BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047393
         (373 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Q7D|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
           56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
 pdb|2Q7D|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
           56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
          Length = 346

 Score = 29.6 bits (65), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 14/102 (13%)

Query: 69  QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
           +AYM    + S P      + + S CG  DD         EKN L++ FI   RV HG  
Sbjct: 128 EAYMEDDRICSPP-----FMELTSLCG--DDTMRLL----EKNGLTFPFICKTRVAHGTN 176

Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALM---GLVGEAY 167
           S  + +  +++       P   ++ +   A++    +VGE+Y
Sbjct: 177 SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESY 218


>pdb|2QB5|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
           56-Kinase (Itpk1) In Complex With Adp And Mn2+
 pdb|2QB5|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
           56-Kinase (Itpk1) In Complex With Adp And Mn2+
          Length = 347

 Score = 29.6 bits (65), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 14/102 (13%)

Query: 69  QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
           +AYM    + S P      + + S CG  DD         EKN L++ FI   RV HG  
Sbjct: 129 EAYMEDDRICSPP-----FMELTSLCG--DDTMRLL----EKNGLTFPFICKTRVAHGTN 177

Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALM---GLVGEAY 167
           S  + +  +++       P   ++ +   A++    +VGE+Y
Sbjct: 178 SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESY 219


>pdb|2JVB|A Chain A, Solution Structure Of Catalytic Domain Of Ydcp2
          Length = 146

 Score = 28.9 bits (63), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 11/121 (9%)

Query: 52  ILNSCLNPILLNVGTQAQAYMTKRGLISHPA--VGNCLININSRCG-----KIDDADLAF 104
           I N  L+ ILL  GT++ ++   RG IS     +  C+  +    G      IDD     
Sbjct: 11  IFNENLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIE 70

Query: 105 KSTPEKNSLSWTFIIS--ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
           ++   KN     F+IS  + V +  P    ++ K + + +  ++ T ++S +K Y +  +
Sbjct: 71  RNIQGKNYK--IFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSNIKYYLINSM 128

Query: 163 V 163
           +
Sbjct: 129 M 129


>pdb|1K24|A Chain A, Crystal Structure Of The Opca Outer Membrane
           AdhesinINVASIN FROM Neisseria Meningitidis
 pdb|2VDF|A Chain A, Structure Of The Opca Adhesion From Neisseria Meningitidis
           Determined By Crystallization From The Cubic Mesophase
          Length = 253

 Score = 28.1 bits (61), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 234 LAKYALDKLLELDPGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVL 292
           LAK   D L +L  G Y+  W E++   ++  S  +L + V++   +I +     GF L
Sbjct: 138 LAKVHADLLSQLGNGWYINPWSEVK---FDLNSRYKLNTGVTNLKKDINQKTNGWGFGL 193


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,154,924
Number of Sequences: 62578
Number of extensions: 437496
Number of successful extensions: 1014
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1014
Number of HSP's gapped (non-prelim): 5
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)