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26782, mitochondrial; Flags: Precursor
gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/361 (29%), Positives = 177/361 (49%), Gaps = 60/361 (16%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L +G + + GL VG +I++ +CG+++ A AF KN SWT +I+
Sbjct: 303 LRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAG 362
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
HGH ++AL+LF N TF S L A + GL E +R F +M+ + +EP
Sbjct: 363 YGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEP 422
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYAL 239
EHY MV+ LGRAG ++ + I+ + K+ P +IW +LL + R+H +++LA+ ++
Sbjct: 423 GLEHYGCMVDLLGRAGFLQKAYDLIQRM---KMKPDSIIWSSLLAACRIHKNVELAEISV 479
Query: 240 DKLLELDP---GMYV---------GCW-----------------------IEIQNKIYEF 264
+L ELD G Y+ G W +E+ +++ F
Sbjct: 480 ARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVF 539
Query: 265 VSNEE---LTSEVSDKLAEIEENMKELGFVLNRS----------------LYQTKMKAVA 305
+ +E ++ + LAE+ + E G+V N S ++ K+ A+A
Sbjct: 540 LIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKL-AIA 598
Query: 306 LGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDA 365
G+++ G V+K++ +C H+ + +S I++RE VV+D FHHFKDG CSC D
Sbjct: 599 FGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDY 658
Query: 366 Y 366
+
Sbjct: 659 W 659
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 55 SCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLS 114
S L I T QA++ G S V + LI + S CGK++DA F P++N +S
Sbjct: 87 SSLFDIFSGKQTHQQAFVF--GYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVS 144
Query: 115 WTFIISARVNHGHPSEALDLFKD 137
WT +I +G+ +A+ LFKD
Sbjct: 145 WTSMIRGYDLNGNALDAVSLFKD 167
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGK--IDDA 100
F+DS + ++++C + +++ KRG +VGN L++ ++ G+ + A
Sbjct: 180 FLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVA 239
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKD-KQWRYTSMNPTTFRSALKAYAL 159
F +K+ +S+ I+S G +EA ++F+ + + + N T + L A +
Sbjct: 240 RKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSH 299
Query: 160 MG 161
G
Sbjct: 300 SG 301
>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Brachypodium distachyon]
Length = 1206
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 115/426 (26%), Positives = 189/426 (44%), Gaps = 67/426 (15%)
Query: 1 LKLCSLISDV-EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP 59
L++ S + DV E+ WN ++ K+ E + ++ + +L +C +
Sbjct: 788 LEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACAST 847
Query: 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
+N Q + K S V N LI+ ++CG I DA F++ E + +SW II
Sbjct: 848 ASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAII 907
Query: 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179
S HG + A +LF N TF + L GLV + LF SM + I
Sbjct: 908 SGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGI 967
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239
EPS EHY+ +V LGRAG + L FI G +P ++WR LL S VH +++L +++
Sbjct: 968 EPSMEHYTCIVRLLGRAGRLNDALNFI-GDIPSAPSAMVWRALLSSCIVHKNVELGRFSA 1026
Query: 240 DKLLELDP----------GMYVGC-------------------------WIEIQNKIYEF 264
+K+LE++P MY W+EI+ +++ F
Sbjct: 1027 EKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAF 1086
Query: 265 VSNEE-----------------------LTSEVSDKLAEIEENMKELGFVLNRSLY-QTK 300
E + + L ++EE K R L+ ++
Sbjct: 1087 SVGSEDHPCMRVINAMLEWLNLKAIREGYVPDTDEVLHDLEEEQKV------RMLWVHSE 1140
Query: 301 MKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKC 360
A+A GL+ P G P R++K++ C H+ + +S I+++E++V+D FHHF++G C
Sbjct: 1141 RLALAYGLVMTPPGHPIRIMKNLRSCLDCHAIFKVISKIVKQEIIVRDINRFHHFEEGTC 1200
Query: 361 SCKDAY 366
SC D +
Sbjct: 1201 SCGDYW 1206
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 104/238 (43%), Gaps = 5/238 (2%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
+ +D I W+L++ + E EL R+ + +S+ +L +C N LL++G
Sbjct: 693 VTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLG 752
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Q + K G S VGN LI++ ++C ++ + F S + N +SW II
Sbjct: 753 KQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKS 812
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
G AL +F++ + T+ S L+A A + ++ +E+ +
Sbjct: 813 GFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVS 872
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLI-WRTLLLSSRVHGDMKLAKYALDKL 242
S ++++ + G + E + + K C L+ W ++ VHG +A+ D +
Sbjct: 873 NS-LIDSYAKCGCIRDAREIFETL---KECDLVSWNAIISGYAVHGQAAMAQELFDMM 926
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 2 KLCSLISDVE-----------IPWNLLLKACIKAKD-YEMVHELLERIQLCCGFIDSYSI 49
+C ++SD + W ++ +C D E ++ ++++ ++ +++
Sbjct: 577 SMCGVVSDARRVFDGIVGKDAVAWTAMV-SCYSENDCPENTLQIFSKMRVAVSKLNPFAL 635
Query: 50 CDILNS--CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
+L + CL+ ++L G A + T H V L+++ ++CG I+DA LAF+
Sbjct: 636 TSVLRAAVCLSSVVLGKGIHACSVKTLYDTERH--VYGALLDMYAKCGNIEDARLAFEMV 693
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
+ + W+ +IS +A +LF S N + S L+A A M L+
Sbjct: 694 TNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLL 749
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 58/131 (44%)
Query: 26 DYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGN 85
++E L +R++ ++ + + +L + L + A K G + VG+
Sbjct: 511 EFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGS 570
Query: 86 CLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM 145
LI+ S CG + DA F K++++WT ++S + P L +F + + +
Sbjct: 571 ALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKL 630
Query: 146 NPTTFRSALKA 156
NP S L+A
Sbjct: 631 NPFALTSVLRA 641
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 3/169 (1%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV--GNCLININSRCGKIDDAD 101
+DSY+ +L C+ G ++ + G ++ + N L+N+ ++ G A
Sbjct: 426 VDSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAH 485
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
F PE+N +S+ ++ G EA LF+ +W +N + LK M
Sbjct: 486 RVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMD 545
Query: 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIV 210
+G A+ + ++ H + + S +++A G+ + GIV
Sbjct: 546 TLGLAWGVHACACKLGH-DRNAFVGSALIDAYSMCGVVSDARRVFDGIV 593
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 114/410 (27%), Positives = 194/410 (47%), Gaps = 56/410 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ Y+ L + + + ++ +L +C + +++G Y
Sbjct: 283 VSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVY 342
Query: 72 MTKR--GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ KR G+ + A+ LI++ ++CG I+ A F S K+ SW +I HG +
Sbjct: 343 IDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRAN 402
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
A DLF + + T L A + GL+ +F S+ + Y+I P EHY M
Sbjct: 403 AAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCM 462
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
++ LG AG+F+E E I ++P + +IW +LL + ++HG+++LA+ KL+E++P
Sbjct: 463 IDLLGHAGLFKEAEEIIH-MMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPEN 521
Query: 248 -GMYV---------GCW-----------------------IEIQNKIYEFVSNEEL---T 271
G YV G W IEI + ++EF+ ++L +
Sbjct: 522 SGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQS 581
Query: 272 SEVSDKLAEIEENMKELGFVLNRSLYQTKMK---------------AVALGLISFPHGMP 316
E+ L E++ ++E GFV + S +M+ A+A GLIS G
Sbjct: 582 REIYRMLEEMDVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTK 641
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ +C H A + +S I +RE+V +D FHHF+DG CSC D +
Sbjct: 642 LTVVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ ++ YE EL + + D ++ +L++C + +G +
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTL 240
Query: 72 MTKR-GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ G S + N I + S+CG ++ A F+ K+ +SW +I + E
Sbjct: 241 VDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKE 300
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
AL LF++ S N T S L A A +G +
Sbjct: 301 ALLLFQEMLRSGESPNDVTMLSVLPACAHLGAI 333
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 4/148 (2%)
Query: 16 LLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKR 75
LLK+C K+K +E ++ ++ +D Y+ +++ L + ++R
Sbjct: 88 FLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQR 147
Query: 76 GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
++S A LI + G + A F E++ +SW +I+ V + EAL+LF
Sbjct: 148 DVVSCTA----LITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELF 203
Query: 136 KDKQWRYTSMNPTTFRSALKAYALMGLV 163
K+ + T S L A A G +
Sbjct: 204 KEMMRTNVRPDEGTLVSVLSACAQSGSI 231
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 192/408 (47%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN+++ ++ ++ E+ +Q+ + ++ +L + L +G Y
Sbjct: 225 VSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLY 284
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + +G+ LI++ ++CG I+ A F+ P++N ++W+ II+ HG +
Sbjct: 285 AVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDT 344
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LD F+D + + T+ L A + GLV E F M V +EP EHY MV+
Sbjct: 345 LDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVD 404
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG+ EE E I + P K +IW+ LL + ++HG++++ K + L+EL P G
Sbjct: 405 LLGRAGLLEESEELILNM-PIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSG 463
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTSE 273
YV GC WIE+ I+EF+ ++ + +
Sbjct: 464 SYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKK 523
Query: 274 VSDKLAEIEENMKELGFVLNRSLYQTKMK---------------AVALGLISFPHGMPTR 318
+ L E+ N+ +G+ N + T M A+A GLIS P R
Sbjct: 524 IHSMLQEMSRNLILVGYRPNTTQVLTNMDEEDKESSLNYHSEKIAIAFGLISTQPQTPLR 583
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +C HS+ + +S I +R+++V+D FHHF +G CSC D +
Sbjct: 584 ITKNLRICEDCHSSIKLISKIYKRKIIVRDRKRFHHFVNGSCSCMDYW 631
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 81/175 (46%), Gaps = 10/175 (5%)
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
KR + + N +I+ R G+++ A F P+++ +SW +I+ GH EA++
Sbjct: 186 KRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVE 245
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGL--VGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+F++ Q N T S L A + +G +G+ L+ +I + S +++
Sbjct: 246 VFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRN---NIGVDDVLGSALID 302
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+ G E+ L+ +G+ K + W T++ +HG AK LD +++
Sbjct: 303 MYAKCGSIEKALQVFEGL--PKRNVVTWSTIIAGLAMHGR---AKDTLDHFEDME 352
>gi|302142563|emb|CBI19766.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 115/368 (31%), Positives = 179/368 (48%), Gaps = 22/368 (5%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
LI WN L+ ++ + ++Q C +S ++ IL +C N +
Sbjct: 142 LIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPACANLVAAKKV 201
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ + +R L S +V NCLI+ ++ G I A F+ K+ +SW +I+ V H
Sbjct: 202 KEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIAGYVLH 261
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
G ALDLF + TF S + A++L G+V + ++F SM E Y I P EH
Sbjct: 262 GCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMVDKGKQVFSSMMEDYQILPGLEH 321
Query: 186 YSIMVEALGRAGMFEEVLEFIK--GIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
+S M++ LGR+G E +EFI+ I P IW LL +S++HG++ LA A + LL
Sbjct: 322 HSAMIDLLGRSGKLGEAIEFIEDMAIEPDS---CIWAALLTASKIHGNIGLAIRAGECLL 378
Query: 244 ELDPGMYVGCWIEIQNKI---YEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTK 300
EL+P + I +I Y E + D+L EE +E+G V + L
Sbjct: 379 ELEPSNF-----SIHQQILQMYALSGKFEDAPDQHDRLFIEEEEKEEIGGVHSEKL---- 429
Query: 301 MKAVALGLISFPHGMP--TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDG 358
A+A LI P P R++K++ MCG H +F+S + E+ + D H FK+G
Sbjct: 430 --ALAFALID-PSCAPRSVRIVKNLRMCGDCHGTAKFLSMLYSCEIYLSDSKCLHWFKNG 486
Query: 359 KCSCKDAY 366
+CSC D +
Sbjct: 487 RCSCGDYW 494
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%)
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
+++C + L G + + K G + VGN LI++ S+ G+++DA F +K+
Sbjct: 17 ISACASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDV 76
Query: 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS 172
+W +I G+ +A DLF N T+ + + Y G +A LF
Sbjct: 77 YTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHR 136
Query: 173 MEE 175
ME+
Sbjct: 137 MEK 139
>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 793
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/407 (25%), Positives = 189/407 (46%), Gaps = 55/407 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + +E L + D + I +L++C + G Q Y
Sbjct: 386 VSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACADVAAERSGEQVHGY 445
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G+ + V N I++ ++ G +D A + F+ + +SW+ +I + HGH +A
Sbjct: 446 AVKTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIKNPDVVSWSVMICSNAQHGHAKDA 505
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
++LF+ + N TF L A + GLV E R + SM++ Y ++ + +H + +V+
Sbjct: 506 INLFELMKSYGIHPNQITFLGVLTACSHGGLVEEGLRYYESMKKDYDMKINVKHCTCIVD 565
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
L RAG + FI G P++WRTLL R++ D+ K+ +KL+ELDP
Sbjct: 566 LLSRAGRLLDAKNFILNSGFGDH-PVMWRTLLSGCRIYKDIVTGKHVAEKLIELDPQESS 624
Query: 248 ------GMYVGC-------------------------WIEIQNKIYEFVSNE---ELTSE 273
+Y WIE+ N+++ FV + ++
Sbjct: 625 SYVLLYNIYTDAGIDLPATKIRELMKDRGIRKEPGQSWIEVGNEVHSFVVGDISHPMSQI 684
Query: 274 VSDKLAEIEENMKELGF----VLNRSLYQTKMK------------AVALGLISFPHGMPT 317
+ KL + E +++G+ + N ++ ++K AV+ G++S P P
Sbjct: 685 IYKKLEGMLEKKRKIGYIDQKIQNVTISTKEVKGTLGVNHHSEKLAVSFGIVSLPPSAPV 744
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+V+K++ +C H+ + +S + +RE++++D FHHFK+G CSC D
Sbjct: 745 KVMKNLRVCHDCHATMKLISVVEKREIILRDSLRFHHFKEGSCSCND 791
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I +N+L+ Y L ++ C +D +S +L++C +G
Sbjct: 76 ISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFALGKVIHGL 135
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
GL + N LI++ +C +ID A L F+S+ E +++SW +I+ G E
Sbjct: 136 AIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVGAYEEM 195
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
L L +N T SALK+
Sbjct: 196 LKLLVKMHHTGLRLNAFTLGSALKS 220
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 12 IPWNLLLKACIKAKD------YEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
+ +N ++ I+ +D YE + +L ++Q ++ I+ C + G
Sbjct: 280 VMYNAMIAGFIQTEDIDKECAYEAL-KLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYG 338
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Q A++ K + S +G+ LI + S G +D F STP+ + +SWT +I+ +
Sbjct: 339 KQIHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQN 398
Query: 126 GHPSEALDLF 135
G AL LF
Sbjct: 399 GQFESALALF 408
>gi|414876781|tpg|DAA53912.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
Length = 878
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 111/404 (27%), Positives = 189/404 (46%), Gaps = 68/404 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCC-----GFIDSYSICDILNSCLNPI-LLNVG 65
I W L+ C++ +E E +QL C G + C + + + ++ +G
Sbjct: 85 ISWTALITGCVQNGQHE------EALQLFCNMRRAGLSPDRATCSSIIKSSSSLGVIGIG 138
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Q AY+T G +S G+ L+++ ++CG +D+A F PEKNS++W +ISA +
Sbjct: 139 RQLHAYLTTSGHMSSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQY 198
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
G A+ +F +P TF S L A + GL E + F M + P +EH
Sbjct: 199 GQAKNAIRMFDSMLHCGFCPDPVTFLSVLAACSHNGLAEECMKYFDLMRYYNSMSPWKEH 258
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
YS +++ALGRAG F+++ + + + P + P+IW ++L S R++G+ LA A + L +
Sbjct: 259 YSCVIDALGRAGCFDKIQKVLDEM-PFEADPVIWSSILHSCRIYGNQDLATVAAENLFTM 317
Query: 246 DP----------------GMYVGC-------------------WIEIQNKIYEFVSNEE- 269
P G + G W+EI+ KIY F SN+
Sbjct: 318 VPTDATAYVILSNIYAKAGNWEGAARVKKIMRDRGVRKESGNSWVEIKQKIYMFSSNDHT 377
Query: 270 --LTSEVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFP 312
+ E+ ++L + E M + G+ + S Y ++ A+A LI+ P
Sbjct: 378 NPMIDEIKEELERLYEEMDKQGYEPDTSCALHMVDNKQKLESLKYHSERLAIAFALINTP 437
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVV--KDPGSFHH 354
G P V+K++ C H+A + +S I+ R++++ D GSF H
Sbjct: 438 PGTPITVMKNLSACLDCHAAIKMISKIVNRDIILGASDFGSFPH 481
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 3/182 (1%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
+ +G Q A + GL +GN LI++ S+CG +D A F + +K ++SWT +I+
Sbjct: 34 IKIGRQIHAQLILLGLTLEDFMGNALIDMYSKCGMLDAAKTIFANKSDKTAISWTALITG 93
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
V +G EAL LF + + S + T S +K+ + +G++G +L + H+
Sbjct: 94 CVQNGQHEEALQLFCNMRRAGLSPDRATCSSIIKSSSSLGVIGIGRQLHAYLTTSGHMS- 152
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
S S +++ + G +E + + P K + W ++ + +G K A D
Sbjct: 153 SVFSGSALLDMYAKCGCLDEAIRTFNEM-PEKNS-ITWNAVISAYAQYGQAKNAIRMFDS 210
Query: 242 LL 243
+L
Sbjct: 211 ML 212
>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 874
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 178/367 (48%), Gaps = 45/367 (12%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S ++ +L C L G + AY K+ L AVG+ L+++ ++CG ++ + F
Sbjct: 508 NSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVF 567
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFK-----DKQWRYTSMNPTTFRSALKAYAL 159
+ +N ++W +I A HG EAL LF+ R N T+ + + +
Sbjct: 568 EQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSH 627
Query: 160 MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIW 219
G+V E LF +M+ + IEP+ +HY+ +V+ LGR+G EE IK + W
Sbjct: 628 SGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAW 687
Query: 220 RTLLLSSRVHGDMKLAKYALDKLLELDPGMY---------------------VGC-WIEI 257
+LL + ++H ++++ + A L LDP + GC WIE
Sbjct: 688 SSLLGACKIHQNLEIGEIAAKNLFVLDPNVLDYGTKQSMLGRKMKEKGVRKEPGCSWIEH 747
Query: 258 QNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRSLY---------------QT 299
+++++F++ + + EV + L + MK+ G+V + S +
Sbjct: 748 GDEVHKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVGEEEKETMLCGHS 807
Query: 300 KMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGK 359
+ A+A GL++ G RV K++ +C H A +F+S I++RE++++D FHHF++G
Sbjct: 808 ERLAIAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRFHHFRNGT 867
Query: 360 CSCKDAY 366
CSC D +
Sbjct: 868 CSCGDYW 874
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+++ +L + LN+G Q A++ K G AV N L+N+ +CG ID A F
Sbjct: 84 DNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVNMYGKCGDIDAARRVF 143
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
++ +SW +I+A A+ LF + ++ PT+F A+A L+
Sbjct: 144 DEITNRDDVSWNSMINAACRFEEWELAVHLF--RLMLLENVGPTSFTLVSVAHACSNLI 200
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 1/138 (0%)
Query: 14 WNLLLKACIKAK-DYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN ++ ++ + DYE + +E + +S ++ +L +C+ + +
Sbjct: 357 WNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCV 416
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K G V N L+++ SR G+I+ A F S K+ +SW +I+ V G +AL
Sbjct: 417 VKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDAL 476
Query: 133 DLFKDKQWRYTSMNPTTF 150
+L D Q TF
Sbjct: 477 NLLHDMQRGQAEHRINTF 494
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 71/155 (45%), Gaps = 2/155 (1%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL-LNVGTQAQ 69
++ WN ++ A + +++E+ L + L S+++ + ++C N I L +G Q
Sbjct: 151 DVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVH 210
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
A++ + G N L+ + ++ G++ +A F +K+ +SW IIS+ +
Sbjct: 211 AFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFE 269
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
EAL N T S L A + + ++G
Sbjct: 270 EALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLG 304
>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 611
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 164/347 (47%), Gaps = 54/347 (15%)
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
++ + G+ + N LI+ ++CG +D A F+ E+ +SWT +I A G E
Sbjct: 264 FVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKE 323
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+ +F++ + + F L A + G+V E F SM+ Y IEP EHY MV
Sbjct: 324 AVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMV 383
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM- 249
+ GRAGM E+ LEF++ + P K P+IWRTL+ + R HG ++L + LL P
Sbjct: 384 DMFGRAGMVEQGLEFVRAM-PMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEFPAHE 442
Query: 250 --YV-------------------------------GC-WIEIQNKIYEFVSNEE---LTS 272
YV GC +E+ +++EF++ +E
Sbjct: 443 ANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQYK 502
Query: 273 EVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPT 317
E+ + E+ ++ +G + S + ++ A+A L+ P G
Sbjct: 503 EIYRMVEEMSRELRRIGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQV 562
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
RV+K++ +C H+A + +S + RE+VV+D FH FKDG CSCKD
Sbjct: 563 RVVKNLRVCSDCHAAIKCISQVYNREIVVRDRSRFHRFKDGSCSCKD 609
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 45 DSYSICDILNSCLN-PILLNVGTQAQAYMTKRGLISHPAVGNCLININS--RCGKIDDAD 101
+ ++ +L SC P +VG QA A K G + V N LI++ S G + DA
Sbjct: 134 NKFTFPFLLKSCAALPGSPDVGLQAHAAALKFGFAADHYVSNTLIHMYSCFGAGFLGDAR 193
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
F+ P +++++W+ +I V G S+A+ LF+ Q
Sbjct: 194 NVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQ 231
>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
Length = 1145
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 188/405 (46%), Gaps = 55/405 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ AC +A E+ + + + +L N +G Q
Sbjct: 516 VSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLGQQIHTI 575
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G+ S V N L+++ +C D + F S E++ +W II+ HG EA
Sbjct: 576 AIKLGMDSGLVVANALVSMYFKCSSADSLKV-FDSMEERDIFTWNTIITGYAQHGLGREA 634
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ +++ N TF L A + GLV E ++ F SM Y + P EHY+ MV+
Sbjct: 635 IRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVD 694
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG + FI + P + +IW LL + ++H ++++ + A +KL ++P G
Sbjct: 695 LLGRAGDVQGAEHFIYDM-PIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAG 753
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEELTSEVSD 276
YV GC W++I+NK++ FV+ +E ++ +
Sbjct: 754 NYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQN 813
Query: 277 ---KLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPTR 318
L E+ +K G+V + LY ++ AVA GL+ P GMP +
Sbjct: 814 IYATLWELYTLLKATGYVPDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQ 873
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCK 363
++K++ +CG H+ +F+S++ +RE+ V+D FHHF++G CSC+
Sbjct: 874 IMKNLRICGDCHTFIKFVSSVTKREIDVRDGNRFHHFRNGSCSCE 918
>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
Length = 433
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 114/412 (27%), Positives = 190/412 (46%), Gaps = 62/412 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN +L A + E +R++ D ++ +L++ LL G +
Sbjct: 27 ISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATLVTMLSASAQLCLLEHGQSIHSI 86
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ L ++G L+++ ++CG I+ + L F++ P ++ +W +I +HG +A
Sbjct: 87 IDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMPRRDVSTWNVMICGLASHGLGKDA 146
Query: 132 LDLFKDKQWRYTSMNP--TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
L LF+ ++ ++P TF L A + GLV E F M + Y IEP EHY M
Sbjct: 147 LTLFE--RFLNEGLHPMNVTFVGVLNACSRAGLVKEGRHYFQMMTDSYGIEPEMEHYGCM 204
Query: 190 VEALGRAGMFEEVLEFIK--GIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
V+ LGRAG+ E ++ I+ I P P++W +L + R+HG +L + ++L+ELDP
Sbjct: 205 VDLLGRAGLVFEAIKVIESMAISPD---PVLWAMVLCACRIHGLAELGEKIGNRLIELDP 261
Query: 248 ---GMY------------------------------VGCW--IEIQNKIYEFVSN---EE 269
G Y V W IE + K++ FV+ E
Sbjct: 262 TYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKVAGWSLIEARGKVHRFVAGHREHE 321
Query: 270 LTSEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHG 314
+ E+ L IE + G+V N S ++ A+A GL+ G
Sbjct: 322 QSLEIQKMLEIIETRLAAAGYVPNVSPVLHDIGEEEKENAIKVHSERLAIAFGLLVTGPG 381
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C H + +S + ERE++V+D FHHFK+GKCSC D +
Sbjct: 382 SCIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGSRFHHFKEGKCSCLDYW 433
>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 658
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/357 (31%), Positives = 173/357 (48%), Gaps = 58/357 (16%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Y+ +RGL S V + L+ + +RCG ++ F+ +++ +SW +IS+
Sbjct: 305 GKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGI 364
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
HG +A+ +FK+ + S +P +F S L A + GLV E LF SM + I PS E
Sbjct: 365 HGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVE 424
Query: 185 HYSIMVEALGRAGMFEEVLEFIKG--IVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
HY+ MV+ LGRA +E + I I PG P +W +LL S R+H +++LA+ A +L
Sbjct: 425 HYACMVDLLGRANRLDEAAKIIDDMRIEPG---PKVWGSLLGSCRIHCNVELAERATSRL 481
Query: 243 LELDP---GMYV---------GCW-----------------------IEIQNKIYEFVSN 267
EL+P G YV W IEI+ KIY F+S
Sbjct: 482 FELEPTNAGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSCIEIRRKIYSFMSV 541
Query: 268 EELTSEVSD---KLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLI 309
+E ++ L ++ MKE G+V + L ++ A+A GLI
Sbjct: 542 DEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVLYDLDPEEKERIVLGHSEKLALAFGLI 601
Query: 310 SFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ G R+ K++ +C HS +F+S RE++V+D FH F+DG CSC D +
Sbjct: 602 NSKKGETIRITKNLRLCEDCHSVTKFISKFANREILVRDVNRFHLFQDGVCSCGDYW 658
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP-----ILLNVGTQA 68
WN L +A A V +L R+ D ++ +L +C+ +LLN G +
Sbjct: 147 WNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLN-GREI 205
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
++ + G H + L+++ +R G + +A F P KN +SW+ +I+ +G P
Sbjct: 206 HGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKP 265
Query: 129 SEALDLFKDKQWRYTSMNPTT 149
EAL+LF+ + P +
Sbjct: 266 LEALELFRKMMLENQDLLPNS 286
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/375 (28%), Positives = 173/375 (46%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ ++ +C ++ Y+ ++ +G +I+++++CG ++ A F
Sbjct: 936 DKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIF 995
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
EKN +SW+ +I+A HG +ALDLF N T S L A + GLV
Sbjct: 996 DRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVE 1055
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E R F M E Y + +HY+ +V+ LGRAG +E L+ I + K L W L
Sbjct: 1056 EGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGL-WGAFLG 1114
Query: 225 SSRVHGDMKLAKYALDKLLEL---DPGMYV------------------------------ 251
+ R H D+ LA+ A LLEL +PG Y+
Sbjct: 1115 ACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKI 1174
Query: 252 --GCWIEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGFVLNRS----------- 295
WIE+ NK ++F + + E+ + L + ++ +G+V + +
Sbjct: 1175 PGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELK 1234
Query: 296 ---LYQTKMK-AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
LY K A+A GLI+ P P R+IK++ +CG H+ C+ +S I R ++V+D
Sbjct: 1235 IGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANR 1294
Query: 352 FHHFKDGKCSCKDAY 366
FHHFK+G CSC D +
Sbjct: 1295 FHHFKEGACSCGDYW 1309
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 146/332 (43%), Gaps = 54/332 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ ++ +C ++ Y+ ++ +G +I++ ++CG ++ A F
Sbjct: 260 DKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIF 319
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
EKN +SW+ +I+A HG +ALDLF + T S L A + GLV
Sbjct: 320 DRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVE 379
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E R F SM E Y + +HY+ +V+ LGRAG +E L+ IK + K L W L
Sbjct: 380 EGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGL-WGAFLG 438
Query: 225 SSRVHGDMKLAKYALDKLLEL---DPGMYV------------------------------ 251
+ R H D+ LA+ A LLEL +PG YV
Sbjct: 439 ACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKT 498
Query: 252 --GCWIEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGFVLNRS----------- 295
WIE+ NK ++F + + E+ + L + ++ +G+V + +
Sbjct: 499 PGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELK 558
Query: 296 ---LYQTKMK-AVALGLISFPHGMPTRVIKSV 323
LY K A+A GLI+ P P R+IK++
Sbjct: 559 IGILYTHSEKLAIAFGLIATPEHTPIRIIKNL 590
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 58/124 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W++++ K DY + C D+Y++ ++ +C + L +G
Sbjct: 802 VSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHI 861
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL V L+++ +C +I+DA F E++ ++WT +I G+ +E+
Sbjct: 862 VYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANES 921
Query: 132 LDLF 135
L LF
Sbjct: 922 LVLF 925
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 58/125 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W++++ K DY + C D+Y++ ++ +C + L +G
Sbjct: 126 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHI 185
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL V L+++ +C +I+DA F E++ ++WT +I G +E+
Sbjct: 186 VYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANES 245
Query: 132 LDLFK 136
L LF+
Sbjct: 246 LVLFE 250
>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 754
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/375 (28%), Positives = 178/375 (47%), Gaps = 58/375 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ +++ +++SC N L G Q GL + V + L+ + +CG I+DA F
Sbjct: 381 NDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLF 440
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P + +S+T ++S G E +DLF+ + N TF L A + GLV
Sbjct: 441 DEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVE 500
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTL 222
+ F SM++ + I ++HY+ M++ R+G +E EFI+ + CP + W TL
Sbjct: 501 KGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQM---PRCPDAIGWATL 557
Query: 223 LLSSRVHGDMKLAKYALDKLLELD---PGMYV---------------------------- 251
L + R+ GDM++ K+A + LL+ D P YV
Sbjct: 558 LSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVK 617
Query: 252 ---GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGF------VLNRSLYQ 298
GC WI+ +N+++ F ++++ + + +KL + M E G+ VL+
Sbjct: 618 KEPGCSWIKYKNRVHIFSADDQSHPFSGTIYEKLQWLNSKMAEEGYKPDVSSVLHDVADA 677
Query: 299 TKMK---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
K+ A+A GLI P MP RV+K++ +C H+A +F+S I R+++V+D
Sbjct: 678 EKVHMLSNHSEKLAIAFGLIFVPEEMPIRVVKNLRVCVDCHNATKFISKITGRDILVRDA 737
Query: 350 GSFHHFKDGKCSCKD 364
FH F +G CSC D
Sbjct: 738 VRFHKFSNGICSCGD 752
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 1/198 (0%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
+++ I W ++ + ++ R++ ID Y+ IL +C
Sbjct: 240 AMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEE 299
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Q AY + + VG+ L+++ S+C I A+ F+ KN +SWT +I
Sbjct: 300 GKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQ 359
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
+G EA+ +F + Q N T S + + A + + E + F M V + P
Sbjct: 360 NGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQ-FHCMALVSGLRPYIT 418
Query: 185 HYSIMVEALGRAGMFEEV 202
S +V G+ G E+
Sbjct: 419 VSSALVTLYGKCGSIEDA 436
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I RC +++A F++ +++S++WT +++ +G SEALD+F+ +
Sbjct: 219 NTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVG 278
Query: 145 MNPTTFRSALKA 156
++ TF S L A
Sbjct: 279 IDQYTFGSILTA 290
>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Glycine max]
Length = 673
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 195/408 (47%), Gaps = 55/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN+++ +K +L ++ C D+ + +L +C + L +G + Y
Sbjct: 268 VSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEY 327
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ ++ L + + N LI++ +RCG ++DA F ++ SWT +ISA G A
Sbjct: 328 VERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNA 387
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF + Q S + F + L A + GL+ E F M + Y I P EH++ +V+
Sbjct: 388 VALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVD 447
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGR+G +E IK + P K +W LL S RV+ +M + A DKLL+L P G
Sbjct: 448 LLGRSGRVDEAYNIIKQM-PMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESG 506
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNEEL---TSE 273
YV G W +E+ N+++ F++ + + E
Sbjct: 507 YYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKE 566
Query: 274 VSDKLAEIEENMKELGFV--LNRSLYQTKMK-------------AVALGLISFPHGMPTR 318
+ ++L+ + MKELG+V + +L+ + + A+ +++ P R
Sbjct: 567 IYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVHSEKLAIVFAILNTQES-PIR 625
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +CG H A + +S I++RE+V++D FHHFKDG CSC D +
Sbjct: 626 ITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDGICSCGDYW 673
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y+ +L +C L +G Q + K GL + VGN LI + +CG + +A
Sbjct: 132 DHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVL 191
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
K+ +SW +++ + +ALD+ ++ + T S L A
Sbjct: 192 DEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPA 243
>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Vitis vinifera]
Length = 611
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/414 (26%), Positives = 186/414 (44%), Gaps = 64/414 (15%)
Query: 11 EIPWNLLLKACIKAKDYE-----MVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
++ WN ++ ++ D E ++ L R+Q + L +C + L G
Sbjct: 204 DVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQAT-----EVTYSSALRACASLAALEPG 258
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Q + K V N LI++ ++CG I DA L F +++ +SW +IS H
Sbjct: 259 LQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMH 318
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
G EAL +F Q + TF L A A GL+ + F SM + + IEP EH
Sbjct: 319 GLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEH 378
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
Y+ MV LGR G ++ ++ I I P + ++WR LL + +H D++L + + ++LE+
Sbjct: 379 YTCMVWLLGRGGHLDKAVKLIDEI-PFQPSVMVWRALLGACVIHNDIELGRISAQRVLEM 437
Query: 246 DP----------GMYVGC-------------------------WIEIQNKIYEFVSNEEL 270
+P MY WIE Q ++ F +
Sbjct: 438 EPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTS 497
Query: 271 TSEV---SDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFP 312
EV + L + K+ G++ N ++ ++ A++ G+I P
Sbjct: 498 HPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTP 557
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G P R++K++ +C H+A + +S +++RE+VV+D FHHF++G CSC D +
Sbjct: 558 SGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 59/114 (51%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ +L +C LN+G Q ++ K GL S V N L+++ ++CG+++++ F
Sbjct: 137 NQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELF 196
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+P +N ++W +I V G +AL LF + T+ SAL+A A
Sbjct: 197 AESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACA 250
Score = 37.7 bits (86), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S++ + L C+ + G + KRG N L+N+ + + DA F
Sbjct: 37 NSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLF 96
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
PE+N++S+ +I EA++LF + R N TF S L+A A M
Sbjct: 97 DEMPERNTISFVTLIQGYAESVRFLEAIELFV-RLHREVLPNQFTFASVLQACATM 151
>gi|147835805|emb|CAN64107.1| hypothetical protein VITISV_013147 [Vitis vinifera]
Length = 497
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 114/390 (29%), Positives = 178/390 (45%), Gaps = 51/390 (13%)
Query: 23 KAKDYEMVHELLERIQLC-------------CGFIDSYSI-CDILNSCLNPILLNVGTQA 68
+ +++ +VH ++ + LC G Y + C +L+SC L VG +
Sbjct: 96 QTENFTVVHSGVDLMGLCEEGKIREAVEYMGQGVCAEYGVFCAMLSSCGKTKSLEVGRRV 155
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
+ + + N LI + RCG + DA F E+N SW +I+ +G
Sbjct: 156 HDLLARSKFGGDVELNNKLIEMYGRCGSMRDARRVFDRMRERNMSSWHLMINGYAANGQG 215
Query: 129 SEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
+ L LF+ + R + P TF + L A G V E F M++ I P EHY
Sbjct: 216 RDGLLLFE--RMRKVGLRPVGETFVAVLSA---CGSVEEGLMYFELMKKECGIIPGIEHY 270
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+++ LG+ G E EF+ + P + +W L +R+HG ++L A + L LD
Sbjct: 271 LGVIDVLGKFGHINEAEEFVDKM-PIEPTAEVWEALRNFARIHGAIELEDRAEEMLAALD 329
Query: 247 PGMYVGCWI--------------EIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVL 292
P + I E +N++ E+ S + +KL + M+E G+V
Sbjct: 330 PSKAITDKIPTPPQKKQLAVNMLEGKNRVSEYRSTNPYKGDAYEKLKGLNGQMREAGYVP 389
Query: 293 NRS---------------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMS 337
+ LY ++ A+A GLIS P P R+IK++ +CG H+A + MS
Sbjct: 390 DTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMS 449
Query: 338 TIIERELVVKDPGSFHHFKDGKCSCKDAYG 367
I+ REL+V+D FHHFKDGKCSC D G
Sbjct: 450 KIVGRELIVRDNKRFHHFKDGKCSCGDYCG 479
>gi|449446817|ref|XP_004141167.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15690-like [Cucumis sativus]
Length = 458
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 156/351 (44%), Gaps = 31/351 (8%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D +LNSC N LL G + + + N LI + S CG + DA
Sbjct: 107 VDYGVFTALLNSCCNLKLLEAGRRVDGLLKGTKFRGDLELNNRLIEMYSNCGCMKDARKV 166
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F K++ SW +I ++G L LF+ + N TF L A A+ V
Sbjct: 167 FDKMANKDTSSWNLMIKGYGDNGEGDNGLALFEQMKNAGLQPNSETFLVVLAACAMAEAV 226
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E F M Y I P EHY +V+ LG++G E EFI+ + P IW L
Sbjct: 227 KEGVFYFKIMANEYGINPEIEHYLGVVDVLGKSGHLIEAEEFIEKM-PINPTAKIWDALR 285
Query: 224 LSSRVHGDMKLAKYALDKLLELDPGMYVGC---------------WIEIQNKIYEFVSNE 268
+R+HG+M+L A + + LDP +E ++++ EF
Sbjct: 286 NYARLHGNMELEDRAEELMFSLDPSTTSTTIKPSLPPRRKQSSTNMLEEKDRVREFRCAM 345
Query: 269 ELTSEVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPH 313
E +L + M+E G+V + Y ++ A+A GLIS P
Sbjct: 346 PYKEEGEGRLKGLNGQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPA 405
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
R+IK++ +CG H+A + MS I+ REL+V+D FHHFKDGKCSC D
Sbjct: 406 RTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSCGD 456
>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25060, mitochondrial-like [Vitis vinifera]
Length = 678
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 120/382 (31%), Positives = 180/382 (47%), Gaps = 69/382 (18%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKR---GLISHPAVGNCLININSRCGKIDDAD 101
DS S+ +L +C L +G Y+ +R +S AV I++ S+CG + A
Sbjct: 306 DSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFDCVSSTAV----IDMYSKCGSLSFAR 361
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP--TTFRSALKAYAL 159
F ++S+SW II++ HG EAL LF Q R T++ P TF S L A++
Sbjct: 362 TVFDQISFRDSISWNAIIASYGIHGSGEEALSLFL--QMRETNVKPDHATFASLLSAFSH 419
Query: 160 MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIV--PGKLCPL 217
GLV + F M Y I+PSE+HY+ MV+ L RAG EE E I+ ++ PG
Sbjct: 420 SGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPG---IA 476
Query: 218 IWRTLLLSSRVHGDMKLAKYALDKLLEL---DPGMY---------VGCW----------- 254
IW LL HG + + A K+LEL DPG+Y W
Sbjct: 477 IWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMK 536
Query: 255 ------------IEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELG------FVLN 293
+E+ K++ F+ ++ E+ L +++ MK +G FVL+
Sbjct: 537 KTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGYVPKTEFVLH 596
Query: 294 RSLYQTKMK---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIEREL 344
+ K + A+A GL++ G + K++ +CG H A +F+S I+ RE+
Sbjct: 597 NLEEEVKERMLCNHSERLAIAFGLLNTGPGTRLLITKNLRVCGDCHEATKFISKIVNREI 656
Query: 345 VVKDPGSFHHFKDGKCSCKDAY 366
VV+D FHHFKDG CSC D +
Sbjct: 657 VVRDVKRFHHFKDGVCSCGDYW 678
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 53/117 (45%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS + +L +C + L G + +G VG ++N+ ++CGK+D+A F
Sbjct: 104 DSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVF 163
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
++ + WT +I+ +G EA+D+++ + + ++A +G
Sbjct: 164 DKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLG 220
>gi|293334013|ref|NP_001167864.1| pentatricopeptide repeat (PPR) superfamily protein [Zea mays]
gi|223944527|gb|ACN26347.1| unknown [Zea mays]
gi|413946729|gb|AFW79378.1| pentatricopeptide repeat (PPR) superfamily protein [Zea mays]
Length = 578
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/346 (30%), Positives = 171/346 (49%), Gaps = 35/346 (10%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + ++ +C NP LL + + + V N L+ + ++C + A F
Sbjct: 240 DPAAFYELAAACSNPKLLEELRKVHDFFLRSPFRGDLRVNNKLLKMYAKCAAMPHARRTF 299
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGL 162
+ P+++ SW +I +G EAL LF + M+PT T+ L A A
Sbjct: 300 DNMPDRDMDSWHIVIDGYSVNGLGDEALRLF---ELMKECMSPTSHTYLLVLNACANSEA 356
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
+ EA F +M + IEP EHY ++E LG++G E LEFI+ + P + ++W +L
Sbjct: 357 IEEALLYFDAMHRDHGIEPGVEHYVGIIEVLGKSGHLNEALEFIEKL-PFEPNAMVWESL 415
Query: 223 LLSSRVHGDMKLAKYALDKLLELDPG-------------MYVGC-WIEIQNKIYEF---- 264
L +R++GD+ L A + L+ LDP +G ++ +NK+ E+
Sbjct: 416 LNLARMNGDIDLEDRAEELLVSLDPSKSNHKKLPTPPPKRRLGINMLDGRNKLVEYRLPP 475
Query: 265 ------VSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPHGMPTR 318
V+ + + L +I++ KE LY ++ A+A GLIS P P R
Sbjct: 476 KIEKKVVNEQRYVPDTRYVLHDIDQEAKEQAL-----LYHSERLAIAYGLISTPARTPLR 530
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+IK++ +CG H+A + MS I+ REL+V+D FHHFKDGKCSC D
Sbjct: 531 IIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGD 576
>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Glycine max]
Length = 703
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/408 (25%), Positives = 187/408 (45%), Gaps = 53/408 (12%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W +L A ++ +E L +++L + ++ +LN+C + + L G
Sbjct: 296 VAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGR 355
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G +H VGN LIN+ S+ G ID + F + ++ ++W +I +HG +A
Sbjct: 356 IVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQA 415
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L +F+D N TF L A + LV E + F + + + +EP EHY+ MV
Sbjct: 416 LLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVA 475
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG+ +E F+K K + WRTLL + +H + L K + ++++DP G
Sbjct: 476 LLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVG 535
Query: 249 MYV--------------------------------GCWIEIQNKIYEFV---SNEELTSE 273
Y W++I+N + FV SN +++
Sbjct: 536 TYTLLSNMHAKARKWDGVVKIRKLMKERNIKKEPGASWLDIRNNTHVFVSEGSNHPESTQ 595
Query: 274 VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
+ +K+ ++ +K LG+ + + + ++ A+A GL+ P P R
Sbjct: 596 IFEKVQQLLAMIKPLGYAPDVGVVLHDVEDEQKEGYLSHHSEKLALAYGLMKIPPPGPIR 655
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+IK++ MC H A + +S R ++V+D FHHF++G C+C D +
Sbjct: 656 IIKNLRMCDDCHIAVKLISKATNRLIIVRDANRFHHFREGLCTCNDHW 703
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 2/159 (1%)
Query: 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQA 68
D +N +L A +++ ++L+R+ C DS + +L C L +G Q
Sbjct: 192 DDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQI 251
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A + K GL+ V + LI+ +CG++ +A F ++N ++WT +++A + +GH
Sbjct: 252 HAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHF 311
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
E L+LF + T N TF L A A LV AY
Sbjct: 312 EETLNLFTKMELEDTRPNEFTFAVLLNACA--SLVALAY 348
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
Query: 12 IPWNLLLKACI-KAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ W+ L+ + K + E++ + L + + Y +L+ C + + G Q
Sbjct: 93 VSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHG 152
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ K GL+ H V N LI++ SRC +D A + P + S+ I+SA V G E
Sbjct: 153 YLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCRGE 212
Query: 131 ALDLFK 136
A + K
Sbjct: 213 AAQVLK 218
>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
Length = 673
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 186/377 (49%), Gaps = 62/377 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
++ ++ +L +C + + G + + + GL + VG ++++ S+CG+++ A AF
Sbjct: 300 NAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAF 359
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ EKN LSW+ +I+ HG EAL++F + + N TF S L A + GL+
Sbjct: 360 RKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLD 419
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTL 222
E + +M++ + IE EHY MV+ LGRAG +E IK + K+ P IW L
Sbjct: 420 EGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEM---KVKPDAAIWGAL 476
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW---------------- 254
L + R+H +++LA+ ++ +L ELD G YV W
Sbjct: 477 LSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIE 536
Query: 255 -------IEIQNKIYEFVSNEELTS---EVSDKLAEIEENMKELGFVLNRS--------- 295
E++ KIY F ++ E+ L ++ E M+E G+V N
Sbjct: 537 KPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEE 596
Query: 296 -------LYQTKMKAVALGLI-SFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
++ K+ AVA L+ S P + +IK++ +C H+A +F++ I ERE++++
Sbjct: 597 EKESALRIHSEKL-AVAFALMNSVPRSV-IHIIKNLRVCSDCHTAMKFITKITEREIIIR 654
Query: 348 DPGSFHHFKDGKCSCKD 364
D FHHFKDG CSC+D
Sbjct: 655 DLQRFHHFKDGLCSCRD 671
>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
[Vitis vinifera]
Length = 1724
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 182/408 (44%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ A E ++ ++ +D +S L + N +L G Q
Sbjct: 1318 ITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGL 1377
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G S V N +++ +CG++ D ++ LSW +ISA HG +A
Sbjct: 1378 VIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKA 1437
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F + + TF S L A GLV E + SM + + P EH +++
Sbjct: 1438 RETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIID 1497
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGR+G FIK + P L WR+LL + R+HG+++LA+ + LLELDP
Sbjct: 1498 LLGRSGRLSHAEGFIKEM-PVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDS 1556
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEEL---TSE 273
YV C W+++++K++ F E+ S
Sbjct: 1557 AYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASR 1616
Query: 274 VSDKLAEIEENMKELGFVLNRSLYQTKMK---------------AVALGLISFPHGMPTR 318
+S KL E+ + KE G+V + S M A+A GLI+ P R
Sbjct: 1617 ISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLR 1676
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +CG HS +F+S I+ R++V++DP FHHF GKCSC D +
Sbjct: 1677 IFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1724
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 128/275 (46%), Gaps = 10/275 (3%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D +C +LN C N +GTQ A+ K A+GN LI++ ++ G+I+DA A
Sbjct: 332 MDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRA 391
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F EKN +SWT +IS HG+ A+ L+K + + N TF S L A + GL
Sbjct: 392 FDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLT 451
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E F +M Y+I+P EHYS MV+ R G+ EE + I K +W +L
Sbjct: 452 AEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKI-DIKHNASLWGAIL 510
Query: 224 LSSRVHGDMKLAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEE 283
+S ++G M L K A L + P V + IY + ++ KL E
Sbjct: 511 GASSIYGYMSLGKEAASNLFNMQPENSVN--YVVLASIYSAAGLWDDAWKIR-KLMEERS 567
Query: 284 NMKELGFVLNRSLYQTKMKAVALGLISFPHGMPTR 318
K G+ S +Q K++ L+ HG+ R
Sbjct: 568 TKKNAGY----SFFQATKKSIP--LLQVQHGVSRR 596
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 14/206 (6%)
Query: 48 SICDILNSCLNPI-LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
++ +L +C P LL G A++ G S V N LI + ++CG ++ ++ F
Sbjct: 1252 TMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDG 1311
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
K+ ++W +++A +HG EAL +F + + +++ +F L A A + ++ E
Sbjct: 1312 LGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEG 1371
Query: 167 YRLF-----LSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221
+L L E H+ + ++ G+ G +VL+ + P L W
Sbjct: 1372 QQLHGLVIKLGFESDLHVTNAA------MDMYGKCGEMHDVLKMLP--QPINRSRLSWNI 1423
Query: 222 LLLSSRVHGDMKLAKYALDKLLELDP 247
L+ + HG + A+ ++L+L P
Sbjct: 1424 LISAFARHGCFQKARETFHEMLKLGP 1449
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI------DSYSICDILNSC-LNPILLN 63
E W+ +L ++ YE E + L C + + + ++ +C + + +
Sbjct: 810 EASWSTMLSGYVRVGLYE------EAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMAD 863
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G Q ++ K G++ VG L++ G + +A F+ P+ N +SWT ++
Sbjct: 864 EGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYS 923
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
+ G+P E L++++ + S N TF + + L+
Sbjct: 924 DSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLL 960
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 59/125 (47%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + +E L ++ C + ++ L +C + L++G Q Q
Sbjct: 97 VSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGC 156
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + + V + L++ +S+CGK++DA F + E++ +SW +I G ++
Sbjct: 157 IQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDS 216
Query: 132 LDLFK 136
+F+
Sbjct: 217 FCMFR 221
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G + K GL S+ + N L+ + S G+ +DA+L F++ E++ +SW +++
Sbjct: 1064 LKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMAC 1123
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
V G + L + + MN TF SAL A
Sbjct: 1124 YVQDGKCLDGLKILAELLQMGKVMNHVTFASALAA 1158
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 16/226 (7%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
I WN ++ ++ K + + L E +Q+ ++ + L +C NP L A
Sbjct: 1115 ISWNSMMACYVQDGKCLDGLKILAELLQMG-KVMNHVTFASALAACSNPECLIESKIVHA 1173
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ G VGN L+ + + G + +A ++ P+ + ++W +I + P+E
Sbjct: 1174 LIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNE 1233
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYAL------MGLVGEAYRLFLSMEEVYHIEPSEE 184
A+ +K + + N T S L A + G+ A+ + E +++ S
Sbjct: 1234 AVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNS-- 1291
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
++ + G G+ G P+ W ++ ++ HG
Sbjct: 1292 ----LITMYAKCGDLNSSNYIFDGL--GNKSPITWNAMVAANAHHG 1331
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
IL C++ G ++ G S + LI + G + A F PE++
Sbjct: 36 ILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERS 95
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+SWT ++S +G +A LF D + N T+ SAL+A
Sbjct: 96 VVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRA 140
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
+G Q ++ + G +V N LI++ S +++A F E + +SW +ISA
Sbjct: 965 LGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYA 1024
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTT 149
+HG E+L F + + N TT
Sbjct: 1025 HHGLCRESLRCFHWMRHLHNETNSTT 1050
>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
Length = 674
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 186/377 (49%), Gaps = 62/377 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
++ ++ +L +C + + G + + + GL + VG ++++ S+CG+++ A AF
Sbjct: 301 NAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAF 360
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ EKN LSW+ +I+ HG EAL++F + + N TF S L A + GL+
Sbjct: 361 RKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLD 420
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTL 222
E + +M++ + IE EHY MV+ LGRAG +E IK + K+ P IW L
Sbjct: 421 EGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEM---KVKPDAAIWGAL 477
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW---------------- 254
L + R+H +++LA+ ++ +L ELD G YV W
Sbjct: 478 LSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIE 537
Query: 255 -------IEIQNKIYEFVSNEELTS---EVSDKLAEIEENMKELGFVLNRS--------- 295
E++ KIY F ++ E+ L ++ E M+E G+V N
Sbjct: 538 KPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEE 597
Query: 296 -------LYQTKMKAVALGLI-SFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
++ K+ AVA L+ S P + +IK++ +C H+A +F++ I ERE++++
Sbjct: 598 EKESALRIHSEKL-AVAFALMNSVPRSV-IHIIKNLRVCSDCHTAMKFITKITEREIIIR 655
Query: 348 DPGSFHHFKDGKCSCKD 364
D FHHFKDG CSC+D
Sbjct: 656 DLQRFHHFKDGLCSCRD 672
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 112/409 (27%), Positives = 188/409 (45%), Gaps = 54/409 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
E+ WN ++ +++ D + L + + C + +L +C + + +GTQ +
Sbjct: 309 EVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHS 368
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K VGN LI++ ++CG I +A L F E++ +SW +IS HG E
Sbjct: 369 LSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGE 428
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL F+ Q N TF S L A + GL+ F SM + Y IEP EHY+ MV
Sbjct: 429 ALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMV 488
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
LGR+G ++ ++ I+ I P + +WR LL + +H D+ L + ++L++DP
Sbjct: 489 WLLGRSGHLDKAVKLIEEI-PLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDE 547
Query: 248 -------GMYVGC-------------------------WIEIQNKIYEFVSNEELTSE-- 273
+Y WIE Q ++ F + +
Sbjct: 548 ATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMK 607
Query: 274 -VSDKLAEIEENMKELGFV--LN------------RSLY-QTKMKAVALGLISFPHGMPT 317
+S L + ++ G+V LN R L+ ++ A+A GLI P
Sbjct: 608 MISGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGLIRTPSRGHI 667
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C HSA + +S I++R+++++D FHHF+DG CSC D +
Sbjct: 668 RILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 82/167 (49%), Gaps = 1/167 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
IPW+ ++ ++ EL +++ + ++ +L SC + L +G Q +
Sbjct: 209 IPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCH 268
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL + V N L+++ ++CG++D++ F P +N ++W +I V G +A
Sbjct: 269 VLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKA 328
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF-LSMEEVY 177
L L+K+ + T+ S L+A A + + ++ LS++ +Y
Sbjct: 329 LSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIY 375
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 52/114 (45%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ +L +C+ +VG + K VG L+++ ++ G +D F
Sbjct: 141 NHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVF 200
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+ P+ + + W+F+IS EA++LF + + N TF S L++ A
Sbjct: 201 EEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCA 254
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 4/142 (2%)
Query: 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRG 76
L++ +++ + V +L R+ ++ + IL ++ + A + K G
Sbjct: 12 LIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSLHACIYKLG 71
Query: 77 LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
S+ VG LI+ + CG ++ A AF + K+ +SWT +++ + ++L LF
Sbjct: 72 HESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLF- 130
Query: 137 DKQWRYTSMNPT--TFRSALKA 156
+ R NP TF LKA
Sbjct: 131 -AEMRMVGFNPNHFTFAGVLKA 151
>gi|225444971|ref|XP_002279824.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15690-like [Vitis vinifera]
Length = 476
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 113/387 (29%), Positives = 177/387 (45%), Gaps = 51/387 (13%)
Query: 23 KAKDYEMVHELLERIQLC-------------CGFIDSYSI-CDILNSCLNPILLNVGTQA 68
+ +++ +VH ++ + LC G Y + C +L+SC L VG +
Sbjct: 94 QTENFTVVHSGVDLMGLCEEGKIREAVEYMGQGVCAEYGVFCAMLSSCGKTKSLEVGRRV 153
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
+ + + N LI + RCG + DA F E+N SW +I+ +G
Sbjct: 154 HDLLARSKFGGDVELNNKLIEMYGRCGSMRDARRVFDRMRERNMSSWHLMINGYAANGQG 213
Query: 129 SEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
+ L LF+ + R + P TF + L A G V E F M++ I P EHY
Sbjct: 214 RDGLLLFE--RMRKVGLRPVGETFVAVLSA---CGSVEEGLMYFELMKKECGIIPGIEHY 268
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+++ LG+ G E EF+ + P + +W L +R+HG ++L A + L LD
Sbjct: 269 LGVIDVLGKFGHINEAEEFVDKM-PIEPTAEVWEALRNFARIHGAIELEDRAEEMLAALD 327
Query: 247 PGMYVGCWI--------------EIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVL 292
P + I E +N++ E+ S + +KL + M+E G+V
Sbjct: 328 PSKAITDKIPTPPQKKQLAVNMLEGKNRVSEYRSTNPYKGDAYEKLKGLNGQMREAGYVP 387
Query: 293 NRS---------------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMS 337
+ LY ++ A+A GLIS P P R+IK++ +CG H+A + MS
Sbjct: 388 DTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMS 447
Query: 338 TIIERELVVKDPGSFHHFKDGKCSCKD 364
I+ REL+V+D FHHFKDGKCSC D
Sbjct: 448 KIVGRELIVRDNKRFHHFKDGKCSCGD 474
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 106/375 (28%), Positives = 174/375 (46%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L +C L+ G + ++ +RG S V L+++ ++CG + A L F
Sbjct: 771 DDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLF 830
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P+K+ +SWT +I+ HG +EA+ F + + + ++F L A + GL+
Sbjct: 831 DMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLN 890
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E ++ F SM +EP EHY+ +V+ L R G + +FI+ + P K IW LL
Sbjct: 891 EGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESM-PIKPDTTIWGVLLS 949
Query: 225 SSRVHGDMKLAKYALDKLLELDPG---MYV------------------------------ 251
R+H D+KLA+ + + EL+P YV
Sbjct: 950 GCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQN 1009
Query: 252 -GC-WIEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGF-------VLNRSLYQT 299
GC WIE+ K FV S + L ++ M+ + ++N +
Sbjct: 1010 PGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEK 1069
Query: 300 KM--------KAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+M A+A G+++ P G RV K+ +CG H +FMS +RE+V++D
Sbjct: 1070 EMIQCGHSEKSAMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNR 1129
Query: 352 FHHFKDGKCSCKDAY 366
FHHFKDG CSC+DA+
Sbjct: 1130 FHHFKDGLCSCRDAF 1144
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 68/131 (51%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W + A ++ Y L + +Q D Y++ I+++C L+ G +Y
Sbjct: 638 VSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSY 697
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G+ S+ V N LIN+ ++CG +++A L F P K+ +SW +I + P+EA
Sbjct: 698 VIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEA 757
Query: 132 LDLFKDKQWRY 142
L+LF D Q ++
Sbjct: 758 LELFLDMQKQF 768
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 64/147 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ C+ E+ ++ + +D ++ +L + N L++G +
Sbjct: 537 VSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGF 596
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K N L+++ S+CG ++ A F + +SWT I+A V G S+A
Sbjct: 597 GVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDA 656
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
+ LF + Q + + T S + A A
Sbjct: 657 IGLFDEMQSKGVRPDIYTVTSIVHACA 683
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
S C +L C L G + + + G+ A+G L+ + CG + F
Sbjct: 371 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKI 430
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
W ++S G+ E++ LFK Q N TF LK +A +G V E
Sbjct: 431 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECK 490
Query: 168 RL 169
R+
Sbjct: 491 RV 492
>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Glycine max]
Length = 674
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 111/416 (26%), Positives = 200/416 (48%), Gaps = 59/416 (14%)
Query: 4 CSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLN 63
CSL++ WN L+ + +E V + +++ D + +++SC +L
Sbjct: 265 CSLVA-----WNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAILC 319
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G Q A K G S +V + L+++ SRCG + D+ F E++ + W+ +I+A
Sbjct: 320 QGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYG 379
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
HG EA+ LF + + N TF S L A + GL + LF M + Y ++
Sbjct: 380 FHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARL 439
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
+HY+ +V+ LGR+G EE I+ + P K +IW+TLL + ++H + ++A+ D++L
Sbjct: 440 QHYTCLVDLLGRSGCLEEAEAMIRSM-PVKADAIIWKTLLSACKIHKNAEIARRVADEVL 498
Query: 244 ELDP----------GMYVGC-------------------------WIEIQNKIYEFVSNE 268
+DP +Y W+E++N++++F +
Sbjct: 499 RIDPQDSASYVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQFHMGD 558
Query: 269 ELTS---EVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLIS 310
E E++ L E+ +K G+V + S + ++ A+A L++
Sbjct: 559 ECHPKHVEINQYLEELTSEIKRQGYVPDTSSVLHDMDNEEKEQILRHHSEKLAIAFALMN 618
Query: 311 FPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P G+P RV+K++ +C H A +++S I + E++V+D FHHFK+G CSC D +
Sbjct: 619 TPEGVPIRVMKNLRVCSDCHVAIKYISEIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 7/138 (5%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ K + E L R+ D YS+ +L C + L G Q AY+
Sbjct: 169 WNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVM 228
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G + VG L ++ + G + D + P+ + ++W ++S + G+ LD
Sbjct: 229 KCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLD 288
Query: 134 LFKDKQWRYTSMNPTTFR 151
+Y M FR
Sbjct: 289 -------QYCMMKMAGFR 299
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Query: 51 DILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK 110
++L +C+ +++G Q + + G S + N L+N+ S+ G++ A F P +
Sbjct: 74 NLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMPRR 133
Query: 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF 170
N +S +I A + G+ A +LF + R N T+ + + + EA LF
Sbjct: 134 NIMSCNIMIKAYLGMGNLESAKNLFDEMPDR----NVATWNAMVTGLTKFEMNEEALLLF 189
Query: 171 LSMEEV 176
M E+
Sbjct: 190 SRMNEL 195
>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 999
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/409 (26%), Positives = 182/409 (44%), Gaps = 67/409 (16%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN L+ ++ +E + ++ I+S++ +++ N + +G Q
Sbjct: 605 NVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHG 664
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K G S V N LI + ++CG IDD +SW +I+ HG E
Sbjct: 665 MIRKTGYDSETEVSNALITLYAKCGTIDD-------------ISWNSMITGYSQHGCGFE 711
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL LF+D + N TF L A + +GLV E F SM E +++ P EHY+ +V
Sbjct: 712 ALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVV 771
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGR+G+ F++ + P + ++WRTLL + VH ++ + ++A LLEL+P
Sbjct: 772 DLLGRSGLLSRAKRFVEEM-PIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDS 830
Query: 248 -------GMYV-------------------------GCWIEIQNKIYEFVS---NEELTS 272
MY W+E+ N ++ F + N
Sbjct: 831 ATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRAD 890
Query: 273 EVSDKLAEIEENMKELGFV--LNRSLYQTKMK-------------AVALGLISFPHGMPT 317
+ + L ++ E G+V N L +++ A+A GL+S P
Sbjct: 891 MIYEYLRGLDFRAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIAFGLLSLTSSTPL 950
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V K++ +C H+ + +S I +R ++V+D FHHFK G CSCKD +
Sbjct: 951 YVFKNLRVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDYW 999
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + + L + +Q D+ +++C L+ G Q A
Sbjct: 505 VSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQ 564
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
G ++GN L+++ +RCGK+ +A AF K+++SW ++S G+ EA
Sbjct: 565 SCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEA 624
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L++F +N TF SA+ A A
Sbjct: 625 LNIFAQMNKAGLEINSFTFGSAVSAAA 651
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 99/254 (38%), Gaps = 65/254 (25%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDS------------------- 46
+ SD+ + +LL +K D + HE LC G +D+
Sbjct: 383 MTSDIVVEGSLL-DLYVKCSDIKTAHEFF----LCYGQLDNLNKSFQIFTQMQIEGIVPN 437
Query: 47 -YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK 105
++ IL +C ++G Q + K G + V + LI++ ++ GK+D A F+
Sbjct: 438 QFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFR 497
Query: 106 STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA--------- 156
E + +SWT +I+ H +EAL+LFK+ Q + + F SA+ A
Sbjct: 498 RLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQ 557
Query: 157 --------------------------YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
YA G V EAY F +++Y ++ +V
Sbjct: 558 GRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAF---DQIY--AKDNVSWNSLV 612
Query: 191 EALGRAGMFEEVLE 204
++G FEE L
Sbjct: 613 SGFAQSGYFEEALN 626
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L++C G Q + K+G S V N L+ + SR G + A+ F +++
Sbjct: 257 VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRD 316
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+S+ +IS G+ + AL LFK + T S L A A +G
Sbjct: 317 RVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVG 366
>gi|242055215|ref|XP_002456753.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
gi|241928728|gb|EES01873.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
Length = 521
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/373 (27%), Positives = 172/373 (46%), Gaps = 54/373 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ +L+SC L+VG A GL +VGN L+++ ++ G + DA F
Sbjct: 148 DEFAVAAVLSSCAGSTALDVGRSVHAAAVHLGLCPFRSVGNSLVSMYAKTGALHDARAVF 207
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ P + +++WT +I +G +L+++ D + TF L A + GLV
Sbjct: 208 DAMPARCTITWTALIVGYAQNGRGRRSLEVYTDMVRSGCRPDYVTFIGLLFACSHAGLVD 267
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
F SM Y I P +HY+ MV+ LGRAG +E ++ + +L +W++LL
Sbjct: 268 AGRDHFRSMAVDYGIAPGPDHYACMVDLLGRAGRLDEAMDLLN-RSSTELDATVWKSLLG 326
Query: 225 SSRVHGDMKLAKYALDKLLELDPGMYV--------------------------------- 251
+ RVH + +LA+ A + + LDP V
Sbjct: 327 ACRVHRNAELAERAAEMVWRLDPTDAVPYVMLSNLYSRARRWGDVARIRALMKARGITKE 386
Query: 252 -GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLN------------- 293
GC W+ + + F + +E+ K+ E+ E ++ G+V +
Sbjct: 387 PGCSWVGVNGVTHLFHVEDRGHPRAAEIYRKVEEMTERIRAEGYVPDTDWALQDEAPEGR 446
Query: 294 -RSL-YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
R L Y ++ AVA GL++ P P RV K++ +CG H+A + ++ R ++++D
Sbjct: 447 ERGLAYHSERLAVAFGLLAVPAAAPIRVFKNLRVCGDCHTAIKMVAKAYGRVIILRDANC 506
Query: 352 FHHFKDGKCSCKD 364
FHH KDG+CSC D
Sbjct: 507 FHHMKDGECSCGD 519
>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1736
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 120/414 (28%), Positives = 197/414 (47%), Gaps = 66/414 (15%)
Query: 11 EIPWNLLLKACIKA----KDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
E+ WN ++ I K ++V ++++ Q +DS++ IL++C + L G
Sbjct: 657 EVSWNSMISGYIHNELLHKAMDLVWFMMQKGQR----LDSFTFATILSACASVATLERGM 712
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ A + L S VG+ L+++ S+CG+ID A F+ P +N SW +IS HG
Sbjct: 713 EVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHG 772
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
H +AL LF + TF L A + +G V E + F SM EVY + P EH+
Sbjct: 773 HGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHF 832
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS-SRVHG-DMKLAKYALDKLLE 244
S MV+ LGRAG +EV +FI + P K LIWRT+L + R +G + +L + A + LLE
Sbjct: 833 SCMVDLLGRAGKLDEVGDFINSM-PMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLE 891
Query: 245 LDP----------GMY------------------------VGC-WIEIQNKIYEFVSNEE 269
L+P MY GC W+ +++ ++ FV+ ++
Sbjct: 892 LEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDK 951
Query: 270 LTSE---VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISF 311
L E + DKL E+ M++ G++ Y ++ AVA +++
Sbjct: 952 LHPEKDLIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSEKIAVAF-VLTR 1010
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIEREL-VVKDPGSFHHFKDGKCSCKD 364
+P R++K++ +CG HSA ++S II L + P + + +C C D
Sbjct: 1011 QSALPIRIMKNLRVCGDCHSAFGYISKIIFFFLKMAMKPSNNIWIRRQQCPCGD 1064
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%)
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G + + + N LINI R G + A F +N ++W +IS +G P EA
Sbjct: 99 KYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACA 158
Query: 134 LFKDKQWRYTSMNPTTFRSALKA 156
F+D N F SAL+A
Sbjct: 159 RFRDMVRAGFIPNHYAFGSALRA 181
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 65 GTQAQAYMTKRGLISHP-AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G + A++ + GL + A+GN L+N+ ++ G I DA F+ EK+S+SW +IS
Sbjct: 405 GREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLD 464
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFR--SALKAYALMGLV 163
+ +A + F + R T P+ F S L + A +G +
Sbjct: 465 QNECSEDAAESF--HRMRRTGSMPSNFTLISTLSSCASLGWI 504
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 80/162 (49%), Gaps = 5/162 (3%)
Query: 1 LKLCSLISDV-EIPWNLLLKACI--KAKDYEMVHELLERIQLCCGFIDSYSICDILNSCL 57
LK+ SL+ + ++ WN ++ A +A + V L+ ++ G + + +IL++
Sbjct: 543 LKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWG-LSRVTFINILSAVS 601
Query: 58 NPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE-KNSLSWT 116
+ L V Q A + K L A+GN L++ +CG++++ + F E ++ +SW
Sbjct: 602 SLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWN 661
Query: 117 FIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+IS +++ +A+DL + ++ TF + L A A
Sbjct: 662 SMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACA 703
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 42 GFI-DSYSICDILNSCL--NPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC-GKI 97
GFI + Y+ L +C P +G Q ++K S V N LI++ C
Sbjct: 167 GFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSA 226
Query: 98 DDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
+DA F +NS+SW IIS G A DLF Q
Sbjct: 227 NDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQ 268
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 66/158 (41%), Gaps = 1/158 (0%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
++ + WN L+ + + E E R++ ++++ L+SC + + +G
Sbjct: 448 MVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLG 507
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN- 124
Q K GL + +V N L+ + + G + F PE + +SW +I A +
Sbjct: 508 EQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDS 567
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
S+A+ F ++ TF + L A + + L
Sbjct: 568 EASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSL 605
>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
Length = 606
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/371 (27%), Positives = 179/371 (48%), Gaps = 54/371 (14%)
Query: 49 ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP 108
+ ++L++C + ++G A + K + AV L+++ +CG + F++
Sbjct: 237 LVNVLSACTHLGAFHLGRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMT 296
Query: 109 EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYR 168
KN LS++ IIS HG+ +AL +F + + T+ S L A + GLV E
Sbjct: 297 RKNQLSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEGLD 356
Query: 169 LFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRV 228
LF M+ Y IEP+ +HY MV+ GRAG+ EE + ++ + P K ++WR+LL + +V
Sbjct: 357 LFDKMKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQSM-PIKANDVLWRSLLSACKV 415
Query: 229 HGDMKLAKYALDKLLEL---DPGMYV---------GCW---------------------- 254
H ++KL + A + L L +P Y+ W
Sbjct: 416 HDNLKLGEIAAENLFRLSSHNPSDYLVLSNMYARAQQWENAAKIRTKMINRGLIQTPGYS 475
Query: 255 -IEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSLY------------- 297
+E+++K+Y+FVS ++ + + + ++E ++ G++ + S
Sbjct: 476 LVEVKSKVYKFVSQDKSYCKSGNIYKMIHQMEWQLRFEGYMPDTSQVMLDVDEEEKGERL 535
Query: 298 --QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHF 355
++ A+A LI G R+I+++ MC HS + +S I ERE+ V+D FHHF
Sbjct: 536 KGHSQKLAIAFALIHTSQGSAIRIIRNLRMCNDCHSYTKLVSMIYEREITVRDRNRFHHF 595
Query: 356 KDGKCSCKDAY 366
KDG CSC+D +
Sbjct: 596 KDGNCSCRDYW 606
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/308 (19%), Positives = 126/308 (40%), Gaps = 61/308 (19%)
Query: 4 CSLISDVEIP----WNLLLKACIKAKDYE----MVHELLER-IQLCCGFIDSYSICDILN 54
CS+ ++ P +N +++ + ++E + +++L+R ++ D+++ +L
Sbjct: 86 CSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQREVE-----PDNFTYPVVLK 140
Query: 55 SCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLS 114
+C ++ G Q ++ K GL V N LIN+ +C I+ + F+ +K+ S
Sbjct: 141 ACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVAS 200
Query: 115 WTFIISARVNHGHPSEALDLFKDKQ----WR----------------------------- 141
W+ II+A + E L LF+D WR
Sbjct: 201 WSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSL 260
Query: 142 ---YTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGM 198
T +N S + Y G + + LF +M ++ YS+++ LG G
Sbjct: 261 LKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNM-----TRKNQLSYSVIISGLGLHGY 315
Query: 199 FEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKL---LELDPGM-YVG 252
+ L+ +V L P + + ++L + G + DK+ ++P M + G
Sbjct: 316 GRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPTMQHYG 375
Query: 253 CWIEIQNK 260
C ++++ +
Sbjct: 376 CMVDLKGR 383
>gi|242080213|ref|XP_002444875.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
gi|241941225|gb|EES14370.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
Length = 583
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 112/418 (26%), Positives = 191/418 (45%), Gaps = 55/418 (13%)
Query: 2 KLCSLISDVEI-PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
KL I D + WN ++ + E+ +++ DS + L++C
Sbjct: 164 KLFDAIRDRSVVAWNAMISGYEQNGLAGRAIEVYREMRVAGEAPDSATFVATLSACAQAG 223
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L++G + + + + + +G L+N+ +RCG ++ A F E+N ++WT +I+
Sbjct: 224 ALDLGHEVERLIVSERMEMNVVLGAALVNMYARCGLVNKAREWFDMLQERNVVTWTSMIA 283
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
HGH EA+ LF + + N TF + L A A GLV + F SM+ VY +
Sbjct: 284 GYGMHGHGGEAVKLFDLMRQQGPPPNDVTFVAVLSACAHAGLVSDGRDAFASMKSVYGLV 343
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
P EHY MV+ GRAG+ ++ ++FI +PG+ P +W +L + ++H + L +
Sbjct: 344 PRAEHYCSMVDMYGRAGLLDDAMQFIHDSIPGEPGPEVWTAMLGACKMHKNFSLGVEVAE 403
Query: 241 KLLELDP----------GMY------------------------VG-CWIEIQNKIYEFV 265
+L+ L+P +Y +G IEI + F
Sbjct: 404 RLIALEPENPSHRVLLSNIYALSGKMNHVEKVRNTMIKRRLKKPIGYSLIEIGGVAHVFR 463
Query: 266 SNEE---LTSEVSDKLAEIEENMKELGF------VLNRSL---------YQTKMKAVALG 307
E+ T E+ L ++ + + G+ VL+ Y + AVA G
Sbjct: 464 MGEKSHPKTPEIYQYLEKLIHRITDAGYMPETDSVLHELEEEEREFALRYHGEKLAVAFG 523
Query: 308 LISFPH-GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
L+ P R+IK++ +CG H A ++MS + RE++V+D FHHFK GKCSC++
Sbjct: 524 LMMTSGCTAPIRIIKNLRICGDCHLAIKYMSAVENREIIVRDMHRFHHFKAGKCSCQE 581
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 88/207 (42%), Gaps = 9/207 (4%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
S++ + +C + L G A+ G S V L+ + S+CGK+D A
Sbjct: 106 FSSFAFTSVAKACADLSALRAGMGVHAHAVLLGFGSDRFVQTALVVLYSKCGKLDVARKL 165
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG-- 161
F + +++ ++W +IS +G A++++++ + + + TF + L A A G
Sbjct: 166 FDAIRDRSVVAWNAMISGYEQNGLAGRAIEVYREMRVAGEAPDSATFVATLSACAQAGAL 225
Query: 162 -LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWR 220
L E RL +S +E + + +V R G+ + E+ + + + W
Sbjct: 226 DLGHEVERLIVSER----MEMNVVLGAALVNMYARCGLVNKAREWFDMLQERNV--VTWT 279
Query: 221 TLLLSSRVHGDMKLAKYALDKLLELDP 247
+++ +HG A D + + P
Sbjct: 280 SMIAGYGMHGHGGEAVKLFDLMRQQGP 306
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 109/408 (26%), Positives = 191/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN+++ + + L + +Q + ++ +L + L +G Y
Sbjct: 236 VSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLY 295
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + +G+ L+++ S+CG ID+A F++ P++N+++W+ II A HG +A
Sbjct: 296 AGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDA 355
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F + N + L A + GLV E F M +V ++P EHY MV+
Sbjct: 356 IIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVD 415
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG EE E I+ + P + +IW+ LL + ++H ++K+ + + L+EL P G
Sbjct: 416 LLGRAGHLEEAEELIRNM-PIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSG 474
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEELTS---E 273
YV GC WIEI I+EF+ ++ S E
Sbjct: 475 SYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKE 534
Query: 274 VSDKLAEIEENMKELGFVLN--------------RSL-YQTKMKAVALGLISFPHGMPTR 318
+ L E+ ++ G+ N R+L Y ++ AVA GLIS P +
Sbjct: 535 IQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLK 594
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +C H++ + +S I +R+++V+D FH F+ G CSC D +
Sbjct: 595 IVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 100/228 (43%), Gaps = 19/228 (8%)
Query: 17 LLKACIKA---KDYEMVHELLERIQ------LCCGFIDSYSICDILNSCLNPILLNV--- 64
+LKAC +A ++ + +H L+ + + + Y +C ++ + NV
Sbjct: 128 VLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDF 187
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
Q + KR + + N +I+ R G I A F P+++ +SW +IS
Sbjct: 188 DGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQ 247
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL--VGEAYRLFLSMEEVYHIEPS 182
+GH EA++LF++ Q N T S L A A +G +G+ L+ + IE
Sbjct: 248 NGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNK---IEID 304
Query: 183 EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
+ S +V+ + G +E L+ + + K + W ++ + +HG
Sbjct: 305 DVLGSALVDMYSKCGSIDEALQVFETL--PKRNAITWSAIIGAFAMHG 350
>gi|259490048|ref|NP_001159270.1| uncharacterized protein LOC100304360 [Zea mays]
gi|223943115|gb|ACN25641.1| unknown [Zea mays]
gi|413948667|gb|AFW81316.1| pentatricopeptide repeat (PPR) superfamily protein [Zea mays]
Length = 580
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 166/336 (49%), Gaps = 35/336 (10%)
Query: 55 SCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLS 114
+C NP LL + + + V N L+ + ++C + A F + P+++ S
Sbjct: 252 TCSNPKLLEELRKVHDFFLRSPFRGDLRVNNMLLAMYAKCAAMPHARRTFDNMPDRDMDS 311
Query: 115 WTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLS 172
W +I +G EAL LF + M PT T+ L A A + EA F +
Sbjct: 312 WHIMIDGYSVNGLGDEALRLF---ELMKECMAPTSQTYLLVLNACANSEAIEEALLYFDA 368
Query: 173 MEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDM 232
M + IEP EHY ++E LG++G E LEFI+ + P + ++W +LL +R++GD+
Sbjct: 369 MSRDHGIEPGVEHYVGIIEVLGKSGHLNEALEFIEKL-PFEPNAMVWESLLNLARMNGDI 427
Query: 233 KLAKYALDKLLELDPG-------------MYVGC-WIEIQNKIYEF----------VSNE 268
L A + L+ LDP +G ++ +NK+ E+ V+ +
Sbjct: 428 DLEDRAEELLVSLDPSKANPKKLPTPPPKRRLGINMLDGRNKLVEYRLPPKIEKKVVNEQ 487
Query: 269 ELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGY 328
+ L +I++ KE LY ++ A+A GLIS P P R+IK++ +CG
Sbjct: 488 RYVPDTRYVLHDIDQEAKEQAL-----LYHSERLAIAYGLISTPARTPLRIIKNLRICGD 542
Query: 329 SHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
H+A + MS I+ REL+V+D FHHFKDGKCSC D
Sbjct: 543 CHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGD 578
>gi|242089073|ref|XP_002440369.1| hypothetical protein SORBIDRAFT_09g030460 [Sorghum bicolor]
gi|241945654|gb|EES18799.1| hypothetical protein SORBIDRAFT_09g030460 [Sorghum bicolor]
Length = 642
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 107/348 (30%), Positives = 172/348 (49%), Gaps = 35/348 (10%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + ++ +C NP LL + + + S V N L+ + ++C + A F
Sbjct: 304 DPPAFYELAAACSNPKLLEELRKVHDFFLRSPFRSDLRVNNKLLEMYAKCAAMPHARRTF 363
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGL 162
+ P+++ SW +I +G EAL LF + M PT T+ L A A
Sbjct: 364 DNMPDRDMDSWHIMIDGYSVNGLGDEALRLF---ELMKECMAPTSQTYLLVLNACANSEA 420
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
+ EA F +M + IEP EHY ++E LG++G E LEFI+ + P + ++W +L
Sbjct: 421 IEEALLYFDAMSRDHGIEPGVEHYVGIIEVLGKSGHLNEALEFIEKL-PFEPNAMVWESL 479
Query: 223 LLSSRVHGDMKLAKYALDKLLELDPG-------------MYVGC-WIEIQNKIYEF---- 264
L ++++GD+ L A + L+ LDP +G ++ +NK+ E+
Sbjct: 480 LNLAQMNGDIDLEDRAEELLVSLDPSKANPKKLPTPPPKRRLGINMLDGRNKLVEYRLPP 539
Query: 265 ------VSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPHGMPTR 318
V+ + + L +I++ KE LY ++ A+A GLIS P P R
Sbjct: 540 KIEKKVVNEQRYVPDTRYVLHDIDQEAKEQAL-----LYHSERLAIAYGLISTPARTPLR 594
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+IK++ +CG H+A + MS I+ REL+V+D FHHFKDGKCSC D +
Sbjct: 595 IIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 642
>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 678
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 107/375 (28%), Positives = 175/375 (46%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y++ L+SC + L +G A+ M +S+P +G LI+ ++CG +++A +
Sbjct: 305 DCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVY 364
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
K EK+ + + +IS +G A +F N TF L GLV
Sbjct: 365 KMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVD 424
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ F SM + + P+ EHY MV+ L RAG +E IKG+ P K ++W +LL
Sbjct: 425 DGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGM-PMKANVIVWGSLLG 483
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
R+H + +LA++ L +L+EL+P G YV
Sbjct: 484 GCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKL 543
Query: 252 --GCWIEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELG------FVLNRSLYQTK 300
W+E+ ++EF+ ++ L+ ++ +KL + +++KE G FVL + K
Sbjct: 544 PGYSWVEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEEEK 603
Query: 301 MK---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
AVA LIS RV+K++ +CG H A + +S + RE+V++D
Sbjct: 604 EHFLGCHSEKLAVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNR 663
Query: 352 FHHFKDGKCSCKDAY 366
FH F DG CSC+D +
Sbjct: 664 FHCFSDGACSCRDYW 678
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 4/152 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ CI+ + +L + D + I +L +C L G
Sbjct: 171 VSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRC 230
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M + GL + V L+++ ++CG +++A F EK+ + W+ +I ++G P EA
Sbjct: 231 MRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREA 290
Query: 132 LDLFKDKQWRYTSMNPTTFR--SALKAYALMG 161
++LF + R ++ P + AL + A +G
Sbjct: 291 IELF--FEMRKVNVRPDCYAMVGALSSCASLG 320
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS++ +L +C L ++G + + K G V ++ S+CG + DA F
Sbjct: 103 DSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVF 162
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
KN +SWT +I + G EA+DLF+
Sbjct: 163 DDMVVKNVVSWTGMICGCIEFGKFREAVDLFR 194
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 176/375 (46%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L +C L+ G + ++ +RG S V L+++ ++CG + A L F
Sbjct: 496 DDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLF 555
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P+K+ +SWT +I+ HG +EA+ F + + + ++F + L A + GL+
Sbjct: 556 DMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLN 615
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E ++ F SM +EP EHY+ +V+ L R G + +FI+ + P K IW LL
Sbjct: 616 EGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESM-PIKPDTTIWGVLLS 674
Query: 225 SSRVHGDMKLAKYALDKLLELDPG---MYV------------------------------ 251
R+H D+KLA+ + + EL+P YV
Sbjct: 675 GCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQN 734
Query: 252 -GC-WIEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGF-------VLNRSLYQT 299
GC WIE+ K FV S ++ L+++ M+ + ++N +
Sbjct: 735 PGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEK 794
Query: 300 KM--------KAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+M A+A G+++ P G RV K+ +CG H +FMS + E+V++D
Sbjct: 795 EMIQCGHSEKSAMAFGILNLPPGRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNR 854
Query: 352 FHHFKDGKCSCKDAY 366
FHHFKDG CSC+DA+
Sbjct: 855 FHHFKDGLCSCRDAF 869
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 69/131 (52%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ A ++ Y L + +Q D Y++ I+++C L+ G +Y
Sbjct: 363 VSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSY 422
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G+ S+ V N LIN+ ++CG +++A L F P K+ +SW +I + P+EA
Sbjct: 423 VIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEA 482
Query: 132 LDLFKDKQWRY 142
L+LF D Q ++
Sbjct: 483 LELFLDMQKQF 493
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 66/147 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ C+ E+ ++ + +D ++ +L +C N L++G +
Sbjct: 262 VSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGF 321
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K N L+++ S+CG ++ A F + +SWT II+A V G S+A
Sbjct: 322 GVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDA 381
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
+ LF + Q + + T S + A A
Sbjct: 382 IGLFDEMQSKGVRPDIYTVTSIVHACA 408
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
S C +L C L G + + + G+ A+G L+ + CG + F
Sbjct: 96 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKI 155
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
W ++S G+ E++ LFK Q N TF LK +A +G V E
Sbjct: 156 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECK 215
Query: 168 RL 169
R+
Sbjct: 216 RV 217
>gi|356540347|ref|XP_003538651.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
chloroplastic-like [Glycine max]
Length = 753
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 111/408 (27%), Positives = 188/408 (46%), Gaps = 53/408 (12%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ W+ L+ ++ ++ E+ + I+ ++S+ +I +C L G Q A
Sbjct: 347 DFSWSALIAGYCQSGKFDRALEVFKTIRSKGVLLNSFIYNNIFQACSAVSDLICGAQIHA 406
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K+GL+++ + + +I + S+CGK+D A AF + + ++++WT II A HG SE
Sbjct: 407 DAIKKGLVAYLSGESAMITMYSKCGKVDYAHQAFLAIDKPDTVAWTAIICAHAYHGKASE 466
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL LFK+ Q N TF L A + GLV E + SM + Y + P+ +HY+ M+
Sbjct: 467 ALRLFKEMQGSGVRPNVVTFIGLLNACSHSGLVKEGKQFLDSMTDKYGVNPTIDHYNCMI 526
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ RAG+ E LE I+ + P + + W++LL ++++ A D + LDP
Sbjct: 527 DIYSRAGLLLEALEVIRSM-PFEPDVMSWKSLLGGCWSRRNLEIGMIAADNIFRLDPLDS 585
Query: 248 -------GMY------------------------VGC-WIEIQNKIYEFVSNEE---LTS 272
+Y V C WI ++ K++ FV + T
Sbjct: 586 ATYVIMFNLYALAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVHRFVVGDRHHPQTE 645
Query: 273 EVSDKLAEI-------------EEN-MKELGFVLNRSLYQTKMKAVALGLISFPHGMPTR 318
++ KL E+ EEN + + ++ L ++ A+A GLI P
Sbjct: 646 QIYSKLKELNVSFKKGEERLLNEENALCDFTERKDQLLDHSERLAIAYGLICTAADTPIM 705
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V K+ C H + +S + RELVV+D FHH G+CSC+D +
Sbjct: 706 VFKNTRSCKDCHEFAKRVSVVTGRELVVRDGNRFHHINSGECSCRDYW 753
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D + IL +C L G Q +Y K GL S +VG L++ +C + + A A
Sbjct: 279 LDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQA 338
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
F+S E N SW+ +I+ G AL++FK + + +N + + +A
Sbjct: 339 FESIHEPNDFSWSALIAGYCQSGKFDRALEVFKTIRSKGVLLNSFIYNNIFQA 391
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/372 (27%), Positives = 176/372 (47%), Gaps = 54/372 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ IL +C + L+ G + ++ + G S V N L+++ +CG A L F
Sbjct: 198 DGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLF 257
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P K+ ++WT +I+ HG + A+ F + + + +F S L A + GL+
Sbjct: 258 DMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLD 317
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E +R F M++ +++P EHY+ +V+ L R+G +FIK + P + IW LL
Sbjct: 318 EGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSM-PIEPDATIWGALLS 376
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
R+H D+KLA+ + + EL+P G YV
Sbjct: 377 GCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKN 436
Query: 252 -GC-WIEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGF-------VLNRSLYQT 299
GC WIE+++K++ F+ S+ ++ L + MKE G+ ++N Q
Sbjct: 437 PGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGYFPKTRYALINADSLQK 496
Query: 300 KMK--------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ A+A G+++ P RV K++ +CG H +F+S + RE+V++D
Sbjct: 497 ETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGDCHEMAKFISKTLGREIVLRDSNR 556
Query: 352 FHHFKDGKCSCK 363
FHHFKDG C C+
Sbjct: 557 FHHFKDGVCCCR 568
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++I +L++C L G Y+ + + S+ V N L+++ ++CG ++DA+ F
Sbjct: 98 DIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVF 157
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
P K+ +SW +I + P+EAL LF D
Sbjct: 158 LEMPVKDIISWNTMIGGYSKNSLPNEALSLFGD 190
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
IL +C N +++G K + N L+++ ++CG +D A L F +
Sbjct: 4 ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
++WT +I+A G EA+ LF + S + T + L A A G
Sbjct: 64 VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNG 113
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 110/414 (26%), Positives = 194/414 (46%), Gaps = 64/414 (15%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGTQAQAY 71
W ++ A ++ + + E ++CC I D ++ ++++C+N L+ Y
Sbjct: 315 WTTMISAYAESDHPQEALRVFE--EMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRY 372
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
GL S + N LIN+ ++CG +D A F+ P +N +SW+ +I+A HG S++
Sbjct: 373 THLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDS 432
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF + N TF L + GLV E ++F SM + Y+I P EHY MV+
Sbjct: 433 LSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVD 492
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM-- 249
GRA + E LE I+ + P +IW +L+ + RVHG+++L + A ++L+L+P
Sbjct: 493 LFGRANLLREALEVIESM-PMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDG 551
Query: 250 ----------------YVGC--W---------------IEIQNKIYEFV---SNEELTSE 273
YV W I++ K +EF+ + ++E
Sbjct: 552 ALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNE 611
Query: 274 VSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPT- 317
+ KL E+ +K G+V + L+ ++ A+ GL++
Sbjct: 612 IYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNKEKEEEKG 671
Query: 318 -----RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C H+ + +S + E E++V+D FH +KDG CSC+D +
Sbjct: 672 SCGVIRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDRTRFHRYKDGLCSCRDYW 725
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 2/139 (1%)
Query: 1 LKLCSLISDV--EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLN 58
L L S IS + I +N LL+ ++ + +RI+ G D S IL +
Sbjct: 67 LNLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSK 126
Query: 59 PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFI 118
L G + + K +S P V L+++ + CG+I+ A F +++ ++W +
Sbjct: 127 VSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTM 186
Query: 119 ISARVNHGHPSEALDLFKD 137
I G EA LF++
Sbjct: 187 IERYCRFGLLDEAFKLFEE 205
>gi|449488164|ref|XP_004157956.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15690-like [Cucumis sativus]
Length = 458
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 156/351 (44%), Gaps = 31/351 (8%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D +LNSC N LL G + + + N LI + S CG + DA
Sbjct: 107 VDYGVFTALLNSCCNLKLLEAGRRVDGLLKGTKFRGDLELNNRLIEMYSNCGCMKDARKV 166
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F K++ SW +I ++G L LF+ + N TF L A A+ V
Sbjct: 167 FDKMANKDTSSWNLMIKGCGDNGEGDNGLALFEQMKNVGLQPNSETFLVVLAACAMAEAV 226
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E F M Y I P EHY +V+ LG++G E EFI+ + P IW L
Sbjct: 227 KEGVFYFKIMANEYGINPEIEHYLGVVDVLGKSGHLIEAEEFIEKM-PINPTAKIWDALR 285
Query: 224 LSSRVHGDMKLAKYALDKLLELDPGMYVGC---------------WIEIQNKIYEFVSNE 268
+R+HG+M+L A + + LDP +E ++++ EF
Sbjct: 286 NYARLHGNMELEDRAEELMFSLDPSTTSTTIKPSLPPRRKQSSTNMLEEKDRVREFRCAM 345
Query: 269 ELTSEVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPH 313
E +L + M+E G+V + Y ++ A+A GLIS P
Sbjct: 346 PYKEEGEGRLKGLNGQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPA 405
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
R+IK++ +CG H+A + MS I+ REL+V+D FHHFKDGKCSC D
Sbjct: 406 RTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSCGD 456
>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
Length = 799
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 181/374 (48%), Gaps = 57/374 (15%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ +L +C + L+ G+ + Y G + + N LI++ ++CGKID A F
Sbjct: 428 TLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRM 487
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
++ +SW +I A HG EAL LF + Q + TF + A + GLV E
Sbjct: 488 HKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGK 547
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
F +M + + I P EHY+ MV+ L RAG+F+EV FI+ + P + +W LL + R
Sbjct: 548 YWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKM-PLEPDVRVWGALLSACR 606
Query: 228 VHGDMKLAKYALDKLLELDP---GMYV-------------------------------GC 253
V+ +++L + K+ +L P G +V GC
Sbjct: 607 VYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGC 666
Query: 254 -WIEIQNKIYEFV-----SNEELTSEVSDKLAEIEENMKELGFVLNRS------------ 295
WIEI ++ F+ S+ +LT ++S+KL E+ MK LG+ S
Sbjct: 667 SWIEISGVVHTFLGGGYRSHPQLT-QISNKLDELLVEMKRLGYQAESSYVFQDVEEEEKE 725
Query: 296 ---LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
LY ++ A+A G++S V K++ +CG H+A +F+S + +R++ V+D F
Sbjct: 726 RVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDCHTAIKFISLVTKRDITVRDASRF 785
Query: 353 HHFKDGKCSCKDAY 366
HHFKDG C+C D +
Sbjct: 786 HHFKDGICNCGDFW 799
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI---------DSYSICDILNSCLNPIL 61
E+ W+ ++ A Y + + E ++L C + + ++ ++ C N
Sbjct: 287 EVTWSAMVGA------YVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTD 340
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L+ GT Y K G + VGN L+++ ++CG I+ A F ++++S+T IIS
Sbjct: 341 LSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISG 400
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA-LMGL 162
V +G+ E L +F + Q + T S L A A L GL
Sbjct: 401 YVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGL 442
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
Query: 12 IPWNLLLKA-CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ + Y+ V LL ++Q +S +I +L + L G +
Sbjct: 186 VAWNSMISGFSLHEGSYDEVARLLVQMQNDVS-PNSSTIVGVLPAVAQVNSLRHGKEIHG 244
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP-EKNSLSWTFIISARVNHGHPS 129
+ +RG + VG ++++ +C ID A F KN ++W+ ++ A V
Sbjct: 245 FCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMR 304
Query: 130 EALDLF 135
EAL+LF
Sbjct: 305 EALELF 310
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 117/410 (28%), Positives = 188/410 (45%), Gaps = 62/410 (15%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+++ + L R+ + ++ +L++C L G +Y+
Sbjct: 171 WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIE 230
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
G+ + VG L+++ S+CG ++DA L F +K+ ++W +I G EAL
Sbjct: 231 NNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQ 290
Query: 134 LFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LFK ++PT TF L A G V E + +F M++ Y IEP EHY MV
Sbjct: 291 LFKSMC--RMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVN 348
Query: 192 ALGRAGMFEEVLEFIKG--IVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE---LD 246
LGRAG E+ E +K I P P++W TLL + R+HG + L + ++ L++ +
Sbjct: 349 LLGRAGHVEQAYELVKNMNIEPD---PVLWGTLLGACRLHGKIALGEKIVELLVDQNLAN 405
Query: 247 PGMY---------VGCW-----------------------IEIQNKIYEFVS---NEELT 271
G Y VG W IE+ NK++EF++ N
Sbjct: 406 SGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKR 465
Query: 272 SEVSDKLAEIEENMKELGF------VLN--------RSL-YQTKMKAVALGLISFPHGMP 316
E+ L EI +K G+ VL+ RSL ++ A+A GLI+ G
Sbjct: 466 KEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTT 525
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+++K++ +C H + +S I R++VV+D FHHF +G CSC D +
Sbjct: 526 IKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 575
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 9/156 (5%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
++++ IL C PI +QA K G S V L+++ +R G + A F
Sbjct: 74 NAFTFSSILKLC--PIEPGKALHSQA--VKLGFDSDLYVRTGLLDVYARGGDVVSAQQLF 129
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ PEK+ +S T +++ HG A LF + R + + + Y G+
Sbjct: 130 DTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEER----DGVCWNVMIDGYTQNGMPN 185
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
EA LF M + +P+E ++ A G+ G E
Sbjct: 186 EALVLFRRMLKA-KAKPNEVTVLSVLSACGQLGALE 220
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M ++ L+S A+ C ++ G++D A + F E++ + W +I +G P+EA
Sbjct: 132 MPEKSLVSLTAMLTCY----AKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEA 187
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF+ N T S L A +G + E+ R S E I+ + + +V+
Sbjct: 188 LVLFRRMLKAKAKPNEVTVLSVLSACGQLGAL-ESGRWVHSYIENNGIQFNVHVGTALVD 246
Query: 192 ALGRAGMFEE 201
+ G E+
Sbjct: 247 MYSKCGSLED 256
>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/408 (24%), Positives = 183/408 (44%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ K+ + L + C + Y+ +LN+C + +G Q Y
Sbjct: 285 VSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGY 344
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
MT+ G + + L+++ ++CG I+ A P+ + +SWT +I +G P EA
Sbjct: 345 MTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEA 404
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L F T + TF + L A GLV + F S+ E + + + +HY+ +V+
Sbjct: 405 LKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVD 464
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
L R+G FE++ I + P K +W ++L +G++ LA+ A +L +++P
Sbjct: 465 LLARSGRFEQLKSVISEM-PMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPV 523
Query: 248 ------GMYVGC-------------------------WIEIQNKIYEFV---SNEELTSE 273
+Y W EI+ K + F+ ++ + ++
Sbjct: 524 TYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQ 583
Query: 274 VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
+ + L E+ + MKE G+V SL Y ++ AVA ++S G +
Sbjct: 584 IVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIK 643
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V K++ C H A +F+S I +R++ V+D FH F++G+CSC D +
Sbjct: 644 VFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 81/201 (40%), Gaps = 6/201 (2%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
+ C+++ C L G + ++ G + + N L+ + ++CG + DA F
Sbjct: 87 TYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEM 146
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
P ++ SW +++ G EA LF + T + ++ + + Y EA
Sbjct: 147 PNRDLCSWNVMVNGYAEVGLLEEARKLFDE----MTEKDSYSWTAMVTGYVKKDQPEEAL 202
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLS 225
L+ M+ V + P+ SI V A E IV L ++W +L+
Sbjct: 203 VLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDM 262
Query: 226 SRVHGDMKLAKYALDKLLELD 246
G + A+ DK++E D
Sbjct: 263 YGKCGCIDEARNIFDKIVEKD 283
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 71/184 (38%), Gaps = 11/184 (5%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G + ++ + GL S + + L+++ +CG ID+A F EK+ +SWT +I
Sbjct: 237 GKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFK 296
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
E LF + N TF L A A + ++ M V +P
Sbjct: 297 SSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRV-GFDPYSF 355
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP----LIWRTLLLSSRVHGDMKLAKYALD 240
S +V+ + G E + G CP + W +L+ +G A D
Sbjct: 356 ASSSLVDMYTKCGNIESAKHVVDG------CPKPDLVSWTSLIGGCAQNGQPDEALKYFD 409
Query: 241 KLLE 244
LL+
Sbjct: 410 LLLK 413
>gi|242077973|ref|XP_002443755.1| hypothetical protein SORBIDRAFT_07g001380 [Sorghum bicolor]
gi|241940105|gb|EES13250.1| hypothetical protein SORBIDRAFT_07g001380 [Sorghum bicolor]
Length = 871
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 111/401 (27%), Positives = 181/401 (45%), Gaps = 53/401 (13%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN L+ + + + ++Q D +I I+ + N + + + A +
Sbjct: 476 WNALIAGSVHNGHSDRALRIFRQMQSLLVRPDYITILSIIPAFANLVAFSKVREIHACIF 535
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
L + N LIN S+ G + A F +N +SW II A + HG P EALD
Sbjct: 536 HNNLEMDGKIANALINAYSKSGDLAGACAVFDRHSSRNIISWNCIILAHLLHGSPCEALD 595
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
F + + + TT + +KAY L G V EA ++F +M Y+I P +HY+ +V+ L
Sbjct: 596 RFCEMKQEGVRPDHTTLTAVIKAYGLQGKVSEAKQIFYNMTHDYNIHPDLDHYAAIVDLL 655
Query: 194 GRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLELDPG--- 248
GR+G +E EFI + L P +W LL ++ +HG+ +LA A +L LDP
Sbjct: 656 GRSGSLQEAYEFIDNM---PLIPNLAVWEALLTAASIHGNARLANLAARELSLLDPSDPR 712
Query: 249 --------------------MYV-----------GCWIEIQNKIYEFVSNEELTSEVSDK 277
M V C +EI+NK+Y F +++ L E +
Sbjct: 713 IQRLVFNYWDLTGKSADVPLMTVYNKGRELEDVDSCSVEIKNKVYLFSTSDNLALE--NT 770
Query: 278 LAEIEENMKELGFVL------------NRSLYQTKMKAVALGLISFPHGMPTRVIKSVGM 325
+AE++ M ++ L S + A+A + + P R+IK++ M
Sbjct: 771 IAELKLIMIQIRMSLLCNGTDAEEEKEELSGIHCEKLAIAFAVSNSPPFRNIRIIKTLRM 830
Query: 326 CGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
C H + +S ER++++KD H FK+GKCSC+D +
Sbjct: 831 CSLCHVFAKLVSEKYERQILIKDSNCLHKFKNGKCSCEDYW 871
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 95/231 (41%), Gaps = 36/231 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQ-------------LCCGFIDS------------ 46
+ WN L+ + ++ + ++ E+LE+++ L GF+ S
Sbjct: 268 VTWNTLISSYARSGELDVAMEMLEQMEESGVAPDVVTWTSLVSGFVHSDRSGEALRCFMR 327
Query: 47 ----------YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGK 96
+I +++C + LL+ G + + K G +++ GN L+++ ++CG+
Sbjct: 328 MRLAGVEPNGMTIASAISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGE 387
Query: 97 IDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
I A F PEK+ SW +++ G+ +A +LF + N T+ +
Sbjct: 388 IVAAKRIFNEIPEKDIFSWNSMVAGYAQAGYCGKAYELFCKMESLGVRRNVITWNIMISG 447
Query: 157 YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK 207
Y G A+ LF M E Y ++ ++ ++ G + L +
Sbjct: 448 YIRNGDDERAFELF-QMMESYGVKRDTASWNALIAGSVHNGHSDRALRIFR 497
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 4/135 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA----VGNCLININSRCGKIDDA 100
D + I IL +C L +G + + G ++ A VGN ++ + +C ++ A
Sbjct: 161 DRFLITRILQACAYTEDLELGVAMHSLAIRSGFMAETARDVPVGNSVLAMYVKCRELGRA 220
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
+ F+ +++ +W +I EA L D + T T+ + + +YA
Sbjct: 221 RVVFEKMGQRDLGTWNSMIFGCCQSNEWEEARMLLDDMRREGTLPGVVTWNTLISSYARS 280
Query: 161 GLVGEAYRLFLSMEE 175
G + A + MEE
Sbjct: 281 GELDVAMEMLEQMEE 295
>gi|242078125|ref|XP_002443831.1| hypothetical protein SORBIDRAFT_07g002920 [Sorghum bicolor]
gi|241940181|gb|EES13326.1| hypothetical protein SORBIDRAFT_07g002920 [Sorghum bicolor]
Length = 688
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 107/406 (26%), Positives = 185/406 (45%), Gaps = 54/406 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L A + E EL + + +D ++ +L LL QA A
Sbjct: 282 VAWNSMLAAYVLHGRSEEALELYQEMCRSRVAMDQFTFSTMLGVFSRLGLLEHAKQAHAG 341
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ +RGL L+++ + G+++DA F+ P +N +SW +I+ HG +A
Sbjct: 342 LIQRGLPLDIVGNTALVDLYCKWGRMEDARNVFERMPRRNLISWNALIAGYGYHGMGDKA 401
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+++F+ N TF + L A GLV + R+F M E ++P HY+ ++E
Sbjct: 402 IEMFERLIAEGVVPNHVTFLAVLNACRFSGLVDKGKRIFQLMTENLRMKPRAMHYACVIE 461
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
GR G+ +E I+ P +W LL +SR+H +M LAK A ++LL ++P
Sbjct: 462 LFGREGLLDEAYSMIRR-APFTPTANMWGALLTASRIHKNMHLAKLAAEQLLAMEPEKIN 520
Query: 248 ----------------------------GMYV--GC-WIEIQNKIYEFVSNEEL---TSE 273
G+Y+ C WI ++ ++F + L ++E
Sbjct: 521 SYAVLLNLYVSSGRQDDACKVVETLKRKGLYIHNACTWITVKKTDHKFFFKDTLHPQSAE 580
Query: 274 VSDKLAEIEENMKELGFVLNR---------------SLYQTKMKAVALGLISFPHGMPTR 318
+ +L + ++++E G+V S Y ++ A+A GL+S P R
Sbjct: 581 IYRRLHTLMKDVREAGYVAEENELLPDIYPDEQKVSSAYHSERLAIAFGLMSTAPQTPLR 640
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+ +S +C H +F++ + +RE+VV+D FHHFK G CSC D
Sbjct: 641 INQSHRLCRDCHKVIKFVAEVTKREIVVRDGSRFHHFKLGICSCGD 686
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%)
Query: 86 CLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM 145
L+++ S+CG ID+A F P + ++W +++A V HG EAL+L+++ +M
Sbjct: 255 ALLDMYSKCGLIDEARRVFDGLPRASVVAWNSMLAAYVLHGRSEEALELYQEMCRSRVAM 314
Query: 146 NPTTFRSALKAYALMGLVGEA 166
+ TF + L ++ +GL+ A
Sbjct: 315 DQFTFSTMLGVFSRLGLLEHA 335
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
N ++ CG + +A AF P++N ++W ++ V+ G P AL LF++
Sbjct: 144 NHVLRTYLECGMLAEARRAFDGMPDRNGVTWGIMMGGLVDRGQPRAALALFRE 196
>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 975
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 174/375 (46%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D SI L +C L +G + + K L H V LI++ ++CG ++ + F
Sbjct: 602 DEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIF 661
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
K ++W +I+ HGH +A++LFK Q + TF + L A GLV
Sbjct: 662 DRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVA 721
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E M+ ++ I+P EHY+ +V+ LGRAG E LE + + P K IW +LL
Sbjct: 722 EGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNEL-PDKPDSRIWSSLLS 780
Query: 225 SSRVHGDMKLAKYALDKLLELDPGM---YV------------------------------ 251
S R + D+ + + +KLLEL P YV
Sbjct: 781 SCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKD 840
Query: 252 -GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGF------VLNRSLYQTK 300
GC WIEI K+ F+ +E + ++ E+E+ + ++G+ VL+ K
Sbjct: 841 AGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELEEDEK 900
Query: 301 MK---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+K A++ GL++ G RV K++ +C H+A + +S I +RE++V+D
Sbjct: 901 IKILRNHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIVRDNKR 960
Query: 352 FHHFKDGKCSCKDAY 366
FHHFK+G CSC D +
Sbjct: 961 FHHFKNGFCSCGDYW 975
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 4/144 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQA 70
I WN ++ K +D+ ELL ++Q+ ++ ++ ++L C I +
Sbjct: 365 ISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHG 424
Query: 71 YMTKRGLI-SHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
Y + G I S V N + ++CG + A+ F K SW +I V +G P
Sbjct: 425 YALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPR 484
Query: 130 EALDLFKDKQWRYTSMNPTTFRSA 153
+ALDL+ R + + P F A
Sbjct: 485 KALDLY--LLMRGSGLEPDLFTIA 506
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Query: 14 WNLLLKACIKAKDY-EMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN LL ++ + + V +E I L D++++ ++ +C+ + +G +
Sbjct: 163 WNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFA 222
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K ++S VGN LI + + G ++ A F P++N +SW ++ A + +G E+
Sbjct: 223 LKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESY 282
Query: 133 DLFK 136
LFK
Sbjct: 283 GLFK 286
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++I +L++C L+ G + M + G + L+++ +CGKI A L F
Sbjct: 501 DLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFF 560
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
+ EKN + W +I+ + P +ALD+F
Sbjct: 561 DNMEEKNLVCWNTMINGFSQNEFPFDALDMF 591
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 178/372 (47%), Gaps = 54/372 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S ++ +L++C L+ G + A+ + GL + N L+++ RCG+++ A F
Sbjct: 496 NSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQF 555
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
S EK+ SW +++ G A++LF + + TF S L A + G+V
Sbjct: 556 NSC-EKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVT 614
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ F SME +HI P+ +HY+ +V+ LGRAG E+ EFIK + P P IW LL
Sbjct: 615 DGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKM-PIDPDPAIWGALLN 673
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
+ R++ +++L + A + E+D G Y+
Sbjct: 674 ACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVD 733
Query: 252 -GC-WIEIQNKIYEFVSNEELTSEVSDKLAEIE---ENMKELGFVLNRSLYQTKMK---- 302
GC W+E+ +++ F++ ++ ++ + A +E E M+ G +++ + +
Sbjct: 734 PGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRRDDIDASKA 793
Query: 303 ----------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
A+A GLI+ G P V K++ MC H+ +F+S ++ R + V+D F
Sbjct: 794 EIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQF 853
Query: 353 HHFKDGKCSCKD 364
HHFKDG CSC D
Sbjct: 854 HHFKDGVCSCGD 865
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +I +L++C LL+ G + + GL S+ V N LI++ S+C ID A F
Sbjct: 396 DEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVF 455
Query: 105 KSTPEKNSLSWTFII-SARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMG 161
P KN +SWT II R+N+ EAL F Q S+ P T S L A A +G
Sbjct: 456 HRIPNKNVISWTSIILGLRLNY-RSFEALFFF---QQMILSLKPNSVTLVSVLSACARIG 511
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 62/125 (49%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ ++++C +G + Y+ K G ++ +V N LI ++S G D+A++ F
Sbjct: 295 DLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVF 354
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
K+ +SWT +IS +G P +A++ + + + T S L A A +GL+
Sbjct: 355 SKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLD 414
Query: 165 EAYRL 169
+ L
Sbjct: 415 KGIML 419
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+L+ KA ++ L R+ D Y+ +L +C L G + ++
Sbjct: 163 WNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVI 222
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ G S V N LI + +CG I A L F P ++ +SW +IS + E L
Sbjct: 223 RYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLR 282
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMG 161
LF + + + T S + A +G
Sbjct: 283 LFFMMREFFVDPDLMTMTSVISACEALG 310
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 1/144 (0%)
Query: 13 PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
P +L+L+ C+K D E L+ +Q ++ + +L C + G++ +Y+
Sbjct: 62 PNSLILELCLKG-DLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYV 120
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
+K +GN L+++ R G + +A F E++ SW ++ G+ EAL
Sbjct: 121 SKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEAL 180
Query: 133 DLFKDKQWRYTSMNPTTFRSALKA 156
+L+ W + TF L+
Sbjct: 181 NLYHRMLWVGIRPDVYTFPCVLRT 204
>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 921
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 103/372 (27%), Positives = 176/372 (47%), Gaps = 61/372 (16%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
S+C L S +G Q K G+ S V N L+++ +CG D+ F S
Sbjct: 558 SVCGGLGSA------KLGQQIHTVAIKHGMDSELIVANALMSMYFKCG-CADSHKVFDSM 610
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
E++ +W I+ HG EA+ +++ + N TF L A + GLV E +
Sbjct: 611 EERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGW 670
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
+ F SM Y + P EHY+ MV+ LGR G + +FI + P + +IW LL + +
Sbjct: 671 QFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDM-PIEPDTVIWSALLGACK 729
Query: 228 VHGDMKLAKYALDKLLELDP----------------GMYV------------------GC 253
+H + ++ + A +KL +P GM+V GC
Sbjct: 730 IHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGC 789
Query: 254 -WIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRS-------------- 295
W++I+NK++ FV+ + E E+ L ++ ++ G+V +
Sbjct: 790 SWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVPDTEFVLHDIDEEQKESS 849
Query: 296 -LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHH 354
LY ++ AVA GL+ P GMP +++K++ +CG H+ +F+S + +R++ ++D FHH
Sbjct: 850 LLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSHVTKRDIDIRDGNRFHH 909
Query: 355 FKDGKCSCKDAY 366
F++G CSC D +
Sbjct: 910 FRNGSCSCGDFW 921
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR 151
+RCG+I +A + F+ P+ +SW +I+ + +G EA +LF +R N ++
Sbjct: 332 ARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFR----NTISWA 387
Query: 152 SALKAYALMGLVGEAYRLFLSMEE 175
+ YA G EA L ++
Sbjct: 388 GMIAGYAQNGRSEEALDLLQALHR 411
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR 151
+R G++ +A F + P ++ ++W +ISA N G +A LF + N T
Sbjct: 44 ARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFD----AISGGNVRTAT 99
Query: 152 SALKAYALMGLVGEAYRLFLSMEE 175
L YA +G V +A R+F M E
Sbjct: 100 ILLSGYARLGRVLDARRVFDGMPE 123
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 87 LININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN 146
L++ +R G++ DA F PE+N+++W ++S V +G + A LF S +
Sbjct: 101 LLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFD----AMPSRD 156
Query: 147 PTTFRSALKAYALMGLVGEAYRLFLSMEE 175
T++ S + Y + +A+ LF M +
Sbjct: 157 VTSWNSMVTGYCHSRQMVDAWNLFKQMPQ 185
Score = 38.1 bits (87), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 5/143 (3%)
Query: 55 SCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLS 114
+C + L G Q + K G + V N LI++ +C ++ F K+++S
Sbjct: 427 ACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVS 486
Query: 115 WTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174
W I+A V + +A +F + S + ++ + + AYA EA F +M
Sbjct: 487 WNSFIAALVQNNMLEDARHIFDN----MLSRDVVSWTTIISAYAQAERGDEAVEFFKTML 542
Query: 175 EVYHIEPSEEHYSIMVEALGRAG 197
H +P+ +I++ G G
Sbjct: 543 H-EHEKPNSPILTILLSVCGGLG 564
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 109/408 (26%), Positives = 190/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN+++ + + L + +Q + ++ +L + L +G Y
Sbjct: 236 VSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLY 295
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + +G+ L+++ S+CG ID A F++ P++N+++W+ II A HG +A
Sbjct: 296 AGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDA 355
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F + N + L A + GLV E F M +V ++P EHY MV+
Sbjct: 356 IIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVD 415
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG EE E I+ + P + +IW+ LL + ++H ++K+ + + L+EL P G
Sbjct: 416 LLGRAGHLEEAEELIRNM-PIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSG 474
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEELTS---E 273
YV GC WIEI I+EF+ ++ S E
Sbjct: 475 SYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKE 534
Query: 274 VSDKLAEIEENMKELGFVLN--------------RSL-YQTKMKAVALGLISFPHGMPTR 318
+ L E+ ++ G+ N R+L Y ++ AVA GLIS P +
Sbjct: 535 IQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLK 594
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +C H++ + +S I +R+++V+D FH F+ G CSC D +
Sbjct: 595 IVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 19/228 (8%)
Query: 17 LLKACIKA---KDYEMVHELLERIQ------LCCGFIDSYSICDILNSCLNPILLNV--- 64
+LKAC +A ++ + +H L+ + + + Y +C ++ + NV
Sbjct: 128 VLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDF 187
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
Q + KR + + N +I+ R G I A F P ++ +SW +IS
Sbjct: 188 DGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQ 247
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL--VGEAYRLFLSMEEVYHIEPS 182
+GH EA++LF++ Q N T S L A A +G +G+ L+ +V E
Sbjct: 248 NGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKV---EID 304
Query: 183 EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
+ S +V+ + G ++ L+ + + K + W ++ + +HG
Sbjct: 305 DVLGSALVDMYSKCGSIDKALQVFETL--PKRNAITWSAIIGAFAMHG 350
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 119/417 (28%), Positives = 187/417 (44%), Gaps = 69/417 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLC-----CGF-IDSYSICDILNSCLNPILLNVG 65
+ W L+ ++A + +E + LC GF +D +I +L +C N L+ G
Sbjct: 186 VSWTSLISGLVEAG------QSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQG 239
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP--EKNSLSWTFIISARV 123
Y+ G+ +G L+N+ +CG +++A F +K+ WT +I
Sbjct: 240 RWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFA 299
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
HG EAL+ F + N TF + L+A + GLV E LF SM+ Y++ PS
Sbjct: 300 IHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSI 359
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
EHY MV+ LGR+G +E E IK + P K +IW LL + +H D L L+
Sbjct: 360 EHYGCMVDLLGRSGRLDEAKELIKKM-PMKPSAVIWGALLKACWIHRDFLLGSQVGAHLV 418
Query: 244 ELD---PGMYV---------GCWIE-----------------------IQNKIYEFVSNE 268
E+D G Y+ G W E + ++EF++
Sbjct: 419 EVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAGH 478
Query: 269 E---LTSEVSDKLAEIEENM----------KELGFVLNRSLYQTKMK------AVALGLI 309
+ ++ KL +I E + K+L L +T M A+A GLI
Sbjct: 479 QDHPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLENEEKETAMAQHSEKLAIAFGLI 538
Query: 310 SFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ G RVIK++ +C H+ + +S I RE++++D FHHF+DG CSCKD +
Sbjct: 539 NTKPGTTIRVIKNLRICRDCHTVAKLVSQIYSREIIMRDRVRFHHFRDGSCSCKDYW 595
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGTQAQAY 71
WN +++A + + E+ L Q+ + +SY+ +L +C N + + Q
Sbjct: 56 WNAIIRAYSNSDEPELA--FLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGL 113
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G S N L+++ + CG+I A F + PE++++SW +I + G A
Sbjct: 114 VIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTA 173
Query: 132 LDLFKD 137
+F D
Sbjct: 174 YGVFLD 179
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 178/372 (47%), Gaps = 54/372 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S ++ +L++C L+ G + A+ + GL + N L+++ RCG+++ A F
Sbjct: 496 NSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQF 555
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
S EK+ SW +++ G A++LF + + TF S L A + G+V
Sbjct: 556 NSC-EKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVT 614
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ F SME +HI P+ +HY+ +V+ LGRAG E+ EFIK + P P IW LL
Sbjct: 615 DGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKM-PIDPDPAIWGALLN 673
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
+ R++ +++L + A + E+D G Y+
Sbjct: 674 ACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVD 733
Query: 252 -GC-WIEIQNKIYEFVSNEELTSEVSDKLAEIE---ENMKELGFVLNRSLYQTKMK---- 302
GC W+E+ +++ F++ ++ ++ + A +E E M+ G +++ + +
Sbjct: 734 PGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRRDDIDASKA 793
Query: 303 ----------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
A+A GLI+ G P V K++ MC H+ +F+S ++ R + V+D F
Sbjct: 794 EIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQF 853
Query: 353 HHFKDGKCSCKD 364
HHFKDG CSC D
Sbjct: 854 HHFKDGVCSCGD 865
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +I +L++C LL+ G + + GL S+ V N LI++ S+C ID A F
Sbjct: 396 DEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVF 455
Query: 105 KSTPEKNSLSWTFII-SARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMG 161
P KN +SWT II R+N+ EAL F Q S+ P T S L A A +G
Sbjct: 456 HRIPNKNVISWTSIILGLRLNY-RSFEALFFF---QQMILSLKPNSVTLVSVLSACARIG 511
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 62/125 (49%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ ++++C +G + Y+ K G ++ +V N LI ++S G D+A++ F
Sbjct: 295 DLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVF 354
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
K+ +SWT +IS +G P +A++ + + + T S L A A +GL+
Sbjct: 355 SKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLD 414
Query: 165 EAYRL 169
+ L
Sbjct: 415 KGIML 419
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+L+ KA ++ L R+ D Y+ +L +C L G + ++
Sbjct: 163 WNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVI 222
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ G S V N LI + +CG I A L F P ++ +SW +IS + E L
Sbjct: 223 RYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLR 282
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMG 161
LF + + + T S + A +G
Sbjct: 283 LFFMMREFFVDPDLMTMTSVISACEALG 310
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 1/144 (0%)
Query: 13 PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
P +L+L+ C+K D E L+ +Q ++ + +L C + G++ +Y+
Sbjct: 62 PNSLILELCLKG-DLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYV 120
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
+K +GN L+++ R G + +A F E++ SW ++ G+ EAL
Sbjct: 121 SKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEAL 180
Query: 133 DLFKDKQWRYTSMNPTTFRSALKA 156
+L+ W + TF L+
Sbjct: 181 NLYHRMLWVGIRPDVYTFPCVLRT 204
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 169/373 (45%), Gaps = 54/373 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L +C + L +G + + G S V N LI++ +CG + A L F
Sbjct: 854 DGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLF 913
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
PEK+ ++WT +IS HG +EA+ F+ + + TF S L A + GL+
Sbjct: 914 DMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLN 973
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F SM ++EP EHY+ MV+ L R G + I+ +P K IW LL
Sbjct: 974 EGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIE-TMPIKPDATIWGALLC 1032
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
R+H D++LA+ + + EL+P G YV
Sbjct: 1033 GCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKS 1092
Query: 252 -GC-WIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGF-------VLNRSLYQT 299
GC WIE+Q K FVS + + L + MK G ++N +
Sbjct: 1093 PGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKNEGHSPKMRYALINAGDMEK 1152
Query: 300 KMK--------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
++ A+A G+++ P G RV K++ +C H +FMS RE++++D
Sbjct: 1153 EVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCDDCHEMAKFMSKTTRREIILRDSNR 1212
Query: 352 FHHFKDGKCSCKD 364
FHHFKDG CSC+D
Sbjct: 1213 FHHFKDGFCSCRD 1225
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ A ++ Y+ L ++ D YS+ +L++C L+ G Y
Sbjct: 721 VSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNY 780
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + V N L+++ ++CG +++A L F P K+ +SW +I + P+EA
Sbjct: 781 IRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEA 840
Query: 132 LDLFKDKQ 139
L LF + Q
Sbjct: 841 LKLFAEMQ 848
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 68/147 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ C+ E ++ + +D ++ + + +C N L++G
Sbjct: 620 VSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQ 679
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K N L+++ S+CG ++DA AF+ +K +SWT +I+A V G +A
Sbjct: 680 GVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDA 739
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
+ LF + + + S + + S L A A
Sbjct: 740 IRLFYEMESKGVSPDVYSMTSVLHACA 766
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 3/127 (2%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+++YS IL C L G + ++ G+ +G L+ + CG + +
Sbjct: 451 LNAYS--SILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRI 508
Query: 104 FKSTPEKNSLS-WTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F N + W ++S G E++ LFK Q + N TF LK +A +G
Sbjct: 509 FDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGR 568
Query: 163 VGEAYRL 169
VGE R+
Sbjct: 569 VGECKRI 575
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 109/410 (26%), Positives = 189/410 (46%), Gaps = 58/410 (14%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
EI W+ ++ I+ + E+ ++Q + + +L++C N L+ G
Sbjct: 267 EISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHT 326
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y + + +G L+++ ++CG+ID A F+ K SW +I HG +
Sbjct: 327 YAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAED 386
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+DLF + N TF L A A GLV + +F SM + Y +EP EHY +V
Sbjct: 387 AIDLFSKMD---INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIV 443
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG+ E + + I P + P +W LL + R HG+++L + LLEL+P
Sbjct: 444 DLLGRAGLLTEAEKVVSSI-PTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNS 502
Query: 248 GMYV---------GCWIEI------------------------QNKIYEFVSNEELTSEV 274
G Y G W E+ + ++++F+ + +V
Sbjct: 503 GRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQV 562
Query: 275 SD---KLAEIEENMKELGFVLNRS--------------LYQTKMK-AVALGLISFPHGMP 316
D L +++E ++ G+ + S ++Q K A+ GLI+ G
Sbjct: 563 KDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTT 622
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C HSA + +S + RE++V+D +HHF++G CSCKD +
Sbjct: 623 IRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 672
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 118/277 (42%), Gaps = 29/277 (10%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++K CI+ + L + + + Y+ +L +C + ++ G Q A++
Sbjct: 105 WNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLV 164
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKST-PEKNSLSWTFIISARVNHGHPSEAL 132
K GL + + I + + G++ +A E +++ W +I + G A
Sbjct: 165 KHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAAR 224
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA 192
+LF+ R SM +T+ + + ++ G+V A F M+E I +S M++
Sbjct: 225 ELFEGMPDR--SM-ISTWNAMISGFSRCGMVEVAREFFDEMKERDEIS-----WSAMIDG 276
Query: 193 LGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLA---------KYALDKLL 243
+ G F E LE + K+ P R +L S + L YA +
Sbjct: 277 YIQEGCFMEALEIFHQMQKEKIRP---RKFVLPSVLSACANLGALDQGRWIHTYAKRNSI 333
Query: 244 ELDP-------GMYVGCW-IEIQNKIYEFVSNEELTS 272
+LD MY C I++ +++E +SN+E++S
Sbjct: 334 QLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSS 370
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 114/409 (27%), Positives = 192/409 (46%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ ++ +E E+ +Q G D ++ I ++C + L++
Sbjct: 435 VSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYY 494
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ K G+ +G L+++ SRCG + A F S ++ +WT I A G+
Sbjct: 495 YIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAER 554
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A++LF D + + F AL A + GLV + +F SM +++ + P + HY MV
Sbjct: 555 AIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMV 614
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG+ EE ++ I+ + P + +IW +LL + RV G++++A YA +K+ L P
Sbjct: 615 DLLGRAGLLEEAVQLIEDM-PMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERT 673
Query: 248 GMYV---------GCW-----------------------IEIQNKIYEFVSNEELTSEVS 275
G YV G W I+I+ K +EF S +E E+
Sbjct: 674 GSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMP 733
Query: 276 D---KLAEIEENMKELGFV--LNRSLYQTKMK-------------AVALGLISFPHGMPT 317
+ L E+ + LG V L+ L K A+A GLIS G
Sbjct: 734 NIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTI 793
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C HS +F S + RE++++D FH+ + GKCSC D +
Sbjct: 794 RIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y+ L++C G Q + K G V N L++ + CG++D A F
Sbjct: 133 DKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVF 192
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
E+N +SWT +I +A+DLF
Sbjct: 193 DEMSERNVVSWTSMICGYARRDFAKDAVDLF 223
>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 573
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 116/416 (27%), Positives = 193/416 (46%), Gaps = 63/416 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCC---GFI--DSYSICDILNSCLNPILLNVGT 66
I W+ L+ + Y+ +L +QL F+ + +++ +L++C L G
Sbjct: 160 ISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGK 219
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSL-SWTFIISARVNH 125
AY+ K + +G LI++ ++CG ++ A F + K + +++ +I +
Sbjct: 220 WVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMY 279
Query: 126 GHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
G E LF + ++NP TF L A GL+ E F M E + I PS
Sbjct: 280 GLTDECFQLFSEMT-TSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSI 338
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
+HY MV+ GR+G+ +E FI + P + LIW +LL SR+ GD+K + AL +L+
Sbjct: 339 QHYGCMVDLYGRSGLIKEAESFIASM-PMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLI 397
Query: 244 ELDP---GMYV-------------------------------GC-WIEIQNKIYEFVSNE 268
ELDP G YV GC ++E++ ++EFV +
Sbjct: 398 ELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGD 457
Query: 269 ELTSE---VSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLIS 310
E E + L EI + ++E G+V + Y ++ A+A L+
Sbjct: 458 ESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMK 517
Query: 311 FPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G P R+IK++ +CG H + +S + RE+VV+D FHHF+DG CSC+D +
Sbjct: 518 TRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 13/196 (6%)
Query: 14 WNLLLKACIKAKDYEMVHELLE---RIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
WN++++A + H + R++ D ++ +L S NP+ L +G + A
Sbjct: 27 WNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHA 86
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ GL P V L+N+ S CG + A F + K+ +W +++A G +
Sbjct: 87 QILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDD 146
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME-----EVYHIEPSEEH 185
A LF + R N ++ + Y + G EA LF M+ E + + P+E
Sbjct: 147 ARKLFDEMPER----NVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAF-VRPNEFT 201
Query: 186 YSIMVEALGRAGMFEE 201
S ++ A GR G E+
Sbjct: 202 MSTVLSACGRLGALEQ 217
>gi|225428796|ref|XP_002285135.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15690
[Vitis vinifera]
Length = 593
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 183/379 (48%), Gaps = 42/379 (11%)
Query: 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRG 76
L+ C + K E V EL+E+ D+ + NSC +P LL + + +
Sbjct: 224 LMNLCQEGKVKEAV-ELMEKGVRA----DAQCFYALFNSCGSPKLLEEAKKVHDFFLQST 278
Query: 77 LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
S + N ++ + CG + DA F ++ SW +I+ N+ + L L++
Sbjct: 279 FRSDLQLNNKVLEMYGNCGSMTDARRVFDHMANRDMDSWHLMINGYANNAMGDDGLQLYE 338
Query: 137 DKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALG 194
Q R + P TF + L A V E + F SM+ Y I P+ EHY +++ LG
Sbjct: 339 --QMRKLGLEPNEQTFLAVLSTCASAEAVEEGFIHFESMKTEYGITPTFEHYVGIIDVLG 396
Query: 195 RAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGC- 253
++G E EFI+ + P + ++W L+ +++HGD+ L +A + ++ LDP V
Sbjct: 397 KSGHVIEAKEFIEQM-PVEPSAVVWEALMNYAKIHGDIDLEDHAEELMVALDPLKAVANK 455
Query: 254 -------------WIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRS----- 295
++ +N++ EF N L + +KL + MKE G+V +
Sbjct: 456 TPTPPPKKRTAINMLDGKNRLSEF-RNPTLYKD-DEKLKSLN-GMKEAGYVPDTRYVLHD 512
Query: 296 ----------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELV 345
LY ++ A+A GLIS P P R+IK++ +CG H+A + MS I+ REL+
Sbjct: 513 IDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSKIVGRELI 572
Query: 346 VKDPGSFHHFKDGKCSCKD 364
V+D FHHFKDGKCSC D
Sbjct: 573 VRDNKRFHHFKDGKCSCGD 591
>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
Length = 773
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 190/407 (46%), Gaps = 61/407 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYS---ICDILNSCLNPILLNVGTQA 68
+ WN L+ +K E V E +E ++ G +S + IL C L G +
Sbjct: 244 VSWNSLIAGLVKK---EGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEI 300
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A + K V N L+++ ++CG +D F K+ SW +I+ +G
Sbjct: 301 HAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRM 360
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
+EA++ F++ S + TF + L + GL + RLF M+ + I P+ EHY+
Sbjct: 361 TEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDHGISPTVEHYAC 420
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP- 247
+V+ LGRAG +E LE +K + P K IW +LL S R+HG++ LA+ +L EL+P
Sbjct: 421 LVDVLGRAGRIKEALEIVKNM-PFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPN 479
Query: 248 --GMYV-------------------------------GC-WIEIQNKIYEFV---SNEEL 270
G YV GC W++I++KI+ FV SNE
Sbjct: 480 NAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKIHTFVAGGSNEFR 539
Query: 271 TS-EVSDKLAEIEENMKELGFVLN------------RSLY---QTKMKAVALGLISFPHG 314
S E + E M+E+G+V + R+++ ++ A LI+ G
Sbjct: 540 NSVEYKKVWKRLMEAMEEVGYVPDTGVVLHDVSEEMRAMWVCGHSERLATMFALINTASG 599
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCS 361
MP R+ K++ +C HS + +S + R +V++D FHHFKDG CS
Sbjct: 600 MPIRITKNLRVCVDCHSWVKTLSKVTGRVIVLRDTNRFHHFKDGVCS 646
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 6/150 (4%)
Query: 77 LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLS---WTFIISARVNHGHPSEALD 133
L+++P + LI + S CG++D+A F+ E L W + +G+P EAL
Sbjct: 104 LLNNPTLKGKLITLFSVCGRVDEARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKEALL 163
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
L+ + ++ + F ALKA + +G + + + + +P + + ++
Sbjct: 164 LYYEMVCQFGQLGNFAFSMALKACSDLGDLRTGRAVHAQVLKATE-DPDQVVNNALLRLY 222
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
G FEE L G+ L + W +L+
Sbjct: 223 SEDGCFEEALRMFDGMPHRNL--VSWNSLI 250
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 46/238 (19%), Positives = 96/238 (40%), Gaps = 6/238 (2%)
Query: 9 DVEIPWNLLLKACIK-AKDYEMVHELLERIQLCCGF--IDSYSICDILNSCLNPILLNVG 65
DV++P ++ + I +++ LL ++ C F + +++ L +C + L G
Sbjct: 137 DVDLPESVWVAMGIGYSRNGYPKEALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLRTG 196
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
A + K V N L+ + S G ++A F P +N +SW +I+ V
Sbjct: 197 RAVHAQVLKATEDPDQVVNNALLRLYSEDGCFEEALRMFDGMPHRNLVSWNSLIAGLVKK 256
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
EA++ F+ Q + + T + L A + +G + + + +P
Sbjct: 257 EGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKST-AKPDAPV 315
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
+ +V+ + G + G+ L W TL+ ++G M A + +++
Sbjct: 316 LNSLVDMYAKCGAMDYCRRVFNGMQGKDLTS--WNTLITGYAINGRMTEAMESFQEMI 371
>gi|38347147|emb|CAD39490.2| OSJNBa0039G19.7 [Oryza sativa Japonica Group]
Length = 557
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/335 (30%), Positives = 169/335 (50%), Gaps = 33/335 (9%)
Query: 58 NPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTF 117
NP LL + + + + V N ++ + ++C ++ A F P++N SW
Sbjct: 230 NPKLLEELRKIHDFFLRSPFRADLQVNNKMLEMYAKCAAMNHARRTFDHMPDRNMDSWHI 289
Query: 118 IISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEE 175
+I +G AL LF++ + +Y + PT TF L A A + EA+ F +M
Sbjct: 290 MIDGYAVNGLGDVALQLFEEMKTKY-GIAPTAHTFTLVLNACANSEAIEEAFLYFDAMSR 348
Query: 176 VYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLA 235
+ IEP EHY ++E LG++G E +E+I+ + P + +W +LL +R++GD+ L
Sbjct: 349 DHGIEPGVEHYVGIIEVLGKSGHLNEAVEYIEKL-PFEPTDTVWESLLNLARMNGDIDLE 407
Query: 236 KYALDKLLELDPG-------------MYVGC-WIEIQNKIYEF----------VSNEELT 271
A + L+ LDP +G ++ +NK+ E+ V+ +
Sbjct: 408 DRAEELLVSLDPTKVNPKKLPTPPPKRRLGINMLDGRNKLVEYRLPPKIEKKVVNEQRYV 467
Query: 272 SEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHS 331
+ L +I++ KE LY ++ A+A GLIS P P R+IK++ +CG H+
Sbjct: 468 PDTRYVLHDIDQEAKEQAL-----LYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHN 522
Query: 332 ACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
A + MS I+ REL+V+D FHHFKDGKCSC D +
Sbjct: 523 AIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 557
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/409 (25%), Positives = 186/409 (45%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQA 70
+ W+ ++ + + Y EL ++Q G + ++ +L++C + L++G
Sbjct: 225 VSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHR 284
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
++ + + +GN L ++ ++CG + +A F E++ +SW+ II +G+ +E
Sbjct: 285 FIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANE 344
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A + F + N +F L A GLV + F M +VY I P EHY +V
Sbjct: 345 AFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVV 404
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG-- 248
+ L RAG ++ I + P + ++W LL R++ D + + + ++LELD
Sbjct: 405 DLLSRAGRLDQAESLINSM-PMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHS 463
Query: 249 ---MYV-----------------------------GC-WIEIQNKIYEFV---SNEELTS 272
+Y+ GC WIEI N +YEF S+ +
Sbjct: 464 GSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSL 523
Query: 273 EVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGMPT 317
+ + E++ MK G+ L ++ A+A GLI+ G
Sbjct: 524 RIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTI 583
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C H A + +S I+ERE+VV+D FHHFKDGKCSC D +
Sbjct: 584 RIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCSCNDYW 632
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 32/149 (21%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN--------------- 89
D Y+ +L +C + G + ++TK G S+ V N L++
Sbjct: 126 DEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLF 185
Query: 90 --------------INSRC--GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
I+ C G +D A + F EKN +SW+ +IS + ++A++
Sbjct: 186 DEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIE 245
Query: 134 LFKDKQWRYT-SMNPTTFRSALKAYALMG 161
LF+ Q + N T S L A A +G
Sbjct: 246 LFRQMQHEGGLAPNDVTLVSVLSACAHLG 274
>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
Length = 1166
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 180/404 (44%), Gaps = 54/404 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ A E ++ ++ +D +S L + N +L G Q
Sbjct: 668 ITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGL 727
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G S V N +++ +CG++ D ++ LSW +ISA HG +A
Sbjct: 728 VIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKA 787
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F + + TF S L A GLV E + SM + + P EH +++
Sbjct: 788 RETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIID 847
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGR+G FIK + P L WR+LL + R+HG+++LA+ + LLELDP
Sbjct: 848 LLGRSGRLSHAEGFIKEM-PVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDS 906
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEEL---TSE 273
YV C W+++++K++ F E+ S
Sbjct: 907 AYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASR 966
Query: 274 VSDKLAEIEENMKELGFVLNRSLYQTKMK---------------AVALGLISFPHGMPTR 318
+S KL E+ + KE G+V + S M A+A GLI+ P R
Sbjct: 967 ISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLR 1026
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
+ K++ +CG HS +F+S I+ R++V++DP FHHF GKCSC
Sbjct: 1027 IFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSC 1070
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 14/206 (6%)
Query: 48 SICDILNSCLNPI-LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
++ +L +C P LL G A++ G S V N LI + ++CG ++ ++ F
Sbjct: 602 TMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDG 661
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
K+ ++W +++A +HG EAL +F + + +++ +F L A A + ++ E
Sbjct: 662 LGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEG 721
Query: 167 YRLF-----LSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221
+L L E H+ + ++ G+ G +VL+ + P L W
Sbjct: 722 QQLHGLVIKLGFESDLHVTNAA------MDMYGKCGEMHDVLKMLP--QPINRSRLSWNI 773
Query: 222 LLLSSRVHGDMKLAKYALDKLLELDP 247
L+ + HG + A+ ++L+L P
Sbjct: 774 LISAFARHGCFQKARETFHEMLKLGP 799
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI------DSYSICDILNSC-LNPILLN 63
E W+ +L ++ YE E + L C + + + ++ +C + + +
Sbjct: 160 EASWSTMLSGYVRVGLYE------EAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMAD 213
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G Q ++ K G++ VG L++ G + +A F+ P+ N +SWT ++
Sbjct: 214 EGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYS 273
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
+ G+P E L++++ + S N TF + + L+
Sbjct: 274 DSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLL 310
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G + K GL S+ + N L+ + S G+ +DA+L F++ E++ +SW +++
Sbjct: 414 LKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMAC 473
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
V G + L + + MN TF SAL A
Sbjct: 474 YVQDGKCLDGLKILAELLQMGKVMNHVTFASALAA 508
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 16/226 (7%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
I WN ++ ++ K + + L E +Q+ ++ + L +C NP L A
Sbjct: 465 ISWNSMMACYVQDGKCLDGLKILAELLQMG-KVMNHVTFASALAACSNPECLIESKIVHA 523
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ G VGN L+ + + G + +A ++ P+ + ++W +I + P+E
Sbjct: 524 LIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNE 583
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYAL------MGLVGEAYRLFLSMEEVYHIEPSEE 184
A+ +K + + N T S L A + G+ A+ + E +++ S
Sbjct: 584 AVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNS-- 641
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
++ + G G+ G P+ W ++ ++ HG
Sbjct: 642 ----LITMYAKCGDLNSSNYIFDGL--GNKSPITWNAMVAANAHHG 681
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
+G Q ++ + G +V N LI++ S +++A F E + +SW +ISA
Sbjct: 315 LGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYA 374
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTT 149
+HG E+L F + + N TT
Sbjct: 375 HHGLCRESLRCFHWMRHLHNETNSTT 400
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 114/407 (28%), Positives = 191/407 (46%), Gaps = 55/407 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ ++ +E E+ +Q G D ++ I ++C + L++
Sbjct: 435 VSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYY 494
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ K G+ +G L+++ SRCG + A F S ++ +WT I A G+
Sbjct: 495 YIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAER 554
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A++LF D + + F AL A + GLV + +F SM +++ + P + HY MV
Sbjct: 555 AIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMV 614
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG+ EE ++ I+ + P + +IW +LL + RV G++++A YA +K+ L P
Sbjct: 615 DLLGRAGLLEEAVQLIEDM-PMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERT 673
Query: 248 GMYV---------GCW-----------------------IEIQNKIYEFVSNEELTSEVS 275
G YV G W I+I+ K +EF S +E E+
Sbjct: 674 GSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMP 733
Query: 276 D---KLAEIEENMKELGFV--LNRSLYQTKMK-------------AVALGLISFPHGMPT 317
+ L E+ + LG V L+ L K A+A GLIS G
Sbjct: 734 NIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTI 793
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
R++K++ +C HS +F S + RE++++D FH+ + GKCSC D
Sbjct: 794 RIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGD 840
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y+ L++C G Q + K G V N L++ + CG++D A F
Sbjct: 133 DKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVF 192
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
E+N +SWT +I +A+DLF
Sbjct: 193 DEMSERNVVSWTSMICGYARRDFAKDAVDLF 223
>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 568
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 193/419 (46%), Gaps = 74/419 (17%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGTQAQ 69
I W+ L+ K + L +++QL I D + ++++ + L +G
Sbjct: 160 ISWSSLISCFAKRGLPDEALTLFQQMQLKESDILPDGVVMLSVISAVSSLGALELGIWVH 219
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
A++++ G+ ++G+ LI++ SRCG ID + F P +N ++WT +I+ HG
Sbjct: 220 AFISRIGVNLTVSLGSALIDMYSRCGDIDRSVKVFDEMPHRNVVTWTALINGLAVHGRGR 279
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
EAL+ F D + F L A + GLV E R+F SM Y IEP+ EHY M
Sbjct: 280 EALEAFYDMVESGLKPDRIAFMGVLVACSHGGLVEEGRRVFSSMWSEYGIEPALEHYGCM 339
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
V+ LGRAGM E +F++G+ ++ P +IWRTLL + H + LA+ A +++ ELDP
Sbjct: 340 VDLLGRAGMVLEAFDFVEGM---RVRPNSVIWRTLLGACVNHNLLVLAEKAKERIKELDP 396
Query: 248 ---GMY---------VGCWIE-----------------------IQNKIYEFVSNEE--- 269
G Y VG W++ I +EFVS +
Sbjct: 397 HHDGDYVLLSNAYGGVGNWVKKEGVRNSMRESKIVKEPGLSLVHIDQVAHEFVSGDNSHP 456
Query: 270 --------------------LTSEVSDKLAEIEENMKE--LGFVLNRSLYQTKMKAVALG 307
T + L +I+E KE LG Y ++ AVA
Sbjct: 457 QWEEITRFLGSVIDTVKLGGYTPSTKNVLHDIQEEEKEHSLG-------YHSEKLAVAFV 509
Query: 308 LISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
L+ RVIK++ +C HS + +S +R++V++D FHHF+ G CSC+D +
Sbjct: 510 LLYHRDRKTIRVIKNLRICYDCHSFMKHVSGFFDRDIVIRDRSRFHHFRKGSCSCRDFW 568
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 56 CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSW 115
C++ ++L +G + Y V N LIN G + + F P ++ +SW
Sbjct: 114 CIHTLVLKLGFHSNIY-----------VQNALINSYGTSGSLHASLKLFDEMPRRDLISW 162
Query: 116 TFIISARVNHGHPSEALDLFKDKQWRYTSMNP 147
+ +IS G P EAL LF+ Q + + + P
Sbjct: 163 SSLISCFAKRGLPDEALTLFQQMQLKESDILP 194
>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
Length = 611
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 177/373 (47%), Gaps = 56/373 (15%)
Query: 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK 105
S ++ +L++C L +G Y+ K L S V LI++ ++CG ++DA F+
Sbjct: 239 SVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQ 298
Query: 106 STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165
++ +W+ ++ A NHG+ EA+ +F++ + + + TF L A + G+V E
Sbjct: 299 DMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSE 358
Query: 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS 225
+ F SM E Y I +HY + + L R+G E +FI + P K ++WRTLL +
Sbjct: 359 GLQYFDSMRE-YGIVSGIKHYGCVTDLLARSGQLERAYKFIDEL-PIKPTAILWRTLLSA 416
Query: 226 SRVHGDMKLAKYALDKLLELDP---GMYV---------GCW------------------- 254
HGD+ + K +++LELD G YV G W
Sbjct: 417 CAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVP 476
Query: 255 ----IEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRS------------ 295
IEI N ++EF + + + E + E+ E +K +G+V N S
Sbjct: 477 GCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEK 536
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ A++ GL++ G R++K++ +C HS + +S + R ++++D
Sbjct: 537 ATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNR 596
Query: 352 FHHFKDGKCSCKD 364
FHHF+DG CSC D
Sbjct: 597 FHHFEDGVCSCGD 609
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+Y+ +L +C + G QA K G H V LIN+ + CG + A + F
Sbjct: 137 DTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMF 196
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+ +S+ +I+A V P EAL LF++ Q + T S L A AL+G
Sbjct: 197 DRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLG 253
>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
Length = 611
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 177/373 (47%), Gaps = 56/373 (15%)
Query: 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK 105
S ++ +L++C L +G Y+ K L S V LI++ ++CG ++DA F+
Sbjct: 239 SVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQ 298
Query: 106 STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165
++ +W+ ++ A NHG+ EA+ +F++ + + + TF L A + G+V E
Sbjct: 299 DMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSE 358
Query: 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS 225
+ F SM E Y I +HY + + L R+G E +FI + P K ++WRTLL +
Sbjct: 359 GLQYFDSMRE-YGIVSGIKHYGCVTDLLARSGQLERAYKFIDEL-PIKPTAILWRTLLSA 416
Query: 226 SRVHGDMKLAKYALDKLLELDP---GMYV---------GCW------------------- 254
HGD+ + K +++LELD G YV G W
Sbjct: 417 CAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVP 476
Query: 255 ----IEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRS------------ 295
IEI N ++EF + + + E + E+ E +K +G+V N S
Sbjct: 477 GCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEK 536
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ A++ GL++ G R++K++ +C HS + +S + R ++++D
Sbjct: 537 ATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNR 596
Query: 352 FHHFKDGKCSCKD 364
FHHF+DG CSC D
Sbjct: 597 FHHFEDGVCSCGD 609
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+Y+ +L +C + G QA K G H V LIN+ + CG + A + F
Sbjct: 137 DTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMF 196
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+ +S+ +I+A V P EAL LF++ Q + T S L A AL+G
Sbjct: 197 DRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLG 253
>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
Length = 671
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 178/375 (47%), Gaps = 56/375 (14%)
Query: 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK 105
S ++ +L++C L +G Y+ K L S V LI++ ++CG ++DA F+
Sbjct: 239 SVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQ 298
Query: 106 STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165
++ +W+ ++ A NHG+ EA+ +F++ + + + TF L A + G+V E
Sbjct: 299 DMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSE 358
Query: 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS 225
+ F SM E Y I +HY + + L R+G E +FI + P K ++WRTLL +
Sbjct: 359 GLQYFDSMRE-YGIVSGIKHYGCVTDLLARSGQLERAYKFIDEL-PIKPTAILWRTLLSA 416
Query: 226 SRVHGDMKLAKYALDKLLELDP---GMYV---------GCW------------------- 254
HGD+ + K +++LELD G YV G W
Sbjct: 417 CAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVP 476
Query: 255 ----IEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRS------------ 295
IEI N ++EF + + + E + E+ E +K +G+V N S
Sbjct: 477 GCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEK 536
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ A++ GL++ G R++K++ +C HS + +S + R ++++D
Sbjct: 537 ATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNR 596
Query: 352 FHHFKDGKCSCKDAY 366
FHHF+DG CSC D +
Sbjct: 597 FHHFEDGVCSCGDYW 611
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+Y+ +L +C + G QA K G H V LIN+ + CG + A + F
Sbjct: 137 DTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMF 196
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+ +S+ +I+A V P EAL LF++ Q + T S L A AL+G
Sbjct: 197 DRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLG 253
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 105/377 (27%), Positives = 186/377 (49%), Gaps = 58/377 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
++ ++ +L +C + L +G + K L + VG ++++ +CG+++ A AF
Sbjct: 299 NAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAF 358
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
KN SWT +++ HGH EA+ +F + N TF S L A + GL+
Sbjct: 359 DRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLK 418
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTL 222
E + F M+ + +EP EHYS MV+ LGRAG +E I+ + K+ P ++W +L
Sbjct: 419 EGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEM---KVKPDFIVWGSL 475
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW---------------- 254
L + R+H +++L + + KL +LDP G YV G W
Sbjct: 476 LGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLL 535
Query: 255 -------IEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS--LYQTKMK 302
+E + +++ F+ ++ ++ + L E+ ++E+G++ N + LY ++
Sbjct: 536 KTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVE 595
Query: 303 -------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
AVA G+++ G ++IK++ +CG H A + +S I+ RE+V++D
Sbjct: 596 EKGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLRICGDCHFAIKLISKIVNREIVIRDS 655
Query: 350 GSFHHFKDGKCSCKDAY 366
FHHFKDG CSC D +
Sbjct: 656 KRFHHFKDGLCSCGDYW 672
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%)
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
+ SC + L G Q G S V + LI++ S+CG ++DA F PE+N
Sbjct: 93 IKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNV 152
Query: 113 LSWTFIISARVNHGHPSEALDLFKD 137
+SWT +IS V + EA+ LFK+
Sbjct: 153 VSWTSMISGYVQNERAREAVFLFKE 177
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS + ++++C + +V K+G AVGN L++ ++CG+I + F
Sbjct: 197 DSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVF 256
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWR-YTSMNPTTFRSALKAYALMG 161
E + SW +I+ +G EA LF D R N T + L A A G
Sbjct: 257 DGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSG 314
>gi|302773754|ref|XP_002970294.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
gi|300161810|gb|EFJ28424.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
Length = 1096
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/406 (26%), Positives = 185/406 (45%), Gaps = 55/406 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + E +++ L D + +++C + L +G +
Sbjct: 691 ISWNTMIATYAQHGSGRQALEFFKQMDLEGWTPDRATYLGAIDACGSVPSLALGKTIHSI 750
Query: 72 MTKRG--LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ L P V L+ + +RCG + DA F + +N ++W+ +I+A HG +
Sbjct: 751 VATAAPCLEQDPGVATALVTMYARCGSLHDAKSVFWRSHSRNLVTWSNLIAACAQHGREN 810
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE-AYRLFLSMEEVYHIEPSEEHYSI 188
EALDLF++ Q + T + TF + + A + G+V + R+F ++ VY + S EHY
Sbjct: 811 EALDLFREMQLQGTKPDALTFSTLVAACSRRGVVKDGGRRIFDALGRVYPVSASAEHYGC 870
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248
MVE LGRAG EE I+G+ P K IW LL + GD++ A ++ +LDPG
Sbjct: 871 MVEVLGRAGKLEEAEGLIQGM-PRKASGAIWMALLAACNRRGDLERGIRAANRAQQLDPG 929
Query: 249 MYVG-------------------------------------CWIEIQNKIYEFVSNEE-L 270
+ WIE+ N+++EF +++ L
Sbjct: 930 SFAASMAMLAELYGAAGRWEDAARVRKAVESRNARREPGGRSWIEVNNRVHEFGEDDDRL 989
Query: 271 TSEVSDKL-AEIEE----NMKELGFVLNRSLY-------QTKMKAVALGLISFPHGMPTR 318
DK+ E++ ++E G + + ++ A+ G++S P G R
Sbjct: 990 QGPRLDKIRGELQRLSSLAVEEGGICKDENARAHILGCCHSEKVAIGFGIVSTPAGQLIR 1049
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHF-KDGKCSCK 363
++K++ C H+ +F+S I+RE+ V+DP H F +G CSC+
Sbjct: 1050 IVKNLRACHDCHAFAKFVSRRIQREISVRDPYGLHCFHTNGSCSCE 1095
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W L+ A K V ++QL D++ +L +C + LN G +
Sbjct: 95 WTALITAYAKEGHLREVLGFFRKMQLDGTKPDAFVFSTVLTACSSAGALNEGKAIHDCVV 154
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
G+ + VGN ++N+ +CG++ +A F+ PE+N +SW +I+A +GH +A+
Sbjct: 155 LAGMETQ-VVGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNGHCKDAMQ 213
Query: 134 LFK 136
+F+
Sbjct: 214 VFQ 216
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 12/153 (7%)
Query: 12 IPWNLLLKACIK---AKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGT 66
+ WN L+ A + KD V +L++ G + + + ++++C N + L G
Sbjct: 193 VSWNALIAANAQNGHCKDAMQVFQLMDLD----GSVRPNDATFVSVVDACSNLLDLPRGK 248
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSL---SWTFIISARV 123
+ + G S+ VGN L+N+ +CG +D A L F+ ++ L SWT II+A
Sbjct: 249 STHERIIRTGFDSYLFVGNSLVNMYGKCGSVDHARLVFEKMRLRDVLSVYSWTVIIAAFA 308
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
++GH EA LF N TF + L+A
Sbjct: 309 HNGHLLEAFVLFYKMDLEGVLPNKVTFVTVLRA 341
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 109/239 (45%), Gaps = 20/239 (8%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L A YE +L ER+ L D + +L++C + ++A+ Y
Sbjct: 495 VAWNSMLSAFASNGCYERSLKLYERMLLEGTKPDKITYLAVLDACQSV------SEARRY 548
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN-SLSWTFIISARVNHGHPSE 130
L A N ++ +RCG + +A AF + KN +++W +IS HG +
Sbjct: 549 AATFELELDIAARNAAVSAYARCGSLKEAKAAFDAIQWKNNAVTWNAMISGLAQHGESKQ 608
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF--LSMEEVYHIEPSEEHYSI 188
AL+ F + N T+ ++L+A + + + +L + +E ++ S +
Sbjct: 609 ALECFWKMELEGVRANSVTYLASLEACSSLKDLTRGRQLHARILLENIHEANLS----NA 664
Query: 189 MVEALGRAGMFEEVL-EFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
++ G+ G +E + EF+K +P + + W T++ + HG + AL+ ++D
Sbjct: 665 VINMYGKCGSLDEAMDEFVK--MPERDV-ISWNTMIATYAQHGS---GRQALEFFKQMD 717
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 8/184 (4%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+++SCL P L Q A+M G S + CL+ + +CG +D A F++ E++
Sbjct: 434 VMDSCLRPEDLPRAEQIHAHMVASGFESDVVLQVCLVTMYGKCGSVDSAWSIFENLKERS 493
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
++W ++SA ++G +L L++ T + T+ + L A V EA R
Sbjct: 494 VVAWNSMLSAFASNGCYERSLKLYERMLLEGTKPDKITYLAVLDA---CQSVSEARRYAA 550
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231
+ E +E + V A R G +E I K + W ++ HG+
Sbjct: 551 TFE----LELDIAARNAAVSAYARCGSLKEAKAAFDAI-QWKNNAVTWNAMISGLAQHGE 605
Query: 232 MKLA 235
K A
Sbjct: 606 SKQA 609
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 1/145 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + + + E +++L +S + L +C + L G Q A
Sbjct: 591 VTWNAMISGLAQHGESKQALECFWKMELEGVRANSVTYLASLEACSSLKDLTRGRQLHAR 650
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ I + N +IN+ +CG +D+A F PE++ +SW +I+ HG +A
Sbjct: 651 ILLEN-IHEANLSNAVINMYGKCGSLDEAMDEFVKMPERDVISWNTMIATYAQHGSGRQA 709
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
L+ FK + + T+ A+ A
Sbjct: 710 LEFFKQMDLEGWTPDRATYLGAIDA 734
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L C G ++ G + + N LI + ++CG + DA F+ P N
Sbjct: 32 LLQKCAEQKSAAAGKLVHQHILSSGCGVNRYLQNHLIFMYAKCGCLQDAVEVFELLPCPN 91
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
SWT +I+A GH E L F+ Q T + F + L A + G + E
Sbjct: 92 VFSWTALITAYAKEGHLREVLGFFRKMQLDGTKPDAFVFSTVLTACSSAGALNEG 146
>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 558
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/409 (26%), Positives = 199/409 (48%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQA 70
+ W+ ++ + + +L E++QL + D ++ ++++ + L +G +A
Sbjct: 151 VSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRA 210
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
++ + GL A+G LI++ SRCG ID++ + F+ +N L+WT +I+ HG +E
Sbjct: 211 FIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTE 270
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL +F + + TF L A + GLV E + +F S+ +VY ++P +HY MV
Sbjct: 271 ALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYRMDPLLDHYGCMV 330
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL-------- 242
+ LGRAG+ E +F++ + P K +IWRTLL + H ++ LA+ K+
Sbjct: 331 DILGRAGLLNEAYDFVERM-PMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKISSSQN 389
Query: 243 --LELDPGMY--VGCWIE-----------------------IQNKIYEFVSNEE---LTS 272
L L +Y G W+E + I+EFVS + +
Sbjct: 390 GDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQTIHEFVSGDNSHPQSE 449
Query: 273 EVSDKLAEIEENMKELGFVLN--------------RSL-YQTKMKAVALGLISFPHGMPT 317
+++ L+ I +++ G+++ SL Y ++ AVA ++S
Sbjct: 450 DITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSYHSEKLAVAFAILSMKDKRTI 509
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C HS + +S ER+++++D FHHF+ G CSC D +
Sbjct: 510 RIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFEKGLCSCHDYW 558
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 11/190 (5%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D+++ +L +C L + + + K GL S V N LI + CG ++ A
Sbjct: 85 LDNFTFPFVLKACSR---LQINLHLHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKV 141
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM-NPTTFRSALKAYALMG- 161
F E++S+SW+ +I++ +N+G+ SEALDLF+ Q + + T S + A + +G
Sbjct: 142 FDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGD 201
Query: 162 -LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWR 220
+G R F+ + S + +++ R G +E + + + + L W
Sbjct: 202 LELGRWVRAFIGR---LGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNV--LTWT 256
Query: 221 TLLLSSRVHG 230
L+ VHG
Sbjct: 257 ALINGLGVHG 266
>gi|147834943|emb|CAN70199.1| hypothetical protein VITISV_021220 [Vitis vinifera]
Length = 627
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 183/379 (48%), Gaps = 42/379 (11%)
Query: 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRG 76
L+ C + K E V EL+E+ D+ + NSC +P LL + + +
Sbjct: 258 LMNLCQEGKVKEAV-ELMEKGVRA----DAQCFYALFNSCGSPKLLEEAKKVHDFFLQST 312
Query: 77 LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
S + N ++ + CG + DA F ++ SW +I+ N+ + L L++
Sbjct: 313 FRSDLQLNNKVLEMYGNCGSMTDARRVFDHMTNRDMDSWHLMINGYANNAMGDDGLQLYE 372
Query: 137 DKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALG 194
Q R + P TF + L A V E + F SM+ Y I P+ EHY +++ LG
Sbjct: 373 --QMRKLGLEPNEQTFLAVLSTCASAEAVEEGFIHFESMKTEYGITPTFEHYVGIIDVLG 430
Query: 195 RAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGC- 253
++G E EFI+ + P + ++W L+ +++HGD+ L +A + ++ LDP V
Sbjct: 431 KSGHVIEAKEFIEQM-PVEPSAVVWEALMNYAKIHGDIDLEDHAEELMVALDPLKAVANK 489
Query: 254 -------------WIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRS----- 295
++ +N++ EF N L + +KL + MKE G+V +
Sbjct: 490 TPTPPPKKRTAINMLDGKNRLSEF-RNPTLYKD-DEKLKSLN-GMKEAGYVPDTRYVLHD 546
Query: 296 ----------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELV 345
LY ++ A+A GLIS P P R+IK++ +CG H+A + MS I+ REL+
Sbjct: 547 IDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSKIVGRELI 606
Query: 346 VKDPGSFHHFKDGKCSCKD 364
V+D FHHFKDGKCSC D
Sbjct: 607 VRDNKRFHHFKDGKCSCGD 625
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/410 (26%), Positives = 188/410 (45%), Gaps = 58/410 (14%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
EI W+ ++ I+ + E+ ++Q + + +L++C N L+ G
Sbjct: 268 EISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHT 327
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y + + +G L+++ ++CG+ID A F+ K SW +I HG +
Sbjct: 328 YAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAED 387
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+DLF N TF L A A GLV + +F SM + Y +EP EHY +V
Sbjct: 388 AIDLFSKMD---IYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIV 444
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG+ E + + I P + P +W LL + R HG+++L + LLEL+P
Sbjct: 445 DLLGRAGLLTEAEKVVSSI-PTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNS 503
Query: 248 GMYV---------GCWIEI------------------------QNKIYEFVSNEELTSEV 274
G Y G W E+ + ++++F+ + +V
Sbjct: 504 GRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQV 563
Query: 275 SD---KLAEIEENMKELGFVLNRS--------------LYQTKMK-AVALGLISFPHGMP 316
D L +++E ++ G+ + S ++Q K A+ GLI+ G
Sbjct: 564 KDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTT 623
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C HSA + +S + RE++V+D +HHF++G CSCKD +
Sbjct: 624 IRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 673
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 120/285 (42%), Gaps = 45/285 (15%)
Query: 14 WNLLLKACIKAKD--------YEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
WN ++K CI+ + YEMV + + Y+ +L +C + ++ G
Sbjct: 106 WNCMIKVCIENNEPFKAILLYYEMV--------VAHSRPNKYTYPAVLKACSDSGVVAEG 157
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST-PEKNSLSWTFIISARVN 124
Q A++ K GL + + I + + G++ +A E +++ W +I +
Sbjct: 158 VQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLR 217
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
G A +LF+ R SM +T+ + + ++ G+V A F M+E I
Sbjct: 218 FGEVEAARELFEGMPDR--SM-ISTWNAMISGFSRCGMVEVAREFFDEMKERDEIS---- 270
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLA--------- 235
+S M++ + G F E LE + K+ P R +L S + L
Sbjct: 271 -WSAMIDGYIQEGCFMEALEIFHQMQKEKIRP---RKFVLPSVLSACANLGALDQGRWIH 326
Query: 236 KYALDKLLELDP-------GMYVGCW-IEIQNKIYEFVSNEELTS 272
YA ++LD MY C I++ +++E +SN+E++S
Sbjct: 327 TYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSS 371
>gi|357147690|ref|XP_003574443.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Brachypodium distachyon]
Length = 859
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/408 (25%), Positives = 184/408 (45%), Gaps = 64/408 (15%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+L+ + ++ + ++Q D ++ I+ + N + + A +
Sbjct: 461 WNILIAGSVHNGYFDRALRIFRQMQAVLIKPDYITVLSIIPAFANLVAAWKVREIHACIF 520
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
L + N LIN S+ G + A F +N +SW II A + HG P+E L+
Sbjct: 521 HHNLEIDGKIANALINAYSKSGDLAGACAVFDRHSSRNIISWNCIIVAHLLHGSPTEVLN 580
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
F + + + TT + +KAY + +V E +FL+ME+ Y++ P +HY+ MV+ L
Sbjct: 581 HFYKMKQQGVLPDHTTLTAVIKAYGMEAMVSEGREIFLNMEKNYNVTPDLDHYTAMVDLL 640
Query: 194 GRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLELDPG--- 248
GR+G +E E I + L P +W LL S+ +HG+++LA A ++ +++P
Sbjct: 641 GRSGRLQEAYELIDEM---PLTPNLTVWEALLTSAIMHGNVRLAHLAATEMSDIEPSDLR 697
Query: 249 --MYVG-----------------------------CWIEIQNKIYEFVSNEELTSE---- 273
M V C EI+N +Y F + + + SE
Sbjct: 698 IQMVVSGLQDLAGKSFDVPKLTVHNKGRMLDGIECCSTEIKNIVYLFSTGDNVASEHIVA 757
Query: 274 ---------------VSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPHGMPTR 318
+S ++EE +E+ + L A+ALG+ + P R
Sbjct: 758 ELELIMMQIGLSMLDISSGTLDVEEEKEEVAGIHCEKL------AIALGISNSPQFRSIR 811
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+IK+ MC + H+ + +S R++++KDP H F++GKCSC+D +
Sbjct: 812 IIKTTRMCNHCHTFAKLVSEKYGRQILIKDPKCLHKFENGKCSCEDYW 859
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 96/231 (41%), Gaps = 36/231 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQ-------------LCCGFIDS------------ 46
+ WN L+ + ++ D + ELLE+++ L GF+ S
Sbjct: 253 VTWNTLISSYARSGDLNVAVELLEQMEESGVEPDVVTWTSLVSGFVHSDRGVEALQCFIR 312
Query: 47 ----------YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGK 96
+I +++C + LLN G+ + K G + + GN L+++ ++CG+
Sbjct: 313 MRLAGVEPNGMTIACAISACASLKLLNQGSMLHCHAIKVGSVKNVLSGNSLVDMYAKCGE 372
Query: 97 IDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
A F PEK+ SW +++ G+ +A +LF + N T+ + +
Sbjct: 373 TVAASRIFNQIPEKDIFSWNSMVAGYAQAGYCGKAYELFCKMENYGIRRNAITWNTMISG 432
Query: 157 YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK 207
Y G A+ LF +ME Y ++ ++I++ G F+ L +
Sbjct: 433 YIRNGDDERAFELFQTMES-YGVKRDTASWNILIAGSVHNGYFDRALRIFR 482
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 5/172 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHP---AVGNCLININSRCGKIDDAD 101
D + I IL +C L +GT + +RG + V N ++ + +CG++ A
Sbjct: 147 DRFLITRILQACAYAEDLELGTVLHSMAIRRGFMGREKDVPVSNSVLVMYVKCGELGFAR 206
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+ F+ ++ +W +I EA L D + T+ + + +YA G
Sbjct: 207 VVFEKMGRRDLGTWNSMIFGCCRSCKWEEARRLLDDMRKEGIEPGVVTWNTLISSYARSG 266
Query: 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE-FIKGIVPG 212
+ A L MEE +EP ++ +V + E L+ FI+ + G
Sbjct: 267 DLNVAVELLEQMEE-SGVEPDVVTWTSLVSGFVHSDRGVEALQCFIRMRLAG 317
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L +G Y G+ +G+ LI++ S+CG I+ A F+ P +N ++W+ +I+
Sbjct: 290 LELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMING 349
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
HG +A+D F + + + + L A + GLV E R F M V +EP
Sbjct: 350 FAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEP 409
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
EHY MV+ LGR+G+ +E EFI + P K +IW+ LL + R+ G++++ K +
Sbjct: 410 RIEHYGCMVDLLGRSGLLDEAEEFILNM-PIKPDDVIWKALLGACRMQGNVEMGKRVANI 468
Query: 242 LLEL---DPGMYV---------GCW-----------------------IEIQNKIYEFVS 266
L+++ D G YV G W I+I ++EFV
Sbjct: 469 LMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVV 528
Query: 267 NEE---LTSEVSDKLAEIEENMKELGF------VL---------NRSLYQTKMKAVALGL 308
++ E++ L EI + ++ G+ VL N Y ++ A A GL
Sbjct: 529 EDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGL 588
Query: 309 ISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
IS G P R++K++ +C HS+ + +S + +R++ V+D FHHF+DG CSC D +
Sbjct: 589 ISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
Length = 679
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 105/389 (26%), Positives = 181/389 (46%), Gaps = 58/389 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ C++ ++ + +++ + + S I+ +C + L++G Q Y
Sbjct: 263 ISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGY 322
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + + + L+++ ++CG I A F + +SWT +I HGH +A
Sbjct: 323 IIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDA 382
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LFK + N F + L A + GLV EA++ F SM + Y I P EHY+ + +
Sbjct: 383 ISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVAD 442
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPL--IWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
LGR G EE EFI + + P +W TLL + RVH +++LA+ KL +DP
Sbjct: 443 LLGRVGRLEEAYEFISDM---HIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQN 499
Query: 248 -GMYV-------------------------------GC-WIEIQNKIYEFVSNEE---LT 271
G YV C WIEI+NK++ FV+ ++
Sbjct: 500 IGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYY 559
Query: 272 SEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMP 316
+++ L + E M+ G+VL+ + ++ A+ G+IS P G
Sbjct: 560 DRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTT 619
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELV 345
RV K++ +C H+A +F+S I+ RE+V
Sbjct: 620 IRVTKNLRVCVDCHTATKFISKIVGREIV 648
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS+++ +L + L G + Y + G + +G+ LI++ ++C ++DD+ F
Sbjct: 195 DSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVF 254
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
P+ + +SW II+ V +G E L F+ N +F S + A A
Sbjct: 255 YMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACA 308
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 161/339 (47%), Gaps = 62/339 (18%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
VG LI++ +CG ++DA F S +K+ + W +I+ HG +AL++F Q R
Sbjct: 300 VGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFS--QLRS 357
Query: 143 TSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
+ PT TF L A + GLV E ++ F SMEE Y I P EHY MV+ LGRAG+ E
Sbjct: 358 QGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIE 417
Query: 201 EVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLE---LDPGMY----- 250
E ++ + + P ++W +LL + R+H +M L + D L+ + GMY
Sbjct: 418 EAFHLVQSMT---IAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSN 474
Query: 251 ----VGCW-----------------------IEIQNKIYEFVSNE---ELTSEVSDKLAE 280
VG W IE+ K+YEFV+ + T E+ L +
Sbjct: 475 IYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEK 534
Query: 281 IEENMKELGFVLNRSLY------QTKMK---------AVALGLISFPHGMPTRVIKSVGM 325
+ +KE G V L TK K AVA GLIS G +++K++
Sbjct: 535 MNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRA 594
Query: 326 CGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
C H+ + +S I R++V +D FHHF DG C+C D
Sbjct: 595 CADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGD 633
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 62/151 (41%), Gaps = 2/151 (1%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
++ ++ G +DDA F P K+ + W +I HG P+EAL LF+
Sbjct: 200 TAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVD 259
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
+ AL A A +G L ++ ++ + + +++ + G E+ +
Sbjct: 260 PDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVS 319
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLA 235
I G ++W ++ +HGD + A
Sbjct: 320 VFNSI--GDKDIVVWNAMINGYAMHGDSRKA 348
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 161/339 (47%), Gaps = 62/339 (18%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
VG LI++ +CG ++DA F S +K+ + W +I+ HG +AL++F Q R
Sbjct: 299 VGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFS--QLRS 356
Query: 143 TSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
+ PT TF L A + GLV E ++ F SMEE Y I P EHY MV+ LGRAG+ E
Sbjct: 357 QGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIE 416
Query: 201 EVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLE---LDPGMY----- 250
E ++ + + P ++W +LL + R+H +M L + D L+ + GMY
Sbjct: 417 EAFHLVQSMT---IAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSN 473
Query: 251 ----VGCW-----------------------IEIQNKIYEFVSNE---ELTSEVSDKLAE 280
VG W IE+ K+YEFV+ + T E+ L +
Sbjct: 474 IYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEK 533
Query: 281 IEENMKELGFVLNRSLY------QTKMK---------AVALGLISFPHGMPTRVIKSVGM 325
+ +KE G V L TK K AVA GLIS G +++K++
Sbjct: 534 MNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRA 593
Query: 326 CGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
C H+ + +S I R++V +D FHHF DG C+C D
Sbjct: 594 CADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGD 632
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 62/151 (41%), Gaps = 2/151 (1%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
++ ++ G +DDA F P K+ + W +I HG P+EAL LF+
Sbjct: 199 TAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVD 258
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
+ AL A A +G L ++ ++ + + +++ + G E+ +
Sbjct: 259 PDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVS 318
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLA 235
I G ++W ++ +HGD + A
Sbjct: 319 VFNSI--GDKDIVVWNAMINGYAMHGDSRKA 347
>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g13270, chloroplastic; Flags: Precursor
gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 752
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 187/404 (46%), Gaps = 50/404 (12%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQ-LCCGFIDSYSICDILNSCLNPILLNVGTQAQ 69
++ W+ ++ + +E + + ++ ++S++ I +C N+G Q
Sbjct: 351 DVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVH 410
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
A KR LI + LI + S+CG +DDA+ F+S + ++WT IS +G+ S
Sbjct: 411 ADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNAS 470
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
EAL LF+ N TF + L A + GLV + +M Y++ P+ +HY M
Sbjct: 471 EALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCM 530
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249
++ R+G+ +E L+F+K + P + + W+ L H +++L + A ++L +LDP
Sbjct: 531 IDIYARSGLLDEALKFMKNM-PFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPED 589
Query: 250 YVG-----------------------------------CWIEIQNKIYEFVSNEE---LT 271
G WI+ + KI+ F+ ++ T
Sbjct: 590 TAGYVLPFNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQT 649
Query: 272 SEVSDKLAEIEENMKELGFVLNRS------LYQTKMKAVALGLISFPHG---MPTRVIKS 322
E+ +KL E + M+ F N + L ++ A+A GLIS HG P +V K+
Sbjct: 650 QEIYEKLKEFDGFMEGDMFQCNMTERREQLLDHSERLAIAFGLISV-HGNAPAPIKVFKN 708
Query: 323 VGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ C H + +S + E+V++D FHHFK+GKCSC D +
Sbjct: 709 LRACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW 752
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS+ +L +C + LN+G Q A + K GL S +VG L++ +C + A AF
Sbjct: 284 DSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAF 343
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS-MNPTTFRSALKAYALMG 161
+ E N +SW+ IIS EA+ FK + + S +N T+ S +A +++
Sbjct: 344 QEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLA 401
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L S +NP L+ G Q A++ + GL S+ ++ ++N+ +CG + A F K
Sbjct: 190 LLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKK 249
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
++ T ++ G +AL LF D + F LKA A
Sbjct: 250 PVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACA 296
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 15 NLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTK 74
NL L + K + E L+ + + SYS + +C L+ G M
Sbjct: 52 NLHLVSLSKHRKLNEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRM-- 109
Query: 75 RGLISHPAV--GNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
R I +P+V NC++ + C ++DAD F E N++S T +ISA G +A+
Sbjct: 110 RMGIENPSVLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAV 169
Query: 133 DLF 135
LF
Sbjct: 170 GLF 172
>gi|147799436|emb|CAN76870.1| hypothetical protein VITISV_012312 [Vitis vinifera]
Length = 420
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 173/371 (46%), Gaps = 55/371 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+++I +++SC L G G+ V + L+++ S+CG+ DA + F
Sbjct: 9 DNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVF 68
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
K +N +SW +I +G EAL L+++ + TF L A GLV
Sbjct: 69 KRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVE 128
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
F S+ +++ P+ +HYS M+ LGRAG ++ ++ IK + C LIW TLL
Sbjct: 129 RGQGYFYSISKIHGXNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNC-LIWSTLLS 187
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMYVGC--------------------- 253
R++ D+ + A L ELDP +Y C
Sbjct: 188 VCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKF 247
Query: 254 ----WIEIQNKIYEFVSNEELTSE---VSDKLAEIEENMKELGFVLNRSL---------- 296
WIEI +++++FV+ + SE + DKL + + ++E GF + +L
Sbjct: 248 AAYSWIEIDSQVHKFVAEDRTHSETEQIYDKLNRLIKKLQESGFTPDTNLVLHDVVEEEK 307
Query: 297 -----YQTKMKAVALGLISFPHG-MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
Y ++ A+A LI PHG P R++K++ +CG H +F+S II R ++++D
Sbjct: 308 FDSICYHSEKLALAFWLIKKPHGRTPIRIMKNIRVCGDCHVFMKFVSKIIRRPIILRDIN 367
Query: 351 SFHHFKDGKCS 361
FHHF +G+ +
Sbjct: 368 RFHHFVEGRAN 378
>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
Length = 607
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/349 (28%), Positives = 162/349 (46%), Gaps = 54/349 (15%)
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
++ + G+ + N LI+ ++CG +D A F+ E+ +SWT +I A G E
Sbjct: 260 FVEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKE 319
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+ +F+ + + F L A + G+V E Y F SM+ Y I+P EHY MV
Sbjct: 320 AVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMV 379
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM- 249
+ GRAGM E +EFI +P K P+IWRTL+ + R HG ++L + LL P
Sbjct: 380 DMFGRAGMVERAMEFIH-TMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEYPAHE 438
Query: 250 --YV-------------------------------GC-WIEIQNKIYEFVSNEELTSEVS 275
YV GC +E+ +++EF++ +E +
Sbjct: 439 ANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWK 498
Query: 276 DKLAEIEENMKELGFVLNRSL------------------YQTKMKAVALGLISFPHGMPT 317
+ +EE +EL V + S + ++ A+A L+ P G
Sbjct: 499 EIYMMVEEMARELKHVGHISATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQV 558
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV+K++ +C H+A + +S + RE++V+D FH FK+G CSC D +
Sbjct: 559 RVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 607
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 45 DSYSICDILNSCLN-PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGK--IDDAD 101
+ ++ +L +C P VG QA A K G + V N LI++ S G + DA
Sbjct: 130 NKFTFPFLLKACAALPGFPGVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGEFLGDAR 189
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
F + + ++W+ +I V G S+A+ LF++ Q
Sbjct: 190 NVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQ 227
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 120/449 (26%), Positives = 197/449 (43%), Gaps = 90/449 (20%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERI---------------QLCCGFIDSY-- 47
SLI + WN ++ +K+ D++ EL ++ +L F+D+
Sbjct: 186 SLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKM 245
Query: 48 --------------SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSR 93
++ +L++ +L G +YM K G +G LI + ++
Sbjct: 246 FFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAK 305
Query: 94 CGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSA 153
CG I+ A F++ +K WT II HG + AL LF + N F
Sbjct: 306 CGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGV 365
Query: 154 LKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKG--IVP 211
L A GLV + + F M Y IEP+ EHY +V+ L RAG EE I+ I P
Sbjct: 366 LNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISP 425
Query: 212 GKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW----- 254
K+ IW +LL SR HG + + +YA +++E+ P G Y+ G W
Sbjct: 426 NKV---IWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSH 482
Query: 255 ------------------IEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLN 293
+E + ++EF+ + T E+ K++E++E +K +G V +
Sbjct: 483 VREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPD 542
Query: 294 RSLY----------------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMS 337
+ ++ A+A GLI+ G+P R++K++ +C HS + +S
Sbjct: 543 TTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLS 602
Query: 338 TIIERELVVKDPGSFHHFKDGKCSCKDAY 366
I RE++V+D FHHFK+G CSC D +
Sbjct: 603 KIYSREIIVRDNCRFHHFKNGSCSCMDYW 631
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 32/181 (17%)
Query: 12 IPWNLLLKACIKAKD--------YEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLN 63
I WN ++K ++ + +E+VHE L D++++ ++ C ++
Sbjct: 82 IHWNTIIKCYVENQFSHDGIVLFHELVHEYLP---------DNFTLPCVIKGCARLGVVQ 132
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK-----------NS 112
G Q K G S V L+N+ S+CG+ID A F +K N
Sbjct: 133 EGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNL 192
Query: 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS 172
+SW +I+ + G AL+LF ++ + T+ + Y L G +A ++F
Sbjct: 193 VSWNAMINGYMKSGDFDSALELF----YQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFM 248
Query: 173 M 173
M
Sbjct: 249 M 249
>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 591
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 114/413 (27%), Positives = 187/413 (45%), Gaps = 59/413 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQL---CCGFIDSYSICDILNSCLNPILLNVGTQA 68
+ WN+L+ ++ K V L ++++ C D+ + L +C N L+ G Q
Sbjct: 180 VSWNVLISCYLRNKRTRDVLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQV 239
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
++ + GL + N L+++ SRCG +D A F E+N +SWT +IS +G
Sbjct: 240 HDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFG 299
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE-VYHIEPSEEHYS 187
EA++ F + S T L A + GLV E F M + I+P+ HY
Sbjct: 300 KEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYG 359
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL-- 245
+V+ LGRA + ++ IK + K IWRTLL + RVHG+++L + + L+E
Sbjct: 360 CIVDLLGRARLLDKAYSLIKSM-EMKPDSTIWRTLLGACRVHGNVELGERVIAHLIEFKA 418
Query: 246 -DPGMYV---------GCW-----------------------IEIQNKIYEFVSNE---E 269
+ G YV G W IE+Q ++EF+ ++
Sbjct: 419 EEAGDYVLLLNTYSSVGKWEKVTELRSLMKKKRIQTNPGCSAIELQGTVHEFIVDDVSHP 478
Query: 270 LTSEVSDKLAEIEENMKELGFVLNRS----------------LYQTKMKAVALGLISFPH 313
E+ LAEI + +K G+V + Y ++ A+A G++ P
Sbjct: 479 RKEEIYKMLAEINQQLKIAGYVAEITSELHNLDSEEEKGYALRYHSEKLAIAFGILVTPP 538
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV K++ C H+ +F+S + +R ++V+D FHHFK G CSC D +
Sbjct: 539 ETTIRVTKNLRTCVDCHNFAKFVSDVYDRVVIVRDRSRFHHFKGGSCSCNDFW 591
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/410 (26%), Positives = 189/410 (46%), Gaps = 56/410 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ +K + L R+++ +D + +L++C L G
Sbjct: 199 VSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHK 258
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ K G++ + +I++ +CG +D A F K SW +I HG +
Sbjct: 259 YVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGED 318
Query: 131 ALDLFKD-KQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
A+ LFK+ ++ + + TF + L A A GLV E + F M +V+ I+P++EHY M
Sbjct: 319 AIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCM 378
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
V+ L RAG EE + I + P + LL + R+HG+++L + ++++ELDP
Sbjct: 379 VDLLARAGRLEEAKKVIDEM-PMSPDAAVLGALLGACRIHGNLELGEEVGNRVIELDPEN 437
Query: 248 --------GMYVGC--W-----------------------IEIQNKIYEFVS---NEELT 271
MY C W IE++ + EFV+ + L
Sbjct: 438 SGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIEMEGVVNEFVAGGRDHPLA 497
Query: 272 SEVSDKLAEIEENMKELGFVL---------------NRSLYQTKMKAVALGLISFPHGMP 316
+ K+ E+ E+++ +GFV N Y ++ A+A GL+ G
Sbjct: 498 EAIYAKIYEMLESIRVVGFVPDTDGVLHDLVEEERENPLFYHSEKLAIAYGLLKTKRGET 557
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV K++ +C H A + +S + + +++++D FHHF +G+CSCKD +
Sbjct: 558 LRVTKNLRVCKDCHQASKMISKVYDCDIIIRDRSRFHHFSNGECSCKDYW 607
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 3/135 (2%)
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q A++ K G N LI++ G +DDA F + + N +SWT ++S G
Sbjct: 121 QLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWG 180
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
EA +F + N ++ + + + EA+ LF M +E
Sbjct: 181 LVDEAFRVF---ELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVA 237
Query: 187 SIMVEALGRAGMFEE 201
+ M+ A G E+
Sbjct: 238 ATMLSACTGVGALEQ 252
>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
Length = 504
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 110/407 (27%), Positives = 178/407 (43%), Gaps = 55/407 (13%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN L+ +K ++ R+Q ++ IL C L G + A +
Sbjct: 99 WNSLISGFVKEDKLGEALDVFRRMQREGMGFSWVTLTTILPICARVTALLSGKEIHAQIV 158
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K V N L+++ +CG +D F K+ SW +++ +G+ A+D
Sbjct: 159 KSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTGYAINGYMRVAMD 218
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF + + TF + L + GL + +LF ME + + PS EHY+ +V+ L
Sbjct: 219 LFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQKLFHRMEMDFGVSPSLEHYACLVDML 278
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DPGMY 250
GRAG + L +K + P K IW +LL S R+H ++ LA+ ++L EL +PG Y
Sbjct: 279 GRAGRIDAALVVVKNM-PMKTSGSIWGSLLNSCRLHNEVPLAEAIANRLFELEPYNPGNY 337
Query: 251 V-------------------------------GC-WIEIQNKIYEFVSNEELTSEVSDKL 278
V GC WI+++NKI+ FV+ SD+
Sbjct: 338 VMLSNIYANAGMWDSVNMVREMMQTRRIRKEAGCSWIQVKNKIHSFVAGGGFEFRNSDEY 397
Query: 279 AEI----EENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGMPTRV 319
+I E M+E G++ N + ++ A LI GMP R+
Sbjct: 398 KKIWNKLREAMEEFGYIPNTDVVLHDVNEETKAMWVCGHSERLATVFSLIHTAAGMPIRI 457
Query: 320 IKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
K++ +C HS + +S + R +V++D FHHFK+G CSC D +
Sbjct: 458 TKNLRVCVDCHSWIKIVSRVTGRVIVLRDTNRFHHFKEGACSCNDYW 504
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%)
Query: 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK 105
+++ L +C + L VG A + K V N L+ + ++C ++ F
Sbjct: 30 NFAFSTALKACADLRELWVGRGVHAQVVKSSEGPDQVVNNGLLRLYTQCECFNEVLKVFD 89
Query: 106 STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
PE+N SW +IS V EALD+F+ Q
Sbjct: 90 QMPERNVASWNSLISGFVKEDKLGEALDVFRRMQ 123
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 113/415 (27%), Positives = 184/415 (44%), Gaps = 68/415 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W ++ C++ + E + + + + + +L + L G + +
Sbjct: 232 ISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSI 291
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
++G L+++ ++CG ID++ F PEK+ SW +I HG EA
Sbjct: 292 ANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEA 351
Query: 132 LDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
L LF+ ++ +P TF L A + GLV E F M + Y IEP EHY M
Sbjct: 352 LALFE--KFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCM 409
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
V+ L RAG + +E I + P P++W ++L S +VHG ++L + +KL+++DP
Sbjct: 410 VDLLSRAGFVYDAVEMINRM-PAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMDPTH 468
Query: 248 -GMYV------------------------------GCW--IEIQNKIYEFVSNE---ELT 271
G YV W IE + +++ FV+ + E T
Sbjct: 469 NGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDKEHERT 528
Query: 272 SE--------------------VSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISF 311
+E VS L +IEE KE N ++ A+A GL+
Sbjct: 529 TEIYKMLEIMGVRIAAAGYSANVSSVLHDIEEEEKE-----NAIKEHSERLAIAFGLLVT 583
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G R+IK++ +CG H + +S + ERE++V+D FHHFK G CSC+D +
Sbjct: 584 KDGDCIRIIKNLRVCGDCHEVSKIISLVFEREIIVRDGSRFHHFKKGICSCQDYW 638
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 35/167 (20%)
Query: 38 QLCCGFI---DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC 94
+C F+ + +++ +L +C N + G Q Q ++ K G + V N LI++ C
Sbjct: 122 HMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTC 181
Query: 95 --------------------------------GKIDDADLAFKSTPEKNSLSWTFIISAR 122
G+I A F PEK+ +SW IIS
Sbjct: 182 CRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGC 241
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
V +G +ALD FK+ + N S L A A +G + R+
Sbjct: 242 VQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKRI 288
>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g08820
gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 685
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 176/375 (46%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +SI L+SC + L++G + + + +++ + N LI++ ++CG + F
Sbjct: 312 DQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVF 371
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
K EK+ + IS +GH + +F + S + +TF L GL+
Sbjct: 372 KEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQ 431
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ R F ++ VY ++ + EHY MV+ GRAGM ++ I + P + ++W LL
Sbjct: 432 DGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDM-PMRPNAIVWGALLS 490
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYVG----------------------------- 252
R+ D +LA+ L +L+ L+P G YV
Sbjct: 491 GCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKI 550
Query: 253 ---CWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL---------- 296
WIE++ K++EF+++++ L+ ++ KL ++ M+ +GFV
Sbjct: 551 PGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEK 610
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ AVALGLIS HG RV+K++ +CG H + +S I RE+VV+D
Sbjct: 611 ERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNR 670
Query: 352 FHHFKDGKCSCKDAY 366
FH F +G CSC D +
Sbjct: 671 FHCFTNGSCSCNDYW 685
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 51/91 (56%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DSY I +L++C++ L+ G YM + + + V L+N+ ++CGK++ A F
Sbjct: 211 DSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVF 270
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
S EK+ ++W+ +I ++ P E ++LF
Sbjct: 271 DSMVEKDIVTWSTMIQGYASNSFPKEGIELF 301
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 4/135 (2%)
Query: 6 LISDVEIP----WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL 61
L S + P +N L+ + + +L I+ ++ ++ +L +C
Sbjct: 67 LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
+G + + K G A L++I S G+++DA F P+++ ++WT + S
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSG 186
Query: 122 RVNHGHPSEALDLFK 136
G EA+DLFK
Sbjct: 187 YTTSGRHREAIDLFK 201
>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
Length = 619
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 161/347 (46%), Gaps = 54/347 (15%)
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
++ K G+ + N LI+ ++CG +D A F+ E+ +SWT +I A G E
Sbjct: 272 FVEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKE 331
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+ +F++ + + F L A + G+V E Y F SM Y I+P EHY MV
Sbjct: 332 AVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMV 391
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM- 249
+ GRAGM E +EF+ + P K P+IWRTL+ + R HG ++L + LL P
Sbjct: 392 DMFGRAGMVERAMEFVHKM-PMKPNPIIWRTLVAACRAHGRLELGETITRNLLNEYPAHE 450
Query: 250 --YV-------------------------------GC-WIEIQNKIYEFVSNEELTSEVS 275
YV GC +E+ +++EF++ +E +
Sbjct: 451 ANYVMLSNVYALTRRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWK 510
Query: 276 DKLAEIEENMKEL---GFVLNRS---------------LYQTKMKAVALGLISFPHGMPT 317
+ +EE +EL G + S + ++ A+A L+ P G
Sbjct: 511 EIYMMVEEMARELRRAGHISATSEVLLDLDEEDKEVALQWHSEKLAIAFVLLRTPPGTQV 570
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
RV+K++ +C H+A + +S + RE++V+D FH FK+G CSC D
Sbjct: 571 RVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCND 617
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGK--IDDADLAFKSTPEKNSLSWTFIIS 120
VG QA A K G + V N LI++ S G + DA F + ++++W+ +I
Sbjct: 161 GVGVQAHAAALKFGFTTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIG 220
Query: 121 ARVNHGHPSEALDLFKDKQ 139
V G S+A+ LF++ Q
Sbjct: 221 GYVRSGLSSDAVGLFREMQ 239
>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 682
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 109/406 (26%), Positives = 182/406 (44%), Gaps = 54/406 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ A + + YE +L +++ + ++ LNSC L G A
Sbjct: 276 VSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTGNALGAC 335
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G H V N L+N+ S+ G I+DA F S P ++ +SW II+ +HG E
Sbjct: 336 VMKTGHWDHLLVSNALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREG 395
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
++ F + TF L A A +GLV EA+ +M + I P +EHY+ MV
Sbjct: 396 MEAFHSMLSAAVIPSYVTFVGVLSACAQLGLVDEAFYYLNTMMKEVGITPGKEHYTCMVG 455
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
L R G +E FI G + WR+LL S +V+ + L +++L+L+P G
Sbjct: 456 LLCRVGRLDEAERFIVNNCIGTDV-VAWRSLLNSCQVYKNYGLGHRVAEQILQLEPSDVG 514
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEEL---TSE 273
YV WI + + ++ F S E++ +
Sbjct: 515 TYVLLSNMYAKANRWDGVVKVRKHMRERAVRKSPGVSWIHVGSDVHVFTSEEKVHPQMDQ 574
Query: 274 VSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPTR 318
++ KL E+ + +K +G+V N + +Y ++ A+A GLI P G
Sbjct: 575 IAKKLEELIDQIKAIGYVPNFAVVLHDIDDERKEEHLMYHSEKLALAFGLIHTPKGATIH 634
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
++K++ +C H A + +S + R++VV+D FH + G CSC D
Sbjct: 635 IMKNLRICDDCHVAIKLISVVTSRKIVVRDAVRFHCIEGGICSCND 680
>gi|358248494|ref|NP_001239891.1| uncharacterized protein LOC100783921 [Glycine max]
gi|255636013|gb|ACU18351.1| unknown [Glycine max]
Length = 449
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 110/382 (28%), Positives = 177/382 (46%), Gaps = 37/382 (9%)
Query: 13 PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSI-CDILNSCLNPILLNVGTQAQAY 71
P N+ L A + + + V EL+ + G + Y + +LN C + L G +
Sbjct: 73 PLNVDLVALCEEGNLDQVLELMGQ-----GAVADYRVYLALLNLCEHTRSLESGKRVHEI 127
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + N LI + +CG + +A F ++N +W +I ++G +
Sbjct: 128 LRRSAFRGDVELSNRLIGMYCKCGSVKNARRVFDQMLDRNMATWHLMIGGYTSNGLGCDG 187
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L +F+ + + TF L A + V E + F SM+E Y I PS EHY ++
Sbjct: 188 LLVFQQMKQAELPPDGETFELVLAACSQAEAVEEGFLHFESMKE-YGIVPSMEHYLEVIN 246
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYV 251
+G AG +E EFI+ VP +L W +L +R+HGD+ L A + L DP +
Sbjct: 247 IMGNAGQLKEAEEFIEN-VPIELGVEAWESLRKFARIHGDLDLEDCAEELLTRFDPSKAI 305
Query: 252 G--------------CWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSL- 296
+E +N+ E+ + E ++KL + M+E G+V +
Sbjct: 306 ADKLPTPPRKKQSDVNMLEEKNRATEYRYSIPYKEEDNEKLGGLSGQMREAGYVPDTRYV 365
Query: 297 --------------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIER 342
Y ++ A+A GLIS P R+IK++ +CG H+A + MS I+ R
Sbjct: 366 LHDIDEEEKEKALQYHSERLAIAYGLISTPPRTTLRIIKNLRICGDCHNAIKIMSKIVGR 425
Query: 343 ELVVKDPGSFHHFKDGKCSCKD 364
EL+V+D FHHFKDGKCSC D
Sbjct: 426 ELIVRDNKRFHHFKDGKCSCGD 447
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 184/411 (44%), Gaps = 60/411 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF---IDSYSICDILNSCLNPILLNVGTQA 68
I W+ ++ + +Y+ L +Q G + +++ +L++C L G
Sbjct: 158 ISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWV 217
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST-PEKNSLSWTFIISARVNHGH 127
AY+ K G+ +G LI++ ++CG I+ A F + PEK+ ++W+ +I+A HG
Sbjct: 218 HAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGL 277
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
E L+LF N TF + L A GLV E F M Y + P +HY
Sbjct: 278 SEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYG 337
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
MV+ RAG E+ +K + P + +IW LL +R+HGD++ + A+ KLLELDP
Sbjct: 338 CMVDLYSRAGRIEDAWNVVKSM-PMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDP 396
Query: 248 G---MYV---------GCW-----------------------IEIQNKIYEFVSNEELTS 272
YV G W +E+ I EF + +
Sbjct: 397 ANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHP 456
Query: 273 EVSDKLAEIEENMKEL---GFVLNR----------------SLYQTKMKAVALGLISFPH 313
E+ + ++E MK L G+ N SL+ K+ A+A +
Sbjct: 457 ELLNLYVMLDEIMKRLEKHGYERNTGEVLLDLDEEGKEFALSLHSEKL-AIAYCFLRTSP 515
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G R++K++ +C H A + +S RE++V+D FHHFK+G CSCKD
Sbjct: 516 GTTIRIVKNLRICSDCHVAIKIISKEFNREIIVRDCNRFHHFKNGLCSCKD 566
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 78/193 (40%), Gaps = 13/193 (6%)
Query: 14 WNLLLKACIKAK----DYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQ 69
WN L++A +++ + L R++L D ++ +L S P + G Q
Sbjct: 27 WNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSINTP---HRGRQLH 83
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
A + GL + P V LIN+ S CG A AF + + SW II A G
Sbjct: 84 AQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMIH 143
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME--EVYHIEPSEEHYS 187
A LF + N ++ + Y G A LF S++ E + P+E S
Sbjct: 144 IARKLFD----QMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMS 199
Query: 188 IMVEALGRAGMFE 200
++ A R G +
Sbjct: 200 SVLSACARLGALQ 212
>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Brachypodium distachyon]
Length = 571
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 110/405 (27%), Positives = 185/405 (45%), Gaps = 60/405 (14%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN LL A + Y V L ++ D ++ ++++C + L+ G A AY
Sbjct: 171 WNSLLHAYLSQGLYTHVLRLFRQMVA----TDEVTLLAVVSACSHLGALDTGRWAHAYHA 226
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ + +G L+N+ RCG ++ A F +K+ +W+ +I+ +G P +AL
Sbjct: 227 RTCRNTTRNLGTALLNMYMRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNGLPRDALK 286
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF + + + T + L A + G+V E M YH++P+ EHY +V+ L
Sbjct: 287 LFAEMKNIGVDPDSITMTAVLSACSHAGMVDEGKMFLHCMPIEYHLQPTIEHYGCVVDLL 346
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGC 253
GRAG EE L I+ VP K +W LL++ R H ++ + + A ++L+LDP C
Sbjct: 347 GRAGQLEEALALIE-TVPFKADVALWGALLVACRAHKNVDMGQMAAMEILKLDPHHAGAC 405
Query: 254 ------------W-----------------------IEIQNKIYEFVSNEELTSEVSDKL 278
W +E+ +YEF+S + +
Sbjct: 406 VFLSNAYAAAGKWDLVQEVRSSMKEHRIYKPPGSSIVELDGVVYEFLSGDHSHPQSDRIY 465
Query: 279 AEIEE------------NMKELGFVLNR-------SLYQTKMKAVALGLISFPHGMPTRV 319
A ++E + KE+ F ++ S + K+ A+ALGLIS G R+
Sbjct: 466 AMLDEVCKTLSLKGHRPSTKEVAFDIDEEDKEVCISQHSEKL-ALALGLISTRRGAVIRI 524
Query: 320 IKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+K++ +C HS + +S + +R +VV+D FHHFK+G CSC D
Sbjct: 525 VKNLRICEDCHSVMKIVSEVYDRVIVVRDRNRFHHFKNGSCSCLD 569
>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Glycine max]
Length = 661
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 180/385 (46%), Gaps = 74/385 (19%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ +L++ L +G + Y+ K GL + V N L+++ ++C I +
Sbjct: 230 DGFTVVSLLSASAELGALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEX---- 285
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
E+N++SWT +I +G EAL+LF++ + + + TF L A + G++
Sbjct: 286 ----ERNAVSWTSLIVGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLD 341
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F M+E + I P EHY MV+ L RAG+ ++ E+I+ + P + + WRTLL
Sbjct: 342 EGFDYFRRMKEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNM-PVQPNAVTWRTLLG 400
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV--------GC-WIEIQ-------------- 258
+ +HG + L + A LL+L+P G YV C W ++Q
Sbjct: 401 ACTIHGHLGLGETARSHLLKLEPKHSGDYVLLSNLYTSECRWADVQLIRRSMLKDGVKKT 460
Query: 259 ---------NKIYEFVSN-----------------------EELTSEVSDKLAEIEENMK 286
N++YEF E ++ LA+IEE K
Sbjct: 461 SGYSLVELGNRVYEFTMGNRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEK 520
Query: 287 ELGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVV 346
E Y ++ A+A ++ G RV+K++ +C H A + M+ + +RE+V+
Sbjct: 521 EQALS-----YHSEKXAIAFMRLNTAPGTTIRVMKNLRVCADCHMAIKLMAKVYDREIVI 575
Query: 347 KDPGSFHHFKDGKCSCKD--AYGSQ 369
+D G FHHF+ G CSCKD YG+
Sbjct: 576 RDRGRFHHFRGGSCSCKDYWPYGNH 600
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 80/197 (40%), Gaps = 27/197 (13%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+++ +L + + + G + + G S V N L++I + CG + A F
Sbjct: 129 DTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVF 188
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ +++ ++ +I+ +G PSEAL LF++ + T S L A A +G +
Sbjct: 189 ELMRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALE 248
Query: 165 EAYR----------------------LFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV 202
R L+ + ++ E + ++ ++ L G EE
Sbjct: 249 LGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEXERNAVSWTSLIVGLAVNGFGEEA 308
Query: 203 LEFIK-----GIVPGKL 214
LE + G+VP ++
Sbjct: 309 LELFREMEGQGLVPSEI 325
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 116/417 (27%), Positives = 191/417 (45%), Gaps = 71/417 (17%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQ-----LCCGFIDSY-SICDILNSCLNPILLNVG 65
+ WNL++ YE+ + ++ ++ L G S+ ++ +L++ +L G
Sbjct: 272 VTWNLMIAG------YELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKG 325
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+YM K G +G LI + ++CG I+ A F++ +K WT II H
Sbjct: 326 RWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIH 385
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
G + AL LF + N F L A GLV + + F M Y IEP+ EH
Sbjct: 386 GMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEH 445
Query: 186 YSIMVEALGRAGMFEEVLEFIKG--IVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
Y +V+ L RAG EE I+ I P K+ IW +LL SR HG + + +YA +++
Sbjct: 446 YGCLVDILCRAGHLEEAKNTIENMPISPNKV---IWMSLLGGSRNHGKIDIGEYAAQRVI 502
Query: 244 ELDP---GMYV---------GCW-----------------------IEIQNKIYEFVSNE 268
E+ P G Y+ G W +E + ++EF+ +
Sbjct: 503 EVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGD 562
Query: 269 ---ELTSEVSDKLAEIEENMKELGFVLNRSLY----------------QTKMKAVALGLI 309
T E+ K++E++E +K +G V + + ++ A+A GLI
Sbjct: 563 ISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLI 622
Query: 310 SFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ G+P R++K++ +C HS + +S I RE++V+D FHHFK+G CSC D +
Sbjct: 623 NVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 84/204 (41%), Gaps = 30/204 (14%)
Query: 12 IPWNLLLKACIKAKD--------YEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLN 63
I WN ++K ++ + +E+VHE L D++++ ++ C ++
Sbjct: 79 IHWNTIIKCYVENQFSHDGIVLFHELVHEYLP---------DNFTLPCVIKGCARLGVVQ 129
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G Q K G S V L+N+ S+CG+ID A F +K+ + W +I
Sbjct: 130 EGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYA 189
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
G AL LF++ R + ++ + + G V A +LF M P
Sbjct: 190 RCGEIDIALQLFEEMPER----DAFSWTVLVDGLSKCGKVESARKLFDQM-------PCR 238
Query: 184 E--HYSIMVEALGRAGMFEEVLEF 205
++ M+ ++G F+ LE
Sbjct: 239 NLVSWNAMINGYMKSGDFDSALEL 262
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 87 LININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN 146
L++ S+CGK++ A F P +N +SW +I+ + G AL+LF ++ +
Sbjct: 215 LVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELF----YQMPIWD 270
Query: 147 PTTFRSALKAYALMGLVGEAYRLFLSM 173
T+ + Y L G +A ++F M
Sbjct: 271 LVTWNLMIAGYELNGQFMDAVKMFFMM 297
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 171/359 (47%), Gaps = 55/359 (15%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
++ G Y+ K + + + L+++ ++CG ++ A F + K+ W+ +I A
Sbjct: 423 IDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGA 482
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
+G ALDLF Y N TF + L A GLV E +LF ME +Y I P
Sbjct: 483 LAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVP 542
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
+HY +V+ GRAG+ E+ FI+ + P +W LL + HG+++LA+ A
Sbjct: 543 QIQHYVCVVDIFGRAGLLEKAASFIEKM-PIPPTAAVWGALLGACSRHGNVELAELAYQN 601
Query: 242 LLELDP---GMYV---------GCW-----------------------IEIQNKIYEFV- 265
LLEL+P G +V G W I++ ++EF+
Sbjct: 602 LLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLV 661
Query: 266 --SNEELTSEVSDKLAEIEENMKELGF---------------VLNRSL-YQTKMKAVALG 307
++ + ++ KL EI E K +G+ ++ +SL ++ A+A G
Sbjct: 662 GDNSHPFSQKIYSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHSEKLAIAFG 721
Query: 308 LISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
LIS P R++K++ +CG H+ + +S + +R+++++D FHHF+ GKCSC D +
Sbjct: 722 LISTASSQPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ +L++C I L G +Y+ G H + N ++++ +CG I+DA F
Sbjct: 276 TMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKM 335
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
EK+ +SWT ++ G+ EA +F ++T+ + + + AY G A
Sbjct: 336 SEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTA----AWNALISAYEQNGKPRVAL 391
Query: 168 RLFLSMEEVYHIEPSE 183
LF M+ +P E
Sbjct: 392 SLFHEMQLSKDAKPDE 407
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 1/146 (0%)
Query: 14 WNLLLKACIKAKD-YEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN L++ + D + L + C F + ++ + + +L++G+ +
Sbjct: 140 WNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMV 199
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K L S + N LIN G D A F + P K+ +SW +I+A G P +AL
Sbjct: 200 IKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKAL 259
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYA 158
LF++ + + N T S L A A
Sbjct: 260 LLFQEMEMKDVKPNVITMVSVLSACA 285
>gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group]
gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group]
Length = 601
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 176/368 (47%), Gaps = 57/368 (15%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L +C + L+ G + Y G V N LI + ++CG +D A F TP+K+
Sbjct: 234 LLQACTSLGALDFGEKVWEYAVDHGYGGELKVRNSLITMYTKCGCVDKAYQVFCETPKKS 293
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
++W+ +IS ++G +A+ F++ + + TF L A + GLV E ++ F
Sbjct: 294 VVTWSAMISGLASNGFGKDAISAFEEMGRSGVAPDEQTFTGVLSACSHSGLVDEGFKFFD 353
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVH 229
M Y ++P+ HY MV+ +GRAG+ ++ E + + ++ P IWRTLL + R+H
Sbjct: 354 IMCYEYQLKPNVHHYGCMVDLMGRAGLLDQAYELV--VKDMRVAPDATIWRTLLGACRIH 411
Query: 230 GDMKLAKYALDKLLEL---DPGMYV-------------------------------GC-W 254
G + L + ++ L+EL G YV GC
Sbjct: 412 GHIDLGERVINHLIELKAQQAGDYVLLLNTYAAVEDWGKVAEVRKLMKEKGIQTTPGCTT 471
Query: 255 IEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS---------------L 296
+E+ +I+EF++ + +E+ +KL EI ++++ G+V N S
Sbjct: 472 VELNGEIHEFIAADASHPRKAEIYEKLDEINKHLRIAGYVPNVSSELHDLDSEGKECALA 531
Query: 297 YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFK 356
Y ++ A+A L+ P P R+ K++ +C H+ + S + R ++V+D FHHFK
Sbjct: 532 YHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKVFSGVYHRLVIVRDRTRFHHFK 591
Query: 357 DGKCSCKD 364
+ +CSC D
Sbjct: 592 EFQCSCND 599
>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 615
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/407 (26%), Positives = 186/407 (45%), Gaps = 56/407 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N ++ A +++ L +Q + S ++ +L++C L +G Y
Sbjct: 209 VSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEY 268
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K L S V LI++ +CG ++DA F+ ++ +W+ +I A NH + EA
Sbjct: 269 VRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREA 328
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF++ + + + TF L A + GLV E + F SM E + + P +HY + +
Sbjct: 329 ISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMRE-FGLVPGIKHYGCVAD 387
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
L R+G + EFI + P K ++WRTLL + GD L K +++LELD G
Sbjct: 388 LLARSGQLDRAYEFIDEL-PIKPTAILWRTLLSACGSRGDADLGKQVFERILELDDSHGG 446
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNEELTSEVSD 276
YV G W IE+ N+++EF + + + D
Sbjct: 447 DYVIFSNLCANTGRWEEMNRVRKLMNEKGVVKVPGCSSIEVDNRVHEFFAGDGRHPKSLD 506
Query: 277 KLAEIE---ENMKELGFVLNRS----------------LYQTKMKAVALGLISFPHGMPT 317
++ E +K G+V N S Y ++ A++ GL++ G
Sbjct: 507 ARRMVDGVIEQLKLAGYVPNTSHVFHVEMGEEEKAVSLRYHSEKLAISFGLLNTSPGTTL 566
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
RV+K++ +C HS + +S + R ++++D FHHF+DG CSC D
Sbjct: 567 RVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGD 613
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 1/165 (0%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+Y+ +L +C G QA K G H V LIN+ + CG A F
Sbjct: 141 DTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMF 200
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ +S+ +I+A V P EAL LF++ Q + + T S L A AL+G +
Sbjct: 201 GRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGAL- 259
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI 209
E R ++ + + +++ G+ G E+ + +G+
Sbjct: 260 ELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGM 304
>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
Length = 1073
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 191/405 (47%), Gaps = 52/405 (12%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L A + + +L +++QL DS + LN+C + G + A
Sbjct: 671 VCWNAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNACARLTAVEHGKKIHAQ 730
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G+ + V N LI + SRCG + A F+ ++ SW +I+ +G + A
Sbjct: 731 LKEAGMETDTRVSNSLIEMYSRCGCLCSAKQVFEKMLSRDINSWNALIAGYCQNGQGNIA 790
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+ ++ N TF S L +YA +G +A+ S+++ +++EPSE+HY+ MV
Sbjct: 791 LEYYELMLRASIVPNKATFTSILSSYAQLGEEEQAFDFLESIKKEWNMEPSEQHYAYMVA 850
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL------ 245
ALGRAG+ +E EFI+ I + L+W +LL++ R+H +++LA+ A++ LL+
Sbjct: 851 ALGRAGLLKEAEEFIEEI-SAESAALMWESLLVACRIHLNVELAETAVEHLLDAKAQASP 909
Query: 246 ---------------------------DPGMYV--GCWIEIQNKIYEFVSNEELTSE--V 274
+ G+ C IE+ ++ + F++N L+ + V
Sbjct: 910 AVCEQLMSIYAAAGRWEDVSVLKTTMQEAGLVALKSCTIEVNSEFHNFIAN-HLSPQIGV 968
Query: 275 SDKLAEIEENMKELGFVLNRSLYQTKMK-------------AVALGLISFPHGMPTRVIK 321
K+ E+ M + GF L+ + AVA GL G+ R +
Sbjct: 969 QCKIEELVRKMTDRGFSLDPQYASNDSREKECLFFQCPELLAVAYGLEHTASGVSIRCVT 1028
Query: 322 SVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ SH +F+S +R ++V+DP FH F+DG CSC D +
Sbjct: 1029 DSRVTDPSHEMLKFISRAYDRGILVRDPNCFHIFEDGICSCGDYW 1073
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Query: 12 IPWNLLLKA-CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ + +D E +L ++Q + + IL++C +PI L G Q +
Sbjct: 167 VSWNAMISGYALHGRDQEAA-DLFYQMQREGLKPNQNTFISILSACQSPIALEFGEQIHS 225
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K G S V LIN+ +CG ++ A F E+N +SWT +IS V HG E
Sbjct: 226 RIAKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSRE 285
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
AL LF+ N +F S L A +GE +L
Sbjct: 286 ALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEGLKL 324
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN + C + + + ++++ D + +LNSC +P L G
Sbjct: 469 ISWNAFISCCCRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGK 528
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G++S+ V N LI++ RCG + DA F ++ SW +I+A V HG A
Sbjct: 529 INQWGMLSNNHVANALISMYGRCGNLADAREVFYRIRRRDLGSWNAMIAANVQHGANGSA 588
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
DLF+ + + TF + L+A A
Sbjct: 589 FDLFRKYRSEGGKGDKYTFINVLRAVA 615
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 82/184 (44%), Gaps = 1/184 (0%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ A ++ +L + + G D Y+ ++L + N L+ G +
Sbjct: 572 WNAMIAANVQHGANGSAFDLFRKYRSEGGKGDKYTFINVLRAVANLEDLDAGRMIHGLVE 631
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G V LI + S+CG + DA+ F + EK+ + W +++A + +AL
Sbjct: 632 KGGFGKDIRVLTTLIKMYSKCGSLRDAENVFSTVQEKDVVCWNAMLAAYAHSDRGQDALK 691
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF+ Q + + +T+ +AL A A + V ++ ++E +E + ++E
Sbjct: 692 LFQQMQLEGVNPDSSTYSTALNACARLTAVEHGKKIHAQLKEA-GMETDTRVSNSLIEMY 750
Query: 194 GRAG 197
R G
Sbjct: 751 SRCG 754
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%)
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
L C+ L G + +M + N LI++ S+CG I+DA+ F++ +K+
Sbjct: 107 LQQCVLAKSLAEGKKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIEDANNVFQAMEDKDV 166
Query: 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+SW +IS HG EA DLF Q N TF S L A
Sbjct: 167 VSWNAMISGYALHGRDQEAADLFYQMQREGLKPNQNTFISILSA 210
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 1/143 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ ++ D L ++ + S IL +C NP L G + AY
Sbjct: 268 VSWTAMISGYVQHGDSREALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEGLKLHAY 327
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + GL VGN LI++ SRCG + +A F + N +W +I A G EA
Sbjct: 328 IKQAGLEQEVLVGNALISMYSRCGSLANARQVFDNLRSLNRTTWNAMI-AGYGEGLMEEA 386
Query: 132 LDLFKDKQWRYTSMNPTTFRSAL 154
LF+ + + + T+ S L
Sbjct: 387 FRLFRAMEQKGFQPDKFTYASLL 409
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L C + L+ G + + + G + V LI++ ++CG ++A F
Sbjct: 401 DKFTYASLLAICADRADLDRGKELHSQIASTGWQTDLTVATALISMYAKCGSPEEARKVF 460
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP 147
PE+N +SW IS H EA F KQ R +NP
Sbjct: 461 NQMPERNVISWNAFISCCCRHDLGKEAFQAF--KQMRRDDVNP 501
>gi|242056975|ref|XP_002457633.1| hypothetical protein SORBIDRAFT_03g010835 [Sorghum bicolor]
gi|241929608|gb|EES02753.1| hypothetical protein SORBIDRAFT_03g010835 [Sorghum bicolor]
Length = 396
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 172/346 (49%), Gaps = 35/346 (10%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + ++ +C NP L+ + + + V N L+ + ++CG + A F
Sbjct: 58 DPPAFYELAAACSNPKLIEELRKVHDFFLRSPFRGDLRVNNKLLEMYTKCGAMPHARRTF 117
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGL 162
+ P+++ SW ++ +G EAL +F + + PT T+ L A A
Sbjct: 118 DNMPDRDMDSWHIMMDGYSMNGLGDEALRMF---ELMKECLAPTSHTYVLVLNACANSEA 174
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
+ EA+ F +M + IEP EHY ++E LG++G E LE+I+ + P + ++W ++
Sbjct: 175 IEEAFLYFDAMSRDHGIEPGVEHYVGIIEVLGKSGHLNEALEYIEKL-PFEPNAMVWESV 233
Query: 223 LLSSRVHGDMKLAKYALDKLLELDPG-------------MYVGC-WIEIQNKIYEF---- 264
L +R++GD+ L A + L+ LDP +G ++ +N++ E+
Sbjct: 234 LNLARMNGDIDLEDRAEELLVSLDPSKANPKKLSTLPPKRRMGINMLDGRNRLVEYRLPP 293
Query: 265 ------VSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPHGMPTR 318
V+ + + L +I++ KE LY ++ A+A GLIS P P R
Sbjct: 294 KIERKVVNEQRYVPDTRYVLHDIDQEAKEQAL-----LYHSERLAIAYGLISTPARTPLR 348
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+IK++ +CG H+A + MS I+ REL+V+D FHHFKDGKCSC D
Sbjct: 349 IIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGD 394
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 176/359 (49%), Gaps = 57/359 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++I +L++C L +G + YM K GL + N L+++ +RCG++++A F
Sbjct: 221 DGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP--TTFRSALKAYALMGL 162
+KNS+SWT +I +G EA++LFK + + P TF L A + G+
Sbjct: 281 DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYME-STEGLLPCEITFVGILYACSHCGM 339
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V E + F M E Y IEP EH+ MV+ L RAG ++ E+IK + P + +IWRTL
Sbjct: 340 VKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSM-PMQPNVVIWRTL 398
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW---------------- 254
L + VHGD LA++A ++L+L+P G YV W
Sbjct: 399 LGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVK 458
Query: 255 -------IEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVL------------ 292
+E+ N+++EF+ ++ + + KL E+ ++ G+V
Sbjct: 459 KVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEE 518
Query: 293 ---NRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
N +Y ++ A+A LIS P P V+K++ +C H A + +S + RE+VV+D
Sbjct: 519 EKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRD 577
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 102/232 (43%), Gaps = 11/232 (4%)
Query: 6 LISDVEIP-----WNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLN 58
+ S +E P WN L++ + + L +++ G + D+++ ++ +
Sbjct: 75 VFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVS-GLVEPDTHTYPFLIKAVTT 133
Query: 59 PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFI 118
+ +G + + + G S V N L+++ + CG + A F PEK+ ++W +
Sbjct: 134 MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 193
Query: 119 ISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYH 178
I+ +G P EAL L+ + + + T S L A A +G + R+ + M +V
Sbjct: 194 INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV-G 252
Query: 179 IEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
+ + +++++ R G EE +V + W +L++ V+G
Sbjct: 253 LTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKN--SVSWTSLIVGLAVNG 302
>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 840
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 185/408 (45%), Gaps = 89/408 (21%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W L+ + +E +L ++ +D + + + ++C ++ G Q A
Sbjct: 404 ISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHAN 463
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K S + N LI + ++CG ++DA F S +N +SWT II
Sbjct: 464 FIKSSAGSLLSAENSLITMYAKCGCLEDAIRVFDSMETRNVISWTAIIVG---------- 513
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
YA GLV F SME+VY I+P+ +HY+ M++
Sbjct: 514 -------------------------YAQNGLVETGQSYFESMEKVYGIKPASDHYACMID 548
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM-- 249
LGRAG E E + + + IW++LL + RVHG+++L + A L++L+P
Sbjct: 549 LLGRAGKINEA-EHLLNRMDVEPDATIWKSLLSACRVHGNLELGERAGKNLIKLEPSNSL 607
Query: 250 -YV--------------------------------GCWIEIQNKIYEFVSNEE---LTSE 273
YV WIE++++++ F+S + L +E
Sbjct: 608 PYVLLSNMFSVAGRWEDAAHIRRAMKTMGINKEPGYSWIEMKSQVHTFISEDRSHPLAAE 667
Query: 274 VSDKLAEIEENMKELGFVLN--------------RSL-YQTKMKAVALGLISFPHGMPTR 318
+ K+ E+ +KE G V + RSL Y ++ AVA GL++ G P R
Sbjct: 668 IYSKIDEMMILIKEAGHVPDMNFALRDMDEEAKERSLAYHSEKLAVAFGLLTVAKGAPIR 727
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +CG HSA +++S+I +R ++++D FHHF +GKCSC D +
Sbjct: 728 IFKNLRVCGDCHSAMKYISSIFKRHIILRDLNCFHHFIEGKCSCGDFW 775
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y++ +L +C LL+ G Y K L ++ V L+++ S+C + +A+ F S
Sbjct: 135 YTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFS 194
Query: 107 TPE-KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
P+ KN + WT +++ +G +A+ FK+ + + N TF S L A
Sbjct: 195 LPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTA 245
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ IL +C + G Q + G + V + L+++ ++CG + A +
Sbjct: 235 NHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMIL 294
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+ + + W +I V HG+ EAL LF R ++ T+ S LK+ A
Sbjct: 295 DTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLA 348
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N L++ S+ G++D+A F P ++ +W +ISA N G+ EA LF + +
Sbjct: 41 NQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIK--- 97
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSM 173
N T+ S + Y G E R F M
Sbjct: 98 -NSITWSSLVSGYCKNGCEVEGLRQFSQM 125
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 120/439 (27%), Positives = 191/439 (43%), Gaps = 85/439 (19%)
Query: 12 IPWNLLLKACIKAKD----YEMVHELLER-IQLCCGFIDSYSICD--------------- 51
I WN+++ +K D Y++ E+ ER ++ I Y+ C
Sbjct: 180 ITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDA 239
Query: 52 -----------ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDA 100
+L +C + L +G + + + G + V N LI++ +CG ++DA
Sbjct: 240 GLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDA 299
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
F + E+ +SW+ +I+ HG +AL LF N TF L A + M
Sbjct: 300 CRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHM 359
Query: 161 GLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWR 220
G+V + + F SM Y I P EHY MV+ RAG+ +E EFI + P ++W
Sbjct: 360 GMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNM-PIAPNGVVWG 418
Query: 221 TLLLSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW-------------- 254
LL +VH ++KLA+ A L +LDP G YV G W
Sbjct: 419 ALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRG 478
Query: 255 ---------IEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVLNRSLYQTKMK 302
I ++ +Y FV+ ++ T E+ ++ + MK G+V N S+ M+
Sbjct: 479 VKKTPGWSSIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDME 538
Query: 303 ---------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
AV GLI G R++K++ +C H+A + +S + RE+VV+
Sbjct: 539 EDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVR 598
Query: 348 DPGSFHHFKDGKCSCKDAY 366
D FH FK+G CSC D +
Sbjct: 599 DRNRFHCFKNGSCSCGDYW 617
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 4/162 (2%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN L++ + L R++ D Y+ +L +C + + G Y+
Sbjct: 81 WNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVE 140
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K GL S+ + N ++++ + CG+I A F P+++ ++W +I+ V G A
Sbjct: 141 KLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYK 200
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175
LF + R N ++ S + YA G EA LFL ME+
Sbjct: 201 LFAEMPER----NVRSWTSMIGGYAQCGKSKEAIDLFLEMED 238
>gi|294464140|gb|ADE77588.1| unknown [Picea sitchensis]
Length = 312
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 147/312 (47%), Gaps = 58/312 (18%)
Query: 110 KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
KN +SW +I HGH +AL LF Q R N TF S L A + GLV E ++
Sbjct: 4 KNVVSWNAMIVGYGMHGHGEDALVLFTQMQQRGVKPNEITFISVLSACSHAGLVDEGWKC 63
Query: 170 FLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKG--IVPGKLCPLIWRTLLLSSR 227
+ M Y I P+ EHY+ MV+ LGRAG E +FI+ I PG +W L S R
Sbjct: 64 YNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAWDFIEKMPIEPG---ASVWGAFLGSCR 120
Query: 228 VHGDMKLAKYALDKLLELDP---GMYV---------GCW--------------------- 254
+H +++L + + LL LDP G YV G W
Sbjct: 121 IHCNIELGERVAELLLNLDPDNAGYYVLLSNIYAAAGRWDDVAKVRKMMKEKDVKKSPGC 180
Query: 255 --IEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVL---------------NR 294
IE+ NK++ FV + T + L + M+ +G+V N
Sbjct: 181 SLIEVNNKLHSFVVGDISHPQTEAIYAMLETLARQMEAVGYVPCTDFVLHDVEEEIKENM 240
Query: 295 SLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHH 354
++ A+A GLIS G R+ K++ +CG HSA +F+S I++RE++++D FHH
Sbjct: 241 LFAHSEKLAIAFGLISTRSGTSIRITKNLRVCGDCHSATKFISKIVKREIIMRDLNRFHH 300
Query: 355 FKDGKCSCKDAY 366
FKDG CSC D +
Sbjct: 301 FKDGLCSCGDYW 312
>gi|3377941|emb|CAA17526.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1331
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 176/359 (49%), Gaps = 57/359 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++I +L++C L +G + YM K GL + N L+++ +RCG++++A F
Sbjct: 4 DGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 63
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP--TTFRSALKAYALMGL 162
+KNS+SWT +I +G EA++LFK + + P TF L A + G+
Sbjct: 64 DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYME-STEGLLPCEITFVGILYACSHCGM 122
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V E + F M E Y IEP EH+ MV+ L RAG ++ E+IK + P + +IWRTL
Sbjct: 123 VKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSM-PMQPNVVIWRTL 181
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW---------------- 254
L + VHGD LA++A ++L+L+P G YV W
Sbjct: 182 LGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVK 241
Query: 255 -------IEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVL------------ 292
+E+ N+++EF+ ++ + + KL E+ ++ G+V
Sbjct: 242 KVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEE 301
Query: 293 ---NRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
N +Y ++ A+A LIS P P V+K++ +C H A + +S + RE+VV+D
Sbjct: 302 EKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRD 360
>gi|297602164|ref|NP_001052155.2| Os04g0174800 [Oryza sativa Japonica Group]
gi|255675179|dbj|BAF14069.2| Os04g0174800 [Oryza sativa Japonica Group]
Length = 299
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 97/306 (31%), Positives = 159/306 (51%), Gaps = 33/306 (10%)
Query: 87 LININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN 146
++ + ++C ++ A F P++N SW +I +G AL LF++ + +Y +
Sbjct: 1 MLEMYAKCAAMNHARRTFDHMPDRNMDSWHIMIDGYAVNGLGDVALQLFEEMKTKY-GIA 59
Query: 147 PT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
PT TF L A A + EA+ F +M + IEP EHY ++E LG++G E +E
Sbjct: 60 PTAHTFTLVLNACANSEAIEEAFLYFDAMSRDHGIEPGVEHYVGIIEVLGKSGHLNEAVE 119
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG-------------MYV 251
+I+ + P + +W +LL +R++GD+ L A + L+ LDP +
Sbjct: 120 YIEKL-PFEPTDTVWESLLNLARMNGDIDLEDRAEELLVSLDPTKVNPKKLPTPPPKRRL 178
Query: 252 GC-WIEIQNKIYEF----------VSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTK 300
G ++ +NK+ E+ V+ + + L +I++ KE LY ++
Sbjct: 179 GINMLDGRNKLVEYRLPPKIEKKVVNEQRYVPDTRYVLHDIDQEAKEQAL-----LYHSE 233
Query: 301 MKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKC 360
A+A GLIS P P R+IK++ +CG H+A + MS I+ REL+V+D FHHFKDGKC
Sbjct: 234 RLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKC 293
Query: 361 SCKDAY 366
SC D +
Sbjct: 294 SCGDYW 299
>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
Length = 533
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/340 (30%), Positives = 165/340 (48%), Gaps = 59/340 (17%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTP--EKNSLSWTFIISARVNHGHPSEALDLFKDKQW 140
+ N L+++ ++CG ++ A F P E+N+ SW +IS HGH EAL+LF Q
Sbjct: 197 LSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQE 256
Query: 141 RYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
N TF S L A + GL+ E + F M+ + + ++H++ +V+ LGRAG+ +
Sbjct: 257 EGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRL-SVTLEDKHHACVVDMLGRAGLLQ 315
Query: 201 EVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMYV------ 251
E + IK + P +W LLL+ ++HG+M+L K A LL+L+P G YV
Sbjct: 316 EAFDLIKEM-PSPPSDGVWGALLLACKIHGNMELGKTAASNLLQLEPNHTGYYVLMSNIY 374
Query: 252 ---GCWIEIQNKIYEFVSNEELTS---------------------------EVSDKLAEI 281
W E+ K+ + + N+ L EV K+ +
Sbjct: 375 AASNKWKEVW-KLRQDMKNKGLKKPAAFSMIEYGKDILGFHTADQENPYRHEVYKKMESL 433
Query: 282 EENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTRVIKSVGMC 326
MK G+V + S Y ++ AVA G++ GM RV K++ +C
Sbjct: 434 AIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKLAVAFGVLKIDPGMVIRVTKNLRVC 493
Query: 327 GYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
HSA +++S I +R+++V+D FHHF+ G CSCKD +
Sbjct: 494 NDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 102/236 (43%), Gaps = 6/236 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQA 70
+ W ++ A +A+ E L +++Q G + DS ++ + ++ +
Sbjct: 24 VCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIAVVSVASAVGQLGDVKNAHTVHG 83
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y ++ LI VGN ++ ++++CG + A L F E++ +SW ++S +G +E
Sbjct: 84 YAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLSGYTQNGQATE 143
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGL--VGEAYRLFLSMEEVYHIEPSEEHYSI 188
AL LF + + P T + A A +G +G + F+ +E +
Sbjct: 144 ALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSR---MEIDTNLSNA 200
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+++ + G E+ ++ GI P + W L+ +HG K A ++ E
Sbjct: 201 LMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQE 256
>gi|413941673|gb|AFW74322.1| hypothetical protein ZEAMMB73_642674 [Zea mays]
Length = 1028
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 118/435 (27%), Positives = 192/435 (44%), Gaps = 86/435 (19%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYS----ICDILNSCLNPILLNVGTQ 67
I WN+++ I+ D E EL + ++ C D+ S I +++ + L + Q
Sbjct: 442 ITWNIMISGYIRNGDDERAFELFQMMESCGVKRDTASWNALIAGSVHNGHSDRALRIFWQ 501
Query: 68 AQAYMTKRGLISH----PA---------------------------VGNCLININSRCGK 96
Q+ + + I+ PA + N LIN S+ G
Sbjct: 502 MQSLLVRPDFITILSIIPAFANLAGFWKVREIHACIYHNNLEMDGKIANALINAYSKSGD 561
Query: 97 IDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ A F +N +SW II A + HG PSEALD F + + + TT + +KA
Sbjct: 562 LAGACAVFDRHSSRNIISWNCIILAHLLHGSPSEALDRFCEMKQEGVRPDHTTLTAVIKA 621
Query: 157 YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP 216
Y L G V EA R+F +M Y+I P +HY+ +V+ LGR+G +E EFI G +P
Sbjct: 622 YGLQGKVSEAKRIFHNMTHDYNIIPDLDHYTAIVDLLGRSGSLQEAYEFI-GNMPLIPNL 680
Query: 217 LIWRTLLLSSRVHGDMKLAKYALDKLLELDPG-------------------------MYV 251
+W LL ++ +HG+ +LA +L LDP +Y
Sbjct: 681 AVWEALLTAATIHGNARLANLTARELSSLDPSDPRIQRLVFNYWGLTGKSVDVPLMTVYN 740
Query: 252 G---------CWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMK 302
G C +EI+N +Y F + + L E + +AE++ M ++ L +T +
Sbjct: 741 GGRELEDVDSCSVEIKNNVYLFSTGDNLALEST--VAELKLIMIQIRMSLLNISNETNAE 798
Query: 303 --------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
A+A + + P R+IK++ MC + H + +S ER++++KD
Sbjct: 799 EEKEELSGIHCEKLAIAFAISNSPPFRSIRIIKTLRMCSHCHIFAKLVSEKYERQILIKD 858
Query: 349 PGSFHHFKDGKCSCK 363
H F+DGKCSC+
Sbjct: 859 SNCLHKFEDGKCSCE 873
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 85/198 (42%), Gaps = 35/198 (17%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQ-------------LCCGFI-------------- 44
+ WN L+ + ++ + ++ E+LE+++ L GF+
Sbjct: 271 VTWNTLVSSYARSGELDVAMEMLEQMEESGVAPDVVTWTSLVSGFVHGDRGGEALWCFAR 330
Query: 45 --------DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGK 96
+ +I +++C + LL+ G + + K G +++ GN L+++ ++CG+
Sbjct: 331 MRLAGVEPNGMTIASAISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGE 390
Query: 97 IDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
I A F PEK+ SW +++ G+ +A +LF + + N T+ +
Sbjct: 391 IIAAKRVFDEIPEKDIFSWNSMVAGYAQAGYCGKAYELFCEMESLGVRRNVITWNIMISG 450
Query: 157 YALMGLVGEAYRLFLSME 174
Y G A+ LF ME
Sbjct: 451 YIRNGDDERAFELFQMME 468
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 4/135 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA----VGNCLININSRCGKIDDA 100
D + I IL +C L +GT + +RG ++ A VGN ++ + +CG++ A
Sbjct: 164 DRFLITRILQACAYTEDLELGTAMHSLAIRRGFMAEGARDVPVGNSVLAMYVKCGELGRA 223
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
AF +++ +W +I EA L D + + T T+ + + +YA
Sbjct: 224 RAAFDMMGQRDLCTWNSMIFGCCRSNEWEEARRLLDDMRRQGTEPGLVTWNTLVSSYARS 283
Query: 161 GLVGEAYRLFLSMEE 175
G + A + MEE
Sbjct: 284 GELDVAMEMLEQMEE 298
>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
Length = 539
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/372 (27%), Positives = 179/372 (48%), Gaps = 59/372 (15%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLIS-HPAVGNCLININSRCGKIDDADLAFK 105
++I L +C L +G Q AY+ + S V NCLI++ ++ G ID A F
Sbjct: 167 FTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFD 226
Query: 106 STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165
+ +KN +SWT +++ HG EAL++F + + + T L A + G++ +
Sbjct: 227 NLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQ 286
Query: 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLL 223
F SM + + + P +EHY+ MV+ LGRAG E +E I+G+ ++ P ++W LL
Sbjct: 287 GIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGM---QMEPSSIVWVALL 343
Query: 224 LSSRVHGDMKLAKYALDKLLELDP---GMYV----------------------------- 251
R+H +++L ++A +LLEL+ G Y
Sbjct: 344 SGCRIHANVELGEHAAKQLLELNSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRK 403
Query: 252 --GC-WIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVLNRS---------- 295
GC W++ + F ++ + ++ + L + + +K LG+V S
Sbjct: 404 RPGCSWVQGKKGTTTFYVADKTHPQSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEE 463
Query: 296 ----LYQTKMK-AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
L++ K A+A G++ G P R+ K++ +CG H+A ++S II+ E++++D
Sbjct: 464 KVDLLFEHSEKLALAYGILISAPGAPIRITKNLRVCGDCHNAITYISMIIDHEIILRDSS 523
Query: 351 SFHHFKDGKCSC 362
FHHFK G CSC
Sbjct: 524 RFHHFKKGSCSC 535
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D S+ ++L +C + G + G VGN L+++ ++CG +D+A F
Sbjct: 12 DVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVF 71
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
EK+ +SW +++ G +AL LF+ + +N ++ + + A+A GL
Sbjct: 72 DRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGC 131
Query: 165 EAYRLFLSME 174
E +F M+
Sbjct: 132 ETLDVFREMQ 141
>gi|242034187|ref|XP_002464488.1| hypothetical protein SORBIDRAFT_01g019317 [Sorghum bicolor]
gi|241918342|gb|EER91486.1| hypothetical protein SORBIDRAFT_01g019317 [Sorghum bicolor]
Length = 701
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 114/406 (28%), Positives = 193/406 (47%), Gaps = 52/406 (12%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ A + E+ +LL + + ++ L SC + L G + +Y
Sbjct: 297 VTWNSLMAAYKHNRMPEVTLKLLGEMFQSNLHPNLVTVHIALMSCGVTMALGYGRELHSY 356
Query: 72 MTKRGLISHPA-VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+TK +P + + LIN+ +CG I+DA L FKST K+ W ++S + H P +
Sbjct: 357 ITKCWPGGYPTTLASALINMYGKCGNIEDARLVFKSTVPKDIAVWNAMMSCYLLHRMPMD 416
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
+DLF + + TF L A GL EA F +ME+VY I+PS +HY+ MV
Sbjct: 417 IIDLFNYLEQSGIQPDHITFILLLSACKQEGLFEEAQSYFYNMEDVYGIKPSLKHYTCMV 476
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ +G AG+ E L I+ + P K +W T+L + ++H ++++ + A L EL+P
Sbjct: 477 DIMGSAGLLAESLTLIQKM-PLKPDACLWSTVLKACKLHSNLEIGEKAAKALFELEPHNP 535
Query: 248 -----------------------------GMYVG---CWIEIQNKIYEF----VSNEELT 271
G++V W+ ++ F +S+ +
Sbjct: 536 SNYMVLSNIYADTGLLDASEAVRDAMTEQGLHVDRQCSWLYNGTTVHSFEAGNLSHPAID 595
Query: 272 SEVSD------KLAEIEENMKELGFVLN-----RSLYQTKMKAVALGLISFPHGMPTRVI 320
+ +S ++ + + +++G N S + T+ AV GLIS P R+
Sbjct: 596 AILSTWKHLTVRMEQSRYSTEDIGPYYNVEVDPLSCHHTEKIAVCYGLISTYDHQPIRIS 655
Query: 321 KSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
K+ MC HS+ +F+S + RE++V D ++HHFKDG CSC+DA+
Sbjct: 656 KNFRMCMECHSSIKFISRDMNREIIVSDGCTYHHFKDGTCSCRDAW 701
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 96/195 (49%), Gaps = 4/195 (2%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLC-CGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN ++ C++ Y+ E +++C D+ ++ IL +C L +G Q +Y+
Sbjct: 13 WNCIISGCVQNALYDEALEFF--LEMCESERPDAVTVASILPACAGLQALGIGKQLHSYV 70
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
+ G+ + VG LI + S CG+ DDA + F + EKN W ++ + + G +A
Sbjct: 71 LRCGIKINVYVGASLIALYSECGEFDDARVVFSTIQEKNVNVWNELVQSYIREGSMDKAW 130
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA 192
+ F Q + T+ S + AYA +G +AY LF M +V ++P+ + ++
Sbjct: 131 EAFDLMQEDGLEPDIVTYNSFIAAYAKVGQNEQAYELFSRMADV-GLKPNVVSMNALICG 189
Query: 193 LGRAGMFEEVLEFIK 207
L R G++ + LE +
Sbjct: 190 LHRHGLYTDALEAFR 204
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/182 (19%), Positives = 73/182 (40%), Gaps = 2/182 (1%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
+I +L+ + L +G + Y K GL S+ + + L+++ + G + A F+
Sbjct: 232 TITGVLSLLADLKLDRLGKEVHCYALKNGLASNIYISSKLVDLYGKIGDMTSAANVFQKI 291
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
KN ++W +++A ++ P L L + N T AL + + +G
Sbjct: 292 GNKNVVTWNSLMAAYKHNRMPEVTLKLLGEMFQSNLHPNLVTVHIALMSCGVTMALGYGR 351
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
L + + + S ++ G+ G E+ K VP + +W ++
Sbjct: 352 ELHSYITKCWPGGYPTTLASALINMYGKCGNIEDARLVFKSTVPKDIA--VWNAMMSCYL 409
Query: 228 VH 229
+H
Sbjct: 410 LH 411
>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
Length = 1083
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 108/367 (29%), Positives = 167/367 (45%), Gaps = 54/367 (14%)
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
L + N +L G Q + K G S V N +++ +CG++ D ++
Sbjct: 718 LAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSR 777
Query: 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS 172
LSW +ISA HG +A + F + + TF S L A GLV E + S
Sbjct: 778 LSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDS 837
Query: 173 MEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDM 232
M + + P EH +++ LGR+G FIK + P L WR+LL + R+HG++
Sbjct: 838 MTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEM-PVPPNDLAWRSLLAACRIHGNL 896
Query: 233 KLAKYALDKLLELDP---GMYV-------------------------------GC-WIEI 257
+LA+ + LLELDP YV C W+++
Sbjct: 897 ELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKL 956
Query: 258 QNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVLNRSLYQTKMK------------ 302
++K++ F E+ S +S KL E+ + KE G+V + S M
Sbjct: 957 KDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHS 1016
Query: 303 ---AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGK 359
A+A GLI+ P R+ K++ +CG HS +F+S I+ R++V++DP FHHF GK
Sbjct: 1017 ERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGK 1076
Query: 360 CSCKDAY 366
CSC D +
Sbjct: 1077 CSCGDYW 1083
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 12/180 (6%)
Query: 82 AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH--GHPSEALDLFKDKQ 139
+GN LI++ ++ G+I+DA AF EKN +SWT +IS H GH + A +F + +
Sbjct: 276 TMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMR 335
Query: 140 WRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMF 199
R N ++ + L Y +GL EA LF M + +EP+ + ++ A R+G
Sbjct: 336 HR----NEASWSTMLSGYVRVGLYEEAVGLFCQMWGL-GVEPNGFMVASLITACSRSGYM 390
Query: 200 EEVLEFIKGIV--PGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGCWIEI 257
+ + G V G L + T L+ +G + L Y KL E P V W +
Sbjct: 391 ADEGFQVHGFVVKTGILGDVYVGTALV--HFYGSIGLV-YNAQKLFEEMPDHNVVSWTSL 447
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI------DSYSICDILNSC-LNPILLN 63
E W+ +L ++ YE E + L C + + + ++ +C + + +
Sbjct: 339 EASWSTMLSGYVRVGLYE------EAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMAD 392
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G Q ++ K G++ VG L++ G + +A F+ P+ N +SWT ++
Sbjct: 393 EGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYS 452
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
+ G+P E L++++ + S N TF + + L+
Sbjct: 453 DSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLL 489
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 48/225 (21%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G + K GL S+ + N L+ + S G+ +DA+L F++ E++ +SW +++
Sbjct: 593 LKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMAC 652
Query: 122 RVNHG----------------------------------HPSEALDLFKDKQWRYTSMNP 147
V G P+EA+ +K + + N
Sbjct: 653 YVQDGKCLDGLKILAELLQMGKPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANY 712
Query: 148 TTFRSALKAYALMGLVGEAYRLF-----LSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV 202
T S L A A + ++ E +L L E H+ + ++ G+ G +V
Sbjct: 713 ITMVS-LAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAA------MDMYGKCGEMHDV 765
Query: 203 LEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
L+ + P L W L+ + HG + A+ ++L+L P
Sbjct: 766 LKMLP--QPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGP 808
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
+G Q ++ + G +V N LI++ S +++A F E + +SW +ISA
Sbjct: 494 LGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYA 553
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTT 149
+HG E+L F + + N TT
Sbjct: 554 HHGLCRESLRCFHWMRHLHNETNSTT 579
>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
Length = 496
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 156/319 (48%), Gaps = 17/319 (5%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ +L++C + L+ G Y+ + + VG L+++ ++CGKI A F +
Sbjct: 195 TVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAM 254
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
K+ L+W II+ GH EA LFK+ + N TF + L A + G+V E
Sbjct: 255 ESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQ 314
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
+L M Y IEP EHY +++ L RAG+ EE +E I G +P + P LL R
Sbjct: 315 KLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELI-GTMPMEPNPCALGALLGGCR 373
Query: 228 VHGDMKLAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKE 287
+HG+ +L + +L+ L P C + S +++ + L ++EE KE
Sbjct: 374 IHGNFELGEMVGKRLINLQP-----C------QSGRLKSAIGXSADTGNXLLDMEEEDKE 422
Query: 288 LGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
+ ++ A+A GL+ R++K++ +C H + +S + E++V+
Sbjct: 423 HALAV-----HSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGGEIIVR 477
Query: 348 DPGSFHHFKDGKCSCKDAY 366
D FHHF+DG+CSC D +
Sbjct: 478 DRNRFHHFEDGECSCLDFW 496
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 106/249 (42%), Gaps = 22/249 (8%)
Query: 2 KLCSLISDVE-IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
+L +L SD + + WN ++ +K EM H + ++ C + S+ N+ +N
Sbjct: 55 QLFNLCSDRDLVSWNAMIDGYVKRG--EMGHARMVFDRMVCRDVISW------NTMINGY 106
Query: 61 LLNVGTQAQAY-----MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSW 115
+ VG +A M +R L+S N ++ +CG ++DA F P ++ +SW
Sbjct: 107 AI-VGKIDEAKRLFDEMPERNLVSX----NSMLXGFVKCGNVEDAFGLFSEMPCRDVVSW 161
Query: 116 TFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175
+++ G P+EAL LF + T S L A A +G + + L + +
Sbjct: 162 NSMLACYAQCGKPNEALALFDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYIND 221
Query: 176 VYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLA 235
IE + + +V+ + G + + + L W T++ + G +K A
Sbjct: 222 -NRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDV--LAWNTIIAGMAILGHVKEA 278
Query: 236 KYALDKLLE 244
+ ++ E
Sbjct: 279 QQLFKEMKE 287
>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Vitis vinifera]
Length = 632
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/423 (26%), Positives = 197/423 (46%), Gaps = 72/423 (17%)
Query: 11 EIPWNLL----LKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
E+ W ++ L + + + + +V E++ +++ ++ ++C IL +C L +G
Sbjct: 215 EVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYV---TLCSILTACSQSGDLMMGR 271
Query: 67 QAQAYMTKRGLIS-HPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
AY K + VG ++++ ++CG+I A FK P++N +SW ++S H
Sbjct: 272 WVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMH 331
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
G ALD+F + ++ + TF S L A + GLV + F ++E VY I P EH
Sbjct: 332 GLGRAALDIFP-QMFKEAKPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEH 390
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
Y+ MV+ LGRAG EE E + +P + ++ +LL S +HG ++L ++ L +L++L
Sbjct: 391 YACMVDLLGRAGRLEEA-EILVREMPIRPNEVVLGSLLGSCSIHGKLQLGEHLLQELVQL 449
Query: 246 DP----------GMYVGCW-------------------------IEIQNKIYEFVSNEE- 269
DP MY I + ++++F + ++
Sbjct: 450 DPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIHVGGQVHQFSAGDKS 509
Query: 270 --LTSEVSDKLAEIEENMKELGFVLNRSLY------------------------QTKMKA 303
T EV + L E+ ++ G+ N +L ++ A
Sbjct: 510 HPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLVEQEEKEQALFSHSEKLA 569
Query: 304 VALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCK 363
+ GLIS G+P + K++ +C HSA + +S I RE+V++D FH FK+G CSC
Sbjct: 570 ICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVIRDRNRFHCFKEGSCSCC 629
Query: 364 DAY 366
D +
Sbjct: 630 DYW 632
>gi|359496160|ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33760-like [Vitis vinifera]
Length = 561
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 109/406 (26%), Positives = 175/406 (43%), Gaps = 83/406 (20%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + + L R++ DS + +L++C L++G Y
Sbjct: 184 IAWNSMISGYDQNGFSKEAVGLFYRMRELGVEFDSATFVSVLSACSQSGALDLGCWVHDY 243
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + +G LIN+ +RCG + A F E+N ++WT +IS HG+ EA
Sbjct: 244 IVNNSFDVNVVLGTSLINMYTRCGNVSKAREVFDEMNERNVVAWTAMISGYGMHGYGREA 303
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
++LF+ LM + G M + Y + P EH+ MV+
Sbjct: 304 IELFR----------------------LMRIHG--------MRQDYGLVPRVEHHVCMVD 333
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
LGRAG E ++IK + G+ P +W +L + ++H ++ L + LL +P
Sbjct: 334 MLGRAGFLNEAFQYIKDLKQGEQAPALWTAMLGACKMHKNLDLGVQVAEHLLAAEPENPS 393
Query: 248 ------GMY------------------------VG-CWIEIQNKIYEFVSNEEL---TSE 273
+Y VG IE+ K Y F + T+E
Sbjct: 394 HYVLLSNVYALAGRMERVEMVRNMMIRKGLKKQVGYSIIEVGQKSYLFSMGDRSHPETTE 453
Query: 274 VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
+ L E+ KE G+V L Y ++ A+A GL+ HGM R
Sbjct: 454 IYKYLDELMLRSKEAGYVPAPELVMHELEEEEREYALRYHSEKLAIAFGLMKTSHGMTIR 513
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
++K++ MC HSA +F+S I RE++V+D FHHFK+G CSC+D
Sbjct: 514 IVKNLRMCEDCHSAIKFISNIANREIIVRDKLRFHHFKNGLCSCQD 559
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 117/411 (28%), Positives = 186/411 (45%), Gaps = 63/411 (15%)
Query: 12 IPWNLLLKACIKAKD----YEMVHELLER-IQLCCGFIDSYSICD--------------- 51
I WN+++ +K D Y++ E+ ER ++ I Y+ C
Sbjct: 180 ITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDA 239
Query: 52 -----------ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDA 100
+L +C + L +G + + + G + V N LI++ +CG ++DA
Sbjct: 240 GLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDA 299
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
F + E+ +SW+ +I+ HG +AL LF N TF L A + M
Sbjct: 300 CRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHM 359
Query: 161 GLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWR 220
G+V + + F SM Y I P EHY MV+ RAG+ +E EFI + P ++W
Sbjct: 360 GMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNM-PIAPNGVVWG 418
Query: 221 TLLLSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCWIEIQN--------- 259
LL +VH ++KLA+ A L +LDP G YV G W ++
Sbjct: 419 ALLGGCKVHKNVKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRG 478
Query: 260 ---KIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMK-AVALGLISFPHGM 315
K+ + + + S L ++EE+ KE + LY+ K AV GLI G
Sbjct: 479 TWEKLLQRMKLKGYVPNTSVVLLDMEEDQKE------KFLYRHSEKLAVVFGLIKTTPGT 532
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C H+A + +S + RE+VV+D FH FK+G CSC D +
Sbjct: 533 VIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 583
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y+ +L +C + + G Y+ K GL S+ + N ++++ + CG+I A F
Sbjct: 112 DHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVF 171
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P+++ ++W +I+ V G A LF + R N ++ S + YA G
Sbjct: 172 DKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPER----NVRSWTSMIGGYAQCGKSK 227
Query: 165 EAYRLFLSMEE 175
EA LFL ME+
Sbjct: 228 EAIDLFLEMED 238
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/408 (26%), Positives = 182/408 (44%), Gaps = 57/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ ++A D + ++Q D + +L +C L G Y
Sbjct: 191 VSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGY 250
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + +G L+++ ++CG++ F+ +KN L+WT +I HG S++
Sbjct: 251 LKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDS 310
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF + + F AL A GLV + LF SM Y I+P EHY MV+
Sbjct: 311 LTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVD 370
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
L R G+ E + ++ + P K LIW L+ R H +++LA+Y + +EL+P G
Sbjct: 371 LLARNGLLSEARDMVEKM-PMKPDALIWGALMAGCRFHKNVELAEYVIKHWIELEPDKSG 429
Query: 249 MYV-------------------------------GCW-IEIQNKIYEFVSNEELTSEVSD 276
YV GC +EI+ I++F+ + + D
Sbjct: 430 AYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEIKGVIHQFIVGDLSHPRIKD 489
Query: 277 KLA---EIEENMK-ELGFVLNR----------------SLYQTKMKAVALGLISFPHGMP 316
L EI+ ++ E G+V ++ S + K+ A+A LIS MP
Sbjct: 490 ILTKWYEIDSRIRLEEGYVPDKKEVLLDIEEEEMESALSRHSEKL-AIAFALISTEDYMP 548
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
R++K++ +C H + +S + RE++V+D FH FKDG CSCKD
Sbjct: 549 IRIVKNLRVCQDCHHVTKLISKVYGREIIVRDRTRFHLFKDGTCSCKD 596
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 3/146 (2%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N LI ++R G++ DA F PE+N++SW+ +++ V G EAL +F Q +
Sbjct: 163 NTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVR 222
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
+ T L A A +G + E + + +I + + +V+ + G + +E
Sbjct: 223 PDDTVLVGVLAACAQLGAL-EQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGME 281
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHG 230
+G+ + L W T++ +HG
Sbjct: 282 VFEGMKDKNV--LAWTTMIKGLAMHG 305
>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/374 (27%), Positives = 175/374 (46%), Gaps = 58/374 (15%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
+ + +L++C N L+ G Y + + +G L+++ ++CG+ID A F+
Sbjct: 255 FVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEK 314
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
K SW +I HG +A+DLF + N TF L A A GLV +
Sbjct: 315 MSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEITFVGVLNACAHGGLVQKG 371
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226
+F SM + Y +EP EHY +V+ LGRAG+ E + + I P + P +W LL +
Sbjct: 372 LTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSI-PTEPTPAVWGALLGAC 430
Query: 227 RVHGDMKLAKYALDKLLELDP---GMYV---------GCWIEI----------------- 257
R HG+++L + LLEL+P G Y G W E+
Sbjct: 431 RKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPG 490
Query: 258 -------QNKIYEFVSNEELTSEVSD---KLAEIEENMKELGFVLNRS------------ 295
+ ++++F+ + +V D L +++E ++ G+ + S
Sbjct: 491 TSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKE 550
Query: 296 --LYQTKMK-AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
++Q K A+ GLI+ G R++K++ +C HSA + +S + RE++V+D +
Sbjct: 551 TAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRY 610
Query: 353 HHFKDGKCSCKDAY 366
HHF++G CSCKD +
Sbjct: 611 HHFRNGACSCKDFW 624
>gi|413941674|gb|AFW74323.1| hypothetical protein ZEAMMB73_642674 [Zea mays]
Length = 876
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 118/435 (27%), Positives = 192/435 (44%), Gaps = 86/435 (19%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYS----ICDILNSCLNPILLNVGTQ 67
I WN+++ I+ D E EL + ++ C D+ S I +++ + L + Q
Sbjct: 442 ITWNIMISGYIRNGDDERAFELFQMMESCGVKRDTASWNALIAGSVHNGHSDRALRIFWQ 501
Query: 68 AQAYMTKRGLISH----PA---------------------------VGNCLININSRCGK 96
Q+ + + I+ PA + N LIN S+ G
Sbjct: 502 MQSLLVRPDFITILSIIPAFANLAGFWKVREIHACIYHNNLEMDGKIANALINAYSKSGD 561
Query: 97 IDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ A F +N +SW II A + HG PSEALD F + + + TT + +KA
Sbjct: 562 LAGACAVFDRHSSRNIISWNCIILAHLLHGSPSEALDRFCEMKQEGVRPDHTTLTAVIKA 621
Query: 157 YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP 216
Y L G V EA R+F +M Y+I P +HY+ +V+ LGR+G +E EFI G +P
Sbjct: 622 YGLQGKVSEAKRIFHNMTHDYNIIPDLDHYTAIVDLLGRSGSLQEAYEFI-GNMPLIPNL 680
Query: 217 LIWRTLLLSSRVHGDMKLAKYALDKLLELDPG-------------------------MYV 251
+W LL ++ +HG+ +LA +L LDP +Y
Sbjct: 681 AVWEALLTAATIHGNARLANLTARELSSLDPSDPRIQRLVFNYWGLTGKSVDVPLMTVYN 740
Query: 252 G---------CWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMK 302
G C +EI+N +Y F + + L E + +AE++ M ++ L +T +
Sbjct: 741 GGRELEDVDSCSVEIKNNVYLFSTGDNLALEST--VAELKLIMIQIRMSLLNISNETNAE 798
Query: 303 --------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
A+A + + P R+IK++ MC + H + +S ER++++KD
Sbjct: 799 EEKEELSGIHCEKLAIAFAISNSPPFRSIRIIKTLRMCSHCHIFAKLVSEKYERQILIKD 858
Query: 349 PGSFHHFKDGKCSCK 363
H F+DGKCSC+
Sbjct: 859 SNCLHKFEDGKCSCE 873
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 85/198 (42%), Gaps = 35/198 (17%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQ-------------LCCGFI-------------- 44
+ WN L+ + ++ + ++ E+LE+++ L GF+
Sbjct: 271 VTWNTLVSSYARSGELDVAMEMLEQMEESGVAPDVVTWTSLVSGFVHGDRGGEALWCFAR 330
Query: 45 --------DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGK 96
+ +I +++C + LL+ G + + K G +++ GN L+++ ++CG+
Sbjct: 331 MRLAGVEPNGMTIASAISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGE 390
Query: 97 IDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
I A F PEK+ SW +++ G+ +A +LF + + N T+ +
Sbjct: 391 IIAAKRVFDEIPEKDIFSWNSMVAGYAQAGYCGKAYELFCEMESLGVRRNVITWNIMISG 450
Query: 157 YALMGLVGEAYRLFLSME 174
Y G A+ LF ME
Sbjct: 451 YIRNGDDERAFELFQMME 468
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 4/135 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA----VGNCLININSRCGKIDDA 100
D + I IL +C L +GT + +RG ++ A VGN ++ + +CG++ A
Sbjct: 164 DRFLITRILQACAYTEDLELGTAMHSLAIRRGFMAEGARDVPVGNSVLAMYVKCGELGRA 223
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
AF +++ +W +I EA L D + + T T+ + + +YA
Sbjct: 224 RAAFDMMGQRDLCTWNSMIFGCCRSNEWEEARRLLDDMRRQGTEPGLVTWNTLVSSYARS 283
Query: 161 GLVGEAYRLFLSMEE 175
G + A + MEE
Sbjct: 284 GELDVAMEMLEQMEE 298
>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 693
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 178/376 (47%), Gaps = 57/376 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DSY+I +++SC L G + G+ + V + L+++ +CG DA + F
Sbjct: 321 DSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIF 380
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++ P +N ++W +I +G EAL L++ Q + TF L A +V
Sbjct: 381 ETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFVGVLSACINADMVK 440
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F S+ E + I P+ +HY+ M+ LGR+G ++ ++ I+G+ P + IW T LL
Sbjct: 441 EGQKYFDSISE-HGIAPTLDHYACMITLLGRSGSVDKAVDLIQGM-PHEPNYRIWST-LL 497
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMYVGC--------------------- 253
S GD+K A+ A L ELDP +Y C
Sbjct: 498 SVCAKGDLKNAELAASHLFELDPRNAGPYIMLSNLYAACGRWKDVAVVRSLMKEKNAKKF 557
Query: 254 ----WIEIQNKIYEFVSNEELTSEVSDKLAEIEE---NMKELGF------VLN------- 293
W+E+ NK++ FVS + EV E+ ++++G+ VL+
Sbjct: 558 AAYSWVEVGNKVHRFVSEDHYHPEVGKIYGELNRLISILQQIGYNPDTNIVLHNVGEEEK 617
Query: 294 -RSL-YQTKMKAVALGLISFPHGM-PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
RS+ Y ++ A+A LI P+G+ P R+IK++ +C H +F S I R ++++D
Sbjct: 618 FRSISYHSEKLALAFALIRKPNGVAPIRIIKNIRVCDDCHVFMKFASITISRPIIMRDSN 677
Query: 351 SFHHFKDGKCSCKDAY 366
FHHF GKCSC D +
Sbjct: 678 RFHHFFGGKCSCNDNW 693
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%)
Query: 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK 105
YS + L +C + L G Q + L + V N + ++ ++CG ID A L F
Sbjct: 155 QYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFD 214
Query: 106 STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165
+KN +SW +IS V G+P+E + LF + Q + T + L AY G V +
Sbjct: 215 GMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDD 274
Query: 166 AYRLFLSM 173
A LF+ +
Sbjct: 275 ARNLFIKL 282
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 55/153 (35%), Gaps = 35/153 (22%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
+I + WNL++ +K + L +QL S L P L+ V
Sbjct: 216 MIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQL---------------SGLKPDLVTVS 260
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
AY RCG++DDA F P+K+ + WT +I +
Sbjct: 261 NVLNAYF--------------------RCGRVDDARNLFIKLPKKDEICWTTMIVGYAQN 300
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
G +A LF D R + T S + + A
Sbjct: 301 GREEDAWMLFGDMLRRNVKPDSYTISSMVSSCA 333
>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Glycine max]
Length = 975
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 180/372 (48%), Gaps = 54/372 (14%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ +L +C L +G + ++ K L V LI++ ++CG ++ + F
Sbjct: 605 AVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRV 664
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
EK+ W II+ HGH +A++LF+ Q + + TF L A GLV E
Sbjct: 665 NEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGL 724
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
+ M+ +Y ++P EHY+ +V+ LGRAG E L+ + + P + IW +LL S R
Sbjct: 725 KYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEM-PDEPDSGIWSSLLSSCR 783
Query: 228 VHGDMKLAKYALDKLLELDP--------------------------------GMY--VGC 253
+GD+++ + KLLEL+P G++ GC
Sbjct: 784 NYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGC 843
Query: 254 -WIEIQNKIYEFVSNEELTSE---VSDKLAEIEENMKELGF------VLNRSLYQTKMK- 302
WIEI +Y F+ ++ SE + ++E+ + ++G+ VL+ + K+K
Sbjct: 844 SWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEEGKIKI 903
Query: 303 --------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHH 354
A++ GL++ G RV K++ +C H+A + +S +++R+++V+D FHH
Sbjct: 904 LKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRDNKRFHH 963
Query: 355 FKDGKCSCKDAY 366
FK+G C+C D +
Sbjct: 964 FKNGLCTCGDFW 975
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ K D+ V ELL+ +Q ++ ++ ++L +C L +
Sbjct: 366 VSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHG 425
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y + G + V N + ++C +D A+ F K SW +I A +G P +
Sbjct: 426 YAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGK 485
Query: 131 ALDLF 135
+LDLF
Sbjct: 486 SLDLF 490
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D++++ + +C + +G A K G S VGN LI + +CG ++ A F
Sbjct: 194 DNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVF 253
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
++ +N +SW ++ A +G E +FK
Sbjct: 254 ETMRNRNLVSWNSVMYACSENGGFGECCGVFK 285
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCC--GFI-DSYSICDILNSCLNPILLNVGTQA 68
+ WN ++ AC + + + +R+ + G + D ++ ++ +C + +G
Sbjct: 262 VSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVV 321
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
K G+ V N L+++ S+CG + +A F KN +SW II G
Sbjct: 322 HGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDF 381
Query: 129 SEALDLFKDKQ 139
+L ++ Q
Sbjct: 382 RGVFELLQEMQ 392
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++I +L +C L G + +M + GL +G L+++ +C + L F
Sbjct: 501 DRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIF 560
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
K+ + W +I+ + P EALD F+
Sbjct: 561 DKMENKSLVCWNVMITGFSQNELPCEALDTFR 592
>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
Length = 640
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 158/343 (46%), Gaps = 64/343 (18%)
Query: 83 VGNCLININSRCGKIDDADLAFK--STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQW 140
VG LI++ +CG ++DA F +++ ++W +++ HGH EAL F Q
Sbjct: 299 VGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFG--QL 356
Query: 141 RYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGM 198
R + PT TF L A + GLV E LF SM E Y IEP EHY MV+ LGRAG
Sbjct: 357 RAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGR 416
Query: 199 FEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE---LDPGMYV---- 251
EE E ++ + K ++W +LL + R+H +M+L + D L+ + G YV
Sbjct: 417 VEEAFELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVANGLANSGTYVLLSN 476
Query: 252 -----GCW-----------------------IEIQNKIYEFVSNEE---LTSEVSDKLAE 280
G W +E+ ++ EFV+ + +E+ KL E
Sbjct: 477 MYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVGRRVVEFVAGDRSHPRAAEIYAKLEE 536
Query: 281 IEENMKELGFVLNR-------------------SLYQTKMKAVALGLISFPHGMPTRVIK 321
+ + G V +++ K+ A+A GLIS P G +++K
Sbjct: 537 VNGMARARGHVPRTELVLHDLDDDDTAAKEQALAVHSEKL-ALAFGLISTPPGTAIKIVK 595
Query: 322 SVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
++ C H+ + +S + R++V +D FHHF DG C+C D
Sbjct: 596 NLRACADCHAVLKLVSEVTGRKIVFRDRNRFHHFVDGSCTCGD 638
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 2/160 (1%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
++ ++ G +DDA F P K+ + W ++ HG PSEAL LF+
Sbjct: 197 TAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVE 256
Query: 145 MNPTTFRSALKAYALMGLV--GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV 202
+ + AL A A +G G F++ + + + +++ + G E+
Sbjct: 257 PDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDA 316
Query: 203 LEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
+ + G + W ++ +HG + A A +L
Sbjct: 317 VAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQL 356
>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
Length = 648
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/388 (27%), Positives = 184/388 (47%), Gaps = 60/388 (15%)
Query: 32 ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91
E+ +R+ ID S+ +++C L Q + G ++ VG+ L+++
Sbjct: 260 EVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMY 319
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY-TSMNPTTF 150
++CG ID+A F EKN +++ +I+ +HG SEA+ LFK+ R N TF
Sbjct: 320 AKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTF 379
Query: 151 RSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIV 210
L A + G+VGE F M++ Y I PS +HY+ MV+ LGRAG+ +E L+ ++ +
Sbjct: 380 IGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVRSM- 438
Query: 211 PGKLCPL--IWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCWIE 256
+ P +W LL + R+HG ++AK + L +L+P G YV G W E
Sbjct: 439 --SVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLEPESIGNYVLLSNILASAGKWEE 496
Query: 257 IQNK------------------------IYEFVSNEEL---TSEVSDKLAEIEENMKELG 289
+ +++F + + T E+ L E+ +K G
Sbjct: 497 VSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNAHPRTHEIKKALLELVAKLKLEG 556
Query: 290 FV--LNRSLY-------------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACR 334
+V L+ +Y ++ A++ GL++ G R+IK++ +C H +
Sbjct: 557 YVPILSSIVYDVNDEEKERLLMGHSEKLALSFGLLTLGSGCTIRIIKNLRICDDCHLFMQ 616
Query: 335 FMSTIIERELVVKDPGSFHHFKDGKCSC 362
+S + E++V+D FHHFK+G+CSC
Sbjct: 617 LVSRVESVEIIVRDNMRFHHFKNGECSC 644
>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/406 (27%), Positives = 184/406 (45%), Gaps = 54/406 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN+++ + L +++ C D+ +I +L +C + L +G + Y
Sbjct: 272 ISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKY 331
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K L + + N L+++ ++CG +++A F ++ +SWT ++SA G +A
Sbjct: 332 IEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDA 391
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF + + F S L A + GL+ + F M E Y I P EH++ MV+
Sbjct: 392 VALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVD 451
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
GRAG EE FIK + P + +W LL + RVH M + A D L +L P G
Sbjct: 452 LFGRAGEVEEAYSFIKQM-PMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSG 510
Query: 249 MYV---------GCWIEIQNKIYEF----------VSNEELTSEVSDKLAEIEEN----- 284
YV G W ++ N Y +SN EL +V LA + +
Sbjct: 511 YYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKN 570
Query: 285 -----------MKELGFV--LNRSLYQTKMK-------------AVALGLISFPHGMPTR 318
MKELG++ +L+ +++ A+ +++ G P R
Sbjct: 571 IYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIR 630
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+ K++ +CG H A + +S I+ R ++V+D FHHF +G CSC D
Sbjct: 631 ITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGD 676
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQAYM 72
+N+++++ + Y + + + L C F D Y+ +L +C L VG Q +
Sbjct: 105 FNVMIRSYVNNNLYVEALSIFQ-VMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAI 163
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K GL ++ +GN L+ + +CG + +A P ++ +SW +++ G +AL
Sbjct: 164 VKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDAL 223
Query: 133 DLFKD 137
++ K+
Sbjct: 224 EICKE 228
>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 185/408 (45%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN+++ + L +++ C D+ +I +L +C + L +G + Y
Sbjct: 272 ISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKY 331
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K L + + N L+++ ++CG +++A F ++ +SWT ++SA G +A
Sbjct: 332 IEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDA 391
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF + + F S L A + GL+ + F M E Y I P EH++ MV+
Sbjct: 392 VALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVD 451
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
GRAG EE FIK + P + +W LL + RVH M + A D L +L P G
Sbjct: 452 LFGRAGEVEEAYSFIKQM-PMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSG 510
Query: 249 MYV---------GCWIEIQNKIYEF----------VSNEELTSEVSDKLAEIEEN----- 284
YV G W ++ N Y +SN EL +V LA + +
Sbjct: 511 YYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKN 570
Query: 285 -----------MKELGFV--LNRSLYQTKMK-------------AVALGLISFPHGMPTR 318
MKELG++ +L+ +++ A+ +++ G P R
Sbjct: 571 IYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIR 630
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +CG H A + +S I+ R ++V+D FHHF +G CSC D +
Sbjct: 631 ITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQAYM 72
+N+++++ + Y + + + L C F D Y+ +L +C L VG Q +
Sbjct: 105 FNVMIRSYVNNNLYVEALSIFQ-VMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAI 163
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K GL ++ +GN L+ + +CG + +A P ++ +SW +++ G +AL
Sbjct: 164 VKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDAL 223
Query: 133 DLFKD 137
++ K+
Sbjct: 224 EICKE 228
>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 558
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/409 (26%), Positives = 197/409 (48%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQA 70
+ W+ ++ + + +L E++QL + D ++ ++++ + L +G +A
Sbjct: 151 VSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRA 210
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
++ + G A+G LI++ SRCG ID++ + F+ +N L+WT +I+ HG E
Sbjct: 211 FIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGRSME 270
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL +F + + TF L A + GLV E + +F S+ +VY ++P +HY MV
Sbjct: 271 ALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYGMDPLLDHYGCMV 330
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL-------- 242
+ LGRAG+ E +F++ + P K +IWRTLL + H ++ LA+ K+
Sbjct: 331 DILGRAGLLNEAYDFVERM-PMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKISSSQN 389
Query: 243 --LELDPGMY--VGCWIE-----------------------IQNKIYEFVSNEE---LTS 272
L L +Y G W+E + I+EFVS + +
Sbjct: 390 GDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQTIHEFVSGDNSHPQSE 449
Query: 273 EVSDKLAEIEENMKELGFVLN--------------RSL-YQTKMKAVALGLISFPHGMPT 317
+++ L+ I +++ G+++ SL Y ++ AVA ++S
Sbjct: 450 DITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSYHSEKLAVAFAILSMKDKRTI 509
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C HS + +S ER+++++D FHHF+ G CSC D +
Sbjct: 510 RIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFEKGLCSCHDYW 558
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D+++ +L +C L + + + K GL S V N LI + CG ++ A
Sbjct: 85 LDNFTFPFVLKACSR---LQINLHLHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAVKV 141
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
F E++S+SW+ +I++ +N+G+ SEALDLF+ Q
Sbjct: 142 FDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQ 177
>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/378 (27%), Positives = 185/378 (48%), Gaps = 58/378 (15%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+DS ++ IL+SC + L G + A K ++ VG+ +I++ + CG ++DA
Sbjct: 323 LDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRF 382
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP--TTFRSALKAYALMG 161
F EK+ + W +I+ +G+ ++A+DLF Q + + ++P +TF S L A + G
Sbjct: 383 FYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFL--QMKGSGLDPDESTFVSVLYACSHAG 440
Query: 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221
+V E ++F M + H+ P+ +HY+ +++ LGRAG + FI + P + ++ T
Sbjct: 441 MVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNM-PFQPDFDVYST 499
Query: 222 LLLSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW--------------- 254
LL + R+HG++KL K+ E++P G YV G W
Sbjct: 500 LLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRM 559
Query: 255 --------IEIQNKIYEFVSNEELTSE---VSDKLAEIEENMKELGFVLNRSL------- 296
IEI +IY F++ E+ + + L + +K+ G+V N ++
Sbjct: 560 KKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSD 619
Query: 297 --------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
+ ++ A+A GL+ R+ K++ C H+A +F+S + R LV+KD
Sbjct: 620 DMKKDILYHHSEKMAIAFGLMRTKPETIIRITKNLRTCDDCHTASKFVSKVFGRVLVIKD 679
Query: 349 PGSFHHFKDGKCSCKDAY 366
FH F+DG CSC+D +
Sbjct: 680 ANRFHVFQDGVCSCRDYW 697
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%)
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q A + GL + + N L+N CG + DA F TP KN +SWT +IS +
Sbjct: 42 QIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKND 101
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
EA+D+F++ N T S L A+A +GL+
Sbjct: 102 CFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLI 138
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 63/144 (43%), Gaps = 11/144 (7%)
Query: 4 CSLISDVE-----------IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDI 52
C L++D + + W +L+ K + ++ + + ++ +I +
Sbjct: 69 CGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSV 128
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
L + N L+ + + + G + V L+++ S+ G + A F+S E+N
Sbjct: 129 LPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNV 188
Query: 113 LSWTFIISARVNHGHPSEALDLFK 136
++W I+S +HG EA+DLF
Sbjct: 189 VTWNAIVSGYSDHGFSEEAIDLFN 212
>gi|302818918|ref|XP_002991131.1| hypothetical protein SELMODRAFT_132950 [Selaginella moellendorffii]
gi|300141062|gb|EFJ07777.1| hypothetical protein SELMODRAFT_132950 [Selaginella moellendorffii]
Length = 582
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/409 (25%), Positives = 180/409 (44%), Gaps = 58/409 (14%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ A + + EL +++ DS ++ L++C L+ G ++T
Sbjct: 176 WNAIISASFQNGQLKGSLELFWKMRRQGVRPDSLTLATALDTCAASGNLHEGRVVHGWIT 235
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+GL VGN L+++ +CG +++A F + EKN SW F++ A + G+ +EA+
Sbjct: 236 MKGLEQDVFVGNALVDMYGKCGSVEEAWAVFDNMKEKNWFSWNFMVEAYCSSGYSTEAIQ 295
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
+F N TF S L A G + E + M Y + P EHY+ V L
Sbjct: 296 VFLQMLQEGVKPNAKTFTSVLVACGHAGFIREGILHLVYMSSDYDVVPIAEHYACAVGLL 355
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP------ 247
GR+G +E E++K + P P +W L+ + R+HGD+ + A + LLE P
Sbjct: 356 GRSGWVKEAEEYVKKL-PDAEAP-VWDALVTACRIHGDLDRGRSAAESLLECSPHAARSY 413
Query: 248 ----GMY-------------------------VGCWIEIQNKI-YEFVSNEELTSEVSDK 277
G+Y V I + N +EF++ + +
Sbjct: 414 AVVAGLYNALARSDDAARVRETMTSKGLTEERVTSSILVGNTTCHEFITADTRHKRIQGI 473
Query: 278 LAEIE---ENMKELGFVLNRS----------------LYQTKMKAVALGLISFPHGMPTR 318
AE+E + + + G+ + S Y ++ AV LG I P R
Sbjct: 474 HAELEDLGQRIAKDGYAPDASKLLMHERAEEQRQESLFYHSERLAVGLGAIKIRGDCPLR 533
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGS-FHHFKDGKCSCKDAY 366
+I++ MC H+A +FMS + R ++++D S H F DG C+C+D +
Sbjct: 534 IIRNFRMCADCHTAIKFMSKAMGRTIILRDGSSQLHRFVDGHCACRDYW 582
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 5/185 (2%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
I+ C L G + + + G+ + ++ + CG +D+A F P K+
Sbjct: 8 IVRLCTRLKALVAGRRIHEQLVQMGIAEQLPLAKFIVQMYLSCGSLDEARNLFDLLPSKD 67
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
WT +I+A +G EA+ LF+ + R T T+ + +K++A + A RL
Sbjct: 68 VGMWTAVIAAYAKYGRWQEAIKLFETMESR-TGPAKATYFAVMKSFASAESLAGA-RLVH 125
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP---LIWRTLLLSSRV 228
S E + + ++E GR G EE V G P L+W ++ +S
Sbjct: 126 SRIVELGAENDDLVRAALIEMYGRCGSLEEAWSIFSSSVAGDGGPHSVLVWNAIISASFQ 185
Query: 229 HGDMK 233
+G +K
Sbjct: 186 NGQLK 190
>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 581
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/414 (26%), Positives = 189/414 (45%), Gaps = 65/414 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERI--QLCCGFIDSYSICDILNSCLNPILLNVGTQAQ 69
+ WN+++ + + +R+ + CG DSY++ +L+SC + LN+G
Sbjct: 174 VSWNVMICCFSHVGLHNQALSMYKRMGNEGVCG--DSYTLVALLSSCAHVSALNMGVMLH 231
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
S V N LI++ ++CG +++A F +++ L+W +I HGH
Sbjct: 232 RIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGV 291
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
EA+ F+ N TF L + GLV E F M +H+ P+ +HY M
Sbjct: 292 EAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCM 351
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLC---PLIWRTLLLSSRVHGDMKLAKYALDKLLEL- 245
V+ GRAG E LE I C P++WRTLL S ++H +++L + A+ KL++L
Sbjct: 352 VDLYGRAGQLENSLEMIY----ASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLE 407
Query: 246 --DPGMYV--------------------------------GCWIEIQNKIYEFVSNEELT 271
+ G YV WIEI +++++FV ++++
Sbjct: 408 AFNAGDYVLMTSIYSAANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMH 467
Query: 272 SE---VSDKLAEI-----------EENMKELGFVLNRSL-----YQTKMKAVALGLISFP 312
E + +L E+ E++ + + +R L ++ A+A GL+
Sbjct: 468 PESAVIYSELGEVINRAILAGYKPEDSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTT 527
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G R+ K++ +C HS +++S RE++V+D FHHF DG CSC D +
Sbjct: 528 AGTTLRITKNLRVCRDCHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/404 (25%), Positives = 186/404 (46%), Gaps = 69/404 (17%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A ++ E EL + ++ + ++ +L++C G +Y
Sbjct: 203 VSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSY 262
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN------- 124
+ + + + N ++++ ++CG ++DA F PEK+ +SWT ++
Sbjct: 263 IERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAA 322
Query: 125 -----HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179
HGH +A+ LF Q N TF + L A + +GLV E F ME VY +
Sbjct: 323 QGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGV 382
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239
P +HY+ MV+ LGRAG+ EE +E I+ + P +W LL + +H ++ LA+ A
Sbjct: 383 LPGVKHYACMVDILGRAGLLEEAVELIEKM-PMAPAASVWGALLGACTIHENVVLAEQAC 441
Query: 240 DKLLELDPGMY------------VGCW-----------------------IEIQNKIYEF 264
+L+EL+PG + G W IE+ ++EF
Sbjct: 442 SQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEF 501
Query: 265 V---SNEELTSEVSDKLAEIEENMKELGFVLNRS-----------------LYQTKMKAV 304
+ ++ ++ KL EI ++ +G+V N+S L+ K+ A+
Sbjct: 502 LVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKL-AI 560
Query: 305 ALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
A GLIS P R++K++ +CG HS + +S + +RE++++D
Sbjct: 561 AFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRD 604
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 14 WNLLLKACIKAKD-YEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN L++A + + ++ + L + F D ++ ++ + L G +
Sbjct: 103 WNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMV 162
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K L S + N LI+ ++CG++ F + P ++ +SW +I+A V G P EAL
Sbjct: 163 IKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEAL 222
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYA 158
+LF++ + + N T L A A
Sbjct: 223 ELFQEMETQNVKPNGITMVGVLSACA 248
>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 565
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 112/409 (27%), Positives = 189/409 (46%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ + E V L + +++ + + +L+SC + + G Q A
Sbjct: 158 VAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAE 217
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G S AV + LI++ S+CG + DA AF +++ + W+ +ISA HG EA
Sbjct: 218 AIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEA 277
Query: 132 LDLFKD-KQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
+ LF + +N F + L A + GL + LF M E Y +P +HY+ +V
Sbjct: 278 IKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVV 337
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG ++ IK + P K P+IW+TLL + +H + ++A+ ++LE+DP
Sbjct: 338 DLLGRAGCLDQAEAIIKSM-PIKPDPVIWKTLLSACNIHKNAEMAQKVFKEILEIDPNDS 396
Query: 248 GMYV--------------------------------GCWIEIQNKIYEFVSNEELTS--- 272
YV W E + ++++F + S
Sbjct: 397 ACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSK 456
Query: 273 EVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPT 317
E+ L E+ MK G+ + + + ++ AVA L+ P G P
Sbjct: 457 EIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPI 516
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+IK++ +C H A +++S I+ RE+ ++D FHHF +GKCSC D +
Sbjct: 517 RIIKNLRVCSDCHVAFKYISVIMNREITLRDGSRFHHFINGKCSCGDYW 565
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 68/156 (43%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ I+ + E L + D Y++ + + +++G Q Y
Sbjct: 59 WNAMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAI 118
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K GL V + L ++ R GK+ D ++ +S P +N ++W +I +G P L
Sbjct: 119 KYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLY 178
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
L+K + N TF + L + + + + G+ ++
Sbjct: 179 LYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQI 214
>gi|7799758|emb|CAA06829.1| DYW7 protein [Arabidopsis thaliana]
Length = 406
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 110/404 (27%), Positives = 182/404 (45%), Gaps = 52/404 (12%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WNL++ I+ + EL ++Q +S +I +L +C N + + + +
Sbjct: 4 WNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACANLLGAKMVREIHGCVL 63
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+R L + AV N L + ++ G I+ + F K+ ++W +I V HG AL
Sbjct: 64 RRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSLIGGYVLHGSYGPALA 123
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF + + + N T S + A+ LMG V E ++F S+ YHI P+ EH S MV
Sbjct: 124 LFNQMKTQGITPNRGTLSSIILAHGLMGNVDEGKKVFYSIANDYHIIPALEHCSAMVYLY 183
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP------ 247
GRA EE L+FI+ + P IW + L R+HGD+ +A +A + L L+P
Sbjct: 184 GRANRLEEALQFIQEMNIQSETP-IWESFLTGCRIHGDIDMAIHAAENLFSLEPENTATE 242
Query: 248 ---------GMYVG--------------------CWIEIQNKIYEFVSNEE--LTSEVSD 276
G +G WIE++N I+ F + ++ L ++V
Sbjct: 243 SIVSQIYALGAKLGRSLEGNKPRRDNLLKKPLGQSWIEVRNLIHTFTTGDQSKLCTDVLY 302
Query: 277 KLAEIEENMKELGFVLNRSLY------------QTKMKAVALGLISFPHGMPT--RVIKS 322
L E + N L+ ++ A+A GLIS T R++K+
Sbjct: 303 PLVEKMSRLDNRSDQYNGELWIEEEGREETCGIHSEKFAMAFGLISSSGASKTTIRILKN 362
Query: 323 VGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ MC H +++S +++++D HHFK+G CSCKD +
Sbjct: 363 LRMCRDCHDTAKYVSKRYGCDILLEDTRCLHHFKNGDCSCKDYW 406
>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 833
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 109/417 (26%), Positives = 190/417 (45%), Gaps = 75/417 (17%)
Query: 2 KLCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLC--CGFIDSYSICDILNSCLNP 59
++C DV + W +++ + D +L + C + ++I +L +C
Sbjct: 434 EICPKDRDV-VTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARL 492
Query: 60 ILLNVGTQAQAYMTKRGLISHPA--VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTF 117
L G Q AY+ +R I V NCLI++ S+ G +D A + F S ++N++SWT
Sbjct: 493 AALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTS 552
Query: 118 IISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVY 177
+++ HG +A +F + + ++ TF L A + G+ +
Sbjct: 553 LLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGM-------------DF 599
Query: 178 HIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKY 237
++P EHY+ MV+ LGRAG E + I + P + P++W LL + R+H + +LA++
Sbjct: 600 GVDPGVEHYACMVDLLGRAGRLGEAMRLINDM-PIEPTPVVWIALLSACRIHSNEELAEF 658
Query: 238 ALDKLLELD--------------------------------------PG----------- 248
A KLLEL PG
Sbjct: 659 AAKKLLELKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSWVKGRKGME 718
Query: 249 -MYVGCWIEIQN-KIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVAL 306
YVG +Q+ KIYE ++ +L + + + + +E G L+ ++ A+A
Sbjct: 719 TFYVGDRTHLQSQKIYETLA--DLIKRIKANFSLHDVDDEEKGDQLSE---HSEKLALAY 773
Query: 307 GLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCK 363
+++ P G P R+ K++ +CG HSA ++S I+E E++++D FH FK+G CSCK
Sbjct: 774 AILTLPPGAPIRITKNLRICGDFHSAITYISMIVEHEIILRDSSRFHQFKNGSCSCK 830
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 63/129 (48%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+ + +IL C L G Q + + GL+ VGN L+++ ++CGK++DA+ F
Sbjct: 230 DTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVF 289
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ K+ ++W +++ +G +AL LF + + T+ S + YA G
Sbjct: 290 ERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGC 349
Query: 165 EAYRLFLSM 173
EA +F M
Sbjct: 350 EAMDVFRQM 358
>gi|30686506|ref|NP_173402.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75263158|sp|Q9FXH1.1|PPR52_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g19720; AltName: Full=Protein DYW7
gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein [Arabidopsis thaliana]
gi|332191770|gb|AEE29891.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 894
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 110/404 (27%), Positives = 182/404 (45%), Gaps = 52/404 (12%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WNL++ I+ + EL ++Q +S +I +L +C N + + + +
Sbjct: 492 WNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACANLLGAKMVREIHGCVL 551
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+R L + AV N L + ++ G I+ + F K+ ++W +I V HG AL
Sbjct: 552 RRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSLIGGYVLHGSYGPALA 611
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF + + + N T S + A+ LMG V E ++F S+ YHI P+ EH S MV
Sbjct: 612 LFNQMKTQGITPNRGTLSSIILAHGLMGNVDEGKKVFYSIANDYHIIPALEHCSAMVYLY 671
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP------ 247
GRA EE L+FI+ + P IW + L R+HGD+ +A +A + L L+P
Sbjct: 672 GRANRLEEALQFIQEMNIQSETP-IWESFLTGCRIHGDIDMAIHAAENLFSLEPENTATE 730
Query: 248 ---------GMYVG--------------------CWIEIQNKIYEFVSNEE--LTSEVSD 276
G +G WIE++N I+ F + ++ L ++V
Sbjct: 731 SIVSQIYALGAKLGRSLEGNKPRRDNLLKKPLGQSWIEVRNLIHTFTTGDQSKLCTDVLY 790
Query: 277 KLAEIEENMKELGFVLNRSLY------------QTKMKAVALGLISFPHGMPT--RVIKS 322
L E + N L+ ++ A+A GLIS T R++K+
Sbjct: 791 PLVEKMSRLDNRSDQYNGELWIEEEGREETCGIHSEKFAMAFGLISSSGASKTTIRILKN 850
Query: 323 VGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ MC H +++S +++++D HHFK+G CSCKD +
Sbjct: 851 LRMCRDCHDTAKYVSKRYGCDILLEDTRCLHHFKNGDCSCKDYW 894
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 97/211 (45%), Gaps = 1/211 (0%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
+ +DV W ++ I ++ ++ L ++ +I +++C ++N G
Sbjct: 313 ITADV-FTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQG 371
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
++ + K G I VGN L+++ S+CGK++DA F S K+ +W +I+
Sbjct: 372 SEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQA 431
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
G+ +A +LF Q N T+ + + Y G GEA LF ME+ ++ +
Sbjct: 432 GYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDLFQRMEKDGKVQRNTAT 491
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCP 216
+++++ + G +E LE + + + P
Sbjct: 492 WNLIIAGYIQNGKKDEALELFRKMQFSRFMP 522
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 92/204 (45%), Gaps = 8/204 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYM 72
W+ ++ A + + V +L R+ + G + D + IL C N + G + +
Sbjct: 149 WSAMIGAYSRENRWREVAKLF-RLMMKDGVLPDDFLFPKILQGCANCGDVEAGKVIHSVV 207
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K G+ S V N ++ + ++CG++D A F+ E++ ++W ++ A +G EA+
Sbjct: 208 IKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEAV 267
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA 192
+L K+ + S T+ + Y +G A L M E + I ++ M+
Sbjct: 268 ELVKEMEKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKM-ETFGITADVFTWTAMISG 326
Query: 193 LGRAGMFEEVLE-----FIKGIVP 211
L GM + L+ F+ G+VP
Sbjct: 327 LIHNGMRYQALDMFRKMFLAGVVP 350
>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 750
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 102/373 (27%), Positives = 166/373 (44%), Gaps = 55/373 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
++S++ I +C N+G Q A KR LI + LI + S+CG +DDA
Sbjct: 383 LNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDAHEV 442
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F+S + ++WT IS +G+ SEAL LF+ N TF + L A + GLV
Sbjct: 443 FESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLV 502
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ +M Y++ P+ +HY M++ R+G+ +E L F+K + P + + W+ L
Sbjct: 503 EQGKHYLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALRFMKNM-PFEPDAMSWKCFL 561
Query: 224 LSSRVHGDMKLAKYALDKLLELDPGMYVG------------------------------- 252
H +++L K A ++L +LDP G
Sbjct: 562 SGCWTHKNLELGKIAGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEVMKLMNERMLKK 621
Query: 253 ----CWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMK------ 302
WI+ + KI+ F+ ++ + EI E +KE + ++Q M
Sbjct: 622 ELSCSWIQEKGKIHRFIVGDKHHPQSQ----EIYEKLKEFDGFMEGDMFQCSMTERREQL 677
Query: 303 -------AVALGLISFPHG--MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
A+A GLIS P +V K++ C H + +S + E+V++D FH
Sbjct: 678 LDHSERLAIAFGLISVNGNARAPIKVFKNLRACPDCHEFAKHVSLVTGHEIVIRDSRRFH 737
Query: 354 HFKDGKCSCKDAY 366
HFK+GKCSC D +
Sbjct: 738 HFKEGKCSCNDYW 750
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L S +NP L++G Q A++ + GL S+ ++ ++N+ +CG + A F K
Sbjct: 188 LLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKK 247
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
++WT ++ G +AL LF D + F LKA A
Sbjct: 248 PVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACA 294
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS+ +L +C + L G Q A + K GL +VG L++ +C + A AF
Sbjct: 282 DSFVFSVVLKACASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAF 341
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKD-KQWRYTSMNPTTFRSALKAYALMG 161
+ E N +SW+ IIS EA+ FK + +N T+ S +A +++
Sbjct: 342 QEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLA 399
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 78 ISHPAV--GNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
I +P+V NC++ + CG ++DAD F + N++S T +ISA G +A+ LF
Sbjct: 111 IENPSVLLQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLF 170
>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
Length = 744
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 184/376 (48%), Gaps = 54/376 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D++++ ++L +C + L G A + +R + + +G L+++ +CG++D+A +
Sbjct: 370 VDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIV 429
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F+ +++ +WT +I+ +G AL+ F + N ++ + L A + L+
Sbjct: 430 FQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLL 489
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E F M +Y+I P EHY M++ LGR+G+ +E ++ +K +P + +IW ++L
Sbjct: 490 NEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVK-TMPIQPNAVIWASIL 548
Query: 224 LSSRVHGDMKLAKYALDKLLELDP---GMYVGCW-IEIQNKIYEFVSNEELTSE------ 273
+ RVH + LA+ A + LL+L+P G+YV + I I ++ +E S + E
Sbjct: 549 SACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKK 608
Query: 274 -----------------VSDK-----------LAEIEENMKELGFVLNRS---------- 295
VSDK L EI +K LG+ S
Sbjct: 609 TAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEE 668
Query: 296 -----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
L ++ A+A GLI+ +P + K++ +C HSA + +S + RE++V+D
Sbjct: 669 KEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRS 728
Query: 351 SFHHFKDGKCSCKDAY 366
FHHF++G CSC D +
Sbjct: 729 RFHHFREGTCSCNDFW 744
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 5/132 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L++C L +G + ++G+ + + LI++ ++CG A F
Sbjct: 238 DEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVF 297
Query: 105 KSTPE-KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
+ SW II HGH A LF + + R + TF S + Y G +
Sbjct: 298 DALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVR----DIITFNSMMTGYIHSGQL 353
Query: 164 GEAYRLFLSMEE 175
EA LF+SM
Sbjct: 354 REALLLFMSMRR 365
>gi|297740028|emb|CBI30210.3| unnamed protein product [Vitis vinifera]
Length = 900
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 102/378 (26%), Positives = 167/378 (44%), Gaps = 56/378 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D + +L C +G Q + K G +S VGN +I + S+C +DDA
Sbjct: 524 VDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGVGNSIITMYSKCSNMDDAIKV 583
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM--G 161
F P + +SW +I+ + H EAL ++ + + TF + AY
Sbjct: 584 FNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWSKMEKAGIKPDTVTFVLIISAYRHTNSN 643
Query: 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221
LV RLFLSM+ +YHI+P+ EHY+ +V LG G+ EE E I + P + +WR
Sbjct: 644 LVDNCRRLFLSMKTIYHIDPTVEHYTSLVGVLGYWGLLEEAEEMINKM-PIEPEASVWRA 702
Query: 222 LLLSSRVHGDMKLAKYALDKLLE---LDPGMYV--------------------------- 251
LL + R+H + + K A LL LDP Y+
Sbjct: 703 LLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYILVSNLYSAYGRWHCSDMVREEMRVKGF 762
Query: 252 -----GCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKE---LGFVLNRS-------- 295
WI +NK++ F + ++ + D + +E + E G+V + S
Sbjct: 763 RKHPGRSWIIHENKVHSFYARDKSHPQAKDIHSGLELLIMECLKAGYVPDTSFVLHEVEE 822
Query: 296 -------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
Y + A GL+ G P R++K++ +CG H+ +++S + RE+ ++D
Sbjct: 823 HQKKDFLFYHSAKIAATYGLLMTRPGRPIRIVKNILLCGDCHTFLKYVSIVTGREIFLRD 882
Query: 349 PGSFHHFKDGKCSCKDAY 366
H F +G+CSCKD +
Sbjct: 883 ASGHHCFLNGQCSCKDYW 900
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 6/163 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN ++ + +K YE EL ++ GF ID +++ IL + + VG + A++
Sbjct: 258 WNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAA-RGLASMVGREIHAHV 316
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K G S+ +V N LI ++CG I F+ ++ ++WT +I+A + G AL
Sbjct: 317 IKIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLAL 376
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175
++F R N ++ + L + G +A F M E
Sbjct: 377 EVFDKMPAR----NSISYNAILSGFCQNGEGSKALAFFCRMVE 415
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 59/128 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ + ++ K+ E+ R++ ++ +S IL C+ + L +G Q A
Sbjct: 155 VSYTAMISGFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAI 214
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G +++ V N L+ + +CG +D F P ++ SW +IS+ V A
Sbjct: 215 VIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERA 274
Query: 132 LDLFKDKQ 139
+LF+D +
Sbjct: 275 FELFRDMR 282
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD-- 101
+ +++ +LN+C + + Q ++ K G S+ + L+++ +RCG++ DA
Sbjct: 420 LTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKM 479
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
+ S + S+ WT +I + P EA+ LF Q
Sbjct: 480 FSQGSFSQSGSIIWTSMICGYARNAQPEEAISLFCQSQ 517
>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 818
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 163/336 (48%), Gaps = 53/336 (15%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
V L+++ ++CG I A F E++ ++W +I HG E LDLF + Q
Sbjct: 484 VSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGA 543
Query: 143 TSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV 202
N TF S + A + G V E LF SM+E Y++EP+ +HYS MV+ LGRAG ++
Sbjct: 544 VKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDA 603
Query: 203 LEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMYV-------- 251
FI+ + P K + +L + ++H +++L + A KL +LDP G +V
Sbjct: 604 WNFIQEM-PIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYAS 662
Query: 252 -----------------------GC-WIEIQNKIYEFVS---NEELTSEVSDKLAEIEEN 284
GC W+E++N+I+ F S N + ++ L + +
Sbjct: 663 NSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDE 722
Query: 285 MKELGFV------------LNRSLYQTKMK--AVALGLISFPHGMPTRVIKSVGMCGYSH 330
+K G+V + + L + + A+A GL++ G + K++ +CG H
Sbjct: 723 IKAAGYVPDPDSIHDVEEDVKKQLLSSHSERLAIAFGLLNTSPGTTLHIRKNLRVCGDCH 782
Query: 331 SACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+++S + RE++V+D FHHFK+G CSC D +
Sbjct: 783 DTTKYISLVTGREIIVRDLRRFHHFKNGSCSCGDYW 818
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 96/244 (39%), Gaps = 41/244 (16%)
Query: 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQ 67
S + WN ++ C + + E ++ ++ +L +C N L G
Sbjct: 309 SKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWF 368
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
+ K L S+ +V N LI++ S+C ++D A F + EK +++W +I +G
Sbjct: 369 VHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNGC 427
Query: 128 PSEALDLF----------------------------KDKQWRY-----TSMNPTTFRSA- 153
EAL+LF + +W + M+ F S
Sbjct: 428 VKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTA 487
Query: 154 -LKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPG 212
+ YA G + A +LF M+E + I ++ M++ G G+ +E L+ + G
Sbjct: 488 LVDMYAKCGAIKTARKLFDMMQERHVIT-----WNAMIDGYGTHGVGKETLDLFNEMQKG 542
Query: 213 KLCP 216
+ P
Sbjct: 543 AVKP 546
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 51/124 (41%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ + + +L+ ++Q DS ++ IL + + L +G Y
Sbjct: 212 VSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGY 271
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G S V N L+++ +CG A L FK K +SW +I +G EA
Sbjct: 272 AFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEA 331
Query: 132 LDLF 135
F
Sbjct: 332 FATF 335
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L C + L G + + G S+ V ++++ ++C +ID+A F+ K+
Sbjct: 151 LLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKD 210
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
+SWT +++ +GH AL L Q + T S L A A M
Sbjct: 211 LVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADM 259
>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 572
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 105/392 (26%), Positives = 186/392 (47%), Gaps = 60/392 (15%)
Query: 33 LLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA--VGNCLINI 90
L ER+ C ++ ++ +L +C + L++G + A + + G+ H V L+++
Sbjct: 183 LFERMLQCGVEVNEATVISVLRACADSGALSMGRKVHANLEEWGIEIHSKSNVSTALVDM 242
Query: 91 NSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
++ G I A F ++ WT +IS +HG +A+D+F D + + T
Sbjct: 243 YAKGGCIASARKVFDDVVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTV 302
Query: 151 RSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIV 210
+ L A GL+ E + LF ++ Y ++PS +H+ +V+ L RAG +E +F+ +
Sbjct: 303 TAVLTACRNAGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAM- 361
Query: 211 PGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL------DPGMYV---------GCW- 254
P + ++WRTL+ + +VHGD A+ L K LE+ D G Y+ G W
Sbjct: 362 PIEPDTVLWRTLIWACKVHGDADRAE-RLMKHLEIQDMRADDSGSYILASNVYASTGKWC 420
Query: 255 ----------------------IEIQNKIYEFVS---NEELTSEVSDKLAEIEENMKELG 289
IE+ ++EFV N E+ +LAE+ + +++ G
Sbjct: 421 NKAEVRELMNKKGLVKPPGTSRIEVDGGVHEFVMGDYNHPEAEEIFVELAEVVDKIRKEG 480
Query: 290 FVLNRS---------------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACR 334
+ S L+ ++ A+A GLI HG R++K++ C H +
Sbjct: 481 YDPRVSEVLLEMDDEEKAVQLLHHSEKLALAYGLIRIGHGSTIRIVKNLRSCEDCHEFMK 540
Query: 335 FMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+S I +R+++V+D FHHFK+G+CSCKD +
Sbjct: 541 LISKIYKRDIIVRDRIRFHHFKNGECSCKDYW 572
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 6/203 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+++ +L C L +G Q A +TK G + N L+++ S G + A F
Sbjct: 94 DNFTFPFLLKCCSRSKLPPLGKQLHALLTKLGFAPDLYIQNVLLHMYSEFGDLLLARSLF 153
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P ++ +SWT +I VNH P EA++LF+ +N T S L+A A G +
Sbjct: 154 DRMPHRDVVSWTSMIGGLVNHDLPVEAINLFERMLQCGVEVNEATVISVLRACADSGALS 213
Query: 165 EAYRLFLSMEEV-YHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
++ ++EE I + +V+ + G + +V + +W ++
Sbjct: 214 MGRKVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIASARKVFDDVVHRDV--FVWTAMI 271
Query: 224 LSSRVHGDMKLAKYALDKLLELD 246
HG L K A+D ++++
Sbjct: 272 SGLASHG---LCKDAIDMFVDME 291
>gi|225441064|ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g03800-like [Vitis vinifera]
Length = 882
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 102/378 (26%), Positives = 167/378 (44%), Gaps = 56/378 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D + +L C +G Q + K G +S VGN +I + S+C +DDA
Sbjct: 506 VDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGVGNSIITMYSKCSNMDDAIKV 565
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM--G 161
F P + +SW +I+ + H EAL ++ + + TF + AY
Sbjct: 566 FNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWSKMEKAGIKPDTVTFVLIISAYRHTNSN 625
Query: 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221
LV RLFLSM+ +YHI+P+ EHY+ +V LG G+ EE E I + P + +WR
Sbjct: 626 LVDNCRRLFLSMKTIYHIDPTVEHYTSLVGVLGYWGLLEEAEEMINKM-PIEPEASVWRA 684
Query: 222 LLLSSRVHGDMKLAKYALDKLLE---LDPGMYV--------------------------- 251
LL + R+H + + K A LL LDP Y+
Sbjct: 685 LLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYILVSNLYSAYGRWHCSDMVREEMRVKGF 744
Query: 252 -----GCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKE---LGFVLNRS-------- 295
WI +NK++ F + ++ + D + +E + E G+V + S
Sbjct: 745 RKHPGRSWIIHENKVHSFYARDKSHPQAKDIHSGLELLIMECLKAGYVPDTSFVLHEVEE 804
Query: 296 -------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
Y + A GL+ G P R++K++ +CG H+ +++S + RE+ ++D
Sbjct: 805 HQKKDFLFYHSAKIAATYGLLMTRPGRPIRIVKNILLCGDCHTFLKYVSIVTGREIFLRD 864
Query: 349 PGSFHHFKDGKCSCKDAY 366
H F +G+CSCKD +
Sbjct: 865 ASGHHCFLNGQCSCKDYW 882
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 6/163 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN ++ + +K YE EL ++ GF ID +++ IL + + VG + A++
Sbjct: 240 WNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAA-RGLASMVGREIHAHV 298
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K G S+ +V N LI ++CG I F+ ++ ++WT +I+A + G AL
Sbjct: 299 IKIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLAL 358
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175
++F R N ++ + L + G +A F M E
Sbjct: 359 EVFDKMPAR----NSISYNAILSGFCQNGEGSKALAFFCRMVE 397
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 59/128 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ + ++ K+ E+ R++ ++ +S IL C+ + L +G Q A
Sbjct: 137 VSYTAMISGFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAI 196
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G +++ V N L+ + +CG +D F P ++ SW +IS+ V A
Sbjct: 197 VIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERA 256
Query: 132 LDLFKDKQ 139
+LF+D +
Sbjct: 257 FELFRDMR 264
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD-- 101
+ +++ +LN+C + + Q ++ K G S+ + L+++ +RCG++ DA
Sbjct: 402 LTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKM 461
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
+ S + S+ WT +I + P EA+ LF Q
Sbjct: 462 FSQGSFSQSGSIIWTSMICGYARNAQPEEAISLFCQSQ 499
>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
Length = 719
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 180/383 (46%), Gaps = 99/383 (25%)
Query: 78 ISHPA-VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
++P+ V N L+++ ++ G D A F+ +K+ +SWT +++ V++G EAL LF
Sbjct: 342 FTYPSLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFC 401
Query: 137 DKQWRYTSMNPTTF----------RSALKAYALMGLVGEAYRLF---------------- 170
+ R ++P S + YA G + +A ++F
Sbjct: 402 EM--RIMGIHPDQIVIAAVLSALDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIV 459
Query: 171 ------------LSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK--GIVPGKLCP 216
SMEEVY I+P EHY+ M++ LGR+G E E + + P
Sbjct: 460 GYAQNGRGRDYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPD---A 516
Query: 217 LIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYV------------------------- 251
+W+ LL + RVHG+++L + A + L EL+P V
Sbjct: 517 TVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLM 576
Query: 252 ---------GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV--LNRSL 296
GC WIE+ +K++ F+S + T+E+ K+ EI +KE G+V +N +L
Sbjct: 577 KLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFAL 636
Query: 297 -------------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERE 343
Y ++ AVA GL++ P G P R+ K++ +CG H+A +++S + R
Sbjct: 637 HDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRH 696
Query: 344 LVVKDPGSFHHFKDGKCSCKDAY 366
++++D FHHF++G CSC D +
Sbjct: 697 VILRDSNCFHHFREGACSCSDYW 719
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 15/180 (8%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ IL +C + G Q + + G ++ VG+ L+++ S+CG + +A
Sbjct: 239 NQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRML 298
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALK-----AYAL 159
++ + +SW +I V G EAL LF+ R+ ++ T+ S + YA
Sbjct: 299 ETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSLVNNALVDMYAK 358
Query: 160 MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEF-----IKGIVPGKL 214
G A+ +F M + I ++ +V G +EE L I GI P ++
Sbjct: 359 RGYFDYAFDVFEKMTDKDVIS-----WTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQI 413
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
+ ++ G + + N +++ S+CG++DDA F P+++ SW +I A N G
Sbjct: 29 RRFVNSCGTVHSSSDSNWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRL 88
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174
+EA LF + R + T+ S + Y G EA LF M+
Sbjct: 89 NEARKLFYETPIR----SCITWSSLISGYCRYGCDVEALELFWEMQ 130
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
Query: 12 IPWNLLLKA-CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
I W+ L+ C D E + EL +Q + ++ +L C +LL G Q A
Sbjct: 104 ITWSSLISGYCRYGCDVEAL-ELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHA 162
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK-NSLSWTFIISARVNHGHPS 129
+ K S+ V L+++ ++C I +A+ F+ P+K N + WT +++ +G
Sbjct: 163 HAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGH 222
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKA 156
+A++ F+D + N TF S L A
Sbjct: 223 KAIECFRDMRGEGIECNQFTFPSILTA 249
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I + G++++A F TP ++ ++W+ +IS +G EAL+LF + Q+
Sbjct: 76 NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV-- 202
N T+ S L+ ++ L+ + ++ + I+ + + +V L M+ +
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQI-----HAHAIKTQFDSNAFVVTGL--VDMYAKCKC 188
Query: 203 ---LEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231
E++ + P K ++W ++ +GD
Sbjct: 189 ILEAEYLFELAPDKRNHVLWTAMVTGYSQNGD 220
>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
Length = 587
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 106/409 (25%), Positives = 184/409 (44%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L + L ++++ ++ +L++C + L+ G Y
Sbjct: 180 VSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTY 239
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + VG L+++ ++CGKI A F + K+ L+W II+ HGH EA
Sbjct: 240 INDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEA 299
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LFK+ + N TF + L A + G+V E +L M Y IEP EHY +++
Sbjct: 300 QRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVID 359
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
L RAG+ EE +E I G +P + P LL R+HG+ +L + +L+ L P G
Sbjct: 360 LLARAGLLEEAMELI-GTMPMEPNPCALGALLGGCRIHGNFELGEMVGKRLINLQPCHSG 418
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNE---ELTSE 273
Y+ W IE++ ++ FV+ + +++
Sbjct: 419 RYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNK 478
Query: 274 VSDKLAEIEENMK-------ELGFVL---------NRSLYQTKMKAVALGLISFPHGMPT 317
+ +KL EI +K + G VL + ++ A+A GL+
Sbjct: 479 IYEKLNEIHTRLKSAIGHSADTGDVLLDMEEEDKEHALPVHSEKLAIAYGLLHLDSKEAI 538
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C H + +S + RE++V+D FHHF+DG+CSC D +
Sbjct: 539 RIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 587
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 7/158 (4%)
Query: 89 NINSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT 148
N + GK DDA F P ++ +SW +++ G P+EAL LF Q R + PT
Sbjct: 156 NNKNTFGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALF--DQMRAVGVKPT 213
Query: 149 --TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFI 206
T S L A A +G + + L + + IE + + +V+ + G +
Sbjct: 214 EATVVSLLSACAHLGALDKGLHLHTYIND-NRIEVNSIVGTALVDMYAKCGKISLATQVF 272
Query: 207 KGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+ + L W T++ +HG +K A+ ++ E
Sbjct: 273 NAMESKDV--LAWNTIIAGMAIHGHVKEAQRLFKEMKE 308
>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g40405
gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 102/409 (24%), Positives = 187/409 (45%), Gaps = 64/409 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + + + +QL ++ ++ +L++C L+ G A +Y
Sbjct: 206 IAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSY 265
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + + L+++ ++CG ++ A F EKN +W+ ++ +G +
Sbjct: 266 IERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKC 325
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+LF + + N TF S L+ +++G V E R F SM + IEP EHY +V+
Sbjct: 326 LELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVD 385
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
RAG E+ + I+ + P K +W +LL +SR++ +++L A K+LEL+ G
Sbjct: 386 LYARAGRLEDAVSIIQQM-PMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHG 444
Query: 249 MYV-------------------------------GCWI-EIQNKIYEFVSNEE------- 269
YV GC + E+ +++EF ++
Sbjct: 445 AYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQ 504
Query: 270 ---LTSEVSDKLA-------------EIEENMKELGFVLNRSLYQTKMKAVALGLISFPH 313
+ ++S +L +I+E KE L+ ++ A+A G++S
Sbjct: 505 IDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLH-----SEKAAIAFGIMSLKE 559
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
+P R++K++ +CG H +S I RE++V+D FHHFKDG CSC
Sbjct: 560 DVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSC 608
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 32/196 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI-------------- 90
D+Y++ ++ +C + G Q +RG + P V LI++
Sbjct: 107 DNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVF 166
Query: 91 NS-----------------RCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
NS RCG + A F+ PE++ ++W +IS G EAL+
Sbjct: 167 NSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALN 226
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
+F Q +N S L A +G + + R S E I+ + + +V+
Sbjct: 227 VFHLMQLEGVKVNGVAMISVLSACTQLGALDQG-RWAHSYIERNKIKITVRLATTLVDLY 285
Query: 194 GRAGMFEEVLEFIKGI 209
+ G E+ +E G+
Sbjct: 286 AKCGDMEKAMEVFWGM 301
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 109/415 (26%), Positives = 186/415 (44%), Gaps = 66/415 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ Y+ L + + + +I IL +C + +++G Y
Sbjct: 265 VSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVY 324
Query: 72 MTKR--GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ K+ + + P++ LI++ ++CG I+ A F S K+ SW +I HG +
Sbjct: 325 IDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRAN 384
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
DLF + + TF L A + G + +F SM + Y I P EHY M
Sbjct: 385 AGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCM 444
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---D 246
++ LG +G+F+E E IK +P + +IW +LL + R HG+++LA+ L+++ +
Sbjct: 445 IDLLGHSGLFKEAKEMIK-TMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPEN 503
Query: 247 PGMYV---------GCW-----------------------IEIQNKIYEFVSNEEL---- 270
PG YV G W IEI ++++EF+ ++L
Sbjct: 504 PGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRN 563
Query: 271 -------------------TSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISF 311
+ S+ L E+EE KE + ++ A+A GLIS
Sbjct: 564 REIYGMLEEMEALLEEAGFVPDTSEVLQEMEEEWKEGAL-----RHHSEKLAIAFGLIST 618
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G ++K++ +C H A + +S I +RE++ +D FHHF+DG CSC D +
Sbjct: 619 KPGTKLTIVKNLRVCRNCHEATKLVSKIYKREIIARDRTRFHHFRDGVCSCNDFW 673
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 1/157 (0%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
+ DV + WN ++ + Y+ EL + + D ++ +L++C + +G
Sbjct: 160 VKDV-VSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGR 218
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q +++ G S+ + N LI++ S+CG+++ A F+ K+ +SW +I +
Sbjct: 219 QVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMN 278
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
EAL LF++ S N T S L A A +G +
Sbjct: 279 LYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAI 315
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 80/174 (45%), Gaps = 7/174 (4%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQ 69
++ WN +L+ + D +L + + G + +SY+ +L SC G Q
Sbjct: 31 QLIWNTMLRGYALSSDPVSALKLY-VVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIH 89
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
++ K G V LI++ ++ G+++DA F + ++ +S+T +I+ + G+
Sbjct: 90 GHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIR 149
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
A ++F + + + ++ + + YA G EA LF M + ++ P E
Sbjct: 150 SAQEMFDEIPVK----DVVSWNAMISGYAETGSYKEALELFKEMMKT-NVRPDE 198
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 4/143 (2%)
Query: 16 LLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKR 75
LLK+C K+K +E ++ + D Y +++ L + + R
Sbjct: 71 FLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHR 130
Query: 76 GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
++S+ A LI + G I A F P K+ +SW +IS G EAL+LF
Sbjct: 131 DVVSYTA----LITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELF 186
Query: 136 KDKQWRYTSMNPTTFRSALKAYA 158
K+ + T + L A A
Sbjct: 187 KEMMKTNVRPDEGTMVTVLSACA 209
>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 583
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 106/376 (28%), Positives = 174/376 (46%), Gaps = 57/376 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS + +L++C +++G+ Y+ GL + +G LIN+ SRCG + A F
Sbjct: 207 DSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVF 266
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM-NPTTFRSALKAYALMGLV 163
E N +WT +ISA HG+ +A+DLF + S+ N TF + L A A GLV
Sbjct: 267 DKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACAHAGLV 326
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI--VPGKLCPLIWRT 221
+ ++ M E Y + P EH+ +V+ LGRAG +E FI+ + P +W
Sbjct: 327 EDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDEAYRFIQQLDATGNATAPALWTA 386
Query: 222 LLLSSRVHGDMKLAKYALDKLLEL---DPGMYVG-------------------------- 252
+L + ++H + L +L+ L +PG +V
Sbjct: 387 MLGACKMHRNYDLGVEIAKRLIALEPENPGHHVMLSNIYALSGKTDEVSHIRDRMMRNNL 446
Query: 253 ------CWIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGF------VLNRS-- 295
IE++NK Y F +E T E+ L + KE+G+ V+++
Sbjct: 447 RKQVGYSIIEVENKTYLFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEE 506
Query: 296 -------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
Y ++ AVA GL+ T V+K++ +C HSA +++S + R+++V+D
Sbjct: 507 EEKEFALRYHSEKLAVAFGLLKTVDSAIT-VVKNLRICEDCHSAFKYISIVSNRQIIVRD 565
Query: 349 PGSFHHFKDGKCSCKD 364
FHHF++G CSC D
Sbjct: 566 KLRFHHFQNGSCSCLD 581
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK 105
+Y+ ++ SC + L +G + G V L+ S+CG ++ A F
Sbjct: 107 NYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFD 166
Query: 106 STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP--TTFRSALKAYALMGLV 163
PEK+ ++W ++S +G +A+ +F Q R + P TF S L A A G +
Sbjct: 167 RMPEKSVVAWNSLVSGFEQNGLAEDAIRVF--YQMRESGFEPDSATFVSLLSACAQTGAI 224
>gi|115470801|ref|NP_001058999.1| Os07g0172600 [Oryza sativa Japonica Group]
gi|34394447|dbj|BAC83621.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113610535|dbj|BAF20913.1| Os07g0172600 [Oryza sativa Japonica Group]
Length = 872
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 116/409 (28%), Positives = 175/409 (42%), Gaps = 58/409 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLC--CGFIDSYSICDILNSCLNPILLNVGTQAQ 69
I WN LL A + +YE ++ FID + + +L +C G Q
Sbjct: 464 IAWNSLLAASFRDGEYEKALSTFLKMFRSNDVQFIDEFILTTVLGACGALGFAEFGKQMH 523
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ K GL+S VGN +I++ +CG ++ A FK P ++ +SW +I++ + H
Sbjct: 524 CFAAKSGLLSAQGVGNAIISMYGKCGALETAVNVFKRMPCRDLVSWNALITSHLLHRQGD 583
Query: 130 EALDLFKDKQWRYTSMNPTTFRSAL--KAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
E LDL+ + + TF + +Y + LFLSM +Y IEP+ EHY+
Sbjct: 584 EILDLWSQMERLPIKPDSVTFLLVISSCSYTSSNSADKCRELFLSMSSIYGIEPAVEHYA 643
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL-- 245
V LG G FEE + I G +P K L+WR+ L S +M + + A+ LL L
Sbjct: 644 AFVHVLGCWGHFEEAEQLI-GKMPFKPSALVWRSCLDSCNRQPNMTMRRLAMRHLLALEP 702
Query: 246 -DPGMYV--------------------------------GCWIEIQNKIYEFVSNEELTS 272
DP YV W N I+ F + +
Sbjct: 703 QDPSTYVLASNLYSESARWQCSESTRLKMREKGMRKIPARSWTFHGNSIHSFFARDRSHP 762
Query: 273 EVSDKLAEIE----ENMK-----ELGFVLNRS---------LYQTKMKAVALGLISFPHG 314
+ D A ++ E MK + FVL+ +Y + A GL+ HG
Sbjct: 763 QSKDIYAGLDVLILECMKAGYEPDTTFVLHDVEEYQKRHFLMYHSVKLAAMYGLLMSGHG 822
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCK 363
RV+K+V MCG HS + S +E++V+D FH F GKCSC+
Sbjct: 823 ETIRVVKNVRMCGDCHSFLEYTSAATGKEILVRDSAGFHIFCGGKCSCR 871
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN +L ++ Y+ EL ++ D +S+ +L + L+ G A
Sbjct: 220 WNTVLSGLVELGRYDEAFELFGDMRDSGVGADRFSLSALLAAAAEGFGLHEGAAVHALSL 279
Query: 74 KRGLISHPAVGNCLININSRCG-KIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K GL +VGN L+ + G I+D F+ P K+ +SWT +++ + G A+
Sbjct: 280 KSGLEMDLSVGNALVGFYAEHGHSIEDVVDVFERMPAKDVISWTGLLNGYMEFGLVDMAM 339
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAY 157
D+F R N T+ + L +
Sbjct: 340 DVFD----RMPVRNFVTYNAVLTGF 360
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
I ++ +LN+C + Q QA+ K G S P + LI++ +CG+ DA L
Sbjct: 393 ISDVTVTGVLNACAITAERKMSEQVQAFAIKCGCGSTPWIDAALIDMCIKCGRSGDAHLL 452
Query: 104 FKSTPEKNS--LSWTFIISARVNHGHPSEALDLF 135
F+ + S ++W +++A G +AL F
Sbjct: 453 FEKWRHEESFHIAWNSLLAASFRDGEYEKALSTF 486
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 5/111 (4%)
Query: 32 ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRG-----LISHPAVGNC 86
ELL R++L Y+ +L +C +G+Q A K V N
Sbjct: 132 ELLGRMRLAGMAPTEYTFVGLLTACARRGNPRLGSQVHALAVKGNSPCGGGGGSLLVDNA 191
Query: 87 LININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
L+ + + G+ DDA F ++ SW ++S V G EA +LF D
Sbjct: 192 LLGMYVKGGRFDDALKVFDGMERRDVSSWNTVLSGLVELGRYDEAFELFGD 242
>gi|125599274|gb|EAZ38850.1| hypothetical protein OsJ_23267 [Oryza sativa Japonica Group]
Length = 872
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 116/409 (28%), Positives = 175/409 (42%), Gaps = 58/409 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLC--CGFIDSYSICDILNSCLNPILLNVGTQAQ 69
I WN LL A + +YE ++ FID + + +L +C G Q
Sbjct: 464 IAWNSLLAASFRDGEYEKALSTFLKMFRSNDVQFIDEFILTTVLGACGALGFAEFGKQMH 523
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ K GL+S VGN +I++ +CG ++ A FK P ++ +SW +I++ + H
Sbjct: 524 CFAAKSGLLSAQGVGNAIISMYGKCGALETAVNVFKRMPCRDLVSWNALITSHLLHRQGD 583
Query: 130 EALDLFKDKQWRYTSMNPTTFRSAL--KAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
E LDL+ + + TF + +Y + LFLSM +Y IEP+ EHY+
Sbjct: 584 EILDLWSQMERLPIKPDSVTFLLVISSCSYTSSNSADKCRELFLSMSSIYGIEPAVEHYA 643
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL-- 245
V LG G FEE + I G +P K L+WR+ L S +M + + A+ LL L
Sbjct: 644 AFVHVLGCWGHFEEAEQLI-GKMPFKPSALVWRSCLDSCNRQPNMTMRRLAMRHLLALEP 702
Query: 246 -DPGMYV--------------------------------GCWIEIQNKIYEFVSNEELTS 272
DP YV W N I+ F + +
Sbjct: 703 QDPSTYVLASNLYSESARWQCSESTRLKMREKGMRKIPARSWTFHGNSIHSFFARDRSHP 762
Query: 273 EVSDKLAEIE----ENMK-----ELGFVLNRS---------LYQTKMKAVALGLISFPHG 314
+ D A ++ E MK + FVL+ +Y + A GL+ HG
Sbjct: 763 QSKDIYAGLDVLILECMKAGYEPDTTFVLHDVEEYQKRHFLMYHSVKLAAMYGLLMSGHG 822
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCK 363
RV+K+V MCG HS + S +E++V+D FH F GKCSC+
Sbjct: 823 ETIRVVKNVRMCGDCHSFLEYTSAATGKEILVRDSAGFHIFCGGKCSCR 871
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN +L ++ Y+ EL ++ D +S+ +L + L+ G A
Sbjct: 220 WNTVLSGLVELGRYDEAFELFGDMRDSGVGADRFSLSALLAAAAEGFGLHEGAAVHALSL 279
Query: 74 KRGLISHPAVGNCLININSRCG-KIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K GL +VGN L+ + G I+D F+ P K+ +SWT +++ + G A+
Sbjct: 280 KSGLEMDLSVGNALVGFYAEHGHSIEDVVDVFERMPAKDVISWTGLLNGYMEFGLVDMAM 339
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAY 157
D+F R N T+ + L +
Sbjct: 340 DVFD----RMPVRNFVTYNAVLTGF 360
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
I ++ +LN+C + Q QA+ K G S P + LI++ +CG+ DA L
Sbjct: 393 ISDVTVTGVLNACAITAERKMSEQVQAFAIKCGCGSTPWIDAALIDMCIKCGRSGDAHLL 452
Query: 104 FKSTPEKNS--LSWTFIISARVNHGHPSEALDLF 135
F+ + S ++W +++A G +AL F
Sbjct: 453 FEKWRHEESFHIAWNSLLAASFRDGEYEKALSTF 486
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 5/111 (4%)
Query: 32 ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRG-----LISHPAVGNC 86
ELL R++L Y+ +L +C +G+Q A K V N
Sbjct: 132 ELLGRMRLAGMAPTEYTFVGLLTACARRGNPRLGSQVHALAVKGNSPCGGGGGSLLVDNA 191
Query: 87 LININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
L+ + + G+ DDA F ++ SW ++S V G EA +LF D
Sbjct: 192 LLGMYVKGGRFDDALKVFDGMERRDVSSWNTVLSGLVELGRYDEAFELFGD 242
>gi|125557391|gb|EAZ02927.1| hypothetical protein OsI_25067 [Oryza sativa Indica Group]
Length = 678
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 116/409 (28%), Positives = 175/409 (42%), Gaps = 58/409 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLC--CGFIDSYSICDILNSCLNPILLNVGTQAQ 69
I WN LL A + +YE ++ FID + + +L +C G Q
Sbjct: 270 IAWNSLLAASFRDGEYEKALSTFLKMFRSNDVQFIDEFILTTVLGACGALGFAEFGKQMH 329
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ K GL+S VGN +I++ +CG ++ A FK P ++ +SW +I++ + H
Sbjct: 330 CFAAKSGLLSAQGVGNAIISMYGKCGALETAVNVFKRMPCRDLVSWNALITSHLLHRQGD 389
Query: 130 EALDLFKDKQWRYTSMNPTTFRSAL--KAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
E LDL+ + + TF + +Y + LFLSM +Y IEP+ EHY+
Sbjct: 390 EILDLWSQMERLPIKPDSVTFLLVISSCSYTSSNSADKCRELFLSMSSIYGIEPAVEHYA 449
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL-- 245
V LG G FEE + I G +P K L+WR+ L S +M + + A+ LL L
Sbjct: 450 AFVHVLGCWGHFEEAEQLI-GKMPFKPSALVWRSCLDSCNRQPNMTMRRLAMRHLLALEP 508
Query: 246 -DPGMYV--------------------------------GCWIEIQNKIYEFVSNEELTS 272
DP YV W N I+ F + +
Sbjct: 509 QDPSTYVLASNLYSESARWQCSESTRLKMREKGMRKIPARSWTFHGNSIHSFFARDRSHP 568
Query: 273 EVSDKLAEIE----ENMK-----ELGFVLNRS---------LYQTKMKAVALGLISFPHG 314
+ D A ++ E MK + FVL+ +Y + A GL+ HG
Sbjct: 569 QSKDIYAGLDVLILECMKAGYEPDTTFVLHDVEEYQKRHFLMYHSVKLAAMYGLLMSGHG 628
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCK 363
RV+K+V MCG HS + S +E++V+D FH F GKCSC+
Sbjct: 629 ETIRVVKNVRMCGDCHSFLEYTSAATGKEILVRDSAGFHIFCGGKCSCR 677
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN +L ++ Y+ EL ++ D +S+ +L + L+ G A
Sbjct: 26 WNTVLSGLVELGRYDEAFELFGDMRDSGVGADRFSLSALLAAAAEGFGLHEGAAVHALSL 85
Query: 74 KRGLISHPAVGNCLININSRCG-KIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K GL +VGN L+ + G I+D F+ P K+ +SWT +++ + G A+
Sbjct: 86 KSGLEMDLSVGNALVGFYAEHGHSIEDVVDVFERMPAKDVISWTGLLNGYMEFGLVDMAM 145
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAY 157
D+F R N T+ + L +
Sbjct: 146 DVFD----RMPVRNFVTYNAVLTGF 166
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
I ++ +LN+C + Q QA+ K G S P + LI++ +CG+ DA L
Sbjct: 199 ISDVTVTGVLNACAITAERKMSEQVQAFAIKCGCGSTPWIDAALIDMCIKCGRSGDAHLL 258
Query: 104 FKSTPEKNS--LSWTFIISARVNHGHPSEALDLF 135
F+ + S ++W +++A G +AL F
Sbjct: 259 FEKWRHEESFHIAWNSLLAASFRDGEYEKALSTF 292
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 105/404 (25%), Positives = 183/404 (45%), Gaps = 55/404 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ + + Y EL ++Q G + ++ +L++C + L++G
Sbjct: 256 VSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHR 315
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
++ + + +GN L ++ ++CG + +A F E++ +SW+ II +G+ +E
Sbjct: 316 FIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANE 375
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A + F + N +F L A GLV + F M +VY I P EHY +V
Sbjct: 376 AFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVV 435
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG-- 248
+ L RAG ++ I + P + ++W LL R++ D + + + ++LELD
Sbjct: 436 DLLSRAGRLDQAESLINSM-PMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHS 494
Query: 249 ---MYV-----------------------------GC-WIEIQNKIYEFV---SNEELTS 272
+Y+ GC WIEI N +YEF S+ +
Sbjct: 495 GSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSL 554
Query: 273 EVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGMPT 317
+ + E++ MK G+ L ++ A+A GLI+ G
Sbjct: 555 RIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTI 614
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCS 361
R++K++ +C H A + +S I+ERE+VV+D FHHFKDGKCS
Sbjct: 615 RIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 35/170 (20%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN--------------- 89
D Y+ +L +C + G + ++TK G S+ V N L++
Sbjct: 126 DEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLF 185
Query: 90 --------------INSRC--GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
I+ C G +D A + F EKN +SW+ +IS G+ EA
Sbjct: 186 DEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQ 245
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
LF++ R N ++ + + YA +A LF M+ + P++
Sbjct: 246 LFENMPMR----NVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPND 291
>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Brachypodium distachyon]
Length = 635
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 109/415 (26%), Positives = 190/415 (45%), Gaps = 66/415 (15%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
E+ W+ L+ +K + ++ + + ++ ++ L++ LL G
Sbjct: 228 EVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHGRFVHE 287
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ + G+ VG L+++ S+CG + A F P ++ +W +I +HG +
Sbjct: 288 VVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASHGLGQD 347
Query: 131 ALDLFKDKQWRY--TSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
A++LF WR+ + PT TF L A + GLV E R F M + Y IEP EHY
Sbjct: 348 AVELF----WRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEHY 403
Query: 187 SIMVEALGRAGMFEEVLEFIKG--IVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
MV+ LGRAG+ E +E I+G I P P++W T+L + + H + L +KL+E
Sbjct: 404 GCMVDLLGRAGLVSEAIELIEGMHIAPD---PVLWGTVLSACKTHNLVDLGITVGNKLIE 460
Query: 245 LDP---GMYV------------------------------GCW--IEIQNKIYEFVSNE- 268
L+P G YV W +E Q +++F+ +
Sbjct: 461 LEPAHDGHYVLLASIYAKAKKWDEVREVRKLMSSRGTGKSAGWSLMEAQGNLHKFLVGDM 520
Query: 269 --ELTSEVSDKLAEIEENMKELGFVLNRS-----------LYQTKMK----AVALGLISF 311
+ + ++ + L I + + G+V + S ++ K+ A+A G I
Sbjct: 521 DHKDSVQIYNMLDMINRRLADAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVT 580
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G P R++K++ +CG H + ++ + RE++V+D FHH K+GKCSC D +
Sbjct: 581 EVGSPIRIVKNLQVCGDCHEFSKMVTKVFNREIIVRDGSRFHHMKEGKCSCLDYW 635
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N ++ R G + A F+ P ++ +SW+ ++ V G AL +F+D +
Sbjct: 201 NAVLAGYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVR 260
Query: 145 MNPTTFRSALKAYALMGLV 163
+N +AL A A MGL+
Sbjct: 261 VNEAAVVTALSAAAQMGLL 279
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 114/413 (27%), Positives = 186/413 (45%), Gaps = 68/413 (16%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W ++ ++ + E+ +Q + +I +L++C L +G ++YM
Sbjct: 217 WTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMD 276
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K + + VG LIN+ SRCG ID+A F+ EKN +++ +I HG EA++
Sbjct: 277 KHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVE 336
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF+ + + + TF L A + GL + +F SM + Y IEP EHY MV+ L
Sbjct: 337 LFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLL 396
Query: 194 GRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLL---ELDPG 248
GR G EE FI+ + K+ P ++ LL + ++HG+++LA+ L+ D G
Sbjct: 397 GRLGRLEEAYSFIRMM---KVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNADSG 453
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSN--------- 267
Y+ G W IE+ N+I+EF+
Sbjct: 454 TYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGDLRHPQKEK 513
Query: 268 -----EEL---------TSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPH 313
EEL T L +IE++ KE + ++ A+ GLIS
Sbjct: 514 IYKKLEELNQILRLEGYTPATEVVLHDIEKSEKEWALAI-----HSERLAICYGLISTKP 568
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV+K++ +C H + +S I R++VV+D FHHF++G CSC D +
Sbjct: 569 LTTLRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 106/276 (38%), Gaps = 64/276 (23%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DSY++ +L +C + L G + + + K GL S+ ++ LI + +CG +DA F
Sbjct: 129 DSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVF 188
Query: 105 KSTPE------------------KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN 146
PE K+++ WT +I V +G + AL++F++ Q N
Sbjct: 189 DEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPN 248
Query: 147 PTTFRSALKA-----------------------------------YALMGLVGEAYRLFL 171
T L A Y+ G + EA R+F
Sbjct: 249 EVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFE 308
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP-LIWRTLLLSSRVHG 230
M+E I Y+ M+ G E +E +G++ P + +L++ HG
Sbjct: 309 QMKEKNVIT-----YNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHG 363
Query: 231 DMKLAKYALDKLLELDPGM-----YVGCWIEIQNKI 261
+ + + + D G+ + GC +++ ++
Sbjct: 364 GLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRL 399
>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 112/410 (27%), Positives = 191/410 (46%), Gaps = 59/410 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN+++ + +L ++Q+ D+ SI +L +C + +G + Y
Sbjct: 272 ISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEY 331
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ ++ L + + N LI++ ++CG + +A F ++ +SWT +ISA G +A
Sbjct: 332 VERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDA 391
Query: 132 LDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
+ LF K+ R + P F S L A + GLV E F M E Y I P EHY+ M
Sbjct: 392 VALF--KKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMAE-YGITPGIEHYNCM 448
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
V+ LGRAG +E + + P + +W +LL + RV+ M +A A D L +L P
Sbjct: 449 VDLLGRAGKIDEAYHLTRQM-PMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQ 507
Query: 248 -GMYV---------GCW-----------------------IEIQNKIYEFVSNEE---LT 271
G YV G W +EI + +Y F++ ++ +
Sbjct: 508 SGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQS 567
Query: 272 SEVSDKLAEIEENMKELGFV--LNRSLYQTKMK-------------AVALGLISFPHGMP 316
E+ L + MKELG++ + +L+ + + A+ +++ G
Sbjct: 568 KEIYKALGVLVGRMKELGYMPETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKPGST 627
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+ K++ +CG H A + +S I ERE++++D FHHF+DG CSC D +
Sbjct: 628 IRITKNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
+ D+Y+ +L +C L VG Q + K GL + +GN L+++ +C +D A
Sbjct: 134 YPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARR 193
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
P ++ +SW +++ +G ++AL L ++ +
Sbjct: 194 VLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREME 230
>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 637
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 112/421 (26%), Positives = 190/421 (45%), Gaps = 68/421 (16%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSY-SICDILNSCLNPILLNVGTQAQ 69
E+ W +++ + + LL+ + CGF S+ ++C +L++C + VG
Sbjct: 220 EVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRLSFVTLCSVLSACSQSGDVCVGRWVH 279
Query: 70 AYMTKR-GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
Y K GL VG L+++ ++CG+I+ A F+S ++N ++W ++ HG
Sbjct: 280 CYAVKEMGLDFGVMVGTSLVDMYAKCGRINAALSVFRSMLKRNVVAWNAMLGGLAMHGMG 339
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
A+D+F + TF + L A + GLV + + F +E VY I+P EHY+
Sbjct: 340 KIAVDMFPS-MVEEVKPDGVTFMALLSACSHSGLVEKGWDYFHDLEPVYRIKPEIEHYAC 398
Query: 189 MVEALGRAGMFEEVLEFIKGI-VPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
MV LGRAG EE +K + +P ++ +L+ S HG ++L + + LLE+DP
Sbjct: 399 MVGLLGRAGRLEEAEIMVKNMRIPPN--EVVLGSLIGSCYAHGRLQLGEKIMRDLLEMDP 456
Query: 248 ----------GMYV-------------------------GCWIEIQNKIYEFVSNEE--- 269
MY I + K+++F++ ++
Sbjct: 457 LNTEYHIVLSNMYALSGKVEKANSLRQVLKKRGIKKVPGMSSIYVDGKLHQFIAGDKSHT 516
Query: 270 LTSEVSDKLAEIEENMKELGFVLNRS------------------------LYQTKMKAVA 305
TSE+ KL E+ ++ G+V N S ++ A+
Sbjct: 517 RTSEIYMKLDEMICRLRSAGYVPNTSCQVLFGCSNRDDCSESLEEVEQVLFTHSEKLALC 576
Query: 306 LGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDA 365
GL+S P G P + K++ +C HSA + S + +RE+VV+D FH FK G CSC D
Sbjct: 577 FGLMSTPSGSPLHIFKNLRICQDCHSAIKIASKVYKREIVVRDRYRFHSFKHGSCSCSDY 636
Query: 366 Y 366
+
Sbjct: 637 W 637
>gi|357501199|ref|XP_003620888.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495903|gb|AES77106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 446
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 161/351 (45%), Gaps = 31/351 (8%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F D +L C + L +G + ++ + + + N LI + +CG + DA
Sbjct: 96 FADYSDFLSLLKLCEDLKSLELGKRVHEFLRRSKFGGNVELCNRLIGLYVKCGSVKDARK 155
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F P++N S +I +G + L +FK + + + TF L AL+
Sbjct: 156 VFDKMPDRNVGSLNLMIGGYNVNGLGIDGLLVFKQMRQQGVVPDEETFALVLAVCALVDG 215
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V E F SM+E Y I P EHY +V G AG +E EFI+ + P + +W TL
Sbjct: 216 VEEGLMQFESMKE-YGIVPGMEHYLGVVNIFGCAGRLDEAHEFIENM-PIEAGVELWETL 273
Query: 223 LLSSRVHGDMKLAKYALDKLLELDPGMYVG--------------CWIEIQNKIYEFVSNE 268
+R+HGD++ A + L LDP +E +N++ E+ N
Sbjct: 274 RNFARIHGDLEREDCADELLTVLDPSKAAADKVPLPQRKKQSAINMLEEKNRVSEYRCNM 333
Query: 269 ELTSEVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPH 313
E KL + M+E G+V + Y ++ A+A GLIS P
Sbjct: 334 PYKEEGDVKLRGLTGQMREAGYVPDTRYVLHDIDEEEKEKALQYHSERLAIAYGLISTPP 393
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
R+IK++ +CG H+A + MS I+ REL+V+D FHHFKDGKCSC D
Sbjct: 394 RTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSCGD 444
>gi|356521500|ref|XP_003529393.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15690-like [Glycine max]
Length = 588
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 160/344 (46%), Gaps = 33/344 (9%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+ +SC L +A + + S + N +I + C + DA F P ++
Sbjct: 249 LFDSCGQSKSLEDAKKAHDHFLQSTFRSDLTLNNKVIEMYGNCKSMTDARRVFDHMPNRD 308
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
SW ++ N+ + EAL LF+ + T + L A A V +A+ F
Sbjct: 309 MDSWHLMMRGYANNTNGDEALQLFEQMNELGLEITSETLLAVLSACASAEDVEDAFLHFE 368
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231
SM+ Y IEP HY +++ LG++ +E EFI + P + +W L +R HGD
Sbjct: 369 SMKSKYGIEPVVGHYMGLLDVLGQSAYLKEAEEFIDQL-PFEPTVAVWEKLKHYARAHGD 427
Query: 232 MKLAKYALDKLLELDPGMYVGCWIEI--------------QNKIYEFVSNEELTSEVSDK 277
L Y + ++ LDP V I + +N+I E+ N L + +K
Sbjct: 428 FDLEDYTEELIVSLDPSKAVANKIPMPPPKKYTAINMLDGRNRIIEY-KNPTLYKD-DEK 485
Query: 278 LAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPTRVIKS 322
L + MKE G+V + LY ++ A+A GLIS P P R+IK+
Sbjct: 486 LKALS-GMKEAGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPPRTPLRIIKN 544
Query: 323 VGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ +CG H+A + MS I+ REL+V+D FHHFKDGKCSC D +
Sbjct: 545 LRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 588
>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 177/372 (47%), Gaps = 54/372 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S ++ +L++C L G + A+ + G+ + N ++++ RCG+ A F
Sbjct: 499 NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQF 558
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
S +K+ +W +++ G A++LF + TF S L A + G+V
Sbjct: 559 NSQ-KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVT 617
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E F M+ Y++ P+ +HY+ +V+ LGRAG ++ +FI+ + P + IW LL
Sbjct: 618 EGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDM-PIRPDAAIWGALLN 676
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMYVGC--------------------- 253
+ R+H +++L + A ++ E D +Y GC
Sbjct: 677 ACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSAD 736
Query: 254 ----WIEIQNKIYEFVSNEELTS---EVSDKLAEIEENMKELGFVLNRSLYQTKM----- 301
W+EI+ K++ F+S + S E++ L MKE GF +S + +++
Sbjct: 737 PGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSEIESSRA 796
Query: 302 ---------KAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
+A+A GLI+ GMP V K++ MC H+ +F+STI+ RE+ V+D +
Sbjct: 797 DIFCGHSERQAIAFGLINTAPGMPIWVTKNLYMCHSCHNMVKFISTIVRREISVRDVEEY 856
Query: 353 HHFKDGKCSCKD 364
HHFKDG CSC D
Sbjct: 857 HHFKDGVCSCGD 868
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 7/145 (4%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+L+ KA ++ L R+ + Y+ +L +C + G + A++
Sbjct: 166 WNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVI 225
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ G S VGN LI + +CG I +A + F P+++ +SW +IS +G E L+
Sbjct: 226 RFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLE 285
Query: 134 LFKDKQWRYTSMNP-----TTFRSA 153
LF R S++P TT SA
Sbjct: 286 LF--SMMRELSVDPDLITMTTVASA 308
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 105/251 (41%), Gaps = 37/251 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + + K E + ++L D ++ +L++C L++G +
Sbjct: 366 VSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEI 425
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWT-FIISARVNHGHPSE 130
K GL+SH V N LI++ S+C +D+A F++ KN +SWT I+ R+N+ E
Sbjct: 426 AIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINN-RSFE 484
Query: 131 ALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
AL F+ + SM P T S L A A +G + + E H
Sbjct: 485 ALLFFRQMK---ESMKPNSVTLISVLSACARIGAL---------------MRGKEIHAHA 526
Query: 189 MVEALGRAGMF-EEVLEFIKGIVPGKLCPLI------------WRTLLLSSRVHGDMKLA 235
+ +G G +L+ + G+ P + W LL G KLA
Sbjct: 527 LRTGVGFDGFLPNAILDMY--VRCGRKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLA 584
Query: 236 KYALDKLLELD 246
DK+LEL+
Sbjct: 585 VELFDKMLELE 595
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
+G Y+ K ++ N LI + S G++++A+ F K+ +SWT +I++ V
Sbjct: 317 LGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLV 376
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF---LSMEEVYHIE 180
+H P +A++ +K + + T S L A A +G + RL + V H+
Sbjct: 377 SHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVI 436
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVH 229
S +++ + + LE + I + W +L+L R++
Sbjct: 437 VSNS----LIDMYSKCKCVDNALEVFRNISGKNVVS--WTSLILGLRIN 479
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
+GN L+++ R G + DA F E++ SW ++ G EAL+L+ W
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193
Query: 143 TSMNPTTFRSALKAYA 158
N TF S LK A
Sbjct: 194 IRPNVYTFPSVLKTCA 209
>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
Length = 584
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 115/414 (27%), Positives = 187/414 (45%), Gaps = 63/414 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERI---QLCCGFIDSYSICDILNSCLNPILLNVGTQA 68
+ WN +L C+ +Y+ + + Q C D ++ ++++ L G A
Sbjct: 175 VSWNTVLSWCVVNGEYDEAIAVFREMLASQEC--QPDRVTLVSVVSAIAYLGALAHGLWA 232
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSL-SWTFIISARVNHGH 127
AY+ ++ + + + LIN+ S+CG I+ A F + K SL +W +++ +G+
Sbjct: 233 HAYVFRKCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGFTANGY 292
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
AL+LF + N TF + L A + GLV E + F M Y IEP HY
Sbjct: 293 SERALELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYG 352
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL-- 245
MV+ RAGMFE+ E I+ +P + + + LL + R H +++L K +L+E
Sbjct: 353 CMVDLFCRAGMFEKAEEIIQ-TMPMEPDASMLKALLGACRTHKNLELGKKVGHRLIEAAA 411
Query: 246 -DPGMYV---------GCW-----------------------IEIQNKIYEFVSNEELTS 272
D YV G W +E+ I+EF+S ++ S
Sbjct: 412 NDHAGYVLLSNIYALDGNWGGVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDKSHS 471
Query: 273 EVSD---KLAEIEENMKELGFVLNRS-----------------LYQTKMKAVALGLISFP 312
D L EI + +K G+ + S L+ K+ A+A GLIS
Sbjct: 472 RKRDIYKMLGEICQQLKSSGYTPDTSQVLLDIDDEDVKESSLALHSEKL-AIAFGLISTA 530
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G P RV+ ++ +CG H+A + +S I R ++V+D FHHF+ G CSC D +
Sbjct: 531 PGTPIRVVNNLRICGDCHNAIKLISKIYGRCIIVRDANRFHHFRKGSCSCGDYW 584
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 56/150 (37%), Gaps = 4/150 (2%)
Query: 55 SCLNPILLNVGTQAQAYMTKRGLI-SHPAVGNCLININSRCGKIDDADLAFKSTPEKNSL 113
SC Q A+ KRGL+ SH V L++ + CG + A F + + +
Sbjct: 84 SCARARDRATAAQLHAHAAKRGLVASHRRVRCRLVHAYAVCGMLPHARRVFDGGTDNDMV 143
Query: 114 SWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSM 173
+W ++ G DL +D R S + ++ + L + G EA +F M
Sbjct: 144 AWNCLLRGYAQEGGDE---DLLRDFFARMPSRDSVSWNTVLSWCVVNGEYDEAIAVFREM 200
Query: 174 EEVYHIEPSEEHYSIMVEALGRAGMFEEVL 203
+P +V A+ G L
Sbjct: 201 LASQECQPDRVTLVSVVSAIAYLGALAHGL 230
>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 177/372 (47%), Gaps = 54/372 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S ++ +L++C L G + A+ + G+ + N ++++ RCG+ A F
Sbjct: 499 NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQF 558
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
S +K+ +W +++ G A++LF + TF S L A + G+V
Sbjct: 559 NSQ-KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVT 617
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E F M+ Y++ P+ +HY+ +V+ LGRAG ++ +FI+ + P + IW LL
Sbjct: 618 EGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDM-PIRPDAAIWGALLN 676
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMYVGC--------------------- 253
+ R+H +++L + A ++ E D +Y GC
Sbjct: 677 ACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSAD 736
Query: 254 ----WIEIQNKIYEFVSNEELTS---EVSDKLAEIEENMKELGFVLNRSLYQTKM----- 301
W+EI+ K++ F+S + S E++ L MKE GF +S + +++
Sbjct: 737 PGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSEIESSRA 796
Query: 302 ---------KAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
+A+A GLI+ GMP V K++ MC H+ +F+STI+ RE+ V+D +
Sbjct: 797 DIFCGHSERQAIAFGLINTAPGMPIWVXKNLYMCHSCHNMVKFISTIVRREISVRDVEEY 856
Query: 353 HHFKDGKCSCKD 364
HHFKDG CSC D
Sbjct: 857 HHFKDGVCSCGD 868
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 7/145 (4%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+L+ KA ++ L R+ + Y+ +L +C + G + A++
Sbjct: 166 WNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVI 225
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ G S VGN LI + +CG I +A + F P+++ +SW +IS +G E L+
Sbjct: 226 RFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLE 285
Query: 134 LFKDKQWRYTSMNP-----TTFRSA 153
LF R S++P TT SA
Sbjct: 286 LF--SMMRELSVDPDLITMTTVASA 308
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 105/251 (41%), Gaps = 37/251 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ + + K E + ++L D ++ +L++C L++G +
Sbjct: 366 VSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEI 425
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWT-FIISARVNHGHPSE 130
K GL+SH V N LI++ S+C +D+A F++ KN +SWT I+ R+N+ E
Sbjct: 426 AIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINN-RSFE 484
Query: 131 ALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
AL F+ + SM P T S L A A +G + + E H
Sbjct: 485 ALLFFRQMK---ESMKPNSVTLISVLSACARIGAL---------------MRGKEIHAHA 526
Query: 189 MVEALGRAGMF-EEVLEFIKGIVPGKLCPLI------------WRTLLLSSRVHGDMKLA 235
+ +G G +L+ + G+ P + W LL G KLA
Sbjct: 527 LRTGVGFDGFLPNAILDMY--VRCGRKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLA 584
Query: 236 KYALDKLLELD 246
DK+LEL+
Sbjct: 585 VELFDKMLELE 595
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
+G Y+ K ++ N LI + S G++++A+ F K+ +SWT +I++ V
Sbjct: 317 LGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLV 376
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF---LSMEEVYHIE 180
+H P +A++ +K + + T S L A A +G + RL + V H+
Sbjct: 377 SHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVI 436
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVH 229
S +++ + + LE + I + W +L+L R++
Sbjct: 437 VSNS----LIDMYSKCKCVDNALEVFRNISGKNVVS--WTSLILGLRIN 479
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
+GN L+++ R G + DA F E++ SW ++ G EAL+L+ W
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193
Query: 143 TSMNPTTFRSALKAYA 158
N TF S LK A
Sbjct: 194 IRPNVYTFPSVLKTCA 209
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 171/372 (45%), Gaps = 56/372 (15%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
S+ +L++C G ++ K G +V N LI++ SRCG + A L F+
Sbjct: 438 SLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEGM 497
Query: 108 PEKNSL-SWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
EK S+ SWT +I+ HGH EA+ +F + + +F S L A + GL+ E
Sbjct: 498 QEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIKEG 557
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226
F M+ VYHIEP+ EHY MV+ GR+G ++ FI + P ++WRTLL +
Sbjct: 558 EGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQM-PIPPTAIVWRTLLGAC 616
Query: 227 RVHGDMKLAKYALDKLLELDPG------------MYVGCW-------------------- 254
HG+++LA+ +L ELDP G W
Sbjct: 617 SSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKDVASIRKSMIVQRIKKITA 676
Query: 255 ---IEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMK-ELGFV--LNRSLY-------- 297
+E+ +Y+F + E E+ E +KL EI ++ E G+ + +LY
Sbjct: 677 WSLVEVGKTMYKFTACEKKKEIDIEAHEKLKEIILRLRDEAGYAPEVASALYDVEEEEKE 736
Query: 298 -----QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
++ A+A L P G R++K++ +C H+ + S + E+V++D F
Sbjct: 737 DQVSKHSEKLALAFALARLPKGANIRIVKNLRICRDCHAVMKLTSRVYGVEIVIRDRNRF 796
Query: 353 HHFKDGKCSCKD 364
H FKDG CSC D
Sbjct: 797 HSFKDGSCSCGD 808
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 9/174 (5%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F DS+S ++ + N L G Q K GL SH V LI + CG + A
Sbjct: 270 FPDSFSFAFVVKAAANFRSLRTGFQMHCQALKHGLDSHLFVATTLIGMYGECGCVGFARK 329
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F P+ N ++W +++A S A ++F R N T++ L Y G
Sbjct: 330 VFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKMLVR----NHTSWNVMLAGYIKAGE 385
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP 216
+ A R+F M + +S M+ G F E + + ++ ++ P
Sbjct: 386 LECAKRIFSEMPHRDDVS-----WSTMIVGFSHNGSFNESFSYFRELLRAEMRP 434
>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Brachypodium distachyon]
Length = 868
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 163/353 (46%), Gaps = 53/353 (15%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G + A++ ++G+ S V N L+++ +CG+ A F + K+ +SW +++
Sbjct: 513 LRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLAG 572
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
V HGH AL F + + TF + L + G+V + + LF SM E Y I P
Sbjct: 573 FVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIVP 632
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
+ +HY+ MV+ L R G E FI + P +W LL R+H +++L + A
Sbjct: 633 NLKHYACMVDLLSRVGRLTEGYNFINRM-PITPDAAVWGALLNGCRIHRNIELGELAAKI 691
Query: 242 LLELDP----------------GMYV------------------GC-WIEIQNKIYEFVS 266
+LEL+P GM+ GC W+E++ I+ F++
Sbjct: 692 VLELEPNDAGYHVLLSDLYADAGMWAEVSKVRKTMRVKGLEHDYGCSWVEVKGAIHAFLT 751
Query: 267 NEE---LTSEVSDKLAEIEENMKELGF--VLNRSLYQTKMK------------AVALGLI 309
++E E++D L I E MK GF V + SL ++ AVA GLI
Sbjct: 752 DDESHPQIKEINDVLDGIYERMKASGFAPVESYSLEDKEVSKDDVLCGHSERLAVAFGLI 811
Query: 310 SFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
+ G V K+ C H R +S I+ RE+ V+D FHHF+DG CSC
Sbjct: 812 NTTPGTSICVTKNQYTCESCHGILRMISKIVRREITVRDTKEFHHFRDGSCSC 864
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+++ KA E +L R+ D Y+ +L SC L +G + A++
Sbjct: 163 WNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVL 222
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ GL V N L+ + ++CG ++ A F + +SW +I+ + L+
Sbjct: 223 RFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLE 282
Query: 134 LF 135
LF
Sbjct: 283 LF 284
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L+ + A KRG + A N LI + S G++ +A F ++++SWT +IS
Sbjct: 312 LDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISG 371
Query: 122 RVNHGHPSEALDLF 135
+G P +AL+++
Sbjct: 372 YEKNGFPDKALEVY 385
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L+VG + T +G I + V N L+ + ++ I+ A FK P+K+ +SW+ +I+
Sbjct: 413 LDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAG 472
Query: 122 RVNHGHPSEALDLFK 136
+ EAL F+
Sbjct: 473 FCFNHKNFEALYYFR 487
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/412 (26%), Positives = 188/412 (45%), Gaps = 60/412 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN+L+ Y+ L + + + ++ IL++C + +++G Y
Sbjct: 262 ISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVY 321
Query: 72 MTKR--GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ KR G+ + ++ LI++ S+CG I+ A F S K+ +W +I HG +
Sbjct: 322 IDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRAN 381
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
A D+F + + TF L A + G++ +F SM Y I P EHY M
Sbjct: 382 AAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCM 441
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLEL-- 245
++ LG +G+F+E E I + + P +IW +LL + ++HG+++L + L ++
Sbjct: 442 IDLLGHSGLFKEAEEMISTMT---MEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEP 498
Query: 246 -DPGMYV---------GCW-----------------------IEIQNKIYEFVSNEEL-- 270
+PG YV G W IEI + ++EF+ ++
Sbjct: 499 NNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHP 558
Query: 271 -TSEVSDKLAEIEENMKELGFVLNRSLYQTKMK---------------AVALGLISFPHG 314
E+ L E+E ++E GFV + S +M+ A+A GLIS
Sbjct: 559 RNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEFKEGALRHHSEKLAIAFGLISTKPE 618
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +C H A + +S I +RE++ +D FHHF+DG CSC D +
Sbjct: 619 TKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 670
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 1/157 (0%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
+ DV + WN ++ ++ +Y+ EL + + D ++ ++++ + +G
Sbjct: 157 VKDV-VSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGR 215
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q +++ G S+ + N LI+ S+CG+++ A F K+ +SW +I +
Sbjct: 216 QVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLN 275
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
EAL LF++ S N T S L A A +G +
Sbjct: 276 LYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAI 312
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 69/156 (44%), Gaps = 5/156 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+SY+ +L SC G Q ++ K G V LI++ + +++DA F
Sbjct: 62 NSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVF 121
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ ++ +S+T +++ + G+ A ++F + + + ++ + + Y G
Sbjct: 122 DRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVK----DVVSWNAMISGYVETGNYK 177
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
EA LF M + ++ P E ++ A R+G E
Sbjct: 178 EALELFKEMMKT-NVRPDESTMVTVISASARSGSIE 212
>gi|326531932|dbj|BAK01342.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 414
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 185/404 (45%), Gaps = 56/404 (13%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+L+ + ++ + ++Q D +I I+ + N + + A +
Sbjct: 16 WNILIAGSVHNGYFDRALRIFRQMQSVLIKPDYITILSIIPAFANLVAAWKVREIHACIF 75
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
L + N LIN S+ G + A F +N++SW II A + HG P++ +D
Sbjct: 76 HHNLEMDGKIANALINAYSKSGDLAGACAVFDRHSSRNTISWNCIIVAHLLHGSPTKVVD 135
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
F + + + T + +KAY + G+V E +FL+M++ Y++ P +HY+ MV+ L
Sbjct: 136 YFFKMKQQGVLPDHATLTAVIKAYGMEGMVSEGREVFLNMDKDYNVTPDLDHYAAMVDLL 195
Query: 194 GRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
GR+G +E I + L P +W +LL S+R+HG+++LA A ++ ++P
Sbjct: 196 GRSGRLQEAYALIDEM---PLTPNLTLWESLLTSARMHGNVRLALLAATEMSMIEPNDPI 252
Query: 248 ------------------------------GMYVGCWIEIQNKIYEFVSNEELTSEVSDK 277
G C EI+N +Y F + +++ SE D
Sbjct: 253 IQVVVSNLQDLAGKSFDVPKVTVHGKERMLGGVESCSTEIRNMVYLFSTGDKVASE--DV 310
Query: 278 LAEIEENMKELGFVL----NRSLYQTKMK-----------AVALGLISFPHGMPTRVIKS 322
AE++ M + G + N +L + K A+ G+ + P R+IK+
Sbjct: 311 AAELKLMMVQTGLSMLSAGNGALEVEEEKEEVAGLHCEKLAIIAGISNSPPFRSIRIIKT 370
Query: 323 VGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
MC + H+ + +S R++++KDP H F++G CSC+D +
Sbjct: 371 ARMCNHCHTFAKLVSEKYGRQILIKDPKYLHKFENGNCSCEDYW 414
>gi|357490817|ref|XP_003615696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517031|gb|AES98654.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 887
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/397 (27%), Positives = 176/397 (44%), Gaps = 47/397 (11%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN L+ +++ + ++ +Q C +S +I IL C N + + +
Sbjct: 494 WNSLISGFVQSGQKDKALQIFRNMQFCHILPNSVTILSILPVCANLVASKKVKEIHCFAV 553
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+R L+S +V N LI+ ++ G + + F K+++SW ++S+ V HG ALD
Sbjct: 554 RRILVSELSVSNLLIDSYAKSGNLMYSKNIFNELSWKDAVSWNSMLSSYVLHGCSESALD 613
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF + + N TF S L AY G+V E +F + + Y + EHYS MV L
Sbjct: 614 LFYQMRKQGLQPNRGTFASILLAYGHAGMVDEGKSVFSCITKDYLVRQGMEHYSAMVYLL 673
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG----- 248
GR+G E L+FI+ + P + +W LL + R+H + +A A ++LE +PG
Sbjct: 674 GRSGKLAEALDFIQSM-PIEPNSSVWGALLTACRIHRNFGVAVLAGKRMLEFEPGNNITR 732
Query: 249 -----MYVGC------------------WIEIQNKIYEFVSNEELTSEVSDK----LAEI 281
Y C WIE N ++ FV ++ ++ DK L +
Sbjct: 733 HLLSQAYSLCGKFEPEGEKAVNKPIGQSWIERNNVVHTFVVGDQ-SNPYLDKLHSWLKRV 791
Query: 282 EENMKE----------LGFVLNRSLYQTKMKAVALGLISFPHGMPT--RVIKSVGMCGYS 329
N+K N S ++ A A LI PH P R++K + MC
Sbjct: 792 AVNVKTHVSDNELYIEEEEKENTSSVHSEKLAFAFALID-PHNKPQILRIVKKLRMCRDC 850
Query: 330 HSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
H +++S E+ + D HHFK G CSC+D +
Sbjct: 851 HDTAKYISMAYGCEIYLSDSNCLHHFKGGHCSCRDYW 887
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 67/148 (45%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L++G + + K L+ + VGN LI++ +CG + A F E++ SW II
Sbjct: 370 LSMGLEIHSIAVKMNLVDNVLVGNSLIDMYCKCGDLKAAQHIFDMMSERDVYSWNSIIGG 429
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
G +A +LF Q + N T+ + Y G +A LF S+E+ +
Sbjct: 430 YFQAGFCGKAHELFMKMQESDSPPNIITWNIMITGYMQSGAEDQALDLFKSIEKDGKTKR 489
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGI 209
+ ++ ++ ++G ++ L+ + +
Sbjct: 490 NAASWNSLISGFVQSGQKDKALQIFRNM 517
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 80/194 (41%), Gaps = 1/194 (0%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W+ ++ C + K + V L + D + + +L +C L G + +
Sbjct: 151 WSAMIGGCSRNKSWGEVVGLFYAMMRDGVLPDEFLLPKVLQACGKCRDLETGRLIHSMVI 210
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+RG+ + N ++ + ++CG++D A F E++S++W +IS +G +A
Sbjct: 211 RRGMRWSKHLRNSIMAVYAKCGEMDCAKKIFDCMDERDSVAWNAMISGFCQNGEIGQAQK 270
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
F Q + T+ + Y +G A L M E + I P ++ M+
Sbjct: 271 YFDAMQKDGVEPSLVTWNILISCYNQLGHCDLAIDLMRKM-EWFGIAPDVYTWTSMISGF 329
Query: 194 GRAGMFEEVLEFIK 207
+ G L+ +K
Sbjct: 330 TQKGRISHALDLLK 343
>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 684
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/410 (25%), Positives = 183/410 (44%), Gaps = 56/410 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN + C++ +E+ +L ++Q + +I L C N L G +
Sbjct: 277 QASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHG 336
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ + I + L+ + ++CG ++ + F + P K+ ++W +I A HG E
Sbjct: 337 YVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGE 396
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
+L LF N TF L + L E +F SM + I P +HYS MV
Sbjct: 397 SLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMV 456
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ L RAG EE +FI+ + P + W LL + RV+ +++L A +L E++P
Sbjct: 457 DVLSRAGRLEEAYDFIRKM-PIEPTAAAWGALLGACRVYKNVELGTLAASQLFEIEPDNA 515
Query: 248 GMYV--------------------------------GCWIEIQNKIYEFVSNEELTSEVS 275
G YV W++++NK+Y FV+ ++ ++E
Sbjct: 516 GNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSWVQVKNKVYSFVTGDK-SNEQK 574
Query: 276 DK----LAEIEENMKELGFVLNRSLY---------------QTKMKAVALGLISFPHGMP 316
D L EI+E M+ G+ N ++ AVA G+++
Sbjct: 575 DMIYRFLDEIDEKMRLDGYQPNTDFVLQNVDQEQREETLCSHSERLAVAFGILNSSGKTT 634
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV K++ +CG H+A + ++ I+ +++V+D FHHF+DG C+C D +
Sbjct: 635 VRVFKNLRICGDCHNAIKLIAKIVGMQIIVRDSLRFHHFRDGYCTCNDFW 684
>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Glycine max]
Length = 882
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/377 (28%), Positives = 178/377 (47%), Gaps = 55/377 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S ++ +L++C L G + A+ + G+ + N ++++ RCG+++ A F
Sbjct: 508 NSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQF 567
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
S + + SW +++ G + A +LF+ S N TF S L A + G+V
Sbjct: 568 FSVDHEVT-SWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVA 626
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E F SM+ Y I P+ +HY+ +V+ LGR+G EE EFI+ + P K P +W LL
Sbjct: 627 EGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKM-PMKPDPAVWGALLN 685
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
S R+H ++L + A + + + D G Y+
Sbjct: 686 SCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIVD 745
Query: 252 -GC-WIEIQNKIYEFVSNEELTSEVSDKLAEIE---ENMKELGFVLNRSLYQTKMK---- 302
GC W+E++ ++ F+S++ ++ + A +E + MKE G S + M+
Sbjct: 746 PGCSWVEVKGTVHAFLSSDNFHPQIKEINALLERFYKKMKEAGVEGPESSHMDIMEASKA 805
Query: 303 ----------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
A+ GLI+ GMP V K++ MC H+ +F+S + RE+ V+D F
Sbjct: 806 DIFCGHSERLAIVFGLINSGPGMPIWVTKNLYMCQSCHNIVKFISREVRREISVRDAEQF 865
Query: 353 HHFKDGKCSCKD-AYGS 368
HHFK G CSC D AY S
Sbjct: 866 HHFKGGICSCTDEAYRS 882
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +I +L++C L++G ++GL+S+ V N LI++ ++C ID A F
Sbjct: 408 DEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIF 467
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
ST EKN +SWT II + EAL F++ R N T L A A +G
Sbjct: 468 HSTLEKNIVSWTSIILGLRINNRCFEALFFFRE-MIRRLKPNSVTLVCVLSACARIG 523
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+L+ KA ++ +L R+ D Y+ +L +C L G + ++
Sbjct: 175 WNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVI 234
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ G S V N LI + +CG ++ A L F P ++ +SW +IS +G E L
Sbjct: 235 RYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLR 294
Query: 134 LF 135
LF
Sbjct: 295 LF 296
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
+G Q Y+ + P++ N LI + S G I++A+ F T ++ +SWT +IS
Sbjct: 326 LGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYE 385
Query: 124 NHGHPSEALDLFK 136
N P +AL+ +K
Sbjct: 386 NCLMPQKALETYK 398
>gi|357141490|ref|XP_003572243.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Brachypodium distachyon]
Length = 884
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/412 (25%), Positives = 187/412 (45%), Gaps = 59/412 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGTQAQ 69
+ WN+L+ + K + L + ++ + D + +L +C + L+ G Q
Sbjct: 475 VAWNVLITCYARNKRTKDTLWLFDEMRRGESEVKPDEVTCILLLQACTSLGALDFGEQIW 534
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
Y + G V N +I + +RCG ++ A F TP+K+ ++W+ +I +G
Sbjct: 535 EYAVEHGYGCELKVRNSVITMYTRCGCVEKAYQVFCHTPQKSVVTWSAMIMGLAANGFGE 594
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
+A+ F++ + TF L A + GLV E +R F M Y + P+ HY +
Sbjct: 595 DAISAFEEMSRSGVVPDGQTFTGVLSACSHSGLVDEGFRFFDMMRYEYKMMPNVRHYGCI 654
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLEL-- 245
V+ +GRAG+ +E E + + K+ P IWRTLL + R+HG + L + + L+EL
Sbjct: 655 VDLMGRAGLLDEAYELV--VKEMKVAPDATIWRTLLGACRIHGHVDLGEKVISHLIELKA 712
Query: 246 -DPGMYV---------GCW-----------------------IEIQNKIYEFVSNEE--- 269
G YV G W +E+ +++EF++++
Sbjct: 713 QQAGDYVLLLNTYAAAGDWEKVAEVRKLMRENEIQTTPGCTTVELNGELHEFIADDASHP 772
Query: 270 LTSEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHG 314
+E+ KL EI +++ G+V + S Y ++ A+A L+ P
Sbjct: 773 RKAEIYGKLDEINRHLRIAGYVPHVSSDLHDLDSEGKECALTYHSEKLAIAFALLVMPQR 832
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P R+ K++ +C H+ + S + R ++V+D FHHF G+CSC D +
Sbjct: 833 RPIRLAKNLRVCVDCHNFTKVFSGVYNRLVIVRDRTRFHHFNGGQCSCNDYW 884
>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 685
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 174/375 (46%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +SI L+SC + L++G + + + +++ + N LI++ ++CG + F
Sbjct: 312 DQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVF 371
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
K EK+ + IS +GH + +F + S + +TF L GL+
Sbjct: 372 KEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQ 431
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ R F ++ VY ++ + EHY MV+ GRAGM ++ I + P + ++W LL
Sbjct: 432 DGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDM-PMRPNAIVWGALLS 490
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYVG----------------------------- 252
R+ D +LA+ L +L+ L+P G YV
Sbjct: 491 GCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKI 550
Query: 253 ---CWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL---------- 296
WIE++ ++EF+++++ L+ ++ KL ++ M+ +GFV
Sbjct: 551 PGYSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEEK 610
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ ++ AVA GLIS HG RV+K++ +CG H + +S I RE+VV+D
Sbjct: 611 ERVLGHHSEKLAVAFGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNR 670
Query: 352 FHHFKDGKCSCKDAY 366
FH F +G CSC D +
Sbjct: 671 FHCFTNGSCSCNDYW 685
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 60/124 (48%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L A + +L +++ DSY I +L++C++ L+ G +
Sbjct: 178 VTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKH 237
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M + + + V L+N+ ++CGK++ A F S EK+ ++W+ +I ++ P E
Sbjct: 238 MEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEG 297
Query: 132 LDLF 135
++ F
Sbjct: 298 IEFF 301
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 4/135 (2%)
Query: 6 LISDVEIP----WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL 61
L S + P +N L+ + + +L I+ + ++ +L +C
Sbjct: 67 LFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASN 126
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
+G + + K G A L++I S G+++DA F+ PE++ ++WT + S
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSG 186
Query: 122 RVNHGHPSEALDLFK 136
G EA+DLFK
Sbjct: 187 YTTAGKHREAIDLFK 201
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 178/405 (43%), Gaps = 85/405 (20%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERI---------QLCCGFI------------------ 44
+ WN+++ IK D+E ++L R+ + G++
Sbjct: 195 VTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEA 254
Query: 45 ----DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDA 100
+ ++ +L +C + L++G + Y + G + + N LI++ +CG +++A
Sbjct: 255 GVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEA 314
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
F+ E+ +SW+ +I HG EAL LF D N TF L A + M
Sbjct: 315 CKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHM 374
Query: 161 GLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWR 220
GL+ E R F SM Y I P EHY MV+ L RAG+ E EFI + P K ++W
Sbjct: 375 GLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNM-PMKPNGVVWG 433
Query: 221 TLLLSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW-------------- 254
LL + RVH ++++A+ A+ LLELDP G YV G W
Sbjct: 434 ALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQ 493
Query: 255 ---------IEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVLNRSLY----- 297
I + ++EFV+ EE T ++ + E+ E M+ G+V N S+
Sbjct: 494 VKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIE 553
Query: 298 ----------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSA 332
++ A+ GL++ P P R++K++ +C HSA
Sbjct: 554 EGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSA 598
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 14 WNLLLKACIKAK---DYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
WN LKA + D M+ L + +C D+++ +L +CLN + L+ G
Sbjct: 96 WNSCLKALAEGDSPIDAIMLFYRLRQYDVC---PDTFTCSSVLRACLNLLDLSNGRILHG 152
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K G S+ + N ++++ + CG++ +A L F+ P+++ ++W +I+ + G
Sbjct: 153 VVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEG 212
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175
A DLF R N ++ S + Y G EA LF MEE
Sbjct: 213 AYDLFS----RMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEE 253
>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14330-like [Glycine max]
Length = 650
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 180/374 (48%), Gaps = 57/374 (15%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ +L C L+ G + + K + + N L+++ ++CG+I + F
Sbjct: 279 TLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPLLNSLMDMYAKCGEIGYCEKVFDRM 338
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY-TSMNPTTFRSALKAYALMGLVGEA 166
K+ SW +++ +G EAL LF D+ RY N TF + L + GL E
Sbjct: 339 HSKDLTSWNTMLAGFSINGQIHEALCLF-DEMIRYGIEPNGITFVALLSGCSHSGLTSEG 397
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226
RLF ++ + + ++PS EHY+ +V+ LGR+G F+E L + I P + IW +LL S
Sbjct: 398 KRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVAENI-PMRPSGSIWGSLLNSC 456
Query: 227 RVHGDMKLAKYALDKLLEL---DPGMYV-------------------------------G 252
R++G++ LA+ ++L E+ +PG YV G
Sbjct: 457 RLYGNVALAEVVAERLFEIEPNNPGNYVMLSNIYANAGMWEDVKRVREMMALTGMKKDAG 516
Query: 253 C-WIEIQNKIYEFV----SNEELTSEVSDKLAEIEENMKELGFVLNRSLY----QTKMKA 303
C WI+I++KI+ FV S+ ++E E+ +K LG+V N + +MKA
Sbjct: 517 CSWIQIKHKIHTFVAGGSSDFRCSAEYKKIWNELSNAVKNLGYVPNTGVVLHDINEEMKA 576
Query: 304 V-----------ALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
V LI+ GMP R+ K++ +C HS + +S + R +V++D F
Sbjct: 577 VWVCEHSERLAAVFALINTGAGMPIRITKNLRVCVDCHSWMKAVSKVTRRLIVLRDTNRF 636
Query: 353 HHFKDGKCSCKDAY 366
HHF++G CSCKD +
Sbjct: 637 HHFENGSCSCKDYW 650
>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
Length = 1321
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/387 (27%), Positives = 182/387 (47%), Gaps = 60/387 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERI---QLCCGFIDSYSICDILNSCLNPILLNVGTQA 68
+ WN L+ + + E E R+ + C + ++ +I +C + L Q
Sbjct: 383 VSWNALIAGYVLNEKIEKAMEAFCRMVKEDVAC---NEFTYSNIFKACSSFPSLATTVQI 439
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
+ + K + S+ V + LI ++CG +++A F + + +SW II A +G P
Sbjct: 440 HSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDP 499
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
+A+ L + TF + L A + GLV E F SM + Y I+P E H S
Sbjct: 500 WKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSC 559
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP- 247
MV+ LGRAG E L+FIK + K IWR LL + R + ++++A+Y +K+L+L+P
Sbjct: 560 MVDILGRAGQLENALDFIKKLTM-KPTASIWRPLLAACRYNSNLQMAEYVAEKILDLEPN 618
Query: 248 ---------GMYV------------------------GC-WIEIQNKIYEFVSNEELTSE 273
MY GC WIE+ NK+Y+F S+++ E
Sbjct: 619 DATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIEVNNKMYKFFSHDKAHPE 678
Query: 274 ---VSDKLAEIEENMKELGF------VLNRS---------LYQTKMKAVALGLISFPHGM 315
V +KL ++ ++++G+ VL+ LY ++ AV GL+S P G
Sbjct: 679 MPKVYEKLKQLVRQIQDIGYSPPTTTVLHPESRQPKEQLILYHSEKLAVCFGLLSLPPGK 738
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIER 342
P RV+K++ +C +S +++S I +R
Sbjct: 739 PIRVLKNLRVCLDCYSTMKYISRITDR 765
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 112/202 (55%), Gaps = 1/202 (0%)
Query: 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK 105
S +I +L +C N L G + Y G+ V + L+++ ++CG I +A + F
Sbjct: 1075 SVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFY 1134
Query: 106 STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165
PE+N+++W +I NHG+ +EA++LF + T ++ TF + L A + G+V
Sbjct: 1135 MMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVEL 1194
Query: 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS 225
LF M+E Y IEP EHY+ MV+ LGRAG E + IK + P + +W LL +
Sbjct: 1195 GESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAM-PVEPDKFVWGALLGA 1253
Query: 226 SRVHGDMKLAKYALDKLLELDP 247
R HG+++LA+ A + L EL+P
Sbjct: 1254 CRNHGNIELAEVAAEHLFELEP 1275
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ Y+ +L C + G Q A++ K +S AVGN L+ + S+CG +++A++ F
Sbjct: 213 NHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVF 272
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
+S ++N +SWT I+ HG +AL F R + + P F
Sbjct: 273 ESLRQRNIISWTASINGFYQHGDFKKALKQF--SMMRESGIEPNEF 316
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 82/206 (39%), Gaps = 7/206 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W +L AC + YE +Q + + + IL +C + G +
Sbjct: 872 WIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVIL 931
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K S + + LI + S+CG ++ A F +K+ + ++S HG EALB
Sbjct: 932 KNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALB 991
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMG---LVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
L + Q N ++ + + ++ +G +V E +RL + +EP ++ ++
Sbjct: 992 LVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTAN----GVEPDVVSWTSVI 1047
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCP 216
+ E + K ++ CP
Sbjct: 1048 SGFVQNFHNHEGFDAFKEMLDQGFCP 1073
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 12/185 (6%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS-LSWTFIISARV 123
G + K+G+ S VG +I++ S G++D+A+ FK S +SW +I+ V
Sbjct: 334 GRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYV 393
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA----YALMGLVGEAYRLFLSMEEVYHI 179
+ +A++ F + N T+ + KA +L V RL S ++
Sbjct: 394 LNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKS-----NV 448
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239
E + S ++EA + G E ++ I + + W +++ + +GD A + L
Sbjct: 449 ESNLHVASSLIEAYTQCGSLENAVQVFTQISDADV--VSWNSIIKAYSQNGDPWKAIFLL 506
Query: 240 DKLLE 244
K++E
Sbjct: 507 RKMIE 511
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/217 (17%), Positives = 90/217 (41%), Gaps = 5/217 (2%)
Query: 37 IQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGK 96
++ GF + L+ C + +G + ++ K GL S V LI++ ++CG+
Sbjct: 104 VEFGGGFPHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGE 163
Query: 97 IDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+D A + ++ + +ISA +G +A +F T N T+ + L
Sbjct: 164 VDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAV 223
Query: 157 YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP 216
+ + E +L + ++ ++ + +++ + GM EE + + +
Sbjct: 224 CGTISAIQEGKQLHAHVVKMQYLSETAVGNALLT-LYSKCGMMEEAEIVFESLRQRNI-- 280
Query: 217 LIWRTLLLSSRVHGDMK--LAKYALDKLLELDPGMYV 251
+ W + HGD K L ++++ + ++P +
Sbjct: 281 ISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFT 317
>gi|302774719|ref|XP_002970776.1| hypothetical protein SELMODRAFT_94128 [Selaginella moellendorffii]
gi|300161487|gb|EFJ28102.1| hypothetical protein SELMODRAFT_94128 [Selaginella moellendorffii]
Length = 750
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/390 (25%), Positives = 172/390 (44%), Gaps = 58/390 (14%)
Query: 33 LLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININS 92
LL+ ++ D+ S L +C + + L G + ++T +GL VGN L+++
Sbjct: 363 LLKEMESAKMVADASSCVAFLQACGSLLALEAGQEVHGWITMKGLEQDVFVGNALVDMYG 422
Query: 93 RCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRS 152
+CG +++A F + EKN SW F++ A + G+ +EA+ +F N TF S
Sbjct: 423 KCGSVEEAWAVFDNMKEKNWFSWNFMVEAYCSSGYSTEAIQVFLQMLQEGVKPNAKTFTS 482
Query: 153 ALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPG 212
L A G + E + M Y + P EHY+ V LGR+G +E E++K +
Sbjct: 483 VLVACGHAGFIREGILHLVYMSSDYDVVPIAEHYACAVGLLGRSGWVKEAEEYVKKLPDA 542
Query: 213 KLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP----------GMY------------ 250
+ +W L+ + R+HGD+ + A + LLE P G+Y
Sbjct: 543 EAS--VWDALVTACRIHGDLDRGRSAAESLLECSPHAARSYAVVAGLYDALARSDDAARV 600
Query: 251 -------------VGCWIEIQNKI-YEFVSNEELTSEVSDKLAEIE---ENMKELGFVLN 293
V I + N +EF++ + + AE+E + + + G+ +
Sbjct: 601 RETMTSKGLTEERVTSSILVGNTTCHEFITADTRHKRIQGIHAELEDLGQRIAKDGYAPD 660
Query: 294 RS----------------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMS 337
S Y ++ AV LG I P R+I++ MC H+A +FMS
Sbjct: 661 ASKLLMHERAEEQRQESLFYHSERLAVGLGAIKIRGDCPLRIIRNFRMCADCHTAIKFMS 720
Query: 338 TIIERELVVKDPGS-FHHFKDGKCSCKDAY 366
+ R ++++D S H F DG C+C+D +
Sbjct: 721 KAMGRTIILRDGSSQLHRFVDGHCACRDYW 750
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ A + + EL +++ DS ++ L++C L+ G +T
Sbjct: 243 WNAIISASFQNGQLKGSLELFWKMRRQGVRPDSLTLATALDTCAASGNLHEGRMVAELVT 302
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
GL S+ V + L+++ +CG +DDA F + + W+ +I+A HGH SEA
Sbjct: 303 VYGLQSNDLVNSSLVHMYGKCGSLDDARRVFDGMAHRGPVVWSKMIAAYSEHGHCSEAFV 362
Query: 134 LFKDKQ 139
L K+ +
Sbjct: 363 LLKEME 368
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 17/212 (8%)
Query: 49 ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP 108
+ I+ +C + L G + A++ L ++ + N L+ + +CG + DA F S
Sbjct: 14 LASIVRACGSSRDLIAGKRIHAHIADANLGNYRFLANLLVEMYGKCGSLHDARRVFDSIH 73
Query: 109 EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYR 168
N SW ++ A +G EA F+ + N + + A A G V A
Sbjct: 74 SPNIFSWNLLVVAYTQNGRLREARQCFE----KMPGKNVVCWTGLITANAQSGYVLSARG 129
Query: 169 LFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRV 228
+F M + + ++ MV L AG +V+E I+ +L + L ++
Sbjct: 130 VFEKMPQRNRVT-----WTAMVWCLVNAG---DVIE--AKIIHEQLVQMGIAEQLPLAKF 179
Query: 229 HGDMKLAKYALDK---LLELDPGMYVGCWIEI 257
M L+ +LD+ L +L P VG W +
Sbjct: 180 IVQMYLSCGSLDEARNLFDLLPSKDVGMWTAV 211
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 110/296 (37%), Gaps = 74/296 (25%)
Query: 61 LLNVGTQAQA-----YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSW 115
L+N G +A + + G+ + ++ + CG +D+A F P K+ W
Sbjct: 149 LVNAGDVIEAKIIHEQLVQMGIAEQLPLAKFIVQMYLSCGSLDEARNLFDLLPSKDVGMW 208
Query: 116 TFIISARVNHGHPSEALDLFKDKQ----------W-----------------------RY 142
T +I+A +G EA+ LF+ + W R
Sbjct: 209 TAVIAAYAKYGRWQEAIKLFETMESRTGPYSVLVWNAIISASFQNGQLKGSLELFWKMRR 268
Query: 143 TSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
+ P T +AL A G + E R+ + VY ++ ++ S +V G+ G +
Sbjct: 269 QGVRPDSLTLATALDTCAASGNLHEG-RMVAELVTVYGLQSNDLVNSSLVHMYGKCGSLD 327
Query: 201 EVLEFIKGIVPGKLCPLIWRTLLLSSRVHG----------DMKLAKYALD---------- 240
+ G+ P++W ++ + HG +M+ AK D
Sbjct: 328 DARRVFDGM--AHRGPVVWSKMIAAYSEHGHCSEAFVLLKEMESAKMVADASSCVAFLQA 385
Query: 241 --KLLELDPGMYVGCWIEIQNKIYE-FVSNEELTSEVSDKLAEIEE------NMKE 287
LL L+ G V WI ++ + FV N + ++ K +EE NMKE
Sbjct: 386 CGSLLALEAGQEVHGWITMKGLEQDVFVGNALV--DMYGKCGSVEEAWAVFDNMKE 439
>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65570-like [Glycine max]
Length = 676
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/410 (25%), Positives = 189/410 (46%), Gaps = 56/410 (13%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
++ W + ++ E+ + + C + +++ IL +C + +L VG Q A
Sbjct: 269 QVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACSSLAMLEVGEQIHA 328
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K GL + G LIN+ +CG +D A F E + ++ +I A +G E
Sbjct: 329 ITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVLTELDVVAINSMIYAYAQNGFGHE 388
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL+LF+ + N TF S L A GLV E ++F S+ ++IE + +H++ M+
Sbjct: 389 ALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFASIRNNHNIELTIDHFTCMI 448
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG-- 248
+ LGR+ EE I+ + + ++WRTLL S ++HG++++A+ + K+LEL PG
Sbjct: 449 DLLGRSRRLEEAAMLIEEVRNPDV--VLWRTLLNSCKIHGEVEMAEKVMSKILELAPGDG 506
Query: 249 --------MYVGC-------------------------WIEIQNKIYEFVSNE---ELTS 272
+Y W+++ +++ F++ + +
Sbjct: 507 GTHILLTNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSWVDVDREVHTFMAGDLSHPRSL 566
Query: 273 EVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLI-SFPHGMP 316
E+ + L + + +K LG+ N Y ++ A+A L +
Sbjct: 567 EIFEMLHGLMKKVKTLGYNPNTRFVLQDLDEEKKISSLYYHSEKLAIAYALWKTIGRTTT 626
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+ K++ +CG HS +F+S + R+++ +D FHHFK G CSCKD +
Sbjct: 627 IRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDSKRFHHFKGGLCSCKDYW 676
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ Y++ IL +C N L G + K GL S A L+ + SRC I+D+ F
Sbjct: 202 NEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIEDSIKVF 261
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL-- 162
N ++WT + V +G A+ +F++ S NP T S L+A + + +
Sbjct: 262 NQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACSSLAMLE 321
Query: 163 VGE 165
VGE
Sbjct: 322 VGE 324
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 48/90 (53%)
Query: 79 SHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDK 138
S+ +G+ LI+ +CG + +A F P ++ ++W +IS+ ++HG EA++ + +
Sbjct: 33 SYSFLGHKLIDGYIKCGSLAEARKLFDELPSRHIVTWNSMISSHISHGKSKEAVEFYGNM 92
Query: 139 QWRYTSMNPTTFRSALKAYALMGLVGEAYR 168
+ TF + KA++ +GL+ R
Sbjct: 93 LMEGVLPDAYTFSAISKAFSQLGLIRHGQR 122
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 1/140 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + I + E + + D+Y+ I + L+ G +A
Sbjct: 67 VTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQRAHGL 126
Query: 72 MTKRGL-ISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
GL + V + L+++ ++ K+ DA L F+ EK+ + +T +I HG E
Sbjct: 127 AVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGE 186
Query: 131 ALDLFKDKQWRYTSMNPTTF 150
AL +F+D R N T
Sbjct: 187 ALKIFEDMVNRGVKPNEYTL 206
>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
Length = 913
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/419 (26%), Positives = 183/419 (43%), Gaps = 65/419 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W ++ + EL R D++ + I+ + L+ G Q Y
Sbjct: 496 IQWTTVVVGHAQEGQVMEALELFRRFWRSGARADAHVLSSIVGVLADFALVEQGRQVHCY 555
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + + GN ++++ +CG D+A+ F+ P +N +SWT +I+ HG EA
Sbjct: 556 GVKSPAGTDVSAGNSIVDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREA 615
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ +F++ + + T+ + L A + GLV E R F + + P EHY+ MV+
Sbjct: 616 VAMFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVD 675
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD---PG 248
LGRAG E + I+ +P + +W+TLL + RVH D+ + + A D LL +D P
Sbjct: 676 LLGRAGELREARDLIR-TMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAIDGDNPV 734
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFV--SNEELTSEV 274
YV GC W+EI +++ F +EE +
Sbjct: 735 NYVTLSNVFAEAGAWRECHKVRDAMRRRGLKKQGGCSWVEIGKEVHFFYGGGDEEAHPQA 794
Query: 275 SD---KLAEIEENMKE-LGFVLNRSLY----------------QTKMKAVALGLI----- 309
D L ++E ++E LG+ + + ++ AV L L+
Sbjct: 795 GDIRRVLRDVETRVREQLGYCADDVQFALHDVDEESRAESLRAHSERLAVGLWLLRNGVD 854
Query: 310 --SFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
H P RV K++ +CG H + +S ++ R LVV+D FH F+ G CSCKD +
Sbjct: 855 GGGGGHRQPIRVYKNLRVCGDCHEFFKGLSAVVRRALVVRDANRFHRFEHGTCSCKDYW 913
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 49 ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP 108
I D+L + L G Q +TK G S +GN LI++ ++CG++D A F
Sbjct: 220 IADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMR 279
Query: 109 EKNSLSWTFIISARVNHGHPSEALDLFKD-KQWRYTSMNPTTFRSALKA 156
++N +SWT ++ + HG + L L + + + N T ++LKA
Sbjct: 280 DRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKA 328
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGL--ISHPAVGNCLININSRCGKIDDADL 102
D ++ +L +C G Q A M G S+ + L+++ +CG++ A
Sbjct: 426 DEFTFASLLKACGGLGAPREGAQVHAAMAASGFSTASNAILAGALVDMYVKCGRLPVAMQ 485
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWR 141
F+ KN++ WT ++ G EAL+LF+ + WR
Sbjct: 486 VFERLERKNAIQWTTVVVGHAQEGQVMEALELFR-RFWR 523
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 8/170 (4%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCC-GFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ W L+ ++ D LL ++ + Y++ L +C + G
Sbjct: 284 VSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAGVGIHG 343
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSL-SWTFIISARVNHGHPS 129
+ G H V + L+ + S+ G+I DA F L +W +IS + GH
Sbjct: 344 LCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHAGHGR 403
Query: 130 EALDLFKDKQWRYTSM------NPTTFRSALKAYALMGLVGEAYRLFLSM 173
+AL +F++ + R + TF S LKA +G E ++ +M
Sbjct: 404 DALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAM 453
>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
Length = 668
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 180/376 (47%), Gaps = 60/376 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
++ ++ +L +C + + G + + + GL + VG ++++ S+CGK++ A AF
Sbjct: 295 NAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAF 354
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ KN LSW+ +I+ HG+ EAL +F D + N TF + L A + GL+
Sbjct: 355 QKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLS 414
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTL 222
E + +M+ + IEP EHY MV+ LGRAG +E IK + K+ P +W L
Sbjct: 415 EGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEM---KVKPDAALWGAL 471
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW---------------- 254
L + R++ +++LAK ++L ELD G YV G W
Sbjct: 472 LSACRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERMRVLVKTRGIE 531
Query: 255 -------IEIQNKIYEFVSNEELTSEVSDKLAEIE---ENMKELGFVLNRS--------- 295
+E++ K + F ++ + + A +E E + + G+V N
Sbjct: 532 KPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYVPNTGSVLHDLDVE 591
Query: 296 -------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
++ K+ AVA L++ G VIK++ +C H+A + ++ + RE++++D
Sbjct: 592 ERESMLRIHSEKL-AVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKLTGREIIIRD 650
Query: 349 PGSFHHFKDGKCSCKD 364
FHHFKDG CSC D
Sbjct: 651 LKRFHHFKDGLCSCGD 666
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 117/411 (28%), Positives = 180/411 (43%), Gaps = 63/411 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + +L R+ D ++ +L++ + G +Y
Sbjct: 217 ICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSY 276
Query: 72 M-TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ R + + V L+++ +CG ++DA F K+ + W +I+ HG +
Sbjct: 277 VKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRK 336
Query: 131 ALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
AL++F Q R + PT TF L A + GLV E F SME Y I+P EHY
Sbjct: 337 ALEMFV--QLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGC 394
Query: 189 MVEALGRAGMFEEVLEFIKG--IVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE-- 244
MV+ LGRAG+ EE ++ I P ++W +LL + R+H +M L + D L+
Sbjct: 395 MVDLLGRAGLIEEAFHLVQSLTITPD---AVMWVSLLAACRLHKNMALGQRIADFLVANG 451
Query: 245 -LDPGMY---------VGCW-----------------------IEIQNKIYEFVSNE--- 268
+ GMY VG W IEI K+YEFV+ +
Sbjct: 452 LANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMSH 511
Query: 269 ELTSEVSDKLAEIEENMKELGFVLNRSLY------QTKMKA---------VALGLISFPH 313
T E+ L ++ +KE G V L TK KA VA GLIS
Sbjct: 512 PCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLAVAFGLISSRP 571
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G +++K++ C H+ + +S I R++V +D FHHF DG C+C D
Sbjct: 572 GSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCTCGD 622
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 10/175 (5%)
Query: 77 LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
++S A+ C N+ G +DDA F P K+ + W +I HG P+EAL LF+
Sbjct: 185 VVSVTAMLTCYANM----GALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFR 240
Query: 137 DKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA 196
+ T L A A +G V L ++ ++ + + +V+ +
Sbjct: 241 RMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKC 300
Query: 197 GMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL-DPGMY 250
G E+ + GI G ++W ++ +HGD ++ AL+ ++L D G++
Sbjct: 301 GSLEDAVAVFHGI--GNKDIVVWNAMINGYAMHGD---SRKALEMFVQLRDQGLW 350
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 108/420 (25%), Positives = 189/420 (45%), Gaps = 64/420 (15%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
SL + + W ++ + + E +R++ D ++ +++C
Sbjct: 241 SLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKY 300
Query: 65 GTQAQAYMTKRGLI--SHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
+A K G H +G+ LI++ S+CG +++A F S KN S++ +I
Sbjct: 301 ADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGL 360
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTT--FRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
HG EALDLF T++ P T F AL A + GLV + ++F SM + + +E
Sbjct: 361 ATHGRAQEALDLFH-YMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVE 419
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPL--IWRTLLLSSRVHGDMKLAKYA 238
P+ +HY+ MV+ LGRAG +E LE IK + + P +W LL + R+H + +A+ A
Sbjct: 420 PTRDHYTCMVDLLGRAGRLQEALELIKTM---SVEPHGGVWGALLGACRIHNNPDIAEIA 476
Query: 239 LDKLLELDP---GMYV---------GCW------------------------IEIQNKIY 262
+ L EL+P G Y+ G W ++ +++
Sbjct: 477 AEHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMH 536
Query: 263 EFVS---NEELTSEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAV 304
+F N ++ ++ DKL E+ E + LG+ + S + T+ A+
Sbjct: 537 KFFPGNLNHPMSKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKRLILIQHTEKLAL 596
Query: 305 ALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
A L++ +++K++ MC H R S + R ++++D FHHF+ G CSC D
Sbjct: 597 AFSLLTTNRDYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGACSCGD 656
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%)
Query: 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK 105
S++ +L +C + LN+G Q A + VGN +I++ +CG I A F
Sbjct: 150 SFTFSALLKACGSMGDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFD 209
Query: 106 STPEKNSLSWTFIISARVNHGHPSEALDLFK 136
PE++ +SWT +I+A G+ A DLF+
Sbjct: 210 EMPERDVISWTELIAAYARVGNMESAADLFE 240
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 98/239 (41%), Gaps = 18/239 (7%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEM---VHELLERIQLCCGFIDSYSICDILNSCLNPILLN 63
I+ V ++ LLKAC D + H R++ C ++ D+ C + +
Sbjct: 146 ITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIV--- 202
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
+ M +R +IS LI +R G ++ A F+S P K+ ++WT +++
Sbjct: 203 CARKVFDEMPERDVISWTE----LIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFA 258
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
+ P EAL+ F + + T + A A +G A R + + + PS+
Sbjct: 259 QNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRA-VQIAQKSGYSPSD 317
Query: 184 EHY--SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
S +++ + G EE + + + + +++L HG A+ ALD
Sbjct: 318 HVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNV--FSYSSMILGLATHGR---AQEALD 371
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 107/408 (26%), Positives = 184/408 (45%), Gaps = 57/408 (13%)
Query: 12 IPWNLLLKA-CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
I WN ++ I K E + L ++++ ++ +L++C + L+ G
Sbjct: 264 ISWNTMINGYAICGKPNEAL-ALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHT 322
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ + + VG L+++ ++CGKI A F + K+ L+W II+ HG+ E
Sbjct: 323 YINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKE 382
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A LFK+ + N TF + L A + G+V E +L M Y IEP EHY ++
Sbjct: 383 AQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVI 442
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ L RAG EE +E I G +P + P LL R+HG+ +L + +L+ L P
Sbjct: 443 DLLARAGFLEEAMELI-GTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHS 501
Query: 248 GMYV---------GCW-----------------------IEIQNKIYEFVSNE---ELTS 272
G Y+ W IE++ ++ FV+ + ++
Sbjct: 502 GRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESN 561
Query: 273 EVSDKLAEIEENMKE-LGFVLNRSLYQTKMK---------------AVALGLISFPHGMP 316
++ +KL EI +K +G+ + M+ A+A GL+
Sbjct: 562 KIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEA 621
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
R++K++ +C H + +S + RE++V+D FHHF+DG+CSC D
Sbjct: 622 IRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLD 669
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 86/202 (42%), Gaps = 11/202 (5%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DSY + +++ N L Q + R ++S N +I+ + ++ A + F
Sbjct: 200 DSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVS----WNAMIDGYVKHVEMGHARMVF 255
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGL 162
++ +SW +I+ G P+EAL LF Q R + PT T S L A A +G
Sbjct: 256 DRMVCRDVISWNTMINGYAICGKPNEALALF--DQMRAVGVKPTEATVVSLLSACAHLGA 313
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
+ + L + + IE + + +V+ + G + + + L W T+
Sbjct: 314 LDKGLHLHTYIND-NRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDV--LAWNTI 370
Query: 223 LLSSRVHGDMKLAKYALDKLLE 244
+ +HG++K A+ ++ E
Sbjct: 371 IAGMAIHGNVKEAQQLFKEMKE 392
>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 989
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/375 (25%), Positives = 179/375 (47%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ +++ L+ C + L G Q + + K G +S VG+ L+++ ++CG +++A+ F
Sbjct: 616 NEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALF 675
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++ +++++W II +G ++AL F+ S + TF L A + GLV
Sbjct: 676 EALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVE 735
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E F SM + I P+ +H + MV+ LGR G F+E+ +FI+ + + LIW T+L
Sbjct: 736 EGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQ-NALIWETVLG 794
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
+S++H ++ L + A +KL EL P Y+
Sbjct: 795 ASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKE 854
Query: 252 -GC-WIEIQNKIYEFVSNEELTSEVSD---KLAEIEENMKELGFVLNRSL---------- 296
GC W+E +++ FVS++ ++ + KL E++ + + +V
Sbjct: 855 PGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEK 914
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ ++ A+ LIS R+ K++ +C H + +S+I +E+VV+D
Sbjct: 915 KENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRR 974
Query: 352 FHHFKDGKCSCKDAY 366
FHHFK+G CSC D +
Sbjct: 975 FHHFKNGACSCNDFW 989
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 101/245 (41%), Gaps = 13/245 (5%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYE----MVHELLERIQLCCGFI-DSYSICDILNSCLNP 59
S++ I WN L Y+ + + +LE GFI + Y+ IL SC
Sbjct: 475 SMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEE-----GFIPNMYTFISILGSCSCL 529
Query: 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
++ G Q A++ K L + V LI++ ++C ++DAD+AF ++ +WT II
Sbjct: 530 FDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVII 589
Query: 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179
+ +AL+ F+ Q N T L + + + +L + + H+
Sbjct: 590 TNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHV 649
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239
S +V+ + G EE + ++ + + W T++ +G A A
Sbjct: 650 SDMFVG-SALVDMYAKCGCMEEAEALFEALI--RRDTIAWNTIICGYAQNGQGNKALTAF 706
Query: 240 DKLLE 244
+L+
Sbjct: 707 RMMLD 711
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ +++ L +C + L++G Q A K GL+ VG+ L+++ ++CG+I+ A F
Sbjct: 212 NEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMF 271
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
PE+N ++W +++ G + L LF N T + LK A
Sbjct: 272 IGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCA 325
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 65/151 (43%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
++ WN+LL + D V +L + + +++ +L C N L G +
Sbjct: 279 DVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHS 338
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K G + +G L+++ S+CG DA FK+ + + + W+ +I+ G E
Sbjct: 339 LIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEE 398
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
++ LF + T N T S L A G
Sbjct: 399 SIKLFHLMRLGDTLPNQYTICSLLSAATNTG 429
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 55/124 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ L+ + E +L ++L + Y+IC +L++ N L G A
Sbjct: 381 VVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHAC 440
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + AV N L+ + + G + D ++S +++ +SW +S + G
Sbjct: 441 VWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRP 500
Query: 132 LDLF 135
L +F
Sbjct: 501 LTIF 504
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 87 LININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN 146
L+N+ ++C A L P+++ +SWT +I V G ++++ LF++ Q N
Sbjct: 153 LVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPN 212
Query: 147 PTTFRSALKAYAL 159
T + LKA +L
Sbjct: 213 EFTLATGLKACSL 225
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 172/384 (44%), Gaps = 55/384 (14%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
E+ WN L+ + + E LL ++Q ++ + ++C + L G A
Sbjct: 255 EVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHA 314
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+M K GL +GN L+++ ++ G IDDA F + + +SW +++ HG E
Sbjct: 315 HMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKE 374
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
LD F+ N +F L A + GL+ E F M++ Y +EP HY V
Sbjct: 375 TLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFV 433
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGR G+ + FI+ + P + +W LL + R+H +M+L YA ++ ELDP
Sbjct: 434 DLLGRVGLLDRAERFIREM-PIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDS 492
Query: 248 -------GMYVGC-------------------------WIEIQNKIYEFVSNEEL---TS 272
+Y W+EI+N ++ FV+N+E
Sbjct: 493 GPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIK 552
Query: 273 EVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPT 317
E+ K EI +KE+G+V + S Y ++ A+A L++ P G P
Sbjct: 553 EIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPI 612
Query: 318 RVIKSVGMCGYSHSACRFMSTIIE 341
R+ K++ +CG H+A +F+S I E
Sbjct: 613 RIKKNIRVCGDCHAAIKFVSKIYE 636
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 16/206 (7%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ +++ +L + + L+ GTQ A+ K G S VG+ L+++ +RCG +D A LAF
Sbjct: 188 NHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAF 247
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P K+ +SW +IS G AL L Q + T+ S A A +G +
Sbjct: 248 DGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALE 307
Query: 165 E-----AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIW 219
+ A+ + ++ + I + +++ +AG ++ +V + + W
Sbjct: 308 QGKWVHAHMIKSGLKLIAFIG------NTLLDMYAKAGSIDDAKRVFDRLVKPDV--VSW 359
Query: 220 RTLLLSSRVHGDMKLAKYALDKLLEL 245
T+L HG L K LD+ ++
Sbjct: 360 NTMLTGCAQHG---LGKETLDRFEQM 382
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 77 LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
L +H + N ++N+ ++CG +DDA F P K+ ++WT +I+ + P +AL LF
Sbjct: 119 LDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFP 178
Query: 137 DKQWRYTSMNPTTFRSALKA 156
N T S LKA
Sbjct: 179 QMLRLGLQPNHFTLSSLLKA 198
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 171/379 (45%), Gaps = 54/379 (14%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
EI WN L+ ++ +E ++ R+ + ++ L++ N + G Q A
Sbjct: 512 EITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHA 571
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K G VGN LI++ +CG +DA + F E+N +SW II++ HG E
Sbjct: 572 RVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLE 631
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
ALDLF + N TF L A + +GLV E F SM + Y I P +HY+ ++
Sbjct: 632 ALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVI 691
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ GRAG + +FI+ + P ++WRTLL + +VH ++++ ++A LLEL+P
Sbjct: 692 DIFGRAGQLDRAKKFIEEM-PIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDS 750
Query: 248 GMYV--------------------------------GCWIEIQNKIYEFVSNEE---LTS 272
YV WIE++N ++ F + L
Sbjct: 751 ASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAE 810
Query: 273 EVSDKLAEIEENMKELGFVLNR---------------SLYQTKMKAVALGLISFPHGMPT 317
++ + LA I + + ++G+ + L ++ AV GL+S P MP
Sbjct: 811 QIYNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPL 870
Query: 318 RVIKSVGMCGYSHSACRFM 336
RVIK++ + Y+ F+
Sbjct: 871 RVIKNLRVEKYTSLYANFL 889
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 97/220 (44%), Gaps = 5/220 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ ++ + + + +Q C + D+ + ++ C + G Q A
Sbjct: 412 VSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHAR 471
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G ++ N L+N+ +RCG+I +A +F+ K+ ++W ++S G EA
Sbjct: 472 IYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEA 531
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L +F N TF SAL A A + + + ++ + + H +E + ++
Sbjct: 532 LKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVG-NALIS 590
Query: 192 ALGRAGMFEEV-LEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
G+ G FE+ +EF + + + W T++ S HG
Sbjct: 591 LYGKCGSFEDAKMEFSE---MSERNEVSWNTIITSCSQHG 627
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y + +L+SC L G A K G S VGN +I + RCG A+ F
Sbjct: 144 YVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCD 203
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
P ++++++ +IS GH AL++F++ Q+ S + T S L A A +G + +
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKG 263
Query: 167 YRL 169
+L
Sbjct: 264 TQL 266
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WNL+L A + D EL ++Q + ++ IL +C +++G Q +
Sbjct: 311 VLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSL 370
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G S V LI++ S+ G ++ A + EK+ +SWT +I+ V H +A
Sbjct: 371 SVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDA 430
Query: 132 LDLFKDKQ 139
L FK+ Q
Sbjct: 431 LAAFKEMQ 438
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILL 62
C + + +N L+ + E E+ E +Q D +I +L +C + L
Sbjct: 201 FCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDL 260
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
GTQ +Y+ K G+ S + L+++ +CG ++ A + F S+ N + W ++ A
Sbjct: 261 QKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAF 320
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTF 150
+++ +LF Q + + P F
Sbjct: 321 GQINDLAKSFELF--CQMQAAGIRPNQF 346
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A RGL + VGN LI++ S+ G + A F+ ++++SW ++S +G
Sbjct: 65 HAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLG 124
Query: 129 SEALDLFKDKQWRYTSMNPTTF 150
EAL L+ +Q + PT +
Sbjct: 125 EEALGLY--RQMHRAGVVPTPY 144
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 176/375 (46%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ ++++C + L Y+ + G +V N LI++ ++CG + A F
Sbjct: 353 DQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVF 412
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++ P KN +SW+ +I+A HG+ A+ LF+ + N TF L A GLV
Sbjct: 413 ENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVE 472
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E +LF SM + I P+ EHY MV+ RA + +E I+ +P +IW +L+
Sbjct: 473 EGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIE-TMPFAPNVIIWGSLMS 531
Query: 225 SSRVHGDMKLAKYALDKLLELDPGM----------------------------YVG---- 252
+ +VHG+ +L ++A +LLEL+P Y G
Sbjct: 532 ACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKE 591
Query: 253 ---CWIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVLNRS----------- 295
IEI N+++ F+ + + E+ +KL E+ +K +G+ + S
Sbjct: 592 KASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTSGILIDLEEEDK 651
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
L+ ++ AV GLIS + R++K++ +C HS + +S + + E+VV+D
Sbjct: 652 KELVLWHSEKLAVCYGLISRRNESCIRIVKNLRICEDCHSFMKLVSKVYQIEIVVRDRTR 711
Query: 352 FHHFKDGKCSCKDAY 366
FHH G CSC+D +
Sbjct: 712 FHHCSGGICSCRDYW 726
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D +S +L + N G + +K G + P + LI + + C +I DA L
Sbjct: 119 LDRFSFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLL 178
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTT 149
F ++++W II +GH +AL LF+D R + M P +
Sbjct: 179 FDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFED--MRSSDMKPDS 222
>gi|356500039|ref|XP_003518842.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15690-like [Glycine max]
Length = 591
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 172/377 (45%), Gaps = 38/377 (10%)
Query: 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRG 76
L + C + K E + + + ++ G D + + C L +A + +
Sbjct: 222 LTRLCKEGKVKEAIELMDKGVKADAGCFDL-----LFDLCGQSKSLEDAKKAHDHFLQST 276
Query: 77 LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
S + N +I + C + DA F P ++ SW ++ + + +AL LF+
Sbjct: 277 FRSDLTLNNKVIEMYGNCKSMTDARRVFDHMPNRDMGSWHLMLRGYAYNTNGDDALQLFE 336
Query: 137 DKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA 196
+ T + L A A V +A+ F SM+ Y IEP EHY +++ LG++
Sbjct: 337 QMNELGLEITSETLLAVLSACASAEDVEDAFLHFESMKSKYGIEPGVEHYMGLLDVLGQS 396
Query: 197 GMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGCWIE 256
+E EFI + P + +W L +RVHGD+ L Y + ++ LDP V I
Sbjct: 397 AYLKEAEEFIDQL-PFEPTVAVWEKLKHYARVHGDVDLEDYTEELIVSLDPSKAVANKIP 455
Query: 257 I--------------QNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRS------- 295
+N+I E+ N L + +KL + MKE G+V +
Sbjct: 456 TPPPKKYTAINMLDGRNRIIEY-KNPTLYKD-DEKLKALS-GMKETGYVPDTRYVLHDID 512
Query: 296 --------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
LY ++ A+A GLIS P P R+IK++ +CG H+A + MS I+ REL+V+
Sbjct: 513 QEAKEQALLYHSERLAIAYGLISTPPRTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVR 572
Query: 348 DPGSFHHFKDGKCSCKD 364
D FHHFKDGKCSC D
Sbjct: 573 DNKRFHHFKDGKCSCGD 589
>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 840
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 108/408 (26%), Positives = 183/408 (44%), Gaps = 89/408 (21%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W L+ + +E +L ++ +D + + + ++C ++ G Q A
Sbjct: 404 ISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHAN 463
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K S + N LI + ++CG ++DA S +N +SWT II
Sbjct: 464 FIKSSAGSLLSAENSLITMYAKCGCLEDAIRVXDSMETRNVISWTAIIVG---------- 513
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
YA GLV F SME+VY I+P+ + Y+ M++
Sbjct: 514 -------------------------YAQNGLVETGQSYFESMEKVYGIKPASDRYACMID 548
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM-- 249
LGRAG E E + + + IW++LL + RVHG+++L + A L++L+P
Sbjct: 549 LLGRAGKINEA-EHLLNRMDVEPDATIWKSLLSACRVHGNLELGERAGKNLIKLEPSNSL 607
Query: 250 -YV--------------------------------GCWIEIQNKIYEFVSNEE---LTSE 273
YV WIE++++++ F+S + L +E
Sbjct: 608 PYVLLSNMFSVAGRWEDAAHIRRAMKTMGIXQEPGYSWIEMKSQVHTFISEDRSHPLAAE 667
Query: 274 VSDKLAEIEENMKELGFVLN--------------RSL-YQTKMKAVALGLISFPHGMPTR 318
+ K+ E+ +KE G V + RSL Y ++ AVA GL++ G P R
Sbjct: 668 IYSKIDEMMILIKEAGHVPDMNFALRDMDEEAKERSLAYHSEKLAVAFGLLTVAKGAPIR 727
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +CG HSA +++S+I +R ++++D FHHF +GKCSC D +
Sbjct: 728 IFKNLRVCGDCHSAMKYISSIFKRHIILRDLNCFHHFIEGKCSCGDFW 775
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y++ +L +C LL+ G Y K L ++ V L+++ S+C + +A+ F S
Sbjct: 135 YTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFS 194
Query: 107 TPE-KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
P+ KN + WT +++ +G +A+ FK+ + + N TF S L A
Sbjct: 195 LPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTA 245
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ IL +C + G Q + G + V + L+++ ++CG + A +
Sbjct: 235 NHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMIL 294
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+ + + W +I V HG+ EAL LF R ++ T+ S LK+ A
Sbjct: 295 DTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLA 348
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N L++ S+ G++D+A F P ++ +W +ISA N G+ EA LF +
Sbjct: 41 NQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNET----PI 96
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSM 173
N T+ S + Y G E R F M
Sbjct: 97 XNSITWSSLVSGYCKNGCEVEGLRQFSQM 125
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 104/409 (25%), Positives = 182/409 (44%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L + L ++++ ++ +L++C + L+ G Y
Sbjct: 355 VSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTY 414
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + VG L+++ ++CGKI A F + K+ L+W II+ HG+ EA
Sbjct: 415 INDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEA 474
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LFK+ + N TF + L A + G+V E +L M Y IEP EHY +++
Sbjct: 475 QQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVID 534
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
L RAG EE +E I G +P + P LL R+HG+ +L + +L+ L P G
Sbjct: 535 LLARAGFLEEAMELI-GTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSG 593
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNE---ELTSE 273
Y+ W IE++ ++ FV+ + +++
Sbjct: 594 RYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNK 653
Query: 274 VSDKLAEIEENMKE-LGFVLNRSLYQTKMK---------------AVALGLISFPHGMPT 317
+ +KL EI +K +G+ + M+ A+A GL+
Sbjct: 654 IYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAI 713
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C H + +S + RE++V+D FHHF+DG+CSC D +
Sbjct: 714 RIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 762
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 110/251 (43%), Gaps = 27/251 (10%)
Query: 1 LKLCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
LCS DV + WN ++ +K EM H + ++ C + S+ N+ +N
Sbjct: 253 FNLCS-ARDV-VSWNAMIDGYVK--HVEMGHARMVFDRMVCRDVISW------NTMINGY 302
Query: 61 LLNVGTQAQAY-----MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSW 115
+ VG +A M +R L+S N ++ +CG ++DA F P ++ +SW
Sbjct: 303 AI-VGKIDEAKRLFDEMPERNLVS----WNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSW 357
Query: 116 TFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSM 173
+++ G P+EAL LF Q R + PT T S L A A +G + + L +
Sbjct: 358 NSMLACYAQCGKPNEALALF--DQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYI 415
Query: 174 EEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMK 233
+ IE + + +V+ + G + + + L W T++ +HG++K
Sbjct: 416 ND-NRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDV--LAWNTIIAGMAIHGNVK 472
Query: 234 LAKYALDKLLE 244
A+ ++ E
Sbjct: 473 EAQQLFKEMKE 483
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 171/379 (45%), Gaps = 54/379 (14%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
EI WN L+ ++ +E ++ R+ + ++ L++ N + G Q A
Sbjct: 512 EITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHA 571
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K G VGN LI++ +CG +DA + F E+N +SW II++ HG E
Sbjct: 572 RVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLE 631
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
ALDLF + N TF L A + +GLV E F SM + Y I P +HY+ ++
Sbjct: 632 ALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVI 691
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ GRAG + +FI+ + P ++WRTLL + +VH ++++ ++A LLEL+P
Sbjct: 692 DIFGRAGQLDRAKKFIEEM-PIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDS 750
Query: 248 GMYV--------------------------------GCWIEIQNKIYEFVSNEE---LTS 272
YV WIE++N ++ F + L
Sbjct: 751 ASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAE 810
Query: 273 EVSDKLAEIEENMKELGFVLNR---------------SLYQTKMKAVALGLISFPHGMPT 317
++ + LA I + + ++G+ + L ++ AV GL+S P MP
Sbjct: 811 QIYNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPL 870
Query: 318 RVIKSVGMCGYSHSACRFM 336
RVIK++ + Y+ F+
Sbjct: 871 RVIKNLRVEKYTSLYANFL 889
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 97/220 (44%), Gaps = 5/220 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ ++ + + + +Q C + D+ + ++ C + G Q A
Sbjct: 412 VSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHAR 471
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G ++ N L+N+ +RCG+I +A +F+ K+ ++W ++S G EA
Sbjct: 472 IYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEA 531
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L +F N TF SAL A A + + + ++ + + H +E + ++
Sbjct: 532 LKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVG-NALIS 590
Query: 192 ALGRAGMFEEV-LEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
G+ G FE+ +EF + + + W T++ S HG
Sbjct: 591 LYGKCGSFEDAKMEFSE---MSERNEVSWNTIITSCSQHG 627
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y + +L+SC L G A K G S VGN +I + RCG A+ F
Sbjct: 144 YVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCD 203
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
P ++++++ +IS GH AL++F++ Q+ S + T S L A A +G + +
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKG 263
Query: 167 YRL 169
+L
Sbjct: 264 TQL 266
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WNL+L A + D EL ++Q + ++ IL +C +++G Q +
Sbjct: 311 VLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSL 370
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G S V LI++ S+ G ++ A + EK+ +SWT +I+ V H +A
Sbjct: 371 SVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDA 430
Query: 132 LDLFKDKQ 139
L FK+ Q
Sbjct: 431 LAAFKEMQ 438
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILL 62
C + + +N L+ + E E+ E +Q D +I +L +C + L
Sbjct: 201 FCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDL 260
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
GTQ +Y+ K G+ S + L+++ +CG ++ A + F S+ N + W ++ A
Sbjct: 261 QKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAF 320
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTF 150
+++ +LF Q + + P F
Sbjct: 321 GQINDLAKSFELF--CQMQAAGIRPNQF 346
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A RGL + VGN LI++ S+ G + A F+ ++++SW ++S +G
Sbjct: 65 HAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLG 124
Query: 129 SEALDLFKDKQWRYTSMNPTTF 150
EAL L+ +Q + PT +
Sbjct: 125 EEALGLY--RQMHRAGVVPTPY 144
>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Brachypodium distachyon]
Length = 849
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 100/369 (27%), Positives = 171/369 (46%), Gaps = 58/369 (15%)
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
L +C + +G + + K L + + +I++ S+CG +DDA + F K++
Sbjct: 484 LVACSELPAVRLGKEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDA 543
Query: 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLF 170
+SWT +I+ +G EA+ L+ DK R M P T+ L A G++ + F
Sbjct: 544 VSWTVMITGYAVNGRGKEAVGLY-DKMGR-EGMEPDGFTYLGLLMACGHAGMLEDGLCFF 601
Query: 171 LSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
M + IE EHY+ ++ L RAG F + + ++ ++P + I ++L + +HG
Sbjct: 602 QEMRNLPKIEAKLEHYACVIGMLSRAGRFADAVALME-VMPEEPDAKILSSVLSACHMHG 660
Query: 231 DMKLAKYALDKLLELDP----------GMYVG-------------------------CWI 255
+++L K DKLLEL+P MY G WI
Sbjct: 661 EVELGKKVADKLLELEPHKAEHYVLASNMYAGSRQWDEMRKVRKMLRDAGVAKEPGCSWI 720
Query: 256 EIQNKIYEFVSNEELTSE---VSDKLAEIEENMKELGFVLNRSL---------------Y 297
+I K+Y FV+ E E V +EE ++ G+ + ++ +
Sbjct: 721 DIAGKVYSFVAGENSLPEMHKVRKMWYSLEEKIRAAGYAPDTTVMLHELEEEEKVEALRW 780
Query: 298 QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKD 357
++ +A+A GL+ RV K++ MC H+A + +S + +RE+VV+D FHHF+D
Sbjct: 781 HSEKQAIAFGLLRTAGPTKVRVFKNIRMCKDCHNAAKLISKVADREIVVRDKKRFHHFRD 840
Query: 358 GKCSCKDAY 366
G CSC D +
Sbjct: 841 GLCSCGDYW 849
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGTQAQAY 71
WN LL +A + +L R+ + D +++ L SC + G Q A
Sbjct: 33 WNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRG----DDGRQVHAV 88
Query: 72 MTKRGLI-SHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K GL P VGN L+++ RCG++DDA+ F+ +N +SW +++A + P
Sbjct: 89 AAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVAD---PRR 145
Query: 131 ALDLFKD 137
L+LF+D
Sbjct: 146 GLELFRD 152
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN L+ A + + EL + CG D +SI +L +C N L G A ++
Sbjct: 341 WNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFI 400
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
+ GL + L+++ +CG+ A + F + EK+ +SW +I+ +G P E+L
Sbjct: 401 LRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESL 460
Query: 133 DLFKDKQWRYTSMNPT 148
LF++ Q + P+
Sbjct: 461 QLFREMQSKKGGHWPS 476
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 12 IPWNLLLKACIKAK-DYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN L+ A + E+ + LE + D ++ +L C G
Sbjct: 131 VSWNALMAAVADPRRGLELFRDCLEDLGGTAA-PDEATLVTVLPMCAALAWPETGRAVHG 189
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE---KNSLSWTFIISARVNHGH 127
K G + P V N L+++ ++CG++ DA+ AF P +N +SW ++ +G
Sbjct: 190 LAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGE 249
Query: 128 PSEALDLFKDKQ 139
A L ++ Q
Sbjct: 250 AGAAFGLLREMQ 261
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGTQAQ 69
+ WN++L + + LL +Q+ + D ++ +L C L +
Sbjct: 235 VSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCSGLPELAKLRELH 294
Query: 70 AYMTKRGL-ISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A++ +RGL ++ V N LI RCG + A F K SW +I A +G
Sbjct: 295 AFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQNGEA 354
Query: 129 SEALDLFKD 137
S A++LF++
Sbjct: 355 SAAIELFRE 363
>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
Length = 1866
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 184/405 (45%), Gaps = 64/405 (15%)
Query: 4 CSLISDVE-----------IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDI 52
C L +DV + WN+++ A + +YE ++ D S +
Sbjct: 280 CGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSV 339
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
L+SC N L GT + + G + + V + LI + ++CG + DA F+ T ++N
Sbjct: 340 LHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNV 399
Query: 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS 172
+ WT II+A HGH + ++LF+ + TF S L A + G V E + F S
Sbjct: 400 VCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNS 459
Query: 173 MEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDM 232
M +V+ I P EHY+ +V+ L RAG + FI+ ++P K +W LL + R H ++
Sbjct: 460 MIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIE-LMPIKPDASVWGALLSACRNHSNL 518
Query: 233 KLAKYALDKLLEL---DPGMYV-------------------------------GC-WIEI 257
+ K KL +L +PG YV GC WI+I
Sbjct: 519 IMGKEVALKLFDLEPDNPGNYVLLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDI 578
Query: 258 QNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRSL--------------YQTK 300
+N Y F ++ E T E+ + L +++E +K+ G+V Y ++
Sbjct: 579 KNSTYVFTVHDKSHEKTKEIYEMLEKLKELVKKKGYVAETEFAINTAEEYKEQSLWYHSE 638
Query: 301 MKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELV 345
A+A GL+S P G P R+ K++ CG H+ +F S I RE++
Sbjct: 639 KIALAFGLLSLPAGAPIRIKKNLRTCGDCHTVMKFASEIFAREII 683
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 53 LNSCLN-PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE-- 109
LNS LN TQ + + L+S P + N L+N+ ++CG +D L F S P+
Sbjct: 33 LNSLLNCSRTSKHATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFSSAPDDS 92
Query: 110 KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
KN +SWT +I+ P +AL F + N TF + L A
Sbjct: 93 KNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSA 139
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQL-CCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ ++ K Y+ + + L +D S + ++C N L G Q
Sbjct: 197 VSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHG 256
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV-NHGH 127
K G+ + + N L ++ +CG +D F +T ++ ++W +I A V NH +
Sbjct: 257 VALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNY 314
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/151 (19%), Positives = 65/151 (43%), Gaps = 1/151 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ + K ++ + + Y+ +L++C + G Q +
Sbjct: 96 VSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASVHGEQMHSL 155
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G ++ V + L+++ ++C + A+ F+ P +N +SW +I + + +A
Sbjct: 156 VWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQNKLYDQA 215
Query: 132 LDLFKDKQWR-YTSMNPTTFRSALKAYALMG 161
+ FK T+++ +F S A A G
Sbjct: 216 IFFFKTLLLENLTALDEVSFSSVFSACANAG 246
>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 586
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 191/412 (46%), Gaps = 59/412 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ AC++A ++ + +R+ D + +L +C + + G Y
Sbjct: 177 VSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRY 236
Query: 72 MTKR---GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
+ G + + L+++ +CG ++DA F ++ + W +I +G+
Sbjct: 237 LETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYG 296
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
AL+LF+ + N +TF + L A G V E R+F SM++ Y I+P EHY
Sbjct: 297 ERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQD-YGIKPQREHYGC 355
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP- 247
+ + LGRAG EE E + +P + W L+ S ++H D+ + + +L+EL+P
Sbjct: 356 LADLLGRAGNVEEA-EALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIELEPY 414
Query: 248 --GMYV---------GCW-----------------------IEIQNKIYEFVSNEE---L 270
G YV G W IE+ ++EF+S + L
Sbjct: 415 DGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDTRHPL 474
Query: 271 TSEVSDKLAEIEENMKELGFVLNRSL----------------YQTKMKAVALGLISFPHG 314
T ++ L +IE ++ +G+V + S Y ++ A+A G+++ P G
Sbjct: 475 TRKIYALLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLALAFGILNIPQG 534
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+P R++K++ +C H + +S + ERE++V+D FH F+DG CSC D +
Sbjct: 535 VPIRIVKNLRVCRDCHVHSKLVSKLYEREIIVRDRHRFHVFRDGVCSCNDYW 586
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 105/373 (28%), Positives = 171/373 (45%), Gaps = 57/373 (15%)
Query: 49 ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP 108
+ IL++C + L+ G Y+ K ++ + LI++ ++CG+ID A F
Sbjct: 293 LVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLH 352
Query: 109 EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYR 168
+++ L+WT +IS HG +E L F + + T L + GLV E
Sbjct: 353 KRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLS 412
Query: 169 LFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRV 228
+F M ++ I P EHY +++ LGRAG E E IK + P + + WR LL + R+
Sbjct: 413 IFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSM-PMEPDVVAWRALLSACRI 471
Query: 229 HGDMKLAKYALDKLLELDPGMYVG------------------------------------ 252
HGD+ L + ++ + EL PG + G
Sbjct: 472 HGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGC 531
Query: 253 CWIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENM----------KELGFVLNRS---- 295
WIEI ++EF++ ++L SE++ KL E+ + K++ F LN
Sbjct: 532 SWIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNEEDKEQ 591
Query: 296 --LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
+ ++ AVA GL+S G R+ K++ C HSA + +S + RE+VV+D FH
Sbjct: 592 AVSWHSEKLAVAFGLLSTQEGT-IRITKNLRTCEDCHSAMKTISLVFNREIVVRDRSRFH 650
Query: 354 HFKDGKCSCKDAY 366
F+ G CSC D +
Sbjct: 651 TFRYGNCSCTDYW 663
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 11/195 (5%)
Query: 12 IPWNLLLKACIKAKDYE----MVHELLERIQLCCGFIDSYSICDILNSC-LNPILLNVGT 66
I WNL+++A K + + H++L + D Y+ + +C +P L G
Sbjct: 120 IIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSA--DKYTFTFVFTACSRHPTLRGYGE 177
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ K G S VGN L+N+ S ++ DA F P+++ ++WT ++ G
Sbjct: 178 NVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRG 237
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
A +LF R N ++ + Y EA + F M ++P+E
Sbjct: 238 ELVRARELFDMMPGR----NDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVL 293
Query: 187 SIMVEALGRAGMFEE 201
++ A G ++
Sbjct: 294 VSILSACAHLGALDQ 308
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 108/408 (26%), Positives = 185/408 (45%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ + + L +QL D + ++++C + L+ G AY
Sbjct: 402 VSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAY 461
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL + +G L+++ +CG +++A F EK SW +I +G +
Sbjct: 462 IRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERS 521
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LD+F + + N TF L A MGLV E F SM E + IEP+ +HY MV+
Sbjct: 522 LDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVD 581
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG+ E + I+ + P W LL + + HGD ++ + KL+EL P G
Sbjct: 582 LLGRAGLLNEAEKLIESM-PMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDG 640
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNEEL---TSE 273
+V G W IE ++EF++ ++ ++
Sbjct: 641 FHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINK 700
Query: 274 VSDKLAEIEENMKELGFVLN--------------RSLYQTKMK-AVALGLISFPHGMPTR 318
V L E+ + +K G+ + +L++ K A+A GL++ P R
Sbjct: 701 VEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIR 760
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +C H+A + +S RE+VV+D FH+FK+G CSC D +
Sbjct: 761 IMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 808
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 15/193 (7%)
Query: 14 WNLLLKACIKAKDYE---MVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
WN +++A I++ E ++++L+ + + D+Y+ ++ +C +L G +
Sbjct: 109 WNTMMRAYIQSNSAEKALLLYKLMVKNNVGP---DNYTYPLVVQACAVRLLEFGGKEIHD 165
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
++ K G S V N LIN+ + CG + DA F +P +S+SW I++ V G E
Sbjct: 166 HVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEE 225
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A +F R N S + MG V EA++LF M+E + +S ++
Sbjct: 226 AKLIFDQMPQR----NIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVS-----WSALI 276
Query: 191 EALGRAGMFEEVL 203
+ GM+EE L
Sbjct: 277 SGYEQNGMYEEAL 289
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 31/176 (17%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ L+ + YE + + +D + +L++C + ++ G
Sbjct: 270 VSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGL 329
Query: 72 MTKRGLISHPAVGNCLININS-------------------------------RCGKIDDA 100
+ + G+ S+ + N LI++ S +CG ++ A
Sbjct: 330 VIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKA 389
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
F PEK+ +SW+ +IS H SE L LF + Q + T S + A
Sbjct: 390 RALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISA 445
>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
Length = 1111
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 103/420 (24%), Positives = 190/420 (45%), Gaps = 64/420 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + + L +QL ++ S+ +L++C L+ G A +Y
Sbjct: 214 IAWNAMISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAHSY 273
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + +G L+++ ++CG +D A F EKN +W+ ++ +G +
Sbjct: 274 IERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKC 333
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF + + N TF S L+ +++G V E + F SM + IEP +HY +V+
Sbjct: 334 LKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVD 393
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
RAG E+ + I+ + P K +W +LL +SR++ +++L A K+LEL+ G
Sbjct: 394 LYARAGRLEDAVSIIQQM-PMKAHAAVWSSLLHASRMYKNLELGVLASKKMLELETSNHG 452
Query: 249 MYV-------------------------------GCWI-EIQNKIYEFVSNEE------- 269
YV GC + E+ +++EF ++
Sbjct: 453 AYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYNE 512
Query: 270 ---LTSEVSDKLA-------------EIEENMKELGFVLNRSLYQTKMKAVALGLISFPH 313
+ ++S +L +I+E KE L+ ++ A+A G++S
Sbjct: 513 IDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLH-----SEKAAIAFGIMSLKA 567
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAYGSQSRIL 373
+P R++K++ +CG H +S I RE++V+D FHHFKDG+ + SR++
Sbjct: 568 DVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGRGYLGKCFEVLSRMM 627
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 172/376 (45%), Gaps = 55/376 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + +L C + ++ + + G ++ + L+++ ++ G+++D+ F
Sbjct: 737 DQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVF 796
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+S++WT +++A HG+ +A+ F+ S + TF L A + GLV
Sbjct: 797 LEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVE 856
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E F +M + Y IEP +HYS MV+ +GR+G+ ++ IK + P + +W LL
Sbjct: 857 EGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEM-PMEPSSGVWGALLG 915
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMY--VGCW------------------ 254
+ RV+ D +L A +L EL+P +Y G W
Sbjct: 916 ACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSASGLWKDASRIRNLMKQKGLVRA 975
Query: 255 -----IEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMK-ELGF--------------V 291
IE NKI++FV + + ++ KL EI + MK ELGF V
Sbjct: 976 SGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSELGFKSRTEFVLHDVDEDV 1035
Query: 292 LNRSLYQTKMK-AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
+ Q K A+A GL+ P + K++ +CG H + +S I +R ++++D
Sbjct: 1036 KEEMINQHSEKIAMAFGLLVISPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSK 1095
Query: 351 SFHHFKDGKCSCKDAY 366
FHHF +G CSC+D +
Sbjct: 1096 RFHHFLEGSCSCRDYW 1111
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 32/196 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI-------------- 90
D+Y++ ++ +C + G Q +RG + P V LI++
Sbjct: 115 DNYTVNFLVQACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVF 174
Query: 91 NS-----------------RCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
NS RCG + A F+ PEK+ ++W +IS G EAL+
Sbjct: 175 NSVSYPDFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALN 234
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF Q +N + S L A +G + + R S E I+ + + +V+
Sbjct: 235 LFHLMQLEGVKVNGVSMISVLSACTQLGALDQG-RWAHSYIERNKIKITVRLGTTLVDLY 293
Query: 194 GRAGMFEEVLEFIKGI 209
+ G ++ +E G+
Sbjct: 294 AKCGDMDKAMEVFWGM 309
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 50/112 (44%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
++++C++ G + K G++ V N L+N+ + G + + F+ KN
Sbjct: 643 MISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKN 702
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
+SW +I + +G E L F +W + TF + L+ +G+V
Sbjct: 703 LVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVV 754
>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 866
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 169/356 (47%), Gaps = 56/356 (15%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G + A++ + G+ + N L+++ RCG+++ A F S +K+ SW +++
Sbjct: 514 LMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFNSQ-KKDVSSWNILLTG 572
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
G S ++LF + TF S L +V + F MEE Y + P
Sbjct: 573 YSERGQGSVVVELFDRMVKARVRPDEITFISLLCGCGKSQMVRQGLMYFSKMEE-YGVTP 631
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
+ +HY+ +V+ LGRAG +E +FI+ + P P +W LL + R+H ++ L + + +
Sbjct: 632 NLKHYACVVDLLGRAGELQEAHKFIQKM-PVTPDPAVWGALLNACRIHHNIDLGELSAQR 690
Query: 242 LLELDPG----------MYVGC-------------------------WIEIQNKIYEFVS 266
+ ELD G +Y C W+E++ K++ F+S
Sbjct: 691 IFELDKGSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLS 750
Query: 267 NEEL---TSEVSDKLAEIEENMKELGFVL---NRSLYQTKM------------KAVALGL 308
+++ T E++ L E M E+G + S+ +T++ KA+A GL
Sbjct: 751 DDKYHPQTKEINTVLDGFYEKMSEVGLTTSSESSSMDETEISRDEIFCGHSERKAIAFGL 810
Query: 309 ISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
I+ GMP V K++ MC H +F+S + RE+ V+D FHHFKDG+CSC D
Sbjct: 811 INSVPGMPIWVTKNLNMCESCHDTVKFISKTVRREISVRDSEHFHHFKDGECSCGD 866
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L++C L+ G + K LIS+ V N LIN+ S+C ID A F
Sbjct: 397 DEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIF 456
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
+ P KN +SWT II+ + EAL F+
Sbjct: 457 HNIPRKNVISWTSIIAGLRLNNRCFEALIFFR 488
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 5/151 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYM 72
WN+L+ K ++ L R+ G D Y+ +L +C L G + ++
Sbjct: 163 WNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHV 222
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
+ G V N LI + +CG + A L F P ++ +SW +IS +G E L
Sbjct: 223 VRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGL 282
Query: 133 DLFKDKQWRYTSMNPT--TFRSALKAYALMG 161
LF R S++P T S + A L+G
Sbjct: 283 KLF--FAMRGLSVDPDLMTLTSVISACELLG 311
>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
trifida]
gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
Length = 575
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 183/375 (48%), Gaps = 59/375 (15%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ +L +C + LN G + +++ ++ S+ V LI++ ++CG ID A F T
Sbjct: 204 TVASVLRACADTGALNTGERIHSFVKEKNFSSNANVSTALIDMYAKCGCIDGALEVFDET 263
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
EK+ WT II+ +HG +A++ F++ + M+ + L AY GLV E
Sbjct: 264 LEKDVYVWTAIIAGLASHGLCMKAIEFFENMKKSDVKMDERAITAVLSAYRNAGLVSEGL 323
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
F +++ + I+P+ +HY +V+ L RAG ++ EFI+ + P + ++WRTL+ +
Sbjct: 324 LFFRRLKK-HKIKPTIQHYGCVVDMLTRAGRLKDAEEFIRKM-PIEPDAVLWRTLIWGCK 381
Query: 228 VHGDMKLAKYALDKLLEL------DPGMYV---------GCW------------------ 254
+ GD++ ++ L + LEL D G YV G W
Sbjct: 382 ILGDVERSE-RLVRELELLNMDSRDTGSYVLLENVYAATGKWEEKAKTRELMYQRGLMKP 440
Query: 255 -----IEIQNKIYEFVSNEELTSE---VSDKLAEIEENMKELGF------VL-------- 292
IEI ++EF + + E V +KL ++EE ++ G+ VL
Sbjct: 441 PACSRIEIDGVVHEFTAGDSRHDEATAVYEKLEDVEERLRGEGYNPIVSEVLLEIDDDEK 500
Query: 293 -NRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
++ L+ ++ AV+ GL+ G R++K++ C HS + +S + +R+++V+D
Sbjct: 501 ASQLLHHSEKLAVSFGLVKSSPGSVIRIVKNLRSCEDCHSFMKLISKVYQRDIIVRDRIR 560
Query: 352 FHHFKDGKCSCKDAY 366
FHHF G CSC D +
Sbjct: 561 FHHFSGGNCSCGDRW 575
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 3/186 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L +C G Q + K G+ S + N LI++ S G+ + A F
Sbjct: 100 DHFTYPFVLKACSKSGHARFGKQIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVF 159
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P+++ +SWT II V++ P EA+ LF N T S L+A A G +
Sbjct: 160 DKMPDRDVVSWTSIIDGFVDNDRPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGALN 219
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
R+ ++E + + + +++ + G + LE + + +W ++
Sbjct: 220 TGERIHSFVKE-KNFSSNANVSTALIDMYAKCGCIDGALEVFDETLEKDV--YVWTAIIA 276
Query: 225 SSRVHG 230
HG
Sbjct: 277 GLASHG 282
>gi|224135801|ref|XP_002327307.1| predicted protein [Populus trichocarpa]
gi|222835677|gb|EEE74112.1| predicted protein [Populus trichocarpa]
Length = 527
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 166/372 (44%), Gaps = 61/372 (16%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L +C + + + K G + N LI+ +RCG I + F ++
Sbjct: 160 VLKACAGFVTERHALAVYSQVVKAGFEDDRVLANTLIHAYARCGSISFSKQVFDKMRSRD 219
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
+SW +I A HG EAL LF + R S T + L A + GLV E +F
Sbjct: 220 VVSWNSMIKAYALHGQAKEALHLFSEMNVRPDS---ATMVALLSACSHAGLVEEGINIFD 276
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231
SM + + P +HY+ MV+ LGRAG+ E E I + P K ++W LL S R +G+
Sbjct: 277 SMSMNHGVSPQLDHYACMVDILGRAGLLLEAGELISRM-PMKPDSVVWSALLSSCRKYGE 335
Query: 232 MKLAKYALDKLLELDPGMYVG-----------------------------------CWIE 256
+LAK A DKL EL+PG +G WIE
Sbjct: 336 TQLAKLAADKLKELEPGNSLGYVQISNIYCSGGSYNEAGLIRDEMNGSRVRKEPGLSWIE 395
Query: 257 IQNKIYEFVSNEELTSE---VSDKLAEIEENMKELGFVLNRSL---------------YQ 298
I+N+++EF S + + KL + +K +G+V SL +
Sbjct: 396 IENRVHEFASGGRRHPQREAIYAKLYSLIGQLKGVGYVPETSLALQDIEEEHKQEQLYHH 455
Query: 299 TKMKAVALGLISFPH----GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHH 354
++ A+ L+S G R++K++ +C H+ + S ++++E+VV+D FHH
Sbjct: 456 SEKLALVFALMSEGSLCCGGGVIRIVKNIRICVDCHNFMKLASDLLQKEIVVRDSNRFHH 515
Query: 355 FKDGKCSCKDAY 366
FK+ CSC D +
Sbjct: 516 FKNRMCSCNDYW 527
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
++CG +D A F +N +SWT +IS HG E LF D
Sbjct: 3 AKCGDLDRARQVFDEMGRRNVVSWTALISGYAQHGRSYECFSLFSD 48
Score = 37.7 bits (86), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 21/187 (11%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSR------CGKIDDADLAFKSTPEKNSLSWTFI 118
G Q A K GLI+ VGN LI S+ G +A F+S +N +SW +
Sbjct: 72 GKQVHALALKMGLIASVYVGNALITRYSKSCEDNFVGYGSEACRVFESMEFRNLVSWNSM 131
Query: 119 ISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEV-Y 177
I+A EAL LF+ + + TF LKA A G V E + L + + V
Sbjct: 132 IAAE------EEALLLFRQLYREGLAPDWCTFSIVLKACA--GFVTERHALAVYSQVVKA 183
Query: 178 HIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLI--WRTLLLSSRVHGDMKLA 235
E + ++ A R G + F K + + W +++ + +HG K A
Sbjct: 184 GFEDDRVLANTLIHAYARCGS----ISFSKQVFDKMRSRDVVSWNSMIKAYALHGQAKEA 239
Query: 236 KYALDKL 242
+ ++
Sbjct: 240 LHLFSEM 246
>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 623
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 108/418 (25%), Positives = 189/418 (45%), Gaps = 66/418 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQA 70
+ W L++ + A V ELL + CG ++ ++C +L++C L +G
Sbjct: 209 VAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVIGRWVHV 268
Query: 71 YMTKRGLI-------SHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
Y K+ ++ VG L+++ ++CG ID + F+ ++N ++W + S
Sbjct: 269 YALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFRLMRKRNVVTWNALFSGLA 328
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
HG +D+F + R + TF + L A + +G+V E +R F S+ + Y +EP
Sbjct: 329 MHGKGRMVIDMFPE-MVREVKPDDLTFTALLSACSHLGMVDEGWRCFHSL-QFYGLEPKV 386
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
+HY+ MV+ LGRAG EE E + +P ++ +LL S VHG +++A+ +L+
Sbjct: 387 DHYACMVDILGRAGRIEEA-EILMREMPVPPNEVVLGSLLGSCSVHGKLEIAERIKRELI 445
Query: 244 ELDPG----------MYVG-------------------------CWIEIQNKIYEFVSNE 268
++ PG MYV I + + ++ F S +
Sbjct: 446 QMSPGHTEYQILMSNMYVAEGRSDIADGLRGSLRNRGIRKIPGLSSIYVNDSVHRFSSGD 505
Query: 269 E---LTSEVSDKLAEIEENMKELGFVLNRSLY-----------------QTKMKAVALGL 308
T EV KL E+ E ++ G+V + S ++ AV GL
Sbjct: 506 RSHPRTKEVYLKLNEVIERIRSAGYVPDISGLVSPSEGDLEEKEQALCCHSEKLAVCFGL 565
Query: 309 ISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ P V K++ +C HSA + +S + +RE++++D FH FK G CSC D +
Sbjct: 566 LETKPRTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSDYW 623
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 4/130 (3%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
ID S+ + C L G Q K G ++ V N L+++ +CG + +
Sbjct: 109 IDHVSLVCLFGVCAKLEDLRFGEQGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSEVKRI 168
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F++ EK+ +SWT ++ V ++F + R N + + Y G
Sbjct: 169 FQALEEKSVVSWTVVLDTLVKWEGLKRGREVFDEMPER----NVVAWTLMVAGYLGAGFT 224
Query: 164 GEAYRLFLSM 173
E L M
Sbjct: 225 REVLELLAEM 234
>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 597
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 187/405 (46%), Gaps = 62/405 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN + C++ + + E ++ DS+++ +L++C L++G +
Sbjct: 176 VAWNAFIAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLDIGEEIYDR 235
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + + V N ++++ +CG + A + F ++N +SW+ +I +G EA
Sbjct: 236 ARKEEIECNIIVENARLDMHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEA 295
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEV--YHIEPSEEHYSIM 189
L LF Q N TF L A + GLV E R F M + ++EP +EHY+ M
Sbjct: 296 LALFTMMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVRLNDKNLEPRKEHYACM 355
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
V+ LGR+G+ EE EFIK + ++ P IW LL + VH DM L + D L+E P
Sbjct: 356 VDLLGRSGLLEEAYEFIKKM---RVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAP 412
Query: 248 --GMY----------VGCW-----------------------IEIQNKIYEF----VSNE 268
G Y G W +E KI+ F +S+
Sbjct: 413 DIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFDGKIHFFNRGDISHP 472
Query: 269 ELTSEVSDKLAEIEENMKELGFVLNRS--LYQTKMK-------------AVALGLISFPH 313
+ + + +KL EI + ++ +G+V + + +M+ A+A GLI+
Sbjct: 473 Q-SKAIYEKLDEILKKIRNMGYVPDTGSVFHDVEMEEKESSLSHHSEKLAIAFGLINGRA 531
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDG 358
G P RV+K++ C H +F+S + RE++++D FHHF++G
Sbjct: 532 GHPIRVMKNLRTCDDCHVFSKFVSRLTSREIIMRDKNRFHHFRNG 576
>gi|53793521|dbj|BAD54682.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 381
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 169/382 (44%), Gaps = 65/382 (17%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGN---CLININSRCGKIDDAD 101
D ++ +L++C + L+ A AY+ S P N L+N+ RCG + A
Sbjct: 5 DHVTLLALLSACAHLGALHTARWAHAYLATT--CSFPITTNLATALLNMYMRCGDVQTAC 62
Query: 102 LAFKSTP--EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159
F STP K+ +WT +I+ +G ++AL LF + + T + L A
Sbjct: 63 SLFHSTPTRHKDVHTWTVMIAGLALNGFSTDALHLFTHMKDHNIQPDSVTLTAVLSACTH 122
Query: 160 MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIW 219
G+V E R+ M YH++P+ EHY V+ LGRAG+ EE L I+ VP K +W
Sbjct: 123 AGMVDEGKRILRRMPLDYHLQPTIEHYGCTVDLLGRAGLLEEALALIRA-VPFKADVALW 181
Query: 220 RTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGCW------------------------- 254
LL++ R H + ++ + ++L LDP + G W
Sbjct: 182 GALLVACRCHRNFEMGQMVAMEILRLDP-QHAGAWVFLSNVYAAAGKWDLVQEVRSSMKQ 240
Query: 255 -----------IEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNR--------- 294
+E+ +YEF+S + + A ++E K L ++
Sbjct: 241 HRIHKPPGSSVVELDGVVYEFLSGDHSHPQSDQIYAMLDEIGKTLSLKGHKPATKLVTFD 300
Query: 295 ----------SLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIEREL 344
S + K+ AVA GLI+ G R++K++ +C HS + +S + +R +
Sbjct: 301 IDEEDKEVCISQHSEKL-AVAFGLINTRRGAVIRIVKNLRICEDCHSVMKVVSEVYDRVI 359
Query: 345 VVKDPGSFHHFKDGKCSCKDAY 366
VV+D FHHFK G CSC D +
Sbjct: 360 VVRDRNRFHHFKSGSCSCLDYW 381
>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
Length = 611
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 170/368 (46%), Gaps = 54/368 (14%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+++ C L G A + ++ V N L+++ +CG +D+A F S K+
Sbjct: 245 VIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKD 304
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
+SW IIS+ HGH +AL L+++ + TF L A + GLV + F
Sbjct: 305 EISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFY 364
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231
M++ + I+PS H+ +++ LGR G E E + +P + + W +LL + + HGD
Sbjct: 365 RMQDDHRIKPSVPHFGCIIDLLGRGGRLAEA-ELVLKSMPIQANAVQWMSLLGACKTHGD 423
Query: 232 MKLAKYALDKLLELDP---GMYV--------------------------------GCWIE 256
+K A D++++ P G YV WIE
Sbjct: 424 LKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIE 483
Query: 257 IQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS---------------LYQ 298
I + ++EFVS + E+ +L ++ E MK LG+V + S +
Sbjct: 484 IGDVVHEFVSGDRSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLVCH 543
Query: 299 TKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDG 358
++ A+ G + P R++K++ +C H+A +FMS I R++VV+D FH F++G
Sbjct: 544 SEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFENG 603
Query: 359 KCSCKDAY 366
CSC+D +
Sbjct: 604 SCSCRDYW 611
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 8/179 (4%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
++ G + Y GL+ + VG +I++ +CG++DDA AF+ KNS++W +++
Sbjct: 47 IDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTN 106
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
G EAL+LF++ R S P F ++ A L E + E+ E
Sbjct: 107 YKLDGRDREALELFREMCERSRSARPDKFSFSIAIEACSNL--EDLEQGREIHEMLRREG 164
Query: 182 SEEHYSIMV-----EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLA 235
E H ++V + G EE + I + W ++ + HG K A
Sbjct: 165 KELHKDVVVGTALLNMYSKCGDLEEARKVFDSI-RHDADSVCWNAMIAAYAQHGRGKQA 222
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 173/358 (48%), Gaps = 54/358 (15%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L +G Y G+ +G+ LI++ S+CG I+ A + F+ P +N ++W+ +I+
Sbjct: 284 LELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMING 343
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
HG +A+D F + + + + L A + GLV E R F M V +EP
Sbjct: 344 FAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEP 403
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
EHY MV+ LGR G+ +E EFI + P K +IW+ LL + R+H ++++ K +
Sbjct: 404 RIEHYGCMVDLLGRLGLLDEAEEFILNM-PIKPDDVIWKALLGACRMHRNVEMGKRVANI 462
Query: 242 LLEL---DPGMYV-------------------------------GC-WIEIQNKIYEFVS 266
L+++ D G YV GC WI+I ++EF+
Sbjct: 463 LMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLV 522
Query: 267 NEE---LTSEVSDKLAEIEENMKELGF------VL---------NRSLYQTKMKAVALGL 308
++ E++ L EI + ++ G+ VL N Y ++ A A GL
Sbjct: 523 EDDSHPRAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENALHYHSEKMATAFGL 582
Query: 309 ISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
IS G P R++K++ +C HS+ + +S + +R++ V+D FHHF+DG CSC D +
Sbjct: 583 ISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 640
>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Glycine max]
Length = 630
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 112/411 (27%), Positives = 192/411 (46%), Gaps = 57/411 (13%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
L+ D+ I WN ++ + V E+ ++L D+ ++ ++++C N +G
Sbjct: 223 LVRDL-ITWNAMISGYAQNGHARCVLEVYSEMKLSGVSADAVTLLGVMSACANLGAQGIG 281
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ + + +RG +P + N L+N+ +RCG + A F + EK+ +SWT II H
Sbjct: 282 REVEREIERRGFGCNPFLRNALVNMYARCGNLTRAREVFDRSGEKSVVSWTAIIGGYGIH 341
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
GH AL+LF + + T F S L A + GL F ME Y ++P EH
Sbjct: 342 GHGEVALELFDEMVESAVRPDKTVFVSVLSACSHAGLTDRGLEYFKEMERKYGLQPGPEH 401
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLL 243
YS +V+ LGRAG EE + IK + K+ P +W LL + ++H + ++A+ A ++
Sbjct: 402 YSCVVDLLGRAGRLEEAVNLIKSM---KVKPDGAVWGALLGACKIHKNAEIAELAFQHVV 458
Query: 244 ELDP---GMYV--------------------------------GCWIEIQNKIYEFVSNE 268
EL+P G YV ++E + K+ F S +
Sbjct: 459 ELEPTNIGYYVLLSNIYTDANNLEGVSRVRVMMRERKLRKDPGYSYVEYKGKMNLFYSGD 518
Query: 269 ---ELTSEVSDKLAEIEENMKELG------------FVLNRSLYQTKMKAVALGLISFPH 313
T ++ L E+E +KE+ ++ ++ K+ A+A L++
Sbjct: 519 LSHPQTKQIYRMLDELESLVKEVHPPNEKCQGRSEELLIGTGVHSEKL-AIAFALLNTKS 577
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G V+K++ +C H + +S I+ R+ +V+D FHHF+DG CSCKD
Sbjct: 578 GTEITVMKNLRVCVDCHLFIKLVSKIVNRQFIVRDATRFHHFRDGICSCKD 628
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 56/121 (46%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+++ ++ +++ C L +G + G ++ AV N L+ + +CG+++ A
Sbjct: 159 VNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLAVANSLVTMYVKCGEVELARKV 218
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F ++ ++W +IS +GH L+++ + + S + T + A A +G
Sbjct: 219 FDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVSADAVTLLGVMSACANLGAQ 278
Query: 164 G 164
G
Sbjct: 279 G 279
>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
Length = 669
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 113/398 (28%), Positives = 179/398 (44%), Gaps = 54/398 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN +L + + EL R+Q D+ ++ +L SC L++G +
Sbjct: 148 ISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEV 207
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ +R + S + N L+++ + CG + +A F S ++ +SWT IISA HGH EA
Sbjct: 208 IKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREA 267
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+DLF+ + + F + L A + GL+ F SM +HI P EHY+ MV+
Sbjct: 268 IDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVD 327
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG E +FI ++P K +W LL + R+H +M + A D LL L P G
Sbjct: 328 LLGRAGCIREAYDFIM-VMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTG 386
Query: 249 MYV---------GCWIEIQN----------KIYEFVSNEELTSEVS-------------- 275
YV G W ++ K VSN EL V
Sbjct: 387 YYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKM 446
Query: 276 --DKLAEIEENMKELGF--VLNRSLYQTKMK-------------AVALGLISFPHGMPTR 318
KL+E+ ++E+G+ + +L+ + + A+A LI+ G P R
Sbjct: 447 IYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIR 506
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFK 356
+ ++ C H A + +STI RE+++KD H+ K
Sbjct: 507 ITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 544
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
SC L +G Q + + GL + V + I++ +RCG+ DDA F+ ++
Sbjct: 19 FKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDV 78
Query: 113 LSWTFIISARVNHGHPSEALDLFKD 137
+SW +IS + G A+D+F++
Sbjct: 79 VSWNAMISGFAHAGLFGRAMDVFRE 103
>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
Length = 614
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 113/398 (28%), Positives = 179/398 (44%), Gaps = 54/398 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN +L + + EL R+Q D+ ++ +L SC L++G +
Sbjct: 93 ISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEV 152
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ +R + S + N L+++ + CG + +A F S ++ +SWT IISA HGH EA
Sbjct: 153 IKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREA 212
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+DLF+ + + F + L A + GL+ F SM +HI P EHY+ MV+
Sbjct: 213 IDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVD 272
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG E +FI ++P K +W LL + R+H +M + A D LL L P G
Sbjct: 273 LLGRAGCIREAYDFIM-VMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTG 331
Query: 249 MYV---------GCWIEIQN----------KIYEFVSNEELTSEVS-------------- 275
YV G W ++ K VSN EL V
Sbjct: 332 YYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDSVHTFHIGDTSHPQSKM 391
Query: 276 --DKLAEIEENMKELGF--VLNRSLYQTKMK-------------AVALGLISFPHGMPTR 318
KL+E+ ++E+G+ + +L+ + + A+A LI+ G P R
Sbjct: 392 IYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIR 451
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFK 356
+ ++ C H A + +STI RE+++KD H+ K
Sbjct: 452 ITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 489
>gi|302768341|ref|XP_002967590.1| hypothetical protein SELMODRAFT_88697 [Selaginella moellendorffii]
gi|300164328|gb|EFJ30937.1| hypothetical protein SELMODRAFT_88697 [Selaginella moellendorffii]
Length = 620
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 170/385 (44%), Gaps = 35/385 (9%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A ++ + + L +D ++ +L++C + L + A
Sbjct: 235 VAWNAMIAAYAQSGHSRDTIRIYHVMDLEGVRVDKVTLIGVLDACASLALTSKTRLVHAR 294
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G+ +G L+N +R G + DADL F E+N +W+ +++A GHP +
Sbjct: 295 IVDTGVELDVVLGTALVNAYARGGHLVDADLVFAEMEERNVATWSAMVAAYAQTGHPDRS 354
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+++++ Q + N T+ S L A GL+ F SM Y IE EEH S +V+
Sbjct: 355 LEMYREMQLQGLRPNYITYVSILFACNHAGLLDHGLGYFASMGRDYGIESCEEHCSCIVD 414
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG--- 248
LGRAG +E E + VP +L W LL + R HGD++ + +++ G
Sbjct: 415 LLGRAGRLDEA-EALMASVPYRLGISAWMCLLGACRTHGDVERGSRVARRAFQVESGEVA 473
Query: 249 -------MYVG------------------------CWIEIQNKIYEFVSNEELTSEVSDK 277
MY G ++EI +++EF+ +E E
Sbjct: 474 PYVALSNMYAGHGMWDEVSRVRQLMANTLDKSTGKSFVEIDGRLHEFIQGDETHPEKDSI 533
Query: 278 LAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMS 337
A I E + V + ++ AVA ++ +P RV+ S+G+C H+ + +S
Sbjct: 534 QANILELELDSPTVPLFHRHHSEKVAVAFAMLKTSGEIPLRVVSSLGICHECHAFMKGIS 593
Query: 338 TIIERELVVKDPGSFHHFKDGKCSC 362
RE+VV+D H F G CSC
Sbjct: 594 KRCRREIVVRDAEMLHRFDGGSCSC 618
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 63/150 (42%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ A + +L R+ + + +L+ C L+ A++
Sbjct: 136 WNAMVAAYSRNGQMAQAVLVLRRMAVEGVRPGEGTFVGMLSWCCTVGALDEARSIHAHIL 195
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
GL S P VG L+++ RCG + A AF+ +K+ ++W +I+A GH + +
Sbjct: 196 ATGLESRPTVGTTLVSMYGRCGSLGGAVRAFQRIRDKDIVAWNAMIAAYAQSGHSRDTIR 255
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
++ ++ T L A A + L
Sbjct: 256 IYHVMDLEGVRVDKVTLIGVLDACASLALT 285
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 68/166 (40%), Gaps = 10/166 (6%)
Query: 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQ- 67
+ PWN+L+ A + L R+ C G ++ ++ +L +C N L G +
Sbjct: 23 IAFPWNILIAANAQRGQSRESIALYRRMS-CEGVKPNAITLVSVLGACANLEDLKTGREI 81
Query: 68 -------AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
A++ +R + + L+ + RCG + DA F+ ++ +W +++
Sbjct: 82 HRSHVLGARSRPYERPMPVDAVMATALVTMYGRCGSVADARAVFEGICGRDLAAWNAMVA 141
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
A +G ++A+ + + TF L +G + EA
Sbjct: 142 AYSRNGQMAQAVLVLRRMAVEGVRPGEGTFVGMLSWCCTVGALDEA 187
>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Glycine max]
Length = 629
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 103/422 (24%), Positives = 191/422 (45%), Gaps = 68/422 (16%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGF---IDSYSICDILNSCLNPILLNVGTQ 67
E+ W +L+K + + + LL+ + CGF ++S ++C +L++C ++VG
Sbjct: 210 EVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFGFGLNSITLCSVLSACSQSGDVSVGRW 269
Query: 68 AQAYMTKR-GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Y K G VG L+++ ++CG+I A + F+ P +N ++W ++ HG
Sbjct: 270 VHCYAVKAVGWDLGVMVGTSLVDMYAKCGRISAALMVFRHMPRRNVVAWNAMLCGLAMHG 329
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
+++F + TF + L + + GLV + ++ F +E Y I P EHY
Sbjct: 330 MGKVVVEMFA-CMVEEVKPDAVTFMALLSSCSHSGLVEQGWQYFHDLERAYGIRPEIEHY 388
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+ MV+ LGRAG EE + +K + P ++ +LL + HG ++L + + +L+++D
Sbjct: 389 ACMVDLLGRAGRLEEAEDLVKKL-PIPPNEVVLGSLLGACYAHGKLRLGEKIMRELVQMD 447
Query: 247 P----------GMYVGCW-------------------------IEIQNKIYEFVSNEE-- 269
P MY C I + +++ F++ ++
Sbjct: 448 PLNTEYHILLSNMYALCGKADKANSLRKVLKNRGIRKVPGMSSIYVDGQLHRFIAGDKSH 507
Query: 270 -LTSEVSDKLAEIEENMKELGFVLNRS------------------------LYQTKMKAV 304
T+++ KL ++ ++ G+V N + ++ A+
Sbjct: 508 PRTADIYMKLDDMICKLRLAGYVPNTNCQVLFGCSNGDDCMEAFEEVEQVLFTHSEKLAL 567
Query: 305 ALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
GL+S P P + K++ +C HSA + S I +RE+VV+D FH FK G CSC D
Sbjct: 568 CFGLMSTPSSSPLCIFKNLRICQDCHSAIKIASDIYKREIVVRDRYRFHSFKQGSCSCSD 627
Query: 365 AY 366
+
Sbjct: 628 YW 629
Score = 38.1 bits (87), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 4/130 (3%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D ++ L +C N+ Q + K G + H V N +++ +CG + +A
Sbjct: 111 LDGVALICALGACSKLGDSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCGLVGEARRV 170
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F+ E + +SWT ++ V +F + R N + +K Y G
Sbjct: 171 FEEIEEPSVVSWTVVLEGVVKCEGVESGKVVFDEMPER----NEVAWTVLIKGYVGSGFT 226
Query: 164 GEAYRLFLSM 173
EA+ L M
Sbjct: 227 KEAFLLLKEM 236
>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
Length = 650
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 114/409 (27%), Positives = 189/409 (46%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ + E V L + +++ + + +L+SC + + G Q A
Sbjct: 243 VAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAE 302
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G S AV + LI++ S+CG + DA AF +++ + W+ +ISA HG EA
Sbjct: 303 AIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEA 362
Query: 132 LDLFKD-KQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
++LF + +N F + L A + GL + LF M E Y +P +HY+ +V
Sbjct: 363 IELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVV 422
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG ++ I+ + P K +IW+TLL + +H + ++A+ ++L++DP
Sbjct: 423 DLLGRAGCLDQAEAIIRSM-PIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDS 481
Query: 248 GMYV--------------------------------GCWIEIQNKIYEFVSNEELTS--- 272
YV W E + ++++F + S
Sbjct: 482 ACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSK 541
Query: 273 EVSDKLAEIEENMKELGF------VLN--------RSLYQTKMK-AVALGLISFPHGMPT 317
E+ L E+ MK G+ VL+ L Q K AVA L+ P G P
Sbjct: 542 EIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPI 601
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+IK++ +C H A +++S I RE+ ++D FHHF +GKCSC D +
Sbjct: 602 RIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 68/156 (43%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ I+ + E L + D Y++ + + +++G Q Y
Sbjct: 144 WNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTI 203
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K GL V + L ++ R GK+ D ++ +S P +N ++W +I +G P L
Sbjct: 204 KYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLY 263
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
L+K + N TF + L + + + + G+ ++
Sbjct: 264 LYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQI 299
>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
Length = 810
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/399 (28%), Positives = 179/399 (44%), Gaps = 56/399 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN +L + + EL R+Q D+ ++ +L SC L++G +
Sbjct: 258 ISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEV 317
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ +R + S + N L+++ + CG + +A F S ++ +SWT IISA HGH EA
Sbjct: 318 IKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREA 377
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+DLF+ + + F + L A + GL+ F SM +HI P EHY+ MV+
Sbjct: 378 IDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVD 437
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG E +FI ++P K +W LL + R+H +M + A D LL L P G
Sbjct: 438 LLGRAGCIREAYDFIM-VMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTG 496
Query: 249 MYV---------GCWIEIQN----------KIYEFVSNEELTSEVS-------------- 275
YV G W ++ K VSN EL V
Sbjct: 497 YYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKM 556
Query: 276 --DKLAEIEENMKELGFVL----------------NRSLYQTKMKAVALGLISFPHGMPT 317
KL+E+ ++E+G+ + S++ K+ A+A LI+ G P
Sbjct: 557 IYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKL-AIAFLLINTNPGTPI 615
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFK 356
R+ ++ C H A + +STI RE+++KD H+ K
Sbjct: 616 RITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 654
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F D Y+ L SC L +G Q + + GL + V + I++ +RCG+ DDA
Sbjct: 119 FPDHYTYPLALKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQ 178
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
F+ ++ +SW +IS + G A+D+F++
Sbjct: 179 MFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRE 213
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 115/433 (26%), Positives = 195/433 (45%), Gaps = 82/433 (18%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQ-----LCCGFIDSY--------------SICDI 52
+ WN ++ +KA + E+ EL + + C ID Y +I +
Sbjct: 176 VSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSV 235
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGL-ISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
L++ + + G AY++ + +S +G+ LI++ S+CG I++A F+S +
Sbjct: 236 LSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRR 295
Query: 112 SLS-WTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF 170
++ W +IS HG EALD+F + + N TF L + GLV E F
Sbjct: 296 NIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYF 355
Query: 171 LSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
SM E Y I P +HY M++ GRAG E+ L I+ + P + L W+ +L +S HG
Sbjct: 356 ESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNM-PFEADLLAWKAILSASMKHG 414
Query: 231 DMKLAKYALDKLLELDP---GMYV---------GCWIE---------------------- 256
+++ K A + +EL P YV G W +
Sbjct: 415 HIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSM 474
Query: 257 -IQNKIYEFVSNEELTS----EVSDKLAEIEENMKELGF------------------VLN 293
+ K++EF+ +EL S +V K+AE+ +K G+ +LN
Sbjct: 475 LVNGKVHEFLLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLN 534
Query: 294 RSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
L+ KM A+A GLI P ++K++ +C H + +S + R+++++D FH
Sbjct: 535 --LHSEKM-AIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFH 591
Query: 354 HFKDGKCSCKDAY 366
HF++G CSC + +
Sbjct: 592 HFENGCCSCNEYW 604
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 29/222 (13%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
+SI +L +C + + G Q + K L P VGN ++ + G+I+ A F
Sbjct: 110 FSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDR 169
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKD-----------------KQWRYTSMNPT- 148
P ++ +SW +I+ + G A +LF + K+ + P
Sbjct: 170 MPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDG 229
Query: 149 -TFRSALKAYALMGLVGEAYRL--FLSMEEVYHIEPSEEHY-SIMVEALGRAGMFEEVLE 204
S L A A +G V E L ++SM + IE S S +++ + G E
Sbjct: 230 PAIVSVLSAIADLGFVEEGKWLHAYVSMNK---IELSSGFIGSALIDMYSKCGYIENAYH 286
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+ I + W +++ +HG LA+ ALD +E++
Sbjct: 287 VFRSISHRRNIG-DWNSMISGLAIHG---LAREALDIFVEME 324
>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
Length = 653
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/412 (26%), Positives = 187/412 (45%), Gaps = 58/412 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W L+ + + EL +++ +D + + ++ + L+ G Q A+
Sbjct: 243 ISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAF 302
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K +V N ++++ +CG I++A+ F P +N +SWT +I+ HG EA
Sbjct: 303 AIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEA 362
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF + Q T + T+ + L + GLV + F + + I+ EHY+ MV+
Sbjct: 363 IRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVD 422
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL------ 245
LGRAG +E + + P + IW+TLL + RVHGD++L K LL L
Sbjct: 423 LLGRAGRLKEAKNLVDSM-PLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPV 481
Query: 246 ----------DPGMYVGC-------------------WIEIQNKIYEFVSNEE---LTSE 273
D G + C W+EI +++ F ++ LT +
Sbjct: 482 NYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEK 541
Query: 274 VSDKLAEIEENMK-ELGFV------LNRSLYQTKM-------KAVALGLISFPHGMP--- 316
+ + L E+E MK ELG+V L+ ++KM + +A+GL G+
Sbjct: 542 IHEILKEMERRMKEELGYVYGVKYALHDVEEESKMDNLRVHSEKLAIGLALVCGGLEEGR 601
Query: 317 --TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV K++ +CG H + +S I+ VV+D FH F+DG CSC+D +
Sbjct: 602 KVIRVFKNLRVCGDCHEFIKGLSKILRVVFVVRDANRFHRFEDGLCSCRDYW 653
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 6/162 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ A E L +++Q GF+D ++ L +C + + G Q A+
Sbjct: 140 ISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAF 199
Query: 72 MTKRGLI--SHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ G + + AV LI++ +CGK+ A F EK+ +SWT +I G+ +
Sbjct: 200 LITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLA 259
Query: 130 EALDLFKDKQWRYTSMNPTTF--RSALKAYALMGLVGEAYRL 169
E+++LF +Q R +S+ F S + +A LV + ++
Sbjct: 260 ESMELF--RQLRESSIQVDGFILSSMMGVFADFALVQQGKQM 299
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 6/127 (4%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F + C +LN L++G Q K G VGN +I++ S+CG+I++A
Sbjct: 76 FSTNLKACGLLNG------LDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAAC 129
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F+ P +N +SW +I+ G +AL LF+ Q ++ TF S LKA + +G
Sbjct: 130 MFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGA 189
Query: 163 VGEAYRL 169
+ E ++
Sbjct: 190 IKEGNQI 196
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N LI + +CG++ A F ++N +SWT ++ + +G+P E+L LF
Sbjct: 11 NDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVK 70
Query: 145 MNPTTFRSALKAYALM 160
N TF + LKA L+
Sbjct: 71 PNDFTFSTNLKACGLL 86
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/409 (26%), Positives = 188/409 (45%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W ++ ++A + +L +Q D+ S+ L++C L G +Y
Sbjct: 209 ISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSY 268
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + LI++ ++CG++++A FK+ K+ WT +IS HG EA
Sbjct: 269 ANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREA 328
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F + Q N TF + L A + GLV E +F ++E Y+++P+ EHY MV+
Sbjct: 329 ISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVD 388
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG+ E FI+ + P K +IW +LL + ++H +++L + + L+E+D G
Sbjct: 389 LLGRAGLLNEANRFIQKM-PLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEMDSNHGG 447
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEELTSEVSD 276
YV GC I ++ +EF++ + +E+ +
Sbjct: 448 RYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLAGDRSHAEIQE 507
Query: 277 ---KLAEIEENMKELGFVLNRS---------------LYQTKMK-AVALGLISFPHGMPT 317
K + ++E G+V ++Q K A+ GL+ G
Sbjct: 508 IRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIVHQHSEKLAITYGLMKTKPGTTI 567
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C H +S I +R++V++D FHHFKDGKCSC D +
Sbjct: 568 RIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHFKDGKCSCGDYW 616
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 8/190 (4%)
Query: 14 WNLLLK--ACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
WNL+++ +C D ++ L R+ C ++Y+ +L +C N TQ A+
Sbjct: 78 WNLMIRGLSCSDQPDRSLL--LYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAH 135
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+TK G N LIN + G A L F E +++SW +I V G A
Sbjct: 136 ITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMA 195
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF+ + +++ TT + Y G+ EA +LF M+ ++ P + +
Sbjct: 196 LTLFRKMPEKNNAISWTTM---ISGYVQAGMNKEALQLFHEMQNS-NVPPDNVSLASALS 251
Query: 192 ALGRAGMFEE 201
A + G E+
Sbjct: 252 ACSQLGALEQ 261
>gi|357475405|ref|XP_003607988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509043|gb|AES90185.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 565
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 149/309 (48%), Gaps = 33/309 (10%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I + C + DA F P +N SW +I N E L LF+
Sbjct: 259 NKVIEMYGNCKSMTDARRVFDHMPNRNMDSWHMMIRGYANSTMGDEGLQLFEQMNELGLE 318
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
+ T + L A V +AY SM+ Y IEP EHY +++ LG++G +E E
Sbjct: 319 ITSETMLAVLSACGSAEAVEDAYIYLESMKSKYGIEPGVEHYMGLLDVLGQSGYLKEAEE 378
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGCWIEI------- 257
FI+ + P + ++ TL +R+HGD+ L + + ++ LDP V I
Sbjct: 379 FIEQL-PFEPTVTVFETLKNYARIHGDVDLEDHVEELIVSLDPSKAVANKIPTPPPKKYT 437
Query: 258 -------QNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRS--------------- 295
+N+I E+ N L + +KL + +MK+ G+V +
Sbjct: 438 AISMLDGKNRIIEY-KNPTLYKD-DEKLIAMN-SMKDAGYVPDTRYVLHDIDQEAKEQAL 494
Query: 296 LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHF 355
LY ++ A+A GLIS P P R+IK++ +CG H+A + MS I+ REL+V+D FHHF
Sbjct: 495 LYHSERLAIAYGLISTPPRTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHF 554
Query: 356 KDGKCSCKD 364
KDGKCSC D
Sbjct: 555 KDGKCSCGD 563
>gi|388508872|gb|AFK42502.1| unknown [Medicago truncatula]
Length = 565
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 149/309 (48%), Gaps = 33/309 (10%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I + C + DA F P +N SW +I N E L LF+
Sbjct: 259 NKVIEMYGNCKSMTDARRVFDHMPNRNMDSWHMMIRGYANSTMGDEGLQLFEQMNELGLE 318
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
+ T + L A V +AY SM+ Y IEP EHY +++ LG++G +E E
Sbjct: 319 ITSETMLAVLSACGSAEAVEDAYIYLESMKSKYGIEPGVEHYMGLLDVLGQSGYLKEAEE 378
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGCWIEI------- 257
FI+ + P + ++ TL +R+HGD+ L + + ++ LDP V I
Sbjct: 379 FIEQL-PFEPTVTVFETLKNYARIHGDVDLEDHVEELIVSLDPSKAVANKIPTPPPKKYT 437
Query: 258 -------QNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRS--------------- 295
+N+I E+ N L + +KL + +MK+ G+V +
Sbjct: 438 AISMLDGKNRIIEY-KNPTLYKD-DEKLIAMN-SMKDAGYVPDTRYVLHDIDQEAKEQAL 494
Query: 296 LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHF 355
LY ++ A+A GLIS P P R+IK++ +CG H+A + MS I+ REL+V+D FHHF
Sbjct: 495 LYHSERLAIAYGLISTPPRTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHF 554
Query: 356 KDGKCSCKD 364
KDGKCSC D
Sbjct: 555 KDGKCSCGD 563
>gi|414864686|tpg|DAA43243.1| TPA: hypothetical protein ZEAMMB73_488594 [Zea mays]
Length = 484
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/408 (27%), Positives = 185/408 (45%), Gaps = 55/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A I + Y+ L + + D +++ ++ + + L Q +Y
Sbjct: 79 VTWNNMIAAYIYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSLRQCRQMHSY 138
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + N ++++ +RCG I + F P K+ +SW II HG A
Sbjct: 139 IIKLGYGDSTLIMNAVMHMYARCGDIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKTA 198
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L++F + + N +TF S L A ++ GL E ++ F SM+ Y + P EHY M +
Sbjct: 199 LEMFDEMKCNGIEPNESTFVSVLTACSVSGLETEGWKEFNSMQHEYGMVPQIEHYGCMTD 258
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DPG 248
LGRAG EVL FI+ + P IW +LL +SR D+ +A+YA +++ +L + G
Sbjct: 259 LLGRAGDLREVLRFIENM-PIAPTSRIWGSLLTASRNKNDIDIAEYAAERIFQLEHNNTG 317
Query: 249 MYV---------GCWIEIQNKIYEFVSNEELTSEVSDKLAEIE----------------E 283
YV G W +++ +I + + L + L E+ E
Sbjct: 318 CYVVLSSMYADAGRWEDVE-RIRSLMKEKGLRRTEARSLVELNAEECSFVNGDMSHPQSE 376
Query: 284 NMKELGFVLNRSLYQ-----TKMK--------------------AVALGLISFPHGMPTR 318
+ EL +L+R++ + T ++ AVA GLIS G P
Sbjct: 377 KIHELSDILSRNIGEDLDSPTNLRDSDPFASGKTVLPNKHSVRLAVAFGLISSEPGTPIL 436
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V K+V +C + H A + +S R++VV D +H F DG C C D +
Sbjct: 437 VKKNVRVCNHCHRALKLISKYSRRKIVVGDTKIYHIFSDGSCCCGDYW 484
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 90/202 (44%), Gaps = 4/202 (1%)
Query: 42 GF-IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDA 100
GF +++ + ++L +C G AY+ +R + H + L+ + GK++ +
Sbjct: 7 GFQVEAVTAINLLAACGQTESSLYGRSVHAYVVRRHFLPHVVLETALLEMYGNVGKVESS 66
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
+ F EK ++W +I+A + EA+ LF + + + T + + A+ L+
Sbjct: 67 EKIFGQMTEKTVVTWNNMIAAYIYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLL 126
Query: 161 GLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWR 220
G + + ++ + ++ + + + ++M R G E + PGK + W
Sbjct: 127 GSLRQCRQMHSYIIKLGYGDSTLIMNAVM-HMYARCGDIVASREIFDKM-PGKDV-ISWN 183
Query: 221 TLLLSSRVHGDMKLAKYALDKL 242
T+++ +HG K A D++
Sbjct: 184 TIIIGYAIHGQGKTALEMFDEM 205
>gi|115480819|ref|NP_001064003.1| Os09g0573000 [Oryza sativa Japonica Group]
gi|113632236|dbj|BAF25917.1| Os09g0573000 [Oryza sativa Japonica Group]
Length = 555
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/380 (27%), Positives = 168/380 (44%), Gaps = 65/380 (17%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGN---CLININSRCGKIDDAD 101
D ++ +L++C + L+ A AY+ S P N L+N+ RCG + A
Sbjct: 179 DHVTLLALLSACAHLGALHTARWAHAYLAT--TCSFPITTNLATALLNMYMRCGDVQTAC 236
Query: 102 LAFKSTP--EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159
F STP K+ +WT +I+ +G ++AL LF + + T + L A
Sbjct: 237 SLFHSTPTRHKDVHTWTVMIAGLALNGFSTDALHLFTHMKDHNIQPDSVTLTAVLSACTH 296
Query: 160 MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIW 219
G+V E R+ M YH++P+ EHY V+ LGRAG+ EE L I+ VP K +W
Sbjct: 297 AGMVDEGKRILRRMPLDYHLQPTIEHYGCTVDLLGRAGLLEEALALIRA-VPFKADVALW 355
Query: 220 RTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGCW------------------------- 254
LL++ R H + ++ + ++L LDP + G W
Sbjct: 356 GALLVACRCHRNFEMGQMVAMEILRLDP-QHAGAWVFLSNVYAAAGKWDLVQEVRSSMKQ 414
Query: 255 -----------IEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNR--------- 294
+E+ +YEF+S + + A ++E K L ++
Sbjct: 415 HRIHKPPGSSVVELDGVVYEFLSGDHSHPQSDQIYAMLDEIGKTLSLKGHKPATKLVTFD 474
Query: 295 ----------SLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIEREL 344
S + K+ AVA GLI+ G R++K++ +C HS + +S + +R +
Sbjct: 475 IDEEDKEVCISQHSEKL-AVAFGLINTRRGAVIRIVKNLRICEDCHSVMKVVSEVYDRVI 533
Query: 345 VVKDPGSFHHFKDGKCSCKD 364
VV+D FHHFK G CSC D
Sbjct: 534 VVRDRNRFHHFKSGSCSCLD 553
>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 175/376 (46%), Gaps = 57/376 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS + +L++C +++G+ Y+ GL + +G LIN+ SRCG + A F
Sbjct: 207 DSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVF 266
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM-NPTTFRSALKAYALMGLV 163
E N +WT +ISA HG+ +A++LF + + N TF + L A A GLV
Sbjct: 267 DKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLV 326
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI-VPGK-LCPLIWRT 221
E ++ M + Y + P EH+ MV+ LGRAG +E +FI + GK P +W
Sbjct: 327 EEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTA 386
Query: 222 LLLSSRVHGDMKLAKYALDKLLELDP---------------------------GM----- 249
+L + ++H + L +L+ L+P GM
Sbjct: 387 MLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNL 446
Query: 250 --YVG-CWIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGF------VLNRS-- 295
VG IE++NK Y F +E T E+ L + KE+G+ V+++
Sbjct: 447 RKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEE 506
Query: 296 -------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
Y ++ AVA GL+ + ++K++ +C HSA +++S + R++ V+D
Sbjct: 507 EEKEFALRYHSEKLAVAFGLLKTV-DVAITIVKNLRICEDCHSAFKYISIVSNRQITVRD 565
Query: 349 PGSFHHFKDGKCSCKD 364
FHHF++G CSC D
Sbjct: 566 KLRFHHFQNGSCSCLD 581
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK 105
+Y+ ++ SC + L +G + G V L+ S+CG ++ A F
Sbjct: 107 NYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFD 166
Query: 106 STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP--TTFRSALKAYALMGLV 163
PEK+ ++W ++S +G EA+ +F Q R + P TF S L A A G V
Sbjct: 167 RMPEKSIVAWNSLVSGFEQNGLADEAIQVF--YQMRESGFEPDSATFVSLLSACAQTGAV 224
>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
Length = 563
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/409 (27%), Positives = 189/409 (46%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ + E V L + +++ + + +L+SC + + G Q A
Sbjct: 156 VAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAE 215
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G S AV + LI++ S+CG + DA AF +++ + W+ +ISA HG EA
Sbjct: 216 AIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEA 275
Query: 132 LDLFKD-KQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
++LF + +N F + L A + GL + LF M E Y +P +HY+ +V
Sbjct: 276 IELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVV 335
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG ++ I+ + P K +IW+TLL + +H + ++A+ ++L++DP
Sbjct: 336 DLLGRAGCLDQAEAIIRSM-PIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDS 394
Query: 248 GMYV--------------------------------GCWIEIQNKIYEFVSNEELTS--- 272
YV W E + ++++F + S
Sbjct: 395 ACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSK 454
Query: 273 EVSDKLAEIEENMKELGF------VLN--------RSLYQTKMK-AVALGLISFPHGMPT 317
E+ L E+ MK G+ VL+ L Q K AVA L+ P G P
Sbjct: 455 EIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPI 514
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+IK++ +C H A +++S I RE+ ++D FHHF +GKCSC D +
Sbjct: 515 RIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 563
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 68/156 (43%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ I+ + E L + D Y++ + + +++G Q Y
Sbjct: 57 WNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTI 116
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K GL V + L ++ R GK+ D ++ +S P +N ++W +I +G P L
Sbjct: 117 KYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLY 176
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
L+K + N TF + L + + + + G+ ++
Sbjct: 177 LYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQI 212
>gi|357446911|ref|XP_003593731.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482779|gb|AES63982.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 520
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 151/294 (51%), Gaps = 26/294 (8%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEM----VHELLERIQLCCGFIDSYSICDILNSCLNPI 60
+L DV + +N +++ K +Y M V+ ++R+ + I+ +C
Sbjct: 234 TLDKDV-VVFNAMIEGYSKVSEYAMRSLEVYIDMQRLNFRPNL---STFASIIGACSVLA 289
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
+G Q QA + K + +G+ LI++ S+CG++ DA F EKN SWT +I
Sbjct: 290 AFEIGEQVQAQLMKTPFFAVIKLGSALIDMYSKCGRVIDAQRVFDHMLEKNVFSWTSMID 349
Query: 121 ARVNHGHPSEALDLFKDKQWRYT-SMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179
+G P EAL+LFK Q Y+ + N TF SAL A A GLV + +F SME Y +
Sbjct: 350 GYGKNGFPDEALELFKKMQIEYSITPNFVTFLSALTACAHAGLVERGWEIFQSMESEYKL 409
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239
+P EHY+ MV+ LGRAG + EF+ + P + +W LL S R+HG++++AK A
Sbjct: 410 KPRMEHYACMVDLLGRAGWLNQAWEFVTRM-PERPNSDVWLALLSSCRIHGNIEMAKLAA 468
Query: 240 DKLLELD----PGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELG 289
++L +L+ PG YV +SN + D ++E+ E MKE G
Sbjct: 469 NELFKLNAYGRPGAYVA------------LSNTLADAGKWDNVSELREVMKEKG 510
>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
Length = 784
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 185/408 (45%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A ++ + Y+ ++ + I D+ +I +L + + G Q +Y
Sbjct: 378 VSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSY 437
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL S+ + N ++ + ++CG + A F K+ +SW +I A HG +
Sbjct: 438 IMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTS 497
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F + + + N +TF S L A ++ GL+ E + F SM+ Y I+P EHY M++
Sbjct: 498 IQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLD 557
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DPG 248
LGR G +E FI+ + P IW +LL +SR H D+ LA+ A +L L + G
Sbjct: 558 LLGRNGNLDEAKCFIEEM-PLVPTARIWGSLLAASRNHNDVVLAELAARHILSLKHDNTG 616
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNEE------L 270
YV G W ++I + F++ + L
Sbjct: 617 CYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSESFINQDRSHAHTNL 676
Query: 271 TSEVSD-KLAEIEENMKELGFVLNRSL-----------YQTKMKAVALGLISFPHGMPTR 318
+V D L +I E++ R L Y + A+ GLIS G P
Sbjct: 677 IYDVLDILLKKIGEDIYLHSLTKFRPLDVAKKRGNSPEYHSVKLAICFGLISTAIGNPVI 736
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V K+ +C H A + +S + +RE+VV D FHHF+DG CSC+D +
Sbjct: 737 VRKNTRICDDCHRAAKKISQVTKREIVVGDAKVFHHFRDGCCSCRDYW 784
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 81/191 (42%), Gaps = 13/191 (6%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ ++L SC L G + ++ + + + L+++ +CG++ A+ F
Sbjct: 310 DVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVF 369
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
EKN +SW +++A V + EAL +F+ + T S L A A +
Sbjct: 370 NQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRS 429
Query: 165 E-----AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIW 219
E +Y + L + I + +V + G + EF G+V + W
Sbjct: 430 EGKQIHSYIMKLGLGSNTFISNA------IVYMYAKCGDLQTAREFFDGMVCKDVVS--W 481
Query: 220 RTLLLSSRVHG 230
T++++ +HG
Sbjct: 482 NTMIMAYAIHG 492
Score = 37.7 bits (86), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN++++ ++ + R++ C G D+++ ++ +C + L VG + +
Sbjct: 92 WNVIIRGYTNNGLFQEAIDFYYRME-CEGIRSDNFTFPFVIKACGELLALMVGQKVHGKL 150
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K G V N LI++ + G I+ A+ F P ++ +SW ++S G +L
Sbjct: 151 IKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSL 210
Query: 133 DLFKD 137
FK+
Sbjct: 211 MCFKE 215
>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 565
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/409 (27%), Positives = 189/409 (46%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ + E V L + +++ + + +L+SC + + G Q A
Sbjct: 158 VAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAE 217
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G S AV + LI++ S+CG + DA AF +++ + W+ +ISA HG EA
Sbjct: 218 AIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEA 277
Query: 132 LDLFKD-KQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
++LF + +N F + L A + GL + LF M E Y +P +HY+ +V
Sbjct: 278 IELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVV 337
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG ++ I+ + P K +IW+TLL + +H + ++A+ ++L++DP
Sbjct: 338 DLLGRAGCLDQAEAIIRSM-PIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDS 396
Query: 248 GMYV--------------------------------GCWIEIQNKIYEFVSNEELTS--- 272
YV W E + ++++F + S
Sbjct: 397 ACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSK 456
Query: 273 EVSDKLAEIEENMKELGF------VLN--------RSLYQTKMK-AVALGLISFPHGMPT 317
E+ L E+ MK G+ VL+ L Q K AVA L+ P G P
Sbjct: 457 EIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPI 516
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+IK++ +C H A +++S I RE+ ++D FHHF +GKCSC D +
Sbjct: 517 RIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 565
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 68/156 (43%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ I+ + E L + D Y++ + + +++G Q Y
Sbjct: 59 WNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTI 118
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K GL V + L ++ R GK+ D ++ +S P +N ++W +I +G P L
Sbjct: 119 KYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLY 178
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
L+K + N TF + L + + + + G+ ++
Sbjct: 179 LYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQI 214
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 111/433 (25%), Positives = 193/433 (44%), Gaps = 76/433 (17%)
Query: 4 CSLISDV-----EIP------WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDI 52
C ++ D E+P W++++ K +E +L E ++ + + +
Sbjct: 198 CGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSV 257
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
++SC + L G +A Y+ K + + +G L+++ RCG+I+ A F+ P+K+S
Sbjct: 258 ISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDS 317
Query: 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS 172
LSW+ II HGH +A+ F S T + L A + GLV + ++ +
Sbjct: 318 LSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYEN 377
Query: 173 MEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDM 232
M+ Y IEP EHY +V+ LGRAG E FI + P K I LL + +++ +
Sbjct: 378 MKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKM-PVKPNAPILGALLGACKIYKNT 436
Query: 233 KLAKYALDKLLELDP---GMYV---------GCW-----------------------IEI 257
++A+ + L+E+ P G YV G W IEI
Sbjct: 437 EVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEI 496
Query: 258 QNKIYEFVSN---------------EELTSEV---------SDKLAEIEENMKELGFVLN 293
KI +F EE+ ++ D +++E KE
Sbjct: 497 DGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLIGYKGNTGDAFFDVDEEEKETAI--- 553
Query: 294 RSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
++ K+ A+A G++ G R++K++ +C H+A + +S + RE +V+D FH
Sbjct: 554 -HMHSEKL-AIAYGMMKTKTGTTIRIVKNLRVCEDCHTATKLISEVYGREFIVRDRNRFH 611
Query: 354 HFKDGKCSCKDAY 366
HF++G CSC+D +
Sbjct: 612 HFRNGLCSCRDYW 624
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 17/160 (10%)
Query: 93 RCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRS 152
+CG ++DA F P +N +W+ +I+ + +A+DLF+ + N T S
Sbjct: 197 KCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVS 256
Query: 153 ALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI-------MVEALGRAGMFEEVLEF 205
+ + A +G L E H + H ++ +V+ R G E+ +
Sbjct: 257 VISSCAHLGA--------LEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRV 308
Query: 206 IKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
+ + P K L W +++ VHG A + +++ L
Sbjct: 309 FEEL-PDK-DSLSWSSIIKGLAVHGHAHKAIHYFSQMVRL 346
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
VG Q + + + G + V N L+++ + CG I A F P ++ +SWT +++
Sbjct: 137 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYC 196
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174
G +A ++F + R N T+ + YA +A LF M+
Sbjct: 197 KCGMVEDAREMFDEMPHR----NLFTWSIMINGYAKNNCFEKAIDLFELMK 243
>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
Length = 670
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 171/372 (45%), Gaps = 54/372 (14%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
+ +++ C L G A + ++ V N L+++ +CG +D+A F S
Sbjct: 300 TFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSM 359
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
K+ +SW IIS+ HGH +AL L+++ + TF L A + GLV +
Sbjct: 360 KLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGL 419
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
F M++ + I+PS H+ +++ LGR G E E + +P + + W +LL + +
Sbjct: 420 DYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEA-ELVLKSMPIQANAVQWMSLLGACK 478
Query: 228 VHGDMKLAKYALDKLLELDP---GMYV--------------------------------G 252
HGD+K A D++++ P G YV
Sbjct: 479 THGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGK 538
Query: 253 CWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS-------------- 295
WIEI + ++EFVS + E+ +L ++ E MK LG+V + S
Sbjct: 539 SWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDL 598
Query: 296 -LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHH 354
+ ++ A+ G + P R++K++ +C H+A +FMS I R++VV+D FH
Sbjct: 599 LVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHL 658
Query: 355 FKDGKCSCKDAY 366
F++G CSC+D +
Sbjct: 659 FENGSCSCRDYW 670
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
++ G + Y GL+ + VG +I++ +CG++DDA AF+ KNS++W +++
Sbjct: 181 IDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTN 240
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
G EAL+LF++ + + + + AYA G +A L+ SM + + P
Sbjct: 241 YKLDGRDREALELFREMH----DADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAP 296
Query: 182 SEEHYSIMVE 191
+ + +++
Sbjct: 297 KQGTFVTVID 306
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 81 PAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
P + N LI + +CG++ A F+S P +N +WT ++A ++G SEAL F+
Sbjct: 97 PFLANLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFR 152
>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 113/426 (26%), Positives = 189/426 (44%), Gaps = 78/426 (18%)
Query: 11 EIPWNLLLKACI----KAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
E+ W +++ + + + ++ E++ R +L F+ ++ IL++C + +G
Sbjct: 219 EVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFV---TLSSILSACAQSGDVLMGR 275
Query: 67 QAQAYMTK-RGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Y K G H VG L+++ ++CG ID A FK P++N ++W ++ H
Sbjct: 276 WVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFKYLPKRNVVAWNAMLGGLAMH 335
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
G LD+F K + TF + L A + GLV + Y F S+E Y P EH
Sbjct: 336 GRGKFVLDIFP-KMIEEAKPDDLTFMAVLSACSHSGLVDQGYHYFRSLESEYGTTPKIEH 394
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLL 243
Y+ MV+ LGRAG EE + IK + +CP ++ +LL S HG ++L + L +L+
Sbjct: 395 YACMVDILGRAGHLEEAVMLIKKM---PMCPNEVVLGSLLGSCNAHGKLQLGERILQELI 451
Query: 244 ELD----------PGMYV-------------------------GCWIEIQNKIYEFVSNE 268
++D MYV I + I++F + +
Sbjct: 452 QMDGHNTEYHVLLSNMYVLEGKQDKANSLRQILKSKGIRKVPGVSSIYVGGNIHQFSAGD 511
Query: 269 E---LTSEVSDKLAEIEENMKELGFVLNRS-------------------------LYQTK 300
+ LT E+ L + + ++ G+V N + L+ K
Sbjct: 512 KSHPLTKEIYHALNNMIQRLRLAGYVPNTTNQVFPGSDGREGSSEEMEEKEQALFLHSEK 571
Query: 301 MKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKC 360
+ AV G IS G P + K++ +C HSA + +S I RE+V++D FH FK G C
Sbjct: 572 L-AVCFGHISTKPGAPLYIFKNLRICQDCHSAIKIVSKIYNREIVIRDRNRFHCFKHGSC 630
Query: 361 SCKDAY 366
SC D +
Sbjct: 631 SCSDYW 636
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 87/238 (36%), Gaps = 44/238 (18%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCG-------- 95
+D ++ + C L +G QAQ + K GL V N ++N+ +CG
Sbjct: 120 LDDVAMISVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRV 179
Query: 96 -----------------------KIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
+++ + F PE+N + WT +I+ V +G E
Sbjct: 180 FCEMNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGF 239
Query: 133 DLFKDKQWRYT-SMNPTTFRSALKAYA-----LMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
L + R+ +N T S L A A LMG Y L M HI
Sbjct: 240 LLLDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYAL-KGMGREMHIMVG---- 294
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+ +V+ + G + + K +P K + W +L +HG K K++E
Sbjct: 295 TALVDMYAKCGPIDMAFKVFK-YLP-KRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIE 350
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/415 (25%), Positives = 181/415 (43%), Gaps = 65/415 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ C++ + ++ + + Y++ L +C N + L+ G Y
Sbjct: 200 VSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVY 259
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP--EKNSLSWTFIISARVNHGHPS 129
+ K + + + LI++ ++CG+++ A F S P ++ W +I HG
Sbjct: 260 IKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSK 319
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
EA+++F+ + S N TF + L A + V E F SM Y ++P EHY +
Sbjct: 320 EAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCL 379
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
V+ LGRAG +E E I + L P IW LL + ++H D ++ + + ELDP
Sbjct: 380 VDLLGRAGRLKEAEEIISSM---HLTPDVAIWGALLSACKIHKDAEMGERVGKIVKELDP 436
Query: 248 GMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAE-----------IEEN-MKELGFVLNRS 295
++GC + + N IY N + +K+AE IE N M V +RS
Sbjct: 437 N-HLGCHVLLAN-IYSLTGNWNEARTLREKIAESGKKKTPGCSSIELNGMFHQFLVGDRS 494
Query: 296 LYQTKM--------------------------------------------KAVALGLISF 311
QTK A+A GL++
Sbjct: 495 HPQTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDNEDRETALLKHSEKLAIAFGLMNT 554
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P R++K++ +C H A +F+S + +RE++V+D +HHFKDG CSC D +
Sbjct: 555 TPKTPIRIVKNLRVCSDCHLAIKFISKVYDREIIVRDRIRYHHFKDGTCSCNDYW 609
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 1/158 (0%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +++ +R GK+D+A F PEK+ +SWT +IS + G+ EALD+F + + S
Sbjct: 172 NIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMS 231
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
N T S+L A A + + + + + +++ +I+ +E + +++ + G E +
Sbjct: 232 PNEYTLASSLAACANLVALDQGRWMHVYIKK-NNIQMNERLLAGLIDMYAKCGELEFASK 290
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
K W ++ VHG K A +++
Sbjct: 291 LFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQM 328
>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1004
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/371 (25%), Positives = 177/371 (47%), Gaps = 54/371 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ +++ L+ C + L G Q + + K G +S VG+ L+++ ++CG +++A+ F
Sbjct: 616 NEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALF 675
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++ +++++W II +G ++AL F+ S + TF L A + GLV
Sbjct: 676 EALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVE 735
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E F SM + I P+ +H + MV+ LGR G F+E+ +FI+ + + LIW T+L
Sbjct: 736 EGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQ-NALIWETVLG 794
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV------------------------------ 251
+S++H ++ L + A +KL EL P Y+
Sbjct: 795 ASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKE 854
Query: 252 -GC-WIEIQNKIYEFVSNEELTSEVSD---KLAEIEENMKELGFVLNRSL---------- 296
GC W+E +++ FVS++ ++ + KL E++ + + +V
Sbjct: 855 PGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEK 914
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
+ ++ A+ LIS R+ K++ +C H + +S+I +E+VV+D
Sbjct: 915 KENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRR 974
Query: 352 FHHFKDGKCSC 362
FHHFK+G CSC
Sbjct: 975 FHHFKNGACSC 985
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 101/245 (41%), Gaps = 13/245 (5%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYE----MVHELLERIQLCCGFI-DSYSICDILNSCLNP 59
S++ I WN L Y+ + + +LE GFI + Y+ IL SC
Sbjct: 475 SMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEE-----GFIPNMYTFISILGSCSCL 529
Query: 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
++ G Q A++ K L + V LI++ ++C ++DAD+AF ++ +WT II
Sbjct: 530 FDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVII 589
Query: 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179
+ +AL+ F+ Q N T L + + + +L + + H+
Sbjct: 590 TNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHV 649
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239
S +V+ + G EE + ++ + + W T++ +G A A
Sbjct: 650 SDMFVG-SALVDMYAKCGCMEEAEALFEALI--RRDTIAWNTIICGYAQNGQGNKALTAF 706
Query: 240 DKLLE 244
+L+
Sbjct: 707 RMMLD 711
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ +++ L +C + L++G Q A K GL+ VG+ L+++ ++CG+I+ A F
Sbjct: 212 NEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMF 271
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
PE+N ++W +++ G + L LF N T + LK A
Sbjct: 272 IGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCA 325
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 65/151 (43%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
++ WN+LL + D V +L + + +++ +L C N L G +
Sbjct: 279 DVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHS 338
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K G + +G L+++ S+CG DA FK+ + + + W+ +I+ G E
Sbjct: 339 LIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEE 398
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
++ LF + T N T S L A G
Sbjct: 399 SIKLFHLMRLGDTLPNQYTICSLLSAATNTG 429
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 55/124 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ L+ + E +L ++L + Y+IC +L++ N L G A
Sbjct: 381 VVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHAC 440
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + AV N L+ + + G + D ++S +++ +SW +S + G
Sbjct: 441 VWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRP 500
Query: 132 LDLF 135
L +F
Sbjct: 501 LTIF 504
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 87 LININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN 146
L+N+ ++C A L P+++ +SWT +I V G ++++ LF++ Q N
Sbjct: 153 LVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPN 212
Query: 147 PTTFRSALKAYAL 159
T + LKA +L
Sbjct: 213 EFTLATGLKACSL 225
>gi|357131197|ref|XP_003567226.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Brachypodium distachyon]
Length = 648
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/414 (25%), Positives = 192/414 (46%), Gaps = 63/414 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF---IDSYSICDILNSCLNPILLNVGTQA 68
+ WN +L A + +L R++ C G D+ ++ +L+SC + +VG
Sbjct: 235 VSWNAVLSAHSQNGLAVDALDLYSRMRGCDGHGVEPDAVTLVSVLSSCAHLGARSVGLGV 294
Query: 69 QAYMTKR--GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ YM + G ++ + N LIN +RCG + A F P K+ +SWT +I+ HG
Sbjct: 295 ERYMRGKLPGFRTNVQLCNALINFYARCGCLPQAQQLFNEMPRKSIVSWTALITGYGMHG 354
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
H A++LF+ + L A + G+ E + F +ME Y + P+ EHY
Sbjct: 355 HGEVAINLFQTMVSEGIRPDNVAMVGLLSACSHAGMYDEGRKYFSAMESAYQLRPTLEHY 414
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+ MV+ LGRAG +E E I + P +W LL + ++H ++++ + A + ++E++
Sbjct: 415 TCMVDLLGRAGRLKEARELISSM-PMPADGAVWGALLGACKIHKNVEIGEEAFEHVIEVE 473
Query: 247 P---GMYV-------------------------------GC-WIEIQNKIYEFVSNEE-- 269
P G YV GC ++E + +++ F++++
Sbjct: 474 PTNVGYYVLMANIYTDTGQLDCVVRVRAMMRERGLKKEPGCSYVEHKGRVHLFMADDHSH 533
Query: 270 -LTSEVSDKLAEIEENMKE-----LGFVLNRSL-------------YQTKMKAVALGLIS 310
+ + + ++E+ +KE +G R + + ++ AVA G+++
Sbjct: 534 PQAKRIYELVLKLEQMVKEKTDGTVGIQGGRMIEGHSEKTAVPLIGFHSEKLAVAFGMLN 593
Query: 311 FPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G VIK++ +CG HS + +S I R +V+D FH F+DG CSCKD
Sbjct: 594 TV-GSEIAVIKNLRVCGNCHSFLKTVSAIANRVFLVRDASRFHRFEDGACSCKD 646
>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 660
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 185/377 (49%), Gaps = 59/377 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D SI +L + + L++G + + ++ L+ + + N LI++ ++CG + DA F
Sbjct: 288 DVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVF 347
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTT--FRSALKAYALMGL 162
++ +SWT IISA G +A+ +F + R + +NP + F S L A + GL
Sbjct: 348 NQMQFRDVVSWTSIISAYGKCGQGRDAVAVF--AEMRNSGLNPDSIAFVSVLAACSHAGL 405
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
+ + F M E I P EH++ +V+ LGRAG +E FI+ + P + +W L
Sbjct: 406 LDDGRYYFNLMAEC-GITPKLEHFACVVDLLGRAGKIDEAYGFIRQM-PLEPDERVWGPL 463
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW---------------- 254
L + RV+ +M + A DKLL L+P G YV G W
Sbjct: 464 LSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIK 523
Query: 255 -------IEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV--LNRSLYQTKMK 302
+E+ + ++ F++ + + ++ ++L + MKELG++ + +L+ + +
Sbjct: 524 KLPGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLVGKMKELGYMPETDSALHDVEEE 583
Query: 303 -------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
AVA +I+ G P RV K++ +CG H A + +S I ERE++++D
Sbjct: 584 DKEYHLAVHSEKLAVAFAIINTKPGTPIRVTKNLRVCGDCHVAAKLISKIAEREIIIRDT 643
Query: 350 GSFHHFKDGKCSCKDAY 366
FHHF++G CSC D +
Sbjct: 644 HRFHHFQEGCCSCGDYW 660
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 42 GFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDA 100
GF+ D Y+ +L + L VG Q + K GL + VGN LI + +C + +A
Sbjct: 115 GFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEA 174
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
P ++ +SW ++S +G ++AL+L ++ + N T S L A
Sbjct: 175 QQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPA 230
>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 170/374 (45%), Gaps = 56/374 (14%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
+I +L +C L G + + GL + +V L + ++C + +A F
Sbjct: 243 TIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMI 302
Query: 108 PE--KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165
+ KN ++W +I+A +HG EA+ +F++ + TF L + GL+
Sbjct: 303 AQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDA 362
Query: 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS 225
F M ++ +EP EHY+ +V+ LGRAG E E I + P + P +W LL +
Sbjct: 363 GLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQM-PMQAGPSVWGALLAA 421
Query: 226 SRVHGDMKLAKYALDKLLELDP---GMYV------------------------------- 251
R H ++++A+ A +L L+P G YV
Sbjct: 422 CRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSP 481
Query: 252 GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSLY---------- 297
GC WIEI K + F+ ++ E+ L + E +K G++ + S
Sbjct: 482 GCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKE 541
Query: 298 -----QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
++ A+A GL++ G+ RV K++ +CG H+A +F+S I ERE++V+D F
Sbjct: 542 YNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRF 601
Query: 353 HHFKDGKCSCKDAY 366
H FKDG CSC D +
Sbjct: 602 HCFKDGSCSCGDYW 615
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 4/129 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D++++ +L SC + + +G + GL VG LI++ +CG I DA F
Sbjct: 106 DNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLF 165
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++ SW +I+ + G A DLF+ + R N ++ + + Y G
Sbjct: 166 DKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHR----NIVSWTAMISGYTQNGFAE 221
Query: 165 EAYRLFLSM 173
+A LF M
Sbjct: 222 QALGLFDEM 230
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 102/401 (25%), Positives = 177/401 (44%), Gaps = 55/401 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L + L ++++ ++ +L++C + L+ G Y
Sbjct: 160 VSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTY 219
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + VG L+++ ++CGKI A F + K+ L+W II+ HGH EA
Sbjct: 220 INDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEA 279
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LFK+ + N TF + L A + G+V E +L M Y IEP EHY +++
Sbjct: 280 QQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVID 339
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
L RAG+ EE +E I G +P + P LL R+HG+ +L + +L+ L P G
Sbjct: 340 LLARAGLLEEAMELI-GTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSG 398
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNE---ELTSE 273
Y+ W IE++ ++ FV+ + +++
Sbjct: 399 RYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNK 458
Query: 274 VSDKLAEIEENMKE-LGFVLNRSLYQTKMK---------------AVALGLISFPHGMPT 317
+ DKL EI +K +G+ + M+ A+A GL+
Sbjct: 459 IYDKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAI 518
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDG 358
R++K++ +C H + +S + RE++V+D FHHF+DG
Sbjct: 519 RIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDG 559
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +IN + GKID+A F PE+N +SW ++S V G+ EA LF + R
Sbjct: 101 NTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCR--- 157
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
+ ++ S L YA G EA LF M V ++P+E ++ A G ++ L
Sbjct: 158 -DVVSWNSMLACYAQCGKPNEALALFDQMRAV-GVKPTEATVVSLLSACAHLGALDKGLH 215
Query: 205 F 205
Sbjct: 216 L 216
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 110/246 (44%), Gaps = 16/246 (6%)
Query: 2 KLCSLISDVEI-PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
+L SL SD ++ WN ++ +K EM H + ++ C + S++ I+N
Sbjct: 56 QLFSLCSDRDVVSWNAMIDGYVKRG--EMGHTRMVFDRMVCRDVISWNT--IINGYAIVG 111
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
++ + M +R L+S N +++ +CG +++A F P ++ +SW +++
Sbjct: 112 KIDEAKRLFDEMPERNLVS----WNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLA 167
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYH 178
G P+EAL LF Q R + PT T S L A A +G + + L + +
Sbjct: 168 CYAQCGKPNEALALF--DQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYIND-NR 224
Query: 179 IEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYA 238
IE + + +V+ + G + + + L W T++ +HG +K A+
Sbjct: 225 IEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDV--LAWNTIIAGMAIHGHVKEAQQL 282
Query: 239 LDKLLE 244
++ E
Sbjct: 283 FKEMKE 288
>gi|302799994|ref|XP_002981755.1| hypothetical protein SELMODRAFT_115083 [Selaginella moellendorffii]
gi|300150587|gb|EFJ17237.1| hypothetical protein SELMODRAFT_115083 [Selaginella moellendorffii]
Length = 673
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/386 (26%), Positives = 172/386 (44%), Gaps = 37/386 (9%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A ++ + + L +D ++ +L++C + L + A
Sbjct: 288 VAWNAMIAAYAQSGHSRDSIRIYHVMDLEGVRVDKVTLIGVLDACSSLALTSKTRLVHAR 347
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G+ +G L+N +R G + DADL F E+N +W+ +++A GHP +
Sbjct: 348 IVDTGVELDVVLGTALVNAYARGGHLVDADLVFAEMEERNVATWSAMVAAYAQTGHPDRS 407
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+++++ Q + N T+ S L A GL+ F SM Y IE EEH S +V+
Sbjct: 408 LEMYREMQLQGLRPNYITYVSILFACNHAGLLDHGLDYFASMGRDYGIESCEEHCSCIVD 467
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG--- 248
LGR+G +E E + VP +L W LL + R HGD++ + +++ G
Sbjct: 468 LLGRSGRLDEA-EALMASVPYRLGISAWMCLLGACRTHGDVERGARVARRAFQVESGEVA 526
Query: 249 -------MYVG------------------------CWIEIQNKIYEFVSNEELTSEVSDK 277
MY G ++EI +++EF+ +E E
Sbjct: 527 PYVALSNMYAGHGMWDEVSRVRQLMANTLDKSTGKSFVEIDGRLHEFIQGDETHPEKDSI 586
Query: 278 LAEI-EENMKELGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFM 336
A+I E + L L+ K+ AVA ++ +P RV+ S+G+C H+ + +
Sbjct: 587 QAKILELELDSPTVPLFHCLHSEKV-AVAFAMLKTSGEIPLRVVSSLGICHECHAFMKGI 645
Query: 337 STIIERELVVKDPGSFHHFKDGKCSC 362
S RE+VV+D H F G CSC
Sbjct: 646 SKRCRREIVVRDAEMLHRFDGGSCSC 671
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 64/150 (42%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ A + +L R+ + + +L+ C L+ A++
Sbjct: 189 WNAMVAAYSRNGQMAQAVLVLRRMAVEGVRPGEGTFVGMLSWCCTVGALDEARSIHAHIL 248
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
GL S P VG L+++ RCG + A AF+ +K+ ++W +I+A GH +++
Sbjct: 249 ATGLESRPTVGTTLVSMYGRCGSLGGAVCAFQRIRDKDIVAWNAMIAAYAQSGHSRDSIR 308
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
++ ++ T L A + + L
Sbjct: 309 IYHVMDLEGVRVDKVTLIGVLDACSSLALT 338
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 105/379 (27%), Positives = 168/379 (44%), Gaps = 66/379 (17%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
S+ +L++C G ++ K G +V N LI++ SRCG + A L F+
Sbjct: 271 SLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGM 330
Query: 108 PEKNSL-SWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
EK + SWT +I+ HG EA+ LF + + + +F S L A + GL+ E
Sbjct: 331 QEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEG 390
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226
F M+ VYHIEP EHY MV+ GR+G ++ +FI + P ++WRTLL +
Sbjct: 391 EDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQM-PIPPTAIVWRTLLGAC 449
Query: 227 RVHGDMKLAKYALDKLLELDPG------------MYVGCW-------------------- 254
HG+++LA+ +L ELDP G W
Sbjct: 450 SSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTA 509
Query: 255 ---IEIQNKIYEFVSNEE------------------------LTSEVSDKLAEIEENMKE 287
+E+ +Y+F + E+ T EV+ L ++EE KE
Sbjct: 510 WSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKE 569
Query: 288 LGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
++ ++ A+A L G R++K++ +C H+ + S + E++V+
Sbjct: 570 -----DQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVR 624
Query: 348 DPGSFHHFKDGKCSCKDAY 366
D FH FKDG CSC+D +
Sbjct: 625 DRNRFHSFKDGSCSCRDYW 643
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 9/174 (5%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F DS+S ++ + N L G Q K GL SH VG LI + CG ++ A
Sbjct: 103 FPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARK 162
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F + N ++W +I+A + A ++F R N T++ L Y G
Sbjct: 163 VFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVR----NHTSWNVMLAGYIKAGE 218
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP 216
+ A R+F M + +S M+ + G F E + + + + P
Sbjct: 219 LESAKRIFSEMP-----HRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSP 267
>gi|302780855|ref|XP_002972202.1| hypothetical protein SELMODRAFT_96876 [Selaginella moellendorffii]
gi|300160501|gb|EFJ27119.1| hypothetical protein SELMODRAFT_96876 [Selaginella moellendorffii]
Length = 485
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/390 (25%), Positives = 173/390 (44%), Gaps = 38/390 (9%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ L+ A + EL R+ L + ++ +L +C + + G + A
Sbjct: 95 VSWSGLIAALAEHGRGRDAIELFHRMDLDGIQPNEVTLLSVLEACASTGAIAEGRRTHAR 154
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
++ G + V N L+N+ +CG + A F + +N +SWT +++ +HGH EA
Sbjct: 155 VSGCGFEAETNVANALVNMYGKCGHLGSARTVFDAMTWRNVVSWTAMLAGYAHHGHTEEA 214
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+FK N TF S L + G+V + F M + I P EHY +++
Sbjct: 215 RRVFKAMALEGIQPNVITFVSVLFNCSHAGVVSDGLEQFHIMVGDFGIVPVTEHYGCVID 274
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDM----KLAKYALDKLLELDP 247
LGRAG EE E ++ +P + W +LL + +VH ++AK A D L
Sbjct: 275 LLGRAGWLEEAEELLR-TMPVEPDKAAWNSLLGACKVHSHTDRAKRIAKLACDLALPFAS 333
Query: 248 GMYV--------------------GCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKE 287
YV IE++ +++EFV+ + + + +AE++ +E
Sbjct: 334 APYVLLSNMYTDEEQQSDPEEDQCSSLIEVKGRVHEFVAGDWSHPRIEEIVAELQRLQEE 393
Query: 288 LGFVLNRSLYQTKMK-------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACR 334
+ + SL + + A+A G+++ P G V+ + +C H A +
Sbjct: 394 MMILRGSSLCEEGGQEGSVQENEHSLKLAIAFGVLASPQGSTINVVNTRRICVECHDAAK 453
Query: 335 FMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+S I R++VV+D FHH + G CSC D
Sbjct: 454 VISKIAGRKIVVRDSYRFHHIEQGVCSCGD 483
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 7/151 (4%)
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
L SC L G + G + VGN L+N+ S+C ++D A AF+ K+
Sbjct: 2 LCSCSGLRDLEQGKSIHDRVAADGFDTQVFVGNALVNMYSKCRRLDLARAAFERIDSKDV 61
Query: 113 LSWTFIISARVNHGHPSEALD--LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF 170
+SW +I+A G EAL+ +F R N ++ + A A G +A LF
Sbjct: 62 VSWNSMIAAHSQLGGSDEALETAVFD----RMERRNVVSWSGLIAALAEHGRGRDAIELF 117
Query: 171 LSMEEVYHIEPSEEHYSIMVEALGRAGMFEE 201
M ++ I+P+E ++EA G E
Sbjct: 118 HRM-DLDGIQPNEVTLLSVLEACASTGAIAE 147
>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
Length = 1113
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 106/368 (28%), Positives = 165/368 (44%), Gaps = 58/368 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N L + ++E +LL I + +++ +L+ N + G Q +
Sbjct: 440 VSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQ 499
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL + V N LI++ S+CG ID A F +N +SWT +I+ HG
Sbjct: 500 VVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRV 559
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+ F N T+ + L A + +GLV E +R F SM E + I+P EHY+ MV+
Sbjct: 560 LETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVD 619
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD---PG 248
L RAG+ + EFI +P + L+WRT L + RVH + +L K A K+LELD P
Sbjct: 620 LLCRAGLLTDAFEFIN-TMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPA 678
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEEL---TSE 273
Y+ GC WIE+ +KI++F + +
Sbjct: 679 AYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQ 738
Query: 274 VSDKLAEIEENMKELGFVLN------------------RSLYQTKMK-AVALGLISFPHG 314
+ D+L + +K G+V + R LYQ K AVA GLIS
Sbjct: 739 IYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKS 798
Query: 315 MPTRVIKS 322
P ++I++
Sbjct: 799 RPLKMIQT 806
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ +C N VG Q KRGL S+ +V N +I++ + +++DA AF
Sbjct: 372 NHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAF 431
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
+S EKN +S+ + + + +A L + R ++ TF S L A +G +
Sbjct: 432 ESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSI 490
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 12 IPWNLLLKACIKAK-DYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQ 69
+ W L++ C++ E + L+ + GF D +++ + ++C L++G Q
Sbjct: 235 VTWTLMITRCMQMGFPREAIRFFLDMV--LSGFESDKFTLSSVFSACAELENLSLGKQLH 292
Query: 70 AYMTKRGLISHPAVGNCLININSRC---GKIDDADLAFKSTPEKNSLSWTFIISARV-NH 125
++ + GL+ V L+++ ++C G +DD F + + +SWT +I+ + N
Sbjct: 293 SWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNC 350
Query: 126 GHPSEALDLFKDKQWR-YTSMNPTTFRSALKA 156
+EA++LF + + + N TF SA KA
Sbjct: 351 NLATEAINLFSEMITQGHVEPNHFTFSSAFKA 382
Score = 37.7 bits (86), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 12 IPWNLLLKACI--KAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQA 68
+ W+ ++ AC ++ + + +E ++L G + + Y ++ +C N + VG
Sbjct: 132 VSWSAMM-ACYGNNGRELDAIKVFVEFLEL--GLVPNDYCYTAVIRACSNSDFVGVGRVT 188
Query: 69 QAYMTKRG-LISHPAVGNCLININSRC-GKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
++ K G S VG LI++ + ++A F E N ++WT +I+ + G
Sbjct: 189 LGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMG 248
Query: 127 HPSEALDLFKD 137
P EA+ F D
Sbjct: 249 FPREAIRFFLD 259
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 105/379 (27%), Positives = 168/379 (44%), Gaps = 66/379 (17%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
S+ +L++C G ++ K G +V N LI++ SRCG + A L F+
Sbjct: 263 SLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGM 322
Query: 108 PEKNSL-SWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
EK + SWT +I+ HG EA+ LF + + + +F S L A + GL+ E
Sbjct: 323 QEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEG 382
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226
F M+ VYHIEP EHY MV+ GR+G ++ +FI + P ++WRTLL +
Sbjct: 383 EDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQM-PIPPTAIVWRTLLGAC 441
Query: 227 RVHGDMKLAKYALDKLLELDPG------------MYVGCW-------------------- 254
HG+++LA+ +L ELDP G W
Sbjct: 442 SSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTA 501
Query: 255 ---IEIQNKIYEFVSNEE------------------------LTSEVSDKLAEIEENMKE 287
+E+ +Y+F + E+ T EV+ L ++EE KE
Sbjct: 502 WSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKE 561
Query: 288 LGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
++ ++ A+A L G R++K++ +C H+ + S + E++V+
Sbjct: 562 -----DQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVR 616
Query: 348 DPGSFHHFKDGKCSCKDAY 366
D FH FKDG CSC+D +
Sbjct: 617 DRNRFHSFKDGSCSCRDYW 635
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 9/174 (5%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F DS+S ++ + N L G Q K GL SH VG LI + CG ++ A
Sbjct: 95 FPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARK 154
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F + N ++W +I+A + A ++F R N T++ L Y G
Sbjct: 155 VFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVR----NHTSWNVMLAGYIKAGE 210
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP 216
+ A R+F M + +S M+ + G F E + + + + P
Sbjct: 211 LESAKRIFSEMP-----HRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSP 259
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 170/374 (45%), Gaps = 56/374 (14%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
+I +L +C L G + + GL + +V L + ++C + +A F
Sbjct: 317 TIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMI 376
Query: 108 PE--KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165
+ KN ++W +I+A +HG EA+ +F++ + TF L + GL+
Sbjct: 377 AQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDA 436
Query: 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS 225
F M ++ +EP EHY+ +V+ LGRAG E E I + P + P +W LL +
Sbjct: 437 GLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQM-PMQAGPSVWGALLAA 495
Query: 226 SRVHGDMKLAKYALDKLLELDP---GMYV------------------------------- 251
R H ++++A+ A +L L+P G YV
Sbjct: 496 CRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSP 555
Query: 252 GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSLY---------- 297
GC WIEI K + F+ ++ E+ L + E +K G++ + S
Sbjct: 556 GCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKE 615
Query: 298 -----QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
++ A+A GL++ G+ RV K++ +CG H+A +F+S I ERE++V+D F
Sbjct: 616 YNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRF 675
Query: 353 HHFKDGKCSCKDAY 366
H FKDG CSC D +
Sbjct: 676 HCFKDGSCSCGDYW 689
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 4/129 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D++++ +L SC + + +G + GL VG LI++ +CG I DA F
Sbjct: 180 DNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLF 239
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++ SW +I+ + G A DLF+ + R N ++ + + Y G
Sbjct: 240 DKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHR----NIVSWTAMISGYTQNGFAE 295
Query: 165 EAYRLFLSM 173
+A LF M
Sbjct: 296 QALGLFDEM 304
>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g15510, chloroplastic; Flags: Precursor
gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 866
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 169/356 (47%), Gaps = 56/356 (15%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G + A++ + G+ + N L+++ RCG+++ A F S +K+ SW +++
Sbjct: 514 LMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQ-KKDVTSWNILLTG 572
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
G S ++LF + TF S L + +V + F ME+ Y + P
Sbjct: 573 YSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMED-YGVTP 631
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
+ +HY+ +V+ LGRAG +E +FI+ + P P +W LL + R+H + L + +
Sbjct: 632 NLKHYACVVDLLGRAGELQEAHKFIQKM-PVTPDPAVWGALLNACRIHHKIDLGELSAQH 690
Query: 242 LLELDP---GMYV-------------------------------GC-WIEIQNKIYEFVS 266
+ ELD G Y+ GC W+E++ K++ F+S
Sbjct: 691 IFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLS 750
Query: 267 NEEL---TSEVSDKLAEIEENMKELGFVL---NRSLYQTKM------------KAVALGL 308
+++ T E++ L E M E+G + S+ +T++ KA+A GL
Sbjct: 751 DDKYHPQTKEINTVLEGFYEKMSEVGLTKISESSSMDETEISRDEIFCGHSERKAIAFGL 810
Query: 309 ISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
I+ GMP V K++ MC H +F+S + RE+ V+D FHHFKDG+CSC D
Sbjct: 811 INTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRDAEHFHHFKDGECSCGD 866
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L++C L+ G + K LIS+ V N LIN+ S+C ID A F
Sbjct: 397 DEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIF 456
Query: 105 KSTPEKNSLSWTFIISA-RVNH 125
+ P KN +SWT II+ R+N+
Sbjct: 457 HNIPRKNVISWTSIIAGLRLNN 478
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 5/151 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYM 72
WN+L+ K ++ L R+ G D Y+ +L +C L G + ++
Sbjct: 163 WNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHV 222
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
+ G V N LI + +CG + A L F P ++ +SW +IS +G E L
Sbjct: 223 VRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGL 282
Query: 133 DLFKDKQWRYTSMNPT--TFRSALKAYALMG 161
+LF R S++P T S + A L+G
Sbjct: 283 ELF--FAMRGLSVDPDLMTLTSVISACELLG 311
Score = 38.1 bits (87), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 6/153 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI---DSYSICDILNSCLNPILLNVGTQA 68
I WN ++ + M HE LE G D ++ ++++C +G
Sbjct: 263 ISWNAMISGYFENG---MCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDI 319
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
AY+ G +V N L + G +A+ F K+ +SWT +IS + P
Sbjct: 320 HAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLP 379
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+A+D ++ + T + L A A +G
Sbjct: 380 DKAIDTYRMMDQDSVKPDEITVAAVLSACATLG 412
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 108/417 (25%), Positives = 186/417 (44%), Gaps = 70/417 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN L+ Y+ L + + + ++ IL +C + + +G Y
Sbjct: 287 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVY 346
Query: 72 MTKR--GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ KR G+ + + LI++ ++CG I+ A F S ++ SW +I HG +
Sbjct: 347 INKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRAN 406
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
A D+F + + TF L A + G++ +F SM+E Y I P EHY M
Sbjct: 407 AAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCM 466
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLEL-- 245
++ LG +G+F+E E I + ++ P +IW +LL + ++HG+++L + L+++
Sbjct: 467 IDLLGHSGLFKEAEEMINTM---EMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEP 523
Query: 246 -DPGMYV---------GCW-----------------------IEIQNKIYEFV------- 265
+PG YV G W IEI + ++EF+
Sbjct: 524 KNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHP 583
Query: 266 SNEEL----------------TSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLI 309
N E+ + S+ L E+EE KE + ++ A+A GLI
Sbjct: 584 RNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGAL-----RHHSEKLAIAFGLI 638
Query: 310 SFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
S G ++K++ +C H A + +S I +RE++ +D FHHF+DG CSC D +
Sbjct: 639 STKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 695
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/252 (20%), Positives = 109/252 (43%), Gaps = 10/252 (3%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
I DV + WN ++ + + + EL + + D ++ ++++C + +G
Sbjct: 182 IKDV-VSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGR 240
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q +++ G S+ + N LI++ +CG+++ A F+ K+ +SW +I +
Sbjct: 241 QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMN 300
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL--VGEAYRLFLSMEEVYHIEPSEE 184
EAL LF++ S N T S L A A +G +G ++++ + + + +
Sbjct: 301 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYIN-KRLKGVANASS 359
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL-- 242
H + +++ + G E + I+ L W ++ +HG A ++
Sbjct: 360 HRTSLIDMYAKCGDIEAAQQVFDSILNRSLSS--WNAMIFGFAMHGRANAAFDIFSRMRK 417
Query: 243 --LELDPGMYVG 252
+E D +VG
Sbjct: 418 NEIEPDDITFVG 429
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 5/154 (3%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y+ +L SC G Q ++ K G V LI++ + G+++DA F
Sbjct: 89 YTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQ 148
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
+ ++ +S+T +I+ + G+ + A +F + + + ++ + + YA G EA
Sbjct: 149 SSHRDVVSYTALITGYASKGYIASAQKMFDEIPIK----DVVSWNAMISGYAETGNNKEA 204
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
LF M + ++ P E +V A ++ E
Sbjct: 205 LELFKEMMKT-NVRPDESTMVSVVSACAQSASIE 237
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 160/341 (46%), Gaps = 62/341 (18%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
VG LI++ +CG + DA F +K+ + W +I+ HG +AL++F Q R
Sbjct: 557 VGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFV--QSRE 614
Query: 143 TSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
+ PT TF L A + G+V E F SME Y I+P EHY MV+ LGRAG+ +
Sbjct: 615 QGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIK 674
Query: 201 EVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLE---LDPGMY----- 250
E ++ + K+ P ++W +LL + R+H +M L + D L+ + GMY
Sbjct: 675 EAFCLVQSM---KITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYILLSN 731
Query: 251 ----VGCW-----------------------IEIQNKIYEFVSNE---ELTSEVSDKLAE 280
VG W IEI ++YEFV+ + T E+ L +
Sbjct: 732 IYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHPRTDEIYVMLDK 791
Query: 281 IEENMKELGFVLNRSLY------QTKMKAVAL---------GLISFPHGMPTRVIKSVGM 325
+ +KE G V L TK KA+A+ GLIS G +++K++
Sbjct: 792 MNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLALAFGLISTQPGATIKIVKNLRA 851
Query: 326 CGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
C H+ + +S I R++V +D FHHF DG CSC D +
Sbjct: 852 CSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCSCGDYW 892
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 2/141 (1%)
Query: 95 GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
G +DDA F P K+ + W +I HG P+EAL LF+ + T L
Sbjct: 467 GALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVL 526
Query: 155 KAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL 214
A A +G V L ++ ++ S + +++ + G + ++ GI G
Sbjct: 527 SAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGI--GDK 584
Query: 215 CPLIWRTLLLSSRVHGDMKLA 235
++W ++ +HGD + A
Sbjct: 585 DIVVWNAMINGYAMHGDSRKA 605
>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
Length = 795
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 113/411 (27%), Positives = 187/411 (45%), Gaps = 65/411 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT----- 66
+ WN ++ A + + Y+ L + + D +++ ++ P + +G+
Sbjct: 390 VSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVV-----PAFVLLGSIRQCK 444
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q +Y+ K G + N ++++ +RCG I + F P K+ +SW II HG
Sbjct: 445 QMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHG 504
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
AL++F + + N +TF S L A ++ GL E ++ F SM++ Y + P EHY
Sbjct: 505 QGKIALEMFDEMKCSGMEPNESTFVSVLTACSVSGLEAEGWKEFNSMQQEYGMIPQIEHY 564
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL- 245
M + LGRAG EVL FI+ + P IW +LL +SR D+ +A+YA +++ +L
Sbjct: 565 GCMTDLLGRAGELREVLRFIENM-PIAPTSRIWGSLLTASRNKNDIDIAEYAAERIFQLE 623
Query: 246 --DPGMYV---------GCW-----------------------IEIQNKIYEFVSNEELT 271
+ G YV G W +E+ NK FV N +++
Sbjct: 624 HNNTGCYVVLSSMYADAGRWEDVERIRSLMKEKGLRRTEARSLVELNNKECSFV-NGDMS 682
Query: 272 SEVSDKLAEIEENM-KELG--------------FVLNRSLYQTKMK---AVALGLISFPH 313
S+K+ E + + + +G F + ++ K AVA GLIS
Sbjct: 683 HPQSEKIHEFSDILSRNIGEDLDSSSNLRDSDPFASSTTVLPNKHSVRLAVAFGLISSEA 742
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G P V K+V +C + H A + +S R++VV D +H F DG C C D
Sbjct: 743 GSPVLVKKNVRVCNHCHHALKLISKYSGRKIVVGDTKIYHIFSDGSCCCGD 793
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L C L G A A + K GL + N L+ + ++ G + DA+ F
Sbjct: 119 DRFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVF 178
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
P ++ +SW ++ V++G + AL F++
Sbjct: 179 DGMPARDIVSWNTMVDGYVSNGMGALALACFRE 211
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 91/202 (45%), Gaps = 4/202 (1%)
Query: 42 GF-IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDA 100
GF ++ + ++L +C G AY+ +R + H + L+ + + GK++ +
Sbjct: 318 GFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVESS 377
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
+ F +K +SW +I+A + EA+ LF + + + T + + A+ L+
Sbjct: 378 EKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLL 437
Query: 161 GLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWR 220
G + + ++ + ++ + + + ++M R G E + PGK + W
Sbjct: 438 GSIRQCKQMHSYIVKLGYGDSTLIMNAVM-HMYARCGNIVASREIFDKM-PGKDV-ISWN 494
Query: 221 TLLLSSRVHGDMKLAKYALDKL 242
T+++ +HG K+A D++
Sbjct: 495 TIIIGYAIHGQGKIALEMFDEM 516
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS + L +C L +G + Y + GL VG L+++ +CG + A+ F
Sbjct: 221 DSVGVIAALAACCLESALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVF 280
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
P + ++W +I + P +A D F
Sbjct: 281 AKMPLRTVVTWNCMIGGYALNERPVDAFDCF 311
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 108/411 (26%), Positives = 186/411 (45%), Gaps = 68/411 (16%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W ++ ++ ++ E +Q + ++I +L++C L +G +YM
Sbjct: 246 WTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMR 305
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K + + VGN LIN+ SRCG ID+A F +++ +++ +IS +G +A++
Sbjct: 306 KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIE 365
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF+ R TF L A + GLV + +F SM Y +EP EHY MV+ L
Sbjct: 366 LFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLL 425
Query: 194 GRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYA---LDKLLELDPG 248
GR G EE + I+ + K+ P ++ TLL + ++H +++L + L+ + D G
Sbjct: 426 GRVGRLEEAYDLIRTM---KMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSG 482
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNE---ELTSE 273
YV G W IE+ N+I+EF+ +
Sbjct: 483 TYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKER 542
Query: 274 VSDK--------------------LAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPH 313
+ +K L +IE+ KE ++ ++ A+ GLIS
Sbjct: 543 IYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMH-----SERLAICYGLISTEP 597
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
RV+K++ +C HSA + ++ I R++VV+D FH+F++G CSC D
Sbjct: 598 CTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGD 648
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 14/165 (8%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
+ L+ + + +Y +L R+ D+Y + IL +C + + L G + +
Sbjct: 115 YTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRAL 174
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G S+ V ++ + +CG++ DA F+ PE + ++ T +IS+ + G EA
Sbjct: 175 KLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGA 233
Query: 134 LFKDKQWR----YTSM------NPTTFRSALKAYALMGLVGEAYR 168
+F + + +T+M N T R AL+A+ G+ GE R
Sbjct: 234 VFSRVRRKDTVCWTAMIDGFVRNEETNR-ALEAFR--GMQGENVR 275
>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
lyrata]
gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
lyrata]
Length = 1134
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 114/410 (27%), Positives = 184/410 (44%), Gaps = 58/410 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W+ L+ + D+ L +R+Q IDS+ + I+ + LL G Q QA
Sbjct: 642 ISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQAL 701
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K +V N L+++ +CG +D+A+ F K+ +SWT +I+ HG +A
Sbjct: 702 VVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKA 761
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ +F + + + L A + G++ E LF + E I+P EHY+ +V+
Sbjct: 762 VSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVD 821
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD---PG 248
LGRAG +E + +P K IW+TLL RVHGD++L K LL +D P
Sbjct: 822 LLGRAGRLKEAKHLVD-TMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGKNPA 880
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEE---LTSE 273
YV W+EI+ +++ F S E+ LT
Sbjct: 881 NYVMMSNLYGQAGYWNEQGNARELGSIKGLQKEAGMSWVEIEREVHFFRSGEDSHPLTLV 940
Query: 274 VSDKLAEIEENMK-ELGFV--LNRSLY-----------QTKMKAVALGLISFPHGM---- 315
+ + L E+E ++ ELG+V L L+ + + +A+GL G+
Sbjct: 941 IQETLKEVERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQKG 1000
Query: 316 -PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
RV K++ +C H + +S I + VV+D FH F+DG CSC D
Sbjct: 1001 KTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGD 1050
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 13/207 (6%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F + C +LN+ L G Q + K G VGN L+++ S+CG+I++A+
Sbjct: 473 FSTNLKACGLLNA------LEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEK 526
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF--RSALKAYALM 160
F+ ++ +SW +I+ V+ G+ S AL F Q P F S LKA +
Sbjct: 527 VFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSST 586
Query: 161 GLV--GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLI 218
G++ G+ FL + +H S +V+ + G + I + +
Sbjct: 587 GMIYAGKQIHGFL-VRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTM--IS 643
Query: 219 WRTLLLSSRVHGDMKLAKYALDKLLEL 245
W +L+L GD A +L EL
Sbjct: 644 WSSLILGYAQEGDFVEAMGLFKRLQEL 670
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGL--ISHPAVGNCLININSRCGKIDDADL 102
D +++ +L +C + ++ G Q ++ + G S + L+++ +CG + A
Sbjct: 572 DEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARK 631
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
AF EK +SW+ +I G EA+ LFK Q + ++ S + +A L
Sbjct: 632 AFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFAL 691
Query: 163 VGEAYRL 169
+ + ++
Sbjct: 692 LQQGKQM 698
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N LI++ +C + A F S PE+N +SWT ++S V +G + +L LF + +
Sbjct: 408 NYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIY 467
Query: 145 MNPTTFRSALKAYALM 160
N TF + LKA L+
Sbjct: 468 PNEFTFSTNLKACGLL 483
>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 566
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 182/391 (46%), Gaps = 58/391 (14%)
Query: 32 ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91
+L +R+ ++ ++ +L C + L+VG + + ++G+ V LI++
Sbjct: 178 QLFQRMLEVGVDVNEATVISVLRGCADSGALSVGRKVHGIVKEKGIDFKANVCTALIHMY 237
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR 151
S+CG ++ A F +++ WT +I HG EA++LF + + + T
Sbjct: 238 SKCGCLESAREVFDDVLDRDVFVWTAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIM 297
Query: 152 SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVP 211
L AY GLV E Y F +++ Y ++P+ +H+ MV+ L + G EE +FI + P
Sbjct: 298 VVLSAYRNAGLVREGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAM-P 356
Query: 212 GKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL------DPGMYV---------GCW-- 254
K +IWRTL+ + +VH D + A+ L K LEL D G Y+ G W
Sbjct: 357 MKPDAVIWRTLIWACKVHADTERAE-RLMKHLELQGMSAHDSGSYILASNVYASTGKWCD 415
Query: 255 ---------------------IEIQNKIYEFV---SNEELTSEVSDKLAEIEENMKELGF 290
IE+ ++EFV + T ++ KL ++ + +++ G+
Sbjct: 416 KAEVRELMNKKGLVKPPGSSRIEVDGVVHEFVMGDYDHPDTEKIFIKLDQMVDKLRKEGY 475
Query: 291 VLNRS---------------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRF 335
S L+ ++ A+A GLI G R++K++ C H +
Sbjct: 476 NPKVSEVMLEMDDEEKAIQLLHHSEKLALAYGLIRTCPGSKIRIVKNLRSCEDCHEFMKL 535
Query: 336 MSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+S + +R+++V+D FHHFK+G CSCKD +
Sbjct: 536 ISKVYQRDIIVRDRIRFHHFKNGDCSCKDYW 566
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 84/202 (41%), Gaps = 6/202 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+++ L SC L Q ++ K G + N LI++ S G++ A F
Sbjct: 90 DTFTYSFALKSCGRLKLTQQAKQLHGFINKMGFGFDLYIQNALIHMYSEIGELVIARQVF 149
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++ +SWT +I+ VNH EA+ LF+ +N T S L+ A G +
Sbjct: 150 DRMSHRDVVSWTSMIAGFVNHHLTVEAIQLFQRMLEVGVDVNEATVISVLRGCADSGALS 209
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
++ ++E I+ + ++ + G E E ++ + +W ++
Sbjct: 210 VGRKVHGIVKE-KGIDFKANVCTALIHMYSKCGCLESAREVFDDVLDRDV--FVWTAMIY 266
Query: 225 SSRVHGDMKLAKYALDKLLELD 246
HG + K A++ LE++
Sbjct: 267 GLACHG---MCKEAIELFLEME 285
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 108/411 (26%), Positives = 187/411 (45%), Gaps = 68/411 (16%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W ++ ++ ++ E +Q + ++I +L++C L +G +YM
Sbjct: 246 WTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMR 305
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K + + VGN LIN+ SRCG ID+A F +++ +++ +IS +G +A++
Sbjct: 306 KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIE 365
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF+ R TF L A + GLV +++F SM Y +EP EHY MV+ L
Sbjct: 366 LFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLL 425
Query: 194 GRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKY---ALDKLLELDPG 248
GR G EE + I+ + K+ P ++ TLL + ++H +++L + L+ + D G
Sbjct: 426 GRVGRLEEAYDLIRTM---KMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSG 482
Query: 249 MYV---------GCW-----------------------IEIQNKIYEFVSNE---ELTSE 273
YV G W IE+ N+I+EF+ +
Sbjct: 483 TYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKER 542
Query: 274 VSDK--------------------LAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPH 313
+ +K L +IE+ KE ++ ++ A+ GLIS
Sbjct: 543 IYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIH-----SERLAICYGLISTEP 597
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
RV+K++ +C HSA + ++ I R++VV+D FH+F++G CSC D
Sbjct: 598 CTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGD 648
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
+ L+ + + +Y +L R+ D+Y + IL +C + + L G + +
Sbjct: 115 YTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRAL 174
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K GL S+ V ++ + +CG++ DA F+ PE + ++ T +IS+ + G EA
Sbjct: 175 KLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGA 233
Query: 134 LFKDKQWR----YTSMNPTTFRS-----ALKAYALMGLVGEAYR 168
+F + + +T+M R+ AL+A+ G+ GE R
Sbjct: 234 VFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFR--GMQGENVR 275
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 105/411 (25%), Positives = 188/411 (45%), Gaps = 57/411 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSC--LNPILLNVGTQAQ 69
+ W ++ + + E +++Q D ++ ++++C L + +
Sbjct: 241 VAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDI 300
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
A + G + VG+ LI++ S+CG D+A F+ E+N S++ +I HG
Sbjct: 301 AERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAH 360
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
AL LF D N TF L A + GLV + +LF ME+ + + PS +HY+ M
Sbjct: 361 SALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACM 420
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
V+ LGRAG EE L+ +K +P + +W LL + R+HG+ +A+ A ++L +L+P
Sbjct: 421 VDLLGRAGCLEEALDLVK-TMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNG 479
Query: 248 -GMYV-------------------------------GC-WIEIQN-KIYEFVSNEEL--- 270
G Y+ GC W E +N +I++F + +
Sbjct: 480 IGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPR 539
Query: 271 TSEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGM 315
+SE+ L ++ E ++ G+ N + ++ A+A GL+ G
Sbjct: 540 SSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGD 599
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+++K++ +C H+ S I RE++V+D FHHF +G CSC + +
Sbjct: 600 TIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 5/161 (3%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVG 65
+ V ++ L KAC A + ++ ++ + L GF D Y +++ + L
Sbjct: 138 VGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCA 197
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ M++R ++S LI ++ G ++ A F P K+ ++WT +++ +
Sbjct: 198 RKVFDEMSERDVVSWTE----LIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQN 253
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
G P EAL+ F+ Q + T + A A +G V A
Sbjct: 254 GRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHA 294
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 108/421 (25%), Positives = 192/421 (45%), Gaps = 68/421 (16%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
+++ + W ++ ++ ++ E +Q + ++I +L++C L +G
Sbjct: 195 VVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIG 254
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+YM K + + VGN LIN+ SRCG ID+A F +++ +++ +IS +
Sbjct: 255 RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMN 314
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
G +A++LF+ R TF L A + GLV +++F SM Y +EP EH
Sbjct: 315 GKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEH 374
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKY---ALD 240
Y MV+ LGR G EE + I+ + K+ P ++ TLL + ++H +++L + L+
Sbjct: 375 YGCMVDLLGRVGRLEEAYDLIRTM---KMTPDHIMLGTLLSACKMHKNLELGEQVAKVLE 431
Query: 241 KLLELDPGMYV---------GCW-----------------------IEIQNKIYEFVSNE 268
+ D G YV G W IE+ N+I+EF+ +
Sbjct: 432 DRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGD 491
Query: 269 ---ELTSEVSDK--------------------LAEIEENMKELGFVLNRSLYQTKMKAVA 305
+ +K L +IE+ KE ++ ++ A+
Sbjct: 492 LRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIH-----SERLAIC 546
Query: 306 LGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDA 365
GLIS RV+K++ +C HSA + ++ I R++VV+D FH+F++G CSC D
Sbjct: 547 YGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDY 606
Query: 366 Y 366
+
Sbjct: 607 W 607
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 4/152 (2%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
+ L+ + + +Y +L R+ D+Y + IL +C + + L G + +
Sbjct: 98 YTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRAL 157
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE----KNSLSWTFIISARVNHGHPS 129
K GL S+ V ++ + +CG++ DA F+ PE K+++ WT +I V + +
Sbjct: 158 KLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMN 217
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
AL+ F+ Q N T L A + +G
Sbjct: 218 RALEAFRGMQGENVRPNEFTIVCVLSACSQLG 249
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 108/421 (25%), Positives = 191/421 (45%), Gaps = 68/421 (16%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
+++ + W ++ ++ ++ E +Q + ++I +L++C L +G
Sbjct: 202 VVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIG 261
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+YM K + + VGN LIN+ SRCG ID+A F +++ +++ +IS +
Sbjct: 262 RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMN 321
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
G +A++LF+ R TF L A + GLV + +F SM Y +EP EH
Sbjct: 322 GKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEH 381
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYA---LD 240
Y MV+ LGR G EE + I+ + K+ P ++ TLL + ++H +++L + L+
Sbjct: 382 YGCMVDLLGRVGRLEEAYDLIRTM---KMTPDHIMLGTLLSACKMHKNLELGEQVAKELE 438
Query: 241 KLLELDPGMYV---------GCW-----------------------IEIQNKIYEFVSNE 268
+ D G YV G W IE+ N+I+EF+ +
Sbjct: 439 DRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGD 498
Query: 269 ---ELTSEVSDK--------------------LAEIEENMKELGFVLNRSLYQTKMKAVA 305
+ +K L +IE+ KE ++ ++ A+
Sbjct: 499 LRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMH-----SERLAIC 553
Query: 306 LGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDA 365
GLIS RV+K++ +C HSA + ++ I R++VV+D FH+F++G CSC D
Sbjct: 554 YGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDY 613
Query: 366 Y 366
+
Sbjct: 614 W 614
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 4/152 (2%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
+ L+ + + +Y +L R+ D+Y + IL +C + + L G + +
Sbjct: 105 YTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRAL 164
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE----KNSLSWTFIISARVNHGHPS 129
K G S+ V ++ + +CG++ DA F+ PE K+++ WT +I V + +
Sbjct: 165 KLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETN 224
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
AL+ F+ Q N T L A + +G
Sbjct: 225 RALEAFRGMQGENVRPNEFTIVCVLSACSQLG 256
>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
Length = 897
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 157/318 (49%), Gaps = 39/318 (12%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + E H+ R+ D+++ +L++C N + +G Q A
Sbjct: 551 VSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQ 610
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K+ L S + + L+++ S+CG + D+ L F+ P ++ ++W ++ +HG EA
Sbjct: 611 IIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEA 670
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF+ Q N TF S L+A A MGLV + F M Y ++P EHYS MV+
Sbjct: 671 LKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSEHYSCMVD 730
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
LGR+G +E L ++ + P + +IWR LL ++HG++++A+ A LL+LDP
Sbjct: 731 ILGRSGRIDEALNLVQKM-PFEADAVIWRNLLSVCKIHGNVEVAEKATRALLQLDPQDSS 789
Query: 248 ------------GMY------------------VGC-WIEIQNKIYEFVSNEE---LTSE 273
GM+ GC WIE++++++ F+ ++ E
Sbjct: 790 ACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGCSWIELKDEVHAFLVGDKGHPRDEE 849
Query: 274 VSDKLAEIEENMKELGFV 291
+ +KL + M+ +G++
Sbjct: 850 IYEKLGVLIGEMQSVGYI 867
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 70/149 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ ++ + ++ + C D S+ +L +C ++G Q
Sbjct: 147 VSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGL 206
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G G+ L+ + ++C ++DD+ F PEKN +SW+ +I+ V + E
Sbjct: 207 VVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEG 266
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALM 160
L+LFK+ Q ++ + + S ++ A +
Sbjct: 267 LELFKEMQGVGVGVSQSIYASLFRSCAAL 295
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 16/161 (9%)
Query: 12 IPWNLLLKACIKAKDYE--------MVHELLERIQLCCGFIDSYSICDILNSCLNPILLN 63
+ WN ++ AC + + E M+H +E D ++ +L +C LN
Sbjct: 450 VSWNAIIAACEQNGNEEETLAHFASMIHSRMEP--------DDFTYGSVLKACAGRQALN 501
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G + + K G+ VG L+++ +CG I+ AD T +K +SW IIS
Sbjct: 502 TGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFS 561
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+A F + + T+ + L A + VG
Sbjct: 562 LLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVG 602
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 42 GFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD 101
GF D ++ LN+C + G Q K +S+ V N ++++ +C + +A
Sbjct: 380 GF-DEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEAS 438
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
F ++++SW II+A +G+ E L F + T+ S LKA A
Sbjct: 439 DLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACA 495
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 57/147 (38%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ C++ EL + +Q + + SC L +G + ++
Sbjct: 248 VSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSH 307
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K S VG +++ ++CG++ DA S P+ + S+ II +A
Sbjct: 308 ALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQA 367
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L F+ + T AL A A
Sbjct: 368 LKSFQLLLKTGLGFDEITLSGALNACA 394
Score = 37.7 bits (86), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M R ++S+ N +I+ + CG++D A F PE++ +SW +IS + +G ++
Sbjct: 110 MYLRDVVSY----NSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKS 165
Query: 132 LDLF 135
+D+F
Sbjct: 166 IDVF 169
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 105/411 (25%), Positives = 188/411 (45%), Gaps = 57/411 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSC--LNPILLNVGTQAQ 69
+ W ++ + + E +++Q D ++ ++++C L + +
Sbjct: 241 VAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDI 300
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
A + G + VG+ LI++ S+CG D+A F+ E+N S++ +I HG
Sbjct: 301 AERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAH 360
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
AL LF D N TF L A + GLV + +LF ME+ + + PS +HY+ M
Sbjct: 361 SALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACM 420
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
V+ LGRAG EE L+ +K +P + +W LL + R+HG+ +A+ A ++L +L+P
Sbjct: 421 VDLLGRAGCLEEALDLVK-TMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNG 479
Query: 248 -GMYV-------------------------------GC-WIEIQN-KIYEFVSNEEL--- 270
G Y+ GC W E +N +I++F + +
Sbjct: 480 IGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPR 539
Query: 271 TSEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGM 315
+SE+ L ++ E ++ G+ N + ++ A+A GL+ G
Sbjct: 540 SSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGD 599
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+++K++ +C H+ S I RE++V+D FHHF +G CSC + +
Sbjct: 600 TIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 5/161 (3%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVG 65
+ V ++ L KAC A + ++ ++ + L GF D Y +++ + L
Sbjct: 138 VGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCA 197
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ M++R ++S LI ++ G ++ A F P K+ ++WT +++ +
Sbjct: 198 RKVFDEMSERDVVSWTE----LIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQN 253
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
G P EAL+ F+ Q + T + A A +G V A
Sbjct: 254 GRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHA 294
>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 678
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 178/375 (47%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+ SI +L +C + L +G + Y+ ++ L + + N LI++ ++CG ++ A F
Sbjct: 305 DAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVF 364
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++ +SWT +ISA +G +A+ LF Q + + F S L A + GL+
Sbjct: 365 DQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLD 424
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E F M E I P EH+ MV+ LGRAG +E FIK + P + +W LL
Sbjct: 425 EGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQM-PMEPNERVWGALLS 483
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW------------------ 254
+ RV+ +M + A D+L +L P G YV G W
Sbjct: 484 ACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKM 543
Query: 255 -----IEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV--LNRSLYQTKMK-- 302
E+ N+++ F++ ++ + ++ ++L MKE G+V + +L+ + +
Sbjct: 544 PGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEAGYVPETDSALHDVEEEDK 603
Query: 303 -----------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
A+A +++ G P R+ K++ +CG H A + +S I+ RE+ ++D
Sbjct: 604 ECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNR 663
Query: 352 FHHFKDGKCSCKDAY 366
FHHF +G CSC D +
Sbjct: 664 FHHFYNGVCSCGDYW 678
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y+ +L + L VG Q A + + GL + VGN LI++ +CG + +A
Sbjct: 136 DHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVL 195
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
P ++ +SW +++ +G +AL++ K+ + + T S L A
Sbjct: 196 DQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPA 247
>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
Length = 1740
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 104/379 (27%), Positives = 181/379 (47%), Gaps = 54/379 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+ SI +L +C + L +G + Y+ ++ L + + N LI++ ++CG ++ A F
Sbjct: 1294 DAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVF 1353
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++ +SWT +ISA +G +A+ LF Q + + F S L A + GL+
Sbjct: 1354 DQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLD 1413
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E F M E I P EH+ MV+ LGRAG +E FIK + P + +W LL
Sbjct: 1414 EGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQM-PMEPNERVWGALLS 1472
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW------------------ 254
+ RV+ +M + A D+L +L P G YV G W
Sbjct: 1473 ACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKM 1532
Query: 255 -----IEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFV--LNRSLYQTKMK-- 302
E+ N+++ F++ ++ + ++ ++L + MKE G+V + +L+ + +
Sbjct: 1533 PGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVPETDSALHDVEEEDK 1592
Query: 303 -----------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
A+A +++ G P R+ K++ +CG H A + +S I+ RE+ ++D
Sbjct: 1593 ECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNR 1652
Query: 352 FHHFKDGKCSCKDAYGSQS 370
FHHF +G CSC D + S +
Sbjct: 1653 FHHFYNGVCSCGDYWYSHT 1671
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y+ +L + L VG Q A + + GL + VGN LI++ +CG + +A
Sbjct: 1125 DHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVL 1184
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
P ++ +SW +++ +G +AL++ K+ + + T S L A
Sbjct: 1185 DZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPA 1236
>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
Length = 653
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 115/412 (27%), Positives = 186/412 (45%), Gaps = 67/412 (16%)
Query: 13 PWNLLLKACI---KAKDYEMVHE--LLERIQLCCGFI-DSYSICDILNSCLNPILLNVGT 66
WN +L A K KD +++ LLE GF D ++ +++SC + L G
Sbjct: 247 AWNTMLAAYAQFDKGKDALFLYKNMLLE------GFTPDRFTFSSVVDSCASLGALREGK 300
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
T G +G L+N+ ++CG + DA +F K+ +SW+ +I+A HG
Sbjct: 301 FIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHG 360
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
H EAL+L + + N T S L A + G + E F+ + + + IE EE+
Sbjct: 361 HAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENT 420
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL- 245
++ LGRAG +E E + +P K+ + TLL +VHGD++ K +++ L
Sbjct: 421 VGFIDLLGRAGWLKEA-EHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKAFTKRIVALE 479
Query: 246 --DPGMYV---------GCW-----------------------IEIQNKIYEFV---SNE 268
+PG YV G W IE ++KIYEF ++
Sbjct: 480 PENPGSYVLLNNMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSN 539
Query: 269 ELTSEVSDKLAEIEENMK-ELGFVLN-RSL--------------YQTKMKAVALGLISFP 312
E+ +L + MK E G+V + R + + ++ A+ GLI+ P
Sbjct: 540 PRNLEIRAELERLYSRMKEEEGYVPDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLITSP 599
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G R+IK++ +C H+ + S I R ++V+D FHHF+ G CSC D
Sbjct: 600 PGSTLRIIKNLRVCSDCHTVGKLASKITGRRIIVRDGTRFHHFEGGICSCGD 651
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 1/160 (0%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
+ DV + WN ++ A + L R+ D Y+ IL +C +P L G
Sbjct: 141 VKDV-VSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGR 199
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+T RG A+ N LI++ +RCG ++ A F S +K +W +++A
Sbjct: 200 MLHVRITARGFDRDFAMQNNLISMYTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFD 259
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
+AL L+K+ + + TF S + + A +G + E
Sbjct: 260 KGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREG 299
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
W++L++ ++ Y+ E+ + + ID+Y++ +L +C + + G Q
Sbjct: 14 FSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTKLLDVEEGRMVQRK 73
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE-KNSLSWTFIISARVNHGHPSE 130
+ G V LI++ ++CG +++A+ F+S ++ +S T +I A S+
Sbjct: 74 AEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAYCGSLKDSK 133
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYH 178
+L L D + + ++ + + AY L G +A+ LF M + H
Sbjct: 134 SLFLTMDVK------DVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGH 175
>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
Length = 929
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/362 (28%), Positives = 176/362 (48%), Gaps = 46/362 (12%)
Query: 4 CSLISDVE----IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP 59
CS+ S++ + WN ++ AC ++ +LL + L +++ ++ L +C
Sbjct: 554 CSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKL 613
Query: 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
L G + ++ + GL + + N LI++ RCG I + F P+++ +SW +I
Sbjct: 614 AALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMI 673
Query: 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179
S HG +A++LF+ + N TF + L A + GL+ E ++ F M+ Y +
Sbjct: 674 SVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAM 733
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239
+P+ E Y+ MV+ L RAG F E LEFI+ + P + +W +LL + R+H + LA+YA
Sbjct: 734 DPAVEQYACMVDLLSRAGQFNETLEFIEKM-PFEPNAAVWGSLLGACRIHCNPDLAEYAA 792
Query: 240 DKLLELDP---GMYV-------------------------------GC-WIEIQNKIYEF 264
L EL+P G YV GC WIE++ K++ F
Sbjct: 793 RYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSF 852
Query: 265 V---SNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIK 321
V ++ L ++S K +++ + E F L ++ A+A GLIS G P R+IK
Sbjct: 853 VVGDTSHPLMEQISGKDGKLDVDEDEKEFSL---CGHSEKIALAFGLISTTXGTPLRIIK 909
Query: 322 SV 323
++
Sbjct: 910 NL 911
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN L+ + D + E +R+ ++ +I L +C L +G + Y
Sbjct: 465 ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGY 524
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + VG+ LI++ S C ++ A F ++ + W IISA G A
Sbjct: 525 VLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNA 584
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
LDL ++ +N T SAL A
Sbjct: 585 LDLLREMNLSNVEVNTVTMVSALPA 609
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 89/216 (41%), Gaps = 11/216 (5%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + + +C VG YM G + V ++++ +CG++D A F
Sbjct: 189 DHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFF 248
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ K+ W ++S + G +AL D + + T+ + + YA G
Sbjct: 249 EEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFE 308
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
EA + FL M + +P+ ++ ++ + G E L + +V + P ++ +
Sbjct: 309 EASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKP---NSITI 365
Query: 225 SSRVHG--DMKLAKYALD------KLLELDPGMYVG 252
+S V ++ L ++ + K+ ELD + VG
Sbjct: 366 ASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVG 401
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 83/217 (38%), Gaps = 38/217 (17%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTK-RGLISHPAVGNCLININSRCGKIDDADLA 103
+S +I +++C N LL G + Y K L S VGN L++ ++C ++ A
Sbjct: 361 NSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRK 420
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F + + +SW +++ G EA++L + +++ + T+ + + G
Sbjct: 421 FGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDG 480
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
A F M + ++P+ S + A G+ R L
Sbjct: 481 KAALEFFQRMHSM-GMDPNTTTISGALAACGQV-----------------------RNLK 516
Query: 224 LSSRVHGDMKLAKYALDKLLELDPG-------MYVGC 253
L +HG Y L +EL G MY GC
Sbjct: 517 LGKEIHG------YVLRNHIELSTGVGSALISMYSGC 547
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
IL C L +G Q A + G+ +G+ L+ + + G ++DA F E+N
Sbjct: 95 ILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERN 154
Query: 112 SLSWTFIISARVNHGHPSEALDLF 135
SWT I+ G E + LF
Sbjct: 155 VFSWTAIMEMYCGLGDYEETIKLF 178
>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
Length = 745
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 115/412 (27%), Positives = 186/412 (45%), Gaps = 67/412 (16%)
Query: 13 PWNLLLKACI---KAKDYEMVHE--LLERIQLCCGFI-DSYSICDILNSCLNPILLNVGT 66
WN +L A K KD +++ LLE GF D ++ +++SC + L G
Sbjct: 339 AWNTMLAAYAQFDKGKDALFLYKNMLLE------GFTPDRFTFSSVVDSCASLGALREGK 392
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
T G +G L+N+ ++CG + DA +F K+ +SW+ +I+A HG
Sbjct: 393 FIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHG 452
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
H EAL+L + + N T S L A + G + E F+ + + + IE EE+
Sbjct: 453 HAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENT 512
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL- 245
++ LGRAG +E E + +P K+ + TLL +VHGD++ K +++ L
Sbjct: 513 VGFIDLLGRAGWLKEA-EHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKALTKRIVALE 571
Query: 246 --DPGMYV---------GCW-----------------------IEIQNKIYEFV---SNE 268
+PG YV G W IE ++KIYEF ++
Sbjct: 572 PENPGSYVLLNNMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSN 631
Query: 269 ELTSEVSDKLAEIEENMK-ELGFVLN-RSL--------------YQTKMKAVALGLISFP 312
E+ +L + MK E G+V + R + + ++ A+ GLI+ P
Sbjct: 632 PRNLEIRAELERLYSRMKEEEGYVPDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLITSP 691
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G R+IK++ +C H+ + S I R ++V+D FHHF+ G CSC D
Sbjct: 692 PGSTLRIIKNLRVCSDCHTVGKLASKITGRRIIVRDGTRFHHFEGGICSCGD 743
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 1/160 (0%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
+ DV + WN ++ A + L R+ D Y+ IL +C +P L G
Sbjct: 233 VKDV-VSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGR 291
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+T RG A+ N LI++ +RCG ++ A F S +K +W +++A
Sbjct: 292 MLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFD 351
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
+AL L+K+ + + TF S + + A +G + E
Sbjct: 352 KGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREG 391
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+++ IL +C +P L G ++ + + +V N LI + ++CG + D+ F
Sbjct: 169 DAFTYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLF 228
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
+ K+ +SW +I+A +GH +A LF
Sbjct: 229 LTMDVKDVVSWNAMIAAYTLYGHDKDAFSLF 259
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
W++L++ ++ Y+ E+ + + ID+Y++ +L +C + + G Q
Sbjct: 34 FSWSILVECYVQNAMYQEALEVYKEMVRKEISIDAYTLSSVLAACTKLLDVEEGRMVQRK 93
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE-KNSLSWTFIISARVNHGHPSE 130
+ G V LI++ ++CG +++A+ F+S ++ +S T +I A V HG
Sbjct: 94 AEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDL 153
Query: 131 ALDLFKDKQWRYTSMNPTTFRSA 153
ALD + + R + P F A
Sbjct: 154 ALDTY--WKMRSQGLEPDAFTYA 174
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 74/172 (43%), Gaps = 6/172 (3%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
+ N +I + +C +DA F ++N+ SW+ ++ V + EAL+++K+ +
Sbjct: 4 LANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVRKE 63
Query: 143 TSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV 202
S++ T S L A + V E R+ E E + ++ + G EE
Sbjct: 64 ISIDAYTLSSVLAACTKLLDVEEG-RMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEA 122
Query: 203 LEFIKGIVPGKLCPLIWRTLLLSSRV-HG--DMKLAKYALDKLLELDPGMYV 251
+ + G + +I T ++ + V HG D+ L Y + L+P +
Sbjct: 123 ESVFRSM--GAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFT 172
>gi|296089822|emb|CBI39641.3| unnamed protein product [Vitis vinifera]
Length = 251
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 141/272 (51%), Gaps = 42/272 (15%)
Query: 115 WTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174
W II+ HG EAL +F + + + TF L A + G V E +F SM+
Sbjct: 2 WNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMK 61
Query: 175 EVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKL 234
Y +EP EHY+ MV+ LGRAG+ + ++ I+ + P + +IW LL + R H +M L
Sbjct: 62 SKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKM-PVEADAIIWGALLGACRTHMNMNL 120
Query: 235 AKYALDKLLELDPGMYVGCWIEIQNKIYEFVS-----NEELTSEVSDKLAEIEENMKELG 289
A E++ +++ F + EL+S + L +++ ++E G
Sbjct: 121 A--------------------EVEKRVHMFTGGVSTKHPELSS-IMKMLEKLDGMLREAG 159
Query: 290 ------FVLN--------RSL-YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACR 334
FVL+ RSL + ++ AVA GL+ P GMP RV+K++ +CG HSA +
Sbjct: 160 YYPDSSFVLHDVDEEEKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCGDCHSAIK 219
Query: 335 FMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++ I RE++++D FHHFKDG CSC+D +
Sbjct: 220 LIAKITGREIILRDANRFHHFKDGFCSCRDYW 251
>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 638
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/390 (27%), Positives = 177/390 (45%), Gaps = 56/390 (14%)
Query: 32 ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91
+L ++Q+ +S + +L + LN G Q +++ + G S+ + N LI++
Sbjct: 250 KLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMY 309
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK-DKQWRYTSMNPTTF 150
S+CG + A F S PE+ +SW ++ HG E L+LFK ++ + T+
Sbjct: 310 SKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITY 369
Query: 151 RSALKAYALMGLVGEAYRLFLSMEEVYH-IEPSEEHYSIMVEALGRAGMFEEVLEFIKGI 209
+ L + L +F +M IEP HY +V+ LGRAG EE +FIK +
Sbjct: 370 LAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKM 429
Query: 210 VPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMYV--------------- 251
P IW +LL S RVH D+++ KLLEL+P G YV
Sbjct: 430 -PFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDM 488
Query: 252 -----------------GCWIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFV 291
W+E+ ++ F +++ EV++K+ E+ KE G+V
Sbjct: 489 RNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYV 548
Query: 292 LNRS---------------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFM 336
+ S L ++ A+A GLI+ P G RVIK++ +C HS +F+
Sbjct: 549 PDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFV 608
Query: 337 STIIERELVVKDPGSFHHFKDGKCSCKDAY 366
S + R ++++D FH+ G CSC D +
Sbjct: 609 SRLYARTVILRDKNRFHNIVGGVCSCGDYW 638
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 40/198 (20%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ IL SC + G Q + KR SH VG+ L+++ ++ G+I DA F
Sbjct: 162 NHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVF 221
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA-------- 156
PE++ ++ T IIS G EAL LF+ Q + N T+ S L A
Sbjct: 222 HCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALN 281
Query: 157 ---------------------------YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
Y+ G V A R+F SM E I ++ M
Sbjct: 282 HGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCIS-----WNAM 336
Query: 190 VEALGRAGMFEEVLEFIK 207
+ + GM EVLE K
Sbjct: 337 LVGYSKHGMAREVLELFK 354
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
ILN C++ + G + +M K + + LI + ++C + DA F P++N
Sbjct: 68 ILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRN 127
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA-YALMGL 162
+SWT +ISA G EAL+LF + T N TF + L + Y +G
Sbjct: 128 VVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGF 179
>gi|388511541|gb|AFK43832.1| unknown [Lotus japonicus]
Length = 295
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 142/297 (47%), Gaps = 33/297 (11%)
Query: 99 DADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
DA F KN SW ++ N +AL LF+ + T + L A
Sbjct: 3 DARRVFDHMSSKNVESWHLMLRGYANSTMGDDALRLFEQMNELGLEITSETLLAVLSACG 62
Query: 159 LMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLI 218
V +A+ F SM+ Y IEP EHY +++ LG++G +E EFI+ + P + +
Sbjct: 63 SAEAVEDAFLHFDSMKSKYGIEPGVEHYMGLLDVLGQSGYLKEAEEFIEKL-PFEPTLTV 121
Query: 219 WRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGCWIEI--------------QNKIYEF 264
W TL +R+HGD+ L + + ++ LDP V I +N+I E+
Sbjct: 122 WETLKNYARIHGDIDLEDHVEELMVNLDPSKAVANKIPTPPPKKYNHISMLDGRNRIIEY 181
Query: 265 VSNEELTSEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLI 309
N L + A I MK+ G+V + LY ++ A+A GLI
Sbjct: 182 -KNPSLYKDDEKLKALI--GMKDAGYVPDTRYVLHDIDQEAKGQALLYHSERLAIAYGLI 238
Query: 310 SFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
S P P R+IK++ +CG H+A + MS I+ REL+V+D FHHFKDGKCSC D +
Sbjct: 239 STPPRTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 295
>gi|356565103|ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g47530-like [Glycine max]
Length = 515
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/412 (25%), Positives = 184/412 (44%), Gaps = 59/412 (14%)
Query: 12 IPWNLLLKACIK---AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQA 68
+ WN+++ CI+ +D + ++L+ C D + +L +C + L G +
Sbjct: 106 VAWNVMISCCIRNNRTRDALSLFDVLQNSSYKCE-PDDVTCLLLLQACAHLYALEFGERI 164
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
YM + G + N LI++ SRCG +D A FK T KN +SW+ +IS +G+
Sbjct: 165 HGYMMEHGYGGALNLSNALISMYSRCGCLDKAXEVFKGTGNKNVVSWSAMISGLAMNGYG 224
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS-MEEVYHIEPSEEHYS 187
EA++ F++ + T L A + G+V E F M + + P+ HY
Sbjct: 225 REAIESFEEMLRIGIRPDDQTLTGVLSACSYSGMVDEGMMSFFDRMSREFGVTPNVHHYG 284
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL-- 245
MV+ LG AG+ ++ + I +V K WRTLL + R+HG + L + + L+EL
Sbjct: 285 CMVDLLGHAGLLDKAXQLIMSMVE-KPDSTTWRTLLGACRIHGHVTLGERVIGHLIELKA 343
Query: 246 -DPGMYV---------GCW-----------------------IEIQNKIYEFVSNE---E 269
+ G +V G W IE++ ++EFV ++
Sbjct: 344 QEAGDHVLLLNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTIELKGVVHEFVVDDVSHT 403
Query: 270 LTSEVSDKLAEIEENMKELGFVLNRSLYQTKMK---------------AVALGLISFPHG 314
E+ + L EI ++ G+V+ S KM A+A G+++ P G
Sbjct: 404 RNHEIYETLDEINHQLRIAGYVVELSSELHKMDDKEKGYVLSHHSEKLAIAFGVLATPPG 463
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV ++ +C + + S + +++++D FHHF+ G CSC + +
Sbjct: 464 TTLRVANNLRICVDCFNFLKHFSGVYNGDVILRDHNRFHHFRGGCCSCSNYW 515
>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
Length = 739
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/374 (26%), Positives = 170/374 (45%), Gaps = 54/374 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W +L A + E +L + C +++ + +L++C + L G Q
Sbjct: 349 VSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGR 408
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G VGN L+ + +CG ++DA AF+ E++ +SW +I+ HG EA
Sbjct: 409 LIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEA 468
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L++F + T + T L A + GLV + F SM + + EHY+ M++
Sbjct: 469 LEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMID 528
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG E + +K + P + +W LL +SR+H + +L + A +K+ EL+P G
Sbjct: 529 LLGRAGRLAEAHDLMKDM-PFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAG 587
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEELTSEVSD 276
MYV WIE+QNK++ F + + + E
Sbjct: 588 MYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEK 647
Query: 277 KLAEIEE---NMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
A +E+ MK+ G+V + Y ++ AVA G+++ P G P R
Sbjct: 648 IYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIR 707
Query: 319 VIKSVGMCGYSHSA 332
VIK++ +CG H+A
Sbjct: 708 VIKNLRVCGDCHNA 721
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 11/162 (6%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N L++ + GK+ +A F P ++ +SW ++S G EA LF R
Sbjct: 197 NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR--- 253
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
+ T+ + + YA G++ EA R+F +M E + ++ MV A + M +E E
Sbjct: 254 -DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQRRMMDEAKE 307
Query: 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
++P + W T+L G ++ AK D + + D
Sbjct: 308 LFN-MMPCRNVA-SWNTMLTGYAQAGMLEEAKAVFDTMPQKD 347
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
+++ ++ G +++A F + PE+N++SW +++A + EA +LF R
Sbjct: 259 TAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR--- 315
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204
N ++ + L YA G++ EA +F +M + + ++ M+ A + G EE L+
Sbjct: 316 -NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS-----WAAMLAAYSQGGCSEETLQ 369
Query: 205 FI 206
Sbjct: 370 LF 371
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 17/163 (10%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDK-QWRYT 143
N +I+ ++ G + A F PEK+++SW +++A V +G EA LF + +W
Sbjct: 135 NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVI 194
Query: 144 SMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE--HYSIMVEALGRAGMFEE 201
S N + + Y G + EA LF M P + ++IMV R G E
Sbjct: 195 SWN-----ALMSGYVQWGKMSEARELFDRM-------PGRDVVSWNIMVSGYARRGDMVE 242
Query: 202 VLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+ W ++ +G ++ A+ D + E
Sbjct: 243 ARRLFDAAPVRDV--FTWTAVVSGYAQNGMLEEARRVFDAMPE 283
>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
lyrata]
gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
lyrata]
Length = 1112
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 134/269 (49%), Gaps = 3/269 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N L + D+E ELL I + +++ +L+ N L G Q +
Sbjct: 440 VSYNTFLDGTCRNLDFEHAFELLSEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQ 499
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL + V N LI++ S+CG ID A F +N +SWT +I+ HG
Sbjct: 500 VLKLGLSCNQPVCNALISMYSKCGSIDTASRVFSLMDNRNVISWTSMITGFAKHGFAERV 559
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+ F N T+ + L A + +GLV E +R F SM E + I+P EHY+ MV+
Sbjct: 560 LETFNQMTKEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVD 619
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYV 251
L RAG+ + EFI +P + L+WRT L + RVH + +L K A K+LE DP
Sbjct: 620 LLCRAGLLTDAFEFIN-TMPFQADVLVWRTFLGACRVHSNTELGKLAARKILEFDPN-EP 677
Query: 252 GCWIEIQNKIYEFVSNEELTSEVSDKLAE 280
+I++ N IY E ++E+ K+ E
Sbjct: 678 AAYIQLSN-IYASAGKWEESTEMRRKMKE 705
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 11/152 (7%)
Query: 12 IPWNLLLKACIKAK-DYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQ 69
+ W L++ C++ E + L+ + GF D +++ + ++C L++G Q
Sbjct: 235 VTWTLMITRCMQMGFPREAIRFFLDMV--LSGFESDKFTLSSVFSACAELENLSLGRQLH 292
Query: 70 AYMTKRGLISHPAVGNCLININSRC---GKIDDADLAFKSTPEKNSLSWTFIISARV-NH 125
++ + GL V L+++ ++C G +DD F + + +SWT +I+ + N
Sbjct: 293 SWAIRSGLADD--VECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGYMQNC 350
Query: 126 GHPSEALDLFKDKQWR-YTSMNPTTFRSALKA 156
+EA++LF + + + N TF SA KA
Sbjct: 351 NLATEAINLFSEMITQGHVEPNHFTFSSAFKA 382
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ +C N VG Q + KRGL S+ +V N +I++ +C +++DA AF
Sbjct: 372 NHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASNSSVSNSVISMFVKCDRMEDARTAF 431
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+S EKN +S+ + + A +L + R ++ TF S L A +G
Sbjct: 432 ESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAERELGVSAFTFASLLSGVANVG 488
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 12 IPWNLLLKACI--KAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQA 68
+ W+ ++ AC ++++ + +E +++ G + + Y ++ +C N + VG
Sbjct: 132 VSWSAMM-ACFGNNGREFDAIKLFVEFLEM--GLVPNDYCYTAVIRACSNSDFVGVGRVI 188
Query: 69 QAYMTKRG-LISHPAVGNCLININSRC-GKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
++ K G S VG LI++ + ++A F E N ++WT +I+ + G
Sbjct: 189 LGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMG 248
Query: 127 HPSEALDLFKD 137
P EA+ F D
Sbjct: 249 FPREAIRFFLD 259
>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
Length = 864
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/397 (26%), Positives = 171/397 (43%), Gaps = 54/397 (13%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
S+ + W+ ++ ++ K+YE L R Q + +++ ++ +C N L
Sbjct: 214 SMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIE 273
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Q A + K G S+ V + +++ ++CG + ++ + F EKN W IIS
Sbjct: 274 GKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAK 333
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
H P E + LF+ Q N TF S L GLV E R F M Y + P+
Sbjct: 334 HARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVV 393
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
HYS MV+ LGRAG+ E E IK I P IW +LL S RV+ +++LA+ A +KL E
Sbjct: 394 HYSCMVDILGRAGLLSEAYELIKSI-PFDPTASIWGSLLASCRVYKNLELAEVAAEKLFE 452
Query: 245 LDP---GMYV--------------------------------GCWIEIQNKIYEFVSNEE 269
L+P G +V WI+I++K++ F E
Sbjct: 453 LEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGES 512
Query: 270 ---LTSEVSDKLAEIEENMKELGF--VLNRSLYQTKMK-------------AVALGLISF 311
E+ L + ++ G+ + L+ ++ A+ GL+
Sbjct: 513 GHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCL 572
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
P P R++K++ +C H + S R ++V+D
Sbjct: 573 PESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRD 609
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 40/154 (25%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF---KDKQWR 141
N LIN S+CG ++ A F E++ +SW +I + SEALD+F +++ ++
Sbjct: 92 NVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFK 151
Query: 142 YTSMNPTTFRSA--------------------------------LKAYALMGLVGEAYRL 169
++ ++ SA L YA G++ +A ++
Sbjct: 152 FSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQV 211
Query: 170 FLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVL 203
F SM+ + S +S MV + +EE L
Sbjct: 212 FESMQ-----DKSSVTWSSMVAGYVQNKNYEEAL 240
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 136/277 (49%), Gaps = 10/277 (3%)
Query: 13 PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
PWN L+ ++ K + L +Q D ++ ++L +C L +G Y+
Sbjct: 327 PWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYI 386
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K L+ A+G LI++ ++CG I+ A FK PEKN+L+WT +I NHGH +EA+
Sbjct: 387 EKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAI 446
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA 192
+ F+ + TF L A GLV E F ME YH+E +HYS M++
Sbjct: 447 EHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDL 506
Query: 193 LGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVG 252
LGRAG +E + + +P + ++W + + R+ G++ L + A KL+E+DP
Sbjct: 507 LGRAGHLDEAEQLVN-TMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPS---- 561
Query: 253 CWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELG 289
+ IY ++N + + K ++ M+ LG
Sbjct: 562 -----DSGIYVLLANMYAEANMRKKADKVRAMMRHLG 593
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L +C G A A++ + GL S V N + S G ++DA F +P ++
Sbjct: 131 LLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRD 190
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
+SW +I V G+P+EAL+LF WR +
Sbjct: 191 LVSWNTLIGGYVRRGNPAEALELF----WRMVA 219
>gi|125528180|gb|EAY76294.1| hypothetical protein OsI_04228 [Oryza sativa Indica Group]
Length = 646
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 188/412 (45%), Gaps = 60/412 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF---IDSYSICDILNSCLNPILLNVGTQA 68
+ WN ++ A + EL R++ G D+ ++ +L+SC + VG
Sbjct: 234 VSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGARRVGLDV 293
Query: 69 QAYM--TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ Y+ T G + + N LIN ++RCG + A F PE++ +SWT +I HG
Sbjct: 294 EQYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTALIIGYGMHG 353
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
A+DLF+ T+ + L A + G+ E + F +ME Y + P EHY
Sbjct: 354 QGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHY 413
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+ MV+ LGRAG +E E I + P +W LL + ++H ++++ + A ++++ L+
Sbjct: 414 TCMVDLLGRAGRLDEARELIASM-PMAADGAVWGALLGACKIHKNVEMGEEAFERVVSLE 472
Query: 247 P---GMYV-------------------------------GC-WIEIQNKIYEFVSNEE-- 269
P G YV GC ++E + K++ F++++
Sbjct: 473 PANVGYYVLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHKGKVHLFMADDHSH 532
Query: 270 -LTSEVSDKLAEIEENMKEL--GFVLNRSL--------------YQTKMKAVALGLISFP 312
+ + + E+E +KE G V+ + ++ AVA GL++
Sbjct: 533 PQARRIYELVVELERMVKEKTGGDVVEERAEKAVAEAAAVPLVGFHSEKLAVAFGLLNTE 592
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G VIK++ +CG HS + +S + R +V+D FH F++G CSC+D
Sbjct: 593 AGSEIVVIKNLRVCGDCHSFLKTISELTNRAFLVRDASRFHRFENGACSCRD 644
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPIL-LNVGTQAQAY 71
+N L+ C L R+++ G D+ ++ L P+ L + Q A
Sbjct: 134 FNSLISGCALHGVPAGCFSLFRRMRVAAGVRFDAVTLL-----ALVPVAPLGIVPQLHAL 188
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLA---FKSTPE--KNSLSWTFIISARVNHG 126
+ GL ++ +V NCL+++ +R G A LA F+ P ++ +SW +ISA +G
Sbjct: 189 AARSGLAANTSVANCLVSVYARGGG-GGASLARQVFEEMPRASRDLVSWNAVISAHAQNG 247
Query: 127 HPSEALDLFK 136
EA++L++
Sbjct: 248 LAVEAVELYR 257
>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
Length = 653
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 174/374 (46%), Gaps = 56/374 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
ID S+ +++C + Q + GL + VG+ L+++ ++CG ID+A
Sbjct: 277 IDEVSLTGAISACAQLGAVRRAVWIQEIADRSGLGRNVVVGSGLVDMYAKCGLIDEACRV 336
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY-TSMNPTTFRSALKAYALMGL 162
F+ EKN +++ +I +HG ++A+ LF D R N TF L A + G+
Sbjct: 337 FEGMQEKNVYTYSSMIVGLASHGRANDAIALFNDMVRRADVEPNHVTFIGVLTACSHAGM 396
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V E F M++ Y I PS +HY+ MV+ LGRAG+ E L+ +K + + +W L
Sbjct: 397 VKEGRYYFAQMKDRYGILPSADHYTCMVDLLGRAGLVIEALDLVKSMTV-EPHGGVWGAL 455
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCWIEIQNK---------- 260
L + R+HG+ K+AK A L +L+P G YV G W E+
Sbjct: 456 LGACRIHGNTKVAKVAAQHLFKLEPEGIGNYVLLSNTLASAGEWDEVSKVRKLMRIRGLK 515
Query: 261 --------------IYEFVSNEEL---TSEVSDKLAEIEENMKELGF--VLNRSLY---- 297
+++F + + E+ L E+ +K G+ VL+ +Y
Sbjct: 516 KDPAVSSFEGRDGLVHQFFAGDNTHPWMHEIKKTLLELRARLKLAGYVPVLSSVVYNVSD 575
Query: 298 ---------QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
++ A++ GL++ R++K++ +C H R +S + E++V+D
Sbjct: 576 EEKERLLMGHSEKLALSFGLLTLESRSSIRIVKNLRICEDCHLFIRLVSKVEPIEIIVRD 635
Query: 349 PGSFHHFKDGKCSC 362
FHHF+DG+CSC
Sbjct: 636 NMRFHHFRDGECSC 649
>gi|115440727|ref|NP_001044643.1| Os01g0819800 [Oryza sativa Japonica Group]
gi|21104789|dbj|BAB93376.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113534174|dbj|BAF06557.1| Os01g0819800 [Oryza sativa Japonica Group]
Length = 646
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 188/412 (45%), Gaps = 60/412 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF---IDSYSICDILNSCLNPILLNVGTQA 68
+ WN ++ A + EL R++ G D+ ++ +L+SC + VG
Sbjct: 234 VSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGARRVGLDV 293
Query: 69 QAYM--TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ Y+ T G + + N LIN ++RCG + A F PE++ +SWT +I HG
Sbjct: 294 ERYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTTLIIGYGMHG 353
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
A+DLF+ T+ + L A + G+ E + F +ME Y + P EHY
Sbjct: 354 QGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHY 413
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+ MV+ LGRAG +E E I + P +W LL + ++H ++++ + A ++++ L+
Sbjct: 414 TCMVDLLGRAGRLDEARELIASM-PMAADGAVWGALLGACKIHKNVEMGEEAFERVVSLE 472
Query: 247 P---GMYV-------------------------------GC-WIEIQNKIYEFVSNEE-- 269
P G YV GC ++E + K++ F++++
Sbjct: 473 PANVGYYVLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHKGKVHLFMADDHSH 532
Query: 270 -LTSEVSDKLAEIEENMKEL--GFVLNRSL--------------YQTKMKAVALGLISFP 312
+ + + E+E +KE G V+ + ++ AVA GL++
Sbjct: 533 PQARRIYELVVELERMVKEKTGGDVVEERAEKAVAEAAAVPLVGFHSEKLAVAFGLLNTE 592
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G VIK++ +CG HS + +S + R +V+D FH F++G CSC+D
Sbjct: 593 AGSEIVVIKNLRVCGDCHSFLKTISELTNRAFLVRDASRFHRFENGACSCRD 644
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPIL-LNVGTQAQAY 71
+N L+ C L R+++ G D+ ++ L P+ L + Q A
Sbjct: 134 FNSLISGCALHGVPAGCFSLFRRMRVAAGVRFDAVTLL-----ALVPVAPLGIVPQLHAL 188
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLA---FKSTPE--KNSLSWTFIISARVNHG 126
+ GL ++ +V NCL+++ +R G A LA F+ P ++ +SW +ISA +G
Sbjct: 189 AARSGLAANTSVANCLVSVYARGGG-GGASLARQVFEEMPRASRDLVSWNAVISAHAQNG 247
Query: 127 HPSEALDLFK 136
EA++L++
Sbjct: 248 LAVEAVELYR 257
>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15130-like [Glycine max]
Length = 586
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/415 (26%), Positives = 198/415 (47%), Gaps = 62/415 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ L+ + + + +L ++ +D + + I+ + LL G Q AY
Sbjct: 174 MSWSTLILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAY 233
Query: 72 MTK--RGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
K GL+ +V N ++++ +CG +AD F+ E+N +SWT +I+ HG +
Sbjct: 234 TIKVPYGLLE-MSVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGN 292
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
+A++LF + Q + T+ + L A + GL+ E + F + I+P EHY+ M
Sbjct: 293 KAVELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACM 352
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---D 246
V+ LGR G +E I+ + P K IW+TLL R+HGD+++ K + LL +
Sbjct: 353 VDLLGRGGRLKEAKNLIEKM-PLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNN 411
Query: 247 PGMYV--------------------------------GCWIEIQNKIYEFVSNE---ELT 271
P YV W+E+ +I+ F + + L
Sbjct: 412 PANYVMVSNMYAHAGYWKESEKIRETLKRKGLKKEAGRSWVEMDKEIHIFYNGDGMHPLI 471
Query: 272 SEVSDKLAEIEENMK-ELGFV--LNRSLY----QTKMKA-------VALGLISFPHGMP- 316
E+ + L E+E+ +K E+G+V +N SL+ ++KM++ +A+GL+ G+
Sbjct: 472 EEIHEVLKEMEKRVKEEMGYVHSINFSLHDVEEESKMESLRVHSEKLAIGLVLVRRGLKL 531
Query: 317 -----TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+ K++ +CG H+ + +S +++ VV+D FH F++G CSC D +
Sbjct: 532 KGERVIRIFKNLRVCGDCHAFIKGLSKVLKIAFVVRDANRFHRFENGLCSCGDYW 586
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 67/129 (51%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S + ILN C LL+ G Q + K G VGN +I++ S+CG + +A F
Sbjct: 3 ESRLLNKILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVF 62
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ P +N +SW +I+ N + EAL+LF++ + + + T+ S+LKA + G
Sbjct: 63 NTLPVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAG 122
Query: 165 EAYRLFLSM 173
E ++ ++
Sbjct: 123 EGMQIHAAL 131
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 68/160 (42%), Gaps = 2/160 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ ++ E L ++ D Y+ L +C G Q A
Sbjct: 71 ISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQIHAA 130
Query: 72 MTKRGL--ISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ + G ++ AV L+++ +C ++ +A F EK+ +SW+ +I +
Sbjct: 131 LIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQEDNLK 190
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
EA+DLF++ + M+ S + +A L+ + ++
Sbjct: 191 EAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQM 230
>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 666
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 108/390 (27%), Positives = 176/390 (45%), Gaps = 56/390 (14%)
Query: 32 ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91
+L ++Q+ +S + +L + LN G Q +++ + G S+ + N LI++
Sbjct: 278 KLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMY 337
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK-DKQWRYTSMNPTTF 150
S+CG + A F S PE+ +SW ++ HG E L+LFK ++ + T+
Sbjct: 338 SKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITY 397
Query: 151 RSALKAYALMGLVGEAYRLFLSMEEVYH-IEPSEEHYSIMVEALGRAGMFEEVLEFIKGI 209
+ L + L +F +M IEP HY +V+ LGRAG EE +FIK +
Sbjct: 398 LAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKM 457
Query: 210 VPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMYV--------------- 251
P IW +LL S RVH D+++ KLLEL+P G YV
Sbjct: 458 -PFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDM 516
Query: 252 -----------------GCWIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFV 291
W+E+ ++ F +++ EV+ K+ E+ KE G+V
Sbjct: 517 RNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYV 576
Query: 292 LNRS---------------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFM 336
+ S L ++ A+A GLI+ P G RVIK++ +C HS +F+
Sbjct: 577 PDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFV 636
Query: 337 STIIERELVVKDPGSFHHFKDGKCSCKDAY 366
S + R ++++D FH+ G CSC D +
Sbjct: 637 SRLYARTVILRDKNRFHNIVGGVCSCGDYW 666
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 40/198 (20%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ IL SC + G Q + KR SH VG+ L+++ ++ G+I DA F
Sbjct: 190 NHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVF 249
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA-------- 156
PE++ ++ T IIS G EAL LF+ Q + N T+ S L A
Sbjct: 250 HCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALN 309
Query: 157 ---------------------------YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
Y+ G V A R+F SM E I ++ M
Sbjct: 310 HGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCIS-----WNAM 364
Query: 190 VEALGRAGMFEEVLEFIK 207
+ + GM EVLE K
Sbjct: 365 LVGYSKHGMAREVLELFK 382
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
ILN C++ + G + +M K + + LI + ++C + DA F P+KN
Sbjct: 96 ILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKN 155
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA-YALMGL 162
+SWT +ISA G EAL+LF + T N TF + L + Y +G
Sbjct: 156 VVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGF 207
>gi|125595828|gb|EAZ35608.1| hypothetical protein OsJ_19898 [Oryza sativa Japonica Group]
Length = 602
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 188/412 (45%), Gaps = 60/412 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF---IDSYSICDILNSCLNPILLNVGTQA 68
+ WN ++ A + EL R++ G D+ ++ +L+SC + VG
Sbjct: 190 VSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGARRVGLDV 249
Query: 69 QAYM--TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ Y+ T G + + N LIN ++RCG + A F PE++ +SWT +I HG
Sbjct: 250 ERYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTTLIIGYGMHG 309
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
A+DLF+ T+ + L A + G+ E + F +ME Y + P EHY
Sbjct: 310 QGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHY 369
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+ MV+ LGRAG +E E I + P +W LL + ++H ++++ + A ++++ L+
Sbjct: 370 TCMVDLLGRAGRLDEARELIASM-PMAADGAVWGALLGACKIHKNVEMGEEAFERVVSLE 428
Query: 247 P---GMYV-------------------------------GC-WIEIQNKIYEFVSNEE-- 269
P G YV GC ++E + K++ F++++
Sbjct: 429 PANVGYYVLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHKGKVHLFMADDHSH 488
Query: 270 -LTSEVSDKLAEIEENMKEL--GFVLNRSL--------------YQTKMKAVALGLISFP 312
+ + + E+E +KE G V+ + ++ AVA GL++
Sbjct: 489 PQARRIYELVVELERMVKEKTGGDVVEERAEKAVAEAAAVPLVGFHSEKLAVAFGLLNTE 548
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G VIK++ +CG HS + +S + R +V+D FH F++G CSC+D
Sbjct: 549 AGSEIVVIKNLRVCGDCHSFLKTISELTNRAFLVRDASRFHRFENGACSCRD 600
>gi|356503769|ref|XP_003520676.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g03800-like [Glycine max]
Length = 874
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/383 (26%), Positives = 170/383 (44%), Gaps = 66/383 (17%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D + +L C L++G Q ++ K GL + VGN ++++ +CG +DDA
Sbjct: 498 MDEVAAASMLGLCGTIGHLDMGKQIHCHVIKCGLGFNLEVGNAVVSMYFKCGSVDDAMKV 557
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAY--ALMG 161
F P + ++W +IS + H AL+++ + N TF + AY +
Sbjct: 558 FGDMPCTDIVTWNTLISGNLMHRQGDRALEIWVEMLGEGIKPNQVTFVLIISAYRQTNLN 617
Query: 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221
LV + LF SM VY IEP+ HY+ + LG G+ +E LE I + P + L+WR
Sbjct: 618 LVDDCRNLFNSMRTVYQIEPTSRHYASFISVLGHWGLLQEALETINNM-PFQPSALVWRV 676
Query: 222 LLLSSRVHGDMKLAKYALDKLLEL---DPGMYV--------------------------- 251
LL R+H + + K+A +L L DP ++
Sbjct: 677 LLDGCRLHKNELIGKWAAQNILALEPKDPSTFILVSNLYSASGRWDRSEMVREDMREKGF 736
Query: 252 -----GCWIEIQNKIYEFVSNEELTSEVSD-----------------------KLAEIEE 283
WI + KI F + + D L E+EE
Sbjct: 737 RKHPAQSWIVCEKKINSFYPRDRSHPQEKDIQRGLEILILECLKIGYEPDTSFVLHEVEE 796
Query: 284 NMKELGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERE 343
+ K++ F+ + S K+ A L++ P G P R++K++ +CG H+ ++ S + +R+
Sbjct: 797 HHKKI-FLFHHS---AKLAATYGILMTKP-GKPIRIVKNILLCGDCHAFLKYASIVTKRD 851
Query: 344 LVVKDPGSFHHFKDGKCSCKDAY 366
+ ++D FH F +G+CSCKD +
Sbjct: 852 IFLRDSSGFHCFSNGQCSCKDCW 874
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 98/202 (48%), Gaps = 10/202 (4%)
Query: 1 LKLCSLISDVEIP-WNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLN 58
LKL + I +I WN ++ A ++ Y+ L +Q F +D +++ +L + +
Sbjct: 220 LKLFNQIPRRDIASWNTIISAALQDSLYDTAFRLFRNMQATDAFRVDDFTLSILLTASAS 279
Query: 59 PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFI 118
L G Q A+ K GL + VGN LI S+ G +DD + F+ ++ ++WT +
Sbjct: 280 ---LMEGQQVHAHAVKLGLETDLNVGNGLIGFYSKFGNVDDVEWLFEGMRVRDVITWTEM 336
Query: 119 ISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYH 178
++A + G + AL +F + + N ++ + L + EA RLF+ M E
Sbjct: 337 VTAYMEFGLVNLALKVFDEMPEK----NSVSYNTVLAGFCRNEQGFEAMRLFVRMVE-EG 391
Query: 179 IEPSEEHYSIMVEALGRAGMFE 200
+E ++ + +V+A G G ++
Sbjct: 392 LELTDFSLTSVVDACGLLGDYK 413
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 4/127 (3%)
Query: 12 IPWNLLLKA-CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ +N +L C + +E + + ++ D +S+ ++++C V Q
Sbjct: 362 VSYNTVLAGFCRNEQGFEAMRLFVRMVEEGLELTD-FSLTSVVDACGLLGDYKVSKQVHG 420
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAF--KSTPEKNSLSWTFIISARVNHGHP 128
+ K G S+ V L+++ +RCG++ DA F E +S+ WT +I +G P
Sbjct: 421 FAVKFGFGSNGYVEAALLDMYTRCGRMVDAGKMFLRWELEEFSSVVWTAMICGYARNGQP 480
Query: 129 SEALDLF 135
EA+ LF
Sbjct: 481 EEAIYLF 487
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 1/136 (0%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL-LN 63
SL S + + L+ K + + +H L + Y+ +L +C + + +
Sbjct: 123 SLPSPNVVSYTTLISFLSKHRQHHALHLFLRMTTRSHLPPNEYTYVAVLTACSSLLHHFH 182
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G Q A K P V N L+++ ++ A F P ++ SW IISA +
Sbjct: 183 FGLQLHAAALKTAHFDSPFVANALVSLYAKHASFHAALKLFNQIPRRDIASWNTIISAAL 242
Query: 124 NHGHPSEALDLFKDKQ 139
A LF++ Q
Sbjct: 243 QDSLYDTAFRLFRNMQ 258
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 106/413 (25%), Positives = 184/413 (44%), Gaps = 70/413 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN L+ Y+ L + + + ++ IL +C + +++G Y
Sbjct: 302 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVY 361
Query: 72 MTKR--GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ KR G+ + ++ LI++ ++CG I+ A F S ++ SW +I HG +
Sbjct: 362 IDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRAN 421
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
A D+F + + TF L A + G++ +F SM E Y I P EHY M
Sbjct: 422 PAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCM 481
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
++ LG +G+F+E E I + ++ P +IW +LL + ++HG+++L + L++++P
Sbjct: 482 IDLLGHSGLFKEAEEMINSM---EMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEP 538
Query: 248 ---GMYV---------GCW-----------------------IEIQNKIYEFVSNEEL-- 270
G YV G W IEI + ++EF+ ++L
Sbjct: 539 KNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHP 598
Query: 271 ---------------------TSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLI 309
+ S+ L E+EE KE + ++ A+A GLI
Sbjct: 599 RNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGAL-----RHHSEKLAIAFGLI 653
Query: 310 SFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
S G ++K++ +C H A + +S I +RE++ +D FHHF DG CSC
Sbjct: 654 STKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 6/226 (2%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
+ DV + WN L+ + +Y+ EL + + D ++ +L++C + +G
Sbjct: 197 VKDV-VSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGR 255
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q +++ G S+ + N LI++ +CG+++ A F+ K+ +SW +I +
Sbjct: 256 QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMN 315
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL--VGEAYRLFLSMEEVYHIEPSEE 184
EAL LF++ S N T S L A A +G +G +++ PS
Sbjct: 316 LYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSL 375
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
S +++ + G E + ++ L W ++ +HG
Sbjct: 376 RTS-LIDMYAKCGDIEAAQQVFDSMLNRSLSS--WNAMIFGFAMHG 418
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 5/156 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+SY+ +L +C G Q ++ K G V LI + + G+ +DA F
Sbjct: 102 NSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVF 161
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ ++ +S+T +I ++G+ A +F + + + ++ + + YA G
Sbjct: 162 DQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVK----DVVSWNALISGYAETGNYK 217
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
EA LF M + +++P E ++ A ++ E
Sbjct: 218 EALELFKEMMKT-NVKPDESTMVTVLSACAQSASIE 252
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 6/144 (4%)
Query: 16 LLLKACIKAKDYEMVHELLERI-QLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTK 74
LLKAC K+K + ++ + +L C +D Y ++ + + +
Sbjct: 108 FLLKACAKSKAFREGQQIHGHVLKLGCD-LDLYVHTSLIAMYVKNGRXEDARKVFDQSSH 166
Query: 75 RGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDL 134
R ++S+ A LI + G I A F P K+ +SW +IS G+ EAL+L
Sbjct: 167 RDVVSYTA----LIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALEL 222
Query: 135 FKDKQWRYTSMNPTTFRSALKAYA 158
FK+ + +T + L A A
Sbjct: 223 FKEMMKTNVKPDESTMVTVLSACA 246
>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
Length = 1151
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 156/343 (45%), Gaps = 54/343 (15%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
++ L++ N + G Q A + K G VGN LI++ +CG +DA + F
Sbjct: 548 FTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE 607
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
E+N +SW II++ HG EALDLF + N TF L A + +GLV E
Sbjct: 608 MSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEG 667
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226
F SM + Y I P +HY+ +++ GRAG + +FI+ + P ++WRTLL +
Sbjct: 668 LSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEM-PIAADAMVWRTLLSAC 726
Query: 227 RVHGDMKLAKYALDKLLELDP---GMYV-------------------------------- 251
+VH ++++ ++A LLEL+P YV
Sbjct: 727 KVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPG 786
Query: 252 GCWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNR-------------- 294
WIE++N ++ F + L ++ + LA I + + ++G+ +
Sbjct: 787 RSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDP 846
Query: 295 -SLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFM 336
L ++ AV GL+S P MP RVIK++ + Y+ F+
Sbjct: 847 TDLVHSEKLAVTFGLMSLPPCMPLRVIKNLRVEKYTSLYANFL 889
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y + +L+SC L G A K G S VGN +I + RCG A+ F
Sbjct: 144 YVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCD 203
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
P ++++++ +IS GH AL++F++ Q+ S + T S L A A +G
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLG 258
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 96/220 (43%), Gaps = 5/220 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ ++ + + + +Q C + D+ + ++ C + G Q A
Sbjct: 412 VSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHAR 471
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G ++ N L+N+ +RCG+I +A +F+ K+ ++ ++S G EA
Sbjct: 472 IYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEA 531
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L +F N TF SAL A A + + + ++ + + H +E + ++
Sbjct: 532 LKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVG-NALIS 590
Query: 192 ALGRAGMFEEV-LEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
G+ G FE+ +EF + + + W T++ S HG
Sbjct: 591 LYGKCGSFEDAKMEFSE---MSERNEVSWNTIITSCSQHG 627
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WNL+L A + D EL ++Q + ++ IL +C +++G Q +
Sbjct: 311 VLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSL 370
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G S V LI++ S+ G ++ A + EK+ +SWT +I+ V H +A
Sbjct: 371 SVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDA 430
Query: 132 LDLFKDKQ 139
L FK+ Q
Sbjct: 431 LAAFKEMQ 438
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILL 62
C + + +N L+ + E E+ E +Q D +I +L +C + L
Sbjct: 201 FCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDL 260
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
GTQ +Y+ K G+ S + L+++ +CG ++ A + F S+ N + W ++ A
Sbjct: 261 QKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAF 320
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTF 150
+++ +LF Q + + P F
Sbjct: 321 GQINDLAKSFELF--CQMQAAGIRPNQF 346
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A RGL + VGN LI++ S+ G + A F+ ++++SW ++S +G
Sbjct: 65 HAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLG 124
Query: 129 SEALDLFKDKQWRYTSMNPTTF 150
EAL L+ +Q + PT +
Sbjct: 125 EEALGLY--RQMHRAGVVPTPY 144
>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
Length = 1027
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 106/408 (25%), Positives = 183/408 (44%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN +L A E V +L+ +++ +D +S + L++ +L G Q
Sbjct: 621 ITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGL 680
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G + N ++ S+CG+I + + ++ SW +ISA HG+ E
Sbjct: 681 AVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEV 740
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
F + TF S L A + GLV + + + + +EP+ EH +++
Sbjct: 741 CATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVID 800
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGR+G E FI + P K L+WR+LL S ++HG++ + A + L +L+P
Sbjct: 801 LLGRSGRLAEAETFISKM-PMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDS 859
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEEL---TSE 273
+YV C W+++++K+ F + T E
Sbjct: 860 VYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTME 919
Query: 274 VSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPTR 318
+ KL +I++ +KE G+V + S ++ A+A L+S P G R
Sbjct: 920 IYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVR 979
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +C HS +F+S +I R +V++D FHHF+ G CSCKD +
Sbjct: 980 IFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 1027
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 112/267 (41%), Gaps = 43/267 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP-ILLNVGTQAQA 70
+ WN L+ + +D + + +++ + ++ +L++CL P LL G A
Sbjct: 519 VAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHA 578
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ G S V N LI + ++CG + + F +N ++W +++A +HGH E
Sbjct: 579 YIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEE 638
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL---------------FLSMEE 175
L L + S++ +F L A A + ++ E +L F + +
Sbjct: 639 VLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAAD 698
Query: 176 VY---------------HIEPSEEHYSIMVEALGRAGMFEEVLEFIK-----GIVPGKLC 215
+Y + S ++I++ ALGR G FEEV GI PG +
Sbjct: 699 MYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVT 758
Query: 216 PLIWRTLLLSSRVHG---DMKLAKYAL 239
+ LL++ HG D LA Y +
Sbjct: 759 FVS----LLTACSHGGLVDKGLAYYDM 781
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSC-LNPILLNVGTQAQ 69
E+ WN ++ ++ Y E ++ S+ I ++ +C + + G Q
Sbjct: 138 EVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVH 197
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
++ K GL+S V ++++ G + + F+ P++N +SWT ++ + G P
Sbjct: 198 GFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPE 257
Query: 130 EALDLFKDK 138
E +D++KD+
Sbjct: 258 EVIDIYKDE 266
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
++G Q + K GL S AV N LI++ G +D A+ F E++++SW I +A
Sbjct: 267 SLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAY 326
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
+GH E+ +F + + +N TT + L
Sbjct: 327 AQNGHIEESFRIFSLMRRFHDEVNSTTVSTLL 358
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 124/331 (37%), Gaps = 51/331 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDS------YSICDILNSCLNPILLNVG 65
I WN L+ + + L+ + L C I S + L +C P G
Sbjct: 418 ISWNSLMASFVNDG------RSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG 471
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ GL + +GN L+++ + G++ ++ P ++ ++W +I
Sbjct: 472 RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAED 531
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE------AYRLFLSMEEVYHI 179
P +AL F+ + S N T S L A L G + E AY + E H+
Sbjct: 532 EDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHV 591
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG--------- 230
+ S ++ + G + G+ + + W +L ++ HG
Sbjct: 592 KNS------LITMYAKCGDLSSSQDLFNGLDNRNI--ITWNAMLAANAHHGHGEEVLKLV 643
Query: 231 -DMKLAKYALD------------KLLELDPGMYV-GCWIEIQNKIYEFVSNEELTSEVSD 276
M+ +LD KL L+ G + G +++ + F+ N +++
Sbjct: 644 SKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNA--AADMYS 701
Query: 277 KLAEIEENMKELGFVLNRSLYQTKMKAVALG 307
K EI E +K L +NRSL + ALG
Sbjct: 702 KCGEIGEVVKMLPPSVNRSLPSWNILISALG 732
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN + A + E + ++ ++S ++ +L+ + G
Sbjct: 317 ISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGL 376
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G S V N L+ + + G+ +A+L FK P K+ +SW ++++ VN G +A
Sbjct: 377 VVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDA 436
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
L L S+N TF SAL A
Sbjct: 437 LGLLCSMISSGKSVNYVTFTSALAA 461
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 108/372 (29%), Positives = 168/372 (45%), Gaps = 54/372 (14%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
SI +L +C N L G +Y+ + G V ++++ S+CG +D A F T
Sbjct: 921 SILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDET 980
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
K+ + W+ +I++ HGH +A+DLF + TF L A + GL+ E
Sbjct: 981 AGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGK 1040
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
F M E + I +Y+ MV+ LGRAG E ++ I+ + P + IW +LL + R
Sbjct: 1041 MYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENM-PVEPDASIWGSLLGACR 1099
Query: 228 VHGDMKLAKYALDKLLELDP---GMYV---------GCWIEIQ-----------NKIYEF 264
+H ++ LA+ D L LDP G +V W E++ NKI F
Sbjct: 1100 IHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGF 1159
Query: 265 ----VSNEELTSEVSD-----------KLAEIEENMKELGFVLNRSL------------- 296
N+ V D KL E+ MK LG+V
Sbjct: 1160 SLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAA 1219
Query: 297 --YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHH 354
Y ++ A+A GLI+ G R+ K++ +CG H+A + +S I+ R ++V+D FH
Sbjct: 1220 LSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHR 1279
Query: 355 FKDGKCSCKDAY 366
F+DG CSC D +
Sbjct: 1280 FEDGVCSCGDYW 1291
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 16/269 (5%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+ ++ IL + + Y+ + G S+ VG LI + S+CG + DA F
Sbjct: 407 DAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLF 466
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGL 162
K ++ + W+ +I+A HG EAL++F D+ + +++ P TF S L A + GL
Sbjct: 467 KGMIVRDVVIWSSMIAAYGIHGRGGEALEIF-DQMVKNSTVRPNNVTFLSILSACSHAGL 525
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V E ++F M Y + P EH+ IMV+ LGR G + ++ I + P P +W L
Sbjct: 526 VEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRM-PIPAGPHVWGAL 584
Query: 223 LLSSRVHGDMKLAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIE 282
L + R+H ++++ + A L LDP + G +I + N IY D +AE+
Sbjct: 585 LGACRIHHNIEMGEAAAKNLFWLDPS-HAGYYILLSN-IYAVDGKW-------DNVAELR 635
Query: 283 ENMKELGFVLNRSLYQTKMKAVALGLISF 311
+KE G + ++ M V G+ SF
Sbjct: 636 TRIKERGL---KKMFGQSMVEVRGGVHSF 661
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLER-IQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ W ++ + D E L + + + C +D ++ ++++C + + G+
Sbjct: 171 VLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHG 230
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ +R + N L+N+ ++ G A F PEK+ +SW+ +I+ N+ +E
Sbjct: 231 LVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANE 290
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYAL 159
AL+LF + + N T SAL+A A+
Sbjct: 291 ALNLFHEMIEKRFEPNSVTVVSALQACAV 319
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 3/148 (2%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYM 72
WN L++ + K +E L + G D+++I L +C +L +G +
Sbjct: 70 WNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFA 129
Query: 73 TKRGLI-SHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K I S VG+ L+ + S+CG++ +A F+ +++ WT +++ + P EA
Sbjct: 130 KKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEA 189
Query: 132 LDLFKDK-QWRYTSMNPTTFRSALKAYA 158
L LF ++P T S + A A
Sbjct: 190 LALFSQMVMMDCVVLDPVTLVSVVSACA 217
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN++++ + EL ++ D ++ L SC L G ++
Sbjct: 786 WNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLV 845
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
G + V L+++ ++CG I+ A L F ++ +SWT +IS ++G+ SE L
Sbjct: 846 CCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLG 905
Query: 134 LF 135
F
Sbjct: 906 FF 907
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/205 (17%), Positives = 86/205 (41%), Gaps = 13/205 (6%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S ++ L +C L G + +G +V LI++ +C D+A F
Sbjct: 306 NSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLF 365
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ P+K+ +SW ++S +G +++ +F++ + L A + +G+
Sbjct: 366 QRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQ 425
Query: 165 EA-----YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIW 219
+A Y + + S ++E + G + ++ KG++ + +IW
Sbjct: 426 QALCLHGYVVRSGFNSNVFVGAS------LIELYSKCGSLGDAVKLFKGMIVRDV--VIW 477
Query: 220 RTLLLSSRVHGDMKLAKYALDKLLE 244
+++ + +HG A D++++
Sbjct: 478 SSMIAAYGIHGRGGEALEIFDQMVK 502
>gi|242047556|ref|XP_002461524.1| hypothetical protein SORBIDRAFT_02g004050 [Sorghum bicolor]
gi|241924901|gb|EER98045.1| hypothetical protein SORBIDRAFT_02g004050 [Sorghum bicolor]
Length = 867
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 108/409 (26%), Positives = 177/409 (43%), Gaps = 58/409 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCG--FIDSYSICDILNSCLNPILLNVGTQAQ 69
I WN LL A ++ +YE ++ G FID + + +L C + +G Q
Sbjct: 459 IAWNSLLLASVRDGEYEKALSTFLQMFRSSGVEFIDEFMLTAVLGVCGSLGFAELGKQMH 518
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
++ K GL+ VGN +I++ +CG++ DA F+ ++ +SW +I+A + H
Sbjct: 519 SFTAKSGLLCARGVGNAIISMYGKCGELKDAGSFFEGMTCRDLVSWNAMITAHLLHHQGD 578
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKA--YALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
E L ++ + + + TF + A + + LFL+M Y IEP+ EHY+
Sbjct: 579 EILKIWSEMERLMVRPDSITFLLVISACSHTSSDSTQKCRDLFLTMPSTYGIEPAMEHYA 638
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL-- 245
V LG G F++ + I G+ P K L+WR+LL S H +M + + A+ LL L
Sbjct: 639 AFVYVLGCWGHFDDAEQLIGGM-PLKPGALVWRSLLDSCSKHSNMAVRRRAMKHLLALEP 697
Query: 246 -DPGMYV--------------------------------GCWIEIQNKIYEFVSNEELTS 272
DP YV W N ++ F + +
Sbjct: 698 QDPSTYVLTSNLLSESARWHSSENRRLEMREKGMRKIPARSWTFHGNMVHSFFARDRTHP 757
Query: 273 EVSDKLAEIE----ENMK-----ELGFVLNRS---------LYQTKMKAVALGLISFPHG 314
+ D A ++ E +K + FVL+ +Y + A GL+ G
Sbjct: 758 QSRDIYAGLDVLILECIKAGYEPDTTFVLHDVEEYQKRHFLMYHSVKLASMYGLLMAGPG 817
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCK 363
RV+K++ MCG HS S + + V+D FH F++GKCSC+
Sbjct: 818 QTVRVVKNIRMCGDCHSFLEHASAATGKVISVRDSSGFHIFREGKCSCR 866
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Query: 36 RIQLCCGFIDS-YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC 94
R++L G + + Y+ +L +C +GTQ A + K G S V N L+ + +C
Sbjct: 134 RMRLADGLLPTEYTFVGLLTACARRGNPRLGTQVHALVAKSGHASSLLVANALLGMYVKC 193
Query: 95 GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
G+ DA AF ++ SW +++ V G EA +LF + + S N R L
Sbjct: 194 GRFGDALRAFDGMDRRDVSSWNAVLAGLVELGRHEEAFELFGEMR---ASGNVRADRFTL 250
Query: 155 KAYALMGLVGEAY 167
AL+ GE +
Sbjct: 251 S--ALLAAAGEGF 261
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 6/146 (4%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN +L ++ +E EL ++ D +++ +L + G A
Sbjct: 214 WNAVLAGLVELGRHEEAFELFGEMRASGNVRADRFTLSALLAAAGEGFGQPQGEAVHALS 273
Query: 73 TKRGLISHPAVGNCLININSRCG-KIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K GL + +VGN LI + G +DD F+ P K+ +SWT +++ + G A
Sbjct: 274 LKSGLETDLSVGNALIGFYAEHGASVDDVVSVFQRMPVKDVISWTGLLNGYMEFGLVDMA 333
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAY 157
LD+F+ R N T+ + L +
Sbjct: 334 LDVFE----RMPQRNFVTYNAVLTGF 355
>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 881
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 143/275 (52%), Gaps = 16/275 (5%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ K E R+ L G I D+++ +L+ C N + +G Q
Sbjct: 540 VSWNSIISGFSSEKQGENALSYFSRM-LQVGVIPDNFTYATVLDICANLATVELGKQIHG 598
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K L S + + ++++ S+CG + D+ + F+ P+++ ++W+ +I A HG +
Sbjct: 599 QILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGED 658
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+ LF++ Q + N T F S L+A A MG V + F M Y ++P EHYS MV
Sbjct: 659 AIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMV 718
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGR+G E LE I+ + P + +IWRTLL R+ G++++A+ A + LL+LDP
Sbjct: 719 DLLGRSGQVNEALELIESM-PFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQDS 777
Query: 248 GMYV---------GCWIEIQNKIYEFVSNEELTSE 273
YV G W E+ KI F+ N +L E
Sbjct: 778 SAYVLLSNVYAIAGMWGEVA-KIRSFMKNYKLKKE 811
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L ++ + E+ +++L D + +L +C +G Q
Sbjct: 136 VSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCL 195
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G S G L+++ S C K+D A F PE+NS+ W+ +I+ V + +E
Sbjct: 196 AIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEG 255
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L L+K ++ TF SA ++ A
Sbjct: 256 LKLYKVMLDEGMGVSQATFASAFRSCA 282
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 4/139 (2%)
Query: 1 LKLCSLISDVEI----PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSC 56
++ C + D+EI WN ++ A + + E L + D Y+ ++ +C
Sbjct: 424 MEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKAC 483
Query: 57 LNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWT 116
LN G + + K G+ VG+ +I++ +CG + +A+ + E+ ++SW
Sbjct: 484 AGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWN 543
Query: 117 FIISARVNHGHPSEALDLF 135
IIS + AL F
Sbjct: 544 SIISGFSSEKQGENALSYF 562
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 6/129 (4%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
I C N +N G QA A +T G + V NCL+ +C ++ A F P+++
Sbjct: 44 IFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKMPQRD 103
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
+SW +I G+ A LF R + ++ S L Y G ++ +F
Sbjct: 104 VISWNTMIFGYAGVGNMEFAQFLFDSMPER----DVVSWNSMLSCYLQNGFHRKSIEIFT 159
Query: 172 SME--EVYH 178
M E+ H
Sbjct: 160 KMRLLEIQH 168
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Q K GL + V N ++++ ++CG + +A L F K+++SW II+A
Sbjct: 391 GIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQ 450
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+ H E L LF + TF S +KA A
Sbjct: 451 NEHVEETLALFVSMLRSTMEPDDYTFGSVVKACA 484
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 43/113 (38%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+ + SC +GTQ AY K VG +++ ++C ++ DA
Sbjct: 269 VSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKV 328
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
F + P S +I EAL++F+ Q Y + + AL A
Sbjct: 329 FNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTA 381
>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 161/319 (50%), Gaps = 41/319 (12%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ K E ++ L G I D+Y+ +L+ C N + +G Q A
Sbjct: 508 VSWNSIISGFSSQKQSENAQRYFSQM-LEMGIIPDNYTYATVLDVCANMATIELGKQIHA 566
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K L S + + L+++ S+CG + D+ L F+ P+++ ++W+ +I A HG +
Sbjct: 567 QILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEK 626
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A++LF++ Q N T F S L+A A MG V + F M Y ++P EHYS MV
Sbjct: 627 AINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCMV 686
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGR+G E L+ I+ + P + +IWRTLL + ++ G++++A+ A + LL+LDP
Sbjct: 687 DLLGRSGQVNEALKLIESM-PFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDS 745
Query: 248 -------------GMY------------------VGC-WIEIQNKIYEFVSNEEL---TS 272
GM+ GC WIE++++++ F+ ++ +
Sbjct: 746 SAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIEVRDEVHTFLVGDKAHPRSE 805
Query: 273 EVSDKLAEIEENMKELGFV 291
E+ ++ + + MK G+V
Sbjct: 806 EIYEQTHLLVDEMKWAGYV 824
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN LL + E+ R++ D + IL +C +G Q
Sbjct: 104 VSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCL 163
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G + G+ L+++ S+C K+DDA F+ PE+N + W+ +I+ V + E
Sbjct: 164 AIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEG 223
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L LFKD ++ +T+ S ++ A
Sbjct: 224 LKLFKDMLKVGMGVSQSTYASVFRSCA 250
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
IL C N LN G Q M G + V NCL+ + K++ A F P+++
Sbjct: 12 ILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRMPQRD 71
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
+SW +I G+ A LF R + ++ S L Y G+ ++ +F+
Sbjct: 72 VISWNTLIFGYAGIGNMGFAQSLFDSMPER----DVVSWNSLLSCYLHNGVNRKSIEIFV 127
Query: 172 SMEEV 176
M +
Sbjct: 128 RMRSL 132
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 1 LKLCSLISDVE----IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI------DSYSIC 50
++ C + ++E + WN ++ A +E E+++ + L + D ++
Sbjct: 392 MEACLIFEEMERRDAVSWNAIIAA------HEQNEEIVKTLSLFVSMLRSTMEPDDFTYG 445
Query: 51 DILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK 110
++ +C LN GT+ + K G+ VG+ L+++ +CG + +A+ EK
Sbjct: 446 SVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEK 505
Query: 111 NSLSWTFIISARVNHGHPSEALDLF 135
++SW IIS + A F
Sbjct: 506 TTVSWNSIISGFSSQKQSENAQRYF 530
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 41/105 (39%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+ SC +GTQ + K +G +++ ++C ++ DA F + P
Sbjct: 245 VFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPP 304
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
S+ II +ALD+F+ Q + + AL A
Sbjct: 305 RQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTA 349
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 6/137 (4%)
Query: 22 IKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHP 81
+KA D + + L+R L GF D S+ L +C G Q K GL +
Sbjct: 322 LKALD---IFQSLQRNNL--GF-DEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNI 375
Query: 82 AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWR 141
V N ++++ +CG + +A L F+ ++++SW II+A + + L LF
Sbjct: 376 CVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRS 435
Query: 142 YTSMNPTTFRSALKAYA 158
+ T+ S +KA A
Sbjct: 436 TMEPDDFTYGSVVKACA 452
>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1212
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 98/359 (27%), Positives = 168/359 (46%), Gaps = 55/359 (15%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G + ++ ++G + N L+++ +RCG +++A F +++ + WT +I+A
Sbjct: 569 LKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINA 628
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
HG +A+DLF + TF + L A + GLV E + F M+ Y +EP
Sbjct: 629 NGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEP 688
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
EHY+ +V+ L R+ EE F++ + P + +W LL + R+H + L + A K
Sbjct: 689 WPEHYACLVDLLARSNSLEEAYHFVRNM-PIEPSAEVWCALLGACRIHSNNDLGEVAAKK 747
Query: 242 LLEL---DPGMYV-------------------------------GC-WIEIQNKIYEFVS 266
LL+L + G YV GC WIE++NKI+ F++
Sbjct: 748 LLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMA 807
Query: 267 NEELTSEVSD---KLAEIEENMKELG-------FVLNRSLYQTKMK---------AVALG 307
++ + ++ KLA+ + +KE G V + + K + A+ G
Sbjct: 808 RDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEEKTQMLYGHSERLALGYG 867
Query: 308 LISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
L+ G R+ K++ +C H+ + S I +R LVV+D FHHF+ G CSC D +
Sbjct: 868 LLVTSKGTCLRITKNLRICDDCHAFFKIASEISQRTLVVRDASRFHHFERGLCSCGDFW 926
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%)
Query: 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQA 68
D + WN ++ A + + L R+Q ++Y+ L +C P + +G
Sbjct: 214 DDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGI 273
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A + K + V N LI + + CG+++DA+ FKS K+ +SW ++S V +
Sbjct: 274 HAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMY 333
Query: 129 SEALDLFKDKQ 139
S+A++ F+D Q
Sbjct: 334 SDAINHFQDMQ 344
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 2/145 (1%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ AC+ A Y EL + +++ +D+++ +L +C +G +
Sbjct: 116 WNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAV 175
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKS--TPEKNSLSWTFIISARVNHGHPSEA 131
K G V N LI + ++CG + A + F S + + +SW IISA V G EA
Sbjct: 176 KCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEA 235
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
L LF+ Q N TF SAL+A
Sbjct: 236 LSLFRRMQEVGVESNTYTFVSALQA 260
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 66/145 (45%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN LL ++ Y + +Q D S+ +++ + L G + AY
Sbjct: 318 VSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAY 377
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G+ S+ +GN LI++ +C + AF+ PEK+ +SWT II+ + +A
Sbjct: 378 AIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDA 437
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
L+L + Q ++P S L A
Sbjct: 438 LNLLRKVQLEKMDVDPMMIGSILLA 462
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W ++ + + + LL ++QL +D I IL +C + + Y
Sbjct: 419 ISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGY 478
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL + + N ++N+ +D A F+S K+ +SWT +I+ V++G EA
Sbjct: 479 VLKGGL-ADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEA 537
Query: 132 LDLFK 136
L+LF
Sbjct: 538 LELFN 542
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 53 LNSCLNPILLNVGTQAQAYMTK-RGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
L C + L G Q A+ K + + + +++ +CG DA F E+
Sbjct: 53 LELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERT 112
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+W +I A V+ G EA++L+K+ + S++ TF LKA
Sbjct: 113 IFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKA 157
>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
Length = 814
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 158/318 (49%), Gaps = 39/318 (12%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ K E + ++ D+++ IL++C N + + +G Q A
Sbjct: 481 VSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQ 540
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K+ L S + + L+++ S+CG + D L F+ P ++ ++W ++ HG EA
Sbjct: 541 IIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEA 600
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L +F+ Q N TF + L+A MGLV + F SM Y ++P EHYS +V+
Sbjct: 601 LKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVD 660
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
+GR+G + LE I+G+ P + +IWRTLL ++HG++++A+ A +L+L+P
Sbjct: 661 IMGRSGQVSKALELIEGM-PFEADAVIWRTLLSXCKIHGNVEVAEKAAYSILQLEPEDSA 719
Query: 248 ------------GMY------------------VGC-WIEIQNKIYEFVSNEEL---TSE 273
GM+ GC WIEI+++++ F+ ++ + E
Sbjct: 720 AYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKE 779
Query: 274 VSDKLAEIEENMKELGFV 291
+ + L + + MK +G++
Sbjct: 780 IYENLDVLTDEMKWVGYM 797
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Q K S+ V N ++++ +CG + +A L F+ ++++SW II+A
Sbjct: 332 GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQ 391
Query: 125 HGHPSEALDLFKDKQWRYTS-MNPT--TFRSALKAYA 158
+G+ + L LF W S M P T+ S LKA A
Sbjct: 392 NGNEEKTLSLFV---WMLQSGMEPDEFTYGSVLKACA 425
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 53/130 (40%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
++S + WN ++ A + + E L + D ++ +L +C LN G
Sbjct: 374 MVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCG 433
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ + K + VG LI++ S+CG ++ A+ E+ +SW IIS
Sbjct: 434 MEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQ 493
Query: 126 GHPSEALDLF 135
EA F
Sbjct: 494 KQSEEAQKTF 503
>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 937
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 106/408 (25%), Positives = 183/408 (44%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN +L A E V +L+ +++ +D +S + L++ +L G Q
Sbjct: 531 ITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGL 590
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G + N ++ S+CG+I + + ++ SW +ISA HG+ E
Sbjct: 591 AVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEV 650
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
F + TF S L A + GLV + + + + +EP+ EH +++
Sbjct: 651 CATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVID 710
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGR+G E FI + P K L+WR+LL S ++HG++ + A + L +L+P
Sbjct: 711 LLGRSGRLAEAETFISKM-PMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDS 769
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEEL---TSE 273
+YV C W+++++K+ F + T E
Sbjct: 770 VYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTME 829
Query: 274 VSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPTR 318
+ KL +I++ +KE G+V + S ++ A+A L+S P G R
Sbjct: 830 IYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVR 889
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ K++ +C HS +F+S +I R +V++D FHHF+ G CSCKD +
Sbjct: 890 IFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 112/267 (41%), Gaps = 43/267 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP-ILLNVGTQAQA 70
+ WN L+ + +D + + +++ + ++ +L++CL P LL G A
Sbjct: 429 VAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHA 488
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ G S V N LI + ++CG + + F +N ++W +++A +HGH E
Sbjct: 489 YIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEE 548
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL---------------FLSMEE 175
L L + S++ +F L A A + ++ E +L F + +
Sbjct: 549 VLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAAD 608
Query: 176 VY---------------HIEPSEEHYSIMVEALGRAGMFEEVLEFIK-----GIVPGKLC 215
+Y + S ++I++ ALGR G FEEV GI PG +
Sbjct: 609 MYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVT 668
Query: 216 PLIWRTLLLSSRVHG---DMKLAKYAL 239
+ LL++ HG D LA Y +
Sbjct: 669 FVS----LLTACSHGGLVDKGLAYYDM 691
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSC-LNPILLNVGTQAQ 69
E+ WN ++ ++ Y E ++ S+ I ++ +C + + G Q
Sbjct: 23 EVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVH 82
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
++ K GL+S V ++++ G + + F+ P++N +SWT ++ + G P
Sbjct: 83 GFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPE 142
Query: 130 EALDLFK 136
E +D++K
Sbjct: 143 EVIDIYK 149
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
++G Q + K GL S AV N LI++ G +D A+ F E++++SW I +A
Sbjct: 177 SLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAY 236
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
+GH E+ +F + + +N TT + L
Sbjct: 237 AQNGHIEESFRIFSLMRRFHDEVNSTTVSTLL 268
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 124/331 (37%), Gaps = 51/331 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDS------YSICDILNSCLNPILLNVG 65
I WN L+ + + L+ + L C I S + L +C P G
Sbjct: 328 ISWNSLMASFVNDG------RSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG 381
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ GL + +GN L+++ + G++ ++ P ++ ++W +I
Sbjct: 382 RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAED 441
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE------AYRLFLSMEEVYHI 179
P +AL F+ + S N T S L A L G + E AY + E H+
Sbjct: 442 EDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHV 501
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG--------- 230
+ S ++ + G + G+ + + W +L ++ HG
Sbjct: 502 KNS------LITMYAKCGDLSSSQDLFNGLDNRNI--ITWNAMLAANAHHGHGEEVLKLV 553
Query: 231 -DMKLAKYALD------------KLLELDPGMYV-GCWIEIQNKIYEFVSNEELTSEVSD 276
M+ +LD KL L+ G + G +++ + F+ N +++
Sbjct: 554 SKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNA--AADMYS 611
Query: 277 KLAEIEENMKELGFVLNRSLYQTKMKAVALG 307
K EI E +K L +NRSL + ALG
Sbjct: 612 KCGEIGEVVKMLPPSVNRSLPSWNILISALG 642
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN + A + E + ++ ++S ++ +L+ + G
Sbjct: 227 ISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGL 286
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G S V N L+ + + G+ +A+L FK P K+ +SW ++++ VN G +A
Sbjct: 287 VVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDA 346
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKA 156
L L S+N TF SAL A
Sbjct: 347 LGLLCSMISSGKSVNYVTFTSALAA 371
>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 152/328 (46%), Gaps = 39/328 (11%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L ++ E + E ++ ID Y+ +L SC + L +G Q
Sbjct: 271 VSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVL 330
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + V + LI + S+CG I+DA +F +TP+ +S++W +I HG A
Sbjct: 331 VLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIA 390
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LDLF + R ++ TF + L A + +GLV E + SME Y I P EHY+ M++
Sbjct: 391 LDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMID 450
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG--- 248
LGRAG +E I+ + P + ++W+TLL + R GD++LA LLEL+P
Sbjct: 451 LLGRAGRLDEAKALIEAM-PFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHC 509
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEEL---TSE 273
YV WIE++N++ F + + E
Sbjct: 510 TYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRSFNAEDRSHPNCEE 569
Query: 274 VSDKLAEIEENMKELGFVLNRSLYQTKM 301
+ +L E+ E ++ L +V N Q +
Sbjct: 570 IYLRLGELMEEIRRLDYVANSEFLQNNL 597
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 63/139 (45%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + ++E E L+ ++ +D YS IL + VG Q +
Sbjct: 66 VSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSM 125
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M K G + G+ L+++ ++C +++DA FKS +NS++W +IS G A
Sbjct: 126 MVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTA 185
Query: 132 LDLFKDKQWRYTSMNPTTF 150
L + ++ TF
Sbjct: 186 FWLLDCMELEGVEIDDGTF 204
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 12/230 (5%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ + D LL+ ++L ID + +L +P L + TQ A
Sbjct: 167 VTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAK 226
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSL---SWTFIISARVNHGHP 128
+ K GL S V N +I S CG I+DA+ F E L SW I++ G
Sbjct: 227 IVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHVSWNSILTGFSQSGLS 286
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKA---YALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
+AL F++ + +Y ++ F + L++ A + L + + L L EP+
Sbjct: 287 EDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKS----GFEPNGFV 342
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLA 235
S ++ + G+ E+ + P K + W +L+ HG K+A
Sbjct: 343 ASSLIFMYSKCGVIEDARKSFDA-TP-KDSSIAWNSLIFGYAQHGRGKIA 390
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 7/182 (3%)
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G + N +I+ ++CG+I A F T +++++SW +I+ VN G+ AL+
Sbjct: 27 KSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALE 86
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
K + +++ +F S LK A +G V E + SM E + S +++
Sbjct: 87 FLKSMKRYGFAVDGYSFGSILKGVACVGYV-EVGQQVHSMMVKMGYEGNVFAGSALLDMY 145
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL----LELDPGM 249
+ E+ E K I + W L+ GD A + LD + +E+D G
Sbjct: 146 AKCERVEDAFEVFKSINIRN--SVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGT 203
Query: 250 YV 251
+
Sbjct: 204 FA 205
>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic [Vitis vinifera]
gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
Length = 802
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 110/410 (26%), Positives = 183/410 (44%), Gaps = 58/410 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGTQAQ 69
I WN ++ + K + L + LC + D+ +I IL + L Q
Sbjct: 396 ISWNAMIASYTKNGENRKAMTLFQ--DLCNKTLKPDATTIASILPAYAELASLREAEQIH 453
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
Y+TK L S+ V N ++ + +CG + A F K+ +SW +I A HG
Sbjct: 454 GYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGR 513
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
+++LF + + + N +TF S L + ++ GLV E + F SM+ Y+I P EHY +
Sbjct: 514 ISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCI 573
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---D 246
++ +GR G + FI+ + P IW +LL +SR GD++LA+ A + +L L +
Sbjct: 574 LDLIGRTGNLDHAKNFIEEM-PLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDN 632
Query: 247 PGMYV---------GCW-----------------------IEIQNKIYEFVSNEELTSEV 274
G YV G W +++ +K + FV+ + +E+
Sbjct: 633 TGCYVLLSNMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDLSSKTFRFVNQDRSDNEI 692
Query: 275 S---DKLAEIEENMKELGFV---------------LNRSLYQTKMKAVALGLISFPHGMP 316
+ D L I + + E +V N + + A+ GLIS G P
Sbjct: 693 NMVYDVLDIISKKIGEDVYVHSLTKFRPSDLEKKRANSAKSHSLRLAICFGLISTTIGNP 752
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V K++ +C H + +S +RE++V+D FHHF G CSC D +
Sbjct: 753 VLVRKNIRICEACHRFAKRISETTKREIIVRDSKIFHHFNGGHCSCGDYW 802
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 108/234 (46%), Gaps = 11/234 (4%)
Query: 2 KLCSLISDVEI-PWNLLLKA-CIKAKDYE---MVHELLERIQLCCGFIDSYSICDILNSC 56
+L I+D I WN ++ + A+ +E V ++ E +L +I ++ ++L C
Sbjct: 283 RLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWI---TMINLLPPC 339
Query: 57 LNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWT 116
+ +G + + G + H + L+++ CGK+ A+ F E+N +SW
Sbjct: 340 AQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWN 399
Query: 117 FIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEV 176
+I++ +G +A+ LF+D + + TT S L AYA + + EA ++ + ++
Sbjct: 400 AMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKL 459
Query: 177 YHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
++ + + +V G+ G E + + + W T++++ +HG
Sbjct: 460 -KLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDV--ISWNTVIMAYAIHG 510
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 70/150 (46%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN++++ + + + R++ D+++ ++ +C L G + +
Sbjct: 94 WNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVI 153
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K GL +GN LI + ++ G I+ A++ F+ P ++ +SW +IS V+ G +L
Sbjct: 154 KSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLS 213
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F++ Q ++ + L A +L G +
Sbjct: 214 CFREMQASGIKLDRFSVIGILGACSLEGFL 243
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 52/128 (40%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + D +Q +D +S+ IL +C L G +
Sbjct: 193 VSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQ 252
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M + L V L+++ ++CG++D A+ F +K+ ++W +I + E+
Sbjct: 253 MMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFES 312
Query: 132 LDLFKDKQ 139
+ Q
Sbjct: 313 FAYVRKMQ 320
>gi|225441775|ref|XP_002277828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33680-like [Vitis vinifera]
Length = 773
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 159/329 (48%), Gaps = 41/329 (12%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
SL+ + +N +L I A D E L +++L DS + +L+ + L
Sbjct: 441 SLLDKNIVSFNAILSGYIGA-DEEDAMALFSQLRLADIKPDSVTFARLLSLSADQACLVK 499
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G AY+ K G ++P+VGN +I + ++CG I DA F S +S+SW +ISA
Sbjct: 500 GKCLHAYIIKTGFEANPSVGNAVITMYAKCGSIGDACQLFYSMNYLDSISWNAVISAYAL 559
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
HG +AL LF++ + + T S L+A + GL+ E + LF ME Y I+P E
Sbjct: 560 HGQGRKALILFEEMKKEEFVPDEITILSVLQACSYSGLLEEGFCLFNDMESKYGIKPEIE 619
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
H++ MV+ LGRAG E + FI P PL+WRTL+ ++HGD+ + A LL+
Sbjct: 620 HFACMVDLLGRAGYLSEAMSFINR-SPFSGSPLLWRTLVHVCKLHGDLNFGQIASKHLLD 678
Query: 245 LDP----------GMYVG-------------------------CWIEIQNKIYEFVSNEE 269
L P +Y G WIEI NK+++FV++++
Sbjct: 679 LAPEEAGSYILVSNLYAGGGMLNEAARVRTVMNDLKVSKEAGSSWIEIDNKVHQFVASDK 738
Query: 270 ---LTSEVSDKLAEIEENMKELGFVLNRS 295
+ E+ KL ++ MK+ + NR+
Sbjct: 739 DHPESKEIYAKLDLLKSEMKQ-NMIYNRT 766
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 44/231 (19%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERI-QLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ W LL +K + + E +I +L GF DS +L+ C L +G Q
Sbjct: 347 VSWTALLSGYVKNGNGKKALEGFSQILELGVGF-DSCCFATLLDGCSECKNLGLGLQIHG 405
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
++ K G + +VG LI++ ++C K+ A L F S +KN +S+ I+S + +
Sbjct: 406 FVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVSFNAILSGYIG-ADEED 464
Query: 131 ALDLFKDKQWRYTSM-------------------------------------NPTTFRSA 153
A+ LF Q R + NP+ +
Sbjct: 465 AMALF--SQLRLADIKPDSVTFARLLSLSADQACLVKGKCLHAYIIKTGFEANPSVGNAV 522
Query: 154 LKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAG--MFEEV 202
+ YA G +G+A +LF SM + I + + + GR +FEE+
Sbjct: 523 ITMYAKCGSIGDACQLFYSMNYLDSISWNAVISAYALHGQGRKALILFEEM 573
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 5/244 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W L+K ++ D E V + + + ++ IL +C + L G Q +
Sbjct: 145 ITWTTLIKGHLQVNDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQIHGF 204
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ KRG VG LI++ SRCG + A+ + + K+ F+IS G +A
Sbjct: 205 VIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEKA 264
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG-EAYRLFLSMEEVYHIEPSEEHYSIMV 190
+ +F N TF + + A G + E R+ M + +V
Sbjct: 265 IGVFLHLLGSGLEPNDYTFTNVIS--ACNGDIDVEVLRVLHGMCIKCGCGDEISVGNAIV 322
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMY 250
+ GM EE + G+ G+ + W LL +G+ K A ++LEL G
Sbjct: 323 SVYVKHGMLEEAEKSFCGM--GERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFD 380
Query: 251 VGCW 254
C+
Sbjct: 381 SCCF 384
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 40/95 (42%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L +G A++ K G + GN L+N+ + K+ DA F +N+++WT +I
Sbjct: 94 LMLGQAIHAFLAKLGYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEMLVRNTITWTTLIKG 153
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ + ++ W N T L+A
Sbjct: 154 HLQVNDVESVFRIAREMYWVGEEFNEHTCSVILQA 188
>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15130
gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 689
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 112/412 (27%), Positives = 186/412 (45%), Gaps = 58/412 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W+ L+ + ++ L +R+Q IDS+++ I+ + LL G Q QA
Sbjct: 279 ISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQAL 338
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K +V N ++++ +CG +D+A+ F K+ +SWT +I+ HG ++
Sbjct: 339 AVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKS 398
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ +F + + + + L A + G++ E LF + E + I+P EHY+ +V+
Sbjct: 399 VRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVD 458
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD---PG 248
LGRAG +E I +P K IW+TLL RVHGD++L K LL +D P
Sbjct: 459 LLGRAGRLKEAKHLID-TMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPA 517
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEE---LTSE 273
YV W+EI+ +++ F S E+ LT
Sbjct: 518 NYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPV 577
Query: 274 VSDKLAEIEENMK-ELGFV--LNRSLY-----------QTKMKAVALGLISFPHGM---- 315
+ + L E E ++ ELG+V L L+ + + +A+GL G+
Sbjct: 578 IQETLKEAERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQKG 637
Query: 316 -PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV K++ +C H + +S I + VV+D FH F+DG CSC D +
Sbjct: 638 KTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGDYW 689
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 13/208 (6%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F + C +LN+ L G Q + K G VGN L+++ S+CG+I++A+
Sbjct: 110 FSTNLKACGLLNA------LEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEK 163
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF--RSALKAYALM 160
F+ +++ +SW +I+ V+ G+ S+ALD F Q P F S LKA +
Sbjct: 164 VFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSST 223
Query: 161 GLV--GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLI 218
G++ G+ FL + +H S +V+ + G + I + +
Sbjct: 224 GMIYAGKQIHGFL-VRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTM--IS 280
Query: 219 WRTLLLSSRVHGDMKLAKYALDKLLELD 246
W +L+L G+ A +L EL+
Sbjct: 281 WSSLILGYAQEGEFVEAMGLFKRLQELN 308
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ IL C L + G Q Y+ K G + N LI++ +C + A F S
Sbjct: 8 NLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSM 67
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
PE+N +SW+ ++S V +G +L LF + + N TF + LKA L+
Sbjct: 68 PERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLL 120
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGL--ISHPAVGNCLININSRCGKIDDADL 102
D +++ +L +C + ++ G Q ++ + G S + L+++ +CG + A
Sbjct: 209 DEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARK 268
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
AF EK +SW+ +I G EA+ LFK Q + ++ S + +A L
Sbjct: 269 AFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFAL 328
Query: 163 VGEAYRL 169
+ + ++
Sbjct: 329 LRQGKQM 335
>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
Length = 843
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 158/318 (49%), Gaps = 39/318 (12%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ K E + ++ D+++ IL++C N + + +G Q A
Sbjct: 497 VSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQ 556
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K+ L S + + L+++ S+CG + D L F+ P ++ ++W ++ HG EA
Sbjct: 557 IIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEA 616
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L +F+ Q N TF + L+A MGLV + F SM Y ++P EHYS +V+
Sbjct: 617 LKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVD 676
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
+GR+G + LE I+G+ P + +IWRTLL ++HG++++A+ A +L+L+P
Sbjct: 677 IMGRSGQVSKALELIEGM-PFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSA 735
Query: 248 ------------GMY------------------VGC-WIEIQNKIYEFVSNEEL---TSE 273
GM+ GC WIEI+++++ F+ ++ + E
Sbjct: 736 AYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKE 795
Query: 274 VSDKLAEIEENMKELGFV 291
+ + L + + MK +G++
Sbjct: 796 IYENLDVLTDEMKWVGYM 813
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ + D+ V ++ ++ D + +L SC + G Q
Sbjct: 140 VSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGL 199
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G G+ L+++ ++C K+D + F S PEKN +SW+ II+ V +
Sbjct: 200 AVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGG 259
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L+LFK+ Q ++ +TF S ++ A
Sbjct: 260 LELFKEMQKAGVGVSQSTFASVFRSCA 286
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ C++ D EL + +Q + + + SC L +G+Q +
Sbjct: 241 VSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGH 300
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS--ARVNHG 126
K + +G +++ +C + DA F S P N S+ II AR + G
Sbjct: 301 ALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKG 357
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Q K S+ V N ++++ +CG + +A L F+ ++++SW II+A
Sbjct: 381 GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQ 440
Query: 125 HGHPSEALDLF 135
+G+ + L LF
Sbjct: 441 NGNEEKTLSLF 451
>gi|255563078|ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538234|gb|EEF39843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 530
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 124/244 (50%), Gaps = 9/244 (3%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
+ ++ +C +G Q Q + KR ++ G+ LI++ S+CG+I+DA AF+
Sbjct: 282 TFASVIGACSVLAGFEIGQQVQGQLLKREFFTNVKTGSALIDMYSKCGRIEDARRAFEQM 341
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
PEKN SW+ +I +G P EAL LF Q N TF AL A GLV +
Sbjct: 342 PEKNVFSWSSMIDGYGKNGRPDEALQLFHKMQDCCIEPNYVTFLGALSACGHAGLVSKGR 401
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
+F SME Y ++P EHY+ MV+ LGRAG EF+ G+ P K +W LL +
Sbjct: 402 EIFESMEREYSLKPGMEHYACMVDLLGRAGSLNLAWEFVMGM-PEKPSSDVWAALLSACN 460
Query: 228 VHGDMKLAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKE 287
+HG++++A A ++L +L+ G ++ + N + + D + E+ E MK
Sbjct: 461 LHGNVEMASVAANELFKLNAEGRSGAYVALSNTL--------AAAGKWDGVTEVREIMKS 512
Query: 288 LGFV 291
G +
Sbjct: 513 RGIL 516
>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Vitis vinifera]
Length = 877
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 158/318 (49%), Gaps = 39/318 (12%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ K E + ++ D+++ IL++C N + + +G Q A
Sbjct: 544 VSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQ 603
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K+ L S + + L+++ S+CG + D L F+ P ++ ++W ++ HG EA
Sbjct: 604 IIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEA 663
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L +F+ Q N TF + L+A MGLV + F SM Y ++P EHYS +V+
Sbjct: 664 LKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVD 723
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
+GR+G + LE I+G+ P + +IWRTLL ++HG++++A+ A +L+L+P
Sbjct: 724 IMGRSGQVSKALELIEGM-PFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSA 782
Query: 248 ------------GMY------------------VGC-WIEIQNKIYEFVSNEEL---TSE 273
GM+ GC WIEI+++++ F+ ++ + E
Sbjct: 783 AYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKE 842
Query: 274 VSDKLAEIEENMKELGFV 291
+ + L + + MK +G++
Sbjct: 843 IYENLDVLTDEMKWVGYM 860
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ + D+ V ++ ++ D + +L SC + G Q
Sbjct: 140 VSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGL 199
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G G+ L+++ ++C K+D + F S PEKN +SW+ II+ V +
Sbjct: 200 AVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGG 259
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L+LFK+ Q ++ +TF S ++ A
Sbjct: 260 LELFKEMQKAGVGVSQSTFASVFRSCA 286
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 61/149 (40%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ C++ D EL + +Q + + + SC L +G+Q +
Sbjct: 241 VSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGH 300
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + +G +++ +C + DA F S P N S+ II EA
Sbjct: 301 ALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEA 360
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALM 160
L +F+ Q ++ + A +A A++
Sbjct: 361 LGMFRLLQKSGLGLDEVSLSGAFRACAVI 389
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Q K S+ V N ++++ +CG + +A L F+ ++++SW II+A
Sbjct: 395 GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQ 454
Query: 125 HGHPSEALDLFKDKQWRYTS-MNPT--TFRSALKAYA 158
+G+ + L LF W S M P T+ S LKA A
Sbjct: 455 NGNEEKTLSLFV---WMLQSGMEPDEFTYGSVLKACA 488
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 53/130 (40%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
++S + WN ++ A + + E L + D ++ +L +C LN G
Sbjct: 437 MVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCG 496
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ + K L VG LI++ S+CG ++ A+ E+ +SW IIS
Sbjct: 497 MEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQ 556
Query: 126 GHPSEALDLF 135
EA F
Sbjct: 557 KQSEEAQKTF 566
>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g49142
gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
Length = 686
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 115/417 (27%), Positives = 191/417 (45%), Gaps = 67/417 (16%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN+++ +K A E V EL R++ D+ SI +L +C + L++G +
Sbjct: 275 VSWNVMIGVYMKNAMPVEAV-ELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHG 333
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ ++ LI + + N LI++ ++CG ++ A F++ ++ +SWT +ISA G +
Sbjct: 334 YIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCD 393
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+ LF Q + F + L A + GL+ E F M + Y I P EH + MV
Sbjct: 394 AVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMV 453
Query: 191 EALGRAGMFEEVLEFIKGIV--PGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP- 247
+ LGRAG +E FI+ + P + +W LL + RVH D + A DKL +L P
Sbjct: 454 DLLGRAGKVKEAYRFIQDMSMEPNE---RVWGALLGACRVHSDTDIGLLAADKLFQLAPE 510
Query: 248 --GMYV---------GCWIEIQN----------KIYEFVSNEEL---------------- 270
G YV G W E+ N K SN E+
Sbjct: 511 QSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQ 570
Query: 271 TSEVSDKLAEIEENMKELGFVLNR----------------SLYQTKMKAVALGLISFPH- 313
+ E+ +L + + MKELG+V + +++ K+ A+ L++
Sbjct: 571 SDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKL-AIVFALMNTKEE 629
Query: 314 ----GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+ K++ +CG H A + +S I RE++++D FH F+ G CSC D +
Sbjct: 630 EEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y+ +L +C + +G + TK GL S VGN L+++ +CG + +A L
Sbjct: 139 DHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVL 198
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
++ +SW ++ + +AL++ ++ + S + T S L A +
Sbjct: 199 DEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVS 252
>gi|296085287|emb|CBI29019.3| unnamed protein product [Vitis vinifera]
Length = 408
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 106/411 (25%), Positives = 181/411 (44%), Gaps = 65/411 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L +K + E L + C + S+ C P +A A
Sbjct: 7 VSWNSMLSGFVKCGNVEEAFGLFSEMP-CRDVVSWNSMLACYAQCGKP------NEALAL 59
Query: 72 MTKRGLIS-HPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ + + VG L+++ ++CGKI A F + K+ L+W II+ GH E
Sbjct: 60 FDQMQAVGVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKE 119
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A LFK+ + N TF + L A + G+V E +L M Y IEP EHY ++
Sbjct: 120 AQQLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVI 179
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ L RAG+ EE +E I G +P + P LL R+HG+ +L + +L+ L P
Sbjct: 180 DLLARAGLLEEAMELI-GTMPMEPNPCALGALLEGCRIHGNFELGEMVGKRLINLQPCHS 238
Query: 248 GMYV---------GCW-----------------------IEIQNKIYEFVSNE---ELTS 272
G Y+ W IE++ ++ FV+ + ++
Sbjct: 239 GRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESN 298
Query: 273 EVSDKLAEIEENMKE-LGFVLNR----------------SLYQTKMKAVALGLISFPHGM 315
++ +KL EI +K +G+ + +++ K+ A+A GL+
Sbjct: 299 KIYEKLNEIHTRLKSAIGYSADTGNGLLDMEEEDKEHALAVHSEKL-AIAYGLLHLDSKE 357
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C H + +S + E++V+D FHHF+DG+CSC D +
Sbjct: 358 AIRIVKNLRVCRDCHHVTKLISKVYGGEIIVRDRNRFHHFEDGECSCLDFW 408
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
PE+N +SW ++S V G+ EA LF + R + ++ S L YA G EA
Sbjct: 2 PERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCR----DVVSWNSMLACYAQCGKPNEAL 57
Query: 168 RLFLSMEEV 176
LF M+ V
Sbjct: 58 ALFDQMQAV 66
>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 651
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 103/401 (25%), Positives = 180/401 (44%), Gaps = 61/401 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A + + R+ +D+Y+I +L+SC + LN+G
Sbjct: 174 VSWNAMISCFSHAGLHHQAFSMYSRMANEGVCVDAYTIVALLSSCAHVSALNMGVMLHRI 233
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
S V N LI++ ++CG +++A FK +++ L+W +I HGH EA
Sbjct: 234 ACDIRCESSVFVCNALIDMYAKCGSLENAVGVFKGMRKRDVLTWNSMIIGYGVHGHGVEA 293
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F+ N TF L + GLV E F M +H+ P+ +HY MV+
Sbjct: 294 ISFFRKMVASGVRPNAVTFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVD 353
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLC---PLIWRTLLLSSRVHGDMKLAKYALDKLLEL--- 245
GRAG E+ LE I C P++WRTLL S ++H +++L + A+ KL++L
Sbjct: 354 LFGRAGQLEKALEMIH----TSSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAF 409
Query: 246 DPGMYV--------------------------------GCWIEIQNKIYEFVSNEELTSE 273
+ G YV WIEI +++++FV ++++ E
Sbjct: 410 NAGDYVLMTSIYSAANDAQGFASMRKLIRSHDLRTIPGWSWIEIGDQVHKFVIDDKMHPE 469
Query: 274 ---VSDKLAEI-----------EENMKELGFVLNRSL-----YQTKMKAVALGLISFPHG 314
+ +L E+ E++ + + +R L ++ A+A GL+ G
Sbjct: 470 SALIYSELGEVINRAILAGYKPEDSNRTAHTLSDRCLESADTSHSEKLAIAYGLMRTTAG 529
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHF 355
R+ K++ +C HS +++S RE++V+D FH F
Sbjct: 530 TTLRITKNLRVCRDCHSFTKYVSKAFNREIIVRDRVRFHQF 570
>gi|302791495|ref|XP_002977514.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
gi|300154884|gb|EFJ21518.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
Length = 673
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 98/390 (25%), Positives = 172/390 (44%), Gaps = 38/390 (9%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ L+ A + EL R+ L + ++ +L +C + + G + A
Sbjct: 283 VSWSGLIAALAEHGRGRDAIELFHRMDLDGIQPNEVTLLSVLEACASTGAIAEGRRTHAR 342
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
++ G + V N L+N+ +CG + A F + +N +SWT +++ +HGH EA
Sbjct: 343 VSGCGFEAETNVANALVNMYGKCGHLGSARTVFDAMTWRNVVSWTAMLAGYAHHGHTEEA 402
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+FK N TF S L + G+V + F M + I P EHY +++
Sbjct: 403 RRVFKAMALEGIQPNVITFVSVLFNCSHAGVVSDGLEQFHIMVGDFGIVPVTEHYGCVID 462
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDM----KLAKYALDKLLELDP 247
LGRAG EE E ++ +P + W +LL + +VH ++AK A D L
Sbjct: 463 LLGRAGWLEEAEELLR-TMPVEPDKAAWNSLLGACKVHSHTDRAKRIAKLACDLALPFAS 521
Query: 248 GMYV--------------------GCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKE 287
YV IE++ +++EFV+ + + + +AE++ +E
Sbjct: 522 APYVLLSNMYTDEEQQSDPEEDQCSSLIEVKGRVHEFVAGDWSHPRIEEIVAELQRLQEE 581
Query: 288 LGFVLNRSLYQTKMK-------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACR 334
+ + SL + + A+A G+++ G V+ + +C H A +
Sbjct: 582 MMILRGSSLCEEGGQEGSVQENEHSLKLAIAFGVLASLQGSSINVVNTRRICVECHDAAK 641
Query: 335 FMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+S I R++VV+D FHH + G CSC D
Sbjct: 642 VISKIAGRKIVVRDSYRFHHIEQGVCSCGD 671
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%)
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
Q + GL VG+ L++ +CG +D A F +N +SW+ +I+A HG
Sbjct: 239 QEDAIRLGLEGDLLVGSALVSALGKCGCLDQARAVFDRMERRNVVSWSGLIAALAEHGRG 298
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYR 168
+A++LF N T S L+A A G + E R
Sbjct: 299 RDAIELFHRMDLDGIQPNEVTLLSVLEACASTGAIAEGRR 338
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ Q + G + V LI+ +RCG ++ A AF P KN +SW +I+A H
Sbjct: 33 AEIQFRVVATGFDADVTVATALISALARCGDLEGAREAFDRIPAKNVVSWNSMIAALNEH 92
Query: 126 GHPSEALDLFK 136
GH + AL++++
Sbjct: 93 GHFARALEIYR 103
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 55/125 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ A + + E+ R++ S L SC L G
Sbjct: 80 VSWNSMIAALNEHGHFARALEIYRRMEPEGVKPSDISYIHALCSCSGLRDLEQGKSIHDR 139
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G + VGN L+N+ S+C ++D A AF+ K+ +SW +I+A G EA
Sbjct: 140 VATDGFDTQVFVGNALVNMYSKCRRLDLAREAFERIDSKDVVSWNSMIAAHSQLGGSDEA 199
Query: 132 LDLFK 136
L+ ++
Sbjct: 200 LETYR 204
>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 161/319 (50%), Gaps = 41/319 (12%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ K E ++ L G I D+++ +L+ C N + +G Q A
Sbjct: 508 VSWNSIISGFSSQKQSENAQRYFSQM-LEMGVIPDNFTYATVLDVCANMATIELGKQIHA 566
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K L S + + L+++ S+CG + D+ L F+ TP+++ ++W+ +I A HGH +
Sbjct: 567 QILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQ 626
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+ LF++ Q N T F S L+A A MG V + F M+ Y ++P EHYS MV
Sbjct: 627 AIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMV 686
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGR+ E L+ I+ + + +IWRTLL + ++ G++++A+ A + LL+LDP
Sbjct: 687 DLLGRSDQVNEALKLIESM-HFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDS 745
Query: 248 -------------GMY------------------VGC-WIEIQNKIYEFVSNEEL---TS 272
GM+ GC WIE++++++ F+ ++ +
Sbjct: 746 SAYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEPGCSWIEVRDEVHTFLVGDKAHPRSE 805
Query: 273 EVSDKLAEIEENMKELGFV 291
E+ ++ + + MK G+V
Sbjct: 806 EIYEQTHLLVDEMKWAGYV 824
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 65/147 (44%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN LL + E+ R++ D + +L +C +G Q
Sbjct: 104 VSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCL 163
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G + G+ L+++ S+C K+D A F+ PE+N + W+ +I+ V + E
Sbjct: 164 AIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEG 223
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L LFKD ++ +T+ S ++ A
Sbjct: 224 LKLFKDMLKVGMGVSQSTYASVFRSCA 250
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 1 LKLCSLISDVE----IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI------DSYSIC 50
++ C++ D+E + WN ++ A +E E+++ + L + D ++
Sbjct: 392 VEACTIFDDMERRDAVSWNAIIAA------HEQNEEIVKTLSLFVSMLRSTMEPDDFTYG 445
Query: 51 DILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK 110
++ +C LN G + + K G+ VG+ L+++ +CG + +A+ EK
Sbjct: 446 SVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEK 505
Query: 111 NSLSWTFIISARVNHGHPSEALDLF 135
++SW IIS + A F
Sbjct: 506 TTVSWNSIISGFSSQKQSENAQRYF 530
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 4/130 (3%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
++ IL C N LN G QA A M + V NCL+ + ++ A F
Sbjct: 7 FTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDR 66
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
P ++ +SW +I G+ A LF R + ++ S L Y G+ ++
Sbjct: 67 MPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPER----DVVSWNSLLSCYLHNGVNRKS 122
Query: 167 YRLFLSMEEV 176
+F+ M +
Sbjct: 123 IEIFVRMRSL 132
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 43/105 (40%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+ SC +GTQ + K +G +++ ++C ++ DA F + P
Sbjct: 245 VFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPP 304
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
S+ II +AL++F+ Q Y S + + AL A
Sbjct: 305 RQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTA 349
>gi|242054799|ref|XP_002456545.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
gi|241928520|gb|EES01665.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
Length = 640
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 108/413 (26%), Positives = 182/413 (44%), Gaps = 61/413 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF---IDSYSICDILNSCLNPILLNVGTQA 68
+ WN +L A + EL R++ G D+ +I +L+S + VG
Sbjct: 227 VSWNAVLSAHAQNGLAVDALELYRRMRSPEGSGVEPDAVTIVGVLSSAAHLGARGVGFDV 286
Query: 69 QAYMTKR--GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ Y+ +R G ++ + N LIN ++RCG + A F P K+ +SWT +I+ HG
Sbjct: 287 EHYVRQRIPGFHTNVQLCNALINFHARCGSLPRAQQLFDEMPRKSIVSWTALITGHGMHG 346
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
+ A+ LF+ + + A + GL E R F +ME VY + P+ EHY
Sbjct: 347 NGDVAVSLFERMVSEGIRPDNVAMVALFSACSHAGLYDEGRRYFSAMESVYKLRPTLEHY 406
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+ MV+ LGRAG EE E I + P +W LL + ++H ++ + + A +++EL+
Sbjct: 407 TCMVDLLGRAGRLEEARELISSM-PMPADGAVWGALLGACKIHKNVDVGEEAFTRVIELE 465
Query: 247 P---GMYV-------------------------------GC-WIEIQNKIYEFVSNEE-- 269
P G YV GC ++E + +++ F++++
Sbjct: 466 PKNVGYYVLMSNIYTDTGQLDCVARVRAMMRERGLKKEPGCSYVEHKGRVHLFMADDHSH 525
Query: 270 -LTSEVSDKLAEIEENMKELGFVLNRSLYQTKMK-----------------AVALGLISF 311
+ + + +E +KE + + K + AVA GL++
Sbjct: 526 PQARRIYELVIRLELMVKEKSGMRESEVAAAKGRMEKAAAQPLVGIHSEKLAVAFGLLNT 585
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G VIK++ +CG HS + +S R +V+D FH F G CSCKD
Sbjct: 586 EAGSEIVVIKNLRVCGDCHSFLKVVSATTNRAFLVRDASRFHRFDGGVCSCKD 638
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 105/412 (25%), Positives = 185/412 (44%), Gaps = 69/412 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN L+ Y+ L + + + ++ IL +C + +++G Y
Sbjct: 289 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVY 348
Query: 72 MTKR--GLISH-PAVGNCLININSRCGKIDDADLAFKSTPEKNSLS-WTFIISARVNHGH 127
+ K+ G++++ ++ LI++ ++CG ID A F S+ SLS W +IS HG
Sbjct: 349 INKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGR 408
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
+ A D+F + + TF L A + G++ +F SM Y I P EHY
Sbjct: 409 ANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYG 468
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
M++ LG +G+F+E E I +P + +IW +LL + ++HG+++L + KL++++P
Sbjct: 469 CMIDLLGHSGLFKEAEEMIN-TMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEP 527
Query: 248 ---GMYV---------GCW------------------------IEIQNKIYEFVSNEEL- 270
G YV G W IEI + ++EF+ ++L
Sbjct: 528 GNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLH 587
Query: 271 ----------------------TSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGL 308
+ S+ L E+EE +E + ++ A+A GL
Sbjct: 588 PQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWREGAL-----RHHSEKLAIAFGL 642
Query: 309 ISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKC 360
IS G ++K++ +C H A + +S I +RE++ +D F HF+DG C
Sbjct: 643 ISTKPGTKLTIMKNLRVCKNCHEATKLISKIYKREIIARDRTRFXHFRDGVC 694
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ ++ +Y+ EL + + + D ++ ++++C + +G +
Sbjct: 187 VSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHS 246
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
++ G S+ + N LI++ S+ G+++ A F K+ +SW +I + E
Sbjct: 247 WINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKE 306
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
AL LF++ + N T S L A A +G +
Sbjct: 307 ALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 339
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 4/156 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DSY+ +L SC + G Q ++ K G V LI++ ++ G+++DA F
Sbjct: 88 DSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVF 147
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ ++ +S+T +I+ V+ G+ A LF + + + ++ + + Y G
Sbjct: 148 DISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGK----DVVSWNAMISGYVETGNYK 203
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
EA LF M + ++ P E +V A ++ E
Sbjct: 204 EALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIE 239
>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 633
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 165/366 (45%), Gaps = 68/366 (18%)
Query: 57 LNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK---STPEKNSL 113
L+ + N G +A+ + R VG L+++ +CG +++A F+ +++ +
Sbjct: 276 LHSFVANGGRRARVRLNAR-------VGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVV 328
Query: 114 SWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFL 171
+W +I+ HG EAL+ F Q R + PT TF L A + GLV E LF
Sbjct: 329 AWNAMINGYAMHGRSREALEAFG--QLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFA 386
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231
+MEE Y I P EHY MV+ LGRAG EE + ++ + K +W +LL + R+H +
Sbjct: 387 AMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSM-KAKPDAAMWASLLGACRLHKN 445
Query: 232 MKLAKYALDKLLE---LDPGMYV---------GCW-----------------------IE 256
+ L + D L+ + G YV G W +E
Sbjct: 446 LALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVE 505
Query: 257 IQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL---------------YQ 298
+ ++ EFV+ + ++E+ KL E+ + G V + L
Sbjct: 506 VGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIARARGHVPHTELVLHDLDDAAKERALAVH 565
Query: 299 TKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDG 358
++ A+A GLIS P +++K++ C H+ + +S R++V +D FHHF DG
Sbjct: 566 SEKLALAFGLISTPPRTGIKIVKNLRACADCHAVLKLVSEATGRKIVFRDRNRFHHFVDG 625
Query: 359 KCSCKD 364
CSC D
Sbjct: 626 SCSCGD 631
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
+++ ++ G++DDA F + P K+ + W ++ HG PSEAL LF+
Sbjct: 192 TAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVE 251
Query: 145 MNPTTFRSALKAYALMG 161
+ + AL A A +G
Sbjct: 252 PDEVSVVLALSAVAQLG 268
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 135/277 (48%), Gaps = 10/277 (3%)
Query: 13 PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
PWN L+ ++ K + L +Q D ++ ++L++C L +G Y+
Sbjct: 321 PWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYI 380
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
+R + +G L+++ S+CG I+ A FK PEKN+L+WT +IS NHGH A+
Sbjct: 381 DRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAI 440
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA 192
F+ + TF L A GLV E F M YH+E +HYS MV+
Sbjct: 441 KYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDL 500
Query: 193 LGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVG 252
LGRAG +E E + +P + ++W L + R+HG++ L + A KL+ELDPG
Sbjct: 501 LGRAGYLDEA-EHLVNTMPMEPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPG---- 555
Query: 253 CWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELG 289
+ IY ++N + + K ++ M+ LG
Sbjct: 556 -----DSGIYVLLANMYAEANMRKKADKVRVMMRHLG 587
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 13/156 (8%)
Query: 95 GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
G +DDA F PE++ W +++ V EAL LF D Q + T + L
Sbjct: 302 GLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLL 361
Query: 155 KAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM-----VEALGRAGMFEEVLEFIKGI 209
A + +G L + M ++I+ S+M V+ + G E+ + K I
Sbjct: 362 SACSQLG------ALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEI 415
Query: 210 VPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
P K L W ++ HG +A +++EL
Sbjct: 416 -PEK-NALTWTAMISGLANHGHADVAIKYFQRMIEL 449
Score = 41.2 bits (95), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 5/139 (3%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L +G + Y+ G+ + N ++++ +CG ++ A F+ +K +SWT +I
Sbjct: 238 LELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVG 297
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
G +A +F + R + + + + Y EA RLF M+E +EP
Sbjct: 298 YAQFGLMDDARKVFDEMPER----DVFPWNALMTGYVQCKRGKEALRLFHDMQEAM-VEP 352
Query: 182 SEEHYSIMVEALGRAGMFE 200
+ ++ A + G E
Sbjct: 353 DDITMVNLLSACSQLGALE 371
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 93/251 (37%), Gaps = 26/251 (10%)
Query: 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-----DSYSICDILNSCLNPILLN 63
D P+N L+A D +V L L C + D + +L +C N
Sbjct: 81 DSASPYNAALRALSLCTDRGLVTRCLP---LYCSLLRSARPDHLTFPFLLKACARLQERN 137
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G + G + V N ++ + C + +A F + ++ +SW +I V
Sbjct: 138 YGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYV 197
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG--------EAYRLFLSMEE 175
G P EAL++F WR T ++G+V E R E
Sbjct: 198 RRGVPREALEMF----WRMVGDGAVTPDEV----TMIGVVSGSAQLRDLELGRRLHGYVE 249
Query: 176 VYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLA 235
+ + + +++++ + G E +GI K + W T+++ G M A
Sbjct: 250 SHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGI--DKKTIVSWTTMIVGYAQFGLMDDA 307
Query: 236 KYALDKLLELD 246
+ D++ E D
Sbjct: 308 RKVFDEMPERD 318
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 106/417 (25%), Positives = 185/417 (44%), Gaps = 70/417 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN L+ Y+ L + + + ++ IL +C + + +G Y
Sbjct: 302 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVY 361
Query: 72 MTKR--GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ KR G+ + + LI++ ++CG I+ A F S ++ SW +I HG +
Sbjct: 362 INKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRAN 421
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
A D+F + + TF L A + G++ +F SM+E Y I P EHY M
Sbjct: 422 AAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCM 481
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLEL-- 245
++ LG +G+F+E E I + ++ P +IW +LL + +++ +++L + L+++
Sbjct: 482 IDLLGHSGLFKEAEEMINTM---EMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEP 538
Query: 246 -DPGMYV---------GCW-----------------------IEIQNKIYEFV------- 265
+PG YV G W IEI + ++EF+
Sbjct: 539 KNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHP 598
Query: 266 SNEEL----------------TSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLI 309
N E+ + S+ L E+EE KE + ++ A+A GLI
Sbjct: 599 RNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGAL-----RHHSEKLAIAFGLI 653
Query: 310 SFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
S G ++K++ +C H A + +S I +RE++ +D FHHF+DG CSC D +
Sbjct: 654 STKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/252 (20%), Positives = 109/252 (43%), Gaps = 10/252 (3%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
I DV + WN ++ + + + EL + + D ++ ++++C + +G
Sbjct: 197 IKDV-VSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGR 255
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q +++ G S+ + N LI++ +CG+++ A F+ K+ +SW +I +
Sbjct: 256 QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMN 315
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL--VGEAYRLFLSMEEVYHIEPSEE 184
EAL LF++ S N T S L A A +G +G ++++ + + + +
Sbjct: 316 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYIN-KRLKGVANASS 374
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL-- 242
H + +++ + G E + I+ L W ++ +HG A ++
Sbjct: 375 HRTSLIDMYAKCGDIEAAQQVFDSILNRSLSS--WNAMIFGFAMHGRANAAFDIFSRMRK 432
Query: 243 --LELDPGMYVG 252
+E D +VG
Sbjct: 433 NEIEPDDITFVG 444
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 5/154 (3%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y+ +L SC G Q ++ K G V LI++ + G+++DA F
Sbjct: 104 YTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQ 163
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
+ ++ +S+T +I+ + G+ + A +F + + + ++ + + YA G EA
Sbjct: 164 SSHRDVVSYTALITGYASKGYIASAQKMFDEIPIK----DVVSWNAMISGYAETGNNKEA 219
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
LF M + ++ P E +V A ++ E
Sbjct: 220 LELFKEMMKT-NVRPDESTMVSVVSACAQSASIE 252
>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
Length = 1012
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 107/409 (26%), Positives = 184/409 (44%), Gaps = 73/409 (17%)
Query: 1 LKLCSLISDV-EIPWNLLLKACIKAKDYEMVHEL---LERIQLCCGFIDSYSICDILNSC 56
LK+ S + D E+ WN ++ ++ E + ++ Q+ C + +YS +L +C
Sbjct: 419 LKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQV-TYS--SVLRAC 475
Query: 57 LNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWT 116
+ + Q + K + +GN LI+ ++CG I DA F+ E++ +SW
Sbjct: 476 ASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWN 535
Query: 117 FIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEV 176
IIS HG ++AL+LF N TF + L + GLV LF SM
Sbjct: 536 AIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRID 595
Query: 177 YHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAK 236
+ I+PS EHY+ +V LGRAG + L+FI G +P ++WR LL S +H ++ L +
Sbjct: 596 HGIKPSMEHYTCIVRLLGRAGRLNDALQFI-GDIPSAPSAMVWRALLSSCIIHKNVALGR 654
Query: 237 YALDKLLELDP----------GMYVGC-------------------------WIEIQNKI 261
++ +K+LE++P MY W+EI+ +I
Sbjct: 655 FSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEI 714
Query: 262 YEF-----------------------VSNEELTSEVSDKLAEIEENMKELGFVLNRSLY- 297
+ F S E +++ L ++++ K R L+
Sbjct: 715 HAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQK------TRMLWV 768
Query: 298 QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVV 346
++ A+A GL+ P G P R++K++ C H+A +S I++RE++V
Sbjct: 769 HSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIV 817
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 94/220 (42%), Gaps = 3/220 (1%)
Query: 23 KAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA 82
++ E EL R+ + YS+ +L +C N + L+ G Q + K G S
Sbjct: 341 QSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLF 400
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
VGN L++ ++C +D + F S + N +SW I+ G EAL +F + Q
Sbjct: 401 VGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQ 460
Query: 143 TSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV 202
T+ S L+A A + A ++ S+E+ + S +++ + G +
Sbjct: 461 MPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNS-LIDTYAKCGYIRDA 519
Query: 203 LEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
L+ + ++ + + W ++ +HG A D++
Sbjct: 520 LKVFQHLMERDI--ISWNAIISGYALHGQAADALELFDRM 557
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 15/146 (10%)
Query: 3 LCSLISDVEIPWNLLLK----------ACIKAKD-YEMVHELLERIQLCCGFIDSYSICD 51
LCSL+SD E +N +++ +C D E + ++++ + +++
Sbjct: 209 LCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTS 268
Query: 52 ILNS--CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE 109
+L + CL ++L G A T + P VG L+++ ++CG I DA LAF+ P
Sbjct: 269 VLKAAVCLPSVVLGKGIHGCAIKTLND--TEPHVGGALLDMYAKCGDIKDARLAFEMIPY 326
Query: 110 KNSLSWTFIISARVNHGHPSEALDLF 135
+ + +F+IS +A +LF
Sbjct: 327 DDVILLSFMISRYAQSNQNEQAFELF 352
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 2/125 (1%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV--GNCLININSRCGKIDDAD 101
+DS++ L C+ G ++ +RG + + N L+N+ + G + A
Sbjct: 57 VDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASAR 116
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
F PE+N +S+ ++ A G A LF+ +W +N + LK M
Sbjct: 117 RLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMD 176
Query: 162 LVGEA 166
G A
Sbjct: 177 AAGLA 181
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 58/140 (41%)
Query: 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRG 76
L++A + D+E L R++ ++ + + +L + + + K G
Sbjct: 133 LVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLG 192
Query: 77 LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
+ VG+ LI+ S C + DA+ F K+++ WT ++S + P A +F
Sbjct: 193 HDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFS 252
Query: 137 DKQWRYTSMNPTTFRSALKA 156
+ NP S LKA
Sbjct: 253 KMRVSGCKPNPFALTSVLKA 272
>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
Length = 1161
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 112/410 (27%), Positives = 185/410 (45%), Gaps = 58/410 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W+ L+ + ++ L +R+Q IDS+++ I+ + LL G Q QA
Sbjct: 650 ISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQAL 709
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K +V N ++++ +CG +D+A+ F K+ +SWT +I+ HG ++
Sbjct: 710 AVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKS 769
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ +F + + + + L A + G++ E LF + E + I+P EHY+ +V+
Sbjct: 770 VRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVD 829
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD---PG 248
LGRAG +E I +P K IW+TLL RVHGD++L K LL +D P
Sbjct: 830 LLGRAGRLKEAKHLID-TMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPA 888
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEE---LTSE 273
YV W+EI+ +++ F S E+ LT
Sbjct: 889 NYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPV 948
Query: 274 VSDKLAEIEENMK-ELGFV--LNRSLY-----------QTKMKAVALGLISFPHGM---- 315
+ + L E E ++ ELG+V L L+ + + +A+GL G+
Sbjct: 949 IQETLKEAERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQKG 1008
Query: 316 -PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
RV K++ +C H + +S I + VV+D FH F+DG CSC D
Sbjct: 1009 KTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGD 1058
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 13/208 (6%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F + C +LN+ L G Q + K G VGN L+++ S+CG+I++A+
Sbjct: 481 FSTNLKACGLLNA------LEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEK 534
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF--RSALKAYALM 160
F+ +++ +SW +I+ V+ G+ S+ALD F Q P F S LKA +
Sbjct: 535 VFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSST 594
Query: 161 GLV--GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLI 218
G++ G+ FL + +H S +V+ + G + I + +
Sbjct: 595 GMIYAGKQIHGFL-VRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTM--IS 651
Query: 219 WRTLLLSSRVHGDMKLAKYALDKLLELD 246
W +L+L G+ A +L EL+
Sbjct: 652 WSSLILGYAQEGEFVEAMGLFKRLQELN 679
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGL--ISHPAVGNCLININSRCGKIDDADL 102
D +++ +L +C + ++ G Q ++ + G S + L+++ +CG + A
Sbjct: 580 DEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARK 639
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
AF EK +SW+ +I G EA+ LFK Q + ++ S + +A L
Sbjct: 640 AFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFAL 699
Query: 163 VGEAYRL 169
+ + ++
Sbjct: 700 LRQGKQM 706
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N LI++ +C + A F S PE+N +SW+ ++S V +G +L LF + +
Sbjct: 416 NYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIY 475
Query: 145 MNPTTFRSALKAYALM 160
N TF + LKA L+
Sbjct: 476 PNEFTFSTNLKACGLL 491
>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15130 [Vitis vinifera]
gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 104/414 (25%), Positives = 189/414 (45%), Gaps = 62/414 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W+ L++ + + +L +++ +D + + ++ + L+ G Q Y
Sbjct: 275 ISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCY 334
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K +V N +I++ +CG ++A+ F +N +SWT +I+ HG +A
Sbjct: 335 ILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKA 394
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF Q ++ + + L A + GL+ E+ F + + ++P+ EHY+ MV+
Sbjct: 395 IHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVD 454
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLELD--- 246
LGRAG +E I+ + KL P IW+TLL + RVHG++++ + + L +D
Sbjct: 455 ILGRAGQLKEAKNLIENM---KLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDN 511
Query: 247 -------------PGMYVGC-------------------WIEIQNKIYEFVSNEE---LT 271
G + C W+EI +I+ F ++ LT
Sbjct: 512 PVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIHFFYGGDDTHPLT 571
Query: 272 SEVSDKLAEIEENMKE-------LGFVLNRSLYQTK-------MKAVALGLISFPHGMPT 317
++ + L E+E +KE L F L+ ++K + +A+GL GM
Sbjct: 572 EKIHEMLKEMERRVKEEVGYAYGLRFALHDVEEESKEENLRVHSEKLAIGLALVCDGMEK 631
Query: 318 -----RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV K++ +CG H + +S I+++ VV+D FH F+DG CSC D +
Sbjct: 632 KGGVIRVFKNLRVCGDCHEFIKGLSKILKKVFVVRDANRFHRFEDGLCSCGDYW 685
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ L +C ++ G Q K G VGN I++ S+CG+I A+ F
Sbjct: 104 NEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVF 163
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
P +N +SW +I+ + G+ ++L LF+ Q + + TF S LKA +G +
Sbjct: 164 NKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIR 223
Query: 165 EAYRLFLSM 173
++ S+
Sbjct: 224 GGTQIHASL 232
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 73/160 (45%), Gaps = 2/160 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + L +R+Q D ++ L +C + GTQ A
Sbjct: 172 VSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHAS 231
Query: 72 MTKRGL-IS-HPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ RG IS + + ++++ ++CG + +A F +KN +SW+ +I G+
Sbjct: 232 LITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLL 291
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
EA+DLF+ + ++++ + +A + LV + ++
Sbjct: 292 EAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQM 331
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 2/157 (1%)
Query: 49 ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP 108
+ +L +C L + G Q A G + N LI++ +C ++D A F
Sbjct: 7 LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML 66
Query: 109 EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYR 168
E+N +SWT ++ + G+ +L L + + N TF ++LKA +G+V +
Sbjct: 67 ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQ 126
Query: 169 LF-LSMEEVYHIEPSEEHYSI-MVEALGRAGMFEEVL 203
+ + ++ + + +I M GR GM E+V
Sbjct: 127 IHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVF 163
>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
Length = 544
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 159/335 (47%), Gaps = 52/335 (15%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
+G L+++ ++CG ++ A F +N+ +W +I+ +G+ ++ALD+F+ +
Sbjct: 211 LGTALLDMYAKCGAVELALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDR 270
Query: 143 TSM-NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEE 201
T + + TF L A + G V F +E+ Y I EHY+ MV+ L R+G +E
Sbjct: 271 TVVPDEVTFVGVLLACSHGGFVDVGREHFHMIEKKYGIRLILEHYACMVDLLARSGHLQE 330
Query: 202 VLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMY---------VG 252
+ I G+ P K ++WR LL R+H D+K+A+ A+ ++ G + VG
Sbjct: 331 AHKIIAGM-PMKPDAVVWRALLGGCRLHKDVKMAETAISEMEATCSGDHVLLSNLYAAVG 389
Query: 253 CW-----------------------IEIQNKIYEFVSNEELTSEVSD---KLAEIEENMK 286
W IEI + I+EFVS ++ +D KLAEI M+
Sbjct: 390 RWSGVEDVRRTMRSKGIEKIPGCSSIEINDSIHEFVSGDKSHPSYNDIHAKLAEISARMQ 449
Query: 287 ELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHS 331
+ G+V + + ++ A+A GLI P + R++K++ C H
Sbjct: 450 QQGYVTETAEVFYDVEEEEKEQALGHHSEKLAIAFGLIGGPPNVAIRIVKNLRFCADCHK 509
Query: 332 ACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ +S I E+VV+D FHHF +G CSC D +
Sbjct: 510 FAKLVSQIYHWEIVVRDRARFHHFTEGACSCNDFW 544
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A + K GL + V N LI + G +DDA F ++++S+ +I A G
Sbjct: 32 HALLVKLGLQPYARVHNALIQAYAASGLVDDARRVFDGMSHRDTVSFNSMIHAHAMSGDV 91
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSM 173
A LF+ R S P T+ S + G V A RLF M
Sbjct: 92 VSARRLFE----RVPSPTPVTWTSMVAGLCRAGDVAAARRLFEEM 132
>gi|224079119|ref|XP_002305756.1| predicted protein [Populus trichocarpa]
gi|222848720|gb|EEE86267.1| predicted protein [Populus trichocarpa]
Length = 530
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 121/232 (52%), Gaps = 17/232 (7%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
+G Q Q + K G + +G+ LI++ S+CG+I+DA F P +N SWT +I
Sbjct: 296 FEIGQQVQCQLMKSGFFNGVKMGSALIDMYSKCGRIEDARRVFNYMPVRNVFSWTSMIDG 355
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
+G P EAL+LF Q N TF AL A GLV + +F SME Y +P
Sbjct: 356 YGKNGEPWEALELFHRMQQCNIEPNYVTFLGALSACGHAGLVTKGREIFDSMERDYSTKP 415
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
EHY+ MV+ LGRAG ++ E +KG+ P K +W LL S +HG++++A+ A +K
Sbjct: 416 RMEHYACMVDLLGRAGNLQQAWELVKGM-PEKPNSDVWAALLSSCNMHGNVEMARVAANK 474
Query: 242 LLELD----PGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELG 289
L +++ PG YV +SN +E D ++E+ E MK G
Sbjct: 475 LFKINAIGRPGAYVA------------LSNTLAAAERWDSVSELREMMKLRG 514
>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25970-like [Vitis vinifera]
Length = 829
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/332 (29%), Positives = 155/332 (46%), Gaps = 43/332 (12%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
SL + + WN +L ++ E + E ++ ID Y+ +L SC + L +
Sbjct: 365 SLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQL 424
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Q + K G + V + LI + S+CG I+DA +F +TP+ +S++W +I
Sbjct: 425 GQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQ 484
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
HG ALDLF + R ++ TF + L A + +GLV E + SME Y I P E
Sbjct: 485 HGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRME 544
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
HY+ M++ LGRAG +E I+ + P + ++W+TLL + R GD++LA LLE
Sbjct: 545 HYACMIDLLGRAGRLDEAKALIEAM-PFEPDAMVWKTLLGACRTCGDIELASQVASHLLE 603
Query: 245 LDPG---MYV--------------------------------GCWIEIQNKIYEFVSNEE 269
L+P YV WIE++N++ F N E
Sbjct: 604 LEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRSF--NAE 661
Query: 270 LTS-----EVSDKLAEIEENMKELGFVLNRSL 296
S E+ +L E+ E ++ L +V N +
Sbjct: 662 DRSHPNCEEIYLRLGELMEEIRRLDYVANSEI 693
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 63/139 (45%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + ++E E L+ ++ +D YS IL + VG Q +
Sbjct: 66 VSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSM 125
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M K G + G+ L+++ ++C +++DA FKS +NS++W +IS G A
Sbjct: 126 MVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTA 185
Query: 132 LDLFKDKQWRYTSMNPTTF 150
L + ++ TF
Sbjct: 186 FWLLDCMELEGVEIDDGTF 204
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 33/231 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ + D LL+ ++L ID + +L +P L + TQ A
Sbjct: 167 VTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAK 226
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSL-SWTFIISARVNHGHPSE 130
+ K GL S V N +I S CG I+DA+ F E L +W +++A + + E
Sbjct: 227 IVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEE 286
Query: 131 ALDLFKDKQ--------WRYTSMNPTTFRSALKAY--ALMGLVGEAYRLFL--------- 171
A LF + Q + YTS+ F + + +L GLV + FL
Sbjct: 287 AFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIA 346
Query: 172 --------SMEEVYHIEPSEEH-----YSIMVEALGRAGMFEEVLEFIKGI 209
SM+E +I S E+ ++ ++ ++G+ E+ L+F + +
Sbjct: 347 MYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENM 397
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 11/229 (4%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L A + E +L +Q+ D Y+ ++++ G
Sbjct: 269 VTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGL 328
Query: 72 MTKRGLISHPAVGNCLIN--INSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ KRGL + N LI + S +D+A F+S K+ +SW I++ G
Sbjct: 329 VIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSE 388
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKA---YALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
+AL F++ + +Y ++ F + L++ A + L + + L L EP+
Sbjct: 389 DALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKS----GFEPNGFVA 444
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLA 235
S ++ + G+ E+ + P K + W +L+ HG K+A
Sbjct: 445 SSLIFMYSKCGVIEDARKSFDA-TP-KDSSIAWNSLIFGYAQHGRGKIA 491
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 7/181 (3%)
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G + N +I+ ++CG+I A F T +++++SW +I+ VN G+ AL+
Sbjct: 27 KSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALE 86
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
K + +++ +F S LK A +G V E + SM E + S +++
Sbjct: 87 FLKSMKRYGFAVDGYSFGSILKGVACVGYV-EVGQQVHSMMVKMGYEGNVFAGSALLDMY 145
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL----LELDPGM 249
+ E+ E K I + W L+ GD A + LD + +E+D G
Sbjct: 146 AKCERVEDAFEVFKSI--NIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGT 203
Query: 250 Y 250
+
Sbjct: 204 F 204
>gi|356555295|ref|XP_003545969.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
mitochondrial-like [Glycine max]
Length = 626
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/380 (26%), Positives = 173/380 (45%), Gaps = 60/380 (15%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F D +I +L +C L + + GL + + L+N+ S+ G+++ +
Sbjct: 251 FPDEATILSLLQACEKLPLGRLVEAIHGVIFTCGLNENITIATTLLNLYSKLGRLNVSHK 310
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F + + ++ T +++ HGH EA++ FK + TF L A + GL
Sbjct: 311 VFAEISKPDKVALTAMLAGYAMHGHGKEAIEFFKWTVREGMKPDHVTFTHLLSACSHSGL 370
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V + F M + Y ++P +HYS MV+ LGR GM + IK + P + +W L
Sbjct: 371 VMDGKYYFQIMSDFYRVQPQLDHYSCMVDLLGRCGMLNDAYRLIKSM-PLEPNSGVWGAL 429
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP----------------GMY---------------- 250
L + RV+ ++ L K A + L+ L+P G++
Sbjct: 430 LGACRVYRNINLGKEAAENLIALNPSDPRNYIMLSNIYSAAGLWSDASKVRALMKTKVFI 489
Query: 251 --VGC-WIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFV------------- 291
GC +IE NKI+ FV ++ + ++ KL EI +KE+GFV
Sbjct: 490 RNAGCSFIEHGNKIHRFVVDDYSHPDSDKIHRKLEEIMRKIKEVGFVSETESILHDVDEE 549
Query: 292 -----LNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVV 346
+N+ ++ A+A GL+ MP +IK++ +C H+ +F+S I +R +++
Sbjct: 550 VKTDMINK---HSEKIALAFGLLVSNADMPLVIIKNLRICLDCHNTAKFVSLIEKRTIII 606
Query: 347 KDPGSFHHFKDGKCSCKDAY 366
+D FHHF DG CSC D +
Sbjct: 607 RDSKRFHHFSDGLCSCADYW 626
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K G+ V N IN+ + G +D A F + PE+N +SW +++ +G P+EA+
Sbjct: 180 VKLGMELEVKVVNAFINMYGKFGCVDSAFKLFWALPEQNMVSWNSMLAVWTQNGIPNEAV 239
Query: 133 DLFK 136
+ F
Sbjct: 240 NYFN 243
>gi|356546597|ref|XP_003541711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial-like [Glycine max]
Length = 525
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 143/280 (51%), Gaps = 11/280 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVH-ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ +N +++ K +Y M E+ +Q + + ++ +C +G Q Q+
Sbjct: 239 VAFNAMIEGYSKTSEYAMRSLEVYIDMQRLNFRPNVSTFASVIGACSMLAAFEIGQQVQS 298
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K + +G+ LI++ ++CG++ DA F +KN SWT +I +G P E
Sbjct: 299 QLMKTPFYADIKLGSALIDMYAKCGRVVDARRVFDCMLKKNVFSWTSMIDGYGKNGFPDE 358
Query: 131 ALDLFKDKQWRYTSM-NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
AL LF Q Y + N TF SAL A A GLV + + +F SME Y ++P EHY+ M
Sbjct: 359 ALQLFGKIQTEYGIVPNYVTFLSALSACAHAGLVDKGWEIFQSMENEYLVKPGMEHYACM 418
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249
V+ LGRAGM + EF+ + P + +W LL S R+HG++++AK A ++L +L+
Sbjct: 419 VDLLGRAGMLNQAWEFVMRM-PERPNLDVWAALLSSCRLHGNLEMAKLAANELFKLNATG 477
Query: 250 YVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELG 289
G ++ + N + E +T E+ E MKE G
Sbjct: 478 RPGAYVALSNTLAAAGKWESVT--------ELREIMKERG 509
>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
Length = 772
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 108/403 (26%), Positives = 189/403 (46%), Gaps = 66/403 (16%)
Query: 11 EIPWNLLLKACIK----AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
++ WN ++ I AK ++V +L+ Q +DS+ +L++ + L G
Sbjct: 304 DVTWNSMISGYIHNELLAKALDLVWFMLQTGQR----LDSFMYATVLSAFASVATLERGM 359
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ A + L S VG+ L+++ S+CG++D A F + P +NS SW +IS HG
Sbjct: 360 EVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHG 419
Query: 127 HPSEALDLFKDKQWR-YTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
EAL LF + + T + TF L A + GL+ E ++ F SM + Y + P EH
Sbjct: 420 QGEEALKLFANMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEH 479
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS-SRVHG-DMKLAKYALDKLL 243
+S M + LGRAG +++ +FI + P K LIWRT+L + R +G +L K A + L
Sbjct: 480 FSCMADLLGRAGELDKLEDFIDKM-PVKPNVLIWRTVLGACCRANGRKAELGKKAAEMLF 538
Query: 244 ELDP----------GMYVG-------------------------CWIEIQNKIYEFVSNE 268
+L+P MY W+ +++ ++ FV+ +
Sbjct: 539 QLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGD 598
Query: 269 EL---TSEVSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLIS 310
+ T + KL E+ M++ G+V Y ++ AVA L +
Sbjct: 599 KSHPDTDVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAA 658
Query: 311 -FPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
+P R++K++ +CG HSA +++S I R+++++D +
Sbjct: 659 QRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRY 701
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 62 LNVGTQAQAYMTKRGLISH-PAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L G + ++ GL+ +GN L+N+ ++CG I DA F EK+S+SW +I+
Sbjct: 49 LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMIT 108
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSM 145
+G EA++ RY SM
Sbjct: 109 GLDQNGCFIEAVE-------RYQSM 126
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 3 LCSLISDVEIPWNLLLKACIKAKDY-EMV--HELLERIQLCCGFIDSYSICDILNSCLNP 59
C ++ + WN ++ + + E V ++ + R ++ G S+++ L+SC +
Sbjct: 92 FCFMMEKDSVSWNSMITGLDQNGCFIEAVERYQSMRRHEILPG---SFTLISSLSSCASL 148
Query: 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
+G Q K G+ + +V N L+ + + G +++ F S PE + +SW II
Sbjct: 149 KWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSII 208
Query: 120 SA 121
A
Sbjct: 209 GA 210
>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
Length = 752
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 140/278 (50%), Gaps = 11/278 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W ++ ++ + +LL ++ S C L+SC + L VG Q
Sbjct: 183 ISWTTVINGYVRMGKLDEARQLLNQMPYRNKPDQSTFACG-LSSCAHLAALQVGKQLHQL 241
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G + V N LI + ++CG I A+L FK + +SW +I+A +G+ EA
Sbjct: 242 VMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREA 301
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF + + + TF L A + +GL+ + +LF M + Y+IEP EHY+ MV+
Sbjct: 302 LKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVD 361
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYV 251
LGRAG EE + ++G+ IW LL + R+HG+++LAK+A +KLLE +P
Sbjct: 362 LLGRAGRLEEAFQLVRGMKINANAG-IWGALLGACRIHGNLELAKFAAEKLLEFEPH--- 417
Query: 252 GCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELG 289
+ Y +SN + + D++A + MKE G
Sbjct: 418 ------KTSNYVLLSNMQAEAGRWDEVARVRRLMKEKG 449
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR 151
+R GKI +A F P +N ++W +I+A V + H EA+ LF + N ++
Sbjct: 131 ARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFME----MPEKNSISWT 186
Query: 152 SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
+ + Y MG + EA +L M Y +P + ++
Sbjct: 187 TVINGYVRMGKLDEARQLLNQMP--YRNKPDQSTFA 220
>gi|414592000|tpg|DAA42571.1| TPA: hypothetical protein ZEAMMB73_154468 [Zea mays]
Length = 872
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 108/408 (26%), Positives = 176/408 (43%), Gaps = 58/408 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCG--FIDSYSICDILNSCLNPILLNVGTQAQ 69
I WN LL A ++ +YE ++ G FID + + +L C + +G Q
Sbjct: 464 IAWNSLLLASVRGGEYEKALSTFLQMFRSSGAEFIDEFMLTSVLGVCGSLGFAELGKQMH 523
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ K GL+S VGN +I++ +CG++ DA F+ ++ +SW +I+A +
Sbjct: 524 TFAAKSGLLSARGVGNAIISMYGKCGELKDAISLFERMSCRDLVSWNAMITAHLLLHQGD 583
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKA--YALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
+ L ++ + + + TF + A + + +LFLSM Y IEP+ EHY+
Sbjct: 584 DILKIWSEMERSMVRPDSITFLLVISACSHTSSDSTDKCRKLFLSMPSTYGIEPAMEHYA 643
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL-- 245
V LG G F+E + I G+ P + L+WR+LL S H +M + + A+ LL L
Sbjct: 644 AFVYVLGCWGRFDEAEQLIGGM-PLQPGALVWRSLLDSCSKHSNMAVRRRAMKHLLALEP 702
Query: 246 -DPGMYV--------------------------------GCWIEIQNKIYEFVSNEELTS 272
DP YV W N ++ F + ++
Sbjct: 703 QDPSTYVLTSNLLSESARWRSSENTRLEMYEKGMRKIPARSWTFHGNMVHSFFARDKSHP 762
Query: 273 EVSDKLAEIE----ENMK-----ELGFVLNRS---------LYQTKMKAVALGLISFPHG 314
+ D A ++ E +K + FVL+ +Y + A GL+ G
Sbjct: 763 QSRDIYAGLDVLILECIKAGYEPDTTFVLHDVEEYQKRHFLMYHSMKLASMYGLLMAGPG 822
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
RV+K++ MCG HS S + + V+D FH F+ GKCSC
Sbjct: 823 QTIRVVKNIRMCGDCHSFLEHASAATGKVISVRDSSGFHIFRGGKCSC 870
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 32 ELLERIQLCCGFIDS-YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI 90
ELL R++L G + + Y+ + +C +GTQ A K G S V N ++ +
Sbjct: 135 ELLGRMRLADGLLPTEYTFVGLFTACARRGNPRLGTQVHALAAKSGHSSLLLVANAILGM 194
Query: 91 NSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKD 137
+CG+ DA AF ++ SW +++ V G EA ++F +
Sbjct: 195 YVKCGRFGDAMRAFDGMDRRDVSSWNAVLAGLVELGRHDEAFEMFGE 241
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 6/146 (4%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN +L ++ ++ E+ ++ D +S+ +L + + G A
Sbjct: 219 WNAVLAGLVELGRHDEAFEMFGEMRASGNVRADRFSLSALLTAAGEGVGQLQGEAVHALS 278
Query: 73 TKRGLISHPAVGNCLININSRCG-KIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K GL + +VGN LI + G ++D F+ P K+ +SWT +++ + G A
Sbjct: 279 FKSGLETDLSVGNALIGFYAEHGASVEDVVSVFQRMPVKDVISWTGLLNGYMEFGLVDMA 338
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAY 157
LD+F+ R N T+ + L +
Sbjct: 339 LDVFE----RMPQRNFVTYNAVLTGF 360
>gi|356495756|ref|XP_003516739.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g71420-like [Glycine max]
Length = 782
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 183/412 (44%), Gaps = 62/412 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ + +D E L ++ D Y+ L +C + +
Sbjct: 376 VSWTALI-SVFAERDPEQAFLLFCQLHRQSYLPDWYTFSIALKACAYFVTEQHAMAIHSQ 434
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K+G + N L++ +RCG + ++ F + +SW ++ + HG +A
Sbjct: 435 VIKKGFQEDTVLCNALMHAYARCGSLALSEQVFNEMGCHDLVSWNSMLKSYAIHGQAKDA 494
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+LF Q + TF + L A + +GLV E +LF SM + + + P +HYS MV+
Sbjct: 495 LELF---QQMNVCPDSATFVALLSACSHVGLVDEGVKLFNSMSDDHGVVPQLDHYSCMVD 551
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYV 251
GRAG E E I+ + P K +IW +LL S R HG+ +LAK A DK EL+P +
Sbjct: 552 LYGRAGKIFEAEELIRKM-PMKPDSVIWSSLLGSCRKHGETRLAKLAADKFKELEPNNSL 610
Query: 252 G-----------------------------------CWIEIQNKIYEFVSNEELTSEVSD 276
G W+EI +++EF S +
Sbjct: 611 GYVQMSNIYSSGGSFTKAGLIRNEMSDFKVRKEPGLSWVEIGKQVHEFGSGGQYHPNRGA 670
Query: 277 KLAEIE---ENMKELGFV--LNRSLYQTKMK-------------AVALGLI---SFP-HG 314
L+ +E +KE+G+V L+ +LY T+++ A+ ++ S P G
Sbjct: 671 ILSRLEIVIGQLKEMGYVPELSLALYDTEVEHKEDQLFHHSEKMALVFAIMNEGSLPCGG 730
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+++K++ +C H+ + S + ++E+VV+D FH FK CSC D +
Sbjct: 731 NVIKIMKNIRICVDCHNFMKLASYLFQKEIVVRDSNRFHRFKYATCSCNDYW 782
>gi|297851320|ref|XP_002893541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339383|gb|EFH69800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 520
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 127/239 (53%), Gaps = 9/239 (3%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
+ ++ +C VG Q A + K G+ +H +G+ L+++ ++CG IDDA F
Sbjct: 275 TFASVIGACSVLTCHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGIDDARRVFDQM 334
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
EKN SWT +I +G+P EAL+LF + + N TF L A + GLV + Y
Sbjct: 335 QEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFHIEPNYVTFLGVLSACSHSGLVDKGY 394
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
+F SM+ Y ++P EHY+ MV+ +GRAG + EF++ + P + +W LL S
Sbjct: 395 EIFESMQRDYSMKPKMEHYACMVDLMGRAGELNKAFEFVRAM-PERHNSDVWAALLSSCN 453
Query: 228 VHGDMKLAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMK 286
+HG++ LA A +L +L+ G ++ + N + SN++ D +++I E MK
Sbjct: 454 LHGNVDLASIAASELFKLNADKRPGAYLALSNV---YASNDKW-----DNVSKIREVMK 504
>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 922
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 110/404 (27%), Positives = 187/404 (46%), Gaps = 55/404 (13%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ A ++ +L + + G D Y+ ++L + N L+ G + +
Sbjct: 523 WNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFINVLRAIANLEDLDAGRKIHGLVE 582
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K GL + LI + S+CG + DA FK+ EK+ + W +++A + H +AL
Sbjct: 583 KAGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNVQEKDVVCWNAMLAAYNHSDHGQDALK 642
Query: 134 LFKDKQWRYTSMNP--TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LF +Q R +NP T+ S L A A +G + + ++E +E HY+ MV
Sbjct: 643 LF--QQMRLEGVNPDSATYTSVLNACARLGAIEHGKKFHTQLKEAA-METDTRHYACMVA 699
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL------ 245
ALGRA + +E EFI+ + + L+W +LL++ R+H ++ LA+ A++ LL++
Sbjct: 700 ALGRASLLKEAEEFIE-EISSESDALMWESLLVACRIHHNVGLAETAVEHLLDVKAQSSP 758
Query: 246 ---------------------------DPGMYV--GCWIEIQNKIYEFVSNE-ELTSEVS 275
+ G+ C IE+ ++ + F++N V
Sbjct: 759 AVCEQLMNIYAAAGRWEDVSVIKATMREAGLLAPKSCTIEVNSEFHTFMTNHFSPQIGVE 818
Query: 276 DKLAEIEENMKELGFVL------NRSLYQTK-------MKAVALGLISFPHGMPTRVIKS 322
DK+ E+ M + GF+L N S + + + AVA GL P G+ R +
Sbjct: 819 DKIEELVWKMMDKGFLLDPHYAPNDSREKERLFSHCPELLAVAYGLEHTPPGVLVRCVTD 878
Query: 323 VGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ SH +F+S R + V+DP FH+FKDG CSC D +
Sbjct: 879 SPVTDPSHRMLKFISKAYNRGIFVRDPNCFHNFKDGICSCGDYW 922
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 2/146 (1%)
Query: 12 IPWNLLLKA-CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ + + E V +L ++Q + S IL++C PI+L G Q +
Sbjct: 118 VSWNAMISGYALHGRGQEAV-DLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQIHS 176
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
++TK G S V LIN+ +CG ++ A F E+N +SWT +IS V HG E
Sbjct: 177 HITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSKE 236
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKA 156
A LF+ T N +F S L A
Sbjct: 237 AFVLFQKLIRSGTQPNKVSFASILGA 262
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN + C + + ++ ++++ D + +LNSC +P G
Sbjct: 420 VSWNAFIACCCRHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGK 479
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G++S+ V N LI++ RCGK+ DA F ++ SW +I+A V HG A
Sbjct: 480 IDQWGMLSNNLVANALISMYGRCGKLADAREVFYRIRRRDLGSWNAMIAAYVQHGANGSA 539
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
DLF + + TF + L+A A
Sbjct: 540 FDLFIKYKSEGGKGDKYTFINVLRAIA 566
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 1/143 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ ++ D + L +++ + S IL +C NP L G + AY
Sbjct: 219 VSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAY 278
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + GL VGN LI++ +RCG + +A F + N +SW +I A G EA
Sbjct: 279 IKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAMI-AGYGEGFMEEA 337
Query: 132 LDLFKDKQWRYTSMNPTTFRSAL 154
LF+D Q + + T+ S L
Sbjct: 338 FRLFRDMQQKGFQPDRFTYASLL 360
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%)
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
L C+ L G + +M + N LI++ S+CG I+DA+ F+S +K+
Sbjct: 58 LQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIEDANNVFQSMEDKDV 117
Query: 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+SW +IS HG EA+DLF Q N +F S L A
Sbjct: 118 VSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSA 161
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 1/132 (0%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
+L S + WN ++ A E L +Q D ++ +L C + LN
Sbjct: 313 NLRSPNRVSWNAMI-AGYGEGFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNR 371
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G + + + + + V LI++ ++CG +++A F PEKN++SW I+
Sbjct: 372 GKELHSQIVRTAWEADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNAFIACCCR 431
Query: 125 HGHPSEALDLFK 136
HG EA +FK
Sbjct: 432 HGSEKEAFQVFK 443
>gi|326521542|dbj|BAK00347.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 861
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/410 (25%), Positives = 175/410 (42%), Gaps = 58/410 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERI--QLCCGFIDSYSICDILNSCLNPILLNVGTQAQ 69
I W+ LL + + +YE ++ FID + + ++L C + +G Q
Sbjct: 453 IAWSSLLLSSFRDGEYEKAFSTFLQMFRNSDIQFIDEFLLTNVLGVCGALGFMELGKQMH 512
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
K GL+ VGN ++++ +CG++++A F+ P ++ +SW +I+A + H
Sbjct: 513 LLAAKSGLLRACGVGNAIVSMYGKCGQLENAVTFFQRMPHRDLVSWNALITAHLLHRQGD 572
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMG--LVGEAYRLFLSMEEVYHIEPSEEHYS 187
E D + + + + TF + A + LF SM Y+ EP+ EH++
Sbjct: 573 EIWDTWSEMERLVIKPDSVTFLLIISACSCTNSDSADACMELFHSMSSKYNTEPAMEHFA 632
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL-- 245
+V LGR G F+E +FI + P K ++WR+LL + +M L + A++ LL L
Sbjct: 633 AVVNVLGRWGHFDEAEQFIASM-PFKPSAIVWRSLLETCSKQSNMTLRRRAMNHLLALEP 691
Query: 246 -DPGMYV--------------------------------GCWIEIQNKIYEFVSNEELTS 272
DP YV W N I+ F + +
Sbjct: 692 QDPSTYVLASNLYSESAKWHCSENTRLEMREKGIHKIPARSWTFDDNAIHSFFARDRSHP 751
Query: 273 EVSDKLAEIE----ENMK-----ELGFVLNRS---------LYQTKMKAVALGLISFPHG 314
+ D A ++ E MK + FVL+ +Y + A GL+ G
Sbjct: 752 QSKDIYAGLDVLTLECMKAGYEPDTTFVLHDVEEYQKRYFLMYHSAKLAATYGLLMAGSG 811
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
RV+K++ MCG HS S +E+ V+D FH F+ G CSC++
Sbjct: 812 KIIRVVKNIRMCGDCHSFLEHASAATGKEISVRDSNGFHIFRAGICSCRE 861
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN +L ++ YE EL ++ +D +S+ +L + L G A
Sbjct: 209 WNTVLSGLVELGRYEEAFELFGDMRTSDVAVDRFSLSALLAAATEGFCLPHGAAVHALSL 268
Query: 74 KRGLISHPAVGNCLININSRCG-KIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K GL +VGN LI + G ++D F+ P K+ +SWT +++ + G AL
Sbjct: 269 KSGLEVDLSVGNALIGFYAEHGDSVEDMVGVFQRMPVKDVISWTGLLNGYMEFGLVDNAL 328
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAY 157
+F +R N T+ + L +
Sbjct: 329 GVF----YRMPERNFVTYNAVLTGF 349
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTK-RGLISHPAVGNCLININSRCGKIDDADLAFK 105
Y+ +L +C+ +GTQ A K R + V N L+ + +CG+++DA F
Sbjct: 140 YTFVGLLTACIRRGNPRLGTQVHALAAKGRYIGGSLLVANALLGMYVKCGRLEDALRMFH 199
Query: 106 STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
E++ SW ++S V G EA +LF D + +++ + SAL A A G
Sbjct: 200 GMEERDVSSWNTVLSGLVELGRYEEAFELFGDMRTSDVAVDRFSL-SALLAAATEGF 255
>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
Length = 1217
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 190/409 (46%), Gaps = 61/409 (14%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN+++ +K A E V EL ++ D+ SI +L +C + L++G +
Sbjct: 276 VSWNVMIGVYMKNAMPVEAV-ELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHG 334
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ ++ LI + + N LI++ ++CG +D A F++ ++ +SWT +ISA G +
Sbjct: 335 YIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCD 394
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+ LF Q + F + L A + GL+ E F M + Y I P EH + MV
Sbjct: 395 AVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMV 454
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG +E +FI+ + P + +W LL + RVH + + A DKL +L P
Sbjct: 455 DLLGRAGKVKEAYKFIQEM-PMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQS 513
Query: 248 GMYV---------GCWIEIQN----------KIYEFVSNEEL----------------TS 272
G YV G W E+ N K SN E+ ++
Sbjct: 514 GYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSA 573
Query: 273 EVSDKLAEIEENMKELGFVLNR----------------SLYQTKMKAVALGLISFPH--- 313
E+ +L + + MKELG+V + +++ K+ A+ L++
Sbjct: 574 EIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKL-AIVFALMNTEEEDS 632
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
R+ K++ +CG H A + +S I RE++++D FH F+ G CSC
Sbjct: 633 NNAIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 681
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 54/114 (47%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y+ +L +C + +G + TK GL S VGN L+++ +CG + +A L
Sbjct: 140 DHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVL 199
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
++ +SW +++ + +AL++ ++ + S + T S L A +
Sbjct: 200 DEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVS 253
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 174/379 (45%), Gaps = 64/379 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D S+ +L++C L++G AY+ KR + + LIN+ ++CG I+ A F
Sbjct: 192 DEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIF 251
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
K+S +W+ +I HG +AL++F + N TF L A A GLV
Sbjct: 252 DEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVS 311
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ R + SM E+ IEPS EHY MV+ L R G+ +E +F I+P P+IWRTLL+
Sbjct: 312 DGKRYWSSMLEL-GIEPSMEHYGCMVDLLCRGGLIDEAYDFAL-IIPTP-DPVIWRTLLV 368
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMYV----------------------- 251
+ + ++ A+ KLLEL+P +Y
Sbjct: 369 AYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSHVRKMMKENGIKAL 428
Query: 252 -GCW-IEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQ----------- 298
GC IE+ ++ FV+ + E EI++ ++++ + S Y+
Sbjct: 429 PGCTSIEVDGFVHNFVTGDWSHPEAE----EIKKTLRDVALKILISGYKPFVSVVLHLVN 484
Query: 299 -----------TKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVK 347
++ A+A GL+ R++K++ +CG H + +S I +RE++V+
Sbjct: 485 DEEKENVLYEHSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVR 544
Query: 348 DPGSFHHFKDGKCSCKDAY 366
D FH F +G CSCKD +
Sbjct: 545 DRVRFHKFVNGTCSCKDYW 563
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 2/150 (1%)
Query: 14 WNLLLKACIKAK--DYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+N +++ C+ K E +H + + +++++ +L +C + L G Q A
Sbjct: 58 YNSVIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQ 117
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G S P V + L+N S+C +I A F E+N + W+ ++S G +EA
Sbjct: 118 ILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEA 177
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
L +F++ Q + + L A A++G
Sbjct: 178 LIMFREMQVVGIEPDEVSLVGVLSACAMVG 207
>gi|115486035|ref|NP_001068161.1| Os11g0583200 [Oryza sativa Japonica Group]
gi|113645383|dbj|BAF28524.1| Os11g0583200 [Oryza sativa Japonica Group]
Length = 703
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 176/361 (48%), Gaps = 56/361 (15%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
+ + L +C + L++G A + + ++ V + L+++ +CG ++DA+ F
Sbjct: 322 FMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYE 381
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDK-QWRYTSMNPTTFRSALKAYALMGLVGE 165
TP++N ++W +I + G AL +F D + T+ N T + + + + GL +
Sbjct: 382 TPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKD 441
Query: 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS 225
Y LF +M E + IEP EHY+ +V+ LGRAGM E+ E I+G+ P + +W LL +
Sbjct: 442 GYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGM-PMRPSISVWGALLGA 500
Query: 226 SRVHGDMKLAKYALDKLLELDP---GMYV------------------------------- 251
++HG +L + A +KL ELDP G +V
Sbjct: 501 CKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDP 560
Query: 252 GC-WIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNR--SLY-------- 297
GC W+ +N ++ F + + E+ +E+ L+++ + M+ G++ + SLY
Sbjct: 561 GCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLEEEEKE 620
Query: 298 -----QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
++ A+A GLI P G+P R++K++ +C H A +F+S I R + P +
Sbjct: 621 SEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISVEI-RSYQITHPLTA 679
Query: 353 H 353
H
Sbjct: 680 H 680
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 4/154 (2%)
Query: 12 IPWN-LLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ A + + E + E ++ G + S C N+C + L++G Q
Sbjct: 186 VAWNAVMTNAVLDGRPLETI-EAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHG 244
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
++ K G +V N +++ +C A F +NS+SW +++A +G E
Sbjct: 245 FVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEE 304
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
A + R + PT F + GL+G
Sbjct: 305 AFAAYLGA--RRSGEEPTDFMVSSALTTCAGLLG 336
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 105/410 (25%), Positives = 187/410 (45%), Gaps = 56/410 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN L+ Y+ L + + + ++ IL +C + +++G Y
Sbjct: 333 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVY 392
Query: 72 MTKR--GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ KR G+ + ++ LI++ ++CG I+ A F S K+ SW +I HG
Sbjct: 393 IDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRAD 452
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
+ DLF + + TF L A + G++ +F +M + Y + P EHY M
Sbjct: 453 ASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCM 512
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---D 246
++ LG +G+F+E E I + +IW +LL + ++HG+++L + + L+++ +
Sbjct: 513 IDLLGHSGLFKEAEEMINMMEMEP-DGVIWCSLLKACKMHGNVELGESFAENLIKIEPEN 571
Query: 247 PGMYV---------GCW-----------------------IEIQNKIYEFVSNEEL---T 271
PG YV G W IEI + ++EF+ ++
Sbjct: 572 PGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRN 631
Query: 272 SEVSDKLAEIEENMKELGFVLNRSLYQTKMK---------------AVALGLISFPHGMP 316
E+ L E+E +++ GFV + S +M+ A+A GLIS G
Sbjct: 632 REIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTK 691
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +C H A + +S I +RE++ +D FHHF+DG CSC D +
Sbjct: 692 LTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 100/226 (44%), Gaps = 6/226 (2%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
+ DV + WN ++ + +Y+ EL + + D ++ ++++C + +G
Sbjct: 228 VKDV-VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGR 286
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q ++ G S+ + N LI++ S+CG+++ A F+ P K+ +SW +I +
Sbjct: 287 QVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMN 346
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL--VGEAYRLFLSMEEVYHIEPSEE 184
EAL LF++ + N T S L A A +G +G +++ + + + +
Sbjct: 347 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYID-KRLKGVTNASS 405
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
+ +++ + G E + I+ L W ++ +HG
Sbjct: 406 LRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS--WNAMIFGFAMHG 449
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 5/156 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+SY+ +L SC G Q ++ K G V LI++ + G+++DA F
Sbjct: 133 NSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVF 192
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+P ++ +S+T +I + G+ A LF + + + ++ + + YA G
Sbjct: 193 DKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVK----DVVSWNAMISGYAETGNYK 248
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
EA LF M + ++ P E +V A ++G E
Sbjct: 249 EALELFKDMMKT-NVRPDESTMVTVVSACAQSGSIE 283
>gi|224125246|ref|XP_002319538.1| predicted protein [Populus trichocarpa]
gi|222857914|gb|EEE95461.1| predicted protein [Populus trichocarpa]
Length = 577
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 142/289 (49%), Gaps = 39/289 (13%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
IDS + +L L +G Q + + KR S+P VGN LIN+ S+CG ++D+
Sbjct: 259 IDSNMVSAVLGVFGADTSLGLGQQIHSLVIKRSFGSNPFVGNGLINMYSKCGDLEDSTKV 318
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F P NS+SW +I+A HG S AL L+K+ + + TF S L A + +GLV
Sbjct: 319 FSRMPCMNSVSWNSMIAAFARHGDGSRALQLYKEMRLKGVEPTDVTFLSLLHACSHVGLV 378
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ SM EV+ + P EHY+ +V+ LGRAG+ E FI+G+ P K L+W+ LL
Sbjct: 379 EKGMEFLKSMTEVHKLTPRMEHYACVVDMLGRAGLLNEAKTFIEGL-PIKPDVLVWQALL 437
Query: 224 LSSRVHGDMKLAKYALDKLLELDP----------GMYVG--------------------- 252
+ +HGD ++ KYA + L+ P +Y
Sbjct: 438 GACGIHGDPEMGKYAAEHLILSAPEKPSPYILLANIYSSKGRWKERAKTIKRMKEMCVAK 497
Query: 253 ----CWIEIQNKIYEFVSNEELTSE---VSDKLAEIEENMKELGFVLNR 294
WIEI+N ++ FV +++ + + LAE+ +M + G+V ++
Sbjct: 498 ETGISWIEIENNLHSFVVEDKMHPQAEIIYGVLAELFGHMIDEGYVPDK 546
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 3/147 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF--IDSYSICDILNSCLNPILLNVGTQAQ 69
+ WN+++ +K +++ +++Q GF +D ++ IL++C P L V
Sbjct: 24 VSWNIMISGFLKDGSFDVGFGFFKQMQ-SLGFYRLDQATLTTILSACDRPELGFVNKMVH 82
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
G +VGN LI +CG F E+N ++WT IIS V
Sbjct: 83 CLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEMLERNVITWTAIISGLVQSELYR 142
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKA 156
++L LF + N T+ S+L A
Sbjct: 143 DSLRLFVEMTNGLVEPNSLTYLSSLMA 169
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDI--LNSCLNPILLNVGTQAQ 69
I W ++ ++++ Y L +++ G ++ S+ + L +C L G Q
Sbjct: 126 ITWTAIISGLVQSELYRDSLRLF--VEMTNGLVEPNSLTYLSSLMACSGLQALREGCQIH 183
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ K GL S V + L+++ S+CG + D F+S + + +S T I++ +G
Sbjct: 184 GRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQNGFEE 243
Query: 130 EALDLF 135
EA+ F
Sbjct: 244 EAMQFF 249
>gi|414879943|tpg|DAA57074.1| TPA: hypothetical protein ZEAMMB73_804341 [Zea mays]
Length = 1056
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 111/413 (26%), Positives = 178/413 (43%), Gaps = 61/413 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF---IDSYSICDILNSCLNPILLNVGTQA 68
+ WN +L A + +L R++ G D+ +I +L+S + VG A
Sbjct: 643 VSWNAVLSAHAQNGLAVDALDLYRRMRSPEGSGVEPDAVTIVGVLSSAAHLGARGVGFDA 702
Query: 69 QAYMTKR--GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ Y+ +R G ++ + N LIN ++RCG + A F P K+ +SWT +I+ HG
Sbjct: 703 EHYVVQRLPGFRTNVQLCNALINFHARCGSLPRAQQLFDEMPAKSIVSWTALITGHGMHG 762
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186
+ A+ LF+ + L A + GL E F +ME VY + P+ EHY
Sbjct: 763 NGGVAVSLFERMVSEGIHPDNVAMVGVLSACSHAGLYDEGRMYFSTMESVYKLRPTLEHY 822
Query: 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+ +V+ LGRAG EE E I + P +W LL + ++H ++++ + A +++EL+
Sbjct: 823 TCIVDLLGRAGRLEEARELISSM-PMPADGAVWGALLGACKIHKNVEIGEEAFARVVELE 881
Query: 247 P---GMYV-------------------------------GCWIEIQN------------- 259
P G YV GC N
Sbjct: 882 PRNVGYYVLMSNIYTDTGQLDCVARVRAVMRKRGLKKEPGCSYVEHNGRVHLFMADDHSH 941
Query: 260 ----KIYEFVSNEEL----TSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISF 311
+IYE V+ EL S V + + + + E + ++ AVA GL++
Sbjct: 942 PQARRIYELVTRLELMVKEKSGVRESVVAVPKGRMEKEAAQPLVGFHSEKLAVAFGLLNT 1001
Query: 312 PHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
G VIK++ +CG HS + +S R +V+D FH F G CSCKD
Sbjct: 1002 EAGSEIVVIKNLRVCGDCHSFLKAVSATTNRSFLVRDASRFHRFDGGVCSCKD 1054
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
+N L+ C + L R++ D+ ++ ++ + L+V Q A
Sbjct: 544 FNSLISGCARHSLPVACFALFRRMRAIAVRFDAVTLLALVPAAP----LSVVPQVHALAA 599
Query: 74 KRGLISHPAVGNCLININSRCGKIDDA--DLAFKSTP--EKNSLSWTFIISARVNHGHPS 129
+ GL + +V NCL++ +R G A F P ++ +SW ++SA +G
Sbjct: 600 QVGLATETSVANCLMSTYARGGAFGAALARRVFDEMPLASRDLVSWNAVLSAHAQNGLAV 659
Query: 130 EALDLFK 136
+ALDL++
Sbjct: 660 DALDLYR 666
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 105/417 (25%), Positives = 183/417 (43%), Gaps = 70/417 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ Y+ L + + + ++ IL +C ++ G Y
Sbjct: 302 ISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVY 361
Query: 72 MTKR--GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ KR G+ + ++ LI++ ++CG I+ A F S + + +I HG +
Sbjct: 362 IDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRAN 421
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
A D+F + + TF L A + G++ R+F SM + Y I P EHY M
Sbjct: 422 AAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCM 481
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLEL-- 245
++ LG G+F+E E I + + P +IW +LL + ++HG+++L + KL+++
Sbjct: 482 IDLLGHLGLFKEAEEMINTMT---MEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEP 538
Query: 246 -DPGMYV---------GCW-----------------------IEIQNKIYEFV------- 265
+PG YV G W IEI + ++EF+
Sbjct: 539 ENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHP 598
Query: 266 SNEEL----------------TSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLI 309
N E+ + S+ L E+EE K+ + ++ A+A GLI
Sbjct: 599 RNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEFKQGAL-----RHHSEKLAIAFGLI 653
Query: 310 SFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
S G ++K++ +C H A + +S I +RE++ +D FHHF+DG CSC D +
Sbjct: 654 STKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 74/157 (47%), Gaps = 1/157 (0%)
Query: 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT 66
+ DV + WN ++ + + +L + + D ++ ++++C + +G
Sbjct: 197 VKDV-VSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGR 255
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q +++ GL S+ + N LI++ S+CG+++ A F+ K+ +SW +I +
Sbjct: 256 QVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLN 315
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
EAL LF++ + N T S L A A +G +
Sbjct: 316 LYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAI 352
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 5/156 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+SY+ +L SC + G Q ++ K G V LI++ + G+ DA F
Sbjct: 102 NSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVF 161
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ ++ +S+T +I+ + G+ A +F + + + ++ + + YA G
Sbjct: 162 DGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVK----DVVSWNAIISGYADTGNNK 217
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
EA LF M + +++P E +V A ++G +
Sbjct: 218 EALDLFKEMMKT-NVKPDESTMVTVVSACAQSGSIQ 252
>gi|357146631|ref|XP_003574060.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Brachypodium distachyon]
Length = 735
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 109/408 (26%), Positives = 179/408 (43%), Gaps = 56/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN LL A + E+ +L + + ++ +L S + L G + Y
Sbjct: 331 VTWNSLLAAYKHNRKPEVALKLFYEMLKSDLLPNLVTMHIVLLSSGMTMALRYGRELHGY 390
Query: 72 MTKRGLISHP-AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ K +P + LI++ +CGKIDDA L F+ T EK+ W ++S + H P +
Sbjct: 391 INKNWFGGYPDTLATALIDMYGKCGKIDDARLVFECTVEKDIAVWNAMMSCYLLHRMPRD 450
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
LFK + + TF L A G + EA SME++Y I+P+ +HY+ MV
Sbjct: 451 VKRLFKYIEHSRIQPDHVTFVILLSACKQEGSMEEARSYLYSMEDLYCIKPTLKHYTCMV 510
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMY 250
+ +G AG+ EE LE I+ + P + +W T+L + ++H ++++A A L EL+P
Sbjct: 511 DIMGTAGLLEESLELIQKM-PLEPDACLWSTVLKACKLHSNLEVADKAAKALFELEPN-N 568
Query: 251 VGCWIEIQNKIYEFVSNEELTSEVSDKLAE------------------------------ 280
++ + N IY + T V D + E
Sbjct: 569 TSNYMALSN-IYANNGLWDFTDSVRDAMTEQGLHVERQCSLLYLGTNVDSFEAGVMSHPA 627
Query: 281 ----------IEENMKELGF------------VLNRSLYQTKMKAVALGLISFPHGMPTR 318
+ M++ G+ V S + T+ AV GLIS P R
Sbjct: 628 FENILNAWKDVASRMEQSGYAPQDNEPYCNVEVDPLSCHHTERIAVCYGLISMCAHEPIR 687
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V K+ MC HS+ +F+S R++ + D ++HHF +G CSC D +
Sbjct: 688 VSKNFRMCKECHSSMKFISRDKNRQIFISDGCTYHHFSNGSCSCGDMW 735
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 87/196 (44%), Gaps = 6/196 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCG--FIDSYSICDILNSCLNPILLNVGTQAQAY 71
WN ++ C++ Y+ E L Q C D+ ++ IL +C + L +G Q +Y
Sbjct: 48 WNCIISGCVQNSRYD---EALGIFQEMCETEMPDAVTVASILPACTGLMALGIGKQLHSY 104
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G+ + +G+ LI + S C + A F + E+N W +I + +N G +A
Sbjct: 105 VVRCGIKLNVYIGSSLIGMYSECRQFAYARSVFSAIDERNVTVWNELIQSYINDGRMDKA 164
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F Q + T+ S + YA G AY L M + ++P+ + ++
Sbjct: 165 WEAFNLMQEDGLEPDIVTYNSFISGYARTGQKELAYELLSGMAN-FSLKPTVISMNALIS 223
Query: 192 ALGRAGMFEEVLEFIK 207
L G+ + LE +
Sbjct: 224 GLHHYGLCADALEAFR 239
>gi|115482524|ref|NP_001064855.1| Os10g0477200 [Oryza sativa Japonica Group]
gi|110289259|gb|AAP54276.2| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|110289260|gb|ABG66139.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|113639464|dbj|BAF26769.1| Os10g0477200 [Oryza sativa Japonica Group]
gi|215695099|dbj|BAG90290.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 699
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 169/358 (47%), Gaps = 56/358 (15%)
Query: 62 LNVGTQAQAYMTKRGLISHP-AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L G + Y+ K +P A+ + LI++ +CGKI+DA L F+ T EK+ +W I+S
Sbjct: 345 LQHGRELHGYIRKNWPDGYPTALASALIDMYGKCGKIEDARLVFECTDEKDIATWNAIMS 404
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
A + H P E LFK + +P TF L A G + EA R F SME+VY I+
Sbjct: 405 AYLLHRIPGEVKKLFKYIEQSGIQPDPVTFIILLSACKQEGSMEEARRYFYSMEDVYGIQ 464
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYA 238
P+ +HY+ MV+ +G AG+ EE LE I+ + +L P +W LL + ++H ++++ + A
Sbjct: 465 PTLKHYTCMVDIMGMAGLLEESLELIQKM---QLEPDGCLWSILLKACKLHSNLEIGEKA 521
Query: 239 LDKLLEL----------------DPGMY------------VGCWIEIQ-------NKIYE 263
L EL D G++ G +E Q ++
Sbjct: 522 AKALFELEPNNTSNYMSLSNIYADNGLWESTEALRVAMTEQGLNVERQCSRLYLGTDVHT 581
Query: 264 FVSNEELTSEVSDKLA---EIEENMKELGFVLNR------------SLYQTKMKAVALGL 308
F + + L+ ++ + M++ G+ S T+ A+ GL
Sbjct: 582 FEAGDSSHPAFEKILSTWNDLSDRMEQSGYPPQDIEPYSNAEADPLSCQHTERIALCYGL 641
Query: 309 ISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
IS R+ K+ MC HS+ +F+S + RE+ V D ++HHF++G CSC D +
Sbjct: 642 ISVRVHDLIRISKNFRMCMECHSSIKFISRDMNREIFVSDGCTYHHFQNGACSCGDMW 699
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 93/199 (46%), Gaps = 12/199 (6%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI-----DSYSICDILNSCLNPILLNVGTQA 68
WN ++ C++ Y+ E + + C D+ ++ IL +C + L +G Q
Sbjct: 13 WNCIISGCVQNARYD------EALNIFCEMCESESPDAVTVASILPACTGLMALGIGKQL 66
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
+Y+ + G+ + +G+ LI + S CG+ A F + EKN+ W +I + +N
Sbjct: 67 HSYVIRCGIKLNVYIGSSLIGMYSECGEFGYARSVFAAIEEKNATVWNELIRSYINEERM 126
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
+EA + F+ + + T+ S + AYA G +AY L +M E+ ++P+ +
Sbjct: 127 NEAWEAFRLMKENGLQPDTITYNSFIAAYARAGQKEQAYTLLSNMVEI-GLKPNVVSMNA 185
Query: 189 MVEALGRAGMFEEVLEFIK 207
++ L G + LE +
Sbjct: 186 LISGLHHHGRHADALEAFR 204
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
+I +L+ + L +G + Y + GLIS+ V + L+++ + G + AD F+
Sbjct: 230 TITSVLSLLTDLRLDRLGKEVHCYAFRSGLISNIFVSSKLVDLYGKTGDVGTADKVFRRI 289
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKD 137
KN ++W I+++ + P AL LF +
Sbjct: 290 SNKNVVTWNSILASYRQNRKPEIALKLFHE 319
>gi|2244928|emb|CAB10350.1| hypothetical protein [Arabidopsis thaliana]
gi|7268320|emb|CAB78614.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 104/404 (25%), Positives = 183/404 (45%), Gaps = 50/404 (12%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQ--LCCGFIDSYSICDILNSCLNPILLNVGTQA 68
+ W ++ A + A+ +E + EL L + + + ++++C + L G A
Sbjct: 200 VSWTSMITAYAQNARGHEAI-ELFRSFNAALTSDRANQFMLASVISACSSLGRLQWGKVA 258
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
+T+ G S+ V L+++ ++CG + A+ F + +S+T +I A+ HG
Sbjct: 259 HGLVTRGGYESNTVVATSLLDMYAKCGSLSCAEKIFLRIRCHSVISYTSMIMAKAKHGLG 318
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
A+ LF + + N T L A + GLV E M E Y + P HY+
Sbjct: 319 EAAVKLFDEMVAGRINPNYVTLLGVLHACSHSGLVNEGLEYLSLMAEKYGVVPDSRHYTC 378
Query: 189 MVEALGRAGMFEEVLEFIKGI-VPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
+V+ LGR G +E E K I V + L+W LL + R+HG +++ A +L++ +
Sbjct: 379 VVDMLGRFGRVDEAYELAKTIEVGAEQGALLWGALLSAGRLHGRVEIVSEASKRLIQSNQ 438
Query: 248 GM---------------------YVGCWIEIQNKIYEFVSNE---ELTSEVSDKLAEIEE 283
+ WIE ++ +Y F + + + + E+ L ++E+
Sbjct: 439 QVTRWEDSESLRLEMKRSGNVKERACSWIENKDSVYVFHAGDLSCDESGEIERFLKDLEK 498
Query: 284 NMKELG--------------FVLNRSLYQTKMK-------AVALGLISFPHGMPTRVIKS 322
MKE G FV + +M A+A GL+ P G R++ +
Sbjct: 499 RMKERGHRGSSSMITTSSSVFVDVDEEAKDEMVSLHCERLALAYGLLHLPAGSTIRIMNN 558
Query: 323 VGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ MC H A + +S I+ERE+VV+D FH FK+G C+C+D +
Sbjct: 559 LRMCRDCHEAFKLISEIVEREIVVRDVNRFHCFKNGSCTCRDYW 602
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ Y+ + +C +G A + GL + V + L+++ +C ++ A F
Sbjct: 130 NEYTFASVFKACSALAESRIGKNIHARLEISGLRRNIVVSSSLVDMYGKCNDVETARRVF 189
Query: 105 KSTPE--KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
S +N +SWT +I+A + EA++LF+ TS F
Sbjct: 190 DSMIGYGRNVVSWTSMITAYAQNARGHEAIELFRSFNAALTSDRANQF 237
>gi|387169524|gb|AFJ66185.1| hypothetical protein 11M19.3 [Arabidopsis halleri]
Length = 511
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 102/409 (24%), Positives = 180/409 (44%), Gaps = 58/409 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFID----SYSICDILNSCLNPILLNVGTQ 67
I WNL++ ++ YE E L+ ++ F D +S L +C L+
Sbjct: 107 ITWNLMIGGYVRNVQYE---EALKTLKNMLSFSDIKPNKFSFASSLAACARLGDLHHAKW 163
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
+ M G+ + + + L+++ ++CG I+ + F S + W +I+ HG
Sbjct: 164 VHSLMIDAGIELNAILSSALVDVYAKCGDIETSREVFYSVKRNDVSIWNAMITGFATHGL 223
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
+EA+ +F + + + S + TF L A + GL+G+ F M + + I+P EHY
Sbjct: 224 ATEAIRVFSEMEAEHVSPDSITFLGLLTACSHCGLLGKGKVYFDIMSQRFSIQPKLEHYG 283
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
MV+ LGRAG +E E I+ + P + +IWR+LL SSR + + +L + A+ L +
Sbjct: 284 AMVDLLGRAGRVKEAYELIESM-PIEPDVVIWRSLLSSSRTYKNPELGEIAIQNLSKAKS 342
Query: 248 GMYV--------------------------------GCWIEIQNKIYEFVSNEELTSEVS 275
G YV W+E I+ F + + E+
Sbjct: 343 GDYVLLSNIYSTTKKWESAQKVRELMTKEGIRKAKGKSWVEYGGVIHRFKAGDTSHIEIK 402
Query: 276 DKLAEIE---ENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPT 317
+E + K GFV + L Y ++ A+A ++ G
Sbjct: 403 AIYKVLEGLIQKTKSEGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSPGTEI 462
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+ K++ MC H+ + +S ++ R ++++D FH F+DG CSCKD +
Sbjct: 463 RIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSCKDYW 511
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 151/318 (47%), Gaps = 39/318 (12%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ ++A + E+ +Q D +++ ++ +C L G A+ Y
Sbjct: 221 VSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIY 280
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M++ G+ VGN L+++ S+CG I A FK ++ +WT +I +GH EA
Sbjct: 281 MSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEA 340
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+++F + + + TF L A GLV + FLSM Y I P+ H+ +++
Sbjct: 341 INMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLID 400
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--GM 249
LGRAG +E LE I G +P + IW TLL + RVHG+ ++ + A + LLELD GM
Sbjct: 401 LLGRAGKLKEALETI-GNMPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGM 459
Query: 250 -YV-------------------------------GC-WIEIQNKIYEFVSNEE---LTSE 273
Y+ GC IE+ I+EF++ + ++ E
Sbjct: 460 VYILLSNLYAKSNRWEDVRRLRQVIMEKGIKKEPGCSLIEMNGTIHEFIAGDRSHPMSKE 519
Query: 274 VSDKLAEIEENMKELGFV 291
+ KL ++ ++K+ G+V
Sbjct: 520 IYSKLDKVLTDLKDAGYV 537
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 84/207 (40%), Gaps = 51/207 (24%)
Query: 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFID---------SYSICDILNSCLN 58
D + WN L+ +++ + + CC F+D + +L++C
Sbjct: 85 GDTPVVWNALISGHRRSRQFRLS---------CCSFVDMVRTGVVPTPVTYITVLSACGK 135
Query: 59 PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC------------------------ 94
+ +G Q + G++ VGN LI++ + C
Sbjct: 136 DKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSV 195
Query: 95 -------GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP 147
G++D A F PE++++SWT +I V G EAL++F++ Q+ +
Sbjct: 196 ISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADE 255
Query: 148 TTFRSALKAYALMGLV--GEAYRLFLS 172
T S + A A +G + GE R+++S
Sbjct: 256 FTMVSVVTACAQLGALETGEWARIYMS 282
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 121/241 (50%), Gaps = 4/241 (1%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W ++ + Y E R+Q+ D S+ +L C L +G Y
Sbjct: 217 WTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYAD 276
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G + + V N LI + ++CG ID F E++ +SW+ +I NHG EA++
Sbjct: 277 KAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIE 336
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF++ Q + TF L A A GL+ E R F SM+ Y+IEP EHY +V L
Sbjct: 337 LFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLL 396
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMY 250
G +G ++ LE +K + P K IW +LL S R HG++K+A A++ LLEL+P G Y
Sbjct: 397 GLSGRLDQALELVKKM-PRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNY 455
Query: 251 V 251
V
Sbjct: 456 V 456
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 9/143 (6%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F D ++ ++ SC + ++G Q ++ K G S+ V N L+ + +C +DDA
Sbjct: 114 FPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHR 173
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR--SALKAYALM 160
F+ E++++SW +IS V G A +F++ Q + T F + + YA +
Sbjct: 174 VFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQ------DKTIFSWTAIVSGYARI 227
Query: 161 GLVGEAYRLFLSMEEVYHIEPSE 183
G +A F M+ V IEP E
Sbjct: 228 GCYADALEFFRRMQMV-GIEPDE 249
>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 803
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 109/414 (26%), Positives = 182/414 (43%), Gaps = 62/414 (14%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
I WN ++ A ++ K+Y + EL +++ DS +I IL + + L+ G Q A
Sbjct: 393 ISWNSIIAAYVQNGKNYSAL-ELFQKLWDSSLLPDSTTIASILPAYAESLSLSEGRQIHA 451
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ K S+ + N L+++ + CG ++DA F K+ +SW II A HG
Sbjct: 452 YIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLKDVVSWNSIIMAYAVHGFGRI 511
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
++ LF + N +TF S L A ++ G+V E + F SM+ Y I+P EHY M+
Sbjct: 512 SVCLFSEMIASKVDPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGYML 571
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMY 250
+ +GR G F FI+ + P IW +LL +SR H D+ +A++A +++ +++
Sbjct: 572 DLIGRTGNFSSAKRFIREM-PFLPTARIWGSLLNASRNHNDITVAEFAAEQIFKMEHDN- 629
Query: 251 VGCW------------------------------------IEIQNKIYEFVSNE------ 268
GC+ +E ++K + + +
Sbjct: 630 TGCYVLLLNMYAEARRWEDVNRIKLLMESKGISRTSSRSTVEAKSKTHVLTNGDRSHVET 689
Query: 269 ----ELTSEVSDKLAEIEENMKELGFV-------LNRSLYQTKMK-----AVALGLISFP 312
E+ VS + E EE + +V L +S + + A GLIS
Sbjct: 690 NKIYEVLDIVSRMIGEEEEEDSYVHYVSKLRRETLAKSRSNSPRRHSVRLATCFGLISTE 749
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G V + +C H S + RE+VV D FHHF +G+CSC + +
Sbjct: 750 TGRTVTVRNNTRICRKCHEFLEKASKMTRREIVVGDSKIFHHFSNGRCSCGNYW 803
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Y +RG + H + LI++ G++ A++ F EKN +SW II+A V
Sbjct: 345 GRTIHGYAMRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNLISWNSIIAAYVQ 404
Query: 125 HGHPSEALDLFKDKQWRYTSM-NPTTFRSALKAYA 158
+G AL+LF+ K W + + + TT S L AYA
Sbjct: 405 NGKNYSALELFQ-KLWDSSLLPDSTTIASILPAYA 438
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI------DSYSICDILNSCLNPILLNVGTQ 67
WN+++K Y E +QL C + DS++ ++ S L G +
Sbjct: 94 WNVMIKGFTSCGLY------FEALQLYCRMVFSGVKADSFTYPFVIKSVTGISSLEEGKK 147
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
A + K +S V N LI++ + G DA+ F+ PE++ +SW +IS +
Sbjct: 148 IHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPERDIVSWNSMISGYLALED 207
Query: 128 PSEALDLFKD 137
+L LFK+
Sbjct: 208 GFRSLMLFKE 217
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 121/241 (50%), Gaps = 4/241 (1%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W ++ + Y E R+Q+ D S+ +L C L +G Y
Sbjct: 233 WTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYAD 292
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G + + V N LI + ++CG ID F E++ +SW+ +I NHG EA++
Sbjct: 293 KAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIE 352
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF++ Q + TF L A A GL+ E R F SM+ Y+IEP EHY +V L
Sbjct: 353 LFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLL 412
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMY 250
G +G ++ LE +K + P K IW +LL S R HG++K+A A++ LLEL+P G Y
Sbjct: 413 GLSGRLDQALELVKKM-PRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNY 471
Query: 251 V 251
V
Sbjct: 472 V 472
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 108/258 (41%), Gaps = 48/258 (18%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F D ++ ++ SC + ++G Q ++ K G S+ V N L+ + +C +DDA
Sbjct: 159 FPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHR 218
Query: 103 AFKSTPEKNS--LSWTFIISARVNHGHPSEALDLFKDKQ--------------------- 139
F+ E+++ SWT I+S G ++AL+ F+ Q
Sbjct: 219 VFEEMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQL 278
Query: 140 -------WRYTSMNPTTF-------RSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
W + + F + ++ YA G + + RLF M+E I
Sbjct: 279 GALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVIS----- 333
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCP-LIWRTLLLSSRVHGDM--KLAKY--ALD 240
+S M+ L G E +E + + K+ P +I LL++ H + + +Y ++
Sbjct: 334 WSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMK 393
Query: 241 KLLELDPGM-YVGCWIEI 257
+ ++PG+ + GC + +
Sbjct: 394 RDYNIEPGVEHYGCLVNL 411
>gi|15239085|ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570
gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana]
gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 114/429 (26%), Positives = 190/429 (44%), Gaps = 71/429 (16%)
Query: 4 CSLISD-------VEIP----WNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSIC 50
CSL+ D +E P W L+ ++ EM L+E ++ I +S+++
Sbjct: 315 CSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMA--LIEFRKMMRDSIKPNSFTLS 372
Query: 51 DILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK 110
L C N + G Q +TK G G+ LI++ +CG D A L F + E
Sbjct: 373 SALRGCSNLAMFEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEV 432
Query: 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF 170
+ +S +I + +G EALDLF+ N T S L A LV E LF
Sbjct: 433 DVISLNTMIYSYAQNGFGREALDLFERMINLGLQPNDVTVLSVLLACNNSRLVEEGCELF 492
Query: 171 LSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230
S + I + +HY+ MV+ LGRAG EE ++ L ++WRTLL + +VH
Sbjct: 493 DSFRK-DKIMLTNDHYACMVDLLGRAGRLEEAEMLTTEVINPDL--VLWRTLLSACKVHR 549
Query: 231 DMKLAKYALDKLLELDPG----------MYVGC-------------------------WI 255
+++A+ K+LE++PG +Y W+
Sbjct: 550 KVEMAERITRKILEIEPGDEGTLILMSNLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWV 609
Query: 256 EIQNKIYEFVSNEEL----TSEVSDKLAEIEENMKELGFVLN--------------RSLY 297
EI + + F++ + + ++ + L E+ + K+LG+V + RSL+
Sbjct: 610 EINKETHTFMAGDLFSHPNSEQILENLEELIKKSKDLGYVEDKSCVFQDMEETAKERSLH 669
Query: 298 QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKD 357
Q K + G R++K++ +C HS + +S +++RE++ +D FHHF+D
Sbjct: 670 QHSEKLAIAFAVWRNVGGSIRILKNLRVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRD 729
Query: 358 GKCSCKDAY 366
G CSC D +
Sbjct: 730 GSCSCGDYW 738
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 9/165 (5%)
Query: 9 DVEIPWNLLLKACIKAKDYEMVHE----LLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
DV + L++ K +D E V L+E++Q + Y+ +L SC N +
Sbjct: 231 DVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQ-----PNEYTYASVLISCGNLKDIGN 285
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G M K G S A L+ + RC +DD+ FK N +SWT +IS V
Sbjct: 286 GKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQ 345
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
+G AL F+ N T SAL+ + + + E ++
Sbjct: 346 NGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQI 390
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 1/129 (0%)
Query: 40 CCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDD 99
C +++ +L C++ ++ QA+M K G + + G+ L++ + +CG ID
Sbjct: 59 CDTLTTTHNFSQLLRQCIDERSISGIKTIQAHMLKSGFPAEIS-GSKLVDASLKCGDIDY 117
Query: 100 ADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159
A F E++ ++W +I+ + H EA+++++ + T S KA++
Sbjct: 118 ARQVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSD 177
Query: 160 MGLVGEAYR 168
+ L EA R
Sbjct: 178 LSLEKEAQR 186
>gi|125575136|gb|EAZ16420.1| hypothetical protein OsJ_31889 [Oryza sativa Japonica Group]
Length = 664
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 169/358 (47%), Gaps = 56/358 (15%)
Query: 62 LNVGTQAQAYMTKRGLISHP-AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L G + Y+ K +P A+ + LI++ +CGKI+DA L F+ T EK+ +W I+S
Sbjct: 310 LQHGRELHGYIRKNWPDGYPTALASALIDMYGKCGKIEDARLVFECTDEKDIATWNAIMS 369
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
A + H P E LFK + +P TF L A G + EA R F SME+VY I+
Sbjct: 370 AYLLHRIPGEVKKLFKYIEQSGIQPDPVTFIILLSACKQEGSMEEARRYFYSMEDVYGIQ 429
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYA 238
P+ +HY+ MV+ +G AG+ EE LE I+ + +L P +W LL + ++H ++++ + A
Sbjct: 430 PTLKHYTCMVDIMGMAGLLEESLELIQKM---QLEPDGCLWSILLKACKLHSNLEIGEKA 486
Query: 239 LDKLLEL----------------DPGMY------------VGCWIEIQ-------NKIYE 263
L EL D G++ G +E Q ++
Sbjct: 487 AKALFELEPNNTSNYMSLSNIYADNGLWESTEALRVAMTEQGLNVERQCSRLYLGTDVHT 546
Query: 264 FVSNEELTSEVSDKLA---EIEENMKELGFVLNR------------SLYQTKMKAVALGL 308
F + + L+ ++ + M++ G+ S T+ A+ GL
Sbjct: 547 FEAGDSSHPAFEKILSTWNDLSDRMEQSGYPPQDIEPYSNAEADPLSCQHTERIALCYGL 606
Query: 309 ISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
IS R+ K+ MC HS+ +F+S + RE+ V D ++HHF++G CSC D +
Sbjct: 607 ISVRVHDLIRISKNFRMCMECHSSIKFISRDMNREIFVSDGCTYHHFQNGACSCGDMW 664
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 1/163 (0%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+ ++ IL +C + L +G Q +Y+ + G+ + +G+ LI + S CG+ A F
Sbjct: 8 DAVTVASILPACTGLMALGIGKQLHSYVIRCGIKLNVYIGSSLIGMYSECGEFGYARSVF 67
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ EKN+ W +I + +N +EA + F+ + + T+ S + AYA G
Sbjct: 68 AAIEEKNATVWNELIRSYINEERMNEAWEAFRLMKENGLQPDTITYNSFIAAYARAGQKE 127
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK 207
+AY L +M E+ ++P+ + ++ L G + LE +
Sbjct: 128 QAYTLLSNMVEI-GLKPNVVSMNALISGLHHHGRHADALEAFR 169
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
+I +L+ + L +G + Y + GLIS+ V + L+++ + G + AD F+
Sbjct: 195 TITSVLSLLTDLRLDRLGKEVHCYAFRSGLISNIFVSSKLVDLYGKTGDVGTADKVFRRI 254
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKD 137
KN ++W I+++ + P AL LF +
Sbjct: 255 SNKNVVTWNSILASYRQNRKPEIALKLFHE 284
>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
Length = 1229
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 114/413 (27%), Positives = 189/413 (45%), Gaps = 67/413 (16%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN+++ +K A E V EL R++ D+ SI +L +C + L++G +
Sbjct: 275 VSWNVMIGVYMKNAMPVEAV-ELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHG 333
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ ++ LI + + N LI++ ++CG ++ A F++ ++ +SWT +ISA G +
Sbjct: 334 YIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCD 393
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+ LF Q + F + L A + GL+ E F M + Y I P EH + MV
Sbjct: 394 AVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMV 453
Query: 191 EALGRAGMFEEVLEFIKGIV--PGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP- 247
+ LGRAG +E FI+ + P + +W LL + RVH D + A DKL +L P
Sbjct: 454 DLLGRAGKVKEAYRFIQDMSMEPNE---RVWGALLGACRVHSDTDIGLLAADKLFQLAPE 510
Query: 248 --GMYV---------GCWIEIQN----------KIYEFVSNEEL---------------- 270
G YV G W E+ N K SN E+
Sbjct: 511 QSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQ 570
Query: 271 TSEVSDKLAEIEENMKELGFVLNR----------------SLYQTKMKAVALGLISFPH- 313
+ E+ +L + + MKELG+V + +++ K+ A+ L++
Sbjct: 571 SDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKL-AIVFALMNTKEE 629
Query: 314 ----GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
R+ K++ +CG H A + +S I RE++++D FH F+ G CSC
Sbjct: 630 EEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 682
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y+ +L +C + +G + TK GL S VGN L+++ +CG + +A L
Sbjct: 139 DHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVL 198
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
++ +SW ++ + +AL++ ++ + S + T S L A +
Sbjct: 199 DEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVS 252
>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
Length = 625
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 103/413 (24%), Positives = 188/413 (45%), Gaps = 61/413 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQA 70
+ W+ ++ ACI+A ++ + +++ + GF D+ + +L +C + L G
Sbjct: 216 VSWSAMIDACIRAGEFSEALRMFDQM-MGNGFRPDAVVLSSVLKACAHLGALERGRWVHR 274
Query: 71 YMTKRGLISHP---AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
++ GL P + L+++ +CG +D+A F ++ + W +I +GH
Sbjct: 275 FLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGH 334
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
AL+LF+ N +TF L A G V E +F SM + + IEP EHY
Sbjct: 335 GKRALELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEGKEIFRSMCD-HGIEPRREHYG 393
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
+ + LGRAG+ EE E + +P + W L+ S +H ++ + + KL+EL+P
Sbjct: 394 CLADLLGRAGLLEEA-EAVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLIELEP 452
Query: 248 ---GMYV---------GCW-----------------------IEIQNKIYEFVSNEEL-- 270
G YV G W IE ++EF S +
Sbjct: 453 DDGGRYVVLFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVHEFRSGDTRHP 512
Query: 271 -TSEVSDKLAEIEENMKELGFVLNRSL----------------YQTKMKAVALGLISFPH 313
T ++ L ++E+ ++ +G+V + S Y ++ A+A G+++ P
Sbjct: 513 QTRQIYALLEDMEQRLQLIGYVKDTSQVLMDMDDEEDKGNTLSYHSERLALAFGILNTPR 572
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
MP R++K++ +C H + +S + +RE++++D FH F+ G CSC D +
Sbjct: 573 HMPIRIVKNLRVCRDCHVYAKLVSKLYQREIIMRDRHRFHLFRGGVCSCNDFW 625
Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 79/213 (37%), Gaps = 37/213 (17%)
Query: 68 AQAYMTKRGLISHPAVGNCLININ---------------------------------SRC 94
A K G ++HP V NCL+ + +C
Sbjct: 138 AHGQALKHGALAHPVVTNCLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGKC 197
Query: 95 GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
G ++ A F PE+ +SW+ +I A + G SEAL +F + S L
Sbjct: 198 GDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSVL 257
Query: 155 KAYALMGLV--GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPG 212
KA A +G + G FL E + + + +V+ + G +E G+
Sbjct: 258 KACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQSQ 317
Query: 213 KLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
+ ++W ++ ++G K A ++L++
Sbjct: 318 DV--VLWNAMIGGLAMNGHGKRALELFRRMLDM 348
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 149/309 (48%), Gaps = 36/309 (11%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ ++ + +E + E + + ++ +L++C + L+ G + Y
Sbjct: 272 VTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCY 331
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + + VG LI+ ++CG +++A L F+ EKN +WT +I+ HG+ A
Sbjct: 332 VIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGA 391
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+DLF + S N TF L A A GLV E RLFLSM+E +++EP +HY+ MV+
Sbjct: 392 VDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVD 451
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
GR G+ EE I+ + P + +W L S +H D +L KYA ++++L P G
Sbjct: 452 LFGRKGLLEEAKALIERM-PMEPTNAVWGALFGSCLIHKDYELGKYAASRVIKLQPSHSG 510
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEELTSEVSD 276
Y GC WIE++ K++EF++ ++ SD
Sbjct: 511 RYTLLANLYSESQNWDDVARVRKQMKDQQVVKSPGCSWIEVKGKLHEFIAFDDKKPLESD 570
Query: 277 KLAEIEENM 285
L + +N+
Sbjct: 571 DLYKTLDNV 579
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%)
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q A++ K G S V N LI+ S CG + F T +K+ +SWT +I V +
Sbjct: 124 QFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRND 183
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
EA+ F + + + N T S LKA
Sbjct: 184 SSLEAMTYFVEMKRSGVAANEMTVVSVLKA 213
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
+G+ L+++ +CG DDA F P +N ++WT +I+ V + + +F++
Sbjct: 242 IGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSD 301
Query: 143 TSMNPTTFRSALKAYALMGLVGEAYRL 169
+ N T S L A A +G + R+
Sbjct: 302 VAPNEKTLSSVLSACAHVGALHRGRRV 328
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 122/241 (50%), Gaps = 4/241 (1%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
W ++ + Y E R+Q+ D S+ +L +C L +G Y
Sbjct: 217 WTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYAD 276
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G + + V N LI + ++CG ID+ F E++ +SW+ +I NHG EA++
Sbjct: 277 KAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIE 336
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF++ Q N TF L A A GL+ E R F SM+ Y+IEP EHY +V L
Sbjct: 337 LFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLL 396
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMY 250
G +G ++ LE IK + P K IW +LL S R H ++++A A++ LLEL+P G Y
Sbjct: 397 GLSGRLDQALELIKKM-PMKPDSAIWGSLLSSCRSHSNLEIAVIAMEHLLELEPADTGNY 455
Query: 251 V 251
V
Sbjct: 456 V 456
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 9/160 (5%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F D ++ ++ SC + ++G Q ++ K G S+ V N L+ + +C +DDA
Sbjct: 114 FPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHK 173
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR--SALKAYALM 160
F+ E++++SW +IS V G A +F++ Q + T F + + YA +
Sbjct: 174 VFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQ------DKTIFSWTAIVSGYARI 227
Query: 161 GLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200
G +A F M+ V IEP E ++ A + G E
Sbjct: 228 GCYADALEFFRRMQMV-GIEPDEISLVSVLPACAQLGALE 266
>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 720
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 168/375 (44%), Gaps = 56/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S+++ L C N + G Q ++K G G+ LI + +CG D A L F
Sbjct: 349 NSFTLSSALRGCSNLAMFEEGRQVHGIVSKYGFDRDKYAGSGLIELYGKCGCSDMARLVF 408
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ E + +S +I + +G EAL+LF+ N T S L A GLV
Sbjct: 409 DTLSEVDVISLNTMIYSYAQNGFGREALELFERMINLGLQPNDVTVLSVLLACNNSGLVE 468
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E LF S + I + +HY+ MV+ LGRAG EE I + L ++WRTLL
Sbjct: 469 EGCELFDSFRK-DKIMLTNDHYACMVDMLGRAGRLEEAEMLITEVTNPDL--VLWRTLLS 525
Query: 225 SSRVHGDMKLAKYALDKLLELDPG----------MYVGC--------------------- 253
+ +VH +++A+ K+LE+ PG +Y
Sbjct: 526 ACKVHRKVEMAERITRKILEIAPGDEGTLILLSNLYASTGKWKRVIEMKSKMKEMKLKKN 585
Query: 254 ----WIEIQNKIYEFVSNEEL----TSEVSDKLAEIEENMKELGFVLN------------ 293
W+EI + + F++ + + ++ + L E+ + K+LG+V +
Sbjct: 586 PAMSWVEIDKETHTFMAGDLFSHPNSEQILENLEELIKKAKDLGYVEDKSCVFQDMEETA 645
Query: 294 --RSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
RSL+Q K + G R++K++ +C HS + +S II+RE++ +D
Sbjct: 646 KERSLHQHSEKLAIAFAVWRNVGGSIRILKNLRVCVDCHSWIKIVSRIIKREIICRDSKR 705
Query: 352 FHHFKDGKCSCKDAY 366
FHHF+DG CSC D +
Sbjct: 706 FHHFRDGSCSCGDYW 720
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 81/193 (41%), Gaps = 10/193 (5%)
Query: 9 DVEIPWNLLLKACIKAKDYEMVHE----LLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
DV + L++ K +D E V L+E++Q + Y+ +L SC N +
Sbjct: 213 DVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQ-----PNEYTYASVLISCGNLKDIGN 267
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G M K G S A L+ + RC +DD+ L FK N ++WT +IS V
Sbjct: 268 GKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTSLISGLVQ 327
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
+G AL F+ N T SAL+ + + + E R + Y + +
Sbjct: 328 NGREETALIEFRKMMRDSVKPNSFTLSSALRGCSNLAMFEEG-RQVHGIVSKYGFDRDKY 386
Query: 185 HYSIMVEALGRAG 197
S ++E G+ G
Sbjct: 387 AGSGLIELYGKCG 399
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Query: 40 CCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDD 99
C +++ +L C++ ++ QA M K G + G+ L++ + +CG+I
Sbjct: 41 CDSLTTTHTFSQLLRQCIDERSISGIKNIQAQMLKSGFPVELS-GSKLVDASLKCGEIGY 99
Query: 100 ADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159
A F PE++ ++W II+ + H EA+++++ + T S KA++
Sbjct: 100 ARQLFDGMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNVLPDEYTLSSVFKAFSD 159
Query: 160 MGLVGEAYR 168
+ L EA R
Sbjct: 160 LSLEKEAQR 168
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 120/241 (49%), Gaps = 4/241 (1%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN L+ ++AK + L +Q D ++ + L++C L+VG Y+
Sbjct: 356 WNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVD 415
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K L + A+G L+++ ++CG I A F+ P +NSL+WT II HG P A+
Sbjct: 416 KHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAIS 475
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
F + + TF L A GLV + F M Y I P +HYS +V+ L
Sbjct: 476 YFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLL 535
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMY 250
GRAG EE E I+ + P + ++W L SR+HG++ + + A KLLELDP G+Y
Sbjct: 536 GRAGFLEEAEELIRSM-PFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIY 594
Query: 251 V 251
V
Sbjct: 595 V 595
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 120/241 (49%), Gaps = 4/241 (1%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN L+ ++AK + L +Q D ++ + L++C L+VG Y+
Sbjct: 356 WNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVD 415
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K L + A+G L+++ ++CG I A F+ P +NSL+WT II HG P A+
Sbjct: 416 KHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAIS 475
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
F + + TF L A GLV + F M Y I P +HYS +V+ L
Sbjct: 476 YFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLL 535
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMY 250
GRAG EE E I+ + P + ++W L SR+HG++ + + A KLLELDP G+Y
Sbjct: 536 GRAGFLEEAEELIRSM-PFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIY 594
Query: 251 V 251
V
Sbjct: 595 V 595
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 126/237 (53%), Gaps = 10/237 (4%)
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
L+SC + L VG Q + K G + V N LI + ++CG I A+L FK +
Sbjct: 461 LSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDV 520
Query: 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS 172
+SW +I+A +G+ EAL LF + + + TF L A + +GL+ + +LF
Sbjct: 521 VSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKC 580
Query: 173 MEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDM 232
M + Y+IEP EHY+ MV+ LGRAG EE + ++G+ IW LL + R+HG++
Sbjct: 581 MVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAG-IWGALLGACRIHGNL 639
Query: 233 KLAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELG 289
+LAK+A +KLLE +P + Y +SN + + D++A + MKE G
Sbjct: 640 ELAKFAAEKLLEFEPH---------KTSNYVLLSNMQAEAGRWDEVARVRRLMKEKG 687
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 93/245 (37%), Gaps = 43/245 (17%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERI---------QLCCGFIDSYSICDILNSCLNPILL 62
+ WNL++ ++ D E E+I + CGF
Sbjct: 203 VSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFA------------------ 244
Query: 63 NVGTQAQA-YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
G A+A + + I + N +I + +D+A F PEKNS+SWT +I+
Sbjct: 245 RFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVING 304
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF--LSMEEVYHI 179
V G EA L +R N + + Y + +A ++F +S+ +V
Sbjct: 305 YVRMGKLDEARQLLNQMPYR----NVAAQTAMISGYVQNKRMDDARQIFNQISIRDVV-- 358
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239
++ M+ + G +E L K +V + W T++ S G M A
Sbjct: 359 -----CWNTMIAGYSQCGRMDEALHLFKQMVKKDIVS--WNTMVASYAQVGQMDAAIKIF 411
Query: 240 DKLLE 244
+++ E
Sbjct: 412 EEMKE 416
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 77/176 (43%), Gaps = 14/176 (7%)
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+MT + ++H N +I+ ++ G+I DA F P++N +SW +I+A +++ E
Sbjct: 40 HMTHKNTVTH----NSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEE 95
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A LF + + + ++ + Y G + +A LF + Y P + MV
Sbjct: 96 ARQLFD----KMPTRDLYSWTLMITCYTRNGELAKARNLFNLLP--YKWNPV--CCNAMV 147
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246
+ F+E + L W ++L +G+M+L +++ E D
Sbjct: 148 AGYAKNRQFDEARRLFDAMPAKDLVS--WNSMLTGYTRNGEMRLGLQFFEEMAERD 201
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 19/147 (12%)
Query: 93 RCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRS 152
+ G+ID+A F+ KN+++ +ISA +G S+A LF R N ++ S
Sbjct: 27 KSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQR----NIVSWNS 82
Query: 153 ALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS--IMVEALGRAGMFEEVLEFIKGIV 210
+ AY V EA +LF M P+ + YS +M+ R G E K
Sbjct: 83 MIAAYLHNDRVEEARQLFDKM-------PTRDLYSWTLMITCYTRNG------ELAKARN 129
Query: 211 PGKLCPLIWRTLLLSSRVHGDMKLAKY 237
L P W + ++ V G K ++
Sbjct: 130 LFNLLPYKWNPVCCNAMVAGYAKNRQF 156
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKD-KQWRYT 143
N +I S+CG++D+A FK +K+ +SW ++++ G A+ +F++ K+
Sbjct: 361 NTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIV 420
Query: 144 SMNP--------TTFRSALKAYALMGLVGE 165
S N ++ ALK++ LMG G+
Sbjct: 421 SWNSLISGLTQNGSYLDALKSFMLMGHEGQ 450
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 170/375 (45%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ ++++C N L Y K G + N LI++ ++CG + A F
Sbjct: 348 DQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVF 407
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++ P KN +SW+ +I+A HG A+ LF + + N TF L A + GLV
Sbjct: 408 ENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVE 467
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
E + F SM + I P EHY MV+ RA + +E I+ +P +IW +L+
Sbjct: 468 EGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIE-TMPFPPNVIIWGSLMS 526
Query: 225 SSRVHGDMKLAKYALDKLLELDP----------GMY--------VG-------------- 252
+ + HG+++L ++A +LLEL+P +Y VG
Sbjct: 527 ACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKE 586
Query: 253 ---CWIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVLNRS----------- 295
IE+ N+++ F+ + + E+ KL + +K +G+ + S
Sbjct: 587 KACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGILVDLEEEEK 646
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
L+ ++ A+ GLI R++K++ +C HS + +S + E+V++D
Sbjct: 647 KEVVLWHSEKLALCYGLIGERKESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVMRDRTR 706
Query: 352 FHHFKDGKCSCKDAY 366
FHHF G CSC+D +
Sbjct: 707 FHHFNGGICSCRDYW 721
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 72/186 (38%), Gaps = 31/186 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN+++ + Y+ V +L E ++ D+ +C +L++C + L+ G +
Sbjct: 183 VTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQF 242
Query: 72 MTKRGLISHPAVGNCLININSRCGK-------------------------------IDDA 100
+ G + L+N+ + CG + DA
Sbjct: 243 IKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDA 302
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160
F EK+ + W+ +IS P EAL LF + Q R + T S + A A +
Sbjct: 303 RFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANV 362
Query: 161 GLVGEA 166
G + +A
Sbjct: 363 GALVQA 368
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 21/221 (9%)
Query: 42 GF-IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLI-SHPAVGNCLININSRCGKIDD 99
GF +D +S +L + LN+G + +K G + P + + LI + + CG+I D
Sbjct: 110 GFPLDRFSFPPLLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMD 169
Query: 100 ADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159
A F ++ ++W +I + H L L+++ + T + + L A A
Sbjct: 170 ARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAH 229
Query: 160 MGLV--GEAYRLFL---SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL 214
G + G+A F+ HI+ S +V G E + +P K
Sbjct: 230 AGNLSYGKAIHQFIKDNGFRVGSHIQTS------LVNMYANCGAMHLARE-VYDQLPSK- 281
Query: 215 CPLIWRTLLLSSRVH-GDMKLAKYALDKLLELDPGMYVGCW 254
++ T +LS G ++ A++ D+++E D + CW
Sbjct: 282 -HMVVSTAMLSGYAKLGMVQDARFIFDRMVEKD----LVCW 317
>gi|302142415|emb|CBI19618.3| unnamed protein product [Vitis vinifera]
Length = 576
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 104/373 (27%), Positives = 175/373 (46%), Gaps = 39/373 (10%)
Query: 18 LKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGL 77
LK + + E +++ ++ + + + ++L C++ LL VG +A + + L
Sbjct: 219 LKRLCRQGNVEAALHVIDEMERNGVTVSALGLAELLQVCIDLKLLEVGKRAHELVMR--L 276
Query: 78 ISHPAV--GNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
S+P+V N L+ + G A F+ + SW +I V +G EAL +F
Sbjct: 277 SSNPSVIVFNKLLEMYFDLGDTRSACRVFEEMRGRTLDSWNRMILGLVKNGEGEEALAIF 336
Query: 136 KDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGR 195
+ + +TF L A +G V E F SM Y I PS EH++I+V+ GR
Sbjct: 337 SKLKKDGIEPDGSTFIGVLSACECLGAVEEGLAHFNSMSTDYGITPSMEHFAIIVDLFGR 396
Query: 196 AGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGCWI 255
E EFI + P + +IW+TL KY + ++ + G +
Sbjct: 397 LQKIAEAKEFIASM-PLEPSSMIWQTL------------QKYLKTERVDEPAPLTTGSGL 443
Query: 256 EIQNKIY---EFVSNEELTS----EVSDKLAEIEENMKELGFVLNRS------------- 295
++ +K FVS ++ S + +KL + + +KE G+V +
Sbjct: 444 KLSHKKRVKSNFVSKQKNASPEKSKAYEKLRSLHKGVKEAGYVSDTRYVLHDLDQEAKEK 503
Query: 296 --LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
LY ++ A+A GLIS P G R+IK++ +CG H+ + +S I +RE++V+D FH
Sbjct: 504 SLLYHSERLAIAYGLISTPPGTTLRIIKNLRICGDCHNFIKILSNIEKREIIVRDNKRFH 563
Query: 354 HFKDGKCSCKDAY 366
HF+DGKCSC D +
Sbjct: 564 HFRDGKCSCGDYW 576
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 135/278 (48%), Gaps = 10/278 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
PWN L+ ++ K + L +Q + ++ ++L++C L +G Y
Sbjct: 322 FPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHY 381
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + L A+G L+++ ++CG I A FK P+KN+L+WT +I NHGH EA
Sbjct: 382 IDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEA 441
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
++ F+ + TF L A GLV E + F M E YH+E +HYS M++
Sbjct: 442 IEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMID 501
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYV 251
LGRAG +E + + +P ++W L + R+HG++ L + A KL+ELDP
Sbjct: 502 LLGRAGHLDEAEQLVN-TMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPS--- 557
Query: 252 GCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELG 289
+ IY ++N + + K ++ M+ LG
Sbjct: 558 ------DSGIYVLLANMYAEANMRKKADKVRVMMRHLG 589
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 87 LININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN 146
+I ++R G ++DA + F PE++ W +++ V + EA+ LF + Q N
Sbjct: 296 MIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPN 355
Query: 147 PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI-----MVEALGRAGMFEE 201
T + L A + +G L + M ++I+ + + S+ +V+ + G ++
Sbjct: 356 EITMVNLLSACSQLG------ALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKK 409
Query: 202 VLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
+ K I P K L W ++ HG A ++++L
Sbjct: 410 AICIFKEI-PDKNA-LTWTAMICGLANHGHADEAIEYFQRMIDL 451
Score = 38.1 bits (87), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 79/191 (41%), Gaps = 7/191 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGTQAQ 69
+ WN L+ +++ EL R+ + D ++ ++ C L +G +
Sbjct: 188 VSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLH 247
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
++ +G+ + N ++++ +CG ++ A F+ K +SWT +I G
Sbjct: 248 EFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMME 307
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
+A LF + R + + + + Y EA LF M+E ++P+E +
Sbjct: 308 DARMLFDEMPER----DVFPWNALMAGYVQNKQGKEAIALFHEMQE-SKVDPNEITMVNL 362
Query: 190 VEALGRAGMFE 200
+ A + G E
Sbjct: 363 LSACSQLGALE 373
>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/390 (25%), Positives = 174/390 (44%), Gaps = 56/390 (14%)
Query: 32 ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91
E+ +R+Q + + +L + LL+ G QA ++ +R L + + N LI++
Sbjct: 239 EMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMY 298
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK-DKQWRYTSMNPTTF 150
S+CG + A F + PE+ ++SW ++ HG E L+LF+ + + + T
Sbjct: 299 SKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTL 358
Query: 151 RSALKAYALMGLVGEAYRLFLSM-EEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI 209
+ L + + ++ M Y I+P EHY +V+ LGRAG +E EFIK +
Sbjct: 359 LAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRM 418
Query: 210 VPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMYV--------------- 251
P K + +LL + RVH + + +Y +L+E++P G YV
Sbjct: 419 -PSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDV 477
Query: 252 -----------------GCWIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFV 291
WI+ + ++ F +N+ EV K+ EI MK+ G+V
Sbjct: 478 NNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYV 537
Query: 292 LNRS---------------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFM 336
+ S L ++ A+ GLI+ G+P RV K++ +C H+ +
Sbjct: 538 PDISCVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNFAKIF 597
Query: 337 STIIERELVVKDPGSFHHFKDGKCSCKDAY 366
S + ERE+ ++D FH G CSC D +
Sbjct: 598 SKVFEREVSLRDKNRFHQIVKGICSCGDYW 627
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 63/122 (51%)
Query: 42 GFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD 101
G + ++ +L SC+ L +G Q + K SH VG+ L+++ ++ G+I++A
Sbjct: 148 GKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAR 207
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
F+ PE++ +S T II+ G EAL++F+ Q N T+ S L A + +
Sbjct: 208 EIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLA 267
Query: 162 LV 163
L+
Sbjct: 268 LL 269
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+LN+CL+ L G + A+M K + + L+ +C ++DA PEKN
Sbjct: 57 LLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKN 116
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+SWT +IS GH SEAL +F + N TF + L +
Sbjct: 117 VVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTS 161
>gi|147843478|emb|CAN82063.1| hypothetical protein VITISV_016431 [Vitis vinifera]
Length = 755
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 153/328 (46%), Gaps = 16/328 (4%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D + +L C +G Q + K G +S VGN +I + S+C + DA
Sbjct: 439 VDXVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGVGNSIITMYSKCSNMXDAIKV 498
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG-- 161
F P + +SW +I+ + H EAL ++ + + TF + AY
Sbjct: 499 FNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWSKMEKAGIKPDTVTFVLIISAYRHTNSN 558
Query: 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221
LV RLFLSM+ +YHI+P+ HY+ +V LG G+ EE E I + P + +WR
Sbjct: 559 LVDNCRRLFLSMKTIYHIDPTVXHYTSLVGVLGYWGLLEEAEEMINKM-PIEPEASVWRA 617
Query: 222 LLLSSR---VHGDMKLAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNEELTSEVSDKL 278
LL + R +H + + YA DK ++ G + I + + S L
Sbjct: 618 LLDACRSWIIHENKVHSFYARDKSHPQAKDIHSGLELLIMECL-----KAGYVPDTSFVL 672
Query: 279 AEIEENMKELGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMST 338
E+EE+ K+ + Y + A GL+ G R++K++ +CG H+ +++S
Sbjct: 673 HEVEEHQKK-----DFLFYHSAKIAATYGLLMTRPGRXIRIVKNILLCGDCHTFLKYVSI 727
Query: 339 IIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ RE+ ++D H F +G+CSCKD +
Sbjct: 728 VTGREIFLRDASGHHCFLNGQCSCKDYW 755
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 58/128 (45%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ + ++ K+ E+ R++ ++ +S IL C+ + L +G Q A
Sbjct: 139 VSYTAMISGFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAI 198
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G +++ V N L+ + +CG +D F ++ SW +IS+ V A
Sbjct: 199 VIKMGFLNYTFVSNALMGLYGKCGYLDXVLQLFDEMXHRDIASWNTVISSVVKEMMYERA 258
Query: 132 LDLFKDKQ 139
+LF+D +
Sbjct: 259 FELFRDMR 266
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+ ++ +LN+C + + Q ++ K G S+ + L+++ +RCG++ DA
Sbjct: 335 LTDFTXTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKM 394
Query: 104 FKSTP--EKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
F + S+ WT +I + P EA+ LF Q
Sbjct: 395 FSQGXFXQSGSIIWTSMICGYARNAQPEEAISLFCQSQ 432
>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 708
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 150/322 (46%), Gaps = 36/322 (11%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
S+ S + WN +L + E +L ++ ID Y+ +L SC + L +
Sbjct: 364 SMESKDRVSWNSILTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQL 423
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Q K G S+ V + LI + S+CG I+DA +F+ T + +S++W I+ A
Sbjct: 424 GQQIHVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFEKTAKDSSITWNSIMFAYAQ 483
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
HG AL LF + + M+ TF +AL A + +GLV + L SM Y I P E
Sbjct: 484 HGQGDVALGLFFQMRDKKVKMDHITFVAALTACSHIGLVEQGRYLLKSMASDYGISPRME 543
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
HY+ V+ GRAG +E I+ + P ++W+TLL + R GD++LA LLE
Sbjct: 544 HYACAVDLFGRAGYLDEAKALIESM-PFDPDAMVWKTLLGACRACGDIELAAQVASHLLE 602
Query: 245 LDP----------GMY--------VGC-----------------WIEIQNKIYEFVSNEE 269
L+P MY C WIE++N+++ F++++
Sbjct: 603 LEPEEHCTYVILSNMYGHLKRWDEKACMARLMRERKVKKVPGWSWIEVKNEVHAFIADDR 662
Query: 270 LTSEVSDKLAEIEENMKELGFV 291
S + +E+ M+++ ++
Sbjct: 663 CHSHFEEIYQILEQLMEDIKWL 684
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + + EL + ++ D+Y+ IL L+VG Q +
Sbjct: 68 VTWNTMISGYVNSGSLGSAWELYKSMKSFGLMPDAYTFGSILKGVACACRLDVGQQVHSL 127
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G H G+ L+++ ++C ++ DA + FK P +NS+SW +I+ V G A
Sbjct: 128 IVKMGYEEHVYAGSALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTA 187
Query: 132 LDLFKDKQWRYTSMNPTTF 150
L + + ++ TF
Sbjct: 188 FWLLRCMEEEGVRLDDGTF 206
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/227 (20%), Positives = 97/227 (42%), Gaps = 10/227 (4%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L A + E +L +Q D Y+ I+++C + + G
Sbjct: 271 VTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISACSHK---DNGKSLHGL 327
Query: 72 MTKRGLISHPAVGNCLIN--INSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ KRGL + N +I + S ++DA F S K+ +SW I++ GH
Sbjct: 328 VIKRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSMESKDRVSWNSILTGFSQTGHSE 387
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL-FLSMEEVYHIEPSEEHYSI 188
AL LF ++ ++ F + L++ + + + ++ L+++ + E ++ S
Sbjct: 388 NALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLGQQIHVLTVKSGF--ESNDFVASS 445
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLA 235
++ + GM E+ + + K + W +++ + HG +A
Sbjct: 446 LIFMYSKCGMIEDARKSFEK--TAKDSSITWNSIMFAYAQHGQGDVA 490
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 1/129 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ + D++ LL ++ +D + +L + Q
Sbjct: 169 VSWNALIAGFVLEGDHDTAFWLLRCMEEEGVRLDDGTFSPLLTLLDEKKFYKLTMQLHCK 228
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFK-STPEKNSLSWTFIISARVNHGHPSE 130
+ K G+ V N I S+CG ++DA+ F + ++ ++W +++A + H
Sbjct: 229 IIKHGVQFDNTVCNATITSYSQCGSLEDAERVFDGAVGSRDLVTWNSMLAAFLAHDRKET 288
Query: 131 ALDLFKDKQ 139
A LF D Q
Sbjct: 289 AFKLFLDMQ 297
>gi|15221304|ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74600, chloroplastic; Flags: Precursor
gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical protein; 84160-81473 [Arabidopsis thaliana]
gi|332197493|gb|AEE35614.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 895
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 139/261 (53%), Gaps = 9/261 (3%)
Query: 33 LLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91
LL R + GF +DS++I IL + ++G Q AY+TK GL + P+VG+ L+ +
Sbjct: 638 LLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMY 697
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR 151
S+ G IDD AF + ++WT +I++ HG +EAL ++ + + + TF
Sbjct: 698 SKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFV 757
Query: 152 SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKG--I 209
L A + GLV E+Y SM + Y IEP HY MV+ALGR+G E FI I
Sbjct: 758 GVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHI 817
Query: 210 VPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNEE 269
P L+W TLL + ++HG+++L K A K +EL+P G +I + N + E +E
Sbjct: 818 KPD---ALVWGTLLAACKIHGEVELGKVAAKKAIELEPSD-AGAYISLSNILAEVGEWDE 873
Query: 270 LTSEVSDKLAEIEENMKELGF 290
+ E + KL + KE G+
Sbjct: 874 V--EETRKLMKGTGVQKEPGW 892
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 5/158 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGTQAQAY 71
WN ++ ++ ++Y V +L ++C GF DSY+ +L +C + L G QA
Sbjct: 219 WNTIIAGALRNQNYGAVFDLFH--EMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQAR 276
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G V ++++ ++CG + +A F P + +SWT ++S A
Sbjct: 277 VIKCG-AEDVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSA 335
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
L++FK+ + +N T S + A +V EA ++
Sbjct: 336 LEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQV 373
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +S+C +L S L+ LN+G Q Y K GL+ VG+ L + S+CG ++++ F
Sbjct: 452 DEFSVCSLL-SVLD--CLNLGKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLF 508
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
+ P K++ W +IS +G+ EA+ LF + TS + +T + L
Sbjct: 509 QGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVL 558
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L C + L G + Y + G+ +G+ L+N+ S+CG + A +
Sbjct: 550 DESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVY 609
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159
PE + +S + +IS HG + LF+D +M+ S LKA AL
Sbjct: 610 DRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAAL 664
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 150/305 (49%), Gaps = 10/305 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ ++++ ++ + E + + ++ +L++C + L+ G + Y
Sbjct: 272 VTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCY 331
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M K + + G LI++ +CG +++A L F+ EKN +WT +I+ HG+ +A
Sbjct: 332 MIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDA 391
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
DLF + S N TF + L A A GLV E RLFLSM+ +++EP +HY+ MV+
Sbjct: 392 FDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVD 451
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYV 251
GR G+ EE I+ + P + ++W L S +H D +L KYA ++++L P
Sbjct: 452 LFGRKGLLEEAKALIERM-PMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPS--- 507
Query: 252 GCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISF 311
+ Y ++N S+ D++A + + MK+ V + ++K I+F
Sbjct: 508 ------HSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAF 561
Query: 312 PHGMP 316
P
Sbjct: 562 DDKKP 566
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%)
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Q A++ K GL S P V N LI+ S G D A F +K+ ++WT +I V +G
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNG 183
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
SEA+ F + + + N T S LKA
Sbjct: 184 SASEAMVYFVEMKKTGVAANEMTVVSVLKA 213
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
+G+ L+++ +C DDA F P +N ++WT +I+ V + + +F++
Sbjct: 242 IGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSD 301
Query: 143 TSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV 202
+ N T S L A A +G + R+ M + IE + + +++ + G EE
Sbjct: 302 VAPNEKTLSSVLSACAHVGALHRGRRVHCYMIK-NSIEINTTAGTTLIDLYVKCGCLEEA 360
Query: 203 L 203
+
Sbjct: 361 I 361
>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
Length = 665
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/380 (27%), Positives = 163/380 (42%), Gaps = 68/380 (17%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS ++ +L C +VG + + ++ + + + N L+++ + CG + DA F
Sbjct: 292 DSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIF 351
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++ +SWT IISA HGH EA+DLF+ + + F + L A + GL+
Sbjct: 352 DLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLA 411
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIV--PGKLCPLIWRTL 222
+ F SM YHI P EHY+ MV+ LGRAG E +FI ++ P + +W L
Sbjct: 412 DGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPNE---RVWGAL 468
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCW---------------- 254
L + R+H +M + A D L L P G YV G W
Sbjct: 469 LQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIK 528
Query: 255 -------IEIQNKIYEF-----------------------VSNEELTSEVSDKLAEIEEN 284
+E+ ++++ F + EV L ++EE
Sbjct: 529 KFPGTSIVELGDQVHTFHIGDRCHPQSEMIYHKLDELLGKIRGMGYNPEVEATLHDVEEE 588
Query: 285 MKELGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIEREL 344
KE S++ K+ A+A L++ G RV ++ C H A + +S I RE+
Sbjct: 589 DKEDHL----SVHSEKL-AIAFLLLNTSPGTIIRVTMNLRTCSDCHLAAKLISIITCREI 643
Query: 345 VVKDPGSFHHFKDGKCSCKD 364
V+KD HH G CSC D
Sbjct: 644 VLKDTNRIHHIVQGVCSCGD 663
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
F D Y+ L SC L +G Q + + K L + V + I++ SRCG+ +DA
Sbjct: 120 FPDHYTYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYR 179
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
F P ++ +SW +I+ G A+++FK
Sbjct: 180 VFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFK 213
>gi|357117625|ref|XP_003560564.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g16470-like [Brachypodium distachyon]
Length = 435
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 122/280 (43%), Gaps = 10/280 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L+ C + E+ ++ D ++ +L +C L G +
Sbjct: 102 VAWNALISGCTRGGLESQALEMFGSMRAEGLRPDQFTFSSVLCACARLAALQHGWRVHGV 161
Query: 72 MTKRGLISHPAVGN-CLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
M K ++ N L+++ +C +DA AF + PE+N WT +IS HGH E
Sbjct: 162 MVKSDVVGGNVFANSALVDMYLKCSSTEDARRAFAAAPERNVTMWTAVISGHGQHGHVGE 221
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL LF N TF + L A A GLV E R F SM Y + P EHY+ +V
Sbjct: 222 ALALFDQMTRDGFRPNDVTFLAVLSACAHGGLVDEGLRHFSSMPLDYGLTPKSEHYAAVV 281
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMY 250
+ L R G + E +K + + ++W LL + R HGD++L + A + L PG
Sbjct: 282 DMLARVGRLHDAYELVKNLPDCQEHSVVWGALLGACRKHGDVRLVELAARRFFRLQPG-- 339
Query: 251 VGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGF 290
Y ++N E+ D +A E MK LG
Sbjct: 340 -------NAGKYVVLANTYAACEMWDSVASTHETMKSLGI 372
>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g35130, chloroplastic; Flags: Precursor
gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 804
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 110/411 (26%), Positives = 186/411 (45%), Gaps = 59/411 (14%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
I WN ++ A ++ K+Y + EL + + DS +I IL + + L+ G + A
Sbjct: 397 ISWNSIIAAYVQNGKNYSAL-ELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHA 455
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ K S+ + N L+++ + CG ++DA F K+ +SW II A HG
Sbjct: 456 YIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRI 515
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
++ LF + + N +TF S L A ++ G+V E + F SM+ Y I+P EHY M+
Sbjct: 516 SVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCML 575
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DP 247
+ +GR G F F++ + P IW +LL +SR H D+ +A++A +++ ++ +
Sbjct: 576 DLIGRTGNFSAAKRFLEEM-PFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNT 634
Query: 248 GMYV---------GCW-----------------------IEIQNKIYEFVSNEELTSEVS 275
G YV G W +E + K + F +N + + +
Sbjct: 635 GCYVLLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVEAKGKSHVF-TNGDRSHVAT 693
Query: 276 DKLAEI---------EEN--------MKELGFVLNRSLYQTKMK---AVALGLISFPHGM 315
+K+ E+ EE+ ++ V +RS + A GLIS G
Sbjct: 694 NKIYEVLDVVSRMVGEEDIYVHCVSRLRPETLVKSRSNSPRRHSVRLATCFGLISTETGR 753
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V + +C H S + RE+VV D FHHF +G+CSC + +
Sbjct: 754 RVTVRNNTRICRKCHEFLEKASRLTRREIVVGDSKIFHHFSNGRCSCGNYW 804
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Y +RG + H + LI++ CG++ A++ F EKN +SW II+A V
Sbjct: 349 GRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQ 408
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+G AL+LF++ + TT S L AYA
Sbjct: 409 NGKNYSALELFQELWDSSLVPDSTTIASILPAYA 442
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+++K Y + R+ D+++ ++ S L G + A +
Sbjct: 98 WNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVI 157
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G +S V N LI++ + G DA+ F+ PE++ +SW +IS + G +L
Sbjct: 158 KLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLM 217
Query: 134 LFKD 137
LFK+
Sbjct: 218 LFKE 221
>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 868
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 131/242 (54%), Gaps = 10/242 (4%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+++ +L++C N + +G Q A M K L+S + + L+++ S+CG + D+ L F
Sbjct: 560 DNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMF 619
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ P+++S++W +I HG EAL+LF+ N TF S L+A + +G
Sbjct: 620 RKAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAK 679
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ F M +Y +EP EHYS MV+ LGR+G EE L I+ + P + +IWRTLL
Sbjct: 680 KGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDM-PFEADAIIWRTLLS 738
Query: 225 SSRVHGDMKLAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEEN 284
++ G++++A+ A LL+LDP + Y +SN + + ++++I +
Sbjct: 739 ICKIQGNVEVAEKAASSLLKLDPE---------DSSAYTLLSNIYADAGMWQQVSKIRQT 789
Query: 285 MK 286
M+
Sbjct: 790 MR 791
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 67/153 (43%), Gaps = 12/153 (7%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFID------SYSICDILNSCLNPILLNVG 65
+ WN L+ ++ D + + +++ D S IC +L + +G
Sbjct: 123 VSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVSLKICSLLEDQV------LG 176
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Q + G G+ L+++ ++C ++D+ F P+KN +SW+ I+ V +
Sbjct: 177 IQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQN 236
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
L LFK+ Q + ++ +T+ S ++ A
Sbjct: 237 DQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCA 269
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 61/158 (38%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W+ + C++ +L + +Q + + + SC +GTQ +
Sbjct: 224 ISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCH 283
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K S VG +++ ++C + DA F P+ N S+ +I + +A
Sbjct: 284 ALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQA 343
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
LF Q S + + AL A A++ E +L
Sbjct: 344 FKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQL 381
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 3/125 (2%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
I C N L G +A A+M G V NCLI + +C ++ A F+ P+++
Sbjct: 30 IFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRD 89
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
+SW ++ G A +F + ++ S + Y G + ++ +FL
Sbjct: 90 IVSWNTMVFGCAGAGRMELAQAVFNSMPHH---GDVVSWNSLISGYLQNGDIQKSIAVFL 146
Query: 172 SMEEV 176
M ++
Sbjct: 147 KMRDL 151
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 9/189 (4%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L +C + G + + K G+ VG+ L+++ S+CG +++A+
Sbjct: 459 DEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIH 518
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
E+ +SW IIS ++ F + T+ + L A + VG
Sbjct: 519 YRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVG 578
Query: 165 EAYRLFLSMEEVYHIEPSEEHY--SIMVEALGRAG-MFEEVLEFIKGIVPGKLCPLIWRT 221
++ M +E + Y S +V+ + G M + +L F K K + W
Sbjct: 579 LGKQIHAQM---IKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKA---PKRDSVTWNA 632
Query: 222 LLLSSRVHG 230
++ HG
Sbjct: 633 MICGFAYHG 641
>gi|297842209|ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
lyrata]
gi|297334827|gb|EFH65245.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
lyrata]
Length = 717
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 138/259 (53%), Gaps = 5/259 (1%)
Query: 33 LLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91
LL R + GF +DSY+I IL + + +G Q AY+TK GL + P+VG+ L+ +
Sbjct: 460 LLFRDMVMSGFSMDSYAISSILKAAVLSEESELGAQVHAYITKIGLCTEPSVGSSLLTMY 519
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR 151
S+ G I+D AF + ++WT +I++ HG +EAL ++ + + + TF
Sbjct: 520 SKFGSIEDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYCLMKEKGFKPDKVTFV 579
Query: 152 SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVP 211
L A + GLV E Y SM + Y IEP HY MV+ALGR+G E FI P
Sbjct: 580 GVLSACSHGGLVEEGYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAENFIN-TRP 638
Query: 212 GKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNEELT 271
K L+W TLL + +++GD++L K A K +EL+P G ++ + N + E +E+
Sbjct: 639 IKPDALVWGTLLAACKIYGDVELGKLAAKKAIELEPSD-AGAYVSLSNILAEVGEWDEV- 696
Query: 272 SEVSDKLAEIEENMKELGF 290
E + KL + KE G+
Sbjct: 697 -EETRKLMKGTGVQKEPGW 714
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +S+C +L S L+ LN+G Q +Y K GLI VG+ L + S+CG ++++ F
Sbjct: 274 DEFSVCSLL-SVLD--CLNLGKQVHSYTLKSGLILDLTVGSSLFTMYSKCGSLEESYSLF 330
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
+ P K++ W +IS +G+ EA+ LF + TS + +T + L
Sbjct: 331 QEIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDEGTSPDESTLAAVL 380
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 5/158 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGTQAQAY 71
WN ++ ++ ++Y V +L ++C GF DSY+ +L +C + L G QA
Sbjct: 41 WNTIIAGALRNQNYGAVFDLFH--EMCNGFQKPDSYTYSSVLAACASLEELRFGKVVQAR 98
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G V ++++ ++CG + +A F + +SWT ++S A
Sbjct: 99 VIKCG-AEDVFVCTSIVDLYAKCGHMAEAREVFSRISNPSVVSWTVMLSGYTKSNDAFSA 157
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
L++F++ + +N T S + A +V EA ++
Sbjct: 158 LEIFREMRHSGVEINSCTVTSVISACGRPSMVCEASQV 195
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +L C + L + Y + G+ +G+ L+N S+CG + A +
Sbjct: 372 DESTLAAVLTVCSSLPSLPRSKEIHGYTLRAGIDRGMPLGSALVNTYSKCGSLKLARKVY 431
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159
PE + +S + +IS HG + LF+D SM+ S LKA L
Sbjct: 432 DRLPEMDPVSCSSLISGYSQHGLVQDGFLLFRDMVMSGFSMDSYAISSILKAAVL 486
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++L K+ D E+ ++ I+S ++ ++++C P ++ +Q A+
Sbjct: 139 VSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACGRPSMVCEASQVHAW 198
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE-KNSLSWTFIISARVNHGHPSE 130
+ K G +V LI++NS+ G I+ ++ F+ + + ++++ + P +
Sbjct: 199 VFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIVNVMVTSFSQNKKPGK 258
Query: 131 ALDLFKDKQWRYTSMNPTTF 150
A+ LF + +NP F
Sbjct: 259 AIRLF--TRMLQEGLNPDEF 276
>gi|242058045|ref|XP_002458168.1| hypothetical protein SORBIDRAFT_03g028130 [Sorghum bicolor]
gi|241930143|gb|EES03288.1| hypothetical protein SORBIDRAFT_03g028130 [Sorghum bicolor]
Length = 694
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 132/272 (48%), Gaps = 10/272 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ + D+++ EL +Q D Y+ +LN+C
Sbjct: 365 VSWNTMISSYAAVHDFDLSFELFREMQRNDTRPDDYTFTSVLNACSFTCNHRTVMALHGQ 424
Query: 72 MTKRGLI-SHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
M + GL S+ N L++ +CG ID+A F T K+++SW IIS G P +
Sbjct: 425 MIRMGLCHSYVDDMNSLMDAYGKCGFIDEAQNIFDETDRKDTISWNIIISCYGYSGFPQQ 484
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+ LF Q + TF S L A + GLV EA F M Y+I E HY+ ++
Sbjct: 485 AIRLFHQMQDQGYKPTRVTFISVLAACSHAGLVDEALHYFEGMRRDYNITADEAHYACII 544
Query: 191 EALGRAGMFEEVLEFIKG--IVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248
+ GRAG ++ EFI+G +VP +W LL S R+HG++ LA+ A KL+ELDP
Sbjct: 545 DCFGRAGQLKQAYEFIRGMPVVPNA---CVWGALLSSCRIHGNIGLAEIAAKKLIELDP- 600
Query: 249 MYVGCWI---EIQNKIYEFVSNEELTSEVSDK 277
+ G W+ +I K + +L + + DK
Sbjct: 601 QHSGYWMLLKDIYAKSMRWNDVSQLRTAMRDK 632
>gi|242056803|ref|XP_002457547.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
gi|241929522|gb|EES02667.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
Length = 762
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 149/323 (46%), Gaps = 51/323 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCC-----GFIDSYSICDILNSCLNPI-LLNVG 65
I W L+ C++ E E +QL C G + C + + + ++ +G
Sbjct: 402 ISWTALITGCVQNGQNE------EALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGIG 455
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
Q AY+TK G + G+ L+++ ++CG +D+A F PEKNS++W +ISA +
Sbjct: 456 RQLHAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQY 515
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
G A+ +F +P TF S L A GL E + F M Y + P +EH
Sbjct: 516 GQAKNAIRMFDSMLHCGLCPDPVTFLSVLAACGHNGLAEECMKYFDLMRYYYSMSPWKEH 575
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245
YS +++ LGRAG F+++ + I + P + P+IW ++L S R++G+ LA A +KL +
Sbjct: 576 YSCVIDTLGRAGCFDKIQKVIDEM-PFEDDPIIWSSILHSCRIYGNQDLATVAAEKLFTM 634
Query: 246 DP----------------GMYVGC-------------------WIEIQNKIYEFVSNEE- 269
P G + G W+EI+ KIY F SN+
Sbjct: 635 VPTDATAYVILSNIYAKAGNWEGAARVKKIMRDRGVKKESGNSWVEIKQKIYMFSSNDHT 694
Query: 270 --LTSEVSDKLAEIEENMKELGF 290
+ E+ +L + E M + G+
Sbjct: 695 NPMIDEIKKELERLYEEMDKQGY 717
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 105/233 (45%), Gaps = 3/233 (1%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ +N+++ AC + M +L +Q + +L+ + +G Q A
Sbjct: 300 NVSYNVMISACSWNRCGGMALQLFRDMQTLGFDRRTLPYASLLSVAGALPHIKIGRQIHA 359
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ GL VGN LI++ S+CG +D A F +K ++SWT +I+ V +G E
Sbjct: 360 QLILHGLTLEDFVGNALIDMYSKCGMLDAAKTIFAYKSDKTAISWTALITGCVQNGQNEE 419
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL LF D + S + T S +K+ + + ++G +L + + H+ PS S ++
Sbjct: 420 ALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGIGRQLHAYLTKSGHM-PSVFSGSALL 478
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
+ + G +E + + P K + W ++ + +G K A D +L
Sbjct: 479 DMYAKCGCLDEAIRTFNEM-PEK-NSITWNAVISAYAQYGQAKNAIRMFDSML 529
Score = 37.7 bits (86), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 54/128 (42%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I +N ++ C + + EL ++ ++ +L + L++G Q
Sbjct: 200 ITYNAMIMGCSRQGRHGEALELFAAMRREGVDTSHFTFSSLLTVATGMVDLHLGRQIHGL 259
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + V N L++ S+C + D F E++++S+ +ISA + A
Sbjct: 260 FVRANPSCNVFVNNALLDFYSKCDSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMA 319
Query: 132 LDLFKDKQ 139
L LF+D Q
Sbjct: 320 LQLFRDMQ 327
>gi|449509043|ref|XP_004163477.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial-like [Cucumis sativus]
Length = 523
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 128/244 (52%), Gaps = 5/244 (2%)
Query: 24 AKDYEMVHELLE---RIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISH 80
+K +E + LE +Q C + + ++ +C G Q Q + K +
Sbjct: 247 SKTHEHAKKSLEFYIDMQRLCFSPNISTFSSVIGACSVLAAFEAGQQIQCQLMKTKFFTD 306
Query: 81 PAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQW 140
+G+ LI++ S+CG+ DDA F E+N SWT +I +G+PSEAL+LF Q
Sbjct: 307 IRMGSALIDMYSKCGRTDDARQVFDQMQERNVFSWTSMIDGYGKNGYPSEALELFCIMQE 366
Query: 141 RYT-SMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMF 199
++ N TF SAL A A GLV E + +F SME Y ++P EHY+ MV+ LGRAG
Sbjct: 367 KHQIQPNFVTFLSALSACAHGGLVEEGWEIFESMERDYSLKPKMEHYACMVDLLGRAGSL 426
Query: 200 EEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGCWIEIQN 259
+ EF+ + P +W LL S+++HG++++A A D+L +L+ G ++ + N
Sbjct: 427 LQAWEFVMQM-PETPNSDVWAALLSSAKLHGNVEIACMAADELFKLNADSRPGAYVALSN 485
Query: 260 KIYE 263
E
Sbjct: 486 TFAE 489
>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Vitis vinifera]
Length = 1545
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 115/406 (28%), Positives = 183/406 (45%), Gaps = 66/406 (16%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
LI WN L+ ++ + ++Q C +S ++ IL +C N +
Sbjct: 487 GLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPACANLVAAKK 546
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
+ + +R L S +V NCLI+ ++ G I A F+ K+ +SW +I+ V
Sbjct: 547 VKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIAGYVL 606
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
HG ALDLF + TF S + A++L G+V + ++F SM E Y I P E
Sbjct: 607 HGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMVDKGKQVFSSMMEDYQILPGLE 666
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGI-VPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
H+S M++ LGR+G E +EFI+ + + C IW LL +S++HG++ LA A + LL
Sbjct: 667 HHSAMIDLLGRSGKLGEAIEFIEDMAIEPDSC--IWAALLTASKIHGNIGLAIRAGECLL 724
Query: 244 ELDPG----------MY------------------------VGC-WIEIQNKIYEFVSN- 267
EL+P MY +GC WIE +N ++ FV++
Sbjct: 725 ELEPSNFSIHQQILQMYALSGKFEDVSKLRKSEKRSETKQPLGCSWIEAKNIVHTFVADD 784
Query: 268 -------------EELTSEVS-----DKLAEIEENMKELGFVLNRSLYQTKMKAVALGLI 309
E + +V D+L EE +E+G V + L A+A LI
Sbjct: 785 RSRPYFDFLHSWIENVARKVKAPDQHDRLFIEEEEKEEIGGVHSEKL------ALAFALI 838
Query: 310 SFPHGMP--TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
P P R++K++ MCG H +F+S + E+ + D H
Sbjct: 839 D-PSCAPRSVRIVKNLRMCGDCHGTAKFLSMLYSCEIYLSDSKCLH 883
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 1/170 (0%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
++ DV W ++ + EL + L + ++ +++C + L G
Sbjct: 317 IVPDV-FTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACASLKALKKG 375
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
+ + K G + VGN LI++ S+ G+++DA F +K+ +W +I
Sbjct: 376 MELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIGGYCQA 435
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175
G+ +A DLF N T+ + + Y G +A LF ME+
Sbjct: 436 GYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRMEK 485
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 50/254 (19%), Positives = 107/254 (42%), Gaps = 15/254 (5%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + + IL +C N G + + + G+ + V N ++ + ++CG++ A F
Sbjct: 184 DEFLLPKILQACGNCGDAETGKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFF 243
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++ ++ +SW II+ G ++ LF+ Q T+ + +Y+ G
Sbjct: 244 ENMDYRDRVSWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCD 303
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+A L ME + I P ++ M+ + + LE + ++ + P + +
Sbjct: 304 DAMELMKKMES-FRIVPDVFTWTSMISGFAQNNRRSQALELFREMLLAGIEP---NGVTV 359
Query: 225 SSRVHGDMKLAKYALDKLLELDP-GMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEE 283
+S + L AL K +EL + +GC ++ V N + ++ K E+E+
Sbjct: 360 TSGISACASLK--ALKKGMELHSVAVKIGCVEDL------LVGNSLI--DMYSKSGELED 409
Query: 284 NMKELGFVLNRSLY 297
+ +L + +Y
Sbjct: 410 ARRVFDMILKKDVY 423
>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
from Arabidopsis thaliana BAC F28A21 gi|T04867 and
contains multiple PPR PF|01535 repeats. EST gb|AI999742
comes from this gene. This gene may be cut off, partial
[Arabidopsis thaliana]
Length = 757
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 167/362 (46%), Gaps = 56/362 (15%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ W ++ C + KD E + EL +Q+ + +I +L +C N L G
Sbjct: 354 VSWTSIIAGCAQNGKDIEAL-ELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHG 412
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ + L+ + VG+ LI++ ++CG+I+ + + F P KN + W +++ HG E
Sbjct: 413 FAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKE 472
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
+ +F+ + +F S L A +GL E ++ F M E Y I+P EHYS MV
Sbjct: 473 VMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMV 532
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DP 247
LGRAG +E + IK + P + +W LL S R+ ++ LA+ A +KL L +P
Sbjct: 533 NLLGRAGKLQEAYDLIKEM-PFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENP 591
Query: 248 GMYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTS 272
G YV GC WI+++N++Y ++ ++
Sbjct: 592 GTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQID 651
Query: 273 EVSDKLAEIEENMKELG------FVLNRSLYQTKMK---------AVALGLISFPHGMPT 317
++++K+ EI + M++ G F L+ Q + + AV GL++ P G P
Sbjct: 652 QITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPL 711
Query: 318 RV 319
+V
Sbjct: 712 QV 713
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 103/259 (39%), Gaps = 42/259 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L ++ ++ + ++I D ++ +L S + +LN+G Y
Sbjct: 218 VSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGY 277
Query: 72 MTKRGLISHPAVGNCLININ-------------------------------SRCGKIDDA 100
+ K+GL+ V + +I++ SR G +D A
Sbjct: 278 VIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKA 337
Query: 101 ----DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+L + T E N +SWT II+ +G EAL+LF++ Q N T S L A
Sbjct: 338 LEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPA 397
Query: 157 YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGK--L 214
+ +G R H+ + S +++ + G + + + ++P K +
Sbjct: 398 CGNIAALGHG-RSTHGFAVRVHLLDNVHVGSALIDMYAKCGRI-NLSQIVFNMMPTKNLV 455
Query: 215 CPLIWRTLLLSSRVHGDMK 233
C W +L+ +HG K
Sbjct: 456 C---WNSLMNGFSMHGKAK 471
>gi|297738941|emb|CBI28186.3| unnamed protein product [Vitis vinifera]
Length = 760
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 129/230 (56%), Gaps = 10/230 (4%)
Query: 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFII 119
I + G + +++ K GL ++P V + L+++ ++ G I ++ F TP KN ++WT II
Sbjct: 467 ISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICESLGVFSETPLKNEVAWTAII 526
Query: 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179
SA HG ++LFKD + + TF + + A G+V Y+LF SM + + I
Sbjct: 527 SAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVITACGRKGMVDTGYQLFNSMVKDHLI 586
Query: 180 EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239
EPS EHYS MV+ LGRAG +E EF+ G +PG + ++LL + R+HG++ +AK
Sbjct: 587 EPSPEHYSSMVDMLGRAGRLKEAEEFV-GQIPGGAGLSVLQSLLGACRIHGNVDMAKRVA 645
Query: 240 DKLLELDPGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELG 289
D L+E++P M G ++ + N E E K+A+I + M+E G
Sbjct: 646 DDLIEMEP-MGSGSYVLMSNLYAEKGEWE--------KVAKIRKGMRERG 686
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D S +++C + +G Q + K G +H V N LI+ S+C I+DA L
Sbjct: 253 LDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLV 312
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F+S ++N +SWT +IS +A LF + + N TF + A + LV
Sbjct: 313 FESIIDRNVVSWTTMISIS-----EEDATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLV 367
Query: 164 GEA 166
E
Sbjct: 368 EEG 370
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 38 QLCCGF---IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC 94
QL GF ID ++ +L +C L G Q A+ G ISH V N L+N+ +
Sbjct: 69 QLQWGFVGNIDQVTVAIVLKACCGDSKL--GCQIHAFAISSGFISHVTVPNSLMNMYCKA 126
Query: 95 GKIDDADLAFKSTPEKNSLSWTFIISA 121
G D A + F++ + +SW ++S
Sbjct: 127 GLFDRALVVFENLNNPDIVSWNTVLSG 153
>gi|91805879|gb|ABE65668.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 520
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 127/240 (52%), Gaps = 9/240 (3%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
+ ++ +C VG Q A + K G+ +H +G+ L+++ ++CG I+DA F
Sbjct: 275 TFASVIGACAVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQM 334
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
EKN SWT +I +G+P EAL+LF + N TF AL A + GLV + Y
Sbjct: 335 QEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGY 394
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
+F SM+ Y ++P EHY+ +V+ +GRAG + EF + + P + IW LL S
Sbjct: 395 EIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAM-PERPDSDIWAALLSSCN 453
Query: 228 VHGDMKLAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKE 287
+HG+++LA A +L +L+ G ++ + N + SN++ D +++I E MK
Sbjct: 454 LHGNVELASIAASELFKLNADKRPGAYLALSNV---YASNDKW-----DNVSKIREVMKR 505
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 152/310 (49%), Gaps = 37/310 (11%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
E+ W ++ K+ E+ +R+ + D ++ +L++C + L +G + +
Sbjct: 215 EVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICS 274
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ RG+ ++ N +I++ ++ G I A F+ E+N ++WT II+ HGH +E
Sbjct: 275 YVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAE 334
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
AL +F N TF + L A + +G V RLF SM Y I P+ EHY M+
Sbjct: 335 ALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMI 394
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG E E IK + P K IW +LL +S VH D++L + AL +L++L+P
Sbjct: 395 DLLGRAGKLREADEVIKSM-PFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNS 453
Query: 248 GMY---------VGCW-----------------------IEIQNKIYEFVSNEELTSEVS 275
G Y +G W IE++N++Y+F+S +LT
Sbjct: 454 GNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVYKFISG-DLTHPQV 512
Query: 276 DKLAEIEENM 285
+++ EI + M
Sbjct: 513 ERIHEILQEM 522
>gi|297836184|ref|XP_002885974.1| hypothetical protein ARALYDRAFT_480424 [Arabidopsis lyrata subsp.
lyrata]
gi|297331814|gb|EFH62233.1| hypothetical protein ARALYDRAFT_480424 [Arabidopsis lyrata subsp.
lyrata]
Length = 548
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 156/342 (45%), Gaps = 35/342 (10%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+ SC N L + + + P + N +I++ C + DA F +K+
Sbjct: 211 LFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECRSVTDAKRVFDHMVDKD 270
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
SW ++ A ++G +AL LF++ + N TF + A A +G + EA+ F
Sbjct: 271 MDSWHLMMRAYSDNGMGDDALHLFEEMTKQGLKPNEETFLTVFLACATVGGIKEAFLHFD 330
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231
SM + I P EHY ++ LG+ G E ++I+ + P + W + +R+HGD
Sbjct: 331 SMRNEHGISPKTEHYLGVLGVLGKCGHLIEAEQYIRDL-PFEPTADFWEAMRNYARLHGD 389
Query: 232 MKLAKYALDKLLELDPGMYVGCWIEI--------------QNKIYEFVS----NEELTSE 273
+ L Y + +++LD V I +++I EF + +E
Sbjct: 390 IDLEDYMEELMVDLDSSKAVTNKIPTPQPKSFKETNMVTSKSRILEFRNLTFYKDEAKEM 449
Query: 274 VSDK-----------LAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKS 322
+ K L +I++ KE LY ++ A+A G+I P +IK+
Sbjct: 450 AAKKGVVYVPDTRFVLHDIDQEAKEQAL-----LYHSERLAIAYGIICTPPRKTLTIIKN 504
Query: 323 VGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+ +CG H+ + MS II REL+V+D FHHFKDGKCSC D
Sbjct: 505 LRVCGDCHNFIKIMSKIIGRELIVRDNKRFHHFKDGKCSCGD 546
>gi|225445472|ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
mitochondrial [Vitis vinifera]
Length = 773
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 137/247 (55%), Gaps = 12/247 (4%)
Query: 45 DSYSICDILNSCLNP--ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
+ ++ +L+S + I + G + +++ K GL ++P V + L+++ ++ G I ++
Sbjct: 473 NEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICESLG 532
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F TP KN ++WT IISA HG ++LFKD + + TF + + A G+
Sbjct: 533 VFSETPLKNEVAWTAIISAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVITACGRKGM 592
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V Y+LF SM + + IEPS EHYS MV+ LGRAG +E EF+ G +PG + ++L
Sbjct: 593 VDTGYQLFNSMVKDHLIEPSPEHYSSMVDMLGRAGRLKEAEEFV-GQIPGGAGLSVLQSL 651
Query: 223 LLSSRVHGDMKLAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIE 282
L + R+HG++ +AK D L+E++P M G ++ + N E E K+A+I
Sbjct: 652 LGACRIHGNVDMAKRVADDLIEMEP-MGSGSYVLMSNLYAEKGEWE--------KVAKIR 702
Query: 283 ENMKELG 289
+ M+E G
Sbjct: 703 KGMRERG 709
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+D S +++C + +G Q + K G +H V N LI+ S+C I+DA L
Sbjct: 276 LDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLV 335
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F+S ++N +SWT +IS +A LF + + N TF + A + LV
Sbjct: 336 FESIIDRNVVSWTTMISIS-----EEDATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLV 390
Query: 164 GEA 166
E
Sbjct: 391 EEG 393
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 38 QLCCGF---IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC 94
QL GF ID ++ +L +C L G Q A+ G ISH V N L+N+ +
Sbjct: 69 QLQWGFVGNIDQVTVAIVLKACCGDSKL--GCQIHAFAISSGFISHVTVPNSLMNMYCKA 126
Query: 95 GKIDDADLAFKSTPEKNSLSWTFIISA 121
G D A + F++ + +SW ++S
Sbjct: 127 GLFDRALVVFENLNNPDIVSWNTVLSG 153
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 4/146 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L ++ D R+ D+ + +L C + G Q +
Sbjct: 145 VSWNTVLSGFQRSDD---ALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQLHSR 201
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS-E 130
+ K GL VGN LI + SRC ++ +A F K+ +SW ++S G+ E
Sbjct: 202 ILKCGLDCEVFVGNALITMYSRCCRLVEARRVFDEMRNKDLVSWNAMLSGYAQEGNSGLE 261
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKA 156
A+ +F + ++ +F A+ A
Sbjct: 262 AILVFLEMLKEGMKLDHVSFTGAISA 287
>gi|42562381|ref|NP_174190.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806502|sp|Q1PFQ9.2|PPR62_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g28690, mitochondrial; Flags: Precursor
gi|332192893|gb|AEE31014.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 520
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 127/240 (52%), Gaps = 9/240 (3%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
+ ++ +C VG Q A + K G+ +H +G+ L+++ ++CG I+DA F
Sbjct: 275 TFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQM 334
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
EKN SWT +I +G+P EAL+LF + N TF AL A + GLV + Y
Sbjct: 335 QEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGY 394
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
+F SM+ Y ++P EHY+ +V+ +GRAG + EF + + P + IW LL S
Sbjct: 395 EIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAM-PERPDSDIWAALLSSCN 453
Query: 228 VHGDMKLAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKE 287
+HG+++LA A +L +L+ G ++ + N + SN++ D +++I E MK
Sbjct: 454 LHGNVELASIAASELFKLNADKRPGAYLALSNV---YASNDKW-----DNVSKIREVMKR 505
>gi|116830928|gb|ABK28420.1| unknown [Arabidopsis thaliana]
Length = 521
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 127/240 (52%), Gaps = 9/240 (3%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
+ ++ +C VG Q A + K G+ +H +G+ L+++ ++CG I+DA F
Sbjct: 275 TFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQM 334
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
EKN SWT +I +G+P EAL+LF + N TF AL A + GLV + Y
Sbjct: 335 QEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGY 394
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
+F SM+ Y ++P EHY+ +V+ +GRAG + EF + + P + IW LL S
Sbjct: 395 EIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAM-PERPDSDIWAALLSSCN 453
Query: 228 VHGDMKLAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKE 287
+HG+++LA A +L +L+ G ++ + N + SN++ D +++I E MK
Sbjct: 454 LHGNVELASIAASELFKLNADKRPGAYLALSNV---YASNDKW-----DNVSKIREVMKR 505
>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Brachypodium distachyon]
Length = 652
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 102/388 (26%), Positives = 174/388 (44%), Gaps = 60/388 (15%)
Query: 32 ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91
E+ +R+ ID S+ +++C + Q G + VG+ L+++
Sbjct: 264 EVFDRMTALGIGIDEVSLTGAISACAQLGAVKRAAWVQEIAEMNGFGMNVVVGSGLVDMY 323
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY-TSMNPTTF 150
++CG ID+A F EKN +++ ++ +HG EA+ LFKD R + N TF
Sbjct: 324 AKCGLIDEACKVFDGMQEKNVYTYSSMVVGLASHGRAREAIALFKDMVRRADVAPNHVTF 383
Query: 151 RSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIV 210
L A + G+V + F M++ Y I PS +HY+ MV+ LGRAG+ +E L+ ++ +
Sbjct: 384 IGVLTACSHAGMVTDGRYYFAQMKDKYGILPSADHYTCMVDLLGRAGLVDEALDLVRSMT 443
Query: 211 PGKLCPL--IWRTLLLSSRVHGDMKLAKYALDKLLELDP---GMYV---------GCWIE 256
+ P +W LL + R+HG ++AK A + L +L+P G YV G W E
Sbjct: 444 ---VEPHGGVWGALLGACRIHGKTEVAKVAAEHLFKLEPEGIGNYVLLSNTLAAAGKWDE 500
Query: 257 IQNK------------------------IYEFVSNEE---LTSEVSDKLAEIEENMKELG 289
+ +++F + + T E+ L E+ +K G
Sbjct: 501 VSKVRKVMRSRRLKKVPAVSWFEGRDGLVHQFFAGDNSHPRTREIKKALLELVAKLKHAG 560
Query: 290 FV--LNRSLYQTKMKAVALGLISFPHGM-------------PTRVIKSVGMCGYSHSACR 334
+V L+ +Y + L+ + R++K++ +C H R
Sbjct: 561 YVPILSSIVYDVSNEEKERLLMGHSEKLALLFGLLTLGSRCTIRIVKNLRICDDCHLFIR 620
Query: 335 FMSTIIERELVVKDPGSFHHFKDGKCSC 362
+S E++V+D FHHFKDG+CSC
Sbjct: 621 LVSRFEPVEIIVRDNMRFHHFKDGECSC 648
>gi|225443851|ref|XP_002267303.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial [Vitis vinifera]
Length = 533
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 129/247 (52%), Gaps = 18/247 (7%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
+ ++ +C + +G Q Q+ + K + +G+ LI++ S+CG+I+DA F
Sbjct: 284 TFASVIGACSVLTVFEIGQQVQSQLVKMNFYNDIKMGSALIDMYSKCGRIEDARRVFDHM 343
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWR-YTSMNPTTFRSALKAYALMGLVGEA 166
PEKN SWT +I +G+ +EAL+LF Q + N TF SAL A GLV +
Sbjct: 344 PEKNVFSWTSMIDGYGKNGNSNEALELFSRMQIECHVKPNYVTFLSALSACGHAGLVAKG 403
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226
+ + SME Y ++P EHY+ MV+ LGRAG ++ EF+ + P K +W LL S
Sbjct: 404 WTILESMERDYLLKPRMEHYACMVDLLGRAGSLQQAWEFVMRM-PEKPGSDVWAALLSSC 462
Query: 227 RVHGDMKLAKYALDKLLELD----PGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIE 282
++HGD+++A A ++ +L+ PG YV +SN + D ++E+
Sbjct: 463 QLHGDVEMASMAAHEIFKLNSDGRPGAYVA------------LSNALAAAGKWDSVSEVR 510
Query: 283 ENMKELG 289
+ MK G
Sbjct: 511 QLMKVRG 517
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 150/280 (53%), Gaps = 6/280 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ ++ ++ EL E++Q D+ ++ +L++C + ++ G + +
Sbjct: 243 VSWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRF 302
Query: 72 MTKRGLISHPA--VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
++ R P+ +GN LI++ ++CG + A F +KN +W II HGH +
Sbjct: 303 LSGRFSRIGPSTVLGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVT 362
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
EA+D+F+ + TF + L A + G+V + + F M++ Y IEP+ +HY M
Sbjct: 363 EAIDVFQKMLQGNVKPDEITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPNVKHYGCM 422
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249
V+ L RAG+ +E EFI G + + P+IWRTLL + R+HG+++LA++A +LL+
Sbjct: 423 VDMLSRAGLLKEAFEFI-GTMKIEPNPVIWRTLLGACRIHGELELAEHANQELLKARSDA 481
Query: 250 YVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELG 289
G ++ + N IY V E L SE KL + KE G
Sbjct: 482 S-GDFVLLSN-IYASV-GEWLGSENMRKLMDDSGVNKEAG 518
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 10/163 (6%)
Query: 14 WNLLLKACIKA---KDYEMVHELLERIQLCCGF---IDSYSICDILNSCLNPILLNVGTQ 67
+N L++ + +D ++ + R CG D + +L +C G Q
Sbjct: 76 YNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGASETGAQ 135
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
A++ K G S V N LI +++ CG + A F +++++W+ +IS G
Sbjct: 136 VHAHVVKAGCESDAFVRNALIGMHATCGDLGAAAALFDGEAREDAVAWSAMISGFARRGD 195
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF 170
A +LF + + + ++ + AYA +G + A LF
Sbjct: 196 IGAARELFDESPVK----DLVSWNVMITAYAKLGDMAPARELF 234
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 5/162 (3%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I ++ G + A F P+++ +SW +IS V G +A++LF+ Q
Sbjct: 215 NVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQAMGEK 274
Query: 145 MNPTTFRSALKAYALMGLVGEAYRL--FLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV 202
+ T S L A A G + RL FLS I PS + +++ + G
Sbjct: 275 PDTVTMLSLLSACADSGDMDAGRRLHRFLS-GRFSRIGPSTVLGNALIDMYAKCGSMTSA 333
Query: 203 LEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
LE + + W +++ +HG + A K+L+
Sbjct: 334 LEVFWLMQDKNVS--TWNSIIGGLALHGHVTEAIDVFQKMLQ 373
>gi|6691205|gb|AAF24543.1|AC007508_6 F1K23.11 [Arabidopsis thaliana]
Length = 841
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 9/224 (4%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
VG Q A + K G+ +H +G+ L+++ ++CG I+DA F EKN SWT +I
Sbjct: 612 VGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYG 671
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
+G+P EAL+LF + N TF AL A + GLV + Y +F SM+ Y ++P
Sbjct: 672 KNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGYEIFESMQRDYSMKPKM 731
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
EHY+ +V+ +GRAG + EF + + P + IW LL S +HG+++LA A +L
Sbjct: 732 EHYACIVDLMGRAGDLNKAFEFARAM-PERPDSDIWAALLSSCNLHGNVELASIAASELF 790
Query: 244 ELDPGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKE 287
+L+ G ++ + N + SN++ D +++I E MK
Sbjct: 791 KLNADKRPGAYLALSNV---YASNDKW-----DNVSKIREVMKR 826
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 124/243 (51%), Gaps = 4/243 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+PWN ++ + A + L +Q D ++ L++C L+VG Y
Sbjct: 306 VPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHY 365
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K L + A+G LI++ ++CGKI A F+ P +NSL+WT IIS HG+ A
Sbjct: 366 IEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGA 425
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F + + TF L A GLV E + F M +++ P +HYS MV+
Sbjct: 426 IAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVD 485
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG+ EE E IK + P + ++W L + R+HG++ + + A KLL++DP G
Sbjct: 486 LLGRAGLLEEAEELIKSM-PIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSG 544
Query: 249 MYV 251
+YV
Sbjct: 545 IYV 547
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN+ ++ + +++ L +R+ C G D+Y+ + +C L+ +G++ ++
Sbjct: 74 WNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHV 133
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
G S V N +I++ CG +D A F + ++ +SW +I+ V G EAL
Sbjct: 134 LHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEAL 193
Query: 133 DLFKD 137
+ +++
Sbjct: 194 NFYRE 198
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ +++SC L++G ++ Y+ + GL + N L+++ +CG ++ A F
Sbjct: 207 DEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLF 266
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
S K +SWT ++ G A LF + + + + + Y
Sbjct: 267 DSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDE----MPDKDVVPWNAMIGGYVHANRGK 322
Query: 165 EAYRLFLSMEEVYHIEPSE 183
EA LF M+ + +I P E
Sbjct: 323 EALALFNEMQAM-NINPDE 340
>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
Length = 742
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 152/332 (45%), Gaps = 54/332 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +++ +++SC N L G Q GL+ + V N L+ + +CG I+DA F
Sbjct: 378 DDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLF 437
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ +SWT +++ G E +DLF+ + TF L A + GLV
Sbjct: 438 DEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVE 497
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ F SM++ + I P ++HY+ M++ R+G F+E EFIK + P W TLL
Sbjct: 498 KGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQM-PHSPDAFGWATLLS 556
Query: 225 SSRVHGDMKLAKYALDKLLELD---PGMYV------------------------------ 251
S R+ G+M++ K+A + LLE D P YV
Sbjct: 557 SCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKE 616
Query: 252 -GC-WIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS----------- 295
GC WI+ +NK++ F ++++ +S + +KL + M E G+ + S
Sbjct: 617 PGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADK 676
Query: 296 ----LYQTKMKAVALGLISFPHGMPTRVIKSV 323
+ ++ A+A GLI P MP R++K++
Sbjct: 677 VHMISHHSEKLAIAFGLIFVPQEMPIRIVKNL 708
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
ID Y+ IL +C L G Q AY+T+ + VG+ L+++ S+C I A+
Sbjct: 276 IDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAV 335
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ 139
F+ +N +SWT +I + EA+ F + Q
Sbjct: 336 FRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQ 371
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N LI RC I+DA F+ +++S++WT +++ +G EALD+F+ +
Sbjct: 216 NTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVG 275
Query: 145 MNPTTFRSALKAYALMGLVGEAYRL 169
++ TF S L A + + E ++
Sbjct: 276 IDQYTFGSILTACGALAALEEGKQI 300
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,764,850,011
Number of Sequences: 23463169
Number of extensions: 228542496
Number of successful extensions: 593022
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6084
Number of HSP's successfully gapped in prelim test: 1832
Number of HSP's that attempted gapping in prelim test: 553168
Number of HSP's gapped (non-prelim): 28541
length of query: 373
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 229
effective length of database: 8,980,499,031
effective search space: 2056534278099
effective search space used: 2056534278099
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)