BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047393
(373 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 130/412 (31%), Positives = 197/412 (47%), Gaps = 58/412 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N L + ++E +LL I + +++ +L+ N + G Q +
Sbjct: 440 VSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQ 499
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL + V N LI++ S+CG ID A F +N +SWT +I+ HG
Sbjct: 500 VVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRV 559
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+ F N T+ + L A + +GLV E +R F SM E + I+P EHY+ MV+
Sbjct: 560 LETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVD 619
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD---PG 248
L RAG+ + EFI +P + L+WRT L + RVH + +L K A K+LELD P
Sbjct: 620 LLCRAGLLTDAFEFIN-TMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPA 678
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEEL---TSE 273
Y+ GC WIE+ +KI++F + +
Sbjct: 679 AYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQ 738
Query: 274 VSDKLAEIEENMKELGFVLN------------------RSLYQTKMK-AVALGLISFPHG 314
+ D+L + +K G+V + R LYQ K AVA GLIS
Sbjct: 739 IYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKS 798
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P RV K++ +CG H+A +++ST+ RE+V++D FHHFKDGKCSC D +
Sbjct: 799 RPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+ ++ +C N VG Q KRGL S+ +V N +I++ + +++DA AF
Sbjct: 372 NHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAF 431
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
+S EKN +S+ + + + +A L + R ++ TF S L A +G +
Sbjct: 432 ESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSI 490
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 12 IPWNLLLKACIKAK-DYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQ 69
+ W L++ C++ E + L+ + GF D +++ + ++C L++G Q
Sbjct: 235 VTWTLMITRCMQMGFPREAIRFFLDMV--LSGFESDKFTLSSVFSACAELENLSLGKQLH 292
Query: 70 AYMTKRGLISHPAVGNCLININSRC---GKIDDADLAFKSTPEKNSLSWTFIISARV-NH 125
++ + GL+ V L+++ ++C G +DD F + + +SWT +I+ + N
Sbjct: 293 SWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNC 350
Query: 126 GHPSEALDLFKDKQWR-YTSMNPTTFRSALKA 156
+EA++LF + + + N TF SA KA
Sbjct: 351 NLATEAINLFSEMITQGHVEPNHFTFSSAFKA 382
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 12 IPWNLLLKACI--KAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQA 68
+ W+ ++ AC ++ + + +E ++L G + + Y ++ +C N + VG
Sbjct: 132 VSWSAMM-ACYGNNGRELDAIKVFVEFLEL--GLVPNDYCYTAVIRACSNSDFVGVGRVT 188
Query: 69 QAYMTKRG-LISHPAVGNCLININSRC-GKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
++ K G S VG LI++ + ++A F E N ++WT +I+ + G
Sbjct: 189 LGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMG 248
Query: 127 HPSEALDLFKD 137
P EA+ F D
Sbjct: 249 FPREAIRFFLD 259
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+DS + +L SC+ +G A + + + + N LI++ S+ G A+
Sbjct: 60 MDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDV 119
Query: 104 FKST---PEKNSLSWTFIISARVNHGHPSEALDLF 135
F++ +++ +SW+ +++ N+G +A+ +F
Sbjct: 120 FETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVF 154
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 189 bits (479), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 126/411 (30%), Positives = 195/411 (47%), Gaps = 58/411 (14%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDIL--NSCLNPILLNVGTQA 68
++ W ++ CI+ + E + +++L D ++I + +SCL L G Q
Sbjct: 583 DVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTA--LEQGRQI 640
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
A K + P VG L+++ ++CG IDDA FK N +W ++ HG
Sbjct: 641 HANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEG 700
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
E L LFK + + TF L A + GLV EAY+ SM Y I+P EHYS
Sbjct: 701 KETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSC 760
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP- 247
+ +ALGRAG+ ++ I+ + + ++RTLL + RV GD + K KLLEL+P
Sbjct: 761 LADALGRAGLVKQAENLIESM-SMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPL 819
Query: 248 ---------GMYVGC-------------------------WIEIQNKIYEFVSNE---EL 270
MY WIE++NKI+ FV ++
Sbjct: 820 DSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQ 879
Query: 271 TSEVSDKLAEIEENMKELGFV--------------LNRSLYQTKMK-AVALGLISFPHGM 315
T + K+ ++ ++K+ G+V R+LY K AVA GL+S P
Sbjct: 880 TELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPST 939
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P RVIK++ +CG H+A ++++ + RE+V++D FH FKDG CSC D +
Sbjct: 940 PIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 2/147 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ ++ D +L + D +++ + +C +N G Q AY
Sbjct: 483 VAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAY 542
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K G V + ++++ +CG + A AF S P + ++WT +IS + +G A
Sbjct: 543 AIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERA 602
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
+F Q R + P F A A A
Sbjct: 603 FHVF--SQMRLMGVLPDEFTIATLAKA 627
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 7/142 (4%)
Query: 12 IPWNLLLKACIKAKD--YEMVHE--LLERI-QLCCGFIDSYSICDILNSCLNPILLNVGT 66
+ WN +L A ++ + E + + LL RI + + ++ +L CL+ +
Sbjct: 106 VSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASE 165
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
Y K GL V L+NI + GK+ + + F+ P ++ + W ++ A + G
Sbjct: 166 SFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMG 225
Query: 127 HPSEALDLFKDKQWRYTSMNPT 148
EA+DL + + +NP
Sbjct: 226 FKEEAIDL--SSAFHSSGLNPN 245
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L +G Q K GL V N LIN+ + K A F + E++ +SW +I+
Sbjct: 331 LALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAG 390
Query: 122 RVNHGHPSEALDLF 135
+G EA+ LF
Sbjct: 391 IAQNGLEVEAVCLF 404
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 188 bits (478), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 185/376 (49%), Gaps = 55/376 (14%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
++ YS +++ C N LL +G Q K S VG+ L+++ S+CG + A
Sbjct: 215 VNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQV 274
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F P KN W ++ A H H + ++LFK + N TF + L A + GLV
Sbjct: 275 FNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLV 334
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
E F M+E IEP+++HY+ +V+ LGRAG +E LE I + P +W LL
Sbjct: 335 DEGRYYFDQMKES-RIEPTDKHYASLVDMLGRAGRLQEALEVITNM-PIDPTESVWGALL 392
Query: 224 LSSRVHGDMKLAKYALDKLLELDP---GMYVG---------------------------- 252
S VH + +LA +A DK+ EL P GM++
Sbjct: 393 TSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKK 452
Query: 253 ----CWIEIQNKIYEFVSNE---ELTSEVSDKLAEIEENMKELGFVLNRSL--------- 296
W+E +NK++ F + E E + E+ +KLAE+ E M++ G++ + S
Sbjct: 453 ETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDE 512
Query: 297 ------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
Y ++ A+A GLI+FP P RV+K++ +CG H+A +FMS R ++V+D
Sbjct: 513 KNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNN 572
Query: 351 SFHHFKDGKCSCKDAY 366
FH F+DGKCSC D +
Sbjct: 573 RFHRFEDGKCSCNDYW 588
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 50 CDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE 109
C IL+ C ++G K G + VG+ L+++ ++CG+I A F P+
Sbjct: 126 CAILSRC------DIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQ 179
Query: 110 KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
+N ++W+ ++ G EAL LFK+ + ++N +F S + A
Sbjct: 180 RNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCA 228
Score = 35.8 bits (81), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%)
Query: 49 ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP 108
ICD+L S G Q Y+ K GL P V N LIN S+ D+ AF+ +P
Sbjct: 18 ICDLLLSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSP 77
Query: 109 EKNSL 113
+K+S
Sbjct: 78 QKSST 82
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 184 bits (468), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 185/378 (48%), Gaps = 54/378 (14%)
Query: 42 GFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD 101
G ++ S L++C + + L +G Q + K G + VGN L+ + +CG I++A+
Sbjct: 405 GRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAN 464
Query: 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
FK K+ +SW +I+ HG AL F+ + + T + L A + G
Sbjct: 465 DLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTG 524
Query: 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221
LV + + F +M + Y + P+ +HY+ MV+ LGRAG+ E+ +K + P + IW T
Sbjct: 525 LVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNM-PFEPDAAIWGT 583
Query: 222 LLLSSRVHGDMKLAKYALDKLLELDP---GMYV--------------------------- 251
LL +SRVHG+ +LA+ A DK+ ++P GMYV
Sbjct: 584 LLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGV 643
Query: 252 -----GCWIEIQNKIYEFVSNEELTSEVSDKLAEIEE---NMKELGFVLNRSL------- 296
WIEIQNK + F +E E + A +EE MK+ G+V S+
Sbjct: 644 KKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEE 703
Query: 297 --------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKD 348
Y ++ AVA G++ G P RVIK++ +C H+A ++M+ I R ++++D
Sbjct: 704 EEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRD 763
Query: 349 PGSFHHFKDGKCSCKDAY 366
FHHFKDG CSC D +
Sbjct: 764 NNRFHHFKDGSCSCGDYW 781
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I ++CGKI +A F P+++ +SW +I+ GH EAL LF +
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGR 406
Query: 145 MNPTTFRSALKAYA 158
+N ++F SAL A
Sbjct: 407 LNRSSFSSALSTCA 420
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 44/200 (22%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQ----- 139
N +++ ++ G +DDA F PEKN +SW ++SA V + EA LFK ++
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALV 220
Query: 140 -WR------------------YTSMN---PTTFRSALKAYALMGLVGEAYRLF--LSMEE 175
W + SMN ++ + + YA G + EA +LF +++
Sbjct: 221 SWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQD 280
Query: 176 VYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD-MKL 234
V+ ++ MV + M EE E + P + + W +L+ V G+ M++
Sbjct: 281 VF-------TWTAMVSGYIQNRMVEEARELFDKM-PER-NEVSWNA-MLAGYVQGERMEM 330
Query: 235 AKYALDKLLELDPGMYVGCW 254
AK +L ++ P V W
Sbjct: 331 AK----ELFDVMPCRNVSTW 346
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 99/259 (38%), Gaps = 34/259 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERI---------QLCCGFI------DSYSICDIL--- 53
+ WN+++K ++ ++ EL E + + G+ D+ S+ D +
Sbjct: 127 VSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK 186
Query: 54 -----NSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP 108
N+ L+ + N + + K NCL+ + KI +A F S
Sbjct: 187 NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMN 246
Query: 109 EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYR 168
++ +SW II+ G EA LF + + T+ + + Y +V EA
Sbjct: 247 VRDVVSWNTIITGYAQSGKIDEARQLFDES----PVQDVFTWTAMVSGYIQNRMVEEARE 302
Query: 169 LFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRV 228
LF M E +E ++ M+ + E E ++P + W T++
Sbjct: 303 LFDKMP-----ERNEVSWNAMLAGYVQGERMEMAKELFD-VMPCRNVS-TWNTMITGYAQ 355
Query: 229 HGDMKLAKYALDKLLELDP 247
G + AK DK+ + DP
Sbjct: 356 CGKISEAKNLFDKMPKRDP 374
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N +I+ R G+ + A F PE++ +SW +I V + + +A +LF+ R
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPER--- 155
Query: 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175
+ ++ + L YA G V +A +F M E
Sbjct: 156 -DVCSWNTMLSGYAQNGCVDDARSVFDRMPE 185
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 181 bits (460), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 117/409 (28%), Positives = 199/409 (48%), Gaps = 56/409 (13%)
Query: 12 IPWNLLLKACIK-AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
+ W ++ C + KD E + EL +Q+ + +I +L +C N L G
Sbjct: 354 VSWTSIIAGCAQNGKDIEAL-ELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHG 412
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ + L+ + VG+ LI++ ++CG+I+ + + F P KN + W +++ HG E
Sbjct: 413 FAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKE 472
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
+ +F+ + +F S L A +GL E ++ F M E Y I+P EHYS MV
Sbjct: 473 VMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMV 532
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL---DP 247
LGRAG +E + IK + P + +W LL S R+ ++ LA+ A +KL L +P
Sbjct: 533 NLLGRAGKLQEAYDLIKEM-PFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENP 591
Query: 248 GMYV-------------------------------GC-WIEIQNKIYEFVSNEE---LTS 272
G YV GC WI+++N++Y ++ ++
Sbjct: 592 GTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQID 651
Query: 273 EVSDKLAEIEENMKELG------FVLNRSLYQTKMK---------AVALGLISFPHGMPT 317
++++K+ EI + M++ G F L+ Q + + AV GL++ P G P
Sbjct: 652 QITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPL 711
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+VIK++ +CG H+ +F+S+ RE+ ++D FHHFKDG CSC D +
Sbjct: 712 QVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 103/259 (39%), Gaps = 42/259 (16%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L ++ ++ + ++I D ++ +L S + +LN+G Y
Sbjct: 218 VSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGY 277
Query: 72 MTKRGLISHPAVGNCLININ-------------------------------SRCGKIDDA 100
+ K+GL+ V + +I++ SR G +D A
Sbjct: 278 VIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKA 337
Query: 101 ----DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+L + T E N +SWT II+ +G EAL+LF++ Q N T S L A
Sbjct: 338 LEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPA 397
Query: 157 YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGK--L 214
+ +G R H+ + S +++ + G + + + ++P K +
Sbjct: 398 CGNIAALGHG-RSTHGFAVRVHLLDNVHVGSALIDMYAKCGRI-NLSQIVFNMMPTKNLV 455
Query: 215 CPLIWRTLLLSSRVHGDMK 233
C W +L+ +HG K
Sbjct: 456 C---WNSLMNGFSMHGKAK 471
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 181 bits (459), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 188/408 (46%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN L+ ++ + E + R+ ++++ + + + G Q A
Sbjct: 658 IAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAV 717
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+TK G S V N LI++ ++CG I DA+ F KN +SW II+A HG SEA
Sbjct: 718 ITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEA 777
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LD F N T L A + +GLV + F SM Y + P EHY +V+
Sbjct: 778 LDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVD 837
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
L RAG+ EFI+ + P K L+WRTLL + VH +M++ ++A LLEL+P
Sbjct: 838 MLTRAGLLSRAKEFIQEM-PIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSA 896
Query: 249 MYV--------------------------------GCWIEIQNKIYEFV---SNEELTSE 273
YV WIE++N I+ F N L E
Sbjct: 897 TYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADE 956
Query: 274 VSDKLAEIEENMKELGFV------LNRSLYQTKMK---------AVALGLISFPHGMPTR 318
+ + ++ + E+G+V LN ++ K A++ GL+S P +P
Sbjct: 957 IHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPIN 1016
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V+K++ +C H+ +F+S + RE++V+D FHHF+ G CSCKD +
Sbjct: 1017 VMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D + + +++C L G Q A G S N L+ + SRCGKI+++ LAF
Sbjct: 590 DEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAF 649
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ T ++++W ++S G+ EAL +F N TF SA+KA
Sbjct: 650 EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKA 701
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 64/150 (42%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N L+ + E EL +R+ L DS ++ ++ +C L G Q AY
Sbjct: 355 VTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAY 414
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
TK G S+ + L+N+ ++C I+ A F T +N + W ++ A +
Sbjct: 415 TTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNS 474
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+F+ Q N T+ S LK +G
Sbjct: 475 FRIFRQMQIEEIVPNQYTYPSILKTCIRLG 504
Score = 38.9 bits (89), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Query: 52 ILNSCLN-PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK 110
+L +C + +V Q A + +GL V N LI++ SR G +D A F K
Sbjct: 192 VLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK 251
Query: 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ SW +IS + +EA+ LF D P F S L A
Sbjct: 252 DHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSA 297
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 188/377 (49%), Gaps = 57/377 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++I +L++C L +G + YM K GL + N L+++ +RCG++++A F
Sbjct: 221 DGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP--TTFRSALKAYALMGL 162
+KNS+SWT +I +G EA++LFK + + P TF L A + G+
Sbjct: 281 DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYME-STEGLLPCEITFVGILYACSHCGM 339
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V E + F M E Y IEP EH+ MV+ L RAG ++ E+IK + P + +IWRTL
Sbjct: 340 VKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSM-PMQPNVVIWRTL 398
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------------------------- 251
L + VHGD LA++A ++L+L+P G YV
Sbjct: 399 LGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVK 458
Query: 252 ----GCWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVL------------ 292
+E+ N+++EF+ ++ + + KL E+ ++ G+V
Sbjct: 459 KVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEE 518
Query: 293 ---NRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
N +Y ++ A+A LIS P P V+K++ +C H A + +S + RE+VV+D
Sbjct: 519 EKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDR 578
Query: 350 GSFHHFKDGKCSCKDAY 366
FHHFK+G CSC+D +
Sbjct: 579 SRFHHFKNGSCSCQDYW 595
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 110/251 (43%), Gaps = 12/251 (4%)
Query: 6 LISDVEIP-----WNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLN 58
+ S +E P WN L++ + + L +++ G + D+++ ++ +
Sbjct: 75 VFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVS-GLVEPDTHTYPFLIKAVTT 133
Query: 59 PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFI 118
+ +G + + + G S V N L+++ + CG + A F PEK+ ++W +
Sbjct: 134 MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 193
Query: 119 ISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYH 178
I+ +G P EAL L+ + + + T S L A A +G + R+ + M +V
Sbjct: 194 INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV-G 252
Query: 179 IEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYA 238
+ + +++++ R G EE +V + W +L++ V+G K A
Sbjct: 253 LTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKN--SVSWTSLIVGLAVNGFGKEA-IE 309
Query: 239 LDKLLELDPGM 249
L K +E G+
Sbjct: 310 LFKYMESTEGL 320
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 178 bits (451), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 190/377 (50%), Gaps = 58/377 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S ++ +L +C + L G Y+ +RGL S V + L+ + RCGK++ F
Sbjct: 284 NSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVF 343
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+++ +SW +IS+ HG+ +A+ +F++ S P TF S L A + GLV
Sbjct: 344 DRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVE 403
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIV--PGKLCPLIWRTL 222
E RLF +M + I+P EHY+ MV+ LGRA +E + ++ + PG P +W +L
Sbjct: 404 EGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPG---PKVWGSL 460
Query: 223 LLSSRVHGDMKLAKYALDKLLELDP---GMYV---------------------------- 251
L S R+HG+++LA+ A +L L+P G YV
Sbjct: 461 LGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQ 520
Query: 252 ----GCWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS--LYQTKMK 302
CW+E++ K+Y FVS +E L ++ L ++ E+MKE G++ LY+ + +
Sbjct: 521 KLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETE 580
Query: 303 -------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
A+A GLI+ G P R+ K++ +C H +F+S +E+E++V+D
Sbjct: 581 EKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDV 640
Query: 350 GSFHHFKDGKCSCKDAY 366
FH FK+G CSC D +
Sbjct: 641 NRFHRFKNGVCSCGDYW 657
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 19/241 (7%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL----LNVGTQAQ 69
WN L +A A E V L ++ D ++ +L +C+ L G +
Sbjct: 146 WNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIH 205
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
A++T+RG SH + L+++ +R G +D A F P +N +SW+ +I+ +G
Sbjct: 206 AHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAF 265
Query: 130 EALDLFKD--KQWRYTSMNPTTFRSALKAYALM-----GLVGEAYRLFLSMEEVYHIEPS 182
EAL F++ ++ + +S N T S L+A A + G + Y L ++ + +
Sbjct: 266 EALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPV--- 322
Query: 183 EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
S +V GR G E + + + W +L+ S VHG K A +++
Sbjct: 323 ---ISALVTMYGRCGKLEVGQRVFDRMHDRDV--VSWNSLISSYGVHGYGKKAIQIFEEM 377
Query: 243 L 243
L
Sbjct: 378 L 378
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/410 (29%), Positives = 192/410 (46%), Gaps = 56/410 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ A ++ + E L R + + I +L++C L +G A+
Sbjct: 276 VSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAH 335
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + VG+ L+++ +CG I+D++ AF PEKN ++ +I + G A
Sbjct: 336 AVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMA 395
Query: 132 LDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
L LF++ R P TF S L A + G V ++F SM Y IEP EHYS +
Sbjct: 396 LALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCI 455
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
V+ LGRAGM E EFIK + P + +W L + R+HG +L A + L +LDP
Sbjct: 456 VDMLGRAGMVERAYEFIKKM-PIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKD 514
Query: 248 ------------------------------GMYVGC---WIEIQNKIYEFVSNEE---LT 271
G+ G WI ++N+++ F + + L
Sbjct: 515 SGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILN 574
Query: 272 SEVSDKLAEIEENMKELGFV--LNRSLY-------------QTKMKAVALGLISFPHGMP 316
E+ LA++ M+ G+ L SLY ++ A+A GL+S P +P
Sbjct: 575 KEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVP 634
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R+ K++ +CG HS +F+S ++RE++V+D FH FKDG CSCKD +
Sbjct: 635 IRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 12/160 (7%)
Query: 11 EIP------WNLLLKACI-KAKDYEMVHELLE--RIQLCCGFIDSYSICDILNSCLNPIL 61
EIP WN + + + E + +E RI G +S + C LN+C + +
Sbjct: 168 EIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRID---GHPNSITFCAFLNACSDWLH 224
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
LN+G Q + + G + +V N LI+ +C +I +++ F KN++SW +++A
Sbjct: 225 LNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAA 284
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
V + +A L+ + + S L A A M
Sbjct: 285 YVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMA 324
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%)
Query: 81 PAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQW 140
P + N LIN+ S+ + A L + TP +N +SWT +IS +GH S AL F + +
Sbjct: 42 PFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRR 101
Query: 141 RYTSMNPTTFRSALKAYALMGL 162
N TF A KA A + L
Sbjct: 102 EGVVPNDFTFPCAFKAVASLRL 123
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 39/93 (41%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G Q A K G I VG ++ + DDA F PE+N +W IS V
Sbjct: 126 TGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSV 185
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
G P EA++ F + + N TF + L A
Sbjct: 186 TDGRPREAIEAFIEFRRIDGHPNSITFCAFLNA 218
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 192/412 (46%), Gaps = 62/412 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN L+ ++ Y L ++ + + ++ +C + L++G Q Y
Sbjct: 309 ISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGY 368
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + G S+ + + L+++ S+CG I A F + +SWT II HGH EA
Sbjct: 369 VLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEA 428
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF++ + + N F + L A + +GLV EA+ F SM +VY + EHY+ + +
Sbjct: 429 VSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVAD 488
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLC--PL--IWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
LGRAG EE FI K+C P +W TLL S VH +++LA+ +K+ +D
Sbjct: 489 LLGRAGKLEEAYNFI-----SKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDS 543
Query: 248 ---GMYV-------------------------------GC-WIEIQNKIYEFVSNEE--- 269
G YV C WIE++NK + FVS +
Sbjct: 544 ENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHP 603
Query: 270 LTSEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHG 314
++++ L + E M++ G+V + S ++ AVA G+I+ G
Sbjct: 604 SMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPG 663
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
RV K++ +C H A +F+S I ERE++V+D FHHF G CSC D +
Sbjct: 664 TTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/147 (19%), Positives = 69/147 (46%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N ++ ++ YE ++ + DS+++ +L + + G + Y
Sbjct: 208 VSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGY 267
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ ++G+ S +G+ L+++ ++ +I+D++ F ++ +SW +++ V +G +EA
Sbjct: 268 VIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEA 327
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYA 158
L LF+ F S + A A
Sbjct: 328 LRLFRQMVTAKVKPGAVAFSSVIPACA 354
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/416 (29%), Positives = 197/416 (47%), Gaps = 57/416 (13%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDS-YSICDILNSCLNPILLN 63
+L S ++ WN L+ + E EL + + L GF S +S + +C + L
Sbjct: 221 ALESRNDVSWNALIAGHARRSGTEKALELFQGM-LRDGFRPSHFSYASLFGACSSTGFLE 279
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
G AYM K G GN L+++ ++ G I DA F +++ +SW +++A
Sbjct: 280 QGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYA 339
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
HG EA+ F++ + N +F S L A + GL+ E + + M++ I P
Sbjct: 340 QHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEA 398
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
HY +V+ LGRAG L FI+ + P + IW+ LL + R+H + +L YA + +
Sbjct: 399 WHYVTVVDLLGRAGDLNRALRFIEEM-PIEPTAAIWKALLNACRMHKNTELGAYAAEHVF 457
Query: 244 EL---DPGMYV-------------------------------GC-WIEIQNKIYEFVSNE 268
EL DPG +V C W+EI+N I+ FV+N+
Sbjct: 458 ELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVAND 517
Query: 269 EL---TSEVSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLIS 310
E E++ K E+ +KELG+V + S Y ++ A+A L++
Sbjct: 518 ERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLN 577
Query: 311 FPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P G + K++ +CG H+A + S ++ RE++V+D FHHFKDG CSCKD +
Sbjct: 578 TPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L C LL G A++ + +GN L+N+ ++CG +++A F+ P+++
Sbjct: 66 LLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRD 125
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYT-SMNPTTFRSALKAYA 158
++WT +IS H P +AL LF ++ R+ S N T S +KA A
Sbjct: 126 FVTWTTLISGYSQHDRPCDAL-LFFNQMLRFGYSPNEFTLSSVIKAAA 172
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Q + K G S+ VG+ L+++ +R G +DDA L F + +N +SW +I+
Sbjct: 180 GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHAR 239
Query: 125 HGHPSEALDLFK 136
+AL+LF+
Sbjct: 240 RSGTEKALELFQ 251
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/416 (27%), Positives = 205/416 (49%), Gaps = 60/416 (14%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
+++ I WN ++ + ++ EL +R++ + ++ +L +C LL +G
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279
Query: 66 TQAQAYMTK--RGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
QA ++ K + LI + N L+++ +CG ++DA F E++ ++W+ +IS
Sbjct: 280 MQAHVHIVKYDQDLI----LNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLA 335
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
+G+ EAL LF+ + T N T L A + GL+ + + F SM+++Y I+P
Sbjct: 336 QNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVR 395
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
EHY M++ LG+AG ++ ++ + + + + WRTLL + RV +M LA+YA K++
Sbjct: 396 EHYGCMIDLLGKAGKLDDAVKLLNEM-ECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVI 454
Query: 244 ELDP---GMYV-------------------------------GC-WIEIQNKIYEFV--- 265
LDP G Y GC WIE+ +I+ F+
Sbjct: 455 ALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGD 514
Query: 266 SNEELTSEVSDKLAEIEENMKELGFV--------------LNRSL-YQTKMKAVALGLIS 310
++ EVS KL ++ + +G+V + SL + ++ A+A GL++
Sbjct: 515 NSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMT 574
Query: 311 FPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P R+ K++ +CG H C+ S + R +V++DP +HHF+DGKCSC D +
Sbjct: 575 LPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 38.5 bits (88), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 20/218 (9%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSC---LNPILLNVGTQA 68
I W ++ A K K ++ ELL + + Y+ +L SC + +L+ G
Sbjct: 128 ISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCG--- 184
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
+ K GL S V + LI++ ++ G+ +DA F +++ W II +
Sbjct: 185 ---IIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRS 241
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY-- 186
AL+LFK + T S L+A + L L L M+ HI ++
Sbjct: 242 DVALELFKRMKRAGFIAEQATLTSVLRACTGLAL------LELGMQAHVHIVKYDQDLIL 295
Query: 187 -SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ +V+ + G E+ L + + + W T++
Sbjct: 296 NNALVDMYCKCGSLEDALRVFNQMKERDV--ITWSTMI 331
Score = 35.8 bits (81), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 76/181 (41%), Gaps = 6/181 (3%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
+ DS + +++ C++ ++ G ++ G + N LIN+ + ++DA
Sbjct: 58 WADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQ 117
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F P++N +SWT +ISA +AL+L N T+ S L++ M
Sbjct: 118 LFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSD 177
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V R+ +E S +++ + G E+ L +V G ++W ++
Sbjct: 178 V----RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGD--AIVWNSI 231
Query: 223 L 223
+
Sbjct: 232 I 232
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 172 bits (436), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 182/372 (48%), Gaps = 55/372 (14%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
Y+ + SC G Q A + K G S + GN LI + ++CG +++A F++
Sbjct: 418 YAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRT 477
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
P +S+SW +I+A HGH +EA+D++++ + + T + L A + GLV +
Sbjct: 478 MPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQG 537
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226
+ F SME VY I P +HY+ +++ L R+G F + I+ + P K IW LL
Sbjct: 538 RKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESL-PFKPTAEIWEALLSGC 596
Query: 227 RVHGDMKLAKYALDKLLELDP---GMY-------------------------------VG 252
RVHG+M+L A DKL L P G Y V
Sbjct: 597 RVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVA 656
Query: 253 C-WIEIQNKIYEFVSNEELTSE---VSDKLAEIEENMKELGFVLNRSLY----------- 297
C WIE++ +++ F+ ++ E V L ++ + M+ LG+V + S
Sbjct: 657 CSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKE 716
Query: 298 -----QTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
++ AVA GL+ P G R+ K++ CG H+ RF+S +++R+++++D F
Sbjct: 717 DMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRF 776
Query: 353 HHFKDGKCSCKD 364
HHF++G+CSC +
Sbjct: 777 HHFRNGECSCGN 788
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 89/188 (47%), Gaps = 6/188 (3%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N ++ + Y+ E++ R+ +D ++ ++ +C LL +G Q AY
Sbjct: 252 VAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAY 311
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ +R S N L+++ +CGK D+A F+ P K+ +SW ++S V+ GH EA
Sbjct: 312 VLRREDFSFH-FDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEA 370
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+FK+ + + N ++ + A G E +LF M+ EP + +S ++
Sbjct: 371 KLIFKEMKEK----NILSWMIMISGLAENGFGEEGLKLFSCMKR-EGFEPCDYAFSGAIK 425
Query: 192 ALGRAGMF 199
+ G +
Sbjct: 426 SCAVLGAY 433
Score = 35.0 bits (79), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 8/139 (5%)
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGK----IDDADLAFKSTPEKNSLSWTFIISA 121
Q A K G +V N L+++ S+C + A F EK+ SWT +++
Sbjct: 169 VQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTG 228
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
V +G+ +L + +M + + + Y G EA + M IE
Sbjct: 229 YVKNGYFDLGEELLEGMD---DNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSS-GIEL 284
Query: 182 SEEHYSIMVEALGRAGMFE 200
E Y ++ A AG+ +
Sbjct: 285 DEFTYPSVIRACATAGLLQ 303
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 168/341 (49%), Gaps = 57/341 (16%)
Query: 82 AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWR 141
+V N LI++ + G + DA F PE N++S+ +I HGH +EAL L++
Sbjct: 382 SVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDS 441
Query: 142 YTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEE 201
+ N TF + L A A G V E F +M+E + IEP EHYS M++ LGRAG EE
Sbjct: 442 GIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEE 501
Query: 202 VLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP----------GMYV 251
FI + P K + W LL + R H +M LA+ A ++L+ + P MY
Sbjct: 502 AERFIDAM-PYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYA 560
Query: 252 ------------------------GC-WIEIQNKIYEFVSNE---ELTSEVSDKLAEIEE 283
GC WIE++ K + FV+ + + EV++ L E+ +
Sbjct: 561 DARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMK 620
Query: 284 NMKELGFVLNRSLYQTKMK------------------AVALGLISFPHGMPTRVIKSVGM 325
MK++G+V+++ K AVA GL+S G V+K++ +
Sbjct: 621 KMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRI 680
Query: 326 CGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
CG H+A +FMS + RE++V+D FH FKDGKCSC D +
Sbjct: 681 CGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 68/146 (46%), Gaps = 3/146 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ +N L+ A++ L +R++ +D +++ ++ +C + + ++ Q +
Sbjct: 106 VSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRV--DLIKQLHCF 163
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE-KNSLSWTFIISARVNHGHPSE 130
G S+ +V N + S+ G + +A F E ++ +SW +I A H ++
Sbjct: 164 SVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAK 223
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKA 156
AL L+K+ ++ ++ T S L A
Sbjct: 224 ALALYKEMIFKGFKIDMFTLASVLNA 249
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
E+ WN ++ A + K+ L + + ID +++ +LN+ + L G Q
Sbjct: 205 EVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHG 264
Query: 71 YMTKRGLISHPAVGNCLININSRCGKID---DADLAFKSTPEKNSLSWTFIISA-RVNHG 126
+ K G + VG+ LI+ S+CG D D++ F+ + + W +IS +N
Sbjct: 265 KLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEE 324
Query: 127 HPSEALDLFKDKQ 139
EA+ F+ Q
Sbjct: 325 LSEEAVKSFRQMQ 337
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L G A K + S + N +N+ S+CG++ A AF ST E N S+ I+ A
Sbjct: 24 LFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKA 83
Query: 122 RVNHGHPSEALDLFKD 137
A LF +
Sbjct: 84 YAKDSKIHIARQLFDE 99
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 122/421 (28%), Positives = 194/421 (46%), Gaps = 61/421 (14%)
Query: 2 KLCSLISDVEI-PWNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCL- 57
K+ S I D +I W+ +L + + E ++ +L G I + ++ ILN C
Sbjct: 449 KVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFG--ELTKGGIKPNEFTFSSILNVCAA 506
Query: 58 NPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTF 117
+ G Q + K L S V + L+ + ++ G I+ A+ FK EK+ +SW
Sbjct: 507 TNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNS 566
Query: 118 IISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVY 177
+IS HG +ALD+FK+ + R M+ TF A GLV E + F M
Sbjct: 567 MISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDC 626
Query: 178 HIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKY 237
I P++EH S MV+ RAG E+ ++ I+ + P IWRT+L + RVH +L +
Sbjct: 627 KIAPTKEHNSCMVDLYSRAGQLEKAMKVIENM-PNPAGSTIWRTILAACRVHKKTELGRL 685
Query: 238 ALDKLLELDP----------GMYVG-------------------------CWIEIQNKIY 262
A +K++ + P MY WIE++NK Y
Sbjct: 686 AAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTY 745
Query: 263 EFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAV 304
F++ + L ++ KL ++ +K+LG+ + S ++ A+
Sbjct: 746 SFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAI 805
Query: 305 ALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHF-KDGKCSCK 363
A GLI+ P G P +IK++ +CG H + ++ I ERE+VV+D FHHF DG CSC
Sbjct: 806 AFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCG 865
Query: 364 D 364
D
Sbjct: 866 D 866
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 62/144 (43%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W L+ + + V L R+Q +S++ L + G Q
Sbjct: 160 VTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTV 219
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K GL V N LIN+ +CG + A + F T K+ ++W +IS +G EA
Sbjct: 220 VVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEA 279
Query: 132 LDLFKDKQWRYTSMNPTTFRSALK 155
L +F + Y ++ ++F S +K
Sbjct: 280 LGMFYSMRLNYVRLSESSFASVIK 303
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 43/105 (40%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Q K G + +VG L++ + D F E+N ++WT +IS
Sbjct: 112 GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYAR 171
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
+ E L LF Q T N TF +AL A G+ G ++
Sbjct: 172 NSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQV 216
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 76/195 (38%), Gaps = 20/195 (10%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
S ++ C N L Q + K G + + L+ S+C + DA FK
Sbjct: 297 SFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEI 356
Query: 108 P-EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
N +SWT +IS + + EA+DLF + + + N T+ L A +
Sbjct: 357 GCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPV------- 409
Query: 167 YRLFLSMEEVY------HIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWR 220
+S EV+ + E S + +++A + G EE + GI + + W
Sbjct: 410 ----ISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDI--VAWS 463
Query: 221 TLLLSSRVHGDMKLA 235
+L G+ + A
Sbjct: 464 AMLAGYAQTGETEAA 478
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 40/93 (43%)
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
++ A + K VG L++ + GK+++A F +K+ ++W+ +++
Sbjct: 413 SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQT 472
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
G A+ +F + N TF S L A
Sbjct: 473 GETEAAIKMFGELTKGGIKPNEFTFSSILNVCA 505
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 168 bits (425), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 106/373 (28%), Positives = 171/373 (45%), Gaps = 54/373 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y++ +++C N L G+Q GLI + V N L+ + +CG IDD+ F
Sbjct: 370 DHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLF 429
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
++++SWT ++SA G E + LF + T + A + GLV
Sbjct: 430 NEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVE 489
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ R F M Y I PS HYS M++ R+G EE + FI G+ P + W TLL
Sbjct: 490 KGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGM-PFPPDAIGWTTLLS 548
Query: 225 SSRVHGDMKLAKYALDKLLELDPGMYVG-------------------------------- 252
+ R G++++ K+A + L+ELDP G
Sbjct: 549 ACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKE 608
Query: 253 ---CWIEIQNKIYEFVSNEELT---SEVSDKLAEIEENMKELGFVLNRSL---------- 296
WI+ + K++ F +++E + ++ KL E+ + + G+ + S
Sbjct: 609 PGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVK 668
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ A+A GLI P G P RV K++ +C H+A + +S++ RE++V+D
Sbjct: 669 VKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVR 728
Query: 352 FHHFKDGKCSCKD 364
FH FKDG CSC D
Sbjct: 729 FHRFKDGTCSCGD 741
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 65/158 (41%)
Query: 1 LKLCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60
L+L + + W ++K + + E +++ +D Y +L +C
Sbjct: 225 LQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLG 284
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
+N G Q A + + H VG+ LI++ +C + A F +KN +SWT ++
Sbjct: 285 AINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVV 344
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
G EA+ +F D Q + T A+ A A
Sbjct: 345 GYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACA 382
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVG-NCLININSRCGKIDDADLAFKSTPEK 110
++ S L + NVG + A GL V N L+ CG I+DA F+ EK
Sbjct: 175 LVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EK 233
Query: 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169
+S+SW +I +G EA++ F++ + + M+ F S L A +G + E ++
Sbjct: 234 DSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQI 292
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 197/408 (48%), Gaps = 56/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN L+ A + + +QL ++ ++ L++C L +G +
Sbjct: 330 VAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHS 389
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ K G+ + V + LI++ S+CG ++ + F S +++ W+ +I HG +E
Sbjct: 390 YIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNE 449
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A+D+F Q N TF + A + GLV EA LF ME Y I P E+HY+ +V
Sbjct: 450 AVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIV 509
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGR+G E+ ++FI+ + P +W LL + ++H ++ LA+ A +LLEL+P
Sbjct: 510 DVLGRSGYLEKAVKFIEAM-PIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRND 568
Query: 248 GMYV---------GCW-----------------------IEIQNKIYEFVSNEE---LTS 272
G +V G W IEI I+EF+S + ++
Sbjct: 569 GAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSE 628
Query: 273 EVSDKLAEIEENMKELGFVLNRS-----LYQTKMK-----------AVALGLISFPHGMP 316
+V KL E+ E +K G+ S + + +MK A+ GLIS
Sbjct: 629 KVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKV 688
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
RVIK++ +CG HS + +S + +RE++V+D FHHF++G+CSC D
Sbjct: 689 IRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCND 736
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 98/243 (40%), Gaps = 10/243 (4%)
Query: 11 EIP------WNLLLKACIKAKDYEM-VHELLERIQLCCGFIDSYSICDILNSCLNPILLN 63
EIP WN L++A D + + L+ + + + Y+ ++ + L+
Sbjct: 89 EIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLS 148
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
+G K + S V N LI+ CG +D A F + EK+ +SW +I+ V
Sbjct: 149 LGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFV 208
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
G P +AL+LFK + + T L A A + + E R S E + +
Sbjct: 209 QKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNL-EFGRQVCSYIEENRVNVNL 267
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
+ M++ + G E+ + + W T+L + D + A+ L+ +
Sbjct: 268 TLANAMLDMYTKCGSIEDAKRLFDAMEEKD--NVTWTTMLDGYAISEDYEAAREVLNSMP 325
Query: 244 ELD 246
+ D
Sbjct: 326 QKD 328
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/251 (19%), Positives = 103/251 (41%), Gaps = 35/251 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN ++ ++ + EL ++++ ++ +L++C L G Q +Y
Sbjct: 198 VSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSY 257
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAF--------------------------- 104
+ + + + + N ++++ ++CG I+DA F
Sbjct: 258 IEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAA 317
Query: 105 ----KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYT-SMNPTTFRSALKAYAL 159
S P+K+ ++W +ISA +G P+EAL +F + Q + +N T S L A A
Sbjct: 318 REVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQ 377
Query: 160 MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIW 219
+G + E R S + + I + S ++ + G E+ E + K +W
Sbjct: 378 VGAL-ELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSV--EKRDVFVW 434
Query: 220 RTLLLSSRVHG 230
++ +HG
Sbjct: 435 SAMIGGLAMHG 445
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/419 (26%), Positives = 201/419 (47%), Gaps = 64/419 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-----------DSYSICDILNSCLNPI 60
+ WN ++ + ++ +E LL ++Q + +S ++ IL SC
Sbjct: 472 VTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALS 531
Query: 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L G + AY K L + AVG+ L+++ ++CG + + F P+KN ++W II
Sbjct: 532 ALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIM 591
Query: 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE 180
A HG+ EA+DL + + N TF S A + G+V E R+F M+ Y +E
Sbjct: 592 AYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVE 651
Query: 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240
PS +HY+ +V+ LGRAG +E + + + W +LL +SR+H ++++ + A
Sbjct: 652 PSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQ 711
Query: 241 KLLELDPGM---YV-------------------------------GC-WIEIQNKIYEFV 265
L++L+P + YV GC WIE +++++FV
Sbjct: 712 NLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFV 771
Query: 266 ---SNEELTSEVSDKLAEIEENMKELGFVLNRSLY---------------QTKMKAVALG 307
S+ + ++S L + E M++ G+V + S ++ A+A G
Sbjct: 772 AGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFG 831
Query: 308 LISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+++ G RV K++ +C H A +F+S I++RE++++D FH FK+G CSC D +
Sbjct: 832 ILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S ++ ++ +C+ + ++ KRGL V N L+++ SR GKID A F
Sbjct: 404 NSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIF 463
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALK 155
+++ ++W +I+ V H +AL L Q ++ R +LK
Sbjct: 464 GKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLK 514
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN +L + + + E L + L D ++I +L +C + +L G + AY
Sbjct: 268 VTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAY 327
Query: 72 MTKRG-LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
K G L + VG+ L+++ C ++ F ++ W +I+ + H E
Sbjct: 328 ALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKE 387
Query: 131 ALDLF 135
AL LF
Sbjct: 388 ALLLF 392
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGL-ISHPAVGNCLININSRCGKIDDADLA 103
D+Y+ +L + + + +G Q A++ K G + V N L+N+ +CG
Sbjct: 96 DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 155
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
F E+N +SW +IS+ + AL+ F+
Sbjct: 156 FDRISERNQVSWNSLISSLCSFEKWEMALEAFR 188
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 11 EIPWNLLLKACIKAKDYEMVHE-----LLERIQLCCGFIDSYSICDILNSCLN---PILL 62
++ WN L+ + + +EM E L E ++ S+++ ++ +C N P L
Sbjct: 164 QVSWNSLISSLCSFEKWEMALEAFRCMLDENVE-----PSSFTLVSVVTACSNLPMPEGL 218
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
+G Q AY ++G ++ + N L+ + + GK+ + + S ++ ++W ++S+
Sbjct: 219 MMGKQVHAYGLRKGELNSFII-NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSL 277
Query: 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156
+ EAL+ ++ + T S L A
Sbjct: 278 CQNEQLLEALEYLREMVLEGVEPDEFTISSVLPA 311
>sp|Q9FK33|PP427_ARATH Pentatricopeptide repeat-containing protein At5g50390,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2
SV=1
Length = 701
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 173/376 (46%), Gaps = 58/376 (15%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
ID +++ ++ L + QA A + + G S L++ S+ G++D A
Sbjct: 323 IDQFTLSIMIRISTKLAKLELTKQAHASLIRNGFESEIVANTALVDFYSKWGRVDTARYV 382
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F P KN +SW ++ NHG ++A+ LF+ + N TF + L A A GL
Sbjct: 383 FDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAANVAPNHVTFLAVLSACAYSGLS 442
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ + +FLSM EV+ I+P HY+ M+E LGR G+ +E + FI+ P K +W LL
Sbjct: 443 EQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAIAFIRR-APLKTTVNMWAALL 501
Query: 224 LSSRVHGDMKLAKYALDKLLELDP---GMYV----------------------------- 251
+ R+ +++L + +KL + P G YV
Sbjct: 502 NACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNMYNSMGKTAEAAGVLETLESKGLSM 561
Query: 252 --GC-WIEIQNKIYEFVS-------NEELTSEVSDKLAEIEENMKELGFVLNRS------ 295
C W+E+ ++ + F+S NE + ++ K+ E+ E + E G+
Sbjct: 562 MPACTWVEVGDQTHSFLSGDRFDSYNETVKRQIYQKVDELMEEISEYGYSEEEQHLLPDV 621
Query: 296 ---------LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVV 346
Y ++ A+A GL++ P P ++ ++ +C H F+S + RE+VV
Sbjct: 622 DEKEEERVGRYHSEKLAIAYGLVNTPEWNPLQITQNHRICKNCHKVVEFISLVTGREMVV 681
Query: 347 KDPGSFHHFKDGKCSC 362
+D FHHFK+GKCSC
Sbjct: 682 RDASRFHHFKEGKCSC 697
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%)
Query: 64 VGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123
VG Q K G++ + V LI++ S+CG I+DA AF+ PEK +++W +I+
Sbjct: 242 VGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGYA 301
Query: 124 NHGHPSEALDLFKDKQWRYTSMNPTTF 150
HG+ EAL L D + S++ T
Sbjct: 302 LHGYSEEALCLLYDMRDSGVSIDQFTL 328
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Query: 32 ELLERIQLCCGFIDSYSICDIL-NSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI 90
EL E +++ C F S D L +C+ + + +M G + N ++ +
Sbjct: 108 ELFEILEIRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLM 167
Query: 91 NSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
+ +CG I DA F PE+N S+ IIS VN G+ EA +LFK + TF
Sbjct: 168 HVKCGMIIDARRLFDEIPERNLYSYYSIISGFVNFGNYVEAFELFKMMWEELSDCETHTF 227
Query: 151 RSALKAYALMGLV 163
L+A A +G +
Sbjct: 228 AVMLRASAGLGSI 240
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 165 bits (418), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 180/408 (44%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W+ ++ ++ K+YE L R Q + +++ ++ +C N L G Q A
Sbjct: 229 VTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAV 288
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K G S+ V + +++ ++CG + ++ + F EKN W IIS H P E
Sbjct: 289 ICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEV 348
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ LF+ Q N TF S L GLV E R F M Y + P+ HYS MV+
Sbjct: 349 MILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVD 408
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG+ E E IK I P IW +LL S RV+ +++LA+ A +KL EL+P G
Sbjct: 409 ILGRAGLLSEAYELIKSI-PFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAG 467
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEE---LTSE 273
+V WI+I++K++ F E E
Sbjct: 468 NHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIRE 527
Query: 274 VSDKLAEIEENMKELGF--VLNRSLYQTKMK-------------AVALGLISFPHGMPTR 318
+ L + ++ G+ + L+ ++ A+ GL+ P P R
Sbjct: 528 ICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVR 587
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
++K++ +C H + S R ++V+D FHHF DG CSC D +
Sbjct: 588 IMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635
Score = 39.3 bits (90), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 40/154 (25%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF---KDKQWR 141
N LIN S+CG ++ A F E++ +SW +I + SEALD+F +++ ++
Sbjct: 100 NVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFK 159
Query: 142 YTSMNPTTFRSA--------------------------------LKAYALMGLVGEAYRL 169
++ ++ SA L YA G++ +A ++
Sbjct: 160 FSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQV 219
Query: 170 FLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVL 203
F SM+ + S +S MV + +EE L
Sbjct: 220 FESMQ-----DKSSVTWSSMVAGYVQNKNYEEAL 248
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 196/408 (48%), Gaps = 57/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERI--QLCCGFIDSYSICDILNSCLNPILLNVGTQAQ 69
+ W +++ + D ELL + + C ++++I L +C + L +G Q
Sbjct: 441 VTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIH 500
Query: 70 AYMTKRGLISHPA-VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
AY + + P V NCLI++ ++CG I DA L F + KN ++WT +++ HG+
Sbjct: 501 AYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYG 560
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
EAL +F + + ++ T L A + G++ + F M+ V+ + P EHY+
Sbjct: 561 EEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYAC 620
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL--- 245
+V+ LGRAG L I+ + P + P++W L R+HG ++L +YA +K+ EL
Sbjct: 621 LVDLLGRAGRLNAALRLIEEM-PMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASN 679
Query: 246 DPGMYV-------------------------------GC-WIE-IQNKIYEFVSN----- 267
G Y GC W+E I+ FV +
Sbjct: 680 HDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPH 739
Query: 268 -EELTSEVSDKLAEIEE--NMKELGFVLNRS--------LYQTKMK-AVALGLISFPHGM 315
+E+ + D + I++ + E GF L+ L++ K A+A G+++ P G
Sbjct: 740 AKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGA 799
Query: 316 PTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCK 363
R+ K++ +CG H+A +MS II+ +++++D FHHFK+G CSCK
Sbjct: 800 AIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCK 847
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 81/157 (51%), Gaps = 3/157 (1%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERI--QLCCGFIDSYSICDILNSCLNPILLNVGTQAQ 69
+ WN ++++ K ++ E+ R+ + C D+ ++ ++L C + ++G Q
Sbjct: 194 VSWNSIIESYAKLGKPKVALEMFSRMTNEFGCR-PDNITLVNVLPPCASLGTHSLGKQLH 252
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ +I + VGNCL+++ ++CG +D+A+ F + K+ +SW +++ G
Sbjct: 253 CFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFE 312
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
+A+ LF+ Q M+ T+ +A+ YA GL EA
Sbjct: 313 DAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEA 349
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+Y+ + +C + G A A G IS+ VGN L+ + SRC + DA F
Sbjct: 126 DNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVF 185
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
+ +SW II + G P AL++F
Sbjct: 186 DEMSVWDVVSWNSIIESYAKLGKPKVALEMF 216
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 48 SICDILNSCLNPILLNVGTQAQAY-------MTKRGLISHPAVGNCLININSRCGKIDDA 100
++ +L+ C + L G + Y + K G V N LI++ ++C K+D A
Sbjct: 367 TLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTA 426
Query: 101 DLAFKS-TP-EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
F S +P E++ ++WT +I HG ++AL+L + P F
Sbjct: 427 RAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAF 478
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 187/409 (45%), Gaps = 61/409 (14%)
Query: 12 IPWNLLL----KACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQ 67
I WN ++ K C + + + LLE + D ++ +L +C + + G +
Sbjct: 464 ISWNTIIGGYSKNCYANEALSLFNLLLEEKRFS---PDERTVACVLPACASLSAFDKGRE 520
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
Y+ + G S V N L+++ ++CG + A + F K+ +SWT +I+ HG
Sbjct: 521 IHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGF 580
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
EA+ LF + + +F S L A + GLV E +R F M IEP+ EHY+
Sbjct: 581 GKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 640
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
+V+ L R G + FI+ + P IW LL R+H D+KLA+ +K+ EL+P
Sbjct: 641 CIVDMLARTGDLIKAYRFIENM-PIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEP 699
Query: 248 ---GMYV-------------------------------GC-WIEIQNKIYEFVSNEELTS 272
G YV GC WIEI+ ++ FV+ +
Sbjct: 700 ENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNP 759
Query: 273 EVSDK---LAEIEENMKELGF--VLNRSLY-------------QTKMKAVALGLISFPHG 314
E + L ++ M E G+ + +L ++ A+ALG+IS HG
Sbjct: 760 ETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHG 819
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCK 363
RV K++ +CG H +FMS + RE+V++D FH FKDG CSC+
Sbjct: 820 KIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCR 868
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y++ +LN C LL+ G + ++ + L V N L+++ ++CG + +A+L F
Sbjct: 396 DVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVF 455
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
K+ +SW II + + +EAL LF
Sbjct: 456 SEMRVKDIISWNTIIGGYSKNCYANEALSLF 486
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 58/122 (47%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN+L+ K+ D+ L +++ +DSY+ + S + ++ G Q ++
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 222
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G +VGN L+ + ++D A F E++ +SW II+ V++G + L
Sbjct: 223 KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 282
Query: 134 LF 135
+F
Sbjct: 283 VF 284
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 58/126 (46%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
ID +I + C + L+++G + K N L+++ S+CG +D A
Sbjct: 294 IDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAV 353
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
F+ +++ +S+T +I+ G EA+ LF++ + S + T + L A L+
Sbjct: 354 FREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLL 413
Query: 164 GEAYRL 169
E R+
Sbjct: 414 DEGKRV 419
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 50/115 (43%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
ID ++C +L C + L G + ++ G + +G+ L + + CG + +A
Sbjct: 92 IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRV 151
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
F + +L W +++ G S ++ LFK M+ TF K+++
Sbjct: 152 FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFS 206
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 162 bits (411), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/374 (27%), Positives = 182/374 (48%), Gaps = 56/374 (14%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ IL+ C + L+ G Q A + + V + L+ + +CG++ + L F
Sbjct: 333 TLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRF 392
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWR-YTSMNPTTFRSALKAYALMGLVGEA 166
P K+ + W IIS +HG EAL +F + T N TF + L A + G+V E
Sbjct: 393 PSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEG 452
Query: 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226
+++ SME V+ ++P HY+ MV+ LGRAG F E +E I + + +W +LL +
Sbjct: 453 LKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTV-EPDAAVWGSLLGAC 511
Query: 227 RVHGDMKLAKYALDKLLELDP---GMYV-------------------------------G 252
R H + +A++ KL+E++P G Y+ G
Sbjct: 512 RTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPG 571
Query: 253 C-WIEIQNKIYEF----VSNEELTSEVSDKLAEIEENMKELGF---------------VL 292
C W E++NK++ F +++ + L E++ ++E G+ +
Sbjct: 572 CSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKV 631
Query: 293 NRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSF 352
N Y ++ AVA L+ G+P RV+K++ +C H+A + +S + ERE++++D F
Sbjct: 632 NSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRF 691
Query: 353 HHFKDGKCSCKDAY 366
HHF++G+CSCKD +
Sbjct: 692 HHFRNGECSCKDYW 705
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 19/175 (10%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M R +IS N L++ + G+ID+A F PE+N +SWT ++ V++G A
Sbjct: 74 MPDRNIISW----NGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVA 129
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH--YSIM 189
LF W+ N ++ L + G + +A +L Y + P +++ + M
Sbjct: 130 ESLF----WKMPEKNKVSWTVMLIGFLQDGRIDDACKL-------YEMIPDKDNIARTSM 178
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+ L + G +E E + + + W T++ + + A+ D + E
Sbjct: 179 IHGLCKEGRVDEAREIFDEMSERSV--ITWTTMVTGYGQNNRVDDARKIFDVMPE 231
Score = 38.5 bits (88), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M++R +I+ ++ + ++DDA F PEK +SWT ++ V +G +A
Sbjct: 198 MSERSVITW----TTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDA 253
Query: 132 LDLFKDKQWRYTSMNPTTFRSAL-KAYALMGLVGEAYRLFLSMEE 175
+LF+ + P +A+ G + +A R+F SM+E
Sbjct: 254 EELFE-----VMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKE 293
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 81 PAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQW 140
P N I SR GKI +A F S K+ SW +++ + P +A LF +
Sbjct: 17 PPTANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPD 76
Query: 141 RYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175
R N ++ + Y G + EA ++F M E
Sbjct: 77 R----NIISWNGLVSGYMKNGEIDEARKVFDLMPE 107
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 71/157 (45%), Gaps = 13/157 (8%)
Query: 95 GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154
G+IDDA ++ P+K++++ T +I G EA ++F + R T+ + +
Sbjct: 155 GRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSV----ITWTTMV 210
Query: 155 KAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL 214
Y V +A ++F M E +E ++ M+ + G E+ E + ++P K
Sbjct: 211 TGYGQNNRVDDARKIFDVMP-----EKTEVSWTSMLMGYVQNGRIEDAEELFE-VMPVK- 263
Query: 215 CPLIWRTLLLSSRVH-GDMKLAKYALDKLLELDPGMY 250
P+I ++S G++ A+ D + E + +
Sbjct: 264 -PVIACNAMISGLGQKGEIAKARRVFDSMKERNDASW 299
Score = 35.4 bits (80), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
N +I+ + G+I A F S E+N SW +I +G EALDLF
Sbjct: 269 NAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLF 319
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 162 bits (411), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 186/376 (49%), Gaps = 55/376 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+SY++ +L+ + L+ G Q K G I +V N LI + ++ G I A AF
Sbjct: 412 NSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAF 471
Query: 105 KSTP-EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163
E++++SWT +I A HGH EAL+LF+ + T+ A GLV
Sbjct: 472 DLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLV 531
Query: 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223
+ + F M++V I P+ HY+ MV+ GRAG+ +E EFI+ + P + + W +LL
Sbjct: 532 NQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM-PIEPDVVTWGSLL 590
Query: 224 LSSRVHGDMKLAKYALDKLLELDP----------GMYVGC-------------------- 253
+ RVH ++ L K A ++LL L+P +Y C
Sbjct: 591 SACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKK 650
Query: 254 -----WIEIQNKIYEFVSNEEL---TSEVSDKLAEIEENMKELGFVLNRS---------- 295
WIE+++K++ F + +E+ + +I + +K++G+V + +
Sbjct: 651 EQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEV 710
Query: 296 -----LYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350
+ ++ A+A GLIS P R++K++ +C H+A +F+S ++ RE++V+D
Sbjct: 711 KEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTT 770
Query: 351 SFHHFKDGKCSCKDAY 366
FHHFKDG CSC+D +
Sbjct: 771 RFHHFKDGFCSCRDYW 786
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD--L 102
D +++ +L++C N L +G Q +++ G V N LI++ SRCG ++ A +
Sbjct: 278 DRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLI 337
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
+ T + +T ++ + G ++A ++F + R + + + + Y G
Sbjct: 338 EQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDR----DVVAWTAMIVGYEQHGS 393
Query: 163 VGEAYRLFLSM 173
GEA LF SM
Sbjct: 394 YGEAINLFRSM 404
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 40/157 (25%)
Query: 28 EMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL 87
+MV E +E Q +++ ++L S + G + +++ K GL + +V N L
Sbjct: 136 DMVKEGIEPTQ--------FTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSL 187
Query: 88 ININSRCG----------------------------KIDDADLA---FKSTPEKNSLSWT 116
+N+ ++CG ++ DLA F+ E++ ++W
Sbjct: 188 LNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWN 247
Query: 117 FIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSA 153
+IS G+ ALD+F K R + ++P F A
Sbjct: 248 SMISGFNQRGYDLRALDIFS-KMLRDSLLSPDRFTLA 283
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K GL+ + N L+N+ S+ G A F P + + SW ++SA G +
Sbjct: 42 KSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCE 101
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
F R + ++ + + Y +G +A R+ M + IEP++
Sbjct: 102 FFDQLPQR----DSVSWTTMIVGYKNIGQYHKAIRVMGDMVK-EGIEPTQ 146
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 162 bits (409), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 176/380 (46%), Gaps = 64/380 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
+S + L C L +G Q ++K L + LI++ +CG++ DA F
Sbjct: 283 NSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLF 342
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
+ +K+ ++W +IS HG+ +AL LF++ + TF + L A GLV
Sbjct: 343 EVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVN 402
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
F SM Y +EP +HY+ MV+ LGRAG EE L+ I+ + P + ++ TLL
Sbjct: 403 IGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSM-PFRPHAAVFGTLLG 461
Query: 225 SSRVHGDMKLAKYALDKLLELDPGMYVG-------------------------------- 252
+ RVH +++LA++A +KLL+L+ G
Sbjct: 462 ACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKV 521
Query: 253 ---CWIEIQNKIYEFVSNEELTSEVSD-----------------------KLAEIEENMK 286
WIEI+NK++ F S++ + E+ L +EE K
Sbjct: 522 PGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQK 581
Query: 287 ELGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVV 346
E L+ ++ AVA G I P G +V K++ +CG H A +F+S I +RE++V
Sbjct: 582 EKLL-----LWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIV 636
Query: 347 KDPGSFHHFKDGKCSCKDAY 366
+D FHHFKDG CSC D +
Sbjct: 637 RDTTRFHHFKDGSCSCGDYW 656
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 9/126 (7%)
Query: 12 IPWNLLLKACIKAKDYEM-VHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
I WN LL K M H+L + I D++S +I+ SC + NV +
Sbjct: 93 ITWNSLLIGISKDPSRMMEAHQLFDEIPEP----DTFSY-NIMLSCY---VRNVNFEKAQ 144
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
R A N +I +R G+++ A F S EKN +SW +IS + G +
Sbjct: 145 SFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEK 204
Query: 131 ALDLFK 136
A FK
Sbjct: 205 ASHFFK 210
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 69/171 (40%), Gaps = 17/171 (9%)
Query: 11 EIP------WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
EIP +N++L ++ ++E +R+ F D+ S ++ +
Sbjct: 118 EIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMP----FKDAASWNTMITGYARRGEMEK 173
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
+ M ++ +S N +I+ CG ++ A FK P + ++WT +I+ +
Sbjct: 174 ARELFYSMMEKNEVS----WNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMK 229
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175
A +FKD + N T+ + + Y + +LF +M E
Sbjct: 230 AKKVELAEAMFKDMT---VNKNLVTWNAMISGYVENSRPEDGLKLFRAMLE 277
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 162 bits (409), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 180/406 (44%), Gaps = 58/406 (14%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN ++ + E L +Q + +I IL++C L++G +
Sbjct: 388 WNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVR 447
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
S V LI + ++CG I +A F +KN ++W +IS HG EAL+
Sbjct: 448 STDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALN 507
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
+F + + P TF L A + GLV E +F SM Y EPS +HY+ MV+ L
Sbjct: 508 IFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDIL 567
Query: 194 GRAGMFEEVLEFIKG--IVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
GRAG + L+FI+ I PG +W TLL + R+H D LA+ +KL ELDP G
Sbjct: 568 GRAGHLQRALQFIEAMSIEPGS---SVWETLLGACRIHKDTNLARTVSEKLFELDPDNVG 624
Query: 249 MYV--------------------------------GCWIEIQNKIYEFVSNEE---LTSE 273
+V IEI + F S ++ E
Sbjct: 625 YHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKE 684
Query: 274 VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
+ +KL ++E M+E G+ L ++ A+A GLI+ G R
Sbjct: 685 IYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIR 744
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+IK++ +C H+ + +S I ER +VV+D FHHFKDG CSC D
Sbjct: 745 IIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGD 790
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%)
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
Y K +SH +V L + S+ +I+ A F +PEK+ SW +IS +G
Sbjct: 342 HGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLT 401
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+A+ LF++ Q S NP T L A A +G
Sbjct: 402 EDAISLFREMQKSEFSPNPVTITCILSACAQLG 434
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 1/127 (0%)
Query: 12 IPWNLLLKACIKAKDY-EMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
I WN ++ K + Y E + + I C +D+ ++ DIL + L +G Q +
Sbjct: 186 ILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHS 245
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
TK G SH V I++ S+CGKI F+ + + +++ +I ++G
Sbjct: 246 LATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETEL 305
Query: 131 ALDLFKD 137
+L LFK+
Sbjct: 306 SLSLFKE 312
Score = 32.0 bits (71), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDK-QWR 141
+G+ ++ + + +++DA F PEK+++ W +IS + E++ +F+D
Sbjct: 156 LGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINES 215
Query: 142 YTSMNPTTFRSALKAYA 158
T ++ TT L A A
Sbjct: 216 CTRLDTTTLLDILPAVA 232
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 162 bits (409), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 182/375 (48%), Gaps = 57/375 (15%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D ++ L++C L G ++ + + V LI++ S+CG +++A L F
Sbjct: 258 DEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVF 317
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGL 162
TP K+ ++W +I+ HG+ +AL LF + Q T + PT TF L+A A GL
Sbjct: 318 NDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQG-ITGLQPTDITFIGTLQACAHAGL 376
Query: 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL 222
V E R+F SM + Y I+P EHY +V LGRAG + E IK + ++W ++
Sbjct: 377 VNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNM-NMDADSVLWSSV 435
Query: 223 LLSSRVHGDMKLAKYALDKLLEL---DPGMY---------VGCW---------------- 254
L S ++HGD L K + L+ L + G+Y VG +
Sbjct: 436 LGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIV 495
Query: 255 -------IEIQNKIYEFVSNEELTS---EVSDKLAEIEENMKELGFVLN-----RSLYQT 299
IEI+NK++EF + + S E+ L +I E +K G+V N + L +T
Sbjct: 496 KEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEET 555
Query: 300 KMK----------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349
+ + A+A GLIS G P ++ K++ +C H+ + +S I R++V++D
Sbjct: 556 EKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDR 615
Query: 350 GSFHHFKDGKCSCKD 364
FHHF DG CSC D
Sbjct: 616 NRFHHFTDGSCSCGD 630
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILL 62
L S I+ E ++ LLK+C K +++H + + L ID Y +++ +
Sbjct: 122 LSSEINPNEFTFSSLLKSC-STKSGKLIHTHVLKFGLG---IDPYVATGLVDVYAKGGDV 177
Query: 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122
+ M +R L+S A+ C ++ G ++ A F S E++ +SW +I
Sbjct: 178 VSAQKVFDRMPERSLVSSTAMITCY----AKQGNVEAARALFDSMCERDIVSWNVMIDGY 233
Query: 123 VNHGHPSEALDLFK 136
HG P++AL LF+
Sbjct: 234 AQHGFPNDALMLFQ 247
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 161 bits (407), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 107/371 (28%), Positives = 177/371 (47%), Gaps = 55/371 (14%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
++ +L+SC L++G Y K + V LI++ ++CG +DDA F+
Sbjct: 232 TLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKM 291
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
K++ +W+ +I A NHG +++ +F+ + + TF L A + G V E
Sbjct: 292 RYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGR 351
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
+ F M + I PS +HY MV+ L RAG E+ EFI + P P++WR LL +
Sbjct: 352 KYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKL-PISPTPMLWRILLAACS 410
Query: 228 VHGDMKLAKYALDKLLELDP---GMYV-------------------------------GC 253
H ++ LA+ +++ ELD G YV GC
Sbjct: 411 SHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGC 470
Query: 254 -WIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKEL---GFVLNRSL------------- 296
IE+ N ++EF S + + S + ++E +KEL G+V + S+
Sbjct: 471 SSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEI 530
Query: 297 ---YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
Y ++ A+ GL++ P G RV+K++ +C H+A + +S I R++V++D FH
Sbjct: 531 TLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFH 590
Query: 354 HFKDGKCSCKD 364
HF+DGKCSC D
Sbjct: 591 HFEDGKCSCGD 601
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D+Y+ +L +C L G Q K GL + V LIN+ + C +D A F
Sbjct: 128 DNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVF 187
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
E + + +I+ P+EAL LF++ Q +Y N T S L + AL+G
Sbjct: 188 DRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLG 244
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/417 (28%), Positives = 200/417 (47%), Gaps = 72/417 (17%)
Query: 12 IPWNLLLKACIK----AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQ 67
+ WN ++ I AK ++V +L+ Q +DS+ +L++ + L G +
Sbjct: 585 VTWNSMISGYIHNELLAKALDLVWFMLQTGQR----LDSFMYATVLSAFASVATLERGME 640
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
A + L S VG+ L+++ S+CG++D A F + P +NS SW +IS HG
Sbjct: 641 VHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQ 700
Query: 128 PSEALDLFK----DKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
EAL LF+ D Q T + TF L A + GL+ E ++ F SM + Y + P
Sbjct: 701 GEEALKLFETMKLDGQ---TPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRI 757
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS-SRVHG-DMKLAKYALDK 241
EH+S M + LGRAG +++ +FI+ + P K LIWRT+L + R +G +L K A +
Sbjct: 758 EHFSCMADVLGRAGELDKLEDFIEKM-PMKPNVLIWRTVLGACCRANGRKAELGKKAAEM 816
Query: 242 LLELDP----------GMYVG-------------------------CWIEIQNKIYEFVS 266
L +L+P MY W+ +++ ++ FV+
Sbjct: 817 LFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVA 876
Query: 267 NEELTSE---VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGL 308
++ + + KL E+ M++ G+V Y ++ AVA L
Sbjct: 877 GDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVL 936
Query: 309 IS-FPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
+ +P R++K++ +CG HSA +++S I R+++++D FHHF+DG CSC D
Sbjct: 937 AAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSD 993
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Query: 43 FIDSYSICDILNSC--LNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC-GKIDD 99
F + Y+ +L +C + + + G Q M K V N LI++ +C G +
Sbjct: 99 FSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGY 158
Query: 100 ADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRS 152
A AF KNS+SW IIS G A +F Q+ + TF S
Sbjct: 159 ALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGS 211
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 62 LNVGTQAQAYMTKRGLISH-PAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
L G + ++ GL+ +GN L+N+ ++CG I DA F +K+S+SW +I+
Sbjct: 329 LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMIT 388
Query: 121 ARVNHGHPSEALDLFK 136
+G EA++ +K
Sbjct: 389 GLDQNGCFIEAVERYK 404
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK 105
S+++ L+SC + +G Q K G+ + +V N L+ + + G +++ F
Sbjct: 415 SFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFS 474
Query: 106 STPEKNSLSWTFIIS--ARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150
S PE + +SW II AR P EA+ F + Q +N TF
Sbjct: 475 SMPEHDQVSWNSIIGALARSERSLP-EAVVCFLNAQRAGQKLNRITF 520
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 33/80 (41%)
Query: 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144
N LIN G A F P +N +SW I+S +G EAL +D
Sbjct: 40 NNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIF 99
Query: 145 MNPTTFRSALKAYALMGLVG 164
N F S L+A +G VG
Sbjct: 100 SNQYAFVSVLRACQEIGSVG 119
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/370 (30%), Positives = 171/370 (46%), Gaps = 58/370 (15%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L +C L G + + K GL V L ++ +CG+++DA F P N
Sbjct: 457 VLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVN 516
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171
S+ W +I+ HGH +A+ LFK+ + TF + L A + GLV E F
Sbjct: 517 SVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFE 576
Query: 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVH 229
M+ Y I PS +HY MV+ GRAG E L+FIK + L P IW LL + RVH
Sbjct: 577 MMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSM---SLQPDASIWGALLSACRVH 633
Query: 230 GDMKLAKYALDKLLELDP----------GMY--VGCW----------------------- 254
G++ L K A + L E++P MY G W
Sbjct: 634 GNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSS 693
Query: 255 IEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRS---------------L 296
+E+ NK+ F + + + E+ +L ++ +K +G+V + +
Sbjct: 694 MEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILM 753
Query: 297 YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFK 356
++ A+A LI+ P R+ K++ +CG HS +F+S I ERE++V+D FHHFK
Sbjct: 754 SHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFK 813
Query: 357 DGKCSCKDAY 366
+G CSC D +
Sbjct: 814 NGVCSCGDYW 823
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 100/251 (39%), Gaps = 37/251 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLN-----PILLNVGT 66
I WN ++KA YE+ + L I L + I CL IL +G
Sbjct: 314 ISWNSIIKA------YELNEQPLRAISL----FQEMRLSRIQPDCLTLISLASILSQLGD 363
Query: 67 -----QAQAYMTKRG-LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIIS 120
Q + ++G + +GN ++ + ++ G +D A F P + +SW IIS
Sbjct: 364 IRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIIS 423
Query: 121 ARVNHGHPSEALDLFKD-KQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSM------ 173
+G SEA++++ ++ + N T+ S L A + G + + +L +
Sbjct: 424 GYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLY 483
Query: 174 EEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMK 233
+V+ + + Y G+ G E+ L I P W TL+ HG +
Sbjct: 484 LDVFVVTSLADMY-------GKCGRLEDALSLFYQIPRVNSVP--WNTLIACHGFHGHGE 534
Query: 234 LAKYALDKLLE 244
A ++L+
Sbjct: 535 KAVMLFKEMLD 545
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103
+DS ++ +L++C N G +Y K GL S V N LI++ + G++ D
Sbjct: 245 MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKV 304
Query: 104 FKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP 147
F ++ +SW II A + P A+ LF++ R + + P
Sbjct: 305 FDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEM--RLSRIQP 346
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 4/122 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSY-SICDILNSCLNPILLNVGTQAQAYM 72
WNL++ +A + V L G Y + +L +C I G +
Sbjct: 120 WNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVI---DGNKIHCLA 176
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K G + V LI++ SR + +A + F P ++ SW +IS G+ EAL
Sbjct: 177 LKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL 236
Query: 133 DL 134
L
Sbjct: 237 TL 238
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/409 (27%), Positives = 194/409 (47%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I W ++ ++A + +L +Q D+ S+ + L++C L G +Y
Sbjct: 213 ISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSY 272
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ K + +G LI++ ++CG++++A FK+ +K+ +WT +IS HGH EA
Sbjct: 273 LNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREA 332
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
+ F + Q N TF + L A + GLV E +F SME Y+++P+ EHY +V+
Sbjct: 333 ISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVD 392
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG+ +E FI+ + P K +IW LL + R+H +++L + + L+ +DP G
Sbjct: 393 LLGRAGLLDEAKRFIQEM-PLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGG 451
Query: 249 MYV-------------------------------GC-WIEIQNKIYEFVSNEELTSE--- 273
YV GC I ++ +EF++ + E
Sbjct: 452 RYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEK 511
Query: 274 VSDKLAEIEENMKELGFVLNRS---------------LYQTKMK-AVALGLISFPHGMPT 317
+ K + ++E G+V ++Q K A+ GLI G
Sbjct: 512 IQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTII 571
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C H + +S I +R++V++D FHHF+DGKCSC D +
Sbjct: 572 RIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 5/188 (2%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WNL+++ + + E L +R+ ++Y+ +L +C N TQ A +T
Sbjct: 83 WNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQIT 142
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
K G + N LIN + G A L F PE + +SW +I V G AL
Sbjct: 143 KLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALT 202
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF+ + N ++ + + Y + EA +LF M+ +EP + + A
Sbjct: 203 LFR----KMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNS-DVEPDNVSLANALSAC 257
Query: 194 GRAGMFEE 201
+ G E+
Sbjct: 258 AQLGALEQ 265
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 111/412 (26%), Positives = 192/412 (46%), Gaps = 63/412 (15%)
Query: 12 IPWNLLLKACIK----AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQ 67
I WN ++ K + +M HE++ + D+ SI +++C L
Sbjct: 289 ILWNAMISGYAKNGYAREAIDMFHEMINKDVRP----DTISITSAISACAQVGSLEQARS 344
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
Y+ + + + LI++ ++CG ++ A L F T +++ + W+ +I HG
Sbjct: 345 MYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGR 404
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS 187
EA+ L++ + N TF L A G+V E + F M + + I P ++HY+
Sbjct: 405 AREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYA 463
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
+++ LGRAG ++ E IK +P + +W LL + + H ++L +YA +L +DP
Sbjct: 464 CVIDLLGRAGHLDQAYEVIK-CMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDP 522
Query: 248 ---GMY-------------------------------VGC-WIEIQNKIYEFVSNEE--- 269
G Y VGC W+E++ ++ F ++
Sbjct: 523 SNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHP 582
Query: 270 LTSEVSDKLAEIEENMKELGFVLNR--SLY-------------QTKMKAVALGLISFPHG 314
E+ ++ IE +KE GFV N+ SL+ ++ A+A GLIS P G
Sbjct: 583 RYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQG 642
Query: 315 MPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
P R+ K++ C H+A + +S +++RE+VV+D FHHFKDG CSC D +
Sbjct: 643 TPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 4/138 (2%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
PWN +++ + ++ + +QL DS++ +L +C L +G A
Sbjct: 85 FPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQ 144
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKS--TPEKNSLSWTFIISARVNHGHPS 129
+ + G + V N LI + ++C ++ A F+ PE+ +SWT I+SA +G P
Sbjct: 145 VFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPM 204
Query: 130 EALDLFKDKQWRYTSMNP 147
EAL++F Q R + P
Sbjct: 205 EALEIF--SQMRKMDVKP 220
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Query: 45 DSYSICDILN--SCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102
D ++ +LN +CL L G A + K GL P + L + ++CG++ A +
Sbjct: 221 DWVALVSVLNAFTCLQD--LKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKI 278
Query: 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162
F N + W +IS +G+ EA+D+F + + + + SA+ A A +G
Sbjct: 279 LFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGS 338
Query: 163 VGEAYRLF 170
+ +A ++
Sbjct: 339 LEQARSMY 346
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 159 bits (402), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 187/413 (45%), Gaps = 59/413 (14%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQL---CCGFIDSYSICDILNSCLNPILLNVGTQA 68
+ WN+L ++ K V L ++++ C D + L +C N L+ G Q
Sbjct: 180 VSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQV 239
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
++ + GL + N L+++ SRCG +D A F E+N +SWT +IS +G
Sbjct: 240 HDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFG 299
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE-VYHIEPSEEHYS 187
EA++ F + S T L A + GLV E F M + I+P+ HY
Sbjct: 300 KEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYG 359
Query: 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL-- 245
+V+ LGRA + ++ IK + K IWRTLL + RVHGD++L + + L+EL
Sbjct: 360 CVVDLLGRARLLDKAYSLIKSM-EMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKA 418
Query: 246 -DPGMYV---------GCW-----------------------IEIQNKIYEFVSNE---E 269
+ G YV G W IE+Q ++EF+ ++
Sbjct: 419 EEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHP 478
Query: 270 LTSEVSDKLAEIEENMKELGFVLNRS----------------LYQTKMKAVALGLISFPH 313
E+ LAEI + +K G+V + Y ++ A+A G++ P
Sbjct: 479 RKEEIYKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPP 538
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G RV K++ C H+ +F+S + +R ++V+D FHHFK G CSC D +
Sbjct: 539 GTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 36/83 (43%)
Query: 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNS 112
L C+ L G Q + G +S + L+++ S C DA F P++++
Sbjct: 120 LKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDT 179
Query: 113 LSWTFIISARVNHGHPSEALDLF 135
+SW + S + + + L LF
Sbjct: 180 VSWNVLFSCYLRNKRTRDVLVLF 202
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 158 bits (399), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 192/408 (47%), Gaps = 56/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ WN L C++ + + E ++ DS+++ +L++C L +G +
Sbjct: 176 VAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDR 235
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + + V N ++++ +CG + A + F+ ++N +SW+ +I +G EA
Sbjct: 236 ARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREA 295
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEV--YHIEPSEEHYSIM 189
L LF Q N TF L A + GLV E R F M + ++EP +EHY+ M
Sbjct: 296 LTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACM 355
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
V+ LGR+G+ EE EFIK + P + IW LL + VH DM L + D L+E P
Sbjct: 356 VDLLGRSGLLEEAYEFIKKM-PVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDI 414
Query: 248 GMY----------VGCW-----------------------IEIQNKIYEFVSNEE---LT 271
G Y G W +E + KI+ F ++ +
Sbjct: 415 GSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQS 474
Query: 272 SEVSDKLAEIEENMKELGFVLNR--------------SL-YQTKMKAVALGLISFPHGMP 316
+ +KL EI + ++++G+V + SL + ++ A+A GLI G P
Sbjct: 475 KAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHP 534
Query: 317 TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
RV+K++ C H+ +F+S++ E++++D FHHF++G CSCK+
Sbjct: 535 IRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKE 582
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 175/373 (46%), Gaps = 55/373 (14%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
S+ IL+ C L G Q A++ + V + L+ + +CG++ A L F
Sbjct: 333 SLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRF 392
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
K+ + W IIS +HG EAL +F + T N T + L A + G + E
Sbjct: 393 SSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGL 452
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227
+F SME + + P+ EHYS V+ LGRAG ++ +E I+ + K +W LL + +
Sbjct: 453 EIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTI-KPDATVWGALLGACK 511
Query: 228 VHGDMKLAKYALDKLLELDP---GMYV-------------------------------GC 253
H + LA+ A KL E +P G YV GC
Sbjct: 512 THSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGC 571
Query: 254 -WIEIQNKIYEF----VSNEELTSEVSDKLAEIEENMKELGF------VLNRSLYQTKMK 302
WIE+ K++ F + N + + L + + ++E G+ VL+ + K+
Sbjct: 572 SWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVD 631
Query: 303 ---------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFH 353
AVA GL+ P G+P RV+K++ +CG H+A + +S + ERE++++D FH
Sbjct: 632 SLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFH 691
Query: 354 HFKDGKCSCKDAY 366
HF +G+CSC+D +
Sbjct: 692 HFNNGECSCRDYW 704
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 53/136 (38%), Gaps = 36/136 (26%)
Query: 69 QAYMTKRGLISHPAVGNCLININ--SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ Y+T G+ NC I+ SR GKI++A F S K SW I+S ++G
Sbjct: 10 RTYLTSTGV-------NCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNG 62
Query: 127 HPSEALDLFKDKQWRYT---------------------------SMNPTTFRSALKAYAL 159
P EA LF + R N ++ + +K Y
Sbjct: 63 LPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQ 122
Query: 160 MGLVGEAYRLFLSMEE 175
G+VGEA LF M E
Sbjct: 123 EGMVGEAESLFWRMPE 138
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 19/176 (10%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
M++R ++S N L++ + I +A F+ PE+N +SWT ++ + G EA
Sbjct: 74 MSERNVVSW----NGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEA 129
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
LF WR N ++ G + +A +L+ M V + S M+
Sbjct: 130 ESLF----WRMPERNEVSWTVMFGGLIDDGRIDKARKLY-DMMPVKDVVASTN----MIG 180
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247
L R G +E + + + W T++ R + + +A+ KL E+ P
Sbjct: 181 GLCREGRVDEARLIFDEMRERNV--VTWTTMITGYRQNNRVDVAR----KLFEVMP 230
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 111/416 (26%), Positives = 199/416 (47%), Gaps = 64/416 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFI--DSYSICDILNSCLNPILLNVGTQAQ 69
+ W ++ A +++ + + E ++CC I D S+ ++++C N +L+
Sbjct: 310 VCWTTMISAYVESDYPQEALRVFE--EMCCSGIKPDVVSMFSVISACANLGILDKAKWVH 367
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
+ + GL S ++ N LIN+ ++CG +D F+ P +N +SW+ +I+A HG S
Sbjct: 368 SCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEAS 427
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
+AL LF + N TF L + GLV E ++F SM + Y+I P EHY M
Sbjct: 428 DALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCM 487
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP-- 247
V+ GRA + E LE I+ + P +IW +L+ + R+HG+++L K+A ++LEL+P
Sbjct: 488 VDLFGRANLLREALEVIESM-PVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDH 546
Query: 248 -GMYV---------GCWIEIQN-----------------------KIYEFV---SNEELT 271
G V W +++N K +EF+ + +
Sbjct: 547 DGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQS 606
Query: 272 SEVSDKLAEIEENMKELGFV---------------LNRSLYQTKMKAVALGLISFPHGMP 316
+E+ KL E+ +K G+V + L+ ++ A+ GL++
Sbjct: 607 NEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEE 666
Query: 317 T------RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C H + +S + ERE++V+D FH +K+G CSC+D +
Sbjct: 667 KDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY 142
V +++ S+CG++DDA + F T +K+ + WT +ISA V +P EAL +F++
Sbjct: 280 VSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSG 339
Query: 143 TSMNPTTFRSALKAYALMGLVGEA 166
+ + S + A A +G++ +A
Sbjct: 340 IKPDVVSMFSVISACANLGILDKA 363
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 52/126 (41%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I +N L+ ++ + +RI+ G +D +S IL + L G +
Sbjct: 77 IVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGV 136
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
K + P V +++ + CG+I+ A F ++ ++W +I G EA
Sbjct: 137 AFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEA 196
Query: 132 LDLFKD 137
LF++
Sbjct: 197 FKLFEE 202
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 190/402 (47%), Gaps = 48/402 (11%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + V EL E+++ D +++ +L+SC + +G +
Sbjct: 223 ITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKL 282
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ G + + V N I++ +RCG + A F P K+ +SWT +I HG
Sbjct: 283 VESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIG 342
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L LF D R + F L A + GL + LF +M+ Y +EP EHYS +V+
Sbjct: 343 LMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVD 402
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
LGRAG +E +EFI+ + P + +W LL + ++H ++ +A+ A K++E +P G
Sbjct: 403 LLGRAGRLDEAMEFIESM-PVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIG 461
Query: 249 MYV-------------GCW-------------------IEIQNKIYEFVSNE---ELTSE 273
YV G W +E + +++ F++ + E T E
Sbjct: 462 YYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEE 521
Query: 274 VSDKLAEIEENMKELGF---------VLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVG 324
V L E+E ++ EL V + + ++ A+A G+++ G VIK++
Sbjct: 522 VHRMLDELETSVMELAGNMDCDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLR 581
Query: 325 MCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+C H + +S I++R+ VV+D FH+FKDG CSCKD +
Sbjct: 582 VCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%)
Query: 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQ 67
S + + +N L+ + R++ +DS ++ ++ C P L +G
Sbjct: 118 SQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRS 177
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
K GL S AV N I + +CG ++ F P K ++W +IS +G
Sbjct: 178 LHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGL 237
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161
+ L+L++ + +P T S L + A +G
Sbjct: 238 AYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLG 271
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 13 PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
PWN+ L+ + L + D++S IL SC + L G Q ++
Sbjct: 20 PWNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 79
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLS--WTFIISARVNHGHPSE 130
TK G + P V LI++ +CG + DA F+ P+ + LS + +IS + ++
Sbjct: 80 TKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTD 139
Query: 131 ALDLFKDKQWRYTSMNPTT 149
A +F+ + S++ T
Sbjct: 140 AAYMFRRMKETGVSVDSVT 158
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/361 (29%), Positives = 177/361 (49%), Gaps = 60/361 (16%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L +G + + GL VG +I++ +CG+++ A AF KN SWT +I+
Sbjct: 303 LRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAG 362
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
HGH ++AL+LF N TF S L A + GL E +R F +M+ + +EP
Sbjct: 363 YGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEP 422
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYAL 239
EHY MV+ LGRAG ++ + I+ + K+ P +IW +LL + R+H +++LA+ ++
Sbjct: 423 GLEHYGCMVDLLGRAGFLQKAYDLIQRM---KMKPDSIIWSSLLAACRIHKNVELAEISV 479
Query: 240 DKLLELDP---GMYV---------GCW-----------------------IEIQNKIYEF 264
+L ELD G Y+ G W +E+ +++ F
Sbjct: 480 ARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVF 539
Query: 265 VSNEE---LTSEVSDKLAEIEENMKELGFVLNRS----------------LYQTKMKAVA 305
+ +E ++ + LAE+ + E G+V N S ++ K+ A+A
Sbjct: 540 LIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKL-AIA 598
Query: 306 LGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDA 365
G+++ G V+K++ +C H+ + +S I++RE VV+D FHHFKDG CSC D
Sbjct: 599 FGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDY 658
Query: 366 Y 366
+
Sbjct: 659 W 659
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 55 SCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLS 114
S L I T QA++ G S V + LI + S CGK++DA F P++N +S
Sbjct: 87 SSLFDIFSGKQTHQQAFVF--GYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVS 144
Query: 115 WTFIISARVNHGHPSEALDLFKD 137
WT +I +G+ +A+ LFKD
Sbjct: 145 WTSMIRGYDLNGNALDAVSLFKD 167
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGK--IDDA 100
F+DS + ++++C + +++ KRG +VGN L++ ++ G+ + A
Sbjct: 180 FLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVA 239
Query: 101 DLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKD-KQWRYTSMNPTTFRSALKAYAL 159
F +K+ +S+ I+S G +EA ++F+ + + + N T + L A +
Sbjct: 240 RKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSH 299
Query: 160 MG 161
G
Sbjct: 300 SG 301
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 107/419 (25%), Positives = 190/419 (45%), Gaps = 65/419 (15%)
Query: 5 SLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNV 64
SL + W L+ ++ + +L +++ D + +L + + L +
Sbjct: 411 SLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLL 470
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G Q A++ + G + + G+ L+++ ++CG I DA F+ P++N++SW +ISA +
Sbjct: 471 GKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHAD 530
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
+G A+ F + + L A + G V + F +M +Y I P ++
Sbjct: 531 NGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKK 590
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
HY+ M++ LGR G F E E + +P + ++W ++L + R+H + LA+ A +KL
Sbjct: 591 HYACMLDLLGRNGRFAEA-EKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFS 649
Query: 245 L----DPGMYVG--------------------------------CWIEIQNKIYEFVSNE 268
+ D YV W+E+ +KI+ F SN+
Sbjct: 650 MEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSND 709
Query: 269 --------------ELTSEV---------SDKLAEIEENMKELGFVLNRSLYQTKMKAVA 305
ELT+E+ S + +++E MK + Y ++ AVA
Sbjct: 710 QTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMK-----IESLKYHSERLAVA 764
Query: 306 LGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKD 364
LIS P G P V+K++ C H+A + +S I++RE+ V+D FHHF +G CSC D
Sbjct: 765 FALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGD 823
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 115/242 (47%), Gaps = 21/242 (8%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQ--A 68
+ +N+++ + +A YE +Q C GF ++ +L+ N L +G Q
Sbjct: 317 VSYNVVISSYSQADQYEASLHFFREMQ-CMGFDRRNFPFATMLSIAANLSSLQMGRQLHC 375
Query: 69 QAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128
QA + I H VGN L+++ ++C ++A+L FKS P++ ++SWT +IS V G
Sbjct: 376 QALLATADSILH--VGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLH 433
Query: 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMG--LVGEAYRLFL----SMEEVYHIEPS 182
L LF + + +TF + LKA A L+G+ F+ ++E V+
Sbjct: 434 GAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVF----- 488
Query: 183 EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242
S +V+ + G ++ ++ + + P + + W L+ + +GD + A A K+
Sbjct: 489 --SGSGLVDMYAKCGSIKDAVQVFEEM-PDR-NAVSWNALISAHADNGDGEAAIGAFAKM 544
Query: 243 LE 244
+E
Sbjct: 545 IE 546
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126
+ A + K G + N ++ R G++ A + P KN++S +IS V G
Sbjct: 34 RVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTG 93
Query: 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSM 173
S A DLF R T+ + YA EA++LF M
Sbjct: 94 DVSSARDLFDAMPDRTV----VTWTILMGWYARNSHFDEAFKLFRQM 136
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 71/182 (39%), Gaps = 13/182 (7%)
Query: 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS 106
++ +L + + +G Q A G +VGN +++ S+ ++ + + F
Sbjct: 251 FTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDE 310
Query: 107 TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA-----LMG 161
PE + +S+ +IS+ +L F++ Q F + L A MG
Sbjct: 311 MPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMG 370
Query: 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221
L + + + H+ S +V+ + MFEE E I +P + + W
Sbjct: 371 RQLHCQALLATADSILHVGNS------LVDMYAKCEMFEEA-ELIFKSLPQR-TTVSWTA 422
Query: 222 LL 223
L+
Sbjct: 423 LI 424
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 154 bits (389), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 100/408 (24%), Positives = 183/408 (44%), Gaps = 54/408 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
+ W ++ K+ + L + C + Y+ +LN+C + +G Q Y
Sbjct: 285 VSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGY 344
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
MT+ G + + L+++ ++CG I+ A P+ + +SWT +I +G P EA
Sbjct: 345 MTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEA 404
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L F T + TF + L A GLV + F S+ E + + + +HY+ +V+
Sbjct: 405 LKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVD 464
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---- 247
L R+G FE++ I + P K +W ++L +G++ LA+ A +L +++P
Sbjct: 465 LLARSGRFEQLKSVISEM-PMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPV 523
Query: 248 ------GMYVGC-------------------------WIEIQNKIYEFV---SNEELTSE 273
+Y W EI+ K + F+ ++ + ++
Sbjct: 524 TYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQ 583
Query: 274 VSDKLAEIEENMKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTR 318
+ + L E+ + MKE G+V SL Y ++ AVA ++S G +
Sbjct: 584 IVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIK 643
Query: 319 VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V K++ C H A +F+S I +R++ V+D FH F++G+CSC D +
Sbjct: 644 VFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 81/201 (40%), Gaps = 6/201 (2%)
Query: 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107
+ C+++ C L G + ++ G + + N L+ + ++CG + DA F
Sbjct: 87 TYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEM 146
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167
P ++ SW +++ G EA LF + T + ++ + + Y EA
Sbjct: 147 PNRDLCSWNVMVNGYAEVGLLEEARKLFDE----MTEKDSYSWTAMVTGYVKKDQPEEAL 202
Query: 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLS 225
L+ M+ V + P+ SI V A E IV L ++W +L+
Sbjct: 203 VLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDM 262
Query: 226 SRVHGDMKLAKYALDKLLELD 246
G + A+ DK++E D
Sbjct: 263 YGKCGCIDEARNIFDKIVEKD 283
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 71/184 (38%), Gaps = 11/184 (5%)
Query: 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN 124
G + ++ + GL S + + L+++ +CG ID+A F EK+ +SWT +I
Sbjct: 237 GKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFK 296
Query: 125 HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE 184
E LF + N TF L A A + ++ M V +P
Sbjct: 297 SSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRV-GFDPYSF 355
Query: 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP----LIWRTLLLSSRVHGDMKLAKYALD 240
S +V+ + G E + G CP + W +L+ +G A D
Sbjct: 356 ASSSLVDMYTKCGNIESAKHVVDG------CPKPDLVSWTSLIGGCAQNGQPDEALKYFD 409
Query: 241 KLLE 244
LL+
Sbjct: 410 LLLK 413
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/409 (27%), Positives = 192/409 (46%), Gaps = 55/409 (13%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQA 70
+ WN ++ ++ +E E+ +Q G D ++ I ++C + L++
Sbjct: 435 VSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYY 494
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
Y+ K G+ +G L+++ SRCG + A F S ++ +WT I A G+
Sbjct: 495 YIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAER 554
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190
A++LF D + + F AL A + GLV + +F SM +++ + P + HY MV
Sbjct: 555 AIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMV 614
Query: 191 EALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP--- 247
+ LGRAG+ EE ++ I+ + P + +IW +LL + RV G++++A YA +K+ L P
Sbjct: 615 DLLGRAGLLEEAVQLIEDM-PMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERT 673
Query: 248 GMYV---------GCW-----------------------IEIQNKIYEFVSNEELTSEVS 275
G YV G W I+I+ K +EF S +E E+
Sbjct: 674 GSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMP 733
Query: 276 D---KLAEIEENMKELGFV--LNRSLYQTKMK-------------AVALGLISFPHGMPT 317
+ L E+ + LG V L+ L K A+A GLIS G
Sbjct: 734 NIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTI 793
Query: 318 RVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
R++K++ +C HS +F S + RE++++D FH+ + GKCSC D +
Sbjct: 794 RIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D Y+ L++C G Q + K G V N L++ + CG++D A F
Sbjct: 133 DKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVF 192
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
E+N +SWT +I +A+DLF
Sbjct: 193 DEMSERNVVSWTSMICGYARRDFAKDAVDLF 223
Score = 35.4 bits (80), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 95 GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
G++D A F++ PEKN +SW IIS V EA+++F
Sbjct: 417 GEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVF 457
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/416 (27%), Positives = 193/416 (46%), Gaps = 63/416 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCC---GFI--DSYSICDILNSCLNPILLNVGT 66
I W+ L+ + Y+ +L +QL F+ + +++ +L++C L G
Sbjct: 160 ISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGK 219
Query: 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSL-SWTFIISARVNH 125
AY+ K + +G LI++ ++CG ++ A F + K + +++ +I +
Sbjct: 220 WVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMY 279
Query: 126 GHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE 183
G E LF + ++NP TF L A GL+ E F M E + I PS
Sbjct: 280 GLTDECFQLFSEMT-TSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSI 338
Query: 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243
+HY MV+ GR+G+ +E FI + P + LIW +LL SR+ GD+K + AL +L+
Sbjct: 339 QHYGCMVDLYGRSGLIKEAESFIASM-PMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLI 397
Query: 244 ELDP---GMYV-------------------------------GC-WIEIQNKIYEFVSNE 268
ELDP G YV GC ++E++ ++EFV +
Sbjct: 398 ELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGD 457
Query: 269 ELTSE---VSDKLAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLIS 310
E E + L EI + ++E G+V + Y ++ A+A L+
Sbjct: 458 ESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMK 517
Query: 311 FPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G P R+IK++ +CG H + +S + RE+VV+D FHHF+DG CSC+D +
Sbjct: 518 TRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 13/196 (6%)
Query: 14 WNLLLKACIKAKDYEMVHELLE---RIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQA 70
WN++++A + H + R++ D ++ +L S NP+ L +G + A
Sbjct: 27 WNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHA 86
Query: 71 YMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130
+ GL P V L+N+ S CG + A F + K+ +W +++A G +
Sbjct: 87 QILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDD 146
Query: 131 ALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME-----EVYHIEPSEEH 185
A LF + R N ++ + Y + G EA LF M+ E + + P+E
Sbjct: 147 ARKLFDEMPER----NVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAF-VRPNEFT 201
Query: 186 YSIMVEALGRAGMFEE 201
S ++ A GR G E+
Sbjct: 202 MSTVLSACGRLGALEQ 217
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
L +G Y G+ +G+ LI++ S+CG I+ A F+ P +N ++W+ +I+
Sbjct: 290 LELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMING 349
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181
HG +A+D F + + + + L A + GLV E R F M V +EP
Sbjct: 350 FAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEP 409
Query: 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241
EHY MV+ LGR+G+ +E EFI + P K +IW+ LL + R+ G++++ K +
Sbjct: 410 RIEHYGCMVDLLGRSGLLDEAEEFILNM-PIKPDDVIWKALLGACRMQGNVEMGKRVANI 468
Query: 242 LLEL---DPGMYV---------GCW-----------------------IEIQNKIYEFVS 266
L+++ D G YV G W I+I ++EFV
Sbjct: 469 LMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVV 528
Query: 267 NEE---LTSEVSDKLAEIEENMKELGF------VL---------NRSLYQTKMKAVALGL 308
++ E++ L EI + ++ G+ VL N Y ++ A A GL
Sbjct: 529 EDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGL 588
Query: 309 ISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
IS G P R++K++ +C HS+ + +S + +R++ V+D FHHF+DG CSC D +
Sbjct: 589 ISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
>sp|Q9LYU9|PP378_ARATH Pentatricopeptide repeat-containing protein At5g13270,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2
SV=1
Length = 752
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 187/404 (46%), Gaps = 50/404 (12%)
Query: 11 EIPWNLLLKACIKAKDYEMVHELLERIQ-LCCGFIDSYSICDILNSCLNPILLNVGTQAQ 69
++ W+ ++ + +E + + ++ ++S++ I +C N+G Q
Sbjct: 351 DVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVH 410
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
A KR LI + LI + S+CG +DDA+ F+S + ++WT IS +G+ S
Sbjct: 411 ADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNAS 470
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
EAL LF+ N TF + L A + GLV + +M Y++ P+ +HY M
Sbjct: 471 EALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCM 530
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249
++ R+G+ +E L+F+K + P + + W+ L H +++L + A ++L +LDP
Sbjct: 531 IDIYARSGLLDEALKFMKNM-PFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPED 589
Query: 250 YVG-----------------------------------CWIEIQNKIYEFVSNEE---LT 271
G WI+ + KI+ F+ ++ T
Sbjct: 590 TAGYVLPFNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQT 649
Query: 272 SEVSDKLAEIEENMKELGFVLNRS------LYQTKMKAVALGLISFPHG---MPTRVIKS 322
E+ +KL E + M+ F N + L ++ A+A GLIS HG P +V K+
Sbjct: 650 QEIYEKLKEFDGFMEGDMFQCNMTERREQLLDHSERLAIAFGLISV-HGNAPAPIKVFKN 708
Query: 323 VGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ C H + +S + E+V++D FHHFK+GKCSC D +
Sbjct: 709 LRACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW 752
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DS+ +L +C + LN+G Q A + K GL S +VG L++ +C + A AF
Sbjct: 284 DSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAF 343
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS-MNPTTFRSALKAYALMG 161
+ E N +SW+ IIS EA+ FK + + S +N T+ S +A +++
Sbjct: 344 QEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLA 401
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+L S +NP L+ G Q A++ + GL S+ ++ ++N+ +CG + A F K
Sbjct: 190 LLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKK 249
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
++ T ++ G +AL LF D + F LKA A
Sbjct: 250 PVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACA 296
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 15 NLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTK 74
NL L + K + E L+ + + SYS + +C L+ G M
Sbjct: 52 NLHLVSLSKHRKLNEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRM-- 109
Query: 75 RGLISHPAV--GNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
R I +P+V NC++ + C ++DAD F E N++S T +ISA G +A+
Sbjct: 110 RMGIENPSVLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAV 169
Query: 133 DLF 135
LF
Sbjct: 170 GLF 172
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 152 bits (384), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 176/375 (46%), Gaps = 54/375 (14%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
D +SI L+SC + L++G + + + +++ + N LI++ ++CG + F
Sbjct: 312 DQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVF 371
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164
K EK+ + IS +GH + +F + S + +TF L GL+
Sbjct: 372 KEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQ 431
Query: 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224
+ R F ++ VY ++ + EHY MV+ GRAGM ++ I + P + ++W LL
Sbjct: 432 DGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDM-PMRPNAIVWGALLS 490
Query: 225 SSRVHGDMKLAKYALDKLLELDP---GMYVG----------------------------- 252
R+ D +LA+ L +L+ L+P G YV
Sbjct: 491 GCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKI 550
Query: 253 ---CWIEIQNKIYEFVSNEE---LTSEVSDKLAEIEENMKELGFVLNRSL---------- 296
WIE++ K++EF+++++ L+ ++ KL ++ M+ +GFV
Sbjct: 551 PGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEK 610
Query: 297 -----YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGS 351
Y ++ AVALGLIS HG RV+K++ +CG H + +S I RE+VV+D
Sbjct: 611 ERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNR 670
Query: 352 FHHFKDGKCSCKDAY 366
FH F +G CSC D +
Sbjct: 671 FHCFTNGSCSCNDYW 685
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 51/91 (56%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAF 104
DSY I +L++C++ L+ G YM + + + V L+N+ ++CGK++ A F
Sbjct: 211 DSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVF 270
Query: 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLF 135
S EK+ ++W+ +I ++ P E ++LF
Sbjct: 271 DSMVEKDIVTWSTMIQGYASNSFPKEGIELF 301
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 4/135 (2%)
Query: 6 LISDVEIP----WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL 61
L S + P +N L+ + + +L I+ ++ ++ +L +C
Sbjct: 67 LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
+G + + K G A L++I S G+++DA F P+++ ++WT + S
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSG 186
Query: 122 RVNHGHPSEALDLFK 136
G EA+DLFK
Sbjct: 187 YTTSGRHREAIDLFK 201
>sp|Q9FK93|PP406_ARATH Pentatricopeptide repeat-containing protein At5g39680
OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1
Length = 710
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 110/404 (27%), Positives = 186/404 (46%), Gaps = 56/404 (13%)
Query: 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRG 76
++ A + K +E L ++ + Y+ +LNS LL G + K G
Sbjct: 309 IMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSG 368
Query: 77 LISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFK 136
+H VGN L+N+ ++ G I+DA AF ++ ++W +IS +HG EAL+ F
Sbjct: 369 YRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFD 428
Query: 137 DKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA 196
+ N TF L+A + +G V + F + + + ++P +HY+ +V L +A
Sbjct: 429 RMIFTGEIPNRITFIGVLQACSHIGFVEQGLHYFNQLMKKFDVQPDIQHYTCIVGLLSKA 488
Query: 197 GMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAK----YALDKLLELDPGMYV- 251
GMF++ +F++ P + + WRTLL + V + +L K YA++K D G+YV
Sbjct: 489 GMFKDAEDFMR-TAPIEWDVVAWRTLLNACYVRRNYRLGKKVAEYAIEKYPN-DSGVYVL 546
Query: 252 -------------------------------GCWIEIQNKIYEFVSNEELTSEVS---DK 277
WI I+N+ + F++ + E++ K
Sbjct: 547 LSNIHAKSREWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPEITLIYAK 606
Query: 278 LAEIEENMKELGFVLNRS---------------LYQTKMKAVALGLISFPHGMPTRVIKS 322
+ E+ +K LG+ + + Y ++ AVA GLI P P V K+
Sbjct: 607 VKEVMSKIKPLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPEKSPLYVTKN 666
Query: 323 VGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
V +C HSA + +S I +R +V++D FHHF DG+CSC D +
Sbjct: 667 VRICDDCHSAIKLISKISKRYIVIRDSNRFHHFLDGQCSCCDYW 710
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 9/185 (4%)
Query: 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISA 121
LN+ Q + M + G + LIN+ +CGK+ A F T +N T I+ A
Sbjct: 253 LNLALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDA 312
Query: 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA---YRLFLSMEEVYH 178
EAL+LF + N TF L + A + L+ + + L L H
Sbjct: 313 YFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNH 372
Query: 179 IEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYA 238
+ + +V ++G E+ + G+ + + W T++ HG + A A
Sbjct: 373 VMVG----NALVNMYAKSGSIEDARKAFSGMTFRDI--VTWNTMISGCSHHGLGREALEA 426
Query: 239 LDKLL 243
D+++
Sbjct: 427 FDRMI 431
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 51 DILNSCLNPILLNVGTQAQAYMTKRGLISHPAVG---NCLININSRCGKIDDADLAFKST 107
++L C N L +G A++ S N LIN+ +C + A F
Sbjct: 36 ELLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDLM 95
Query: 108 PEKNSLSWTFIISARVNHGHPSEALDLFK 136
PE+N +SW ++ N G E L LFK
Sbjct: 96 PERNVVSWCAMMKGYQNSGFDFEVLKLFK 124
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 44/107 (41%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111
+ SC N + G Q K GLISH V N L+ + S C +A P +
Sbjct: 142 VFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCD 201
Query: 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
++ +S + G E LD+ + N T+ S+L+ ++
Sbjct: 202 LSVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFS 248
>sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550
OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1
Length = 581
Score = 149 bits (376), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 110/414 (26%), Positives = 189/414 (45%), Gaps = 65/414 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERI--QLCCGFIDSYSICDILNSCLNPILLNVGTQAQ 69
+ WN+++ + + +R+ + CG DSY++ +L+SC + LN+G
Sbjct: 174 VSWNVMICCFSHVGLHNQALSMYKRMGNEGVCG--DSYTLVALLSSCAHVSALNMGVMLH 231
Query: 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129
S V N LI++ ++CG +++A F +++ L+W +I HGH
Sbjct: 232 RIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGV 291
Query: 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189
EA+ F+ N TF L + GLV E F M +H+ P+ +HY M
Sbjct: 292 EAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCM 351
Query: 190 VEALGRAGMFEEVLEFIKGIVPGKLC---PLIWRTLLLSSRVHGDMKLAKYALDKLLEL- 245
V+ GRAG E LE I C P++WRTLL S ++H +++L + A+ KL++L
Sbjct: 352 VDLYGRAGQLENSLEMIY----ASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLE 407
Query: 246 --DPGMYV--------------------------------GCWIEIQNKIYEFVSNEELT 271
+ G YV WIEI +++++FV ++++
Sbjct: 408 AFNAGDYVLMTSIYSAANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMH 467
Query: 272 SE---VSDKLAEI-----------EENMKELGFVLNRSL-----YQTKMKAVALGLISFP 312
E + +L E+ E++ + + +R L ++ A+A GL+
Sbjct: 468 PESAVIYSELGEVINRAILAGYKPEDSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTT 527
Query: 313 HGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
G R+ K++ +C HS +++S RE++V+D FHHF DG CSC D +
Sbjct: 528 AGTTLRITKNLRVCRDCHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581
>sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protein At1g19720
OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1
Length = 894
Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 110/404 (27%), Positives = 182/404 (45%), Gaps = 52/404 (12%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WNL++ I+ + EL ++Q +S +I +L +C N + + + +
Sbjct: 492 WNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACANLLGAKMVREIHGCVL 551
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+R L + AV N L + ++ G I+ + F K+ ++W +I V HG AL
Sbjct: 552 RRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSLIGGYVLHGSYGPALA 611
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
LF + + + N T S + A+ LMG V E ++F S+ YHI P+ EH S MV
Sbjct: 612 LFNQMKTQGITPNRGTLSSIILAHGLMGNVDEGKKVFYSIANDYHIIPALEHCSAMVYLY 671
Query: 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP------ 247
GRA EE L+FI+ + P IW + L R+HGD+ +A +A + L L+P
Sbjct: 672 GRANRLEEALQFIQEMNIQSETP-IWESFLTGCRIHGDIDMAIHAAENLFSLEPENTATE 730
Query: 248 ---------GMYVG--------------------CWIEIQNKIYEFVSNEE--LTSEVSD 276
G +G WIE++N I+ F + ++ L ++V
Sbjct: 731 SIVSQIYALGAKLGRSLEGNKPRRDNLLKKPLGQSWIEVRNLIHTFTTGDQSKLCTDVLY 790
Query: 277 KLAEIEENMKELGFVLNRSLY------------QTKMKAVALGLISFPHGMPT--RVIKS 322
L E + N L+ ++ A+A GLIS T R++K+
Sbjct: 791 PLVEKMSRLDNRSDQYNGELWIEEEGREETCGIHSEKFAMAFGLISSSGASKTTIRILKN 850
Query: 323 VGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAY 366
+ MC H +++S +++++D HHFK+G CSCKD +
Sbjct: 851 LRMCRDCHDTAKYVSKRYGCDILLEDTRCLHHFKNGDCSCKDYW 894
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 97/211 (45%), Gaps = 1/211 (0%)
Query: 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG 65
+ +DV W ++ I ++ ++ L ++ +I +++C ++N G
Sbjct: 313 ITADV-FTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQG 371
Query: 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH 125
++ + K G I VGN L+++ S+CGK++DA F S K+ +W +I+
Sbjct: 372 SEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQA 431
Query: 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185
G+ +A +LF Q N T+ + + Y G GEA LF ME+ ++ +
Sbjct: 432 GYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDLFQRMEKDGKVQRNTAT 491
Query: 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCP 216
+++++ + G +E LE + + + P
Sbjct: 492 WNLIIAGYIQNGKKDEALELFRKMQFSRFMP 522
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 92/204 (45%), Gaps = 8/204 (3%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYM 72
W+ ++ A + + V +L R+ + G + D + IL C N + G + +
Sbjct: 149 WSAMIGAYSRENRWREVAKLF-RLMMKDGVLPDDFLFPKILQGCANCGDVEAGKVIHSVV 207
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K G+ S V N ++ + ++CG++D A F+ E++ ++W ++ A +G EA+
Sbjct: 208 IKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEAV 267
Query: 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA 192
+L K+ + S T+ + Y +G A L M E + I ++ M+
Sbjct: 268 ELVKEMEKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKM-ETFGITADVFTWTAMISG 326
Query: 193 LGRAGMFEEVLE-----FIKGIVP 211
L GM + L+ F+ G+VP
Sbjct: 327 LIHNGMRYQALDMFRKMFLAGVVP 350
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAV--GNCLININSRCGKIDDADLAFKSTPE 109
+L SC++ +++G A + GL + P V L+++ ++CG I DA F S E
Sbjct: 87 LLESCIDSGSIHLGRILHA---RFGLFTEPDVFVETKLLSMYAKCGCIADARKVFDSMRE 143
Query: 110 KNSLSWTFIISARVNHGHPSEALDLFK 136
+N +W+ +I A E LF+
Sbjct: 144 RNLFTWSAMIGAYSRENRWREVAKLFR 170
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 109 EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158
++N+ +W II+ + +G EAL+LF+ Q+ N T S L A A
Sbjct: 486 QRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACA 535
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDA-DLAFKSTP---EKNSLSWTFIISARVNHGH 127
M K G+ N LI ++ GK D A DL K + +WT +IS +++G
Sbjct: 273 MEKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKMETFGITADVFTWTAMISGLIHNGM 332
Query: 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166
+ALD+F+ N T SA+ A + + ++ +
Sbjct: 333 RYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQG 371
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 148 bits (373), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 102/409 (24%), Positives = 187/409 (45%), Gaps = 64/409 (15%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAY 71
I WN ++ + + + +QL ++ ++ +L++C L+ G A +Y
Sbjct: 206 IAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSY 265
Query: 72 MTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131
+ + + + L+++ ++CG ++ A F EKN +W+ ++ +G +
Sbjct: 266 IERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKC 325
Query: 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191
L+LF + + N TF S L+ +++G V E R F SM + IEP EHY +V+
Sbjct: 326 LELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVD 385
Query: 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP---G 248
RAG E+ + I+ + P K +W +LL +SR++ +++L A K+LEL+ G
Sbjct: 386 LYARAGRLEDAVSIIQQM-PMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHG 444
Query: 249 MYV-------------------------------GCWI-EIQNKIYEFVSNEE------- 269
YV GC + E+ +++EF ++
Sbjct: 445 AYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQ 504
Query: 270 ---LTSEVSDKLA-------------EIEENMKELGFVLNRSLYQTKMKAVALGLISFPH 313
+ ++S +L +I+E KE L+ ++ A+A G++S
Sbjct: 505 IDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLH-----SEKAAIAFGIMSLKE 559
Query: 314 GMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSC 362
+P R++K++ +CG H +S I RE++V+D FHHFKDG CSC
Sbjct: 560 DVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSC 608
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 32/196 (16%)
Query: 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI-------------- 90
D+Y++ ++ +C + G Q +RG + P V LI++
Sbjct: 107 DNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVF 166
Query: 91 NS-----------------RCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
NS RCG + A F+ PE++ ++W +IS G EAL+
Sbjct: 167 NSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALN 226
Query: 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193
+F Q +N S L A +G + + R S E I+ + + +V+
Sbjct: 227 VFHLMQLEGVKVNGVAMISVLSACTQLGALDQG-RWAHSYIERNKIKITVRLATTLVDLY 285
Query: 194 GRAGMFEEVLEFIKGI 209
+ G E+ +E G+
Sbjct: 286 AKCGDMEKAMEVFWGM 301
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 144 bits (364), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 106/390 (27%), Positives = 175/390 (44%), Gaps = 64/390 (16%)
Query: 33 LLERIQLC-CGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91
+L IQLC + + C +L S L +G +A AY K L + LI++
Sbjct: 589 VLYGIQLCGISMMPVFGACSLLPS------LRLGREAHAYALKHLLEDDAFIACSLIDMY 642
Query: 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT--T 149
++ G I + F EK++ SW +I HG EA+ LF++ Q T NP T
Sbjct: 643 AKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQ--RTGHNPDDLT 700
Query: 150 FRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI 209
F L A GL+ E R M+ + ++P+ +HY+ +++ LGRAG ++ L +
Sbjct: 701 FLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEE 760
Query: 210 VPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP----------GMYVG------- 252
+ + IW++LL S R+H ++++ + KL EL+P +Y G
Sbjct: 761 MSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDV 820
Query: 253 ------------------CWIEIQNKIYEFVSNEELTS---EVSDKLAEIEENMKELGFV 291
WIE+ K++ FV E E+ + +E + ++G+
Sbjct: 821 RKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYR 880
Query: 292 LNRSLYQTKMK---------------AVALGLISFPHGMPTRVIKSVGMCGYSHSACRFM 336
+ Q + A+ GLI G RV K++ +C H+A + +
Sbjct: 881 PDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLI 940
Query: 337 STIIERELVVKDPGSFHHFKDGKCSCKDAY 366
S ++ERE+VV+D FHHFK+G CSC D +
Sbjct: 941 SKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 101/236 (42%), Gaps = 17/236 (7%)
Query: 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT 73
WN L+ ++ D + + ++++ DS+++C +L++C L +G + ++
Sbjct: 464 WNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFII 523
Query: 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALD 133
+ L V ++++ CG++ F + +K+ +SW +I+ + +G P AL
Sbjct: 524 RNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALG 583
Query: 134 LFKDK-----QWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188
+F+ Q SM P +L +G AY L +E+ I S
Sbjct: 584 VFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACS------ 637
Query: 189 MVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244
+++ + G + + G+ W +++ +HG LAK A+ KL E
Sbjct: 638 LIDMYAKNGSITQSSKVFNGLKEKSTAS--WNAMIMGYGIHG---LAKEAI-KLFE 687
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Query: 14 WNLLLKACIKAKDYEMVHE-LLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72
WN ++ + + + Y+ V E +E I D ++ ++ +C + +G +
Sbjct: 154 WNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLV 213
Query: 73 TKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEAL 132
K GL+ VGN L++ G + DA F PE+N +SW +I ++G E+
Sbjct: 214 VKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESF 273
Query: 133 DLFKD 137
L +
Sbjct: 274 LLLGE 278
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 4/129 (3%)
Query: 12 IPWNLLLKA----CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQ 67
+ WN +++ + + ++ E++E D ++ +L C + +G
Sbjct: 254 VSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKG 313
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
+ K L + N L+++ S+CG I +A + FK KN +SW ++ G
Sbjct: 314 VHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGD 373
Query: 128 PSEALDLFK 136
D+ +
Sbjct: 374 THGTFDVLR 382
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 8/143 (5%)
Query: 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF----IDSYSICDILNSCLNPILLNVGTQ 67
+ WN ++ D ++L Q+ G D +I + + C + L +
Sbjct: 359 VSWNTMVGGFSAEGDTHGTFDVLR--QMLAGGEDVKADEVTILNAVPVCFHESFLPSLKE 416
Query: 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGH 127
Y K+ + + V N + ++CG + A F K SW +I
Sbjct: 417 LHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSND 476
Query: 128 PSEALDLFKDKQWRYTSMNPTTF 150
P +LD Q + + + P +F
Sbjct: 477 PRLSLD--AHLQMKISGLLPDSF 497
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,536,837
Number of Sequences: 539616
Number of extensions: 5591593
Number of successful extensions: 14800
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 13066
Number of HSP's gapped (non-prelim): 1306
length of query: 373
length of database: 191,569,459
effective HSP length: 119
effective length of query: 254
effective length of database: 127,355,155
effective search space: 32348209370
effective search space used: 32348209370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)